CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_AP019695	Absiella argi strain N6H1-5	1 crisprs	RT,DinG,WYL,DEDDh,cas3,csa3,PD-DExK,cas2,cas1,cas9,PrimPol	1	10	12	0
NZ_AP019696	Absiella argi strain N6H1-5 plasmid pABar1, complete sequence	0 crisprs	NA	0	0	0	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_AP019695_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_AP019695_1

1987092-1988315

TypeII

Consensus_repeat	Method
GTTTCATTCTAGCAAAAATCCATATGGTAACAAAAC	PILER-CR
GTTTCATTCTAGCAAAAATCCATATGGTAACAAAAC	CRISPRCasFinder
GTTTCATTCTAGCAAAAATCCATATGGTAACAAAAC	CRT
GTTTCATTCTAGCAAAAATCCATATGGTAACAAAAC	PILER-CR

18 spacers

cas2,cas1,cas9

The CRISPR arrays of NZ_AP019695_1

>merge|NZ_AP019695|1|1987092-1988315|PILER-CR,CRISPRCasFinder,CRT,PILER-CR
GTTTCATTCTAGCAAAAATCCATATGGTAACAAAACCCATTCAAACTGTCCCTGTTTCCTGTAATCGTTTCATTCTAGCAAAAATCCATATGGTAACAAAACTATGATAAAGGGGAATATGTAAAGGTAACAGTTTCATTCTAGCAAAAATCCATATGGTAACAAAACCGTTACGATGAACGTAGACGCAGGAGCCTAGTTTCATTCTAGCAAAAATCCATATGGTAACAAAACAGGAAATCCGCTCTCTTTAAACATTCGTTCGTTTCATTCTAGCAAAAATCCATATGGTAACAAAACTCGAGTATGTGCTGAAATTCTTCGTTGGTAGTTTCATTCTAGCAAAAATCCATATGGTAACAAAACTCGAATCAACGACTTAATCAACTTGATTGAGTTTCATTCTAGCAAAAATCCATATGGTAACAAAACTGGAACATTACTATTTGAAACAAAGCTAGAGTTTCATTCTAGCAAAAATCCATATGGTAACAAAACTCTGCCATTTTTGAGGGTCTATACGACCCAGTTTCATTCTAGCAAAAATCCATATGGTAACAAAACTGCTTCAACTCGCTTATTTGCGTTTGAACTGTTTCATTCTAGCAAAAATCCATATGGTAACAAAACTGCAAAGACACTCTCTATATCTACTTAAGTGTTTCATTCTAGCAAAAATCCATATGGTAACAAAACTCTCTTAAAATGTTTATTTTCTTTTCTGCAGTTTCATTCTAGCAAAAATCCATATGGTAACAAAACCGAATGTAATCCGTCTTTGAAGACTTCGTGGTTTCATTCTAGCAAAAATCCATATGGTAACAAAACTGTCGTATGGAAAAGCAGTTAATTCTATTTGTTTCATTCTAGCAAAAATCCATATGGTAACAAAACCAAATCCTGTTCGGTTGGTTGAGGTTTAACGTTTCATTCTAGCAAAAATCCATATGGTAACAAAACAAATCATTAGGTTTATTTTTCCAACAACGTGTTTCATTCTAGCAAAAATCCATATGGTAACAAAACTCTTACTTCTCCATCATTCACTGGAAAACAGTTTCATTCTAGCAAAAATCCATATGGTAACAAAACTGATGTAAGCTTTTCAGCATTACCCTGTGAGTTTCATTCTAGCAAAAATCCATATGGTAACAAAACGATGAACGGTACATAGTCAAGGTGCAGATGGTTTCATTCTAGCAAAAATCCATATGGTAACAAAAC

>NZ_AP019695|1|1|1987092-1988315|PILER-CR
GTTTCATTCTAGCAAAAATCCATATGGTAACAAAAC	CCATTCAAACTGTCCCTGTTTCCTGTAATC
GTTTCATTCTAGCAAAAATCCATATGGTAACAAAAC	TATGATAAAGGGGAATATGTAAAGGTAACA
GTTTCATTCTAGCAAAAATCCATATGGTAACAAAAC	CGTTACGATGAACGTAGACGCAGGAGCCTA
GTTTCATTCTAGCAAAAATCCATATGGTAACAAAAC	AGGAAATCCGCTCTCTTTAAACATTCGTTC
GTTTCATTCTAGCAAAAATCCATATGGTAACAAAAC	TCGAGTATGTGCTGAAATTCTTCGTTGGTA
GTTTCATTCTAGCAAAAATCCATATGGTAACAAAAC	TCGAATCAACGACTTAATCAACTTGATTGA
GTTTCATTCTAGCAAAAATCCATATGGTAACAAAAC	TGGAACATTACTATTTGAAACAAAGCTAGA
GTTTCATTCTAGCAAAAATCCATATGGTAACAAAAC	TCTGCCATTTTTGAGGGTCTATACGACCCA
GTTTCATTCTAGCAAAAATCCATATGGTAACAAAAC	TGCTTCAACTCGCTTATTTGCGTTTGAACT
GTTTCATTCTAGCAAAAATCCATATGGTAACAAAAC	TGCAAAGACACTCTCTATATCTACTTAAGT
GTTTCATTCTAGCAAAAATCCATATGGTAACAAAAC	TCTCTTAAAATGTTTATTTTCTTTTCTGCA
GTTTCATTCTAGCAAAAATCCATATGGTAACAAAAC	CGAATGTAATCCGTCTTTGAAGACTTCGTG
GTTTCATTCTAGCAAAAATCCATATGGTAACAAAAC	TGTCGTATGGAAAAGCAGTTAATTCTATTT
GTTTCATTCTAGCAAAAATCCATATGGTAACAAAAC	CAAATCCTGTTCGGTTGGTTGAGGTTTAACGTTTCATTCTAGCAAAAATCCATATGGTAACAAAACAAATCATTAGGTTTATTTTTCCAACAACGTGTTTCATTCTAGCAAAAATCCATATGGTAACAAAACTCTTACTTCTCCATCATTCACTGGAAAACAGTTTCATTCTAGCAAAAATCCATATGGTAACAAAACTGATGTAAGCTTTTCAGCATTACCCTGTGAGTTTCATTCTAGCAAAAATCCATATGGTAACAAAACGATGAACGGTACATAGTCAAGGTGCAGATG
	AAATCATTAGGTTTATTTTTCCAACAACGT
GTTTCATTCTAGCAAAAATCCATATGGTAACAAAAC	TCTTACTTCTCCATCATTCACTGGAAAACA
GTTTCATTCTAGCAAAAATCCATATGGTAACAAAAC	TGATGTAAGCTTTTCAGCATTACCCTGTGA
GTTTCATTCTAGCAAAAATCCATATGGTAACAAAAC	GATGAACGGTACATAGTCAAGGTGCAGATG
GTTTCATTCTAGCAAAAATCCATATGGTAACAAAAC

>NZ_AP019695|1|1|1987092-1988315|CRISPRCasFinder
GTTTCATTCTAGCAAAAATCCATATGGTAACAAAAC	CCATTCAAACTGTCCCTGTTTCCTGTAATC
GTTTCATTCTAGCAAAAATCCATATGGTAACAAAAC	TATGATAAAGGGGAATATGTAAAGGTAACA
GTTTCATTCTAGCAAAAATCCATATGGTAACAAAAC	CGTTACGATGAACGTAGACGCAGGAGCCTA
GTTTCATTCTAGCAAAAATCCATATGGTAACAAAAC	AGGAAATCCGCTCTCTTTAAACATTCGTTC
GTTTCATTCTAGCAAAAATCCATATGGTAACAAAAC	TCGAGTATGTGCTGAAATTCTTCGTTGGTA
GTTTCATTCTAGCAAAAATCCATATGGTAACAAAAC	TCGAATCAACGACTTAATCAACTTGATTGA
GTTTCATTCTAGCAAAAATCCATATGGTAACAAAAC	TGGAACATTACTATTTGAAACAAAGCTAGA
GTTTCATTCTAGCAAAAATCCATATGGTAACAAAAC	TCTGCCATTTTTGAGGGTCTATACGACCCA
GTTTCATTCTAGCAAAAATCCATATGGTAACAAAAC	TGCTTCAACTCGCTTATTTGCGTTTGAACT
GTTTCATTCTAGCAAAAATCCATATGGTAACAAAAC	TGCAAAGACACTCTCTATATCTACTTAAGT
GTTTCATTCTAGCAAAAATCCATATGGTAACAAAAC	TCTCTTAAAATGTTTATTTTCTTTTCTGCA
GTTTCATTCTAGCAAAAATCCATATGGTAACAAAAC	CGAATGTAATCCGTCTTTGAAGACTTCGTG
GTTTCATTCTAGCAAAAATCCATATGGTAACAAAAC	TGTCGTATGGAAAAGCAGTTAATTCTATTT
GTTTCATTCTAGCAAAAATCCATATGGTAACAAAAC	CAAATCCTGTTCGGTTGGTTGAGGTTTAAC
GTTTCATTCTAGCAAAAATCCATATGGTAACAAAAC	AAATCATTAGGTTTATTTTTCCAACAACGT
GTTTCATTCTAGCAAAAATCCATATGGTAACAAAAC	TCTTACTTCTCCATCATTCACTGGAAAACA
GTTTCATTCTAGCAAAAATCCATATGGTAACAAAAC	TGATGTAAGCTTTTCAGCATTACCCTGTGA
GTTTCATTCTAGCAAAAATCCATATGGTAACAAAAC	GATGAACGGTACATAGTCAAGGTGCAGATG
GTTTCATTCTAGCAAAAATCCATATGGTAACAAAAC

>NZ_AP019695|1|1|1987092-1988315|CRT
GTTTCATTCTAGCAAAAATCCATATGGTAACAAAAC	CCATTCAAACTGTCCCTGTTTCCTGTAATC
GTTTCATTCTAGCAAAAATCCATATGGTAACAAAAC	TATGATAAAGGGGAATATGTAAAGGTAACA
GTTTCATTCTAGCAAAAATCCATATGGTAACAAAAC	CGTTACGATGAACGTAGACGCAGGAGCCTA
GTTTCATTCTAGCAAAAATCCATATGGTAACAAAAC	AGGAAATCCGCTCTCTTTAAACATTCGTTC
GTTTCATTCTAGCAAAAATCCATATGGTAACAAAAC	TCGAGTATGTGCTGAAATTCTTCGTTGGTA
GTTTCATTCTAGCAAAAATCCATATGGTAACAAAAC	TCGAATCAACGACTTAATCAACTTGATTGA
GTTTCATTCTAGCAAAAATCCATATGGTAACAAAAC	TGGAACATTACTATTTGAAACAAAGCTAGA
GTTTCATTCTAGCAAAAATCCATATGGTAACAAAAC	TCTGCCATTTTTGAGGGTCTATACGACCCA
GTTTCATTCTAGCAAAAATCCATATGGTAACAAAAC	TGCTTCAACTCGCTTATTTGCGTTTGAACT
GTTTCATTCTAGCAAAAATCCATATGGTAACAAAAC	TGCAAAGACACTCTCTATATCTACTTAAGT
GTTTCATTCTAGCAAAAATCCATATGGTAACAAAAC	TCTCTTAAAATGTTTATTTTCTTTTCTGCA
GTTTCATTCTAGCAAAAATCCATATGGTAACAAAAC	CGAATGTAATCCGTCTTTGAAGACTTCGTG
GTTTCATTCTAGCAAAAATCCATATGGTAACAAAAC	TGTCGTATGGAAAAGCAGTTAATTCTATTT
GTTTCATTCTAGCAAAAATCCATATGGTAACAAAAC	CAAATCCTGTTCGGTTGGTTGAGGTTTAAC
GTTTCATTCTAGCAAAAATCCATATGGTAACAAAAC	AAATCATTAGGTTTATTTTTCCAACAACGT
GTTTCATTCTAGCAAAAATCCATATGGTAACAAAAC	TCTTACTTCTCCATCATTCACTGGAAAACA
GTTTCATTCTAGCAAAAATCCATATGGTAACAAAAC	TGATGTAAGCTTTTCAGCATTACCCTGTGA
GTTTCATTCTAGCAAAAATCCATATGGTAACAAAAC	GATGAACGGTACATAGTCAAGGTGCAGATG
GTTTCATTCTAGCAAAAATCCATATGGTAACAAAAC

>NZ_AP019695|1|2|1988016-1988315|PILER-CR
	CCATTCAAACTGTCCCTGTTTCCTGTAATC
GTTTCATTCTAGCAAAAATCCATATGGTAACAAAAC	TATGATAAAGGGGAATATGTAAAGGTAACA
GTTTCATTCTAGCAAAAATCCATATGGTAACAAAAC	CGTTACGATGAACGTAGACGCAGGAGCCTA
GTTTCATTCTAGCAAAAATCCATATGGTAACAAAAC	AGGAAATCCGCTCTCTTTAAACATTCGTTC
GTTTCATTCTAGCAAAAATCCATATGGTAACAAAAC	TCGAGTATGTGCTGAAATTCTTCGTTGGTA
GTTTCATTCTAGCAAAAATCCATATGGTAACAAAAC	TCGAATCAACGACTTAATCAACTTGATTGA
GTTTCATTCTAGCAAAAATCCATATGGTAACAAAAC	TGGAACATTACTATTTGAAACAAAGCTAGA
GTTTCATTCTAGCAAAAATCCATATGGTAACAAAAC	TCTGCCATTTTTGAGGGTCTATACGACCCA
GTTTCATTCTAGCAAAAATCCATATGGTAACAAAAC	TGCTTCAACTCGCTTATTTGCGTTTGAACT
GTTTCATTCTAGCAAAAATCCATATGGTAACAAAAC	TGCAAAGACACTCTCTATATCTACTTAAGT
GTTTCATTCTAGCAAAAATCCATATGGTAACAAAAC	TCTCTTAAAATGTTTATTTTCTTTTCTGCA
GTTTCATTCTAGCAAAAATCCATATGGTAACAAAAC	CGAATGTAATCCGTCTTTGAAGACTTCGTG
GTTTCATTCTAGCAAAAATCCATATGGTAACAAAAC	TGTCGTATGGAAAAGCAGTTAATTCTATTT
GTTTCATTCTAGCAAAAATCCATATGGTAACAAAAC	CAAATCCTGTTCGGTTGGTTGAGGTTTAACGTTTCATTCTAGCAAAAATCCATATGGTAACAAAACAAATCATTAGGTTTATTTTTCCAACAACGTGTTTCATTCTAGCAAAAATCCATATGGTAACAAAACTCTTACTTCTCCATCATTCACTGGAAAACAGTTTCATTCTAGCAAAAATCCATATGGTAACAAAACTGATGTAAGCTTTTCAGCATTACCCTGTGAGTTTCATTCTAGCAAAAATCCATATGGTAACAAAACGATGAACGGTACATAGTCAAGGTGCAGATG
	AAATCATTAGGTTTATTTTTCCAACAACGT
GTTTCATTCTAGCAAAAATCCATATGGTAACAAAAC	TCTTACTTCTCCATCATTCACTGGAAAACA
GTTTCATTCTAGCAAAAATCCATATGGTAACAAAAC	TGATGTAAGCTTTTCAGCATTACCCTGTGA
GTTTCATTCTAGCAAAAATCCATATGGTAACAAAAC	GATGAACGGTACATAGTCAAGGTGCAGATG
GTTTCATTCTAGCAAAAATCCATATGGTAACAAAAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_AP019695.1\|WP_163052185.1\|1983865_1985101_-\|phosphoribosylamine--glycine-ligase	unknown	unknown	gnl\|CDD\|234856
NZ_AP019695.1\|WP_118277584.1\|2000514_2001996_-\|TIGR02677-family-protein	unknown	unknown	gnl\|CDD\|378233
NZ_AP019695.1\|WP_163052186.1\|1988370_1989243_-\|hypothetical-protein	unknown	unknown	unknown
NZ_AP019695.1\|WP_163052680.1\|1989552_1990446_-\|type-II-CRISPR-associated-endonuclease-Cas1	cas1	cd09720_cas1_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|274694
NZ_AP019695.1\|WP_163052180.1\|1974549_1974873_-\|PTS-lactose/cellobiose-transporter-subunit-IIA	unknown	unknown	gnl\|CDD\|376749
NZ_AP019695.1\|WP_118277583.1\|1999387_2000518_-\|TIGR02678-family-protein	unknown	unknown	gnl\|CDD\|378234
NZ_AP019695.1\|WP_163052182.1\|1975919_1977824_-\|PTS-transporter-subunit-EIIA	unknown	unknown	gnl\|CDD\|226234
NZ_AP019695.1\|WP_163052184.1\|1982180_1983851_-\|formate--tetrahydrofolate-ligase	unknown	unknown	gnl\|CDD\|376511
NZ_AP019695.1\|WP_163052190.1\|2002255_2002849_+\|transcriptional-regulator	unknown	unknown	gnl\|CDD\|227645
NZ_AP019695.1\|WP_163052183.1\|1978062_1979328_-\|UDP-N-acetylglucosamine-1-carboxyvinyltransferase	unknown	unknown	gnl\|CDD\|183779
NZ_AP019695.1\|WP_163052187.1\|1990546_1993885_-\|type-II-CRISPR-RNA-guided-endonuclease-Cas9	cas9	cd09643_cas9_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|187774
NZ_AP019695.1\|WP_115716388.1\|1989239_1989563_-\|CRISPR-associated-endonuclease-Cas2	cas2	COG3512_cas2_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|226043
NZ_AP019695.1\|WP_115716390.1\|1986464_1986650_+\|hypothetical-protein	unknown	unknown	unknown
NZ_AP019695.1\|WP_115716394.1\|1981185_1982019_-\|hypothetical-protein	unknown	unknown	unknown
NZ_AP019695.1\|WP_118277586.1\|2002861_2003740_+\|nucleotidyl-transferase-AbiEii/AbiGii-toxin-family-protein	unknown	unknown	gnl\|CDD\|378065
NZ_AP019695.1\|WP_163052188.1\|1994097_1995369_-\|DUF2399-domain-containing-protein	unknown	unknown	gnl\|CDD\|274255
NZ_AP019695.1\|WP_163052179.1\|1974209_1974548_-\|PTS-sugar-transporter-subunit-IIB	unknown	unknown	gnl\|CDD\|99906
NZ_AP019695.1\|WP_115716395.1\|1979634_1981119_+\|DUF1846-domain-containing-protein	unknown	unknown	gnl\|CDD\|378092
NZ_AP019695.1\|WP_163052189.1\|1995365_1999388_-\|TIGR02680-family-protein	unknown	unknown	gnl\|CDD\|274256
NZ_AP019695.1\|WP_163052181.1\|1974876_1975923_-\|aminopeptidase	unknown	unknown	gnl\|CDD\|182170

Protein	Function_ID	Function_description	E-value
NZ_AP019695.1\|WP_163052185.1\|1983865_1985101_-\|phosphoribosylamine--glycine-ligase	gnl\|CDD\|234856	PRK00885, PRK00885, phosphoribosylamine--glycine ligase; Provisional.	0
NZ_AP019695.1\|WP_118277584.1\|2000514_2001996_-\|TIGR02677-family-protein	gnl\|CDD\|378233	pfam09660, DUF2397, Protein of unknown function (DUF2397). Proteins in this entry are encoded within a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria including: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria).	1.19227e-174
NZ_AP019695.1\|WP_163052680.1\|1989552_1990446_-\|type-II-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|274694	TIGR03639, cas1_NMENI, CRISPR-associated endonuclease Cas1, subtype II/NMENI. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is a prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 variant of the NMENI subtype of CRISPR/Cas system.	3.84095e-88
NZ_AP019695.1\|WP_115716388.1\|1989239_1989563_-\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|226043	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms].	7.86953e-35
NZ_AP019695.1\|WP_118277583.1\|1999387_2000518_-\|TIGR02678-family-protein	gnl\|CDD\|378234	pfam09661, DUF2398, Protein of unknown function (DUF2398). Proteins in this entry are encoded within a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria including: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria).	2.1133e-102
NZ_AP019695.1\|WP_163052182.1\|1975919_1977824_-\|PTS-transporter-subunit-EIIA	gnl\|CDD\|226234	COG3711, BglG, Transcriptional antiterminator [Transcription].	1.16357e-33
NZ_AP019695.1\|WP_163052184.1\|1982180_1983851_-\|formate--tetrahydrofolate-ligase	gnl\|CDD\|376511	pfam01268, FTHFS, Formate--tetrahydrofolate ligase.	0
NZ_AP019695.1\|WP_163052183.1\|1978062_1979328_-\|UDP-N-acetylglucosamine-1-carboxyvinyltransferase	gnl\|CDD\|183779	PRK12830, PRK12830, UDP-N-acetylglucosamine 1-carboxyvinyltransferase; Reviewed.	0
NZ_AP019695.1\|WP_163052187.1\|1990546_1993885_-\|type-II-CRISPR-RNA-guided-endonuclease-Cas9	gnl\|CDD\|187774	cd09643, Csn1, CRISPR/Cas system-associated protein Cas9. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Very large protein containing McrA/HNH-nuclease related domain and a RuvC-like nuclease domain; signature gene for type II.	1.86289e-109
NZ_AP019695.1\|WP_163052180.1\|1974549_1974873_-\|PTS-lactose/cellobiose-transporter-subunit-IIA	gnl\|CDD\|376749	pfam02255, PTS_IIA, PTS system, Lactose/Cellobiose specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. The lactose/cellobiose-specific family are one of four structurally and functionally distinct group IIA PTS system enzymes. This family of proteins normally function as a homotrimer, stabilized by a centrally located metal ion. Separation into subunits is thought to occur after phosphorylation.	8.16816e-33
NZ_AP019695.1\|WP_163052190.1\|2002255_2002849_+\|transcriptional-regulator	gnl\|CDD\|227645	COG5340, COG5340, Predicted transcriptional regulator [Transcription].	1.67619e-05
NZ_AP019695.1\|WP_118277586.1\|2002861_2003740_+\|nucleotidyl-transferase-AbiEii/AbiGii-toxin-family-protein	gnl\|CDD\|378065	pfam08843, AbiEii, Nucleotidyl transferase AbiEii toxin, Type IV TA system. This family was recently identified as belonging to the nucleotidyltransferase superfamily. AbiEii is the cognate toxin of the type IV toxin-antitoxin 'innate immunity' bacterial abortive infection (Abi) system that protects bacteria from the spread of a phage infection. The Abi system is activated upon infection with phage to abort the cell thus preventing the spread of phage through viral replication. There are some 20 or more Abis, and they are predominantly plasmid-encoded lactococcal systems. TA, toxin-antitoxin, systems on plasmids function by killing cells that lose the plasmid upon division. AbiE phage resistance systems function as novel Type IV TAs and are widespread in bacteria and archaea. The cognate antitoxin is pfam13338.	1.14054e-22
NZ_AP019695.1\|WP_163052188.1\|1994097_1995369_-\|DUF2399-domain-containing-protein	gnl\|CDD\|274255	TIGR02679, conserved_hypothetical_protein, TIGR02679 family protein. Members of this protein belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). [Hypothetical proteins, Conserved].	2.59649e-34
NZ_AP019695.1\|WP_163052179.1\|1974209_1974548_-\|PTS-sugar-transporter-subunit-IIB	gnl\|CDD\|99906	cd05564, PTS_IIB_chitobiose_lichenan, PTS_IIB_chitobiose_lichenan: subunit IIB of enzyme II (EII) of the N,N-diacetylchitobiose-specific and lichenan-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In these systems, EII is either a lichenan- or an N,N-diacetylchitobiose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. In the chitobiose system, these subunits are expressed as separate proteins from chbA, chbB, and chbC of the chb operon (formerly the cel (cellulose) operon). In the lichenan system, these subunits are expressed from licA, licB, and licC of the lic operon. The lic operon of Bacillus subtilis is required for the transport and degradation of oligomeric beta-glucosides, which are produced by extracellular enzymes on substrates such as lichenan or barley glucan. The lic operon is transcribed from a gammaA-dependent promoter and is inducible by lichenan, lichenan hydrolysate, and cellobiose. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include chitobiose/lichenan, ascorbate, lactose, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.	3.25359e-38
NZ_AP019695.1\|WP_115716395.1\|1979634_1981119_+\|DUF1846-domain-containing-protein	gnl\|CDD\|378092	pfam08903, DUF1846, Domain of unknown function (DUF1846). This family of proteins are functionally uncharacterized. Some members of the family are annotated as ATP-dependent peptidases. However, we can find no support for this annotation.	0
NZ_AP019695.1\|WP_163052189.1\|1995365_1999388_-\|TIGR02680-family-protein	gnl\|CDD\|274256	TIGR02680, conserved_hypothetical_protein, TIGR02680 family protein. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length. [Hypothetical proteins, Conserved].	2.67416e-172
NZ_AP019695.1\|WP_163052181.1\|1974876_1975923_-\|aminopeptidase	gnl\|CDD\|182170	PRK09961, PRK09961, aminopeptidase.	1.51087e-157

>NZ_AP019695.1|WP_115716390.1|1986464_1986650_+|hypothetical-protein
MIDPKNHTYHVEILGSEEKFNEMIEAIRAKAVWLSDEEIEEILDEETEKNIGPSFWYSQMY
>NZ_AP019695.1|WP_163052185.1|1983865_1985101_-|phosphoribosylamine--glycine-ligase
MNVLVIGKGGREHALVYAVSKSAKVDKIYAAPGNPGMAQLAECVDISDSDVEALVAFAKDKQIDLTIVGPEHTLSLGVVDAFQKEGLKIFGPSKDAAQVESSKDFAKKIMVKHGIPTAAYATFDNEEDAVAYVKEQGAPIVVKEDGLKAGKGVTVAQTLEEALDALHIAFSIPNNKVVIEECLCGFEFSLICFVCDDIVLPMQIAQDHKCAYDGDKGPNTGGMGVYSPVKKITPAIIDEAMETIMKPMAKAMMEEGHPFTGFLYGGLMLTDKGIKTIEFNARFGDPEAEVILPRLKSDFVEVIENIMNHKTVELTWDEEVTLGVVMASEGYPASSTKGAVMKGFEDVDSMIFHMGTKEIDGNLVTDGGRVLIVVSKEKTLEEAYKKAYEDVEKITCDKLFYRKDIGKKDMQ
>NZ_AP019695.1|WP_163052184.1|1982180_1983851_-|formate--tetrahydrofolate-ligase
MFKTDLEIAQECVLEPIRDVAAKIGVTEDDLEYYGKYKAKVSLDLLNRNKDKEDGKLILVTAINPTKAGEGKSTTTVGLGDALNRMGKKTMIALREPSLGPVFGLKGGAAGGGYAQVVPMEDINLHFTGDMHAITTANNLISACLDNHIHQGNALDIDIEHVTWKRCLDMNDRTLRNIRIGMGAKANGVERQDGFNITVASEVMAVLCLATSLSDLKTRLGNMLVAYNTKNEPIYVKDLGIEGALAMVLKDAIKPNMVQTLEHNPVLIHGGPFANIAHGCNSILATKTCLKLADYTVTEAGFGADLGAEKFLDIKCRFGNLKPNAVVIVATIRALKQHGNVAYEDLKEENVEAMLEGCANLAKHIDTVKQFGLPYIVAINEFASDTPKEVEALENWCKEHGHPMSLSQVWAKGGEGALDLAEKVVALCEEENSYAPLYDVEDSIEDKIHTIATKVYGADGVEFSEEAKQQIALYNKMGWDKMPICMAKTQMSLSDDAKKYGAPKGFMITVRELNPSLGAGFLVALTGKVLTMPGLPAVPAANNMDIDEEGHIKGLF
>NZ_AP019695.1|WP_115716394.1|1981185_1982019_-|hypothetical-protein
MNRLRLWGKAVKMEIREHKSTFAVYVILRALVIVMMILQILNKNYENAFLCILTLFLFIVPSIIQLQFRIELPKTLEVIILLFIFSAEILGEISSFYILFPMWDTVLHTLNGFLAAAIGFSLVDLLNQSERMEFKLSPLFMAIVAFCFSMTIGVLWEFYELFMDQFMGLDMQKDTIIHSFHSVLLDPTKSNIPILVDNIKDVVVNGKSLGLGGYIDIGLLDTMEDLLVNFIGAFVFSIFGYFYVKSRGKHHFATRFIPRRKKHSRDYLHIVKEQSRK
>NZ_AP019695.1|WP_115716395.1|1979634_1981119_+|DUF1846-domain-containing-protein
MNKIAFDNEKYLKMQSEHILERINKFDNKLYLEFGGKLFDDHHAARVLPGFQPDSKLNMLLQLKEQVEIVIAVCASDIEKNKIRSDMGITYDVEVLRLIDAFRGTGLYVGSVVITQYANQSAADAFKKHLENLGVKVFLHYPISGYPNNTSFIVSDEGYGKNDYIETTKPLIVVTAPGPGSGKMATCLSQLYHEHKRGIKAGYAKFETFPIWNLPLKHPVNLAYEAATADLNDINMIDPFHLEAYGETTVNYNRDVEIFPVLNAMFEKILGTSPYKSPTDMGVNMVGYCIVDDEAAKEASNCEIIRRYYKAKVDYKKGYTDENTIRKIEIIMSQADITDKDRKCVQPAIEKAEETGAPAVAIELPDGRIVTGKTTSLLGASSAALLNALKALGNINDEIPLISPSIIEPIQKLKVNSLGNHNPRLHTDEILIALSISATMNPISHLALQQLDKLKDCEAHSTVILSQVDANTFRKLKINLTCEDRYQTKKLYHK
>NZ_AP019695.1|WP_163052183.1|1978062_1979328_-|UDP-N-acetylglucosamine-1-carboxyvinyltransferase
MEEVIKIKGGKKLNGTVRIGGSKNATVALIPASILANGPVTICGVPSISDVESLSVLLQDLGVMVDVRSSDSILIDTENMQNKPLVHDAVNKLRASYYFMGALLGKYGHVEIRMPGGCYLGPRPIDLHLKGFEALGATVKYDHGCYVLDAPELVGTKIFLDIASVGATINIMMAAVHAKGRTTIENAAKEPEIIDVATLLNKMGAQIRGAGTNVITIDGVDELSGCFHEIIPDRIEAATYIVLAAAAGEEVKIENIIPHHLESLTSKLAELGVDMKIDIDSITIHGGLDNLHPIDIKTLPYPGFATDIQQPLTALLTQAQGQSIVTETIYTERFKHCFELEKMGAKINVMTPSSFINGPTPLSGAEVSATDLRCGACLVIAGLIADGVTTIRNIYHIERGYEHIVEKLTAIGAQIWRETFD
>NZ_AP019695.1|WP_163052182.1|1975919_1977824_-|PTS-transporter-subunit-EIIA
MRDLKIIEELLYSEQYRSIEYLSKLLDVSTRTIRNDLKYLQKLGETNGFSIHQKRKSGFRIEIIDEALFQKYREGCEQCIPYVSTDRIFTIIAYLLMRKEYLTQEMLADNLNVSKSIIKVDMGKVEEHLYNHQIELLKKAHYGQKVECSLLQRVLYLSELYEQGNPYLVSQVDKGLKETAIRKLEKDLIRILKEFHLETNYVELKKLDIFLKISVFLSLHNIGSEKEELIEEEKVYKNAAIMLEASIREHFPTSLSKEMIGCIARYLKQKTKPAGSILLYNQELKEEVEWFLDKVDKKNHTTFNEDEEFKKSLLAHVFLLIDRLHQQISFSNPMVHEISVKYPVVFNICIQFADMLEEKYHVKATRDEIGFIATHFAAHMEKELHQNLNSFERIAIVCSSGGGSAFLIKLKMESVFPSSTIQTFSMLDMEELHQYHPDIIFTICQLDEHFDVPVILIKELLDDEDIRNIKSMFEFGKFYSSTNEKPFGSLFRKDAFYVFDRGTYKELIENMGKDLEKHAYCEKGYAEYVMEREHVLSTVYQNGVAIPHPVEMCGKESMISVGLVQTPMVEEGKDVKLIFMVNLKKGDLKFHQNITRALFDVMQDGEFVEMLRHSETFEDFVRSINQIHLEGGKL
>NZ_AP019695.1|WP_163052181.1|1974876_1975923_-|aminopeptidase
MKLEFLEKLSNADGIASNEGEVRKVLYDELKDYADEVSCDNLGSIIFKKGNSGPKIMICAHMDEVGFIVRSISDMGQVMLMHVGGVKPLAQFMQRVRITTEDGRKIHGIIQATYDNGSATKVYVDLGADNAQEVYALGIKEGDMVTYTTEFEQFAIDGCVAGKAFDDRLGCFIMGEVLKRLKDKKHPNTVYMVGTSSEEVGIRGAKTAVYKVNPDIVLPIDVACFQDEFVRNHTNRRQIGKGMMQTNFDRTLAPNRVLMKYIRQTADRLQKPLQQDMFNGGGTDGGEAHKSRDGKPTAVSCLPVRYGHCAYSIAKLQDIQDAIDIFTEIIMNFDEDAYKDCIDFLKGE
>NZ_AP019695.1|WP_163052180.1|1974549_1974873_-|PTS-lactose/cellobiose-transporter-subunit-IIA
MSELEQQIIGIISSAGDSKGKAFEALRKVKEGDYEGARALMEESRKIDLEAHKIQTKLIQSEMDPDAEKPEINLLMVHAQDHYMTSQLARDLIETLIEVFETKEGGK
>NZ_AP019695.1|WP_163052179.1|1974209_1974548_-|PTS-sugar-transporter-subunit-IIB
MRILLCCAGGFSTNMLMQNMKKVVKESAKLNEDDFKFTAIPADSLESEIDNWDIVLVGPQVSHKVDFIESVCKPKNVPFTVIDKDVYGQMDGATVLKLALVTYKKHQMNNAG
>NZ_AP019695.1|WP_163052186.1|1988370_1989243_-|hypothetical-protein
MNKITIDNGSNSIDIQMDHKKYIIGNNMQEKRNLELMIKQFFQKTESEYRSENNLEAKILMDGEAVSNKRMLFLEINPYYSLIEDCKLSSKSLVLKYLEKKLQDKIYFDTIRTLDILFQSLAEEANDDNLKIAFHEMNFKQLLKILEAYFSDDFQKDEFDLSYEDVILFQIHLINEIIAHTEDKDMIIVSVNIPIITDTIIEEMKSTGHSFFFIFTNNYCEKMKLDEVILSEEELYDLADINYIFYEIEETYNEIQQVEVLKENMKKFVKLNYTYKAFNVIDELTHFSNK
>NZ_AP019695.1|WP_115716388.1|1989239_1989563_-|CRISPR-associated-endonuclease-Cas2
MIYEFMRLILFFDLPVTTKKDRKTYAQFRKYLIQNGYMMMQYSVYCKIFANREAAVKHVANLEKSVPKKGQIRLLLVTEKQYAKIEIITGGKSMQETILNSDSFIKI
>NZ_AP019695.1|WP_163052680.1|1989552_1990446_-|type-II-CRISPR-associated-endonuclease-Cas1
MGHRVIYVEKCEHLKLYLDNLKVEINGNDILFPISDIQILVIDNYKSNMSVPLINKLTENNVCTVLCGIDHLPKSYLLPMNGHFSSSGNIEKQIHWENEKKDYIHQEIVRCKILNQIEILKQNEKSFEVIKKLYNFTDDLLPGDITNREGLAAKMYFRELYGDNFIRFDEDVINAGLNYGYSIFRSLITSIIVAKGYLPNLGIFHKGKQNMFNLSDDIIEVFRPIVDNYVYTEMREDLFFKKEHKEALIQLTNKRVVIDDRKQTVANAINVMLDSIFRYFDDVDTKLLFPLPILYDL
>NZ_AP019695.1|WP_163052187.1|1990546_1993885_-|type-II-CRISPR-RNA-guided-endonuclease-Cas9
MNSYVLGLDIGITSVGYGVIDLKTNNFVDYGVRLFKEGTAAENEARRSARGRRRLLSRRKNRLEDMRNLLKKYQIIDENFKPLSNVYELRNKGLSTSLTNDELASALLHLTKHRGSVLDTVEDDEEAAKDSEKTKAVLGTNAKLLAQGRYVCQLQLERLQSEGKVRGHANNFKTTDYIEEANEILKHQNIDEKLKEKIIEIIQRKRAYYEGPGSEKSPTPYGRFIEVDGQIQQIDLIEKMRGKCSVYPNESRAPKMSLSAELFNFLNDLNNLTVDGEKLTTEEKNQILKVVSQKGSITLKQVAKLLEVEEDSFAGYRIDKSNKPLLTEFKGYKKVKKIFKECGEDISFHDYEKIDFIIEIITKQKGMQERKTSLENSKYTFTNTLLDKLVLMNGVSGYHALSFKALRELNKELYMTDMNQMQILHQMNLFDKNRISHKGRNNIMADETAILSPVARRAQNETFKVINELRKKYGEFDSIVIEMTRDKNSVEQAKKQRESQRYFEGLNKEVNRILEEYGYDADKVNGKTKTKLRLYMEQDGKSAYTLQPLDIRRIISDPTYTEIDHVIPVSISLDDSLNNKVLITRMENQLKGQMTPVEAYQKGKFVDTGCTLVEYIESVKNNKKYNNKKKGNLLFKEDITKFSVIQQFINRNLVDTSYACRVVLNTLSDYFKDNGIDTKVHTVVGKLTNKLRQQIQLEKIRDEDYLHHAVDALIVASIKKMGLLNSYLMKYTFDKLYDEMTGEVKEVPEDKAFFDEKYISFIVNLKTLYMQSNQYYRGILERKEMVYAPIKISHKINTKPNRQVADETIYSTRNIDNKEMIVQKYKDIYEPKFDKLTNDTLSGVTEQKYLMARNDPQTFDILKQIVMHHFDEFKDSKEHYKKEVKKGVVTYKLVGDNPLYLYKEEFGPVRKSSKKGNGPVITSMKYVDRQLGSHIDISKNYDVKNKKVILKQVSPYRTDIYLCSDGKYRFVTVRYKDVFYKKEKQKYVIDANWYVEEKKRKKIDENANFICSLHRDELIGIVRKAGEKYIYDESTEHGGEVKYHDGIHPEILKFTATNDDERGYIELKPIFTYCKKQLKPAILNCVEVSKYATDVLGNLYKVKQNILKLEFE
>NZ_AP019695.1|WP_163052188.1|1994097_1995369_-|DUF2399-domain-containing-protein
MNIEQEFYLFLKERKGLHRLFDAWITQYERLGYAGGSVVVENVKQEEMEAIGTFLGCDLRKQKQIHIYWRQMQKAMDNSRFSTCNIEEVFTLWKGKPLRIKKEERRKKEEFENKMIEKVLEETKDTYFPMWWELQKKQYPEFFHKVKKLLLEDKETLLLCIQAIEQLPYLTHNKKPLAVFAAEISKDPHFFDKGMSYQMLYKGICYRMKKEEPNTLEEKNKLFYDAGLIRDDISNYCMLCHINAEIENQVHAGWNGFFMNYETWNVSLWNLSQIDRIKKDIKKVYILENPSVYRMLCEYGKKYNVNDIGFLCTSGQLNLCAYILLDMLVDSKIQLYYSGDFDPEGMQIADKLKQRYKENIVLWHYDEHDYRKCISNKTISERRLMMLRNIKDLKLMQVSQRIEQEKRSGYQEKLIDVYKEDLL
>NZ_AP019695.1|WP_163052189.1|1995365_1999388_-|TIGR02680-family-protein
MEFVSKWHPNRMGMVDFWYYTNEEFHFDHGHMLLRGSNGSGKSVTMQSFIPLLLDGNKSSERLDPFGTRSRKIENYLLEEEGGRDDRIGYLYLEFKREESDTYKTIGMGLHARKGKPLDTWYFVIEDNRRIGVDIQLMQNDLAISRQSLKNLIQEQLYTSQKVYCEKVNQALFGFERIEEFKEAIDLLLQLRSPKLSNSLKPSMLNEILNNSLRPLSEEDLRPMSEAISNMDNIKDQLDALKQSRQSANAIYQVYEQYGKALLYEKLHLYQNAYKEEEMQKKKQDSFYREQEENKKIKEECLEKQKDYQRKIELLKKEEEDLNASDRLRLVKEVQNLEKEYAQLKEELQRKLQALDKKETQYHETKKEYKKQKDEYEVLCMQIDEKLKEMDDLQEELQLEEHDAFRLEFQEETTKDYDFTYTLRFVKEKEENLRQVILKLKEYTSQKEVLEQLIDSCQQREDEVQKQRSLVSKYESLYDEMLDEYREGMNSWYASLKQLHIEKSALEDMQKFLSEYEERKTFLPIQNIIQQAFHIDKEQLSTTRIQLENEQRLVQKELLRLHQEIEEWENKEDPMPFIEDGRKQNRAFLDKQGISYRPLYTLLEFDEQVNEELKGQIEEYLQRSRLLNALLVHKDQKETILKKEIGSFDDYVFTDKEVEYLSSWYLKGNTLQELYQSLFAFFEELHISVNGLSFDEDGYQMHAIYGTLAKDKQVVFVGKKAREQYRKDKIEELKALKEEQQKEETRLKDKIADILGKEEILKEESASFLTEDDLQKALLMWKEEEGRLSLLERSLNEAKKRVEEKQAMLQKLYLDVQKMASSFPVKLQVEAFEEYRSSFEDYKQYLQDICTMYPSSRKALEMKLYLSVKLNELEEDIDTVKYEKDQLDEQSILKQQLLVQKQQQLKELGGDDITKRLQEISDLLIRLPKEQLQNERKLGSLEEAEIKINEELRHLEVDLQEKEQTTALYLDILKEQVENGCIRIPLEEYDDLVVTVMLYEKQNPIQKKSDTLKGDVQGVFYAQRGSLQDYQVSFTMDDLWEEVDGISSRIHLKAKFHGKQLPFEQLLEQLDTAIETQKHLLEDSDRHLFEDILVNIISKKIRIRIQDSKHWVETMNRYMNAMTDSSSGLRLSLQWRNKKAESEEELDTKELVELLQKDVGMLKESDLKKLSTHFRSRIESVRRIMDEEDNMQSFHQLMRVVMDYRQWFEFRILAQKAKDTKKELTNQLFFSFSGGEKAMAMYVPLFSAVAAKFESSRKDAPLLIALDEAFAGVDDKNISIMFALIEKFNFDYIMNSQVLWGDYPTVHHLAIYELFRPDNARFVTVIPYEWDGKVKRMKME
>NZ_AP019695.1|WP_118277583.1|1999387_2000518_-|TIGR02678-family-protein
MNCIEQLLQQRWILKKQNPQLYYEIKDNQKELRKKLQDRFGYVLIINPLLAKLEKIPGKAEAWMGIQEFETIQEYQMFCYLLMYLEDKEIEEQFVLSMLSEYIQLRFPQGQVSWNSYQCRRQLIHVLQYALKYNLILQSDGDQDAFLKNEESEVLYENTGNSRYFMRTFARDILTFQNPEDFMQSEWVDMEEDRGIVRRQRSYRRLLLSCGVYPSLDKEKDEDYTYIRNYRGKIEQDFRSMFSCDLHVHSSSAYLMLEEDCSMGKIFPQNGALHDLMLVFHSEIHKKLSKYTLRLSANEVLIMEKEKTLTLMHTVVKRNRALLPKKYQEEALSAQKLVENLYTMFLLYGFMEEDEENCYFYPIIGKIQGEFVEVKE
>NZ_AP019695.1|WP_118277584.1|2000514_2001996_-|TIGR02677-family-protein
MKMNDKLIKPIREVNYLRADNVERYRVIMRFFYEEHEKIHYWLYKEDVFQMMKEFSMFQEYTMEQCQNDLQSLSEWGNLTAHQDTTKVQTVQEFKNKRYRYQLSEYSVAIERLTIELENLEVEGASLQPTLLERIRNQISEAKQIVNKSEEEVYGWWHSLNDDFIRLNQNYQDYIRTLNSAKAEELMKSKEFLLFKDKLINYLRTFVKNLQNHGLVIESLLKDLNKEEIASIFDKVVSYEMKIPRLGKQLKKEDVLENCYGRWESLYDWFAAENGENEVDRLYHITNEIIRRMTRYALQIGEFQNQGTNRREEYQHVANIFSKCTNILEAHKLSAMIFGCETTLHLKHIEPRETDSIHSGVYEEKSVSLLLEPRSRVIRKKTVRKPADDYSLEKEIQKQEVIRKAEERQKKIDALIHNGKITFSTLPLVDQDIRKILLGWISRAMAVKTRKAKTDQGKEYHVVYEKDGECSVSFEDGNLVMPCFEIVFEEDGE
>NZ_AP019695.1|WP_163052190.1|2002255_2002849_+|transcriptional-regulator
MYSKKEFELYVKSENGILLYSDMISLGLGRYQIKELEKDGTIEKVERGIYCHKDYTSDTMKIYQKMNNKMIYSNETALYLHDLVDRYPMVYTATTISGYHLREKENLKLYYVKEELWDIGKMEIKDPWGNILNVYDMERTICDIVKNQKKIELQVYLQAIKNYFQRKDKNLRKLARYAKKMGIQDKIRDIVYMHMEP
>NZ_AP019695.1|WP_118277586.1|2002861_2003740_+|nucleotidyl-transferase-AbiEii/AbiGii-toxin-family-protein
MIYRNTDNWKSEIKKSAKLKGVDVPSMQQRFILEEFAKKIGSSPYGDRLILKGGFIVSTLLGMDTRTTRDLDVTCRTTIYDISEMENIVKKVLKTPSDSFFEYELADIKQAQKDDENAGFIVSINARKDNISLNLKIDVSNNTLIYPDAIRTTLPSMFNEEDIKLLSYPLENIIAEKYETTLDRGEFNSRMRDLYDIYFLMKDSSQLVDKNLLADTIIKVSEERGTIDNLYEFEEILEELQNSTAFQSSFKKHGEKFGFEDITLKDVFKIFREIHDMVEDKLNIDESTSIKI

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NZ_AP019695_1	1.2\|1987194\|30\|NZ_AP019695\|PILER-CR,CRISPRCasFinder,CRT	1987194-1987223	30	NZ_AP019695.1	1560418-1560447	0	1.0

1. spacer 1.2|1987194|30|NZ_AP019695|PILER-CR,CRISPRCasFinder,CRT matches to position: 1560418-1560447, mismatch: 0, identity: 1.0

tatgataaaggggaatatgtaaaggtaaca	CRISPR spacer
tatgataaaggggaatatgtaaaggtaaca	Protospacer
******************************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_AP019695_1	1.11\|1987788\|30\|NZ_AP019695\|PILER-CR,CRISPRCasFinder,CRT	1987788-1987817	30	MN856080	Bacteriophage sp. isolate 174, complete genome	6172-6201	5	0.833
NZ_AP019695_1	1.1\|1987128\|30\|NZ_AP019695\|PILER-CR,CRISPRCasFinder,CRT	1987128-1987157	30	MN694251	Marine virus AFVG_250M445, complete genome	25291-25320	6	0.8
NZ_AP019695_1	1.2\|1987194\|30\|NZ_AP019695\|PILER-CR,CRISPRCasFinder,CRT	1987194-1987223	30	MH511048	Podoviridae sp. isolate ctbh1, complete genome	5735-5764	6	0.8
NZ_AP019695_1	1.11\|1987788\|30\|NZ_AP019695\|PILER-CR,CRISPRCasFinder,CRT	1987788-1987817	30	NZ_CP031100	Clostridium botulinum strain CFSAN034202 plasmid p1_CFSAN034202, complete sequence	5355-5384	6	0.8
NZ_AP019695_1	1.11\|1987788\|30\|NZ_AP019695\|PILER-CR,CRISPRCasFinder,CRT	1987788-1987817	30	NZ_CP014218	Clostridium botulinum strain B515 plasmid pRSJ21_3, complete sequence	25907-25936	6	0.8
NZ_AP019695_1	1.17\|1988118\|30\|NZ_AP019695\|CRISPRCasFinder,CRT,PILER-CR	1988118-1988147	30	NZ_CP019235	Bacillus thuringiensis strain YGd22-03 plasmid pYGD98, complete sequence	45755-45784	6	0.8
NZ_AP019695_1	1.17\|1988118\|30\|NZ_AP019695\|CRISPRCasFinder,CRT,PILER-CR	1988118-1988147	30	NZ_CP019235	Bacillus thuringiensis strain YGd22-03 plasmid pYGD98, complete sequence	92978-93007	6	0.8
NZ_AP019695_1	1.6\|1987458\|30\|NZ_AP019695\|PILER-CR,CRISPRCasFinder,CRT	1987458-1987487	30	MT334653	Buttiauxella phage vB_ButM_GuL6, complete genome	83675-83704	7	0.767
NZ_AP019695_1	1.9\|1987656\|30\|NZ_AP019695\|PILER-CR,CRISPRCasFinder,CRT	1987656-1987685	30	NC_009622	Sinorhizobium medicae WSM419 plasmid pSMED03, complete sequence	15451-15480	7	0.767
NZ_AP019695_1	1.10\|1987722\|30\|NZ_AP019695\|PILER-CR,CRISPRCasFinder,CRT	1987722-1987751	30	KF156338	Synechococcus phage S-MbCM7, complete genome	49665-49694	7	0.767
NZ_AP019695_1	1.10\|1987722\|30\|NZ_AP019695\|PILER-CR,CRISPRCasFinder,CRT	1987722-1987751	30	NZ_CP020541	Sphingobium herbicidovorans strain MH plasmid pSHV2, complete sequence	14596-14625	7	0.767
NZ_AP019695_1	1.11\|1987788\|30\|NZ_AP019695\|PILER-CR,CRISPRCasFinder,CRT	1987788-1987817	30	NZ_CP013615	Clostridium perfringens strain JP838 plasmid pJFP838A, complete sequence	159532-159561	7	0.767
NZ_AP019695_1	1.11\|1987788\|30\|NZ_AP019695\|PILER-CR,CRISPRCasFinder,CRT	1987788-1987817	30	NZ_CP034094	Acinetobacter baumannii strain A52 plasmid pA52-2, complete sequence	21414-21443	7	0.767
NZ_AP019695_1	1.11\|1987788\|30\|NZ_AP019695\|PILER-CR,CRISPRCasFinder,CRT	1987788-1987817	30	NZ_CP014173	Clostridium botulinum strain B609 plasmid pRSJ22_2, complete sequence	25333-25362	7	0.767
NZ_AP019695_1	1.15\|1987986\|30\|NZ_AP019695\|CRISPRCasFinder,CRT	1987986-1988015	30	NC_014628	Paenibacillus polymyxa SC2 plasmid pSC2, complete sequence	276299-276328	7	0.767
NZ_AP019695_1	1.17\|1988118\|30\|NZ_AP019695\|CRISPRCasFinder,CRT,PILER-CR	1988118-1988147	30	NZ_KY352353	Bacillus thuringiensis serovar israelensis strain 1.24 plasmid pT0124-4, complete sequence	75284-75313	7	0.767
NZ_AP019695_1	1.17\|1988118\|30\|NZ_AP019695\|CRISPRCasFinder,CRT,PILER-CR	1988118-1988147	30	LC128536	Bacillus thuringiensis serovar israelensis plasmid pBTI-6 DNA, complete sequence, strain: HD522	63603-63632	7	0.767
NZ_AP019695_1	1.17\|1988118\|30\|NZ_AP019695\|CRISPRCasFinder,CRT,PILER-CR	1988118-1988147	30	NC_010076	Bacillus thuringiensis serovar israelensis plasmid pBtoxis, complete sequence	75285-75314	7	0.767
NZ_AP019695_1	1.17\|1988118\|30\|NZ_AP019695\|CRISPRCasFinder,CRT,PILER-CR	1988118-1988147	30	NC_018510	Bacillus thuringiensis HD-789 plasmid pBTHD789-3, complete sequence	24910-24939	7	0.767
NZ_AP019695_1	1.17\|1988118\|30\|NZ_AP019695\|CRISPRCasFinder,CRT,PILER-CR	1988118-1988147	30	NZ_CP053973	Bacillus thuringiensis strain FDAARGOS_796 plasmid unnamed4, complete sequence	105121-105150	7	0.767
NZ_AP019695_1	1.17\|1988118\|30\|NZ_AP019695\|CRISPRCasFinder,CRT,PILER-CR	1988118-1988147	30	NZ_CP013279	Bacillus thuringiensis serovar israelensis strain AM65-52 plasmid pAM65-52-4-128K, complete sequence	74234-74263	7	0.767
NZ_AP019695_1	1.17\|1988118\|30\|NZ_AP019695\|CRISPRCasFinder,CRT,PILER-CR	1988118-1988147	30	NZ_CP045026	Bacillus thuringiensis strain JW-1 plasmid p4, complete sequence	75283-75312	7	0.767
NZ_AP019695_1	1.17\|1988118\|30\|NZ_AP019695\|CRISPRCasFinder,CRT,PILER-CR	1988118-1988147	30	NZ_CP039725	Bacillus thuringiensis strain BT-59 plasmid p4, complete sequence	53375-53404	7	0.767
NZ_AP019695_1	1.18\|1988184\|30\|NZ_AP019695\|CRISPRCasFinder,CRT,PILER-CR	1988184-1988213	30	NZ_CP040937	Hymenobacter sp. DG01 plasmid unnamed, complete sequence	50808-50837	7	0.767
NZ_AP019695_1	1.18\|1988184\|30\|NZ_AP019695\|CRISPRCasFinder,CRT,PILER-CR	1988184-1988213	30	NZ_CP006588	Hymenobacter sp. APR13 plasmid pHA, complete sequence	36933-36962	7	0.767
NZ_AP019695_1	1.9\|1987656\|30\|NZ_AP019695\|PILER-CR,CRISPRCasFinder,CRT	1987656-1987685	30	NC_019278	Psychrobacter sp. DAB_AL60 plasmid pP60P2, complete sequence	13833-13862	8	0.733
NZ_AP019695_1	1.11\|1987788\|30\|NZ_AP019695\|PILER-CR,CRISPRCasFinder,CRT	1987788-1987817	30	NC_014628	Paenibacillus polymyxa SC2 plasmid pSC2, complete sequence	276347-276376	8	0.733
NZ_AP019695_1	1.11\|1987788\|30\|NZ_AP019695\|PILER-CR,CRISPRCasFinder,CRT	1987788-1987817	30	NC_022111	Prevotella sp. oral taxon 299 str. F0039 plasmid, complete sequence	885356-885385	8	0.733
NZ_AP019695_1	1.11\|1987788\|30\|NZ_AP019695\|PILER-CR,CRISPRCasFinder,CRT	1987788-1987817	30	NZ_CP009595	Bacillus cereus strain 3a plasmid pBFC_3, complete sequence	110386-110415	8	0.733
NZ_AP019695_1	1.11\|1987788\|30\|NZ_AP019695\|PILER-CR,CRISPRCasFinder,CRT	1987788-1987817	30	NZ_CP009606	Bacillus cereus strain S2-8 plasmid pBFR_2, complete sequence	289099-289128	8	0.733
NZ_AP019695_1	1.11\|1987788\|30\|NZ_AP019695\|PILER-CR,CRISPRCasFinder,CRT	1987788-1987817	30	NZ_CP053994	Bacillus cereus strain FDAARGOS_780 plasmid unnamed1, complete sequence	50392-50421	8	0.733
NZ_AP019695_1	1.11\|1987788\|30\|NZ_AP019695\|PILER-CR,CRISPRCasFinder,CRT	1987788-1987817	30	NZ_CP009336	Bacillus thuringiensis strain HD1011 plasmid 1, complete sequence	220541-220570	8	0.733
NZ_AP019695_1	1.11\|1987788\|30\|NZ_AP019695\|PILER-CR,CRISPRCasFinder,CRT	1987788-1987817	30	NZ_CP053992	Bacillus cereus strain FDAARGOS_781 plasmid unnamed2, complete sequence	33408-33437	8	0.733
NZ_AP019695_1	1.11\|1987788\|30\|NZ_AP019695\|PILER-CR,CRISPRCasFinder,CRT	1987788-1987817	30	MN694693	Marine virus AFVG_250M737, complete genome	40174-40203	8	0.733
NZ_AP019695_1	1.15\|1987986\|30\|NZ_AP019695\|CRISPRCasFinder,CRT	1987986-1988015	30	MN583270	Pseudomonas aeruginosa strain NK546 plasmid pNK546b, complete sequence	191152-191181	8	0.733
NZ_AP019695_1	1.16\|1988052\|30\|NZ_AP019695\|CRISPRCasFinder,CRT,PILER-CR	1988052-1988081	30	NZ_AP022342	Enterococcus faecium strain KUHS13 plasmid pKO1, complete sequence	142943-142972	8	0.733
NZ_AP019695_1	1.16\|1988052\|30\|NZ_AP019695\|CRISPRCasFinder,CRT,PILER-CR	1988052-1988081	30	MG592596	Vibrio phage 1.232.O._10N.261.51.E11, partial genome	31787-31816	8	0.733
NZ_AP019695_1	1.18\|1988184\|30\|NZ_AP019695\|CRISPRCasFinder,CRT,PILER-CR	1988184-1988213	30	NZ_CP049042	Pseudohalocynthiibacter aestuariivivens strain RR4-35 plasmid pRR4-35_5, complete sequence	47305-47334	8	0.733
NZ_AP019695_1	1.6\|1987458\|30\|NZ_AP019695\|PILER-CR,CRISPRCasFinder,CRT	1987458-1987487	30	NZ_CP038624	Arsenophonus nasoniae strain FIN plasmid pArsFIN12, complete sequence	13885-13914	9	0.7
NZ_AP019695_1	1.11\|1987788\|30\|NZ_AP019695\|PILER-CR,CRISPRCasFinder,CRT	1987788-1987817	30	NC_014172	Bacillus thuringiensis BMB171 plasmid pBMB171, complete sequence	272001-272030	9	0.7
NZ_AP019695_1	1.11\|1987788\|30\|NZ_AP019695\|PILER-CR,CRISPRCasFinder,CRT	1987788-1987817	30	NZ_CP053290	Bacillus cereus strain WPySW2 plasmid unnamed, complete sequence	29629-29658	9	0.7
NZ_AP019695_1	1.11\|1987788\|30\|NZ_AP019695\|PILER-CR,CRISPRCasFinder,CRT	1987788-1987817	30	NC_005707	Bacillus cereus ATCC 10987 plasmid pBc10987, complete sequence	188058-188087	9	0.7
NZ_AP019695_1	1.11\|1987788\|30\|NZ_AP019695\|PILER-CR,CRISPRCasFinder,CRT	1987788-1987817	30	NC_011777	Bacillus cereus AH820 plasmid pAH820_272, complete sequence	206774-206803	9	0.7
NZ_AP019695_1	1.11\|1987788\|30\|NZ_AP019695\|PILER-CR,CRISPRCasFinder,CRT	1987788-1987817	30	NZ_CP042928	Bacillus cereus strain G1-1 plasmid unnamed, complete sequence	232370-232399	9	0.7
NZ_AP019695_1	1.11\|1987788\|30\|NZ_AP019695\|PILER-CR,CRISPRCasFinder,CRT	1987788-1987817	30	NZ_CP040341	Bacillus cereus strain DLOU-Tangshan plasmid unnamed1, complete sequence	70881-70910	9	0.7

1. spacer 1.11|1987788|30|NZ_AP019695|PILER-CR,CRISPRCasFinder,CRT matches to MN856080 (Bacteriophage sp. isolate 174, complete genome) position: , mismatch: 5, identity: 0.833

tctcttaaaatgtttattttct-tttctgca	CRISPR spacer
cctcttaaaatgtttactttctattgctac-	Protospacer
.***************.***** ** **.*

2. spacer 1.1|1987128|30|NZ_AP019695|PILER-CR,CRISPRCasFinder,CRT matches to MN694251 (Marine virus AFVG_250M445, complete genome) position: , mismatch: 6, identity: 0.8

ccattcaaactgtccctgtttcctgtaatc	CRISPR spacer
ccattcaaactgttcctgttccctgtctat	Protospacer
*************.******.*****   .

3. spacer 1.2|1987194|30|NZ_AP019695|PILER-CR,CRISPRCasFinder,CRT matches to MH511048 (Podoviridae sp. isolate ctbh1, complete genome) position: , mismatch: 6, identity: 0.8

tatgataaaggggaatatgtaaaggtaaca	CRISPR spacer
tagattgaaggggaatatgtacagataaca	Protospacer
** . *.************** **.*****

4. spacer 1.11|1987788|30|NZ_AP019695|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP031100 (Clostridium botulinum strain CFSAN034202 plasmid p1_CFSAN034202, complete sequence) position: , mismatch: 6, identity: 0.8

tctcttaaaatgtttattttcttttctgca	CRISPR spacer
tatcttataatgtttattttcttttatatc	Protospacer
* ***** ***************** *..

5. spacer 1.11|1987788|30|NZ_AP019695|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP014218 (Clostridium botulinum strain B515 plasmid pRSJ21_3, complete sequence) position: , mismatch: 6, identity: 0.8

tctcttaaaatgtttattttcttttctgca	CRISPR spacer
tatcttataatgtttattttcttttatatc	Protospacer
* ***** ***************** *..

6. spacer 1.17|1988118|30|NZ_AP019695|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP019235 (Bacillus thuringiensis strain YGd22-03 plasmid pYGD98, complete sequence) position: , mismatch: 6, identity: 0.8

tcttacttctccatcattcactggaaaaca	CRISPR spacer
gattacttctccatctttcactgtaaaatc	Protospacer
  ************* ******* ****.

7. spacer 1.17|1988118|30|NZ_AP019695|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP019235 (Bacillus thuringiensis strain YGd22-03 plasmid pYGD98, complete sequence) position: , mismatch: 6, identity: 0.8

tcttacttctccatcattcactggaaaaca	CRISPR spacer
gattacttctccatctttcactgtaaaatc	Protospacer
  ************* ******* ****.

8. spacer 1.6|1987458|30|NZ_AP019695|PILER-CR,CRISPRCasFinder,CRT matches to MT334653 (Buttiauxella phage vB_ButM_GuL6, complete genome) position: , mismatch: 7, identity: 0.767

tcgaatcaacgacttaatcaacttgattga	CRISPR spacer
cttaacaaacggcttaatcaacttgattgc	Protospacer
.. **. ****.*****************

9. spacer 1.9|1987656|30|NZ_AP019695|PILER-CR,CRISPRCasFinder,CRT matches to NC_009622 (Sinorhizobium medicae WSM419 plasmid pSMED03, complete sequence) position: , mismatch: 7, identity: 0.767

tgcttcaactcgcttatttgcgtttgaact	CRISPR spacer
ggcttcacctcgcttttttgcgttttttcc	Protospacer
 ****** ******* *********   *.

10. spacer 1.10|1987722|30|NZ_AP019695|PILER-CR,CRISPRCasFinder,CRT matches to KF156338 (Synechococcus phage S-MbCM7, complete genome) position: , mismatch: 7, identity: 0.767

tgcaaagacactctctatatctacttaagt	CRISPR spacer
tacaaatacactctctttatctacttttag	Protospacer
*.**** ********* *********  .

11. spacer 1.10|1987722|30|NZ_AP019695|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP020541 (Sphingobium herbicidovorans strain MH plasmid pSHV2, complete sequence) position: , mismatch: 7, identity: 0.767

tgcaaagacactctctatatctacttaagt	CRISPR spacer
tcccgaggcactctctatatctacttcggc	Protospacer
* * .**.****************** .*.

12. spacer 1.11|1987788|30|NZ_AP019695|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013615 (Clostridium perfringens strain JP838 plasmid pJFP838A, complete sequence) position: , mismatch: 7, identity: 0.767

tctcttaaaatgtttattttctt---ttctgca	CRISPR spacer
tcttttaaaatgtttatttttttaaacttt---	Protospacer
***.****************.**   .*.*

13. spacer 1.11|1987788|30|NZ_AP019695|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP034094 (Acinetobacter baumannii strain A52 plasmid pA52-2, complete sequence) position: , mismatch: 7, identity: 0.767

tctcttaaaatgtttattttcttttctgca	CRISPR spacer
tgttttaaaatgtttattttatttttagtt	Protospacer
* *.**************** ****. *.

14. spacer 1.11|1987788|30|NZ_AP019695|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP014173 (Clostridium botulinum strain B609 plasmid pRSJ22_2, complete sequence) position: , mismatch: 7, identity: 0.767

tctcttaaaatgtttattttcttttctgca	CRISPR spacer
tatcttataatgtttactttcttttatatc	Protospacer
* ***** ********.******** *..

15. spacer 1.15|1987986|30|NZ_AP019695|CRISPRCasFinder,CRT matches to NC_014628 (Paenibacillus polymyxa SC2 plasmid pSC2, complete sequence) position: , mismatch: 7, identity: 0.767

caaatcctgttcggttggttgaggtttaac--	CRISPR spacer
aaaatcctgttccgttggatgagg--gaatcg	Protospacer
 *********** ***** *****   **.

16. spacer 1.17|1988118|30|NZ_AP019695|CRISPRCasFinder,CRT,PILER-CR matches to NZ_KY352353 (Bacillus thuringiensis serovar israelensis strain 1.24 plasmid pT0124-4, complete sequence) position: , mismatch: 7, identity: 0.767

tcttacttctccatcattcactggaaaaca	CRISPR spacer
gattacttctccatctttcactgtaaattc	Protospacer
  ************* ******* *** .

17. spacer 1.17|1988118|30|NZ_AP019695|CRISPRCasFinder,CRT,PILER-CR matches to LC128536 (Bacillus thuringiensis serovar israelensis plasmid pBTI-6 DNA, complete sequence, strain: HD522) position: , mismatch: 7, identity: 0.767

tcttacttctccatcattcactggaaaaca	CRISPR spacer
gattacttctccatctttcactgtaaattc	Protospacer
  ************* ******* *** .

18. spacer 1.17|1988118|30|NZ_AP019695|CRISPRCasFinder,CRT,PILER-CR matches to NC_010076 (Bacillus thuringiensis serovar israelensis plasmid pBtoxis, complete sequence) position: , mismatch: 7, identity: 0.767

tcttacttctccatcattcactggaaaaca	CRISPR spacer
gattacttctccatctttcactgtaaattc	Protospacer
  ************* ******* *** .

19. spacer 1.17|1988118|30|NZ_AP019695|CRISPRCasFinder,CRT,PILER-CR matches to NC_018510 (Bacillus thuringiensis HD-789 plasmid pBTHD789-3, complete sequence) position: , mismatch: 7, identity: 0.767

tcttacttctccatcattcactggaaaaca	CRISPR spacer
gattacttctccatctttcactgtaaattc	Protospacer
  ************* ******* *** .

20. spacer 1.17|1988118|30|NZ_AP019695|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP053973 (Bacillus thuringiensis strain FDAARGOS_796 plasmid unnamed4, complete sequence) position: , mismatch: 7, identity: 0.767

tcttacttctccatcattcactggaaaaca	CRISPR spacer
gattacttctccatctttcactgtaaattc	Protospacer
  ************* ******* *** .

21. spacer 1.17|1988118|30|NZ_AP019695|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP013279 (Bacillus thuringiensis serovar israelensis strain AM65-52 plasmid pAM65-52-4-128K, complete sequence) position: , mismatch: 7, identity: 0.767

tcttacttctccatcattcactggaaaaca	CRISPR spacer
gattacttctccatctttcactgtaaattc	Protospacer
  ************* ******* *** .

22. spacer 1.17|1988118|30|NZ_AP019695|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP045026 (Bacillus thuringiensis strain JW-1 plasmid p4, complete sequence) position: , mismatch: 7, identity: 0.767

tcttacttctccatcattcactggaaaaca	CRISPR spacer
gattacttctccatctttcactgtaaattc	Protospacer
  ************* ******* *** .

23. spacer 1.17|1988118|30|NZ_AP019695|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP039725 (Bacillus thuringiensis strain BT-59 plasmid p4, complete sequence) position: , mismatch: 7, identity: 0.767

tcttacttctccatcattcactggaaaaca	CRISPR spacer
gattacttctccatctttcactgtaaattc	Protospacer
  ************* ******* *** .

24. spacer 1.18|1988184|30|NZ_AP019695|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP040937 (Hymenobacter sp. DG01 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.767

-tgatgtaagcttttcagcattaccctgtga	CRISPR spacer
tccatg-aagcttttcagcatttccctgacg	Protospacer
 . *** *************** *****  .

25. spacer 1.18|1988184|30|NZ_AP019695|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP006588 (Hymenobacter sp. APR13 plasmid pHA, complete sequence) position: , mismatch: 7, identity: 0.767

-tgatgtaagcttttcagcattaccctgtga	CRISPR spacer
tccatg-aagcttttcagcatttccctgacg	Protospacer
 . *** *************** *****  .

26. spacer 1.9|1987656|30|NZ_AP019695|PILER-CR,CRISPRCasFinder,CRT matches to NC_019278 (Psychrobacter sp. DAB_AL60 plasmid pP60P2, complete sequence) position: , mismatch: 8, identity: 0.733

tgcttcaactcgcttatttgcgtttgaact	CRISPR spacer
tgcttcaactcgctgttttgcgtcgtcagc	Protospacer
**************  *******.   * .

27. spacer 1.11|1987788|30|NZ_AP019695|PILER-CR,CRISPRCasFinder,CRT matches to NC_014628 (Paenibacillus polymyxa SC2 plasmid pSC2, complete sequence) position: , mismatch: 8, identity: 0.733

tctcttaaaatgtttattttcttttctgca	CRISPR spacer
ctccttaaaatttttattttcttttaaata	Protospacer
...******** *************  ..*

28. spacer 1.11|1987788|30|NZ_AP019695|PILER-CR,CRISPRCasFinder,CRT matches to NC_022111 (Prevotella sp. oral taxon 299 str. F0039 plasmid, complete sequence) position: , mismatch: 8, identity: 0.733

tctcttaaaatgtttattttcttttctgca	CRISPR spacer
tctcttaaaatgtttattctctgtatgctt	Protospacer
******************.*** * .  .

29. spacer 1.11|1987788|30|NZ_AP019695|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP009595 (Bacillus cereus strain 3a plasmid pBFC_3, complete sequence) position: , mismatch: 8, identity: 0.733

tctcttaaaatgtttattttcttttctgca	CRISPR spacer
ttgctgaaaatgtttattttctttaccaac	Protospacer
*. ** ****************** *..

30. spacer 1.11|1987788|30|NZ_AP019695|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP009606 (Bacillus cereus strain S2-8 plasmid pBFR_2, complete sequence) position: , mismatch: 8, identity: 0.733

tctcttaaaatgtttattttcttttctgca	CRISPR spacer
ttgctgaaaatgtttattttctttaccaac	Protospacer
*. ** ****************** *..

31. spacer 1.11|1987788|30|NZ_AP019695|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP053994 (Bacillus cereus strain FDAARGOS_780 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.733

tctcttaaaatgtttattttcttttctgca	CRISPR spacer
ttgctgaaaatgtttattttctttaccaac	Protospacer
*. ** ****************** *..

32. spacer 1.11|1987788|30|NZ_AP019695|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP009336 (Bacillus thuringiensis strain HD1011 plasmid 1, complete sequence) position: , mismatch: 8, identity: 0.733

tctcttaaaatgtttattttcttttctgca	CRISPR spacer
tatcataaaatgttaattttcttttgattg	Protospacer
* ** ********* **********   ..

33. spacer 1.11|1987788|30|NZ_AP019695|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP053992 (Bacillus cereus strain FDAARGOS_781 plasmid unnamed2, complete sequence) position: , mismatch: 8, identity: 0.733

tctcttaaaatgtttattttcttttctgca	CRISPR spacer
ttgctgaaaatgtttattttctttaccaac	Protospacer
*. ** ****************** *..

34. spacer 1.11|1987788|30|NZ_AP019695|PILER-CR,CRISPRCasFinder,CRT matches to MN694693 (Marine virus AFVG_250M737, complete genome) position: , mismatch: 8, identity: 0.733

tctcttaaaatgtttattttcttttctgca	CRISPR spacer
attaataaattgtttattttctttcctgtc	Protospacer
 .*  **** **************.***.

35. spacer 1.15|1987986|30|NZ_AP019695|CRISPRCasFinder,CRT matches to MN583270 (Pseudomonas aeruginosa strain NK546 plasmid pNK546b, complete sequence) position: , mismatch: 8, identity: 0.733

caaatcctgttcggttggttgaggtttaac	CRISPR spacer
taatttctgttcggttggttgaggcgcagg	Protospacer
.** *.******************. .*.

36. spacer 1.16|1988052|30|NZ_AP019695|CRISPRCasFinder,CRT,PILER-CR matches to NZ_AP022342 (Enterococcus faecium strain KUHS13 plasmid pKO1, complete sequence) position: , mismatch: 8, identity: 0.733

aaatcattaggtttatttttccaacaacgt	CRISPR spacer
ggaaaaataggtttatttttcaaacaacta	Protospacer
..*  * ************** ******

37. spacer 1.16|1988052|30|NZ_AP019695|CRISPRCasFinder,CRT,PILER-CR matches to MG592596 (Vibrio phage 1.232.O._10N.261.51.E11, partial genome) position: , mismatch: 8, identity: 0.733

aaatcattaggtttatttttccaacaacgt	CRISPR spacer
aaatcattaggtttctttttcgacatggat	Protospacer
************** ****** *   . .*

38. spacer 1.18|1988184|30|NZ_AP019695|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP049042 (Pseudohalocynthiibacter aestuariivivens strain RR4-35 plasmid pRR4-35_5, complete sequence) position: , mismatch: 8, identity: 0.733

tgatgtaagcttttcagcattaccctgtga	CRISPR spacer
gaactgaagcttttcagctttaccatgtgc	Protospacer
 .*.  ************ ***** ****

39. spacer 1.6|1987458|30|NZ_AP019695|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP038624 (Arsenophonus nasoniae strain FIN plasmid pArsFIN12, complete sequence) position: , mismatch: 9, identity: 0.7

tcgaatcaacgacttaatcaacttgattga	CRISPR spacer
ataaatcaacgtattaatcaacttgacaac	Protospacer
 ..********  *************. .

40. spacer 1.11|1987788|30|NZ_AP019695|PILER-CR,CRISPRCasFinder,CRT matches to NC_014172 (Bacillus thuringiensis BMB171 plasmid pBMB171, complete sequence) position: , mismatch: 9, identity: 0.7

tctcttaaaatgtttattttcttttctgca	CRISPR spacer
ctgctgaaaatgtttattttctttaccaac	Protospacer
.. ** ****************** *..

41. spacer 1.11|1987788|30|NZ_AP019695|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP053290 (Bacillus cereus strain WPySW2 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.7

tctcttaaaatgtttattttcttttctgca	CRISPR spacer
ctgctgaaaatgtttattttctttaccaac	Protospacer
.. ** ****************** *..

42. spacer 1.11|1987788|30|NZ_AP019695|PILER-CR,CRISPRCasFinder,CRT matches to NC_005707 (Bacillus cereus ATCC 10987 plasmid pBc10987, complete sequence) position: , mismatch: 9, identity: 0.7

tctcttaaaatgtttattttcttttctgca	CRISPR spacer
ctgctgaaaatgtttattttctttaccaac	Protospacer
.. ** ****************** *..

43. spacer 1.11|1987788|30|NZ_AP019695|PILER-CR,CRISPRCasFinder,CRT matches to NC_011777 (Bacillus cereus AH820 plasmid pAH820_272, complete sequence) position: , mismatch: 9, identity: 0.7

tctcttaaaatgtttattttcttttctgca	CRISPR spacer
ctgctgaaaatgtttattttctttaccaac	Protospacer
.. ** ****************** *..

44. spacer 1.11|1987788|30|NZ_AP019695|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP042928 (Bacillus cereus strain G1-1 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.7

tctcttaaaatgtttattttcttttctgca	CRISPR spacer
ctgctgaaaatgtttattttctttaccaac	Protospacer
.. ** ****************** *..

45. spacer 1.11|1987788|30|NZ_AP019695|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP040341 (Bacillus cereus strain DLOU-Tangshan plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.7

tctcttaaaatgtttattttcttttctgca	CRISPR spacer
ctgctgaaaatgtttattttctttaccaac	Protospacer
.. ** ****************** *..

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

74331 : 99851

Streptococcus_phage(68.42%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_163052626.1\|74331_75408_+	DNA cytosine methyltransferase	A0A2K9V3X0	Faecalibacterium_phage	3.1e-29	61.5
WP_163051210.1\|75607_75931_+	DUF961 family protein	A0A1S5SF38	Streptococcus_phage	1.2e-37	74.5
WP_128866512.1\|75947_76310_+	YdcP family protein	A0A1S5SF96	Streptococcus_phage	1.7e-45	75.2
WP_077746329.1\|77843_79664_+	group II intron reverse transcriptase/maturase	A0A0U4J920	Pseudomonas_phage	9.8e-28	33.6
WP_165698416.1\|79692_80391_+	hypothetical protein	A0A1S5SFB5	Streptococcus_phage	3.6e-79	70.8
WP_163052628.1\|80659_81886_+	helix-turn-helix domain-containing protein	A0A1S5SEX3	Streptococcus_phage	6.0e-138	58.4
WP_163051212.1\|81869_82004_+	DUF3789 domain-containing protein	NA	NA	NA	NA
WP_002323342.1\|82004_82226_+	hypothetical protein	A0A1S5SEY0	Streptococcus_phage	9.0e-29	87.7
WP_163051214.1\|82299_83061_+	iron-sulfur protein	NA	NA	NA	NA
WP_128866518.1\|83159_83381_+	conjugal transfer protein	NA	NA	NA	NA
WP_163051216.1\|83377_83863_+	antirestriction protein ArdA	NA	NA	NA	NA
WP_163051218.1\|83879_84383_+	antirestriction protein ArdA	A0A1S5SF25	Streptococcus_phage	3.5e-52	58.9
WP_163051220.1\|84455_84845_+	conjugal transfer protein	A0A1S5SEX7	Streptococcus_phage	4.2e-45	69.8
WP_163051222.1\|84831_87282_+	ATP-binding protein	A0A1S5SF64	Streptococcus_phage	0.0e+00	74.4
WP_163052630.1\|87344_89447_+	YtxH domain-containing protein	A0A1S5SF30	Streptococcus_phage	6.3e-180	60.1
WP_163051224.1\|89443_90454_+	peptidase P60	A0A1S5SEZ8	Streptococcus_phage	7.9e-128	67.7
WP_163051226.1\|90471_91383_+	conjugal transfer protein	A0A1S5SF22	Streptococcus_phage	1.3e-76	47.8
WP_058692343.1\|91631_92336_+	lantibiotic protection ABC transporter ATP-binding subunit	A0A2H4PQG7	Staphylococcus_phage	6.0e-58	48.4
WP_058692342.1\|92328_93087_+	lantibiotic immunity ABC transporter MutE/EpiE family permease subunit	NA	NA	NA	NA
WP_058692341.1\|93088_93841_+	lantibiotic immunity ABC transporter MutG family permease subunit	NA	NA	NA	NA
WP_118504227.1\|93854_94523_+	response regulator transcription factor	W8CYM9	Bacillus_phage	9.4e-29	34.8
WP_163052632.1\|94522_95866_+	GHKL domain-containing protein	W8CYF6	Bacillus_phage	5.7e-09	23.4
WP_163051228.1\|95956_96316_-	helix-turn-helix domain-containing protein	A0A1S5SFA6	Streptococcus_phage	3.3e-20	42.3
WP_039862748.1\|96839_97259_+	sigma-70 family RNA polymerase sigma factor	A0A1S5SEW0	Streptococcus_phage	1.5e-19	35.8
WP_002323370.1\|97262_97511_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_163052634.1\|97877_98024_+	conjugal transfer protein	NA	NA	NA	NA
WP_163051230.1\|98096_99851_+	recombinase family protein	A0A2I4R675	Erysipelothrix_phage	1.4e-185	59.7

DBSCAN-SWA_2

728960 : 741976

Streptococcus_phage(88.89%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002347245.1\|728960_729659_-	response regulator transcription factor	W8CYM9	Bacillus_phage	1.5e-32	37.1
WP_042741671.1\|729720_729945_-	hypothetical protein	NA	NA	NA	NA
WP_002347247.1\|729961_730162_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_042741672.1\|730250_731162_-	conjugal transfer protein	A0A1S5SF22	Streptococcus_phage	2.4e-83	52.6
WP_163051552.1\|731179_732187_-	peptidase P60	A0A1S5SEZ8	Streptococcus_phage	7.1e-129	66.7
WP_163051554.1\|732183_734388_-	YtxH domain-containing protein	A0A1S5SF30	Streptococcus_phage	7.1e-182	51.4
WP_163051556.1\|734387_736838_-	ATP-binding protein	A0A1S5SF64	Streptococcus_phage	0.0e+00	76.2
WP_113655970.1\|736815_737214_-	conjugal transfer protein	A0A1S5SEX7	Streptococcus_phage	1.2e-47	72.2
WP_142689839.1\|737332_737836_-	antirestriction protein ArdA	A0A1S5SF25	Streptococcus_phage	7.5e-55	60.8
WP_142689840.1\|737853_738357_-	antirestriction protein ArdA	NA	NA	NA	NA
WP_113655972.1\|738275_738572_-	conjugal transfer protein	NA	NA	NA	NA
WP_029732601.1\|738672_739146_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_074132896.1\|739366_739687_-	competence protein TfoX	NA	NA	NA	NA
WP_113655973.1\|739713_740109_-	SRPBCC family protein	NA	NA	NA	NA
WP_036744758.1\|740138_740318_-	hypothetical protein	NA	NA	NA	NA
WP_002323342.1\|740411_740633_-	hypothetical protein	A0A1S5SEY0	Streptococcus_phage	9.0e-29	87.7
WP_113655974.1\|740633_740768_-	DUF3789 domain-containing protein	NA	NA	NA	NA
WP_142689841.1\|740779_741976_-	helix-turn-helix domain-containing protein	A0A1S5SEX3	Streptococcus_phage	2.1e-148	62.8

DBSCAN-SWA_3

1131767 : 1190857

Synechococcus_phage(16.67%)

tRNA,bacteriocin,integrase,transposase

attL 1150518:1150533|attR 1194472:1194487

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_118277053.1\|1131767_1133510_-\|transposase	IS1634 family transposase	NA	NA	NA	NA
WP_118277973.1\|1135001_1135301_-\|transposase	transposase	NA	NA	NA	NA
WP_118318175.1\|1135594_1135819_-	hypothetical protein	NA	NA	NA	NA
WP_118318176.1\|1136002_1136239_-	IS66 family insertion sequence element accessory protein TnpB	NA	NA	NA	NA
WP_163051708.1\|1136232_1136568_-	hypothetical protein	NA	NA	NA	NA
WP_118318179.1\|1136980_1141750_-	hypothetical protein	NA	NA	NA	NA
WP_118278000.1\|1142136_1143537_+	hypothetical protein	NA	NA	NA	NA
WP_118277878.1\|1144444_1144957_-	hypothetical protein	NA	NA	NA	NA
WP_118277879.1\|1145062_1145575_-	hypothetical protein	NA	NA	NA	NA
WP_118277880.1\|1145616_1146534_-	1-phosphofructokinase	NA	NA	NA	NA
WP_118277881.1\|1146580_1147402_-	HAD family phosphatase	NA	NA	NA	NA
WP_118277882.1\|1147481_1148444_-	class I mannose-6-phosphate isomerase	NA	NA	NA	NA
WP_118277883.1\|1148445_1149246_-	Cof-type HAD-IIB family hydrolase	NA	NA	NA	NA
WP_118277884.1\|1149387_1149858_-	superoxide dismutase family protein	NA	NA	NA	NA
WP_163051710.1\|1149901_1150510_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_118277886.1\|1150506_1151241_-	GntR family transcriptional regulator	NA	NA	NA	NA
1150518:1150533	attL	NA	NA	NA	NA
WP_118277887.1\|1151264_1152152_-	sugar phosphate isomerase/epimerase	NA	NA	NA	NA
WP_163051712.1\|1152141_1153881_-	mannose-6-phosphate isomerase	NA	NA	NA	NA
WP_115715419.1\|1153896_1154451_-	glucose-6-phosphate isomerase	NA	NA	NA	NA
WP_163051714.1\|1154758_1155772_+	hypothetical protein	NA	NA	NA	NA
WP_118277708.1\|1155867_1156221_+	hypothetical protein	NA	NA	NA	NA
WP_163051716.1\|1156446_1157199_-	UTRA domain-containing protein	NA	NA	NA	NA
WP_115715422.1\|1157304_1157994_+	deoxyribose-phosphate aldolase	NA	NA	NA	NA
WP_115715423.1\|1157995_1158865_+	sugar nucleotide-binding protein	A0A0E3G1Z8	Synechococcus_phage	7.2e-05	22.7
WP_115715424.1\|1158868_1159513_+	SGNH/GDSL hydrolase family protein	NA	NA	NA	NA
WP_118277710.1\|1159593_1160472_+	glycogen branching protein	NA	NA	NA	NA
WP_115715426.1\|1160616_1161558_-	class I mannose-6-phosphate isomerase	NA	NA	NA	NA
WP_115715427.1\|1161665_1161992_-	hypothetical protein	NA	NA	NA	NA
WP_158572457.1\|1162201_1162699_-	hypothetical protein	NA	NA	NA	NA
WP_118277712.1\|1162915_1163227_-	hypothetical protein	NA	NA	NA	NA
WP_118277713.1\|1163354_1164185_-	PTS system mannose/fructose/sorbose family transporter subunit IID	NA	NA	NA	NA
WP_118277714.1\|1164186_1165020_-	PTS sugar transporter subunit IIC	NA	NA	NA	NA
WP_115715432.1\|1165086_1165578_-	PTS sugar transporter subunit IIB	NA	NA	NA	NA
WP_118277715.1\|1165626_1166061_-	PTS fructose transporter subunit IIA	NA	NA	NA	NA
WP_115715434.1\|1166502_1167045_-	hypothetical protein	NA	NA	NA	NA
WP_115715435.1\|1167114_1167735_-	hypothetical protein	NA	NA	NA	NA
WP_118277716.1\|1167781_1169572_-	aminopeptidase P family protein	A0A0P0I8D7	Acinetobacter_phage	4.2e-116	38.1
WP_118277717.1\|1169632_1170082_-	PaaI family thioesterase	NA	NA	NA	NA
WP_115715438.1\|1170143_1171607_-\|tRNA	glutamate--tRNA ligase	NA	NA	NA	NA
WP_118277718.1\|1172114_1173737_+	polysaccharide biosynthesis protein	NA	NA	NA	NA
WP_118278054.1\|1173804_1174704_-	ROK family protein	NA	NA	NA	NA
WP_118278053.1\|1174966_1175560_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_163051718.1\|1175660_1176893_-	MFS transporter	NA	NA	NA	NA
WP_115715443.1\|1176963_1177254_-	DUF2087 domain-containing protein	NA	NA	NA	NA
WP_115715444.1\|1177683_1177851_-	hypothetical protein	NA	NA	NA	NA
WP_115715445.1\|1178083_1178722_-\|bacteriocin	putative bacteriocin export ABC transporter	G9BWD6	Planktothrix_phage	2.9e-19	34.4
WP_163051720.1\|1178722_1180864_-	hypothetical protein	NA	NA	NA	NA
WP_115714908.1\|1180957_1181293_+	hypothetical protein	NA	NA	NA	NA
WP_115714909.1\|1181286_1181643_+	IS66 family insertion sequence element accessory protein TnpB	NA	NA	NA	NA
WP_115714910.1\|1181712_1183299_+\|transposase	IS66 family transposase	S5VTP8	Leptospira_phage	2.2e-23	38.0
WP_118277591.1\|1183856_1185395_+\|transposase	IS21 family transposase	NA	NA	NA	NA
WP_118277592.1\|1185391_1186129_+	ATP-binding protein	K4HZD4	Acidithiobacillus_phage	4.5e-40	35.0
WP_163051722.1\|1186490_1187819_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_118277344.1\|1188005_1188197_-	ATP-binding cassette domain-containing protein	NA	NA	NA	NA
WP_163051724.1\|1188552_1189476_-	tetratricopeptide repeat protein	NA	NA	NA	NA
WP_015536407.1\|1189663_1190857_-\|integrase	site-specific integrase	A0A1S5SEW7	Streptococcus_phage	3.9e-142	64.1
1194472:1194487	attR	NA	NA	NA	NA

DBSCAN-SWA_4

1363350 : 1385039

Streptococcus_phage(94.44%)

integrase

attL 1363322:1363339|attR 1388858:1388875

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1363322:1363339	attL	NA	NA	NA	NA
WP_163051819.1\|1363350_1364568_-\|integrase	tyrosine-type recombinase/integrase	A0A1S5SEW7	Streptococcus_phage	1.2e-231	99.5
WP_000814511.1\|1364649_1364853_-	excisionase	A0A1S5SF07	Streptococcus_phage	4.0e-31	100.0
WP_000857133.1\|1365313_1365544_-	helix-turn-helix domain-containing protein	A0A1S5SEX1	Streptococcus_phage	2.7e-36	100.0
WP_000804885.1\|1365540_1365963_-	sigma-70 family RNA polymerase sigma factor	A0A1S5SEW0	Streptococcus_phage	2.5e-72	100.0
WP_001227347.1\|1366467_1366821_+	helix-turn-helix domain-containing protein	A0A1S5SFA6	Streptococcus_phage	1.3e-58	100.0
WP_000336323.1\|1366880_1367048_-	conjugal transfer protein	D0R0F6	Streptococcus_phage	1.6e-14	68.0
WP_000691736.1\|1367166_1369086_-	tetracycline resistance ribosomal protection protein Tet(M)	A0A1S5SF82	Streptococcus_phage	0.0e+00	99.5
WP_001814923.1\|1369101_1369218_-	tetracycline resistance determinant leader peptide	NA	NA	NA	NA
WP_001224318.1\|1369462_1370395_-	conjugal transfer protein	A0A1S5SF22	Streptococcus_phage	3.1e-171	99.4
WP_000769868.1\|1370391_1371393_-	peptidase P60	A0A1S5SEZ8	Streptococcus_phage	5.0e-191	100.0
WP_000804748.1\|1371389_1373567_-	membrane protein	A0A1S5SF30	Streptococcus_phage	0.0e+00	100.0
WP_000331160.1\|1373569_1376017_-	ATP-binding protein	A0A1S5SF64	Streptococcus_phage	0.0e+00	100.0
WP_000506270.1\|1376000_1376507_-	conjugal transfer protein	A0A1S5SEX7	Streptococcus_phage	8.6e-91	100.0
WP_000342539.1\|1376481_1376979_-	antirestriction protein ArdA	A0A1S5SF25	Streptococcus_phage	1.7e-91	100.0
WP_001009056.1\|1377095_1377317_-	hypothetical protein	A0A1S5SEY0	Streptococcus_phage	4.3e-31	100.0
WP_000398284.1\|1377359_1378565_-	replication initiation factor	A0A1S5SEX3	Streptococcus_phage	2.8e-233	100.0
WP_022618694.1\|1378805_1379210_-	hypothetical protein	NA	NA	NA	NA
WP_165698418.1\|1379220_1379901_-	hypothetical protein	A0A1S5SFB5	Streptococcus_phage	3.8e-78	69.3
WP_077746329.1\|1379929_1381750_-	group II intron reverse transcriptase/maturase	A0A0U4J920	Pseudomonas_phage	9.8e-28	33.6
WP_131214726.1\|1383376_1383907_-	hypothetical protein	NA	NA	NA	NA
WP_147360252.1\|1384142_1384568_-	hypothetical protein	NA	NA	NA	NA
WP_077727547.1\|1384655_1385039_-	YdcP family protein	A0A1S5SF96	Streptococcus_phage	3.1e-32	63.2
1388858:1388875	attR	NA	NA	NA	NA

DBSCAN-SWA_5

1583504 : 1610182

Clostridium_phage(25.0%)

tail,terminase,portal,capsid,plate

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_163051991.1\|1583504_1584632_-	aminotransferase class V-fold PLP-dependent enzyme	A0A2K9L2Y3	Tupanvirus	1.8e-27	26.3
WP_163051992.1\|1584719_1585508_-	EF2563 family selenium-dependent molybdenum hydroxylase system protein	NA	NA	NA	NA
WP_163051993.1\|1585504_1586092_-	sulfurtransferase-like selenium metabolism protein YedF	NA	NA	NA	NA
WP_115716434.1\|1586088_1586298_-	helix-turn-helix transcriptional regulator	A0A2K9V4D5	Faecalibacterium_phage	6.6e-13	57.4
WP_115716435.1\|1586378_1587134_-	DNA adenine methylase	A0A2H4IYF4	uncultured_Caudovirales_phage	5.0e-79	57.7
WP_163051994.1\|1587228_1588188_-	N-acetylmuramoyl-L-alanine amidase	D6QWL5	uncultured_phage	5.3e-57	57.8
WP_163051995.1\|1588189_1588522_-	hypothetical protein	NA	NA	NA	NA
WP_163051996.1\|1588610_1589759_-	RNA-dependent DNA polymerase	H7BVN7	unidentified_phage	6.7e-99	48.9
WP_115716441.1\|1590466_1590964_-	diversity-generating retroelement protein Avd	NA	NA	NA	NA
WP_163051997.1\|1591096_1592176_-	SUMF1/EgtB/PvdO family nonheme iron enzyme	H7BVP1	unidentified_phage	1.7e-83	49.2
WP_163051998.1\|1592175_1592505_-	hypothetical protein	A0A0N7ACI4	Bacillus_phage	6.7e-20	46.4
WP_163051999.1\|1592504_1593005_-	hypothetical protein	A0A2K9V2S0	Faecalibacterium_phage	4.1e-21	37.2
WP_163052000.1\|1593005_1593314_-	hypothetical protein	NA	NA	NA	NA
WP_163052001.1\|1593326_1594211_-	DUF2313 domain-containing protein	NA	NA	NA	NA
WP_163052002.1\|1594200_1595301_-\|plate	baseplate J/gp47 family protein	A0A2H4J4A0	uncultured_Caudovirales_phage	8.2e-46	34.8
WP_163052003.1\|1595300_1595756_-	DUF2634 domain-containing protein	A0A0N7ACH4	Bacillus_phage	7.3e-17	32.6
WP_163052004.1\|1595752_1596106_-	hypothetical protein	NA	NA	NA	NA
WP_163052005.1\|1596119_1597079_-	hypothetical protein	A0A2H4IZP4	uncultured_Caudovirales_phage	2.2e-15	27.5
WP_163052006.1\|1597078_1597777_-	LysM peptidoglycan-binding domain-containing protein	J9QE19	Clostridium_phage	1.3e-09	25.5
WP_163052007.1\|1597791_1600620_-	hypothetical protein	A0A0K2SUF9	Clostridium_phage	1.8e-52	52.9
WP_163052008.1\|1600791_1601226_-	hypothetical protein	NA	NA	NA	NA
WP_163052658.1\|1601239_1601677_-\|terminase	terminase	A0A0K2SUB8	Clostridium_phage	1.6e-29	48.2
WP_163052009.1\|1601689_1602745_-\|tail	phage tail sheath protein	A0A0A8WJR2	Clostridium_phage	4.1e-63	40.8
WP_163052010.1\|1602763_1603195_-	hypothetical protein	NA	NA	NA	NA
WP_115716457.1\|1603191_1603593_-	HK97 gp10 family phage protein	S5MNW5	Brevibacillus_phage	8.7e-14	35.7
WP_163052011.1\|1603589_1603952_-	hypothetical protein	A0A1V0DZW2	Clostridioides_phage	7.9e-06	31.0
WP_163052012.1\|1603938_1604331_-	translation initiation factor 2	NA	NA	NA	NA
WP_115716459.1\|1604266_1604533_-	hypothetical protein	NA	NA	NA	NA
WP_163052013.1\|1604534_1605419_-	hypothetical protein	NA	NA	NA	NA
WP_115716461.1\|1605433_1606060_-	DUF4355 domain-containing protein	NA	NA	NA	NA
WP_163052014.1\|1606102_1607122_-\|capsid	minor capsid protein	H7BWE7	unidentified_phage	2.4e-39	30.9
WP_163052015.1\|1607114_1608473_-\|portal	phage portal protein	I1TJV4	Clostridium_phage	7.0e-71	37.2
WP_163052660.1\|1608484_1610182_-\|terminase	phage terminase large subunit	A0A2H4JE58	uncultured_Caudovirales_phage	3.1e-193	61.6

DBSCAN-SWA_6

2097128 : 2110051

Staphylococcus_phage(42.86%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_163052233.1\|2097128_2100332_-	DEAD/DEAH box helicase	A0A0N7D8L3	Dasychira_pudibunda_nucleopolyhedrovirus	1.4e-42	29.3
WP_115716301.1\|2100486_2101344_+	hypothetical protein	NA	NA	NA	NA
WP_115716300.1\|2101340_2101652_+	hypothetical protein	NA	NA	NA	NA
WP_118277557.1\|2101776_2101932_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_008690020.1\|2102292_2103393_+	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	A0A1V0SE20	Indivirus	4.3e-47	37.8
WP_008394622.1\|2103377_2104013_+	riboflavin synthase	A0A2H4PQS5	Staphylococcus_phage	9.9e-44	46.0
WP_008394621.1\|2104032_2105238_+	bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II	A0A2H4PQS2	Staphylococcus_phage	1.4e-102	47.7
WP_008394619.1\|2105238_2105706_+	6,7-dimethyl-8-ribityllumazine synthase	A0A2H4PQS3	Staphylococcus_phage	8.3e-40	53.0
WP_008394618.1\|2106114_2107329_+	replication initiation factor	A0A1S5SEX3	Streptococcus_phage	3.2e-128	55.1
WP_008787514.1\|2107834_2108023_-	hypothetical protein	NA	NA	NA	NA
WP_163052234.1\|2108113_2108326_+\|tRNA	tRNA wybutosine-synthesizing protein 3-like protein	NA	NA	NA	NA
WP_008394611.1\|2108437_2110051_+	DUF4368 domain-containing protein	W8CYE4	Bacillus_phage	1.1e-22	25.1

DBSCAN-SWA_7

2322612 : 2342839

Streptococcus_phage(73.33%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_011860770.1\|2322612_2322939_+	YdcP family protein	A0A1S5SF38	Streptococcus_phage	5.6e-35	66.7
WP_042741546.1\|2322953_2323337_+	YdcP family protein	A0A1S5SF96	Streptococcus_phage	2.4e-37	64.6
WP_077746329.1\|2324869_2326690_+	group II intron reverse transcriptase/maturase	A0A0U4J920	Pseudomonas_phage	9.8e-28	33.6
WP_165698419.1\|2326718_2327390_+	hypothetical protein	A0A1S5SFB5	Streptococcus_phage	1.2e-79	70.3
WP_011860767.1\|2327401_2327800_+\|transposase	transposase	NA	NA	NA	NA
WP_113655958.1\|2328060_2329251_+	XRE family transcriptional regulator	A0A1S5SEX3	Streptococcus_phage	5.1e-142	61.4
WP_011860765.1\|2329262_2329397_+	DUF3789 domain-containing protein	NA	NA	NA	NA
WP_002317729.1\|2329397_2329619_+	hypothetical protein	A0A1S5SEY0	Streptococcus_phage	1.2e-28	86.3
WP_011860764.1\|2329694_2329991_+	conjugal transfer protein	NA	NA	NA	NA
WP_011860763.1\|2329909_2330413_+	antirestriction protein	NA	NA	NA	NA
WP_011860762.1\|2330430_2330934_+	antirestriction protein ArdA	A0A1S5SF25	Streptococcus_phage	6.4e-54	60.2
WP_004843362.1\|2331047_2331446_+	conjugal transfer protein	A0A1S5SEX7	Streptococcus_phage	3.2e-48	73.0
WP_011860761.1\|2331423_2333874_+	ATP-binding protein	A0A1S5SF64	Streptococcus_phage	0.0e+00	75.8
WP_011860760.1\|2333873_2336081_+	MFS transporter	A0A1S5SF30	Streptococcus_phage	1.3e-188	60.8
WP_011860759.1\|2336077_2337085_+	peptidase P60	A0A1S5SEZ8	Streptococcus_phage	2.5e-134	69.6
WP_011860758.1\|2337100_2338012_+	conjugal transfer protein	A0A1S5SF22	Streptococcus_phage	4.5e-82	52.1
WP_003063668.1\|2338099_2338300_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_011860757.1\|2338317_2338542_+	hypothetical protein	NA	NA	NA	NA
WP_011860756.1\|2338572_2339265_+	response regulator transcription factor	W8CYM9	Bacillus_phage	2.2e-33	36.9
WP_161792808.1\|2339261_2340176_+	HAMP domain-containing histidine kinase	NA	NA	NA	NA
WP_011860754.1\|2340245_2341172_+	ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	6.9e-46	44.2
WP_011860753.1\|2341164_2341896_+	ABC transporter permease	NA	NA	NA	NA
WP_011860752.1\|2342068_2342839_+	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	3.4e-30	36.5

DBSCAN-SWA_8

2466715 : 2474629

Enterobacteria_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_163052354.1\|2466715_2467822_+	UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing)	A0A1V0SAG5	Catovirus	2.3e-27	30.0
WP_163052355.1\|2467808_2468852_+	polysaccharide biosynthesis protein	A0A1V0SAI8	Catovirus	1.9e-36	36.3
WP_163052356.1\|2468851_2470051_+	NAD-dependent epimerase/dehydratase family protein	NA	NA	NA	NA
WP_163052357.1\|2470053_2471238_+	UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing)	A0A1V0SJE0	Klosneuvirus	6.9e-107	52.7
WP_163052358.1\|2471392_2471977_+	hypothetical protein	NA	NA	NA	NA
WP_163052359.1\|2472130_2473021_+	glucose-1-phosphate thymidylyltransferase RfbA	I7I009	Enterobacteria_phage	2.9e-102	62.2
WP_163052360.1\|2473024_2473600_+	dTDP-4-dehydrorhamnose 3,5-epimerase	I7HJC4	Enterobacteria_phage	6.4e-42	48.4
WP_163052361.1\|2473600_2474629_+	dTDP-glucose 4,6-dehydratase	I7HTA3	Enterobacteria_phage	1.4e-79	45.3

DBSCAN-SWA_9

2562532 : 2576184

Streptococcus_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002323337.1\|2562532_2562859_+	YdcP family protein	A0A1S5SF38	Streptococcus_phage	2.4e-25	52.4
WP_002323338.1\|2562874_2563264_+	YdcP family protein	A0A1S5SF96	Streptococcus_phage	9.0e-32	55.1
WP_002322983.1\|2563333_2563750_+	DUF523 domain-containing protein	NA	NA	NA	NA
WP_163052379.1\|2563823_2565218_+	ATP-binding protein	A0A1S5SFB5	Streptococcus_phage	1.8e-178	66.4
WP_163052380.1\|2565400_2566597_+	helix-turn-helix domain-containing protein	A0A1S5SEX3	Streptococcus_phage	5.2e-147	61.8
WP_005338118.1\|2566609_2566753_+	DUF3789 domain-containing protein	NA	NA	NA	NA
WP_002323342.1\|2566753_2566975_+	hypothetical protein	A0A1S5SEY0	Streptococcus_phage	9.0e-29	87.7
WP_002347257.1\|2567061_2567304_+	DUF3781 domain-containing protein	NA	NA	NA	NA
WP_163052381.1\|2567300_2567771_+	AraC family transcriptional regulator	NA	NA	NA	NA
WP_005338102.1\|2567858_2568155_+	hypothetical protein	NA	NA	NA	NA
WP_044911833.1\|2568073_2568577_+	antirestriction protein	NA	NA	NA	NA
WP_002323345.1\|2568594_2569098_+	antirestriction protein ArdA	A0A1S5SF25	Streptococcus_phage	7.5e-55	60.8
WP_003865505.1\|2569206_2569605_+	conjugal transfer protein	A0A1S5SEX7	Streptococcus_phage	4.1e-48	74.0
WP_002323346.1\|2569582_2572033_+	ATP-binding protein	A0A1S5SF64	Streptococcus_phage	0.0e+00	76.1
WP_163052382.1\|2572032_2574243_+	YtxH domain-containing protein	A0A1S5SF30	Streptococcus_phage	2.4e-177	58.2
WP_163052383.1\|2574239_2575247_+	peptidase P60	A0A1S5SEZ8	Streptococcus_phage	9.2e-129	67.0
WP_002323349.1\|2575263_2576184_+	conjugal transfer protein	A0A1S5SF22	Streptococcus_phage	2.7e-82	52.0

DBSCAN-SWA_10

2773927 : 2819590

Streptococcus_phage(20.0%)

terminase,portal,protease,head,integrase,transposase

attL 2798426:2798442|attR 2818733:2818749

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_115716370.1\|2773927_2775421_+\|transposase	IS1182 family transposase	A0A1X9I5T2	Streptococcus_phage	1.9e-106	45.9
WP_158572298.1\|2775711_2775852_+	hypothetical protein	NA	NA	NA	NA
WP_118277862.1\|2775969_2777280_-	MATE family efflux transporter	NA	NA	NA	NA
WP_115715607.1\|2777342_2777867_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_163052473.1\|2777959_2779276_+	AAA family ATPase	G3MBE0	Bacillus_virus	4.1e-92	44.1
WP_163052475.1\|2779346_2780141_+	Cof-type HAD-IIB family hydrolase	NA	NA	NA	NA
WP_163052476.1\|2780192_2781143_+	L-lactate dehydrogenase	NA	NA	NA	NA
WP_163052478.1\|2781190_2782126_+	N(4)-(beta-N-acetylglucosaminyl)-L-asparaginase	NA	NA	NA	NA
WP_163052480.1\|2782151_2782652_-	nitroreductase family protein	NA	NA	NA	NA
WP_163052482.1\|2782716_2784093_-	polysaccharide deacetylase family protein	NA	NA	NA	NA
WP_118277868.1\|2784229_2785300_-	AI-2E family transporter	NA	NA	NA	NA
WP_163052484.1\|2785355_2786150_-	hypothetical protein	NA	NA	NA	NA
WP_118361366.1\|2786149_2786779_-	HAD family phosphatase	NA	NA	NA	NA
WP_163052486.1\|2786875_2788660_-	DUF885 family protein	NA	NA	NA	NA
WP_163052488.1\|2788893_2791473_+	GTP-binding protein	D0R0F5	Streptococcus_phage	6.8e-67	31.2
WP_115715595.1\|2791590_2792313_+	TIGR01906 family membrane protein	NA	NA	NA	NA
WP_118361372.1\|2792302_2792869_+	septum formation protein Maf	NA	NA	NA	NA
WP_163052490.1\|2793118_2794372_+\|integrase	tyrosine-type recombinase/integrase	A0A1B2AQ00	Phage_Wrath	1.5e-35	31.0
WP_163052492.1\|2794686_2796303_-	SIR2 family protein	A0A1S5SA14	Streptococcus_phage	6.2e-42	30.9
WP_163052494.1\|2796640_2796835_+	hypothetical protein	NA	NA	NA	NA
WP_163052496.1\|2796831_2797206_-	helix-turn-helix domain-containing protein	A0A2K9V305	Faecalibacterium_phage	1.3e-11	33.3
WP_163052498.1\|2797317_2797467_+	hypothetical protein	NA	NA	NA	NA
WP_163052500.1\|2797499_2797730_+	hypothetical protein	NA	NA	NA	NA
WP_163052502.1\|2797726_2798026_-	lactate permease	NA	NA	NA	NA
WP_163052504.1\|2798210_2798414_+	hypothetical protein	NA	NA	NA	NA
2798426:2798442	attL	NA	NA	NA	NA
WP_163052506.1\|2798440_2798626_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_163052508.1\|2799411_2799729_-	hypothetical protein	NA	NA	NA	NA
WP_163052510.1\|2799851_2800094_+	hypothetical protein	NA	NA	NA	NA
WP_163052512.1\|2800357_2800639_+	hypothetical protein	NA	NA	NA	NA
WP_163052514.1\|2800822_2801686_+	hypothetical protein	H7BVD5	unidentified_phage	4.4e-63	46.0
WP_163052516.1\|2801682_2802570_+\|integrase	tyrosine-type recombinase/integrase	A0A0H4TI16	Erysipelothrix_phage	1.7e-30	33.6
WP_163052518.1\|2802768_2802954_+	hypothetical protein	NA	NA	NA	NA
WP_163052520.1\|2802956_2803385_+	hypothetical protein	NA	NA	NA	NA
WP_163052521.1\|2803393_2804698_+	hypothetical protein	A0A0E3D9Q2	Bacillus_phage	1.8e-15	35.0
WP_163052523.1\|2804848_2805433_+	hypothetical protein	NA	NA	NA	NA
WP_163052525.1\|2805436_2805652_+	hypothetical protein	NA	NA	NA	NA
WP_163052527.1\|2805770_2805971_+	hypothetical protein	NA	NA	NA	NA
WP_163052529.1\|2805984_2806203_+	hypothetical protein	NA	NA	NA	NA
WP_163052531.1\|2806609_2806753_+	hypothetical protein	NA	NA	NA	NA
WP_163052533.1\|2806749_2806986_+	hypothetical protein	NA	NA	NA	NA
WP_163052535.1\|2806995_2807442_+	hypothetical protein	NA	NA	NA	NA
WP_163052536.1\|2807463_2807790_+	hypothetical protein	NA	NA	NA	NA
WP_163052539.1\|2807928_2808222_+	hypothetical protein	NA	NA	NA	NA
WP_163052541.1\|2808222_2808528_+	hypothetical protein	NA	NA	NA	NA
WP_163052543.1\|2808524_2809565_+	endolysin	A0A2K5B2A3	Erysipelothrix_phage	1.0e-21	33.2
WP_163052545.1\|2809577_2810069_+	hypothetical protein	A0A0A7RTX1	Clostridium_phage	3.1e-21	37.8
WP_163052547.1\|2810081_2814146_+	hypothetical protein	H7BUZ2	unidentified_phage	2.7e-09	22.2
WP_163052549.1\|2814142_2814403_+	hypothetical protein	NA	NA	NA	NA
WP_163052551.1\|2814406_2814760_+	hypothetical protein	NA	NA	NA	NA
WP_163052553.1\|2814747_2815419_+	HNH endonuclease	A0A1W6JQ75	Staphylococcus_phage	4.6e-07	28.7
WP_163052555.1\|2815553_2815859_+	hypothetical protein	NA	NA	NA	NA
WP_163052556.1\|2815927_2817511_+\|terminase	terminase large subunit	A0A0P0IJU3	Lactobacillus_phage	8.7e-57	30.1
WP_163052558.1\|2817515_2818751_+\|portal	phage portal protein	NA	NA	NA	NA
2818733:2818749	attR	NA	NA	NA	NA
WP_163052560.1\|2818740_2818938_+	hypothetical protein	NA	NA	NA	NA
WP_163052562.1\|2818927_2819590_+\|head,protease	HK97 family phage prohead protease	A0A218M8W3	Mycobacterium_phage	2.2e-09	28.4

DBSCAN-SWA_11

2827590 : 2835551

Clostridium_phage(28.57%)

tail,integrase

attL 2830926:2830942|attR 2833011:2833027

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_163052580.1\|2827590_2828442_+\|tail	phage tail family protein	E2ELJ6	Clostridium_phage	1.8e-24	30.8
WP_163052582.1\|2828443_2829487_+	hypothetical protein	A0A2I7SBZ4	Paenibacillus_phage	2.8e-35	29.2
WP_163052584.1\|2829499_2830120_+	hypothetical protein	A0A0C5ABC3	Paenibacillus_phage	2.4e-18	31.4
WP_163052586.1\|2830147_2830879_+	Rha family transcriptional regulator	E9LUL6	Lactobacillus_phage	1.0e-28	34.4
WP_163052588.1\|2830912_2831143_-	hypothetical protein	NA	NA	NA	NA
2830926:2830942	attL	NA	NA	NA	NA
WP_163052590.1\|2831553_2831763_+	hypothetical protein	NA	NA	NA	NA
WP_163052591.1\|2832053_2832407_+	hypothetical protein	NA	NA	NA	NA
WP_118361378.1\|2832467_2832965_+\|integrase	tyrosine-type recombinase/integrase	A0A0A8WF08	Clostridium_phage	4.9e-06	28.8
WP_118361380.1\|2833056_2833485_-	hypothetical protein	Q331Y2	Clostridium_botulinum_C_phage	2.4e-25	45.8
2833011:2833027	attR	NA	NA	NA	NA
WP_163052592.1\|2833496_2833649_-	hypothetical protein	NA	NA	NA	NA
WP_163052593.1\|2834522_2835551_+	hypothetical protein	F0PIJ7	Enterococcus_phage	5.5e-44	43.1

DBSCAN-SWA_12

2892433 : 2916451

Streptococcus_phage(85.0%)