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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP047432 Spiroplasma citri strain BLH-13 plasmid pSciBLH13-4, complete sequence 1 crisprs NA 1 1 0 0
NZ_CP047434 Spiroplasma citri strain BLH-13 plasmid pSciBLH13-6 0 crisprs NA 0 0 3 0
NZ_CP047435 Spiroplasma citri strain BLH-13 plasmid pSciBLH13-7 0 crisprs NA 0 0 0 0
NZ_CP047430 Spiroplasma citri strain BLH-13 plasmid pSciBLH13-2, complete sequence 0 crisprs NA 0 0 0 0
NZ_CP047436 Spiroplasma citri strain BLH-13 plasmid pSciBLH13-8 1 crisprs NA 0 1 0 0
NZ_CP047429 Spiroplasma citri strain BLH-13 plasmid pSciBLH13-1, complete sequence 0 crisprs NA 0 0 1 0
NZ_CP047428 Spiroplasma citri strain BLH-13 chromosome, complete genome 0 crisprs cas4 0 0 20 0
NZ_CP047431 Spiroplasma citri strain BLH-13 plasmid pSciBLH13-3, complete sequence 0 crisprs NA 0 0 0 0
NZ_CP047433 Spiroplasma citri strain BLH-13 plasmid pSciBLH13-5, complete sequence 0 crisprs NA 0 0 0 0

Results visualization

1. NZ_CP047432
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP047432_1 34421-34526 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
NZ_CP047432_1 1.1|34447|54|NZ_CP047432|CRISPRCasFinder 34447-34500 54 NZ_CP047432.1 37745-37798 0 1.0

1. spacer 1.1|34447|54|NZ_CP047432|CRISPRCasFinder matches to position: 37745-37798, mismatch: 0, identity: 1.0

catatttatatttttttaaaaaaccacttgaaaatatgggttttttatattatc	CRISPR spacer
catatttatatttttttaaaaaaccacttgaaaatatgggttttttatattatc	Protospacer
******************************************************

CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_CP047432_1 1.1|34447|54|NZ_CP047432|CRISPRCasFinder 34447-34500 54 NC_007391 Spiroplasma citri pSci5 plasmid 2943-2996 0 1.0
NZ_CP047432_1 1.1|34447|54|NZ_CP047432|CRISPRCasFinder 34447-34500 54 NC_007391 Spiroplasma citri pSci5 plasmid 27458-27511 0 1.0
NZ_CP047432_1 1.1|34447|54|NZ_CP047432|CRISPRCasFinder 34447-34500 54 NZ_CP047432 Spiroplasma citri strain BLH-13 plasmid pSciBLH13-4, complete sequence 37745-37798 0 1.0
NZ_CP047432_1 1.1|34447|54|NZ_CP047432|CRISPRCasFinder 34447-34500 54 NZ_CP047432 Spiroplasma citri strain BLH-13 plasmid pSciBLH13-4, complete sequence 34447-34500 0 1.0
NZ_CP047432_1 1.1|34447|54|NZ_CP047432|CRISPRCasFinder 34447-34500 54 NZ_CP046370 Spiroplasma citri strain BR12 plasmid pScpBR12-2, complete sequence 40109-40162 0 1.0
NZ_CP047432_1 1.1|34447|54|NZ_CP047432|CRISPRCasFinder 34447-34500 54 NZ_CP046370 Spiroplasma citri strain BR12 plasmid pScpBR12-2, complete sequence 36855-36908 0 1.0
NZ_CP047432_1 1.1|34447|54|NZ_CP047432|CRISPRCasFinder 34447-34500 54 NZ_CP047441 Spiroplasma citri strain BLH-MB plasmid pSciBLHMB-4, complete sequence 38288-38341 0 1.0
NZ_CP047432_1 1.1|34447|54|NZ_CP047432|CRISPRCasFinder 34447-34500 54 NZ_CP047441 Spiroplasma citri strain BLH-MB plasmid pSciBLHMB-4, complete sequence 35034-35087 0 1.0
NZ_CP047432_1 1.1|34447|54|NZ_CP047432|CRISPRCasFinder 34447-34500 54 NZ_CP053311 Spiroplasma citri strain C5 plasmid pScpC5-7, complete sequence 274-327 1 0.981
NZ_CP047432_1 1.1|34447|54|NZ_CP047432|CRISPRCasFinder 34447-34500 54 NZ_CP042473 Spiroplasma citri strain CC-2 plasmid pScpCC2-1, complete sequence 28255-28308 1 0.981

1. spacer 1.1|34447|54|NZ_CP047432|CRISPRCasFinder matches to NC_007391 (Spiroplasma citri pSci5 plasmid) position: , mismatch: 0, identity: 1.0

catatttatatttttttaaaaaaccacttgaaaatatgggttttttatattatc	CRISPR spacer
catatttatatttttttaaaaaaccacttgaaaatatgggttttttatattatc	Protospacer
******************************************************

2. spacer 1.1|34447|54|NZ_CP047432|CRISPRCasFinder matches to NC_007391 (Spiroplasma citri pSci5 plasmid) position: , mismatch: 0, identity: 1.0

catatttatatttttttaaaaaaccacttgaaaatatgggttttttatattatc	CRISPR spacer
catatttatatttttttaaaaaaccacttgaaaatatgggttttttatattatc	Protospacer
******************************************************

3. spacer 1.1|34447|54|NZ_CP047432|CRISPRCasFinder matches to NZ_CP047432 (Spiroplasma citri strain BLH-13 plasmid pSciBLH13-4, complete sequence) position: , mismatch: 0, identity: 1.0

catatttatatttttttaaaaaaccacttgaaaatatgggttttttatattatc	CRISPR spacer
catatttatatttttttaaaaaaccacttgaaaatatgggttttttatattatc	Protospacer
******************************************************

4. spacer 1.1|34447|54|NZ_CP047432|CRISPRCasFinder matches to NZ_CP047432 (Spiroplasma citri strain BLH-13 plasmid pSciBLH13-4, complete sequence) position: , mismatch: 0, identity: 1.0

catatttatatttttttaaaaaaccacttgaaaatatgggttttttatattatc	CRISPR spacer
catatttatatttttttaaaaaaccacttgaaaatatgggttttttatattatc	Protospacer
******************************************************

5. spacer 1.1|34447|54|NZ_CP047432|CRISPRCasFinder matches to NZ_CP046370 (Spiroplasma citri strain BR12 plasmid pScpBR12-2, complete sequence) position: , mismatch: 0, identity: 1.0

catatttatatttttttaaaaaaccacttgaaaatatgggttttttatattatc	CRISPR spacer
catatttatatttttttaaaaaaccacttgaaaatatgggttttttatattatc	Protospacer
******************************************************

6. spacer 1.1|34447|54|NZ_CP047432|CRISPRCasFinder matches to NZ_CP046370 (Spiroplasma citri strain BR12 plasmid pScpBR12-2, complete sequence) position: , mismatch: 0, identity: 1.0

catatttatatttttttaaaaaaccacttgaaaatatgggttttttatattatc	CRISPR spacer
catatttatatttttttaaaaaaccacttgaaaatatgggttttttatattatc	Protospacer
******************************************************

7. spacer 1.1|34447|54|NZ_CP047432|CRISPRCasFinder matches to NZ_CP047441 (Spiroplasma citri strain BLH-MB plasmid pSciBLHMB-4, complete sequence) position: , mismatch: 0, identity: 1.0

catatttatatttttttaaaaaaccacttgaaaatatgggttttttatattatc	CRISPR spacer
catatttatatttttttaaaaaaccacttgaaaatatgggttttttatattatc	Protospacer
******************************************************

8. spacer 1.1|34447|54|NZ_CP047432|CRISPRCasFinder matches to NZ_CP047441 (Spiroplasma citri strain BLH-MB plasmid pSciBLHMB-4, complete sequence) position: , mismatch: 0, identity: 1.0

catatttatatttttttaaaaaaccacttgaaaatatgggttttttatattatc	CRISPR spacer
catatttatatttttttaaaaaaccacttgaaaatatgggttttttatattatc	Protospacer
******************************************************

9. spacer 1.1|34447|54|NZ_CP047432|CRISPRCasFinder matches to NZ_CP053311 (Spiroplasma citri strain C5 plasmid pScpC5-7, complete sequence) position: , mismatch: 1, identity: 0.981

catatttatatttttttaaaaaaccacttgaaaatatgggttttttatattatc-	CRISPR spacer
catatttatatttttttaaaaaaccacttgaaaatatggg-tttttatattatca	Protospacer
**************************************** ************* 

10. spacer 1.1|34447|54|NZ_CP047432|CRISPRCasFinder matches to NZ_CP042473 (Spiroplasma citri strain CC-2 plasmid pScpCC2-1, complete sequence) position: , mismatch: 1, identity: 0.981

catatttatatttttttaaaaaaccacttgaaaatatgggttttttatattatc-	CRISPR spacer
catatttatatttttttaaaaaaccacttgaaaatatggg-tttttatattatca	Protospacer
**************************************** ************* 

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
2. NZ_CP047429
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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 5395 : 44835 45 Clostridium_phage(18.18%) head,portal,capsid,tail,terminase,bacteriocin NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
3. NZ_CP047428
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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 105017 : 111130 11 Spiroplasma_virus(88.89%) transposase NA
DBSCAN-SWA_2 474861 : 483008 10 Staphylococcus_phage(28.57%) transposase NA
DBSCAN-SWA_3 574923 : 629089 60 Staphylococcus_phage(14.29%) terminase,head,tail,portal,capsid NA
DBSCAN-SWA_4 774261 : 784439 13 Spiroplasma_virus(90.0%) NA NA
DBSCAN-SWA_5 794009 : 801750 14 Spiroplasma_virus(81.82%) NA NA
DBSCAN-SWA_6 811399 : 823901 19 Spiroplasma_virus(66.67%) transposase,integrase attL 804245:804260|attR 821124:821139
DBSCAN-SWA_7 862880 : 899522 48 Clostridium_phage(18.18%) terminase,head,tail,protease,portal,tRNA,capsid NA
DBSCAN-SWA_8 927027 : 934793 10 Staphylococcus_phage(33.33%) NA NA
DBSCAN-SWA_9 952255 : 963092 15 Spiroplasma_virus(92.31%) transposase NA
DBSCAN-SWA_10 1047295 : 1056832 14 Spiroplasma_virus(90.0%) NA NA
DBSCAN-SWA_11 1061243 : 1087704 38 Spiroplasma_phage(100.0%) NA NA
DBSCAN-SWA_12 1113715 : 1126435 17 Spiroplasma_phage(100.0%) NA NA
DBSCAN-SWA_13 1135227 : 1141242 8 Spiroplasma_phage(100.0%) NA NA
DBSCAN-SWA_14 1144493 : 1151854 12 Spiroplasma_phage(100.0%) NA NA
DBSCAN-SWA_15 1204330 : 1210829 9 Spiroplasma_virus(85.71%) NA NA
DBSCAN-SWA_16 1282072 : 1285892 9 Spiroplasma_virus(100.0%) NA NA
DBSCAN-SWA_17 1306297 : 1359614 50 Spiroplasma_virus(47.06%) capsid,transposase,terminase,tail,portal,tRNA,head NA
DBSCAN-SWA_18 1424852 : 1431099 7 Spiroplasma_virus(100.0%) NA NA
DBSCAN-SWA_19 1462266 : 1470123 13 Spiroplasma_virus(90.91%) transposase NA
DBSCAN-SWA_20 1529693 : 1540327 17 Spiroplasma_virus(91.67%) transposase NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
4. NZ_CP047436
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP047436_1 1703-1817 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_CP047436_1 1.1|1737|47|NZ_CP047436|CRISPRCasFinder 1737-1783 47 NC_007386 Spiroplasma citri plasmid pSciA strain GII3 3570-3616 0 1.0
NZ_CP047436_1 1.1|1737|47|NZ_CP047436|CRISPRCasFinder 1737-1783 47 NZ_CP047436 Spiroplasma citri strain BLH-13 plasmid pSciBLH13-8 1737-1783 0 1.0
NZ_CP047436_1 1.1|1737|47|NZ_CP047436|CRISPRCasFinder 1737-1783 47 NZ_CP053305 Spiroplasma citri strain C5 plasmid pScpC5-1, complete sequence 2691-2737 0 1.0
NZ_CP047436_1 1.1|1737|47|NZ_CP047436|CRISPRCasFinder 1737-1783 47 NZ_CP047443 Spiroplasma citri strain BLH-MB plasmid pSciBLHMB-6, complete sequence 4542-4588 2 0.957
NZ_CP047436_1 1.1|1737|47|NZ_CP047436|CRISPRCasFinder 1737-1783 47 NZ_CP047442 Spiroplasma citri strain BLH-MB plasmid pSciBLHMB-5, complete sequence 4528-4574 2 0.957

1. spacer 1.1|1737|47|NZ_CP047436|CRISPRCasFinder matches to NC_007386 (Spiroplasma citri plasmid pSciA strain GII3) position: , mismatch: 0, identity: 1.0

aagaaaataaattttttataattaatattttgctttgttcttgtttg	CRISPR spacer
aagaaaataaattttttataattaatattttgctttgttcttgtttg	Protospacer
***********************************************

2. spacer 1.1|1737|47|NZ_CP047436|CRISPRCasFinder matches to NZ_CP047436 (Spiroplasma citri strain BLH-13 plasmid pSciBLH13-8) position: , mismatch: 0, identity: 1.0

aagaaaataaattttttataattaatattttgctttgttcttgtttg	CRISPR spacer
aagaaaataaattttttataattaatattttgctttgttcttgtttg	Protospacer
***********************************************

3. spacer 1.1|1737|47|NZ_CP047436|CRISPRCasFinder matches to NZ_CP053305 (Spiroplasma citri strain C5 plasmid pScpC5-1, complete sequence) position: , mismatch: 0, identity: 1.0

aagaaaataaattttttataattaatattttgctttgttcttgtttg	CRISPR spacer
aagaaaataaattttttataattaatattttgctttgttcttgtttg	Protospacer
***********************************************

4. spacer 1.1|1737|47|NZ_CP047436|CRISPRCasFinder matches to NZ_CP047443 (Spiroplasma citri strain BLH-MB plasmid pSciBLHMB-6, complete sequence) position: , mismatch: 2, identity: 0.957

-aagaaaataaattttttataattaatattttgctttgttcttgtttg	CRISPR spacer
taagaaaat-aattttttataattaatattttgctttgttcttgttgg	Protospacer
 ******** ************************************ *

5. spacer 1.1|1737|47|NZ_CP047436|CRISPRCasFinder matches to NZ_CP047442 (Spiroplasma citri strain BLH-MB plasmid pSciBLHMB-5, complete sequence) position: , mismatch: 2, identity: 0.957

aagaaaataaattttttataattaatattttgc-tttgttcttgtttg	CRISPR spacer
aagaaaataaattttttataattaatattttgcttttgttcttgttg-	Protospacer
********************************* ************  

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
5. NZ_CP047434
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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 63946 : 67542 8 Spiroplasma_virus(100.0%) NA NA
DBSCAN-SWA_2 79256 : 86386 13 Spiroplasma_virus(100.0%) NA NA
DBSCAN-SWA_3 91225 : 125051 45 Spiroplasma_virus(73.33%) protease,portal,transposase,capsid,tail,head NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage