CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Target MGE spacer number	Prophage number
NZ_CP047438	Spiroplasma citri strain BLH-MB plasmid pSciBLHMB-1, complete sequence	1 crisprs	NA	1	0
NZ_CP047440	Spiroplasma citri strain BLH-MB plasmid pSciBLHMB-3, complete sequence	0 crisprs	NA	0	0
NZ_CP047439	Spiroplasma citri strain BLH-MB plasmid pSciBLHMB-2, complete sequence	0 crisprs	NA	0	0
NZ_CP047437	Spiroplasma citri strain BLH-MB chromosome, complete genome	0 crisprs	cas4	0	21
NZ_CP047446	Spiroplasma citri strain BLH-MB plasmid pSciBLHMB-9	1 crisprs	NA	1	0
NZ_CP047441	Spiroplasma citri strain BLH-MB plasmid pSciBLHMB-4, complete sequence	0 crisprs	NA	0	0
NZ_CP047442	Spiroplasma citri strain BLH-MB plasmid pSciBLHMB-5, complete sequence	0 crisprs	NA	0	0
NZ_CP047445	Spiroplasma citri strain BLH-MB plasmid pSciBLHMB-8	0 crisprs	NA	0	0
NZ_CP047444	Spiroplasma citri strain BLH-MB plasmid pSciBLHMB-7	0 crisprs	NA	0	1
NZ_CP047443	Spiroplasma citri strain BLH-MB plasmid pSciBLHMB-6, complete sequence	1 crisprs	NA	1	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP047438_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP047438_1

9554-9692

Orphan

Consensus_repeat	Method
TATAAATAATTATATTTACTATTTAAAGTATAAATAATTATTT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP047438_1

>merge|NZ_CP047438|1|9554-9692|CRISPRCasFinder
TATAAATAATTATATTTACTATTTAAAGTATAAATAATTATTTATAATTATTTATATAAAAAAACTTGATTTTAATTATATTTTTGATATTATAATTATAAATAATTATATTTACTATTTAAAGTATAAATAATTATTT

>NZ_CP047438|1|1|9554-9692|CRISPRCasFinder
TATAAATAATTATATTTACTATTTAAAGTATAAATAATTATTT	ATAATTATTTATATAAAAAAACTTGATTTTAATTATATTTTTGATATTATAAT
TATAAATAATTATATTTACTATTTAAAGTATAAATAATTATTT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP047438.1\|WP_164028424.1\|13957_15517_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP047438.1\|WP_147077835.1\|13670_13940_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP047438.1\|WP_164028416.1\|8675_8891_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP047438.1\|WP_164028412.1\|4668_5085_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP047438.1\|WP_164028422.1\|11589_13671_+\|adhesin	unknown	unknown	gnl\|CDD\|271322
NZ_CP047438.1\|WP_164028418.1\|9713_9971_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP047438.1\|WP_164028426.1\|18466_19978_+\|type-IV-secretion-system-DNA-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|274760
NZ_CP047438.1\|WP_011270185.1\|18032_18371_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP047438.1\|WP_164028415.1\|6169_6760_-\|site-specific-DNA-methyltransferase	unknown	unknown	gnl\|CDD\|334588
NZ_CP047438.1\|WP_164028420.1\|11185_11404_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP047438.1\|WP_164028417.1\|9040_9370_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP047438.1\|WP_164028393.1\|3960_4506_-\|pentapeptide-repeat-containing-protein	unknown	unknown	gnl\|CDD\|224276
NZ_CP047438.1\|WP_164028419.1\|9957_10734_+\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|224113
NZ_CP047438.1\|WP_164028414.1\|5648_5951_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP047438.1\|WP_164028397.1\|7052_7493_-\|DUF3627-domain-containing-protein	unknown	unknown	gnl\|CDD\|372024
NZ_CP047438.1\|WP_011270184.1\|15506_18029_+\|TraE-like-protein	unknown	unknown	gnl\|CDD\|225982
NZ_CP047438.1\|WP_164028428.1\|20759_21410_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP047438.1\|WP_164028285.1\|3508_3961_-\|pentapeptide-repeat-containing-protein	unknown	unknown	gnl\|CDD\|224276
NZ_CP047438.1\|WP_071891731.1\|5098_5278_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP047438.1\|WP_157092848.1\|4525_4663_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP047438.1\|WP_164028393.1\|3960_4506_-\|pentapeptide-repeat-containing-protein	gnl\|CDD\|224276	COG1357, COG1357, Pentapeptide repeats containing protein [Function unknown].	3.84174e-30
NZ_CP047438.1\|WP_164028419.1\|9957_10734_+\|AAA-family-ATPase	gnl\|CDD\|224113	COG1192, Soj, ATPases involved in chromosome partitioning [Cell division and chromosome partitioning].	3.13938e-31
NZ_CP047438.1\|WP_164028422.1\|11589_13671_+\|adhesin	gnl\|CDD\|271322	cd14952, NHL_PKND_like, NHL repeat domain of the protein kinase PknD. PknD is a mycobacterial transmembrane protein with a cytosolic kinase domain and an extracellular sensor domain that contains NHL repeats. It plays a key role in the development of central nervous system tuberculosis, by mediating the invasion of host brain endothelia. The NHL (NCL-1, HT2A and LIN-41) repeat is found in multiple tandem copies, typically as 6 instances. It is about 40 residues long and resembles the WD repeat and other beta-propeller structures.	1.12125e-08
NZ_CP047438.1\|WP_164028397.1\|7052_7493_-\|DUF3627-domain-containing-protein	gnl\|CDD\|372024	pfam12299, DUF3627, Protein of unknown function (DUF3627). This domain family is found in bacteria and viruses, and is approximately 90 amino acids in length. The family is found in association with pfam02498.	4.18362e-10
NZ_CP047438.1\|WP_011270184.1\|15506_18029_+\|TraE-like-protein	gnl\|CDD\|225982	COG3451, VirB4, Type IV secretory pathway, VirB4 components [Intracellular trafficking and secretion].	1.06924e-12
NZ_CP047438.1\|WP_164028426.1\|18466_19978_+\|type-IV-secretion-system-DNA-binding-domain-containing-protein	gnl\|CDD\|274760	TIGR03743, SXT_TraD, conjugative coupling factor TraD, SXT/TOL subfamily. Members of this protein family are the putative conjugative coupling factor, TraD (or TraG), rather distantly related to the well-characterized TraD of the F plasmid. Members are associated with conjugative-transposon-like mobile genetic elements of the class that includes SXT, an antibiotic resistance transfer element in some Vibrio cholerae strains. [Mobile and extrachromosomal element functions, Other].	3.63628e-13
NZ_CP047438.1\|WP_164028285.1\|3508_3961_-\|pentapeptide-repeat-containing-protein	gnl\|CDD\|224276	COG1357, COG1357, Pentapeptide repeats containing protein [Function unknown].	9.90646e-15
NZ_CP047438.1\|WP_164028415.1\|6169_6760_-\|site-specific-DNA-methyltransferase	gnl\|CDD\|334588	pfam01555, N6_N4_Mtase, DNA methylase. Members of this family are DNA methylases. The family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases.	1.42027e-20

>NZ_CP047438.1|WP_164028417.1|9040_9370_-|hypothetical-protein
MPIKLNDIMQETYYKVDYEKLLDYFSQFRIFLSKWNNKKYLKNWIDCLKQYDKEISQQINEKNTKINVNTNLVKDEWFNQKIDLEGNEIVIHFNINIVNQEIYNLKEQK
>NZ_CP047438.1|WP_164028416.1|8675_8891_-|hypothetical-protein
MIDGNHRVSKALALGKQTINCVYITQDEIIKINPFINDFDKYFYILWNEINNLNNYRINNLYISDRKLLIA
>NZ_CP047438.1|WP_164028397.1|7052_7493_-|DUF3627-domain-containing-protein
MYQKPSYKKNINVENYFISKGFIPFTTDKASFINLPNHNRHIGFWLSNKFIYPSEKNCNQVAIGLIYDNYYSIVKYDENLKRNIWKSLTGTELINLYNQYKQNYSTNMKKALFSSEPKKVKTNKNNFTNLSVEKKEQLIKDLKSLN
>NZ_CP047438.1|WP_164028415.1|6169_6760_-|site-specific-DNA-methyltransferase
MKKSNITKSINKYINAIYDNNLHNSFDINTYLDEFYRISKNKFMLIWMNRQQIIDYLDWVRKKDMLYDFILWNKTNPMPTNNHIYQDKEYCMIIYSKKHRIPNYKNDYESKKTIFNYSIGKKLTRHPTEKPLYIFNRLISKYSKENDLILDCFMGSGTTAYACEQLKRKWLGCEINNEYYKIIKKRLKDIQFKFEF
>NZ_CP047438.1|WP_164028414.1|5648_5951_-|hypothetical-protein
MLNIKKCKNNNYFLLIKNINYIAVLIAMMVVLSQVMRIQIILRTSIPLFLIPVFISTFILNWYWCLFIGFVGHLLVDLSLWGFTLGSLCWNLGTGLLAIF
>NZ_CP047438.1|WP_071891731.1|5098_5278_-|hypothetical-protein
MKCQRINCNNKNAYCGNSYIEKSNDKLEWNLGYKKQIILCEEHWLQTYQLENLSVNKKN
>NZ_CP047438.1|WP_164028412.1|4668_5085_-|hypothetical-protein
MTKKYLLIIKNEYLTTYAYYTLEEAKVREKIENNNYGLSTAIIDLKDIEWKGNNNMKEIRNVQLSEFQKEIINKLDDKYCYKISRGTGIYSGYNAIKIFNKKMEHLFTIDERDNTVSINNYIKKKKGTGILGTYIKGK
>NZ_CP047438.1|WP_157092848.1|4525_4663_-|hypothetical-protein
MWKDEDGKVYTKEDLFNEALEECHSEESAYDYIDTLIAEKNLEEL
>NZ_CP047438.1|WP_164028393.1|3960_4506_-|pentapeptide-repeat-containing-protein
MIKDLTGVTVEQDKISKYLASEILDLEETNLKNANLRSANLWCANLQSANLEYANLWSANLQHACLREADLRDADLQSANLENANLWSANLRGANLEYACLRDADLREADLYGADLRGAVLRDADLRSANLYGAKLIEANLSGAKLQGADLKGADLEGADLEGIKITKEQLDQLTVIEENE
>NZ_CP047438.1|WP_164028285.1|3508_3961_-|pentapeptide-repeat-containing-protein
MLENEINKMKTIQDMIKDLTGVTVEQDKISKYLASETLDLEETNLKNANLWSANLEYANLWSANLQHANLKNANLWSANLWCAYLQSANLRSANLWCANLQSANLEYANLRSANLENACLVGTNLENACLLGARITKQQLDQLTVIEENE
>NZ_CP047438.1|WP_164028418.1|9713_9971_+|hypothetical-protein
MPNIDKEKTNITKNLINKTSSFSDVREFKKLDNSTFMPRMKCNFQVVKEFRKEAKIKKWQLTTLMNEILAERYKIDLENSNNEDD
>NZ_CP047438.1|WP_164028419.1|9957_10734_+|AAA-family-ATPase
MKMISFCNKKGGVGKTTLCKNVAYKLALDGAKVLLIDLDPQATLTLNLVNNVYNKNKTIKSVLTEPELIKIVQLIQPTKYKNIDIIVGGEQLNKVSAILNLNYLNEKDQHLIADTLYIENANTFDSYDYVLLDYPPSINELSLSFLMLSDLIIAPLTDDGGCYKGVLDLKNTLNYIAKIINKEPPNIKILLNNVKNNDVTETILEWLKNDNLTQYLLKCEIKHSDTFSKNTVKLDTIWTNPTYWRQKQAYEELIKEIK
>NZ_CP047438.1|WP_164028420.1|11185_11404_+|hypothetical-protein
MKKLLSILTISTLTASIPAPLLAAVPLTNTLTSNSNSDYLPIKKNIFIPKHFVSFTIVGKGNIYFLNVDFLF
>NZ_CP047438.1|WP_164028422.1|11589_13671_+|adhesin
MVDSKNNIYFGTDNGVFVLKQGSDTPTKINGINGYITSIAADSNDNIYFGIKDGAFVLKHGATTPTKIDGITNKFIIDGKDNIYFGTKDEAFVLKQGTTTPTKINGIAGFRNIAVDSKDNIYFGTKDGLYKLKHGETTPTPINGISGAIKSLVVDKYNNNIYIKKDDGIYFTTTVLDWVKQQSQFALVDSTKTQTWTRPDLLSVDGELNIDIANPNIDKVVFDNVQQGQTNKHWTINVKPETAPRDHNLQVMFTLEGKQYTSEIIVSMQAKINPVVSSVKQNLSDLIKNIDLGNIFDNNDNTIFTAVNQKNHNIIDDFSQIEITNKDNHSATLTAKKDSKSYAGSVDVKYNVVPTTVVDLQIDLTPTSSQATVIKDYLGQIDTSNLTNPVNTFYYASSESIITMDKPTPSSVITGVVYGCDDKWNKTSQSSNIDSTNGIKLDGSQLATINGKYVVELSDNLGHTNNVYLQINEKKEKEIKEYWNTDNGKQFEIWAKANGYDNIRGYSASQLNNLFADSKNWQQLASDSQLASAVADRVKTSGKLSSTAPLTKEQVVEQLKTQIPSDIKIDKVNTSNYEKDKVSFVLNQSEFKPNDKVNITVKYNNATSEQFTLQIKDSNTPDNKKDGDSKLWIIGVVVGVLVVLGLVYLLFKKFVFDKYFLPKINKRRHDKLVEQVKKEEAEKDAQNNKGGEK
>NZ_CP047438.1|WP_147077835.1|13670_13940_+|hypothetical-protein
MMTLLATSGVNDLLNKILGIALPILIAIAVVSAIIMIGVYAIGGKFNADSSNRKETIKKVMWVLICLLIVILASAIVLAFKDTIAPITN
>NZ_CP047438.1|WP_164028424.1|13957_15517_+|hypothetical-protein
MRKRKQDNLTVIKSKKPILKQGLEQFVAYYFKKIFTIFAIAMIPLLIIGCIVIAILSAILWFLPNTEPATNIQSFFSNTLNVETVETTGGSNIMGDIIGWAINSFCAILYLIFIKPIVWLLGGMQDVVYFIGGGALSERLFSMNNISTIYWLLFGIAMAILIVIIGTKAIAWMYNNRRHEIKAAITNILIIIIAIPLIPTLFIMANTIMTMIVKLFLQNAPIDTNNIALAIFNSSFDNGVHHFSYIPVSWTFYDSGSFSYIICLVSECFMVYIMFTVCLFLFWRVIELFILLCYSPVVVVMSVTDQGQQFRNWKDMVLGRFISYAFMFITYNIFIMSIAVLGQVATFMPNSLSQPIFILLGIFAFGFAVAKSPQIITSLIGGNTAMSDSIGNLMSFGMATNLAKIGGKFAWKSGKFAARNAIGKPVGLTQGISSAMKGGTPFKDAAAGTLFGGFNPNTGGVASAFAGQAMKTKDKVMTNISDYQTFKEQRNQKNNKDSVLEQASTKTTKKDKGDKNNEK
>NZ_CP047438.1|WP_011270184.1|15506_18029_+|TraE-like-protein
MKNNPKIITKKASRVRFTVSNALGGIGWPELFIIFAAVVLITLSLTLLAKLSLLAGVITTVIVAILTIFLIAPNKNGEKLYYVIFVAIVFLFKNKNHKIENTNNIQIINNRVIFNKKQALIYKINAVDLTLSTQEERNTPIYDFSNYLRGLNFDFEIIKIDSKLNFDKNKNYLTQTLKQDSLKNSQKHQLNNFLSMSEYLENQDLKLEQNYYLIVFTNNDNKKLELSLLSYNQHLSLTLPTSEEIKKIVDKKIIPTNTAISTLPKTIKETANYLKLDNNKFVSYFTVNQFPLTVNDMWLSNFSEIENVNISLRVRHLDNMTAFKLLDRAIRRAQDQETKKASEDIEFNLYLQNFNELLQLIQVGGETLKMVSIIFTCFADSKNGLDQVVSNLKNEMIRNRFTINDLTFRQFETYKCLLFNNNDKLKNIEQEMATITLASAWPFPSKPLNDPQGLIMGENEQIQPIIFDIKTKSSIRASHNAFIVGQMGFGKTFNVKKQLNWLYCNNTKIYIIDPQREYGSFANYHGGEIIEFGNNPKAKINPLEIFTDNFSEHISLLEQWFKNLYSDLTNIELAKLQEYIIQLYKNFKITADTNLSQLTRKDYPILTDLYNLITKKEQDTLLEKMLWKLTKGADGTLFNGVSTLEIKSDLIVFDIYNMAKSKTIANAQMYLLLALLDRVMKKNKEDNLNLSPEQQSWVCIAVDEAHLLINQDNLLALNYLFSLSKTCRKFNGILFILTQSIGDFTQHGEEVKRQARGIIEQCTYQFIHHLNSIGLQNYIELLTDNNMINAYEKNVILTPKKGLCLFSINDKRYILQVIATSEEIKAIGTQEDINNLGKET
>NZ_CP047438.1|WP_011270185.1|18032_18371_+|hypothetical-protein
METKQNEWVTVNILARRKLKRETEKAVLFSIPKHKGLSVWINKKCIHGSRNGKIFAVGIKKNDEYTIWIYDADSKQHLKSEIWQGQYLINLYQCEWNKMLEAIKINQEALNK
>NZ_CP047438.1|WP_164028426.1|18466_19978_+|type-IV-secretion-system-DNA-binding-domain-containing-protein
MWKKIINWRDKNINNKIIYWFIFILVIPFILVCLINCASAIIIMFLKYHTLDFKNFHIAYADKYSWLISIILFIIAFLFFFWFYLCHKIDNMDSPKTKQQKLNKASDKEFKTLQLKMLALNKKYGIPKTNLTQHTLLVGTTGSGKTTTLMFLVKQLTQIFKQTTIIIDGKGDIDLIDKVKQQDPNAFIWEIGGTTEYNPFATKDSVVLSDKIMSLFDFSEPHYEALVNDYVLILTETLINNNVDLTLENIIKYFDISELKQLISKKDKNYEYLEKINEDDILGMRSRLNVYRQQLKTNIGNNNNLLELITKHKTILFSINSLMYPKLAGSVGKIIIQDLKELTTLKSVNQKINIVLDEFNVFASETIVNLINKSRSFNYQCFLSFQTINDLKINNMNLTDTIYGNVSTIVCHNIKDPNTAEYVASVFGTQETEKLTRQLDFKNNTADMGSVRAVDEFIVHPNDLKTLKTGECYLKTTLPSGKLFIKKIQVGPTCLDEFNSTFK
>NZ_CP047438.1|WP_164028428.1|20759_21410_+|hypothetical-protein
MQQIQQTEQLNYHFVEIGGLSYKVINQLDEKKHISNFYLPKKIVRQHPTRKDSYKVKIYDKFICVPKKMCFLDKTGKYFLVGLDMYFNYWIYNTRDNNKYRLAGYQAIKDTAIKELHYLTVSARRYEKEQATNPFLSGLTYQQARDQICAESDKLKAEYQNFVKNKYSANKLKNDLQENCSLVDDYNTVYEKNKGEPPEMSEEELTQLLVELDNLD

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Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP047438_1	1.1\|9597\|53\|NZ_CP047438\|CRISPRCasFinder	9597-9649	53	NZ_CP047433	Spiroplasma citri strain BLH-13 plasmid pSciBLH13-5, complete sequence	6653-6705	0	1.0
NZ_CP047438_1	1.1\|9597\|53\|NZ_CP047438\|CRISPRCasFinder	9597-9649	53	NZ_CP047438	Spiroplasma citri strain BLH-MB plasmid pSciBLHMB-1, complete sequence	9597-9649	0	1.0
NZ_CP047438_1	1.1\|9597\|53\|NZ_CP047438\|CRISPRCasFinder	9597-9649	53	NZ_CP031090	Spiroplasma phoeniceum P40 plasmid pSPh387, complete sequence	11572-11624	0	1.0
NZ_CP047438_1	1.1\|9597\|53\|NZ_CP047438\|CRISPRCasFinder	9597-9649	53	NC_007390	Spiroplasma citri pSci4 plasmid	1432-1484	1	0.981

1. spacer 1.1|9597|53|NZ_CP047438|CRISPRCasFinder matches to NZ_CP047433 (Spiroplasma citri strain BLH-13 plasmid pSciBLH13-5, complete sequence) position: , mismatch: 0, identity: 1.0

ataattatttatataaaaaaacttgattttaattatatttttgatattataat	CRISPR spacer
ataattatttatataaaaaaacttgattttaattatatttttgatattataat	Protospacer
*****************************************************

2. spacer 1.1|9597|53|NZ_CP047438|CRISPRCasFinder matches to NZ_CP047438 (Spiroplasma citri strain BLH-MB plasmid pSciBLHMB-1, complete sequence) position: , mismatch: 0, identity: 1.0

ataattatttatataaaaaaacttgattttaattatatttttgatattataat	CRISPR spacer
ataattatttatataaaaaaacttgattttaattatatttttgatattataat	Protospacer
*****************************************************

3. spacer 1.1|9597|53|NZ_CP047438|CRISPRCasFinder matches to NZ_CP031090 (Spiroplasma phoeniceum P40 plasmid pSPh387, complete sequence) position: , mismatch: 0, identity: 1.0

ataattatttatataaaaaaacttgattttaattatatttttgatattataat	CRISPR spacer
ataattatttatataaaaaaacttgattttaattatatttttgatattataat	Protospacer
*****************************************************

4. spacer 1.1|9597|53|NZ_CP047438|CRISPRCasFinder matches to NC_007390 (Spiroplasma citri pSci4 plasmid) position: , mismatch: 1, identity: 0.981

ataattatttatataaaaaaacttgattttaattatatttttgatattataat	CRISPR spacer
ataattatttatataaaaaaactttattttaattatatttttgatattataat	Protospacer
************************ ****************************

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site	Prophage annotation

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

133964 : 140077

Spiroplasma_virus(88.89%)

transposase

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_071890527.1\|133964_134114_+	hypothetical protein	A8RHI0	Spiroplasma_virus	2.4e-09	71.4
WP_071890530.1\|134113_134365_+	hypothetical protein	A8RHI2	Spiroplasma_virus	2.2e-31	85.5
WP_071890535.1\|135314_135674_+	hypothetical protein	NA	NA	NA	NA
WP_071890537.1\|135657_136107_+	DUF3627 domain-containing protein	A8RHI7	Spiroplasma_virus	3.0e-71	91.3
WP_071890543.1\|136260_136464_+	DUF2649 domain-containing protein	A8RHJ3	Spiroplasma_virus	3.4e-30	95.5
WP_071890544.1\|136463_137477_+	hypothetical protein	A8RHJ5	Spiroplasma_virus	3.4e-171	90.5
WP_015979226.1\|137469_137874_+	hypothetical protein	A8RHJ8	Spiroplasma_virus	3.8e-41	98.9
WP_015967964.1\|137873_138110_+	hypothetical protein	A8RHK0	Spiroplasma_virus	8.4e-33	98.7
WP_071890548.1\|138121_138733_+	DUF3688 family protein	A8RHK2	Spiroplasma_virus	2.3e-90	84.2
WP_071890551.1\|138707_138989_-	lipoprotein	NA	NA	NA	NA
WP_071890554.1\|139105_140077_+\|transposase	IS30 family transposase	Q9MBM9	Staphylococcus_prophage	8.9e-28	30.9

DBSCAN-SWA_2

482418 : 490565

Staphylococcus_phage(28.57%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_071937084.1\|482418_483288_+	thymidylate synthase	A0A0N9SH48	Staphylococcus_phage	1.0e-91	53.2
WP_071937085.1\|483287_483770_+	dihydrofolate reductase	A0A0N9S8H6	Staphylococcus_phage	1.6e-22	37.1
WP_071937086.1\|483771_484557_+	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA
WP_071937087.1\|484582_485893_+	thymidine phosphorylase	A0A0H3UZD4	Geobacillus_virus	2.0e-107	49.2
WP_071937088.1\|485993_486755_+	segregation/condensation protein A	NA	NA	NA	NA
WP_004028618.1\|486760_487309_+	SMC-Scp complex subunit ScpB	A0A1B1IVT7	uncultured_Mediterranean_phage	3.7e-15	31.6
WP_071937089.1\|487308_488046_+	rRNA pseudouridine synthase	NA	NA	NA	NA
WP_004028620.1\|488061_488670_+	deoxynucleoside kinase	A0A0M3UL55	Enterococcus_phage	8.9e-18	35.1
WP_071937090.1\|488772_489966_+\|transposase	IS3 family transposase	A0A1B1P773	Bacillus_phage	1.2e-29	34.1
WP_071937091.1\|490001_490565_-	inorganic diphosphatase	A0A2H4J8U1	uncultured_Caudovirales_phage	5.5e-22	38.6

DBSCAN-SWA_3

582486 : 636649

Staphylococcus_phage(14.29%)

capsid,tail,head,terminase,portal

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_157092846.1\|582486_583119_+\|tail	phage tail tape measure protein	NA	NA	NA	NA
WP_071937154.1\|583141_583519_+	hypothetical protein	NA	NA	NA	NA
WP_071937155.1\|583529_584456_+	hypothetical protein	NA	NA	NA	NA
WP_071937156.1\|584472_585663_+	hypothetical protein	NA	NA	NA	NA
WP_071937157.1\|586145_586688_+	Fic family protein	NA	NA	NA	NA
WP_071937158.1\|587225_587657_+	hypothetical protein	NA	NA	NA	NA
WP_071937159.1\|587646_588063_+	hypothetical protein	NA	NA	NA	NA
WP_071937160.1\|588228_588741_+	hypothetical protein	NA	NA	NA	NA
WP_071937161.1\|588831_590484_+	hypothetical protein	NA	NA	NA	NA
WP_053391401.1\|590507_590789_+	hypothetical protein	NA	NA	NA	NA
WP_071937162.1\|590769_590982_+	hypothetical protein	NA	NA	NA	NA
WP_071937163.1\|591020_591554_-	lipoprotein	NA	NA	NA	NA
WP_071937164.1\|591739_592195_+	hypothetical protein	NA	NA	NA	NA
WP_071937165.1\|592395_593718_+	hypothetical protein	NA	NA	NA	NA
WP_164028169.1\|593960_595814_+	ABC transporter permease subunit	NA	NA	NA	NA
WP_071937167.1\|595839_596829_+	ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	4.2e-17	28.5
WP_147076684.1\|597137_598448_-	hypothetical protein	NA	NA	NA	NA
WP_147077274.1\|598562_600299_+	hypothetical protein	NA	NA	NA	NA
WP_147077276.1\|600969_601473_+	lipoprotein	NA	NA	NA	NA
WP_147077278.1\|601515_603714_-	hypothetical protein	A8RHK2	Spiroplasma_virus	7.2e-09	36.5
WP_147077004.1\|603713_604970_-	hypothetical protein	NA	NA	NA	NA
WP_071890344.1\|604982_605258_-	hypothetical protein	NA	NA	NA	NA
WP_164028171.1\|605279_606515_-	hypothetical protein	NA	NA	NA	NA
WP_147076674.1\|606527_608138_-	hypothetical protein	NA	NA	NA	NA
WP_164028173.1\|608140_608482_-	hypothetical protein	NA	NA	NA	NA
WP_147076670.1\|608808_609960_-	hypothetical protein	NA	NA	NA	NA
WP_147076668.1\|609977_610436_-	hypothetical protein	NA	NA	NA	NA
WP_071891810.1\|610447_610846_-	hypothetical protein	NA	NA	NA	NA
WP_071890316.1\|610826_611318_-	hypothetical protein	NA	NA	NA	NA
WP_071890309.1\|611272_611557_-	hypothetical protein	NA	NA	NA	NA
WP_071890306.1\|611698_612106_-	hypothetical protein	NA	NA	NA	NA
WP_147077282.1\|612105_612504_-	hypothetical protein	NA	NA	NA	NA
WP_155522085.1\|613294_613438_+	hypothetical protein	NA	NA	NA	NA
WP_147076899.1\|613477_613900_+	pyridoxal-phosphate dependent enzyme	NA	NA	NA	NA
WP_147076901.1\|613797_614073_+	pyridoxal-phosphate dependent enzyme	NA	NA	NA	NA
WP_071937168.1\|614535_614919_+	reactive intermediate/imine deaminase	NA	NA	NA	NA
WP_071937169.1\|615977_616733_-	hypothetical protein	NA	NA	NA	NA
WP_164028175.1\|616923_617325_-	hypothetical protein	NA	NA	NA	NA
WP_071937171.1\|617451_617973_+	lipoprotein	NA	NA	NA	NA
WP_071937172.1\|618009_618222_-	hypothetical protein	NA	NA	NA	NA
WP_071937173.1\|618202_618484_-	hypothetical protein	NA	NA	NA	NA
WP_071937174.1\|618499_620128_-	hypothetical protein	NA	NA	NA	NA
WP_071937175.1\|620142_620745_-	hypothetical protein	NA	NA	NA	NA
WP_071937176.1\|621690_621948_-	hypothetical protein	NA	NA	NA	NA
WP_071937178.1\|622186_622618_-	DUF4065 domain-containing protein	NA	NA	NA	NA
WP_071937180.1\|623347_623863_-	DUF4065 domain-containing protein	A7J2B6	Streptococcus_phage	4.3e-05	25.2
WP_164028177.1\|624853_625738_-	hypothetical protein	NA	NA	NA	NA
WP_071937183.1\|625755_626682_-	hypothetical protein	NA	NA	NA	NA
WP_071937184.1\|626691_628239_-\|tail	phage tail tape measure protein	NA	NA	NA	NA
WP_071937185.1\|628426_628759_-	hypothetical protein	NA	NA	NA	NA
WP_071937186.1\|628751_629339_-	hypothetical protein	A6M958	Geobacillus_virus	4.5e-19	38.5
WP_071937187.1\|629354_629732_-	hypothetical protein	NA	NA	NA	NA
WP_071937188.1\|629737_630136_-	hypothetical protein	NA	NA	NA	NA
WP_071937189.1\|630146_630473_-	hypothetical protein	NA	NA	NA	NA
WP_071937190.1\|630462_630831_-\|head,tail	phage gp6-like head-tail connector protein	NA	NA	NA	NA
WP_164028179.1\|630854_632633_-\|capsid	phage major capsid protein	A0A1W6JQG3	Corynebacterium_phage	3.8e-08	29.1
WP_071937192.1\|632607_633810_-\|portal	phage portal protein	J9QE83	Clostridium_phage	1.0e-25	25.7
WP_071937193.1\|633981_634473_+	DUF4065 domain-containing protein	NA	NA	NA	NA
WP_071937194.1\|634453_634846_+	hypothetical protein	NA	NA	NA	NA
WP_071937195.1\|634945_636649_-\|terminase	terminase large subunit	A0A290GJW3	Caldibacillus_phage	7.4e-78	34.1

DBSCAN-SWA_4

798801 : 802397

Spiroplasma_virus(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_015967964.1\|798801_799038_-	hypothetical protein	A8RHK0	Spiroplasma_virus	8.4e-33	98.7
WP_071937327.1\|799037_799415_-	hypothetical protein	A8RHJ8	Spiroplasma_virus	4.3e-39	98.8
WP_071937328.1\|799407_800421_-	hypothetical protein	A8RHJ5	Spiroplasma_virus	7.5e-171	90.2
WP_071937329.1\|800614_800818_-	DUF2649 family protein	A8RHJ3	Spiroplasma_virus	1.2e-27	92.5
WP_164028235.1\|800820_800970_-	hypothetical protein	A8RHI9	Spiroplasma_virus	2.8e-10	87.8
WP_071937330.1\|800970_801420_-	DUF3627 domain-containing protein	A8RHI7	Spiroplasma_virus	2.5e-70	89.9
WP_164028237.1\|801403_801763_-	hypothetical protein	NA	NA	NA	NA
WP_071937332.1\|802145_802397_-	hypothetical protein	A8RHI2	Spiroplasma_virus	2.2e-31	86.7

DBSCAN-SWA_5

814259 : 871593

Spiroplasma_virus(64.71%)

capsid,tail,transposase,head,terminase,portal

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_071937343.1\|814259_814511_+	hypothetical protein	A8RHI2	Spiroplasma_virus	5.4e-30	86.7
WP_155522075.1\|816884_817034_+	hypothetical protein	NA	NA	NA	NA
WP_015979229.1\|817143_817293_+	hypothetical protein	A8RHI0	Spiroplasma_virus	3.1e-09	69.4
WP_015979230.1\|817292_817544_+	hypothetical protein	A8RHI2	Spiroplasma_virus	2.0e-32	88.0
WP_015979231.1\|817967_818207_+	hypothetical protein	NA	NA	NA	NA
WP_071890535.1\|818472_818832_+	hypothetical protein	NA	NA	NA	NA
WP_071937346.1\|818815_819265_+	DUF3627 domain-containing protein	A8RHI7	Spiroplasma_virus	3.9e-71	90.6
WP_164028235.1\|819265_819415_+	hypothetical protein	A8RHI9	Spiroplasma_virus	2.8e-10	87.8
WP_071890543.1\|819417_819621_+	DUF2649 domain-containing protein	A8RHJ3	Spiroplasma_virus	3.4e-30	95.5
WP_071937347.1\|819620_820634_+	hypothetical protein	A8RHJ5	Spiroplasma_virus	1.9e-169	89.3
WP_071937327.1\|820626_821004_+	hypothetical protein	A8RHJ8	Spiroplasma_virus	4.3e-39	98.8
WP_015967964.1\|821003_821240_+	hypothetical protein	A8RHK0	Spiroplasma_virus	8.4e-33	98.7
WP_071937348.1\|821251_823411_+	DUF3688 family protein	A8RHK2	Spiroplasma_virus	0.0e+00	83.3
WP_071937350.1\|826080_826359_+	hypothetical protein	A8RHJ8	Spiroplasma_virus	7.9e-14	51.6
WP_015979229.1\|826468_826618_+	hypothetical protein	A8RHI0	Spiroplasma_virus	3.1e-09	69.4
WP_015979230.1\|826617_826869_+	hypothetical protein	A8RHI2	Spiroplasma_virus	2.0e-32	88.0
WP_015979231.1\|827292_827532_+	hypothetical protein	NA	NA	NA	NA
WP_015979232.1\|827815_828157_+	hypothetical protein	NA	NA	NA	NA
WP_015979233.1\|828149_828590_+	DUF3627 domain-containing protein	A8RHI7	Spiroplasma_virus	2.1e-69	90.4
WP_015967972.1\|828590_828740_+	hypothetical protein	A8RHI9	Spiroplasma_virus	3.3e-11	100.0
WP_015979235.1\|828742_828946_+	DUF2649 domain-containing protein	A8RHJ3	Spiroplasma_virus	8.3e-29	94.0
WP_164028391.1\|828995_829958_+	hypothetical protein	A8RHJ5	Spiroplasma_virus	3.6e-162	91.2
WP_015979226.1\|829950_830355_+	hypothetical protein	A8RHJ8	Spiroplasma_virus	3.8e-41	98.9
WP_071937352.1\|830354_830591_+	hypothetical protein	A8RHK0	Spiroplasma_virus	1.6e-31	97.4
WP_071937353.1\|830602_832774_+	DUF3688 family protein	A8RHK2	Spiroplasma_virus	0.0e+00	82.4
WP_071937354.1\|832785_833235_-	lipoprotein	NA	NA	NA	NA
WP_071937355.1\|833347_834274_+\|transposase	IS30 family transposase	Q9MBM9	Staphylococcus_prophage	1.9e-27	31.7
WP_071938055.1\|836432_837470_+	hypothetical protein	NA	NA	NA	NA
WP_071937356.1\|837601_838390_+	hypothetical protein	NA	NA	NA	NA
WP_071937357.1\|839610_840327_-	hypothetical protein	NA	NA	NA	NA
WP_071937358.1\|840487_841798_+	deoxyribodipyrimidine photo-lyase	A0A1V0SGL1	Hokovirus	1.4e-68	35.2
WP_071937359.1\|842153_842405_-	hypothetical protein	A8RHI2	Spiroplasma_virus	2.6e-32	89.2
WP_071937360.1\|842656_843082_-	hypothetical protein	NA	NA	NA	NA
WP_071937361.1\|843074_844628_-	type I restriction-modification system subunit M	A0A2H4PQP4	Staphylococcus_phage	5.8e-138	49.8
WP_084566881.1\|844639_845098_-	hypothetical protein	NA	NA	NA	NA
WP_084566905.1\|845070_845373_-	hypothetical protein	NA	NA	NA	NA
WP_147077210.1\|845429_845558_-	hypothetical protein	X2JIV2	Bacillus_phage	5.2e-05	53.7
WP_071937362.1\|846034_846556_-	hypothetical protein	NA	NA	NA	NA
WP_071937363.1\|846563_847175_-	hypothetical protein	NA	NA	NA	NA
WP_084566882.1\|847164_847767_-	hypothetical protein	NA	NA	NA	NA
WP_071937364.1\|847774_849022_-	hypothetical protein	NA	NA	NA	NA
WP_164028242.1\|849579_849864_-	hypothetical protein	NA	NA	NA	NA
WP_071937151.1\|850554_850800_+	hypothetical protein	NA	NA	NA	NA
WP_053391433.1\|851245_851686_+	DUF3627 domain-containing protein	A8RHI7	Spiroplasma_virus	1.2e-53	77.3
WP_147077617.1\|851839_852583_+	hypothetical protein	E1AC06	Pseudoalteromonas_phage	9.2e-33	38.6
WP_053391431.1\|852601_852835_+	hypothetical protein	NA	NA	NA	NA
WP_164028244.1\|852803_853334_+	hypothetical protein	NA	NA	NA	NA
WP_071891731.1\|853477_853657_+	hypothetical protein	NA	NA	NA	NA
WP_155522072.1\|853670_853835_+	hypothetical protein	NA	NA	NA	NA
WP_053391429.1\|853836_854094_+	hypothetical protein	NA	NA	NA	NA
WP_155522097.1\|854095_854233_+	hypothetical protein	NA	NA	NA	NA
WP_157092867.1\|854235_854409_+	hypothetical protein	NA	NA	NA	NA
WP_084566906.1\|854428_854719_+	pentapeptide repeat-containing protein	NA	NA	NA	NA
WP_071891735.1\|854718_854925_+	hypothetical protein	NA	NA	NA	NA
WP_071891739.1\|854924_855197_+	hypothetical protein	NA	NA	NA	NA
WP_053391427.1\|855196_855874_+	hypothetical protein	NA	NA	NA	NA
WP_071937572.1\|855879_856599_+	hypothetical protein	NA	NA	NA	NA
WP_053391425.1\|856689_857124_+	single-stranded DNA-binding protein	B8R683	Lactobacillus_phage	8.6e-15	39.8
WP_071937200.1\|857114_857357_+	hypothetical protein	NA	NA	NA	NA
WP_071937571.1\|857476_858331_+	hypothetical protein	A0A0A7RW37	Clostridium_phage	8.0e-41	41.2
WP_164023979.1\|858311_858689_+	HNH endonuclease	A0A0K2CYS9	Paenibacillus_phage	9.1e-05	29.5
WP_071937570.1\|858833_859013_+	hypothetical protein	NA	NA	NA	NA
WP_071937569.1\|859035_860847_+	AAA family ATPase	NA	NA	NA	NA
WP_071937568.1\|861120_861624_+	hypothetical protein	NA	NA	NA	NA
WP_071937117.1\|861626_863330_+\|terminase	terminase large subunit	A0A290GJW3	Caldibacillus_phage	3.3e-78	34.3
WP_071937567.1\|863429_863822_-	hypothetical protein	NA	NA	NA	NA
WP_071937193.1\|863802_864294_-	DUF4065 domain-containing protein	NA	NA	NA	NA
WP_071937192.1\|864465_865668_+\|portal	phage portal protein	J9QE83	Clostridium_phage	1.0e-25	25.7
WP_164028246.1\|865642_867430_+\|capsid	phage major capsid protein	A0A1W6JQG3	Corynebacterium_phage	3.8e-08	29.1
WP_071937190.1\|867453_867822_+\|head,tail	phage gp6-like head-tail connector protein	NA	NA	NA	NA
WP_071937189.1\|867811_868138_+	hypothetical protein	NA	NA	NA	NA
WP_071937188.1\|868148_868547_+	hypothetical protein	NA	NA	NA	NA
WP_071937187.1\|868552_868930_+	hypothetical protein	NA	NA	NA	NA
WP_071937186.1\|868945_869533_+	hypothetical protein	A6M958	Geobacillus_virus	4.5e-19	38.5
WP_071937185.1\|869525_869858_+	hypothetical protein	NA	NA	NA	NA
WP_071937184.1\|870045_871593_+\|tail	phage tail tape measure protein	NA	NA	NA	NA

DBSCAN-SWA_6

1024291 : 1034469

Spiroplasma_virus(90.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_084566885.1\|1024291_1026229_-	DNA topoisomerase IV subunit B	G3M9Z3	Bacillus_virus	6.6e-115	41.6
WP_071937452.1\|1026353_1027157_+	glycerol-3-phosphate 1-O-acyltransferase PlsY	NA	NA	NA	NA
WP_155522119.1\|1027906_1028056_+	hypothetical protein	NA	NA	NA	NA
WP_071937130.1\|1028160_1028310_+	hypothetical protein	A8RHI0	Spiroplasma_virus	5.7e-11	75.5
WP_164028297.1\|1028309_1028561_+	hypothetical protein	A8RHI2	Spiroplasma_virus	7.6e-32	86.7
WP_071890535.1\|1029515_1029875_+	hypothetical protein	NA	NA	NA	NA
WP_071937455.1\|1029858_1030308_+	DUF3627 domain-containing protein	A8RHI7	Spiroplasma_virus	5.7e-70	89.9
WP_164028235.1\|1030308_1030458_+	hypothetical protein	A8RHI9	Spiroplasma_virus	2.8e-10	87.8
WP_071890543.1\|1030460_1030664_+	DUF2649 domain-containing protein	A8RHJ3	Spiroplasma_virus	3.4e-30	95.5
WP_071937347.1\|1030663_1031677_+	hypothetical protein	A8RHJ5	Spiroplasma_virus	1.9e-169	89.3
WP_071937327.1\|1031669_1032047_+	hypothetical protein	A8RHJ8	Spiroplasma_virus	4.3e-39	98.8
WP_015967964.1\|1032046_1032283_+	hypothetical protein	A8RHK0	Spiroplasma_virus	8.4e-33	98.7
WP_071937456.1\|1032294_1034469_+	DUF3688 family protein	A8RHK2	Spiroplasma_virus	0.0e+00	84.5

DBSCAN-SWA_7

1044038 : 1055388

Spiroplasma_virus(75.0%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_155522121.1\|1044038_1044176_-	hypothetical protein	A8RHK0	Spiroplasma_virus	1.4e-16	95.6
WP_071937463.1\|1044454_1044691_+	hypothetical protein	A8RHK0	Spiroplasma_virus	1.6e-31	94.9
WP_071937464.1\|1044702_1044900_+	hypothetical protein	NA	NA	NA	NA
WP_071937465.1\|1045663_1045879_-	hypothetical protein	NA	NA	NA	NA
WP_071937466.1\|1046423_1046573_+	hypothetical protein	A8RHI0	Spiroplasma_virus	6.1e-13	79.6
WP_071937359.1\|1046572_1046824_+	hypothetical protein	A8RHI2	Spiroplasma_virus	2.6e-32	89.2
WP_084566886.1\|1047906_1048347_+	DUF3627 domain-containing protein	A8RHI7	Spiroplasma_virus	4.2e-70	88.4
WP_164023992.1\|1048347_1048497_+	hypothetical protein	A8RHI9	Spiroplasma_virus	2.9e-07	67.3
WP_071937469.1\|1048499_1048703_+	DUF2649 domain-containing protein	A8RHJ3	Spiroplasma_virus	3.4e-30	95.5
WP_015979226.1\|1049710_1050115_+	hypothetical protein	A8RHJ8	Spiroplasma_virus	3.8e-41	98.9
WP_071937470.1\|1050114_1050351_+	hypothetical protein	A8RHK0	Spiroplasma_virus	1.6e-31	94.9
WP_162302564.1\|1050412_1050565_+	DUF3688 family protein	NA	NA	NA	NA
WP_147077290.1\|1050645_1051185_+	hypothetical protein	Q9QTG8	Spiroplasma_phage	5.0e-97	95.0
WP_071937472.1\|1051539_1051779_+	hypothetical protein	Q9QTI0	Spiroplasma_phage	3.1e-27	88.5
WP_071937475.1\|1053654_1055388_-\|tRNA	aspartate--tRNA ligase	A0A1V0SIS0	Klosneuvirus	3.8e-05	56.4

DBSCAN-SWA_8

1061428 : 1073932

Spiroplasma_virus(66.67%)

integrase,transposase

attL 1054274:1054289|attR 1071156:1071171

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1054274:1054289	attL	NA	NA	NA	NA
WP_071937482.1\|1061428_1062514_-\|integrase,transposase	DDE-type integrase/transposase/recombinase	A8RHK4	Spiroplasma_virus	2.6e-177	88.6
WP_071937484.1\|1065263_1065500_-	hypothetical protein	A8RHK0	Spiroplasma_virus	2.4e-32	97.4
WP_071937327.1\|1065499_1065877_-	hypothetical protein	A8RHJ8	Spiroplasma_virus	4.3e-39	98.8
WP_071890543.1\|1066883_1067087_-	DUF2649 domain-containing protein	A8RHJ3	Spiroplasma_virus	3.4e-30	95.5
WP_155522122.1\|1067089_1067239_-	hypothetical protein	A8RHI9	Spiroplasma_virus	1.4e-09	85.7
WP_164028301.1\|1067225_1067597_-	hypothetical protein	NA	NA	NA	NA
WP_084566887.1\|1067621_1068035_-	DUF3627 domain-containing protein	A8RHI7	Spiroplasma_virus	1.4e-62	90.4
WP_071937487.1\|1068027_1068363_-	hypothetical protein	NA	NA	NA	NA
WP_071937488.1\|1068355_1068715_-	hypothetical protein	NA	NA	NA	NA
WP_071938058.1\|1069078_1069270_-	hypothetical protein	A8RHI2	Spiroplasma_virus	3.7e-23	88.9
WP_071937489.1\|1069342_1069480_-	hypothetical protein	A8RHI0	Spiroplasma_virus	6.4e-09	73.3
WP_071937491.1\|1069804_1070098_-	hypothetical protein	A0A2H4JCY8	uncultured_Caudovirales_phage	7.3e-10	44.6
WP_071937492.1\|1070217_1070460_-	hypothetical protein	NA	NA	NA	NA
WP_071937493.1\|1070581_1071181_-	hypothetical protein	A0A290GJW3	Caldibacillus_phage	4.8e-24	38.1
1071156:1071171	attR	NA	NA	NA	NA
WP_071937494.1\|1071183_1071666_-	hypothetical protein	NA	NA	NA	NA
WP_147077328.1\|1071936_1072458_-	hypothetical protein	NA	NA	NA	NA
WP_155522124.1\|1072691_1072850_-	hypothetical protein	NA	NA	NA	NA
WP_164023995.1\|1072980_1073358_-	HNH endonuclease	A0A0K2CYS9	Paenibacillus_phage	5.3e-05	29.5
WP_071937497.1\|1073338_1073932_-	hypothetical protein	A0A0A7RW37	Clostridium_phage	3.0e-26	44.4

DBSCAN-SWA_9

1145369 : 1153134

Staphylococcus_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_071937586.1\|1145369_1145804_+	single-stranded DNA-binding protein	A7DYE1	Streptococcus_phage	3.7e-10	37.6
WP_071937587.1\|1145794_1146037_+	hypothetical protein	NA	NA	NA	NA
WP_164028307.1\|1146156_1147011_+	recombinase RecT	A0A0B5D0I3	Listeria_phage	5.8e-39	43.7
WP_164024015.1\|1146991_1147369_+	HNH endonuclease	A0A1B0YEC6	Lactobacillus_phage	1.6e-12	42.6
WP_155522132.1\|1147352_1147496_+	hypothetical protein	NA	NA	NA	NA
WP_071937570.1\|1147514_1147694_+	hypothetical protein	NA	NA	NA	NA
WP_071937590.1\|1148061_1150443_+	N-6 DNA methylase	A0A1W6JNK1	Staphylococcus_phage	4.8e-67	34.4
WP_164028310.1\|1150922_1151426_+	hypothetical protein	NA	NA	NA	NA
WP_071937591.1\|1151428_1151821_+	hypothetical protein	A0A290GJW3	Caldibacillus_phage	2.5e-13	39.8
WP_071937592.1\|1151892_1153134_+	hypothetical protein	B5WZP1	Staphylococcus_phage	5.1e-52	33.0

DBSCAN-SWA_10

1170595 : 1182522

Spiroplasma_virus(94.12%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_071937609.1\|1170595_1170832_-	hypothetical protein	A8RHK0	Spiroplasma_virus	1.0e-30	96.2
WP_071937610.1\|1170831_1171227_-	hypothetical protein	A8RHJ8	Spiroplasma_virus	8.3e-41	96.6
WP_071937611.1\|1172230_1172434_-	DUF2649 family protein	A8RHJ3	Spiroplasma_virus	2.4e-28	92.5
WP_164024019.1\|1172436_1172586_-	hypothetical protein	A8RHI9	Spiroplasma_virus	9.7e-11	89.8
WP_164028312.1\|1172586_1173048_-	DUF3627 domain-containing protein	A8RHI7	Spiroplasma_virus	1.6e-67	86.3
WP_155522119.1\|1173498_1173648_+	hypothetical protein	NA	NA	NA	NA
WP_071937614.1\|1173752_1173902_+	hypothetical protein	A8RHI0	Spiroplasma_virus	5.3e-09	69.4
WP_071937131.1\|1173901_1174153_+	hypothetical protein	A8RHI2	Spiroplasma_virus	2.6e-32	88.0
WP_071937615.1\|1175091_1175373_+	hypothetical protein	A8RHI5	Spiroplasma_virus	2.4e-10	61.3
WP_071937616.1\|1175410_1175860_+	DUF3627 domain-containing protein	A8RHI7	Spiroplasma_virus	7.9e-72	91.3
WP_015967972.1\|1175860_1176010_+	hypothetical protein	A8RHI9	Spiroplasma_virus	3.3e-11	100.0
WP_071937469.1\|1176012_1176216_+	DUF2649 domain-containing protein	A8RHJ3	Spiroplasma_virus	3.4e-30	95.5
WP_071937617.1\|1177223_1177565_+	hypothetical protein	A8RHJ8	Spiroplasma_virus	1.2e-40	97.7
WP_015967964.1\|1177564_1177801_+	hypothetical protein	A8RHK0	Spiroplasma_virus	8.4e-33	98.7
WP_164028314.1\|1177812_1179939_+	DUF3688 family protein	A8RHK2	Spiroplasma_virus	0.0e+00	84.3
WP_071937619.1\|1179953_1180355_-	lipoprotein	NA	NA	NA	NA
WP_015979228.1\|1180469_1181438_+\|transposase	IS30 family transposase	H7BWC8	unidentified_phage	3.0e-15	27.4
WP_071937620.1\|1182121_1182373_-	hypothetical protein	A8RHI2	Spiroplasma_virus	2.0e-32	88.0
WP_071890527.1\|1182372_1182522_-	hypothetical protein	A8RHI0	Spiroplasma_virus	2.4e-09	71.4

DBSCAN-SWA_11

1245039 : 1254577

Spiroplasma_virus(90.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_071890527.1\|1245039_1245189_+	hypothetical protein	A8RHI0	Spiroplasma_virus	2.4e-09	71.4
WP_071937131.1\|1245188_1245440_+	hypothetical protein	A8RHI2	Spiroplasma_virus	2.6e-32	88.0
WP_015979231.1\|1245863_1246103_+	hypothetical protein	NA	NA	NA	NA
WP_071937671.1\|1246472_1246832_+	hypothetical protein	NA	NA	NA	NA
WP_015979233.1\|1246824_1247265_+	DUF3627 domain-containing protein	A8RHI7	Spiroplasma_virus	2.1e-69	90.4
WP_015967972.1\|1247265_1247415_+	hypothetical protein	A8RHI9	Spiroplasma_virus	3.3e-11	100.0
WP_015979235.1\|1247417_1247621_+	DUF2649 domain-containing protein	A8RHJ3	Spiroplasma_virus	8.3e-29	94.0
WP_071937672.1\|1248625_1248967_+	hypothetical protein	A8RHJ8	Spiroplasma_virus	1.2e-40	96.6
WP_071937673.1\|1248966_1249203_+	hypothetical protein	A8RHK0	Spiroplasma_virus	3.2e-32	96.2
WP_071937674.1\|1249214_1251419_+	DUF3688 family protein	A8RHK2	Spiroplasma_virus	0.0e+00	85.0
WP_071937675.1\|1251445_1251913_-	DUF3688 family protein	A8RHK2	Spiroplasma_virus	1.9e-12	41.4
WP_071937676.1\|1253424_1253784_-	50S ribosomal protein L20	NA	NA	NA	NA
WP_071937677.1\|1253807_1254002_-	50S ribosomal protein L35	NA	NA	NA	NA
WP_004028189.1\|1254046_1254577_-	translation initiation factor IF-3	A0A2L0UZ54	Agrobacterium_phage	9.5e-08	28.5

DBSCAN-SWA_12

1258988 : 1291288

Spiroplasma_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_071937684.1\|1258988_1259279_-	PTS lactose/cellobiose transporter subunit IIA	Q9QTH0	Spiroplasma_phage	3.4e-07	96.3
WP_071937685.1\|1259677_1259860_-	hypothetical protein	Q9QTH2	Spiroplasma_phage	3.7e-20	85.0
WP_071937686.1\|1260199_1260439_-	hypothetical protein	Q3ZVE8	Spiroplasma_phage	7.2e-32	98.7
WP_071937687.1\|1260438_1260729_-	hypothetical protein	Q3ZVE9	Spiroplasma_phage	4.5e-44	95.8
WP_071937688.1\|1261740_1261938_-	hypothetical protein	NA	NA	NA	NA
WP_147077751.1\|1262166_1262358_-	hypothetical protein	Q3ZVF2	Spiroplasma_phage	5.6e-27	98.4
WP_155522136.1\|1262444_1262618_-	hypothetical protein	Q3ZVF3	Spiroplasma_phage	1.7e-19	100.0
WP_071937689.1\|1262802_1263072_-	hypothetical protein	Q3ZVF5	Spiroplasma_phage	7.3e-41	94.4
WP_071937690.1\|1263400_1263715_-	hypothetical protein	Q3ZVF6	Spiroplasma_phage	2.3e-46	91.3
WP_071937691.1\|1264147_1264651_-	hypothetical protein	Q3ZVF7	Spiroplasma_phage	1.6e-68	80.9
WP_071937692.1\|1264666_1265089_-	hypothetical protein	Q3ZVF7	Spiroplasma_phage	2.6e-61	83.0
WP_071937693.1\|1265228_1265507_-	hypothetical protein	NA	NA	NA	NA
WP_071937694.1\|1265631_1266474_-	hypothetical protein	Q3ZVF7	Spiroplasma_phage	3.3e-148	92.8
WP_071937695.1\|1266614_1267154_-	hypothetical protein	NA	NA	NA	NA
WP_071937738.1\|1267399_1268803_-	DUF3688 family protein	Q9QTH9	Spiroplasma_phage	5.4e-135	66.5
WP_071937737.1\|1268815_1269052_-	hypothetical protein	Q9QTI0	Spiroplasma_phage	1.8e-30	93.5
WP_164028326.1\|1269406_1270417_-	hypothetical protein	Q9QTG8	Spiroplasma_phage	3.5e-168	93.8
WP_071937699.1\|1270421_1270631_-	DUF2649 family protein	Q9QTG9	Spiroplasma_phage	2.5e-12	98.6
WP_071937700.1\|1270851_1271055_-	hypothetical protein	Q9QTH1	Spiroplasma_phage	2.0e-06	71.8
WP_071937701.1\|1271187_1271379_-	hypothetical protein	Q9QTH2	Spiroplasma_phage	6.6e-20	86.4
WP_164028328.1\|1271378_1271606_-	hypothetical protein	Q9QTH4	Spiroplasma_phage	1.4e-29	93.1
WP_164028330.1\|1271892_1272390_-	hypothetical protein	Q3ZVF7	Spiroplasma_phage	2.5e-34	47.6
WP_164028332.1\|1272391_1272715_-	hypothetical protein	Q3ZVF6	Spiroplasma_phage	5.0e-44	84.1
WP_164028334.1\|1273443_1273740_-	hypothetical protein	Q3ZVF7	Spiroplasma_phage	6.8e-40	79.8
WP_164028336.1\|1274027_1274450_-	hypothetical protein	Q3ZVF7	Spiroplasma_phage	1.1e-64	86.7
WP_164028338.1\|1274776_1276180_-	DUF3688 family protein	Q9QTH9	Spiroplasma_phage	9.2e-135	66.5
WP_164028340.1\|1276193_1276430_-	hypothetical protein	Q9QTI0	Spiroplasma_phage	6.7e-30	90.9
WP_071937699.1\|1277798_1278008_-	DUF2649 family protein	Q9QTG9	Spiroplasma_phage	2.5e-12	98.6
WP_071937700.1\|1278228_1278432_-	hypothetical protein	Q9QTH1	Spiroplasma_phage	2.0e-06	71.8
WP_071937701.1\|1278563_1278755_-	hypothetical protein	Q9QTH2	Spiroplasma_phage	6.6e-20	86.4
WP_164028342.1\|1278754_1278982_-	hypothetical protein	Q9QTH4	Spiroplasma_phage	2.7e-28	91.7
WP_164028344.1\|1279180_1279531_-	hypothetical protein	Q3ZVF6	Spiroplasma_phage	5.6e-17	41.5
WP_164028346.1\|1281093_1281618_-	hypothetical protein	NA	NA	NA	NA
WP_164028349.1\|1281823_1283227_-	DUF3688 family protein	Q9QTH9	Spiroplasma_phage	5.8e-137	67.0
WP_105298387.1\|1283240_1283477_-	hypothetical protein	Q9QTI0	Spiroplasma_phage	2.3e-30	93.5
WP_147077518.1\|1283581_1283839_-	hypothetical protein	Q9QTI1	Spiroplasma_phage	2.3e-31	92.2
WP_147077519.1\|1283831_1284842_-	hypothetical protein	Q9QTG8	Spiroplasma_phage	1.4e-172	95.8
WP_071937699.1\|1284846_1285056_-	DUF2649 family protein	Q9QTG9	Spiroplasma_phage	2.5e-12	98.6
WP_147077521.1\|1285276_1285480_-	hypothetical protein	Q3ZVF2	Spiroplasma_phage	3.4e-14	65.6
WP_071937701.1\|1285611_1285803_-	hypothetical protein	Q9QTH2	Spiroplasma_phage	6.6e-20	86.4
WP_147077523.1\|1285815_1286031_-	hypothetical protein	Q9QTH4	Spiroplasma_phage	7.7e-25	86.8
WP_147077525.1\|1286361_1286676_-	hypothetical protein	Q3ZVF6	Spiroplasma_phage	1.0e-49	94.2
WP_164028351.1\|1287029_1288037_-	plectrovirus svts2 rep protein	Q3ZVF7	Spiroplasma_phage	4.2e-166	84.6
WP_164028354.1\|1288273_1289668_-	hypothetical protein	NA	NA	NA	NA
WP_157092892.1\|1289884_1291288_-	DUF3688 family protein	Q9QTH9	Spiroplasma_phage	2.4e-135	65.9

DBSCAN-SWA_13

1300080 : 1306095

Spiroplasma_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_071937713.1\|1300080_1301133_-	hypothetical protein	Q3ZVF7	Spiroplasma_phage	4.2e-108	59.8
WP_157092874.1\|1301367_1302771_-	DUF3688 family protein	Q9QTH9	Spiroplasma_phage	1.9e-135	66.8
WP_071937697.1\|1302784_1303021_-	hypothetical protein	Q9QTI0	Spiroplasma_phage	2.3e-30	92.2
WP_071937715.1\|1303375_1304386_-	hypothetical protein	Q9QTG8	Spiroplasma_phage	6.8e-172	95.8
WP_071937716.1\|1304390_1304600_-	DUF2649 family protein	Q9QTG9	Spiroplasma_phage	2.8e-11	95.7
WP_071937717.1\|1305172_1305355_-	hypothetical protein	Q9QTH2	Spiroplasma_phage	2.2e-20	86.7
WP_071937718.1\|1305354_1305582_-	hypothetical protein	Q9QTH4	Spiroplasma_phage	3.8e-30	94.4
WP_071937719.1\|1305780_1306095_-	hypothetical protein	Q3ZVF6	Spiroplasma_phage	1.2e-50	96.2

DBSCAN-SWA_14

1309346 : 1316705

Spiroplasma_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_071937723.1\|1309346_1309556_+	DUF2649 family protein	Q9QTG9	Spiroplasma_phage	2.5e-12	98.6
WP_071937724.1\|1310926_1311163_+	hypothetical protein	Q9QTI0	Spiroplasma_phage	1.5e-29	92.2
WP_164028358.1\|1311175_1312579_+	DUF3688 family protein	Q9QTH9	Spiroplasma_phage	6.4e-136	66.2
WP_071937752.1\|1312808_1313348_+	hypothetical protein	NA	NA	NA	NA
WP_071937753.1\|1313579_1313933_+	hypothetical protein	Q3ZVF7	Spiroplasma_phage	1.2e-43	72.6
WP_071937754.1\|1313939_1314563_+	hypothetical protein	Q3ZVF7	Spiroplasma_phage	7.8e-86	77.2
WP_071937755.1\|1314953_1315172_+	hypothetical protein	NA	NA	NA	NA
WP_071937756.1\|1315143_1315332_+	hypothetical protein	NA	NA	NA	NA
WP_071937757.1\|1315530_1315758_+	hypothetical protein	Q9QTH4	Spiroplasma_phage	5.4e-29	93.1
WP_071937758.1\|1315757_1315940_+	hypothetical protein	Q9QTH2	Spiroplasma_phage	4.8e-20	85.0
WP_071937759.1\|1316071_1316275_+	hypothetical protein	NA	NA	NA	NA
WP_071937760.1\|1316495_1316705_+	DUF2649 family protein	Q9QTG9	Spiroplasma_phage	8.0e-11	97.1

DBSCAN-SWA_15

1348431 : 1354930

Spiroplasma_virus(85.71%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004027657.1\|1348431_1348716_-	HU family DNA-binding protein	A7KV42	Bacillus_phage	4.4e-12	49.4
WP_155522142.1\|1350712_1350862_+	hypothetical protein	NA	NA	NA	NA
WP_071937780.1\|1350965_1351115_+	hypothetical protein	A8RHI0	Spiroplasma_virus	4.5e-08	70.2
WP_071937632.1\|1351114_1351366_+	hypothetical protein	A8RHI2	Spiroplasma_virus	5.2e-33	90.4
WP_071937781.1\|1351926_1352289_+	hypothetical protein	NA	NA	NA	NA
WP_164024034.1\|1352732_1352882_+	hypothetical protein	A8RHI9	Spiroplasma_virus	1.7e-10	95.9
WP_071937782.1\|1352884_1353088_+	DUF2649 family protein	A8RHJ3	Spiroplasma_virus	2.2e-29	94.0
WP_071937783.1\|1354289_1354694_+	hypothetical protein	A8RHJ8	Spiroplasma_virus	4.2e-40	97.7
WP_071937784.1\|1354693_1354930_+	hypothetical protein	A8RHK0	Spiroplasma_virus	7.1e-32	97.4

DBSCAN-SWA_16

1426176 : 1429996

Spiroplasma_virus(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_015967964.1\|1426176_1426413_-	hypothetical protein	A8RHK0	Spiroplasma_virus	8.4e-33	98.7
WP_071937327.1\|1426412_1426790_-	hypothetical protein	A8RHJ8	Spiroplasma_virus	4.3e-39	98.8
WP_071937852.1\|1426782_1427796_-	hypothetical protein	A8RHJ5	Spiroplasma_virus	6.4e-170	89.6
WP_071890543.1\|1427795_1427999_-	DUF2649 domain-containing protein	A8RHJ3	Spiroplasma_virus	3.4e-30	95.5
WP_164028235.1\|1428001_1428151_-	hypothetical protein	A8RHI9	Spiroplasma_virus	2.8e-10	87.8
WP_071937853.1\|1428151_1428595_-	DUF3627 domain-containing protein	A8RHI7	Spiroplasma_virus	1.7e-63	83.9
WP_071937854.1\|1428578_1428938_-	hypothetical protein	NA	NA	NA	NA
WP_071937855.1\|1429595_1429847_-	hypothetical protein	A8RHI2	Spiroplasma_virus	1.2e-32	89.2
WP_071937856.1\|1429846_1429996_-	hypothetical protein	A8RHI0	Spiroplasma_virus	6.3e-10	73.5

DBSCAN-SWA_17

1450566 : 1481306

Caldibacillus_phage(16.67%)

capsid,tail,transposase,head,terminase,portal

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_071937867.1\|1450566_1452270_+\|terminase	terminase large subunit	A0A290GJW3	Caldibacillus_phage	1.1e-78	34.2
WP_071937869.1\|1452790_1453993_+\|portal	phage portal protein	J9QE83	Clostridium_phage	1.0e-25	25.7
WP_164028371.1\|1453967_1455755_+\|capsid	phage major capsid protein	A0A1W6JQG3	Corynebacterium_phage	1.1e-07	28.4
WP_071937190.1\|1455778_1456147_+\|head,tail	phage gp6-like head-tail connector protein	NA	NA	NA	NA
WP_071937189.1\|1456136_1456463_+	hypothetical protein	NA	NA	NA	NA
WP_071937188.1\|1456473_1456872_+	hypothetical protein	NA	NA	NA	NA
WP_071937187.1\|1456877_1457255_+	hypothetical protein	NA	NA	NA	NA
WP_071937186.1\|1457270_1457858_+	hypothetical protein	A6M958	Geobacillus_virus	4.5e-19	38.5
WP_071937185.1\|1457850_1458183_+	hypothetical protein	NA	NA	NA	NA
WP_071937184.1\|1458370_1459918_+\|tail	phage tail tape measure protein	NA	NA	NA	NA
WP_071937871.1\|1459927_1460854_+	hypothetical protein	NA	NA	NA	NA
WP_071937872.1\|1460871_1462323_+	hypothetical protein	NA	NA	NA	NA
WP_071937180.1\|1462746_1463262_+	DUF4065 domain-containing protein	A7J2B6	Streptococcus_phage	4.3e-05	25.2
WP_071937179.1\|1463278_1463653_+	hypothetical protein	NA	NA	NA	NA
WP_071937873.1\|1463904_1464315_+	hypothetical protein	NA	NA	NA	NA
WP_071937874.1\|1464535_1464991_+	hypothetical protein	NA	NA	NA	NA
WP_071937561.1\|1466200_1466803_+	hypothetical protein	NA	NA	NA	NA
WP_071937875.1\|1466818_1468444_+	hypothetical protein	NA	NA	NA	NA
WP_071937876.1\|1468459_1468741_+	hypothetical protein	NA	NA	NA	NA
WP_071937877.1\|1468721_1468934_+	hypothetical protein	NA	NA	NA	NA
WP_071937878.1\|1468971_1469490_-	lipoprotein	NA	NA	NA	NA
WP_164028175.1\|1469616_1470018_+	hypothetical protein	NA	NA	NA	NA
WP_071937879.1\|1470208_1471531_+	hypothetical protein	NA	NA	NA	NA
WP_071937880.1\|1471855_1472050_-	hypothetical protein	NA	NA	NA	NA
WP_071937881.1\|1472043_1473591_-	sodium-dependent transporter	NA	NA	NA	NA
WP_071937882.1\|1473647_1475300_-	hypothetical protein	NA	NA	NA	NA
WP_071937883.1\|1478675_1479041_-	PTS transporter subunit EIIB	NA	NA	NA	NA
WP_071937884.1\|1479043_1479850_-	NAD(+) kinase	NA	NA	NA	NA
WP_147077443.1\|1480313_1481306_-\|transposase	IS30 family transposase	H7BWC8	unidentified_phage	2.0e-19	28.2

DBSCAN-SWA_18

1512317 : 1518241

Spiroplasma_virus(85.71%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_071937891.1\|1512317_1512569_-	hypothetical protein	A8RHI2	Spiroplasma_virus	9.3e-30	86.7
WP_015979229.1\|1512568_1512718_-	hypothetical protein	A8RHI0	Spiroplasma_virus	3.1e-09	69.4
WP_164023930.1\|1512867_1513047_-	hypothetical protein	NA	NA	NA	NA
WP_071937892.1\|1515446_1516355_+	nicotinamide mononucleotide transporter	A0A2R4AM71	Aeromonas_phage	2.0e-13	28.6
WP_071890527.1\|1516967_1517117_+	hypothetical protein	A8RHI0	Spiroplasma_virus	2.4e-09	71.4
WP_071937131.1\|1517116_1517368_+	hypothetical protein	A8RHI2	Spiroplasma_virus	2.6e-32	88.0
WP_071937131.1\|1517840_1518092_-	hypothetical protein	A8RHI2	Spiroplasma_virus	2.6e-32	88.0
WP_071890527.1\|1518091_1518241_-	hypothetical protein	A8RHI0	Spiroplasma_virus	2.4e-09	71.4

DBSCAN-SWA_19

1590498 : 1599670

Spiroplasma_virus(85.71%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_071937945.1\|1590498_1590951_+	DUF3688 family protein	A8RHK2	Spiroplasma_virus	2.3e-10	41.1
WP_071937946.1\|1593117_1593354_-	hypothetical protein	A8RHK0	Spiroplasma_virus	1.9e-32	97.4
WP_071937947.1\|1593353_1593731_-	hypothetical protein	A8RHJ8	Spiroplasma_virus	4.8e-38	97.6
WP_071937948.1\|1594734_1594938_-	DUF2649 domain-containing protein	A8RHJ3	Spiroplasma_virus	1.3e-29	95.5
WP_084566901.1\|1595090_1595531_-	DUF3627 domain-containing protein	A8RHI7	Spiroplasma_virus	2.3e-68	91.1
WP_071937951.1\|1595877_1596117_-	hypothetical protein	NA	NA	NA	NA
WP_015967969.1\|1596595_1596745_-	hypothetical protein	A8RHI0	Spiroplasma_virus	1.2e-13	81.6
WP_071937952.1\|1598245_1599670_-\|tRNA	proline--tRNA ligase	A0A2K9L3R9	Tupanvirus	1.7e-96	39.8

DBSCAN-SWA_20

1627915 : 1635776

Spiroplasma_virus(90.91%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_071936912.1\|1627915_1628890_-\|transposase	IS30 family transposase	Q9MBM9	Staphylococcus_prophage	5.2e-28	31.5
WP_164028387.1\|1629006_1629483_+	DUF3688 family protein	A8RHK2	Spiroplasma_virus	3.3e-12	43.7
WP_071937973.1\|1629493_1631668_-	DUF3688 family protein	A8RHK2	Spiroplasma_virus	0.0e+00	84.2
WP_015967964.1\|1631679_1631916_-	hypothetical protein	A8RHK0	Spiroplasma_virus	8.4e-33	98.7
WP_071937327.1\|1631915_1632293_-	hypothetical protein	A8RHJ8	Spiroplasma_virus	4.3e-39	98.8
WP_071937347.1\|1632285_1633299_-	hypothetical protein	A8RHJ5	Spiroplasma_virus	1.9e-169	89.3
WP_071890543.1\|1633298_1633502_-	DUF2649 domain-containing protein	A8RHJ3	Spiroplasma_virus	3.4e-30	95.5
WP_164028235.1\|1633504_1633654_-	hypothetical protein	A8RHI9	Spiroplasma_virus	2.8e-10	87.8
WP_071937346.1\|1633654_1634104_-	DUF3627 domain-containing protein	A8RHI7	Spiroplasma_virus	3.9e-71	90.6
WP_071890535.1\|1634087_1634447_-	hypothetical protein	NA	NA	NA	NA
WP_015979231.1\|1634712_1634952_-	hypothetical protein	NA	NA	NA	NA
WP_015979230.1\|1635375_1635627_-	hypothetical protein	A8RHI2	Spiroplasma_virus	2.0e-32	88.0
WP_015979229.1\|1635626_1635776_-	hypothetical protein	A8RHI0	Spiroplasma_virus	3.1e-09	69.4

DBSCAN-SWA_21

1695349 : 1705984

Spiroplasma_virus(91.67%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_071936912.1\|1695349_1696324_-\|transposase	IS30 family transposase	Q9MBM9	Staphylococcus_prophage	5.2e-28	31.5
WP_071892025.1\|1696925_1699115_-	DUF3688 family protein	A8RHK2	Spiroplasma_virus	0.0e+00	83.6
WP_015967964.1\|1699126_1699363_-	hypothetical protein	A8RHK0	Spiroplasma_virus	8.4e-33	98.7
WP_015979226.1\|1699362_1699767_-	hypothetical protein	A8RHJ8	Spiroplasma_virus	3.8e-41	98.9
WP_071890544.1\|1699759_1700773_-	hypothetical protein	A8RHJ5	Spiroplasma_virus	3.4e-171	90.5
WP_071890543.1\|1700772_1700976_-	DUF2649 domain-containing protein	A8RHJ3	Spiroplasma_virus	3.4e-30	95.5
WP_164024074.1\|1700978_1701128_-	hypothetical protein	A8RHI9	Spiroplasma_virus	9.7e-11	98.0
WP_084566904.1\|1701128_1701569_-	DUF3627 domain-containing protein	A8RHI7	Spiroplasma_virus	6.8e-68	89.7
WP_015979232.1\|1701561_1701903_-	hypothetical protein	NA	NA	NA	NA
WP_015979231.1\|1702199_1702439_-	hypothetical protein	NA	NA	NA	NA
WP_015979230.1\|1702874_1703126_-	hypothetical protein	A8RHI2	Spiroplasma_virus	2.0e-32	88.0
WP_015979229.1\|1703125_1703275_-	hypothetical protein	A8RHI0	Spiroplasma_virus	3.1e-09	69.4
WP_155522075.1\|1703384_1703534_-	hypothetical protein	NA	NA	NA	NA
WP_071938017.1\|1703858_1704224_-	50S ribosomal protein L7/L12	NA	NA	NA	NA
WP_071938018.1\|1704279_1704771_-	50S ribosomal protein L10	NA	NA	NA	NA
WP_147077704.1\|1705584_1705764_+	hypothetical protein	A8RHI0	Spiroplasma_virus	5.2e-11	73.3
WP_071938019.1\|1705732_1705984_+	hypothetical protein	A8RHI2	Spiroplasma_virus	1.6e-29	85.5

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

3. NZ_CP047443

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NZ_CP047443_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP047443_1

4510-4616

Orphan

Consensus_repeat	Method
GAATGCTATGAGAAGTAAAATATTTTTAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP047443_1

>merge|NZ_CP047443|1|4510-4616|CRISPRCasFinder
GAATGCTATGAGAAGTAAAATATTTTTAATATTAAGAAAATAATTTTTTATAATTAATATTTTGCTTTGTTCTTGTTGGAATGCTATGAGAAGTAAAATATTTTTAA

>NZ_CP047443|1|1|4510-4616|CRISPRCasFinder
GAATGCTATGAGAAGTAAAATATTTTTAA	TATTAAGAAAATAATTTTTTATAATTAATATTTTGCTTTGTTCTTGTTG
GAATGCTATGAGAAGTAAAATATTTTTAA

>NZ_CP047443.1|WP_164028615.1|3605_3761_+|hypothetical-protein
MAERKSIFSQAKITSVGESISETLLNNENENKLNDVNNFEIKNIKLKKKFN
>NZ_CP047443.1|WP_164028612.1|3331_3472_+|hypothetical-protein
MWETISKKTKNWNNIKAIILNNFDSYSISKDFKFELEQLPSKKNFN
>NZ_CP047443.1|WP_164028610.1|2900_3113_+|AAA-family-ATPase
MSCFLSIEKKKRILLIDLDPQGNLTQCFKLDPPNPVAMDIFLEQDADIKIWFQNWFWKKNIIPTNIRWQI
>NZ_CP047443.1|WP_164028608.1|1836_2052_+|hypothetical-protein
MTPSTSKRTTRTVKRSFNEPQKNTDTKVSENDVISKFNSDYENKKYQSTEDKKRTVDINHLLNDLDGPMFN
>NZ_CP047443.1|WP_164028606.1|1436_1754_+|hypothetical-protein
MQELLIQNEYQAFNQLNPNKDISNIFTSKKNVKKNYTEKSNMVRFGTIYISSSKKFCHLDKNKENYLIGIKPHYTYNVYDAEKNWKEKITGKELMKNTTWLVFII
>NZ_CP047443.1|WP_164028604.1|53_437_+|hypothetical-protein
MINKEFKNIRDIKLEQKFINFNNFYIYQGNYYFNIYENNTLKVFTNDNNIANINIDKYKITRYKNNLVVLTVDKCFLLNLDSKNTTEFNLKNFDFDNSNSEFINSNFDKSNILFRNVDNVSLFVLNV

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP047443_1	1.1\|4539\|49\|NZ_CP047443\|CRISPRCasFinder	4539-4587	49	NZ_CP047443	Spiroplasma citri strain BLH-MB plasmid pSciBLHMB-6, complete sequence	4539-4587	0	1.0
NZ_CP047443_1	1.1\|4539\|49\|NZ_CP047443\|CRISPRCasFinder	4539-4587	49	NZ_CP053305	Spiroplasma citri strain C5 plasmid pScpC5-1, complete sequence	2692-2740	3	0.939
NZ_CP047443_1	1.1\|4539\|49\|NZ_CP047443\|CRISPRCasFinder	4539-4587	49	NC_007386	Spiroplasma citri plasmid pSciA strain GII3	3567-3615	3	0.939
NZ_CP047443_1	1.1\|4539\|49\|NZ_CP047443\|CRISPRCasFinder	4539-4587	49	NZ_CP047436	Spiroplasma citri strain BLH-13 plasmid pSciBLH13-8	1734-1782	3	0.939

1. spacer 1.1|4539|49|NZ_CP047443|CRISPRCasFinder matches to NZ_CP047443 (Spiroplasma citri strain BLH-MB plasmid pSciBLHMB-6, complete sequence) position: , mismatch: 0, identity: 1.0

tattaagaaaataattttttataattaatattttgctttgttcttgttg	CRISPR spacer
tattaagaaaataattttttataattaatattttgctttgttcttgttg	Protospacer
*************************************************

2. spacer 1.1|4539|49|NZ_CP047443|CRISPRCasFinder matches to NZ_CP053305 (Spiroplasma citri strain C5 plasmid pScpC5-1, complete sequence) position: , mismatch: 3, identity: 0.939

tattaagaaaat-aattttttataattaatattttgctttgttcttgttg	CRISPR spacer
-tttaagaaaataaattttttataattaatattttgctttgttcttgttt	Protospacer
  ********** ************************************

3. spacer 1.1|4539|49|NZ_CP047443|CRISPRCasFinder matches to NC_007386 (Spiroplasma citri plasmid pSciA strain GII3) position: , mismatch: 3, identity: 0.939

tattaagaaaat-aattttttataattaatattttgctttgttcttgttg	CRISPR spacer
-tttaagaaaataaattttttataattaatattttgctttgttcttgttt	Protospacer
  ********** ************************************

4. spacer 1.1|4539|49|NZ_CP047443|CRISPRCasFinder matches to NZ_CP047436 (Spiroplasma citri strain BLH-13 plasmid pSciBLH13-8) position: , mismatch: 3, identity: 0.939

tattaagaaaat-aattttttataattaatattttgctttgttcttgttg	CRISPR spacer
-tttaagaaaataaattttttataattaatattttgctttgttcttgttt	Protospacer
  ********** ************************************

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site	Prophage annotation

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

4. NZ_CP047446

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NZ_CP047446_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP047446_1

2167-2281

Orphan

Consensus_repeat	Method
ATAATTTATTACTTTTTTAATTGTGTCACTTGTGATTTTTG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP047446_1

>merge|NZ_CP047446|1|2167-2281|CRISPRCasFinder
ATAATTTATTACTTTTTTAATTGTGTCACTTGTGATTTTTGTGATATAATAATAAAAAATTAATAAATTAAAGCATAATTTATTACTTTTTTAATTGTGTCACTTGTGATTTTTG

>NZ_CP047446|1|1|2167-2281|CRISPRCasFinder
ATAATTTATTACTTTTTTAATTGTGTCACTTGTGATTTTTG	TGATATAATAATAAAAAATTAATAAATTAAAGC
ATAATTTATTACTTTTTTAATTGTGTCACTTGTGATTTTTG

>NZ_CP047446.1|WP_164028726.1|1600_1837_+|hypothetical-protein
MTEQIKIMDMINRWGYLNLEQVALLLNKNKNTVEKQLYILINKNIGVICDVWLKLKFCHFFKIWRWWILLFVAILSKW
>NZ_CP047446.1|WP_164028724.1|330_1002_+|hypothetical-protein
MQQIQQTEQLNYHFVEIGGLSYKVINQLDEKKHISNFYLPKKIVRQHPTRQDSYKVKIYDKFICVPKKMCFLDKTGKYFLVGLDMYFNYWIYNTHDNNKYRLAGYQAIKDTAIKELHYLTVSARRYEKEQATNPFLSGLTYQQARDQICAESDKLKAEYQTFVKNKYSAKNSENLLTRENNSLVDDYNTVYEKNKGNHQKCPKKNSPSYSGIRQPRLTPLPSS

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP047446_1	1.1\|2208\|33\|NZ_CP047446\|CRISPRCasFinder	2208-2240	33	NC_007101	Spiroplasma citri plasmid pBJS-O, complete sequence	729-761	0	1.0
NZ_CP047446_1	1.1\|2208\|33\|NZ_CP047446\|CRISPRCasFinder	2208-2240	33	NZ_CP047446	Spiroplasma citri strain BLH-MB plasmid pSciBLHMB-9	2208-2240	0	1.0
NZ_CP047446_1	1.1\|2208\|33\|NZ_CP047446\|CRISPRCasFinder	2208-2240	33	NZ_CP053306	Spiroplasma citri strain C5 plasmid pScpC5-2, complete sequence	287-319	0	1.0
NZ_CP047446_1	1.1\|2208\|33\|NZ_CP047446\|CRISPRCasFinder	2208-2240	33	NZ_CP053306	Spiroplasma citri strain C5 plasmid pScpC5-2, complete sequence	361-393	0	1.0
NZ_CP047446_1	1.1\|2208\|33\|NZ_CP047446\|CRISPRCasFinder	2208-2240	33	NZ_CP012424	Spiroplasma kunkelii CR2-3x plasmid pSKU205, complete sequence	20132-20164	2	0.939
NZ_CP047446_1	1.1\|2208\|33\|NZ_CP047446\|CRISPRCasFinder	2208-2240	33	MK765608	Tortoise microvirus 56 isolate 56_SP_86, complete genome	1680-1712	5	0.848
NZ_CP047446_1	1.1\|2208\|33\|NZ_CP047446\|CRISPRCasFinder	2208-2240	33	NZ_LR214986	Mycoplasma cynos strain NCTC10142 plasmid 13	832737-832769	6	0.818
NZ_CP047446_1	1.1\|2208\|33\|NZ_CP047446\|CRISPRCasFinder	2208-2240	33	NC_021623	Borrelia hermsii strain HS1 plasmid lp174, complete sequence	53228-53260	6	0.818
NZ_CP047446_1	1.1\|2208\|33\|NZ_CP047446\|CRISPRCasFinder	2208-2240	33	NZ_CP014350	Borrelia hermsii HS1 isolate Browne Mountain plasmid megaplasmid, complete sequence	57899-57931	6	0.818
NZ_CP047446_1	1.1\|2208\|33\|NZ_CP047446\|CRISPRCasFinder	2208-2240	33	KY744229	Sulfolobus islandicus rod-shaped virus 8, partial genome	15015-15047	7	0.788
NZ_CP047446_1	1.1\|2208\|33\|NZ_CP047446\|CRISPRCasFinder	2208-2240	33	KY744228	Sulfolobus islandicus rod-shaped virus 9, partial genome	13968-14000	7	0.788
NZ_CP047446_1	1.1\|2208\|33\|NZ_CP047446\|CRISPRCasFinder	2208-2240	33	NZ_CP022446	Bacillus cereus C1L plasmid pC1L1, complete sequence	102988-103020	7	0.788
NZ_CP047446_1	1.1\|2208\|33\|NZ_CP047446\|CRISPRCasFinder	2208-2240	33	LT960552	Yersinia phage fHe-Yen9-03 genome assembly, complete genome: monopartite	316940-316972	8	0.758
NZ_CP047446_1	1.1\|2208\|33\|NZ_CP047446\|CRISPRCasFinder	2208-2240	33	LR596615	Yersinia phage fHe-Yen9-04 genome assembly, chromosome: I	318991-319023	8	0.758
NZ_CP047446_1	1.1\|2208\|33\|NZ_CP047446\|CRISPRCasFinder	2208-2240	33	NC_042116	Yersinia phage fHe-Yen9-04 genome assembly, complete genome: monopartite	318991-319023	8	0.758
NZ_CP047446_1	1.1\|2208\|33\|NZ_CP047446\|CRISPRCasFinder	2208-2240	33	MH617769	Siphoviridae sp. isolate ctjc_2, complete genome	9008-9040	8	0.758
NZ_CP047446_1	1.1\|2208\|33\|NZ_CP047446\|CRISPRCasFinder	2208-2240	33	NZ_CP017256	Clostridium taeniosporum strain 1/k plasmid pCt3, complete sequence	66370-66402	8	0.758
NZ_CP047446_1	1.1\|2208\|33\|NZ_CP047446\|CRISPRCasFinder	2208-2240	33	NC_022090	Staphylococcus phage vB_SauM_Remus, complete genome	123829-123861	8	0.758
NZ_CP047446_1	1.1\|2208\|33\|NZ_CP047446\|CRISPRCasFinder	2208-2240	33	NC_020877	Staphylococcus phage vB_SauM_Romulus, complete genome	120518-120550	8	0.758
NZ_CP047446_1	1.1\|2208\|33\|NZ_CP047446\|CRISPRCasFinder	2208-2240	33	NC_013940	Deferribacter desulfuricans SSM1 megaplasmid pDF308, complete sequence	86647-86679	9	0.727
NZ_CP047446_1	1.1\|2208\|33\|NZ_CP047446\|CRISPRCasFinder	2208-2240	33	NZ_AP019824	Leptotrichia hofstadii strain JCM16775 plasmid pJCM16775-1, complete sequence	24724-24756	9	0.727
NZ_CP047446_1	1.1\|2208\|33\|NZ_CP047446\|CRISPRCasFinder	2208-2240	33	NZ_CP047429	Spiroplasma citri strain BLH-13 plasmid pSciBLH13-1, complete sequence	11655-11687	9	0.727
NZ_CP047446_1	1.1\|2208\|33\|NZ_CP047446\|CRISPRCasFinder	2208-2240	33	NZ_CP047434	Spiroplasma citri strain BLH-13 plasmid pSciBLH13-6	124872-124904	9	0.727
NZ_CP047446_1	1.1\|2208\|33\|NZ_CP047446\|CRISPRCasFinder	2208-2240	33	NZ_CP047434	Spiroplasma citri strain BLH-13 plasmid pSciBLH13-6	8300-8332	9	0.727
NZ_CP047446_1	1.1\|2208\|33\|NZ_CP047446\|CRISPRCasFinder	2208-2240	33	NZ_CP046373	Spiroplasma citri strain LB 319 plasmid pScpLB319-2, complete sequence	15025-15057	9	0.727
NZ_CP047446_1	1.1\|2208\|33\|NZ_CP047446\|CRISPRCasFinder	2208-2240	33	NZ_CP047438	Spiroplasma citri strain BLH-MB plasmid pSciBLHMB-1, complete sequence	48937-48969	9	0.727
NZ_CP047446_1	1.1\|2208\|33\|NZ_CP047446\|CRISPRCasFinder	2208-2240	33	NZ_CP047444	Spiroplasma citri strain BLH-MB plasmid pSciBLHMB-7	50300-50332	9	0.727
NZ_CP047446_1	1.1\|2208\|33\|NZ_CP047446\|CRISPRCasFinder	2208-2240	33	NZ_CP032206	Klebsiella pneumoniae strain AR_0109 plasmid unnamed1, complete sequence	33047-33079	9	0.727
NZ_CP047446_1	1.1\|2208\|33\|NZ_CP047446\|CRISPRCasFinder	2208-2240	33	NZ_CP043436	Campylobacter fetus subsp. venerealis NCTC 10354 plasmid p3226, complete sequence	6524-6556	10	0.697
NZ_CP047446_1	1.1\|2208\|33\|NZ_CP047446\|CRISPRCasFinder	2208-2240	33	NZ_CP008809	Campylobacter fetus subsp. fetus 04/554 plasmid pCFF04554, complete sequence	6601-6633	10	0.697
NZ_CP047446_1	1.1\|2208\|33\|NZ_CP047446\|CRISPRCasFinder	2208-2240	33	NZ_CP008812	Campylobacter fetus subsp. venerealis 97/608 plasmid pCFV97608-2, complete sequence	14063-14095	10	0.697
NZ_CP047446_1	1.1\|2208\|33\|NZ_CP047446\|CRISPRCasFinder	2208-2240	33	NZ_CP018792	Campylobacter sp. RM8964 plasmid pVIC8964, complete sequence	19908-19940	10	0.697
NZ_CP047446_1	1.1\|2208\|33\|NZ_CP047446\|CRISPRCasFinder	2208-2240	33	NZ_CP018794	Campylobacter sp. RM12175 plasmid pVIC12175-1, complete sequence	20172-20204	10	0.697
NZ_CP047446_1	1.1\|2208\|33\|NZ_CP047446\|CRISPRCasFinder	2208-2240	33	NZ_LR214973	Mycoplasma bovirhinis strain NCTC10118 plasmid 2	18198-18230	10	0.697
NZ_CP047446_1	1.1\|2208\|33\|NZ_CP047446\|CRISPRCasFinder	2208-2240	33	MK911750	Streptococcus phage P738, complete genome	23630-23662	10	0.697
NZ_CP047446_1	1.1\|2208\|33\|NZ_CP047446\|CRISPRCasFinder	2208-2240	33	NC_029119	Staphylococcus phage SPbeta-like, complete genome	28464-28496	10	0.697
NZ_CP047446_1	1.1\|2208\|33\|NZ_CP047446\|CRISPRCasFinder	2208-2240	33	NC_021796	Cellulophaga phage phi38:1, complete genome	39817-39849	11	0.667
NZ_CP047446_1	1.1\|2208\|33\|NZ_CP047446\|CRISPRCasFinder	2208-2240	33	KC821612	Cellulophaga phage phi40:1, complete genome	39812-39844	11	0.667

1. spacer 1.1|2208|33|NZ_CP047446|CRISPRCasFinder matches to NC_007101 (Spiroplasma citri plasmid pBJS-O, complete sequence) position: , mismatch: 0, identity: 1.0

tgatataataataaaaaattaataaattaaagc	CRISPR spacer
tgatataataataaaaaattaataaattaaagc	Protospacer
*********************************

2. spacer 1.1|2208|33|NZ_CP047446|CRISPRCasFinder matches to NZ_CP047446 (Spiroplasma citri strain BLH-MB plasmid pSciBLHMB-9) position: , mismatch: 0, identity: 1.0

tgatataataataaaaaattaataaattaaagc	CRISPR spacer
tgatataataataaaaaattaataaattaaagc	Protospacer
*********************************

3. spacer 1.1|2208|33|NZ_CP047446|CRISPRCasFinder matches to NZ_CP053306 (Spiroplasma citri strain C5 plasmid pScpC5-2, complete sequence) position: , mismatch: 0, identity: 1.0

tgatataataataaaaaattaataaattaaagc	CRISPR spacer
tgatataataataaaaaattaataaattaaagc	Protospacer
*********************************

4. spacer 1.1|2208|33|NZ_CP047446|CRISPRCasFinder matches to NZ_CP053306 (Spiroplasma citri strain C5 plasmid pScpC5-2, complete sequence) position: , mismatch: 0, identity: 1.0

tgatataataataaaaaattaataaattaaagc	CRISPR spacer
tgatataataataaaaaattaataaattaaagc	Protospacer
*********************************

5. spacer 1.1|2208|33|NZ_CP047446|CRISPRCasFinder matches to NZ_CP012424 (Spiroplasma kunkelii CR2-3x plasmid pSKU205, complete sequence) position: , mismatch: 2, identity: 0.939

tgatataataataaaaaattaataaattaaagc	CRISPR spacer
tgatataataataaaaaataaataaattaaaga	Protospacer
******************* ************

6. spacer 1.1|2208|33|NZ_CP047446|CRISPRCasFinder matches to MK765608 (Tortoise microvirus 56 isolate 56_SP_86, complete genome) position: , mismatch: 5, identity: 0.848

tgatataataataaaaaattaataaattaaagc	CRISPR spacer
ttccataataataaaaaattaaaaaattaaaga	Protospacer
*  .****************** *********

7. spacer 1.1|2208|33|NZ_CP047446|CRISPRCasFinder matches to NZ_LR214986 (Mycoplasma cynos strain NCTC10142 plasmid 13) position: , mismatch: 6, identity: 0.818

tgat-ataataataaaaaattaataaattaaagc	CRISPR spacer
-gataagaagaataaaaaattattaaattaaata	Protospacer
 *** * ** ************ *********

8. spacer 1.1|2208|33|NZ_CP047446|CRISPRCasFinder matches to NC_021623 (Borrelia hermsii strain HS1 plasmid lp174, complete sequence) position: , mismatch: 6, identity: 0.818

tgatataat--aataaaaaattaataaattaaagc	CRISPR spacer
--atgcaattgaagaaaaaattaatgaattaaagc	Protospacer
  **..***  ** ***********.*********

9. spacer 1.1|2208|33|NZ_CP047446|CRISPRCasFinder matches to NZ_CP014350 (Borrelia hermsii HS1 isolate Browne Mountain plasmid megaplasmid, complete sequence) position: , mismatch: 6, identity: 0.818

tgatataat--aataaaaaattaataaattaaagc	CRISPR spacer
--atgcaattgaagaaaaaattaatgaattaaagc	Protospacer
  **..***  ** ***********.*********

10. spacer 1.1|2208|33|NZ_CP047446|CRISPRCasFinder matches to KY744229 (Sulfolobus islandicus rod-shaped virus 8, partial genome) position: , mismatch: 7, identity: 0.788

tgatataataataaaaaattaataaattaaagc	CRISPR spacer
agataaaaaaataaaaaattaataaatttacat	Protospacer
 **** ** ******************* * ..

11. spacer 1.1|2208|33|NZ_CP047446|CRISPRCasFinder matches to KY744228 (Sulfolobus islandicus rod-shaped virus 9, partial genome) position: , mismatch: 7, identity: 0.788

tgatataataataaaaaattaataaattaaagc	CRISPR spacer
agataaaaaaataaaaaattaataaatttacat	Protospacer
 **** ** ******************* * ..

12. spacer 1.1|2208|33|NZ_CP047446|CRISPRCasFinder matches to NZ_CP022446 (Bacillus cereus C1L plasmid pC1L1, complete sequence) position: , mismatch: 7, identity: 0.788

tgatataataataaaaaattaataaattaaagc	CRISPR spacer
gtatataataataaaaaattgttaaattttatc	Protospacer
  ******************. ******  * *

13. spacer 1.1|2208|33|NZ_CP047446|CRISPRCasFinder matches to LT960552 (Yersinia phage fHe-Yen9-03 genome assembly, complete genome: monopartite) position: , mismatch: 8, identity: 0.758

tgatataataataaaaaattaataaattaaagc	CRISPR spacer
gaagaaaattataaaaaattaataaattcaaaa	Protospacer
 .* * *** ****************** **.

14. spacer 1.1|2208|33|NZ_CP047446|CRISPRCasFinder matches to LR596615 (Yersinia phage fHe-Yen9-04 genome assembly, chromosome: I) position: , mismatch: 8, identity: 0.758

tgatataataataaaaaattaataaattaaagc	CRISPR spacer
gaagaaaattataaaaaattaataaattcaaaa	Protospacer
 .* * *** ****************** **.

15. spacer 1.1|2208|33|NZ_CP047446|CRISPRCasFinder matches to NC_042116 (Yersinia phage fHe-Yen9-04 genome assembly, complete genome: monopartite) position: , mismatch: 8, identity: 0.758

tgatataataataaaaaattaataaattaaagc	CRISPR spacer
gaagaaaattataaaaaattaataaattcaaaa	Protospacer
 .* * *** ****************** **.

16. spacer 1.1|2208|33|NZ_CP047446|CRISPRCasFinder matches to MH617769 (Siphoviridae sp. isolate ctjc_2, complete genome) position: , mismatch: 8, identity: 0.758

tgatataataataaaaaattaataaattaaagc	CRISPR spacer
tcatcatttaataaagaattaataaattgaagg	Protospacer
* **    *******.************.***

17. spacer 1.1|2208|33|NZ_CP047446|CRISPRCasFinder matches to NZ_CP017256 (Clostridium taeniosporum strain 1/k plasmid pCt3, complete sequence) position: , mismatch: 8, identity: 0.758

tgatataataataaaaaattaataaattaaagc	CRISPR spacer
tcatataataataaaaatataataaaaagaact	Protospacer
* ***************  *******  .** .

18. spacer 1.1|2208|33|NZ_CP047446|CRISPRCasFinder matches to NC_022090 (Staphylococcus phage vB_SauM_Remus, complete genome) position: , mismatch: 8, identity: 0.758

tgatataataataaaaaattaataaattaaagc	CRISPR spacer
ttaaataataataaaaaatcaattaatttagaa	Protospacer
* * ***************.*** **** *..

19. spacer 1.1|2208|33|NZ_CP047446|CRISPRCasFinder matches to NC_020877 (Staphylococcus phage vB_SauM_Romulus, complete genome) position: , mismatch: 8, identity: 0.758

tgatataataataaaaaattaataaattaaagc	CRISPR spacer
ttaaataataataaaaaatcaattaatttagaa	Protospacer
* * ***************.*** **** *..

20. spacer 1.1|2208|33|NZ_CP047446|CRISPRCasFinder matches to NC_013940 (Deferribacter desulfuricans SSM1 megaplasmid pDF308, complete sequence) position: , mismatch: 9, identity: 0.727

tgatataataataaaaaattaataaattaaagc	CRISPR spacer
aaatataataataaaaaataattaaaaaacaat	Protospacer
 .***************** * ****  * *..

21. spacer 1.1|2208|33|NZ_CP047446|CRISPRCasFinder matches to NZ_AP019824 (Leptotrichia hofstadii strain JCM16775 plasmid pJCM16775-1, complete sequence) position: , mismatch: 9, identity: 0.727

tgatataataataaaaaattaataaattaaagc	CRISPR spacer
tgatataataataaaaagttaaaaagaggtatg	Protospacer
*****************.**** **.  . *

22. spacer 1.1|2208|33|NZ_CP047446|CRISPRCasFinder matches to NZ_CP047429 (Spiroplasma citri strain BLH-13 plasmid pSciBLH13-1, complete sequence) position: , mismatch: 9, identity: 0.727

tgatataataataaaaaattaataaattaaagc	CRISPR spacer
aggtgctatattaaaaaatttataaattaaatt	Protospacer
 *.*.. *** ********* ********** .

23. spacer 1.1|2208|33|NZ_CP047446|CRISPRCasFinder matches to NZ_CP047434 (Spiroplasma citri strain BLH-13 plasmid pSciBLH13-6) position: , mismatch: 9, identity: 0.727

tgatataataataaaaaattaataaattaaagc	CRISPR spacer
aggtgctatattaaaaaatttataaattaaatt	Protospacer
 *.*.. *** ********* ********** .

24. spacer 1.1|2208|33|NZ_CP047446|CRISPRCasFinder matches to NZ_CP047434 (Spiroplasma citri strain BLH-13 plasmid pSciBLH13-6) position: , mismatch: 9, identity: 0.727

tgatataataataaaaaattaataaattaaagc	CRISPR spacer
aggtgctatattaaaaaatttataaattaaatt	Protospacer
 *.*.. *** ********* ********** .

25. spacer 1.1|2208|33|NZ_CP047446|CRISPRCasFinder matches to NZ_CP046373 (Spiroplasma citri strain LB 319 plasmid pScpLB319-2, complete sequence) position: , mismatch: 9, identity: 0.727

tgatataataataaaaaattaataaattaaagc	CRISPR spacer
aggtgctatattaaaaaatttataaattaaatt	Protospacer
 *.*.. *** ********* ********** .

26. spacer 1.1|2208|33|NZ_CP047446|CRISPRCasFinder matches to NZ_CP047438 (Spiroplasma citri strain BLH-MB plasmid pSciBLHMB-1, complete sequence) position: , mismatch: 9, identity: 0.727

tgatataataataaaaaattaataaattaaagc	CRISPR spacer
aggtgctatattaaaaaatttataaattaaatt	Protospacer
 *.*.. *** ********* ********** .

27. spacer 1.1|2208|33|NZ_CP047446|CRISPRCasFinder matches to NZ_CP047444 (Spiroplasma citri strain BLH-MB plasmid pSciBLHMB-7) position: , mismatch: 9, identity: 0.727

tgatataataataaaaaattaataaattaaagc	CRISPR spacer
aggtgctatattaaaaaatttataaattaaatt	Protospacer
 *.*.. *** ********* ********** .

28. spacer 1.1|2208|33|NZ_CP047446|CRISPRCasFinder matches to NZ_CP032206 (Klebsiella pneumoniae strain AR_0109 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.727

tgatataataataaaaaattaataaattaaagc	CRISPR spacer
caggattttaataaataataaataaattaaagt	Protospacer
... **  ******* *** ************.

29. spacer 1.1|2208|33|NZ_CP047446|CRISPRCasFinder matches to NZ_CP043436 (Campylobacter fetus subsp. venerealis NCTC 10354 plasmid p3226, complete sequence) position: , mismatch: 10, identity: 0.697

tgatataataataaaaaattaataaattaaagc	CRISPR spacer
aataataataataaaatattaataaaatagtta	Protospacer
 .  ************ ********* **.

30. spacer 1.1|2208|33|NZ_CP047446|CRISPRCasFinder matches to NZ_CP008809 (Campylobacter fetus subsp. fetus 04/554 plasmid pCFF04554, complete sequence) position: , mismatch: 10, identity: 0.697

tgatataataataaaaaattaataaattaaagc	CRISPR spacer
aataataataataaaatattaataaaatagtta	Protospacer
 .  ************ ********* **.

31. spacer 1.1|2208|33|NZ_CP047446|CRISPRCasFinder matches to NZ_CP008812 (Campylobacter fetus subsp. venerealis 97/608 plasmid pCFV97608-2, complete sequence) position: , mismatch: 10, identity: 0.697

tgatataataataaaaaattaataaattaaagc	CRISPR spacer
aataataataataaaatattaataaaatagtta	Protospacer
 .  ************ ********* **.

32. spacer 1.1|2208|33|NZ_CP047446|CRISPRCasFinder matches to NZ_CP018792 (Campylobacter sp. RM8964 plasmid pVIC8964, complete sequence) position: , mismatch: 10, identity: 0.697

tgatataataataaaaaattaataaattaaagc	CRISPR spacer
aataataataataaaatattaataaaatattta	Protospacer
 .  ************ ********* **

33. spacer 1.1|2208|33|NZ_CP047446|CRISPRCasFinder matches to NZ_CP018794 (Campylobacter sp. RM12175 plasmid pVIC12175-1, complete sequence) position: , mismatch: 10, identity: 0.697

tgatataataataaaaaattaataaattaaagc	CRISPR spacer
aataataataataaaatattaataaaatagtta	Protospacer
 .  ************ ********* **.

34. spacer 1.1|2208|33|NZ_CP047446|CRISPRCasFinder matches to NZ_LR214973 (Mycoplasma bovirhinis strain NCTC10118 plasmid 2) position: , mismatch: 10, identity: 0.697

tgatataataataaaaaattaataaattaaagc	CRISPR spacer
atttataataataaggaattaataaatatagtt	Protospacer
   ***********..***********  *. .

35. spacer 1.1|2208|33|NZ_CP047446|CRISPRCasFinder matches to MK911750 (Streptococcus phage P738, complete genome) position: , mismatch: 10, identity: 0.697

tgatataataataaaaaattaataaattaaagc	CRISPR spacer
agccgccgtaataaagaataaataaattaaaga	Protospacer
 * ... .*******.*** ************

36. spacer 1.1|2208|33|NZ_CP047446|CRISPRCasFinder matches to NC_029119 (Staphylococcus phage SPbeta-like, complete genome) position: , mismatch: 10, identity: 0.697

tgatataataataaaaaattaataaattaaagc	CRISPR spacer
atatataataataacaatttaataaaattcgtg	Protospacer
  ************ ** ******** *  .

37. spacer 1.1|2208|33|NZ_CP047446|CRISPRCasFinder matches to NC_021796 (Cellulophaga phage phi38:1, complete genome) position: , mismatch: 11, identity: 0.667

tgatataataataaaaaattaataaattaaagc	CRISPR spacer
aaataaaataatcaaaaattaataaagatggat	Protospacer
 .*** ****** *************   ....

38. spacer 1.1|2208|33|NZ_CP047446|CRISPRCasFinder matches to KC821612 (Cellulophaga phage phi40:1, complete genome) position: , mismatch: 11, identity: 0.667

tgatataataataaaaaattaataaattaaagc	CRISPR spacer
aaataaaataatcaaaaattaataaagatggat	Protospacer
 .*** ****** *************   ....

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site	Prophage annotation

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

5. NZ_CP047444

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

26051 : 53998

Streptococcus_phage(20.0%)

capsid,transposase,tail,portal,head,terminase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_071937420.1\|26051_26342_-\|transposase	IS30 family transposase	NA	NA	NA	NA
WP_157092858.1\|26399_26558_-	hypothetical protein	NA	NA	NA	NA
WP_071937419.1\|26657_26849_+	hypothetical protein	NA	NA	NA	NA
WP_071937418.1\|27019_27595_+	hypothetical protein	NA	NA	NA	NA
WP_071937416.1\|27584_27821_+	hypothetical protein	NA	NA	NA	NA
WP_071937414.1\|27881_28178_+	hypothetical protein	NA	NA	NA	NA
WP_071937413.1\|28131_28527_+	hypothetical protein	NA	NA	NA	NA
WP_071937411.1\|28751_28931_+	hypothetical protein	NA	NA	NA	NA
WP_157092857.1\|28920_29097_+	hypothetical protein	NA	NA	NA	NA
WP_155522113.1\|30099_30243_-	hypothetical protein	NA	NA	NA	NA
WP_071937407.1\|30257_30455_-	hypothetical protein	NA	NA	NA	NA
WP_157092856.1\|30603_30780_-	hypothetical protein	NA	NA	NA	NA
WP_157092855.1\|30899_31067_-	hypothetical protein	NA	NA	NA	NA
WP_164028260.1\|32738_34073_-	hypothetical protein	NA	NA	NA	NA
WP_164028175.1\|34263_34665_-	hypothetical protein	NA	NA	NA	NA
WP_071937171.1\|34791_35313_+	lipoprotein	NA	NA	NA	NA
WP_071937172.1\|35349_35562_-	hypothetical protein	NA	NA	NA	NA
WP_071937173.1\|35542_35824_-	hypothetical protein	NA	NA	NA	NA
WP_071937174.1\|35839_37468_-	hypothetical protein	NA	NA	NA	NA
WP_071937175.1\|37482_38085_-	hypothetical protein	NA	NA	NA	NA
WP_071937176.1\|39030_39288_-	hypothetical protein	NA	NA	NA	NA
WP_157092847.1\|39526_39862_-	DUF4065 domain-containing protein	NA	NA	NA	NA
WP_071937179.1\|40296_40671_-	hypothetical protein	NA	NA	NA	NA
WP_071937180.1\|40687_41203_-	DUF4065 domain-containing protein	A7J2B6	Streptococcus_phage	4.3e-05	25.2
WP_071937565.1\|41627_43079_-	hypothetical protein	NA	NA	NA	NA
WP_071937183.1\|43096_44023_-	hypothetical protein	NA	NA	NA	NA
WP_071937184.1\|44032_45580_-\|tail	phage tail tape measure protein	NA	NA	NA	NA
WP_071937185.1\|45767_46100_-	hypothetical protein	NA	NA	NA	NA
WP_071937186.1\|46092_46680_-	hypothetical protein	A6M958	Geobacillus_virus	4.5e-19	38.5
WP_071937187.1\|46695_47073_-	hypothetical protein	NA	NA	NA	NA
WP_071937188.1\|47078_47477_-	hypothetical protein	NA	NA	NA	NA
WP_071937189.1\|47487_47814_-	hypothetical protein	NA	NA	NA	NA
WP_071937190.1\|47803_48172_-\|head,tail	phage gp6-like head-tail connector protein	NA	NA	NA	NA
WP_164028246.1\|48195_49983_-\|capsid	phage major capsid protein	A0A1W6JQG3	Corynebacterium_phage	3.8e-08	29.1
WP_071937192.1\|49957_51160_-\|portal	phage portal protein	J9QE83	Clostridium_phage	1.0e-25	25.7
WP_164028629.1\|51331_51547_+	hypothetical protein	NA	NA	NA	NA
WP_164028631.1\|51591_51822_+	hypothetical protein	NA	NA	NA	NA
WP_071937194.1\|51802_52195_+	hypothetical protein	NA	NA	NA	NA
WP_164028275.1\|52294_53998_-\|terminase	terminase large subunit	A0A290GJW3	Caldibacillus_phage	1.5e-78	34.3

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage