CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_AP022378	Citrobacter portucalensis strain IOMTU157	4 crisprs	csa3,WYL,cas3,PD-DExK,DEDDh,DinG	0	2	8	0
NZ_AP023051	Citrobacter portucalensis strain IOMTU157 plasmid pIOMTU157, complete sequence	0 crisprs	DEDDh	0	0	1	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_AP022378_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_AP022378_1

303572-303650

Orphan

Consensus_repeat	Method
TTAAAATCAGTATCAAATGATTT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_AP022378_1

>merge|NZ_AP022378|1|303572-303650|CRISPRCasFinder
TTAAAATCAGTATCAAATGATTTTATTTTTGCGCGAACGCGCGGTATCAAATGATTTTCAAATCAGTATCAAATGATTT

>NZ_AP022378|1|1|303572-303650|CRISPRCasFinder
TTAAAATCAGTATCAAATGATTT	TATTTTTGCGCGAACGCGCGGTATCAAATGATT
TTCAAATCAGTATCAAATGATTT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_AP022378.1\|WP_003827481.1\|304991_306017_-\|alcohol-dehydrogenase-catalytic-domain-containing-protein	unknown	unknown	gnl\|CDD\|176222
NZ_AP022378.1\|WP_003827479.1\|303789_304971_-\|mannonate-dehydratase	unknown	unknown	gnl\|CDD\|235172
NZ_AP022378.1\|WP_164562413.1\|299868_300945_+\|baseplate-J/gp47-family-protein	unknown	unknown	gnl\|CDD\|377414
NZ_AP022378.1\|WP_164562414.1\|300929_301505_+\|DUF2313-domain-containing-protein	unknown	unknown	gnl\|CDD\|226301
NZ_AP022378.1\|WP_003827492.1\|314081_314657_+\|glycerol-3-phosphate-responsive-antiterminator	unknown	unknown	gnl\|CDD\|377296
NZ_AP022378.1\|WP_164562412.1\|299426_299879_+\|phage-GP46-family-protein	unknown	unknown	gnl\|CDD\|377830
NZ_AP022378.1\|WP_164562408.1\|294738_296526_+\|phage-tail-tape-measure-protein	unknown	unknown	gnl\|CDD\|378413
NZ_AP022378.1\|WP_003827487.1\|309308_310853_+\|glycerol-kinase	unknown	unknown	gnl\|CDD\|198361
NZ_AP022378.1\|WP_164562410.1\|297793_298897_+\|phage-tail-protein	unknown	unknown	gnl\|CDD\|226814
NZ_AP022378.1\|WP_003827494.1\|314673_314988_+\|antibiotic-biosynthesis-monooxygenase	unknown	unknown	gnl\|CDD\|224278
NZ_AP022378.1\|WP_164562411.1\|298887_299430_+\|phage-baseplate-assembly-protein-V	unknown	unknown	gnl\|CDD\|377729
NZ_AP022378.1\|WP_164562409.1\|296525_297794_+\|DNA-circularization-N-terminal-domain-containing-protein	unknown	unknown	gnl\|CDD\|377784
NZ_AP022378.1\|WP_164562418.1\|312525_314085_+\|FAD-binding-oxidoreductase	unknown	unknown	gnl\|CDD\|223354
NZ_AP022378.1\|WP_164562417.1\|305988_307278_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|340877
NZ_AP022378.1\|WP_003827485.1\|307836_309312_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|340929
NZ_AP022378.1\|WP_063941411.1\|310849_312529_+\|glycerol-3-phosphate-dehydrogenase/oxidase	unknown	unknown	gnl\|CDD\|223651
NZ_AP022378.1\|WP_164562419.1\|315020_316187_+\|iron-containing-alcohol-dehydrogenase	unknown	unknown	gnl\|CDD\|341472
NZ_AP022378.1\|WP_175310231.1\|301516_302401_+\|hypothetical-protein	unknown	unknown	unknown
NZ_AP022378.1\|WP_164562415.1\|302400_302808_+\|tail-fiber-assembly-protein	unknown	unknown	gnl\|CDD\|367075
NZ_AP022378.1\|WP_164562416.1\|302957_303527_+\|recombinase-family-protein	unknown	unknown	gnl\|CDD\|239737

Protein	Function_ID	Function_description	E-value
NZ_AP022378.1\|WP_003827481.1\|304991_306017_-\|alcohol-dehydrogenase-catalytic-domain-containing-protein	gnl\|CDD\|176222	cd08261, Zn_ADH7, Alcohol dehydrogenases of the MDR family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines.	9.3143e-126
NZ_AP022378.1\|WP_003827479.1\|303789_304971_-\|mannonate-dehydratase	gnl\|CDD\|235172	PRK03906, PRK03906, mannonate dehydratase; Provisional.	0
NZ_AP022378.1\|WP_164562413.1\|299868_300945_+\|baseplate-J/gp47-family-protein	gnl\|CDD\|377414	pfam04865, Baseplate_J, Baseplate J-like protein. The P2 bacteriophage J protein lies at the edge of the baseplate. This family also includes a number of bacterial homologs, which are thought to have been horizontally transferred.	2.29878e-57
NZ_AP022378.1\|WP_164562414.1\|300929_301505_+\|DUF2313-domain-containing-protein	gnl\|CDD\|226301	COG3778, COG3778, Uncharacterized protein conserved in bacteria [Function unknown].	1.92476e-31
NZ_AP022378.1\|WP_164562412.1\|299426_299879_+\|phage-GP46-family-protein	gnl\|CDD\|377830	pfam07409, GP46, Phage protein GP46. This family contains GP46 phage proteins (approximately 120 residues long).	5.0304e-39
NZ_AP022378.1\|WP_164562408.1\|294738_296526_+\|phage-tail-tape-measure-protein	gnl\|CDD\|378413	pfam10145, PhageMin_Tail, Phage-related minor tail protein. Members of this family are found in putative phage tail tape measure proteins.	1.88221e-09
NZ_AP022378.1\|WP_003827487.1\|309308_310853_+\|glycerol-kinase	gnl\|CDD\|198361	cd07786, FGGY_EcGK_like, Escherichia coli glycerol kinase-like proteins; belongs to the FGGY family of carbohydrate kinases. This subgroup is composed of mostly bacterial and archaeal glycerol kinases (GK), including the well characterized proteins from Escherichia coli (EcGK), Thermococcus kodakaraensis (TkGK), and Enterococcus casseliflavus (EnGK). GKs contain two large domains separated by a deep cleft that forms the active site. This model includes both the N-terminal domain, which adopts a ribonuclease H-like fold, and the structurally related C-terminal domain. The high affinity ATP binding site of EcGK is created only by a substrate-induced conformational change, which is initiated by protein-protein interactions through complex formation with enzyme IIAGlc (also known as IIIGlc), the glucose-specific phosphocarrier protein of the phosphotransferase system (PTS). EcGK exists in a dimer-tetramer equilibrium. IIAGlc binds to both EcGK dimer and tetramer, and inhibits the uptake and subsequent metabolism of glycerol and maltose. Another well-known allosteric regulator of EcGK is fructose 1,6-bisphosphate (FBP), which binds to the EcGK tetramer and plays an essential role in the stabilization of the inactive tetrameric form. EcGK requires Mg2+ for its enzymatic activity. Members in this subgroup belong to the FGGY family of carbohydrate kinases.	6.46028e-122
NZ_AP022378.1\|WP_164562410.1\|297793_298897_+\|phage-tail-protein	gnl\|CDD\|226814	COG4379, COG4379, Mu-like prophage tail protein gpP [General function prediction only].	1.40408e-68
NZ_AP022378.1\|WP_003827494.1\|314673_314988_+\|antibiotic-biosynthesis-monooxygenase	gnl\|CDD\|224278	COG1359, COG1359, Uncharacterized conserved protein [Function unknown].	9.48772e-13
NZ_AP022378.1\|WP_164562411.1\|298887_299430_+\|phage-baseplate-assembly-protein-V	gnl\|CDD\|377729	pfam06890, Phage_Mu_Gp45, Bacteriophage Mu Gp45 protein. This family consists of Bacteriophage Mu Gp45 related proteins from both phages and bacteria. The function of this family is unknown although it has been suggested that family members may be involved in baseplate assembly.	2.42107e-49
NZ_AP022378.1\|WP_164562409.1\|296525_297794_+\|DNA-circularization-N-terminal-domain-containing-protein	gnl\|CDD\|377784	pfam07157, DNA_circ_N, DNA circularisation protein N-terminus. This family represents the N-terminus (approximately 100 residues) of a number of phage DNA circularisation proteins.	3.29061e-29
NZ_AP022378.1\|WP_164562418.1\|312525_314085_+\|FAD-binding-oxidoreductase	gnl\|CDD\|223354	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion].	8.98566e-68
NZ_AP022378.1\|WP_164562417.1\|305988_307278_-\|MFS-transporter	gnl\|CDD\|340877	cd17319, MFS_ExuT_GudP_like, Hexuronate transporter, Glucarate transporter, and similar transporters of the Major Facilitator Superfamily. This family is composed of predominantly bacterial transporters for hexuronate (ExuT), glucarate (GudP), galactarate (GarP), and galactonate (DgoT). They mediate the uptake of these compounds into the cell. They belong to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	1.91469e-103
NZ_AP022378.1\|WP_003827485.1\|307836_309312_+\|MFS-transporter	gnl\|CDD\|340929	cd17371, MFS_MucK, Cis,cis-muconate transport protein and similar proteins of the Major Facilitator Superfamily. This subfamily is composed of Acinetobacter sp. Cis,cis-muconate transport protein (MucK), Escherichia coli putative sialic acid transporter 1, and similar proteins. MucK functions in the uptake of muconate and allows Acinetobacter calcoaceticus ADP1 (BD413) to grow on exogenous cis,cis-muconate as the sole carbon source. The MucK subfamily belongs to the Metazoan Synaptic Vesicle Glycoprotein 2 (SV2) and related small molecule transporter family (SV2-like) of the Major Facilitator Superfamily (MFS) of membrane transport proteins. MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	5.07058e-33
NZ_AP022378.1\|WP_063941411.1\|310849_312529_+\|glycerol-3-phosphate-dehydrogenase/oxidase	gnl\|CDD\|223651	COG0578, GlpA, Glycerol-3-phosphate dehydrogenase [Energy production and conversion].	7.97159e-139
NZ_AP022378.1\|WP_164562419.1\|315020_316187_+\|iron-containing-alcohol-dehydrogenase	gnl\|CDD\|341472	cd08193, HVD, 5-hydroxyvalerate dehydrogenase (HVD) catalyzes the oxidation of 5-hydroxyvalerate to 5-oxovalerate with NAD+ as cofactor. 5-hydroxyvalerate dehydrogenase (HVD) is an iron-containing (type III) NAD-dependent alcohol dehydrogenase. It plays a role in the cyclopentanol metabolism biochemical pathway. It catalyzes the oxidation of 5-hydroxyvalerate to 5-oxovalerate with NAD+ as cofactor. This cyclopentanol (cpn) degradation pathway is present in some bacteria which can use cyclopentanol as sole carbon source. In Comamonas sp. strain NCIMB 9872, this enzyme is encoded by the CpnD gene.	0
NZ_AP022378.1\|WP_003827492.1\|314081_314657_+\|glycerol-3-phosphate-responsive-antiterminator	gnl\|CDD\|377296	pfam04309, G3P_antiterm, Glycerol-3-phosphate responsive antiterminator. Intracellular glycerol is usually converted to glycerol-3-phosphate in an ATP-requiring phosphorylation reaction catalyzed by glycerol kinase (GlpK) glycerol-3-phosphate activates the antiterminator GlpP.	2.08366e-63
NZ_AP022378.1\|WP_164562415.1\|302400_302808_+\|tail-fiber-assembly-protein	gnl\|CDD\|367075	pfam02413, Caudo_TAP, Caudovirales tail fibre assembly protein, lambda gpK. This family contains bacterial and phage tail fibre assembly proteins. E.coli contains several members of this family although the function of these proteins is uncertain. Using the lambda phage members as examples, there are both gptfa and gpK tail proteins here. GpK forms part of the TTC or tail-tip complex that is located at the distal end of the tail. TTCs form the platform on which the tail-tube proteins self-assemble and are also the attachment point for fibers or receptor-binding proteins that mediate phage-adsorption to the surface of the host cell. TTC assembly starts with gpJ, which is also known as the central tail fibre and is involved in host-cell adsorption. It is the C-terminus of gpJ that interacts with the lamB receptor on host cells. A number of intermediates including gpK then interact with gpJ during tail morphogenesis.	2.68703e-10
NZ_AP022378.1\|WP_164562416.1\|302957_303527_+\|recombinase-family-protein	gnl\|CDD\|239737	cd03768, SR_ResInv, Serine Recombinase (SR) family, Resolvase and Invertase subfamily, catalytic domain; members contain a C-terminal DNA binding domain. Serine recombinases catalyze site-specific recombination of DNA molecules by a concerted, four-strand cleavage and rejoining mechanism which involves a transient phosphoserine linkage between DNA and the enzyme. They are functionally versatile and include resolvases, invertases, integrases, and transposases. Resolvases and invertases affect resolution or inversion and comprise a major phylogenic group. Resolvases (e.g. Tn3, gamma-delta, and Tn5044) normally recombine two sites in direct repeat causing deletion of the DNA between the sites. Invertases (e.g. Gin and Hin) recombine sites in inverted repeat to invert the DNA between the sites. Cointegrate resolution with gamma-delta resolvase requires the formation of a synaptosome of three resolvase dimers bound to each of two res sites on the DNA. Also included in this subfamily are some putative integrases including a sequence from bacteriophage phi-FC1.	7.47198e-45

>NZ_AP022378.1|WP_164562416.1|302957_303527_+|recombinase-family-protein
MIIGYARVSSNHQDTEMQMLALQAAGCEQIFEEKASGRNTKRRILRQVVAMLQPGDELVLWKLDRIGRDVLHALVTFQELHSRNVNIRSITDGVDLKSASGRYNFRNILSAAQYESDLNSERTLAGLAVARSKGRYGGRRPKFMDEHWAQFGAAIKSGMTHREVSQRFGVGMSTLYKKFPGSSNSTPTM
>NZ_AP022378.1|WP_164562415.1|302400_302808_+|tail-fiber-assembly-protein
MKIFYSPSLNGFLLEQTAESYSGNDLVEVTEETYIEFIKGRGNQVMRPGKSGPVWGDVTPPTHDQVLADVERQRTALLLYADTVTADWRTELALGDISDDDRIKLSAWMAYKRAVKAVIAEDAIRDGFQWPAIPA
>NZ_AP022378.1|WP_175310231.1|301516_302401_+|hypothetical-protein
MFHVDNNSAVPVMPAVKPVVSAVTSFFTEGGNGVPPTYPGPDWFNIIQSELLAVLAAAGITPDKANNVQLLAAMRALFLDTSQNGADIQDKALFLQNLGITQALALKAPLASPSFSGTPSVPTADQAEIDFRIANTAFVAQAIANLNGGAPAVLNTLKKLASAINNDANFYSTVNSALGQKASLSDFTSSKTSTSVVGNQPGGLRFMCGYITVPTDSNGNIFITLPDTFLGGVIYFEAHQCGSSYVGDNSPFVFSSYQPTSGPTSSISFAVRAATTGVPLINDSIQLMYFVRGY
>NZ_AP022378.1|WP_164562414.1|300929_301505_+|DUF2313-domain-containing-protein
MAHSVDDWLHALQQVLPRGKAWPREISADLTKFVRALARRLSQAEASGDALLSEMRPETTFLLLPDWEAYLGLPECELPNGTVEDRRAAVVEKYHRKGGLAPWQIEDVAKALGFTVTVRVVLPHHCMRDCMYPLYPARYRWLLQVDVRDMQGGRFTCMDNVMTPLLTDRARNLECVLSKYRLAGTNYEYFY
>NZ_AP022378.1|WP_164562413.1|299868_300945_+|baseplate-J/gp47-family-protein
MPYNVPTLRKIIADGERDIEIELNIPLLPPVGVEKAINVSVSSQVRDLYDHQSWIADQIIPSPKSDDQTIIDTAASEGVIRKQPTFATGPVTFTSTAALPVDTEMQTAGGIVYHVVSSSQPAAGAVTVQVQADEAGVADNLPAGEVLTLLSPLAGTDSNGIVASAGITGGADIEPIDELLDRLLFRKRNPPVGGAVHDYVLWARELPGVSRAWAFDVWHGSGTVGLAWVYDDRAIITPTAADRTAMETYLFRHADPATGNYVGKPGGTEVWPVVLTLKPVAMSIKITPDNDSSRSAVQVSLAALQKTLSPGQKLQVSSLRTAIGSSAGVTDYTLSVTADVPATTEELITIGAITWLTA
>NZ_AP022378.1|WP_164562412.1|299426_299879_+|phage-GP46-family-protein
MTIGLSWQNLLSRGDITIKHDGLSLDDGLVTLVLICLFTDARADVDDELPDGSGDPRGWPGDTFSDSPWGSKLWLLEREKLTESVRLRVEDYARLSMQPLLRAGYVRTADVSATIAAADRINFTVALTRPDKSLLTIQLSRRWEATANAV
>NZ_AP022378.1|WP_164562411.1|298887_299430_+|phage-baseplate-assembly-protein-V
MGLNPANFSRTLNQIGRRLRLLVDRAVVRIVTDSLGRQNLQVQSLADAINDDVERFQQYGFTSVPPAGSEAIILAVGGRRESLVAIAVEDKRCRPKGLAPGDVCLYHQDGQSMVILKKDGIIDIRGKTVNYTADDLFEINSAQLKFVGPSEFTEDITVKGKPFLKHIHKDGDNADTTAPL
>NZ_AP022378.1|WP_164562410.1|297793_298897_+|phage-tail-protein
MDNSQKPEAVVLTVAGQQWDGWTDMSVTSSLDAIAGEFDLTITTQWSEAAPRTIKEGLPCSVTIGADKVLNGYIDDFIPSYDAENVSIRVMGRDKTGDLVDSSVVHKSGQWKGVRIEQLAAEIAKPYGITVINETDTGEAFPSVVLEQGETGFELLDRLAKQRGVLLTSNADGNLVITRASKKRASVALVLGENILAARGRFSWRERASQYIVKGSSSAGGAAWDDQPAKVIGGRQVSIDDDEINRYRPKILVNEDSLTVGGASTRGDWYKARMMGEANTTEITVAGWRENGDTGPLWKTNLLTDIRDPIQNLDTTWLIKSVTLTEGDGGRITVLALVPPESLDLPQTQAKSSGKKAKKAKVTATWD
>NZ_AP022378.1|WP_164562409.1|296525_297794_+|DNA-circularization-N-terminal-domain-containing-protein
MATGEWESLREASFRNVTFFLVEDEGTSGRRAIPRAYPKKETGWTEDNGAVLTQQQINGKLLGKNFQKQLEALLRALNTAGPGELVHPWFGIQKVQVGKVSHRLSTEEGGIAYISFEVFEAGERLFPAPKENTSLTSLSAADAVKEALANGDYFAALDGLGDMTDTLLNDMQGLVMNLPTIPSGLTDWVDRASRFKDLAGVIIAKPGELVRQFTSLASSIRDIVSEPPWSLRVYDQLKSKWDGERAAEAATKNLPGDMTVISSSPSNGVQGIASSVPATVIAPSPALQANITDFRQMVIVTSVVAQAEAVATMDFATSTEATAAGDKLAQQLAEQAVTAVENGQRELWRTLRDLRFAVVNDVRVRGAQLPDIRQLHTTVTTTAALLAWRETGDTETREAIVSRNRLRDPSFILPSTPIEVIE
>NZ_AP022378.1|WP_164562408.1|294738_296526_+|phage-tail-tape-measure-protein
MASRLTTEILINLAGNLTAKARQYGANMSEFARRNERAMSVVKATTAAAGRGLDALGNRYTGMIAGFAGGAMLREFAQTDRRITRMGLAAEKTRAEMAQIFSGIQDSSIKFRVDDSEVISAVEKIGTVTGDIDFGVKNKDNLAASIAASGGSGESIGGLFAQFPKFQVTSEKQTLEAMDTLNKLGKEGAFELKDIAEKGVRAFSMYSAAGGKGVKGIKDVGVAMESAIDATGDRDTAATAVENLIRDLQAPKVVKELGRNGINVFGNDGKMRSLPQLMEEVAKRSGNKGAKEQNKRLVEAGFNQDSILLLSSVTTGKGAENLKRYNGVVADGSGILSDAKYAAQDFTSAMTSLNVTWKKFTNSNLAKPVQELADALNSVDQETVQRWLEIGKNITIAVGGIIAARKAFQLGKGALDILGVGKGKGIPKGVSDVFGSGVMPVYVVNMGKGGMGGSENGPDLPDVPDKKPPSIHSGLVTSTIATASEIASIVPFPESDDQKNELIRKVQENNNRSTIWNDVKDWFTTAGNDPQIANPQPWASLQPQNQPPAYPAVPQSLKGEIRVVVEGDARVKSVKMDQPGITLSAQSGVSNVEQN
>NZ_AP022378.1|WP_003827479.1|303789_304971_-|mannonate-dehydratase
MEQTWRWYGPNDPVSLSDVRQAGATGVVTALHHISNGEIWSVEEILKRKEIVEKAGLVWSVVESVPIHEDIKTHTGQYDLWISNYQQTLRNLAQCGIYTVCYNFMPVLDWTRTDLEYELPDGSKALRFDQIEFAAFELHILKRPGAEADYTADEIAQAGERFATMSEEDKARLTRNIIAGLPGAEEGYTLDQFRSHLATYQNIDKAALREHFAFFLRAIIPVAEEVGVRMAVHPDDPPRPILGLPRIVSTIEDMQWMVETVNSMANGFTMCTGSYGVRADNDLVDMIKQFGPRIYFTHLRSTQREDNPKTFHEAAHLSGDVDMYNVVKAIVEEEERRKNDGNAVLIPMRPDHGHQMLDDLKKKTNPGYSAIGRLKGLAEVRGVELAIRRAFFS
>NZ_AP022378.1|WP_003827481.1|304991_306017_-|alcohol-dehydrogenase-catalytic-domain-containing-protein
MKVKAVYINKPGEIETRWVDYPEKKDNEVLIKVDAAGICGSDIGAFRGTNPLVTYPRIIGHEVTGVVIKEGNGMPANIKEGDRVIVDPYIYCGHCYPCSVGRTNCCENLKVIGVHIDGAMQEVVAHPAHLIHKIPDDVASEMAPLAEPLTIALHALHRAKLTAGEHIAIIGAGAIGLMAALSALRYGATPILIDIVEERLQYAKSLGVPYVINPSNTQVVDAIKDITQGTMAQVVVEASGANSAIRETLDLASFAGRIAFTGWPKQETSLPTNLITFKELDLRGSRTSAGEFEEALQMLATLNINPADVVSKVVSIDEVPAAVKELDQYPERYLKINATFH
>NZ_AP022378.1|WP_164562417.1|305988_307278_-|MFS-transporter
MKRKTMGWLIVFLLFIVYMLNYMDRSALSITAPLIEKELGFNAAEMGMIFSAFFVGYALFNFIGGWASDKFGPKTVFLVAALLWSVFCGMTSLVTGLWTMLAVRVLFGMAEGPVSAAGNKIINNWISRKESATAIGIFSAGSPLGGAISGPVVGLLALSLGWRPAFGIIFLFGLAWVILWYFIASDKPSKSKHLALEERVDFENHDDIILADDGKAMPSLGYYMKQPMVWATTLAFFSYNYILFFFLTWFPSYLNHSLHLDIKEISIATVIPWVIGAIGMVLGGVCSDFIYRVTGNALLSRRLILGVCLAGAAICVGVSGTVTTISSAVGLMSVSLFLLYLTGPIYWAVIQDVVHKDKVGSVGGAMHGLANISGIIGPLVTGFIVQFSGKYDYAFYLAGAIAIVSSCLVFVFVKNKGLKENESQSCLHQ
>NZ_AP022378.1|WP_003827485.1|307836_309312_+|MFS-transporter
MSACSFSNPIKIRGVDDVIHCIDSRGKINGRAGVIWWLALGGLFLDAFSNSALSAGLNPMTRNLNLSATEVALLTSFSSWVAILFNPIGGWIADRWGRVPPLIIAKIMAVIGALLVMSSSSFSTIIIGRFFVGVSYGMDFAVAMAMLAEFTPVKLKSRLNTWQGVWYVAVCLNLALALMFYSWDVGDAIWRYSIAVTALCGLIVLFFQFRYLVESPVWLARKSRLSEAVIAMNKIYGENFILAPKTEQKPVIGQAEKGAKNVLLIFRGVYLPRTILASTVQICQSIQYFGVGWYLPVISAAMFGKNFVYATLCSLFFNVFGIVGGFLSPAIGRRLGLRRSSAIGFAVAFLVLLTLGLFSDSMPLWASLLVPALFILCHSGGPGANGKSLSSLSFRSELRAGANGVVGALGAIGAALGLFIFPVFRDLYGLQTTFLIMSAVPLFASIVCFAIPWDPTRTTIQPDNEPGAPQFESPHSSYPESMAPESNRSTK
>NZ_AP022378.1|WP_003827487.1|309308_310853_+|glycerol-kinase
MIEYEDVILAIDEGTSGTRAAVVARNSQVHCLEYQPLQVSSQRHGVVEQDADEILQATIAVCRTAIANAQRSKMRIVALAIATQRSTAVLWDAGTGKALAPAMVWQDARFTDELAQLAPYWDAKLLPLIGRPVGIRSPYLWASYHITNTSAVKKAHQAGTLVFGTVDSWLLWHLAQEKKCVTTPTNATSAGAYCLNEHQYHLPWLQALNFPASLLPSLHDDADDFGTTCEDILGISVPIRACAGDQFAGAIGLGCTERGQAFCMHGTGSFVDLMMGPTVPTLNKSCESTLTMTARRQKGRSHFSVETFVPTTGSALNWVCEKLHWFDSPEQISELAAQASDSGGVSFIPALTGLRVPHLQPQARASLNGISISTTRPQVAYAILEGIAHSVAACIRANEAATGIPAQELVVGGGLSNSDTLLQIQADVSGIPVRRMAETARASLRGAAFLAGADGLLWDSLPDACATLKTARLFEPKISHDLREQKINRWEMRIALEIDAASSFTSANQERTHS
>NZ_AP022378.1|WP_063941411.1|310849_312529_+|glycerol-3-phosphate-dehydrogenase/oxidase
MKFFPSRKPNKTRSEMYGAEPLRLHRPEQLDRLESETYDILIVGGGVTGAYAALDASLRGYRVALIEKSDFASGTSSKSSKMVHGGLRYIEQGNLGLVRHSLLERQRMRRNARHLVQRLPFLFPVLDKNGVFDKRMSSAFESLLWTYDLAGGWREGILHQKLTPAEVLSHCPTLKEEQLSGGFMYFDARVDDARLTLALVRTAAFHGATVTNHAEVIETTRDQHGKVNGAIVYADAREIRIKARVVIMATGVWLRDWNGLKKGEASPLNIRPAKGVHVAIPWMKIRNDCTVTIPVAGRSRRATITRWGNVSYLGTTDEDYQGDLNDVHCNRTELDFLLEGANSALKTDLRPEDVVGSIAGCRPLVGVAGGKTVEMKRNHEIRVSADGLITIVGGKLTTSRHMAEETIDAASKILGRKKACSTKTAYLLGAAGYDPQAILASGGLSAHLGERYGTEAHFVSDIIQADPSLMKPIVAGLPYTEAEVVYAVRHELASTVDDVLSRRIRARLMARDASAAAAERVGEILQQELRLHPEHVAKQVASYQAAIKHEKSMLMGTSE
>NZ_AP022378.1|WP_164562418.1|312525_314085_+|FAD-binding-oxidoreductase
MISKEAIKRGYNRGNYTVGAHTRPAWATDITRSGGAKGMQVDPVAISEATFDRLRVIADEVLTSEADVISWTRDWWAGSMIAETQGAPATSKGVIVRVSTVEQIQDVMRLASESAIPVTVSAGRSNVTGAALPLRGGIVLDVCELNKFIDFDPQSQIVEVEAGMFGDVFEQTIQKEYGMTMGHWPSSFGISTVGGWVACRGAGQLSTRYGKIEDMVFGMDVVLADGRLITVGGYARSAIGPDLQQMFIGSEGTLGVIVRVRLKLHRLPDYGRAIAWGFSSFASGLEACREILQHGANPAALRLYDNLESGVQFGLPETNVLLIADEGQPDMVDAVLAISERVCKQSGEELDGEAIFERWLDTRYLTGKSAEGFKKSPGLVADTLEMVGRWRDLSAVYDDVVAAINAVPGTLAGSAHQSHAYVDGACLYFSLRGDVAVEQRGAWYRAAWDAANAVLIKHNASLSHHHGVGLLRSPYMQASLGESLSVLADIKKALDPQNILNPGKLGLSAELHSHRAGQS
>NZ_AP022378.1|WP_003827492.1|314081_314657_+|glycerol-3-phosphate-responsive-antiterminator
MIKNLGVLLARHPIIMAIYGIEQLKTALSSKAEVCIIANIDLIKLQPVIELLSKAGKYVIVNIDSCNGLSQDKGGIDYVAETGAMGLLSTRLQTVQRAKKCGLVTMQKIFVTDRSTWLRSLKAVEQSEPDYVQLMPAQMLPLLPQADRNVLPPIVASGFVCNEEHAQTALLHGAIAVSSSDSALWDVNLLR
>NZ_AP022378.1|WP_003827494.1|314673_314988_+|antibiotic-biosynthesis-monooxygenase
MENTQLFVVAHYFAQPTMGDKVNDALSMLAEATRSEPENITYEFFRSTEDGDRFVIVETYRCAQGLELHRQTEHFQRIGIGIITPLLERKEVKSFHIPPDEPRR
>NZ_AP022378.1|WP_164562419.1|315020_316187_+|iron-containing-alcohol-dehydrogenase
MNHVMKDFSFTTVAEIIVEWAGAARLGEILQQRFSARRVLLVTDPGLVKAGILPPVLHSLQDAGFQVTVYDRVQPDPHEHFVREAIQVARDSHCDMVIGLGGGSSLDVAKLVAVLINSEQELPELYGIGKVIGQRLPLVNIPTTAGTGSEVTNIAILTTHDDSKMGIVSPQLYGDLVLLDAQLTLGLPPVHTAAAGIDAMVHAIEAYTGKHKKNPLSDALAREALRLISRHLVTACRDGNNREARENVLLGAMLAGQAFANSPVAAVHALAYPLGARHHIPHGLSNALMLIPVLQFNASAAAPLYGELAAVIGGKVTGDVANDARSFIAGMVKIIAATGAPNRLRDVDVPEKDLPLLAHDAMQQTRLLDNNPVTLTEDDALRLYQQAF

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Crispr_ID: NZ_AP022378_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_AP022378_2

694046-694146

Orphan

Consensus_repeat	Method
ACTCGTAGGCCTGATAAGCGAAGCGCATCAGGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_AP022378_2

>merge|NZ_AP022378|2|694046-694146|CRISPRCasFinder
ACTCGTAGGCCTGATAAGCGAAGCGCATCAGGCGGCGCAAAAGCCTTATCAGGCCTACAAAGGTTTGTACTCGTAGGCCTGATAAGCGAAGCGCATCAGGC

>NZ_AP022378|2|2|694046-694146|CRISPRCasFinder
ACTCGTAGGCCTGATAAGCGAAGCGCATCAGGC	GGCGCAAAAGCCTTATCAGGCCTACAAAGGTTTGT
ACTCGTAGGCCTGATAAGCGAAGCGCATCAGGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_AP022378.1\|WP_063941807.1\|688668_690189_+\|PAS-domain-containing-methyl-accepting-chemotaxis-protein	unknown	unknown	gnl\|CDD\|185001
NZ_AP022378.1\|WP_003828529.1\|686448_686781_+\|tRNA-binding-protein	unknown	unknown	gnl\|CDD\|182232
NZ_AP022378.1\|WP_164562464.1\|681955_685048_-\|beta-galactosidase-subunit-alpha	unknown	unknown	gnl\|CDD\|236673
NZ_AP022378.1\|WP_164562468.1\|694155_695814_-\|glycerone-kinase	unknown	unknown	gnl\|CDD\|274097
NZ_AP022378.1\|WP_003828504.1\|701554_701983_-\|heme-binding-protein	unknown	unknown	gnl\|CDD\|377163
NZ_AP022378.1\|WP_003828536.1\|681509_681959_-\|beta-galactosidase-subunit-beta	unknown	unknown	gnl\|CDD\|182302
NZ_AP022378.1\|WP_003828498.1\|704641_705070_+\|diol-dehydratase-small-subunit	unknown	unknown	gnl\|CDD\|376756
NZ_AP022378.1\|WP_032934180.1\|692842_693997_+\|cyclopropane-fatty-acyl-phospholipid-synthase	unknown	unknown	gnl\|CDD\|183282
NZ_AP022378.1\|WP_003024745.1\|696375_697473_+\|glycerol-dehydrogenase	unknown	unknown	gnl\|CDD\|181843
NZ_AP022378.1\|WP_003828512.1\|697564_699490_+\|PTS-dependent-dihydroxyacetone-kinase-operon-transcriptional-regulator-DhaR	unknown	unknown	gnl\|CDD\|183114
NZ_AP022378.1\|WP_164562467.1\|691926_692775_-\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|225117
NZ_AP022378.1\|WP_003024734.1\|700368_701532_-\|iron-containing-alcohol-dehydrogenase	unknown	unknown	gnl\|CDD\|341467
NZ_AP022378.1\|WP_003828509.1\|699467_699998_-\|cob(I)yrinic-acid-a,c-diamide-adenosyltransferase	unknown	unknown	gnl\|CDD\|376665
NZ_AP022378.1\|WP_057067552.1\|686858_688238_-\|putrescine-aminotransferase	unknown	unknown	gnl\|CDD\|183175
NZ_AP022378.1\|WP_032945068.1\|685255_686239_-\|transcriptional-regulator-EbgR	unknown	unknown	gnl\|CDD\|182389
NZ_AP022378.1\|WP_003828507.1\|699998_700352_-\|glycerol-dehydratase-reactivase-beta/small-subunit-family-protein	unknown	unknown	gnl\|CDD\|376757
NZ_AP022378.1\|WP_063941805.1\|691152_691926_+\|siderophore-interacting-protein	unknown	unknown	gnl\|CDD\|225250
NZ_AP022378.1\|WP_003828500.1\|704054_704639_+\|propanediol/glycerol-family-dehydratase-medium-subunit	unknown	unknown	gnl\|CDD\|237886
NZ_AP022378.1\|WP_164562466.1\|690242_690917_-\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224609
NZ_AP022378.1\|WP_003828502.1\|702375_704043_+\|propanediol/glycerol-family-dehydratase-large-subunit	unknown	unknown	gnl\|CDD\|376755

Protein	Function_ID	Function_description	E-value
NZ_AP022378.1\|WP_063941807.1\|688668_690189_+\|PAS-domain-containing-methyl-accepting-chemotaxis-protein	gnl\|CDD\|185001	PRK15041, PRK15041, methyl-accepting chemotaxis protein.	1.23895e-72
NZ_AP022378.1\|WP_003828529.1\|686448_686781_+\|tRNA-binding-protein	gnl\|CDD\|182232	PRK10089, PRK10089, chaperone CsaA.	1.60726e-46
NZ_AP022378.1\|WP_164562464.1\|681955_685048_-\|beta-galactosidase-subunit-alpha	gnl\|CDD\|236673	PRK10340, ebgA, cryptic beta-D-galactosidase subunit alpha; Reviewed.	0
NZ_AP022378.1\|WP_164562468.1\|694155_695814_-\|glycerone-kinase	gnl\|CDD\|274097	TIGR02361, Dihydroxyacetone_kinase_1, dihydroxyacetone kinase, ATP-dependent. This family consists of examples of the form of dihydroxyacetone kinase (also called glycerone kinase) that uses ATP (2.7.1.29) as the phosphate donor, rather than a phosphoprotein as in E. coli. This form is composed of a single chain with separable domains homologous to the K and L subunits of the E. coli enzyme, and is found in yeasts and other eukaryotes and in some bacteria, including Citrobacter freundii. The member from tomato has been shown to phosphorylate dihydroxyacetone, 3,4-dihydroxy-2-butanone, and some other aldoses and ketoses ().	0
NZ_AP022378.1\|WP_003828504.1\|701554_701983_-\|heme-binding-protein	gnl\|CDD\|377163	pfam03928, Haem_degrading, Haem-degrading. Haem_bdg is a bacterial protein that is up-regulated in response to haemin- and peroxide-based oxidative stress. It interacts with the SenS/SenR two-component signal transduction system. Iron binds to surface-exposed lysine residues of an octomeric assembly of the protein.	9.08254e-40
NZ_AP022378.1\|WP_003828536.1\|681509_681959_-\|beta-galactosidase-subunit-beta	gnl\|CDD\|182302	PRK10202, ebgC, beta-galactosidase subunit beta.	4.95079e-92
NZ_AP022378.1\|WP_003828498.1\|704641_705070_+\|diol-dehydratase-small-subunit	gnl\|CDD\|376756	pfam02287, Dehydratase_SU, Dehydratase small subunit. This family contains the small subunit of the trimeric diol dehydratases and glycerol dehydratases. These enzymes are produced by some enterobacteria in response to growth substances.	2.29163e-76
NZ_AP022378.1\|WP_032934180.1\|692842_693997_+\|cyclopropane-fatty-acyl-phospholipid-synthase	gnl\|CDD\|183282	PRK11705, PRK11705, cyclopropane fatty acyl phospholipid synthase.	0
NZ_AP022378.1\|WP_003024745.1\|696375_697473_+\|glycerol-dehydrogenase	gnl\|CDD\|181843	PRK09423, gldA, glycerol dehydrogenase; Provisional.	0
NZ_AP022378.1\|WP_003828512.1\|697564_699490_+\|PTS-dependent-dihydroxyacetone-kinase-operon-transcriptional-regulator-DhaR	gnl\|CDD\|183114	PRK11388, PRK11388, DNA-binding transcriptional regulator DhaR; Provisional.	0
NZ_AP022378.1\|WP_164562467.1\|691926_692775_-\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|225117	COG2207, AraC, AraC-type DNA-binding domain-containing proteins [Transcription].	1.13046e-26
NZ_AP022378.1\|WP_003024734.1\|700368_701532_-\|iron-containing-alcohol-dehydrogenase	gnl\|CDD\|341467	cd08188, PDDH, 1,3-Propanediol (1,3-PD) dehydrogenase. This family includes 1,3-propanediol (1,3-PD) dehydrogenase, a key enzyme in the microbial production of 1,3-PD that has been previously characterized as the product of dhaT gene in Klebsiella pneumoniae. 1,3-PD dehydrogenase is a member of the family III metal-dependent polyol dehydrogenases, which are shown to require a divalent metal ion for catalysis. However, some members of this family showed a dependence on Fe(2+) or Zn(2+) for activity.	0
NZ_AP022378.1\|WP_003828509.1\|699467_699998_-\|cob(I)yrinic-acid-a,c-diamide-adenosyltransferase	gnl\|CDD\|376665	pfam01923, Cob_adeno_trans, Cobalamin adenosyltransferase. Cobalamin adenosyltransferase This family contains the gene products of PduO and EutT which are both cobalamin adenosyltransferases. PduO is a protein with ATP:cob(I)alamin adenosyltransferase activity. The main role of this protein is the conversion of inactive cobalamins to AdoCbl for 1,2-propanediol degradation.The EutT enzyme appears to be an adenosyl transferase, converting CNB12 to AdoB12.	1.78281e-71
NZ_AP022378.1\|WP_057067552.1\|686858_688238_-\|putrescine-aminotransferase	gnl\|CDD\|183175	PRK11522, PRK11522, putrescine--2-oxoglutarate aminotransferase; Provisional.	0
NZ_AP022378.1\|WP_032945068.1\|685255_686239_-\|transcriptional-regulator-EbgR	gnl\|CDD\|182389	PRK10339, PRK10339, DNA-binding transcriptional repressor EbgR; Provisional.	0
NZ_AP022378.1\|WP_003828507.1\|699998_700352_-\|glycerol-dehydratase-reactivase-beta/small-subunit-family-protein	gnl\|CDD\|376757	pfam02288, Dehydratase_MU, Dehydratase medium subunit. This family contains the medium subunit of the trimeric diol dehydratases and glycerol dehydratases. These enzymes are produced by some enterobacteria in response to growth substances.	1.83135e-26
NZ_AP022378.1\|WP_063941805.1\|691152_691926_+\|siderophore-interacting-protein	gnl\|CDD\|225250	COG2375, ViuB, Siderophore-interacting protein [Inorganic ion transport and metabolism].	1.18551e-81
NZ_AP022378.1\|WP_003828500.1\|704054_704639_+\|propanediol/glycerol-family-dehydratase-medium-subunit	gnl\|CDD\|237886	PRK15042, pduD, propanediol/glycerol family dehydratase medium subunit.	6.5463e-117
NZ_AP022378.1\|WP_164562466.1\|690242_690917_-\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|224609	COG1695, COG1695, Predicted transcriptional regulators [Transcription].	7.26096e-28
NZ_AP022378.1\|WP_003828502.1\|702375_704043_+\|propanediol/glycerol-family-dehydratase-large-subunit	gnl\|CDD\|376755	pfam02286, Dehydratase_LU, Dehydratase large subunit. This family contains the large subunit of the trimeric diol dehydratases and glycerol dehydratases. These enzymes are produced by some enterobacteria in response to growth substances.	0

>NZ_AP022378.1|WP_032934180.1|692842_693997_+|cyclopropane-fatty-acyl-phospholipid-synthase
MNSLCSDAVIVNETNDNWTRMGKELLSQADIRINGSRAWDIQLHHTGFFKRVLQQGSLGLGESYMEGWWDCERLDILFCKILRAKLDQQMPGNLKDILRIASARLFNLQSRSRAWIVGKEHYDIGNDLFALMLDPHMQYSCGYWKDATTLDDAQNAKLKMICEKLQLKPGMRLLDIGCGWGGLAEYAARHYGVAVEGVTISKEQQKMAQQRCEGLDVNILLQDYRDLDKHYDRIVSVGMFEHVGPKNYDTYFSIADRCLKPDGLFLLHTIGSNKKGMSVDPWINKYIFPNGCLPAISHIAEASESRFVMEDWHNFGSDYDKTLMAWHERFNQAWPELSSRYSATFRRMFNYYLCACAGAFRARDIELWQVLFSRGVEGGIRVYR
>NZ_AP022378.1|WP_164562467.1|691926_692775_-|helix-turn-helix-domain-containing-protein
MIRGQDLSSSGHTIGSIDDSFMETLAQKQWNSFPDNSMTELPQDVFFRSYVLEANHHVPQHSHSFMQFHFARKGSMRIDVAGKCWIIPAHYGIWIPNNTEHAVWALDDVYLENLDIKPGFLEESINECKVVAISDFAREFIHYATNSISGHYDSQSKEGKLVSVLVDIILQLPEVALVLPWPQDRELTKVCRTIQESPALEHSVEYWAQHLGMSARTFSRHFKKETGLPFSVWKQKMRILESVLMLKKNKSVTAVALDVGYSSTAAFSYAFRQAFGVPPSNY
>NZ_AP022378.1|WP_063941805.1|691152_691926_+|siderophore-interacting-protein
MTTNTSRYPQRVRNELRFRELTVLRVERISAGFQRIVLGGDALDGFSSRGFDDHTKVFFPEPGSHFVPPVVTDEGIVWADGVRPLSRDYTPLYDETRHELALDFYIHDGGVASTWAMNAREGDKLTIGGPRGSLVVPEDYAYQVYVCDESGMPALRRRLESLCRLAVRPHVTALVSVQDAAYQDYFAHLDGFTLQWFIGHDEQAVNEHLSRLSVPADDYFIWITGEGKVVKNLSARFETEAFDQQRVRAAAYWHQRR
>NZ_AP022378.1|WP_164562466.1|690242_690917_-|helix-turn-helix-transcriptional-regulator
MMQNHHEGCCKHTEHQHEGCCKGEGHHHEGRHNEHHAGCCKGEEHRHEGCNKDHHHEHGCGHRRGGGGGRRQRFFGHGELRLVILDILTRDASHGYELIKAIETLTQGNYTPSPGVIYPTLDFLQDQALITVSDEEGGRKQIAITTQGQQWLDENREHLEHIHERIKARCVGFELRKNPQMKRALENFKAVLDLRVNHGDTSDAQIKKIIGIIDRAALDITQLD
>NZ_AP022378.1|WP_063941807.1|688668_690189_+|PAS-domain-containing-methyl-accepting-chemotaxis-protein
MSSHPYVSQQNTPLDDDITLMSTTDLQSYITHANDTFVQVSGYQLNELLDKPHNQVRHPDMPKAAFADMWYTLKQGEPWSGIVKNRRKNGDHYWVRANAVPMVREGRVTGYMSIRTRATDEEIAAVEPLYKALNEGRCNRRIHKGLVVRKGWLGKLPAMPIRWRVRSVMAFMFVLLAATLQQMGAEWPLLLMSALVMVLGTAIFEWQIVRPIENVTRQALKVATGERNSVSHLNRSDELGLMLRAVGQLGLMCRWLIHDVSSQVSCVRSDSETLAKGSDDLNKHTQQTVENVQETVTTMNQMAASVKQNSETAAAADKLSIAASSAATHGGEAMDTVIKTMDDIANSTQRIGTITTLINDIAFQTNILALNAAVEAARAGEQGKGFAVVAGEVRHLASRSASAANDIRKLIDASADKVQSGSDQVHAAGRTMDDIVAQVQNVTQLIAQISHSTLEQSDGLSSLTRAVNELSNITQKNAELVEESAQISAMVKHRAGRLEDAVTVLH
>NZ_AP022378.1|WP_057067552.1|686858_688238_-|putrescine-aminotransferase
MNRLPSSASALACSAHALNLIEKRTLDHEEMKSLNKEVIEYFKEHVNPGFLEYRKSVTAGGDYGAVEWQAGSLNTLVDTQGQEFVDCLGGFGIFNVGHRNPVVVSAVQNQLAKQPLHSQELLDPLRAMLAKTLAALAPGKLKYSFFCNSGTESVEAALKLAKAYQSPRGKFTFIATSGAFHGKSLGALSATAKSTFRKPFMPLLPGFRHVPFGDINAMRTMLSECKKTGDDVAAVILEPIQGEGGVILPPQGYLTAVRKLCDEFGALMILDEVQTGMGRTGKMFACEHENVQPDIMCLAKALGGGVMPIGATIATEEVFSVLFDNPFLHTTTFGGNPLACAAALATINVLLEQNLPAQAEQKGDMLLDGFRQLAREYPDLVHDVRGKGMLMAIEFVDNEIGYNFASEMFRQRVLVAGTLNNAKTIRIEPPLTLTIEQCDLVLRSTRKALAALRVSVEQM
>NZ_AP022378.1|WP_003828529.1|686448_686781_+|tRNA-binding-protein
MDTVAFADFARMEIRVGKIAQVKRHDNADKLYIVQVDVGERTLQTVTSLVPYYREEELMGKTVVVLCNLQKAKMRGETSECMLLCAETDDGSESVLLTPERLMPAGVRIV
>NZ_AP022378.1|WP_032945068.1|685255_686239_-|transcriptional-regulator-EbgR
MATLKDIAIEAGVSLATVSRVLNDDPTLNVKEETKHRILEIAEKLEYKTSSARKNQTSALGPQHILALYSYQQDLEINDPYYLAIRHGIETQCEKLGIELTNCYEHSGLPESKHITGILIVGKPSPALREAATALTDNICFIDFHESGSEYDAVDIDLARISKESIDFFIAQGVTRIGFIGGEDQPGKADIREAAFVEYGRLQQVVSEQDIYRGGFSSSSGYELAKEMLAKPDYPSALFVASDSIAIGVLRAIHERGLNIPQDISLISVNDIPTARFTFPPLSTVRIHSEMMGSQGVNLLFEKARDGRALPLLVFVPSKLKLRGTTR
>NZ_AP022378.1|WP_164562464.1|681955_685048_-|beta-galactosidase-subunit-alpha
MNRWENIQLTHENRLAPRAYFFSYDSVAQARSFARETSSLFQLLSGQWNFQFFEHPLLVPEAFTSQFMSDWGSITVPGMWQMEGHGKLQYTDEGFPFPIDVPYVPTNNPTGAYQRIFTLSEGWQGKQTLIKFDGVETYFEVYVNGQYVGFSKGSRLTAEFDISSVVKTGDNLLCVRVMQWADSTYVEDQDMWWSAGIFRDVYLVGKQATHIQDFTVRTEFDDDYRDATLSCDIALENLASTPAIASLEYTLFDGEKALHSGVINTLKVDKQTQTAFHFKVSAPQQWSAESPYLYHLVMTLKDASGNILEVVPQRVGFRDIKVRDGLFYINNRYVMLHGVNRHDNDHLKGRAVGMDRVEKDLLLMKQHNINSVRTAHYPNDPRFYELCDIYGLFVMAETDVESHGFANIGDISRITDDPLWENVYVERIVRHVHAQKNHPSIIIWSLGNESGYGCNIRAMYHAAKALDDTRLIHYEEDRDAEVVDIISTMYTRVPLMNEFGEYPHPKPRIICEYAHAMGNGPGGLTEYQNVFYQHDCIQGHYVWEWCDHGIQAKDDDGNVWYKYGGDYGDYPNNYNFCLDGLIYSDQTPGPGLKEYKQVIAPVKVRAQDLARGELRVENKLWFTTLDDYTLHIEVRAEGDTLSVQQIKLRDVPPNSDALLQCALPELDAREAFLNVTVTKDSRTSYSEAGHHIATYQFPLKARTAAAVPFSLQNANPLTLEDSRQSCTVRGYNFHLTFSKLTGKPIAWNVNGEELITREPKINFFKPTIDNHKQEFEGLWQPNHLQIMQEHLREFTLEQTDDALLITSQTIIAPPVFDFGMRCTYRWRIAADGQLNVELSGQPYGEYRDIIPCIGFTMGINGDLGQVAYYGRGPGENYADSQQANIIDIWRSSVDEMFENYPFPQNNGNRQDVRWAMLTNRHGNGLLVVPQRPVNLSAWRYTQENIFAAQHCNALQRSDDIILNLDHQLLGLGSNSWGSEVLDSWRVWFTSFSYGFTLLPVSGSESGAQTTAKRAFGTGFFSTNMHSENTK
>NZ_AP022378.1|WP_003828536.1|681509_681959_-|beta-galactosidase-subunit-beta
MRIIDNLEQFQQRYASGRKWQRCVEAIENIDNIQPGVAHSIGDSLSYRVETDSATDALFTGHRRYFEIHYYLQGQQKIEYAAKEDLQVVEYYRDETDREYLKGCGKTVEVHEGQMVICDNHEAYRFICNNAVKKVVLKVTIEDGYFHNK
>NZ_AP022378.1|WP_164562468.1|694155_695814_-|glycerone-kinase
MSQFFFNQRTHLVSDVIDGTIIASPWNNLARLESDPAIRIVVRRDLNKNNVAVISGGGSGHEPAHVGFIGKGMLTAAVCGDVFASPSVDAVLTAIQAVTGEAGCLLIVKNYTGDRLNFGLAAEKARRLGYNVEMLIVGDDISLPDNKHPRGIAGTILVHKIAGYFAERGYNLATVLREAQYAANNTFSLGVALSSCHLPQETDAAPRHHPGHAELGMGIHGEPGASVIDTQNSAQVVSLMVDKLLAALPETGRLAVMINNLGGVSVAEMAIIIRELASSPLHPRIDWLIGPASLVTALDMKGFSLTAIVLEESIEKALLTEVETSNWPTPVPPREISCVPSSQRSARVEFQPSANALVAGIVELVTTTLSDLETHLNALDAKVGDGDTGSTFAAGAREIASLLHRQQLPLDNLATLFALIGERLTVVMGGSSGVLMSIFFTAAGQKLEQGANVAEALNTGLAQMKFYGGADEGDRTMIDALQPALTSLLAQPKNLQAAFDAAQAGAERTCLSSKANAGRASYLSSESLLGNMDPGAHAVAMVFKALAESELG
>NZ_AP022378.1|WP_003024745.1|696375_697473_+|glycerol-dehydrogenase
MLKVIQSPAKYLQGPDASTLFGQYAKNLADSFFVIADDFVMKLAGEKVLNGLHSHDISCHAERFNGECSHVEINRLIAILKQHGCRGVVGIGGGKTLDTAKAIGYYQKLPVVVIPTIASTDAPTSALSVIYTEAGEFEEYLIYPKNPDMVVMDTAIIAKAPVRLLVAGMGDALSTWFEAKACYDARATSMAGGQSTVAALSLARLCYDTLLAEGEKARFAAQAGVVTDALERIVEANTYLSGIGFESSGLAGAHAIHNGFTILEECHHLYHGEKVAFGTLAQLVLQNSPMEEIETVLNFCQKVGLPVTLAEMGVKEDVDGKIMAVAKATCAEGETIHNMPFPVTPESVHAAILTADLLGQQWLAR
>NZ_AP022378.1|WP_003828512.1|697564_699490_+|PTS-dependent-dihydroxyacetone-kinase-operon-transcriptional-regulator-DhaR
MTAHTHSIGKEVSSVIAQSWHRCSKFMQRETWQAPHQAQGLTFESICRRKTALLTIAQAALEDAWEFMDGRPCALLILDESACILSRCGDPQTVEQLAELGFRDGSYCAESIIGSCALSLATMPGQPTKTSGDQHFKQALHPWSFCSTPVFDNHGRLFGSISLCCLVEHECVSDLSLTLAIAREVGNSLLTDSLLAESNRHLNQMYGLLESMDDGVMAWNEQGVLQFLNARAALLLHLDAQASQGKNIHDLLNLPMLLRRAIKHARGLNHVEVTFESQHQFVDAVITLKPIVEEQGNSFILLLHPVEQMRQLMTSQLGKVSHTFEQMSTDDPETRRLIHFGRQAARGSFPILLCGEEGVGKELLSQAIHNESERASGPYIAVNCQLYANSVLGQDFMGSAPTDDENGRLSRLELANGGTLFLEKIEYLAPELQSALLQVIKQGVLTRLDARRLIPVDVKVIATTTVDLANLVEQNRFSRQLYYALHSFEIVIPPLRARRNSIPSLIYTRLNSLKKRFSSSLKIDDDALAQLVAYSWPGNDFELNSIIENIAISSDNGHIRLSNLPDYLFAERPGLETASSLLPASLTFTAIEKEAIIHAARVTSGRVQEMSQLLNIGRTTLWRKMKQYDIDASQFKRKHLD
>NZ_AP022378.1|WP_003828509.1|699467_699998_-|cob(I)yrinic-acid-a,c-diamide-adenosyltransferase
MYRIYTRTGDKGTTALFGGSRIDKDDIRVEAYGTVDELISQLGVCYASTHQAELRQDLHDMQKMLFVLGAELASDEKGLARLQQRIGDEDIQALEQLIDRNMAQSGPLKEFVIPGKNLPSAQLHVARTLARRLERVLIAMSRTLTLRDEPRRYINRLSDALFSMARIEETSPDACA
>NZ_AP022378.1|WP_003828507.1|699998_700352_-|glycerol-dehydratase-reactivase-beta/small-subunit-family-protein
MSLSSPGVHLFYHSRWQDTRVLDELCWGLEEQGVPCRAICCDEHDCALALSKLAAKSSTLRVGLGLNATGDIALTHAQLPEDRALIRGHIRAGAAQLRVLGANAGQLVKVLPFSEIN
>NZ_AP022378.1|WP_003024734.1|700368_701532_-|iron-containing-alcohol-dehydrogenase
MSYRMFDYLVPNVNFFGPNAISVVGERCKLLGGKKALLVTDKGLRAIKDGAVDKTLAHLREAGIDVVVFDGVEPNPKDTNVRDGLEVFRKEHCDIIVTVGGGSPHDCGKGIGIAATHEGDLYSYAGIETLTNPLPPIVAVNTTAGTASEVTRHCVLTNTKTKVKFVIVSWRNLPSVSINDPLLMLGKPAPLTAATGMDALTHAVEAYISKDANPVTDAAAIQAIRLIARNLRQAVALGSNLKARENMAYASLLAGMAFNNANLGYVHAMAHQLGGLYDMPHGVANAVLLPHVARYNLIANPEKFADIAEFMGENTDGLSTMDAAELAIHAIARLSADIGIPQHLRDLGVKEADFPYMAEMALKDGNAFSNPRKGNEKEIAEIFRQAF
>NZ_AP022378.1|WP_003828504.1|701554_701983_-|heme-binding-protein
MNKSQQIATITLAAAKKMAQAVEAKALEINVPVVFSVVDHGGNTLLMQRMDDAFVTSCDISLNKAYTACCLRQGTHEITDAVQPGASLYGLQLTNQQRIVIFGGGLPVILNGKLIGAVGVSGGTVEQDRLLAETALNCFSEL
>NZ_AP022378.1|WP_003828502.1|702375_704043_+|propanediol/glycerol-family-dehydratase-large-subunit
MRRSKRFEVLAKRPVNQDGLIGEWPEEGLIAMESPYDPASSVKVENGRIIELDGKSRAEFDMIDRFIADYAINVAEAERAMQLDALEIARMLVDIHVSREEIIAITTAITPAKAVEVMAQMNVVEMMMALQKMRARRTPSNQCHVTNLKDNPVQIAADAAEAGIRGFSEQETTVGIARYAPFNALALLVGSQCGRPGVLTQCSVEEATELELGMRGLTSYAETVSVYGTESVFTDGDDTPWSKAFLASAYASRGLKMRYTSGTGSEALMGYSESKSMLYLESRCIFITKGAGVQGLQNGAVSCIGMTGAVPSGIRAVLAENLIASMLDLEVASANDQTFSHSDIRRTARTLMQMLPGTDFIFSGYSAVPNYDNMFAGSNFDAEDFDDYNILQRDLMVDGGLRPVTEEETIAIRNKAARAIQAVFRELGLPLISDEEVEAATYAHGSKDMPARNVVEDLAAVEEMMKRNITGLDIVGALSCSGFEDIASNILNMLRQRVTGDYLQTSAILDRQFDVVSAVNDINDYQGPGTGYRISAERWAEIKNIAGVVQPGSIE
>NZ_AP022378.1|WP_003828500.1|704054_704639_+|propanediol/glycerol-family-dehydratase-medium-subunit
MECTTERKPVFTLQVSEGEAANADERVDEVVIGVGPAFAKYQHKTLIDMPHNAILKELVAGIEEEGLHARVVRILRTSDVSFMAWDAANLSGSGIGIGIQSKGTTVIHQRDLLPLSNLELFSQAPLLTLETYRQIGKNAARYARKESPSPVPVVNDQMVRPKFMAKAALFHIKETKHVVQDAAPVTLHIALVRE
>NZ_AP022378.1|WP_003828498.1|704641_705070_+|diol-dehydratase-small-subunit
MNDNIMTAQDYPLATRCPEKIQTPTGKPLTDITLENVLAGRVGPQDVRISQQTLEYQAQIAEQMQRHAVARNFRRAAELIAIPDARILEIYNALRPFRSSFAELQAIADELEHTWHARVNAGFVRESAEVYQQRNKLRKGSQ

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Crispr_ID: NZ_AP022378_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_AP022378_3

2231219-2231295

Orphan

Consensus_repeat	Method
TGTAGGCCTGATAAGCGTAGCGCA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_AP022378_3

>merge|NZ_AP022378|3|2231219-2231295|CRISPRCasFinder
TGTAGGCCTGATAAGCGTAGCGCAGCAGACAAATAGCGGGCACGTATCGAGTTTGTAGGCCTGATAAGCATAGCGCA

>NZ_AP022378|3|3|2231219-2231295|CRISPRCasFinder
TGTAGGCCTGATAAGCGTAGCGCA	GCAGACAAATAGCGGGCACGTATCGAGTT
TGTAGGCCTGATAAGCATAGCGCA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_AP022378.1\|WP_003020714.1\|2242441_2243089_+\|NAAT-family-transporter-YchE	unknown	unknown	gnl\|CDD\|236850
NZ_AP022378.1\|WP_003833370.1\|2243860_2245492_+\|oligopeptide-ABC-transporter-substrate-binding-protein-OppA	unknown	unknown	gnl\|CDD\|185059
NZ_AP022378.1\|WP_003020737.1\|2231884_2232727_-\|formyltetrahydrofolate-deformylase	unknown	unknown	gnl\|CDD\|235676
NZ_AP022378.1\|WP_003833384.1\|2233349_2234261_+\|patatin-like-phospholipase-RssA	unknown	unknown	gnl\|CDD\|182352
NZ_AP022378.1\|WP_003833390.1\|2222539_2223931_+\|NarK-family-nitrate/nitrite-MFS-transporter	unknown	unknown	gnl\|CDD\|184994
NZ_AP022378.1\|WP_003833388.1\|2228186_2229725_+\|nitrate-reductase-subunit-beta	unknown	unknown	gnl\|CDD\|224063
NZ_AP022378.1\|WP_003833385.1\|2232782_2233238_-\|YchJ-family-protein	unknown	unknown	gnl\|CDD\|234966
NZ_AP022378.1\|WP_003833386.1\|2230431_2231109_+\|respiratory-nitrate-reductase-subunit-gamma	unknown	unknown	gnl\|CDD\|273030
NZ_AP022378.1\|WP_164562693.1\|2215649_2218250_+\|molybdopterin-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|239155
NZ_AP022378.1\|WP_003020727.1\|2235569_2236478_+\|UTP--glucose-1-phosphate-uridylyltransferase-GalU	unknown	unknown	gnl\|CDD\|184021
NZ_AP022378.1\|WP_003833375.1\|2239275_2241954_-\|bifunctional-acetaldehyde-CoA/alcohol-dehydrogenase	unknown	unknown	gnl\|CDD\|237515
NZ_AP022378.1\|WP_003833392.1\|2219759_2220410_-\|two-component-system-response-regulator-NarL	unknown	unknown	gnl\|CDD\|182619
NZ_AP022378.1\|WP_003833391.1\|2220402_2222199_-\|nitrate/nitrite-two-component-system-sensor-histidine-kinase-NarX	unknown	unknown	gnl\|CDD\|182581
NZ_AP022378.1\|WP_164562692.1\|2211588_2215653_+\|nitrite-reductase-small-subunit-NirD	unknown	unknown	gnl\|CDD\|184951
NZ_AP022378.1\|WP_063940833.1\|2224446_2228190_+\|nitrate-reductase-subunit-alpha	unknown	unknown	gnl\|CDD\|162434
NZ_AP022378.1\|WP_003020723.1\|2236614_2237028_-\|DNA-binding-transcriptional-regulator-H-NS	unknown	unknown	gnl\|CDD\|182858
NZ_AP022378.1\|WP_008784954.1\|2237638_2238256_+\|thymidine-kinase	unknown	unknown	gnl\|CDD\|235272
NZ_AP022378.1\|WP_164563308.1\|2218334_2219738_+\|YchO/YchP-family-invasin	unknown	unknown	gnl\|CDD\|236661
NZ_AP022378.1\|WP_063940832.1\|2229721_2230432_+\|nitrate-reductase-molybdenum-cofactor-assembly-chaperone	unknown	unknown	gnl\|CDD\|185014
NZ_AP022378.1\|WP_164562694.1\|2234351_2235365_+\|two-component-system-response-regulator-RssB	unknown	unknown	gnl\|CDD\|182652

Protein	Function_ID	Function_description	E-value
NZ_AP022378.1\|WP_003020714.1\|2242441_2243089_+\|NAAT-family-transporter-YchE	gnl\|CDD\|236850	PRK11111, PRK11111, YchE family NAAT transporter.	1.54162e-137
NZ_AP022378.1\|WP_003833370.1\|2243860_2245492_+\|oligopeptide-ABC-transporter-substrate-binding-protein-OppA	gnl\|CDD\|185059	PRK15104, PRK15104, oligopeptide ABC transporter substrate-binding protein OppA; Provisional.	0
NZ_AP022378.1\|WP_003020737.1\|2231884_2232727_-\|formyltetrahydrofolate-deformylase	gnl\|CDD\|235676	PRK06027, purU, formyltetrahydrofolate deformylase; Reviewed.	2.94453e-175
NZ_AP022378.1\|WP_003833384.1\|2233349_2234261_+\|patatin-like-phospholipase-RssA	gnl\|CDD\|182352	PRK10279, PRK10279, patatin-like phospholipase RssA.	0
NZ_AP022378.1\|WP_003833390.1\|2222539_2223931_+\|NarK-family-nitrate/nitrite-MFS-transporter	gnl\|CDD\|184994	PRK15034, PRK15034, nitrate/nitrite transport protein NarU; Provisional.	0
NZ_AP022378.1\|WP_003833388.1\|2228186_2229725_+\|nitrate-reductase-subunit-beta	gnl\|CDD\|224063	COG1140, NarY, Nitrate reductase beta subunit [Energy production and conversion].	0
NZ_AP022378.1\|WP_003833385.1\|2232782_2233238_-\|YchJ-family-protein	gnl\|CDD\|234966	PRK01617, PRK01617, hypothetical protein; Provisional.	1.70131e-105
NZ_AP022378.1\|WP_003833386.1\|2230431_2231109_+\|respiratory-nitrate-reductase-subunit-gamma	gnl\|CDD\|273030	TIGR00351, Respiratory_nitrate_reductase_2_gamma_chain., respiratory nitrate reductase, gamma subunit. Involved in anerobic respiration the gene product catalyzes the reaction (reduced acceptor + NO3- = Acceptor + nitrite). Another possible role_id for this gene product is in nitrogen fixation (Role_id:160). [Energy metabolism, Anaerobic].	8.01113e-130
NZ_AP022378.1\|WP_164562693.1\|2215649_2218250_+\|molybdopterin-dependent-oxidoreductase	gnl\|CDD\|239155	cd02754, MopB_Nitrate-R-NapA-like, Nitrate reductases, NapA (Nitrate-R-NapA), NasA, and NarB catalyze the reduction of nitrate to nitrite. Monomeric Nas is located in the cytoplasm and participates in nitrogen assimilation. Dimeric Nap is located in the periplasm and is coupled to quinol oxidation via a membrane-anchored tetraheme cytochrome. Members of the MopB_Nitrate-R-NapA CD belong to the molybdopterin_binding (MopB) superfamily of proteins.	0
NZ_AP022378.1\|WP_003020727.1\|2235569_2236478_+\|UTP--glucose-1-phosphate-uridylyltransferase-GalU	gnl\|CDD\|184021	PRK13389, PRK13389, UTP--glucose-1-phosphate uridylyltransferase GalU.	0
NZ_AP022378.1\|WP_003833375.1\|2239275_2241954_-\|bifunctional-acetaldehyde-CoA/alcohol-dehydrogenase	gnl\|CDD\|237515	PRK13805, PRK13805, bifunctional acetaldehyde-CoA/alcohol dehydrogenase; Provisional.	0
NZ_AP022378.1\|WP_003833392.1\|2219759_2220410_-\|two-component-system-response-regulator-NarL	gnl\|CDD\|182619	PRK10651, PRK10651, transcriptional regulator NarL; Provisional.	3.40263e-141
NZ_AP022378.1\|WP_003833391.1\|2220402_2222199_-\|nitrate/nitrite-two-component-system-sensor-histidine-kinase-NarX	gnl\|CDD\|182581	PRK10600, PRK10600, nitrate/nitrite two-component system sensor histidine kinase NarX.	0
NZ_AP022378.1\|WP_164562692.1\|2211588_2215653_+\|nitrite-reductase-small-subunit-NirD	gnl\|CDD\|184951	PRK14989, PRK14989, nitrite reductase subunit NirD; Provisional.	0
NZ_AP022378.1\|WP_063940833.1\|2224446_2228190_+\|nitrate-reductase-subunit-alpha	gnl\|CDD\|162434	TIGR01580, Respiratory_nitrate_reductase_1_alpha_chain, respiratory nitrate reductase, alpha subunit. The Nitrate reductase enzyme complex allows bacteria to use nitrate as an electron acceptor during anaerobic growth. The enzyme complex consists of a tetramer that has an alpha, beta and 2 gamma subunits. The alpha and beta subunits have catalytic activity and the gamma subunits attach the enzyme to the membrane and is a b-type cytochrome that receives electrons from the quinone pool and transfers them to the beta subunit. This model is specific for the alpha subunit for nitrate reductase I (narG) and nitrate reductase II (narZ) for gram positive and gram negative bacteria.A few thermophiles and archaea also match the model The seed members used to make the model include Nitrate reductases from Pseudomonas fluorescens (GP:11344601), E.coli (SP:P09152) and B.subtilis (SP:P42175). All seed members are experimentally characterized. Some unpublished nitrate reductases, that are shorter sequences, and probably fragments fall in between the noise and trusted cutoffs. Pfam models pfam00384 (Molybdopterin oxidoreductase) and pfam01568(Molydopterin dinucleotide binding domain) will also match the nitrate reductase, alpha subunit. [Energy metabolism, Anaerobic].	0
NZ_AP022378.1\|WP_003020723.1\|2236614_2237028_-\|DNA-binding-transcriptional-regulator-H-NS	gnl\|CDD\|182858	PRK10947, PRK10947, DNA-binding transcriptional regulator H-NS.	7.52044e-78
NZ_AP022378.1\|WP_008784954.1\|2237638_2238256_+\|thymidine-kinase	gnl\|CDD\|235272	PRK04296, PRK04296, thymidine kinase; Provisional.	2.80191e-115
NZ_AP022378.1\|WP_164563308.1\|2218334_2219738_+\|YchO/YchP-family-invasin	gnl\|CDD\|236661	PRK10177, PRK10177, YchO/YchP family invasin.	0
NZ_AP022378.1\|WP_063940832.1\|2229721_2230432_+\|nitrate-reductase-molybdenum-cofactor-assembly-chaperone	gnl\|CDD\|185014	PRK15054, PRK15054, nitrate reductase molybdenum cofactor assembly chaperone.	2.99139e-88
NZ_AP022378.1\|WP_164562694.1\|2234351_2235365_+\|two-component-system-response-regulator-RssB	gnl\|CDD\|182652	PRK10693, PRK10693, two-component system response regulator RssB.	0

>NZ_AP022378.1|WP_003833386.1|2230431_2231109_+|respiratory-nitrate-reductase-subunit-gamma
MHFLNTFFFDIYPYIAGSVFLIGSWLRYDYGQYTWRAASSQMLDRKGMNLASNLFHIGILGIFAGHFLGMLTPHWMYEAWLPLEVKQKMAMFAGGASGLMCLIGGVLLLKRRLFSPRVRATTTGADILILSLLVIQCALGLLTIPFSAQHMDGSEMMKLVNWAQTVVTFQGGASQYLDGVAFIFRMHLVLGMTLFLLFPFSRLVHIWSVPVEYLTRKYQIVRARH
>NZ_AP022378.1|WP_063940832.1|2229721_2230432_+|nitrate-reductase-molybdenum-cofactor-assembly-chaperone
MIELVIVSRLLEYPDAALWQHQQELFDALASSENLDKEDAQALGVFLRDLTAQDMLDVQAAYSELFDRGRATSLLLFEHVHGESRDRGQAMVDLMAQYEQHGLQLDSRELPDHLPLYLEYLAQLPKSEALGGLQDIAPILALLSARLQQRESRYAVLFDLLLKLANTVIDSDKVAEKIADEARDDTPQALDAVWEEEQVKFFADQGCGESEISAHQRRFAGAVAPQYLNITTGGQQ
>NZ_AP022378.1|WP_003833388.1|2228186_2229725_+|nitrate-reductase-subunit-beta
MKIRSQVGMVLNLDKCIGCHTCSVTCKNVWTSREGMEYAWFNNVESKPGVGFPNDWENQEKWKGGWIRKINGKLQPRMGNKALLLGKIFANPHLPGMDDYYEPFDFDYQTLHNAPADSKAQPIARPRSLITGQRMDKITSGPNWEEILGGEFEKRAKDQNFENMQKAMYGQFENTFMMYLPRLCEHCLNPACVATCPSGAIYKREEDGIVLIDQDKCRGWRMCITGCPYKKIYFNWKSGKSEKCIFCYPRIEAGQPTVCSETCVGRIRYLGVLLYDADAIESAASTEHEKDLYQRQLDVFLDPNDPAVIEQALKDGIPLSVIDAAQQSPVYKMAMDWKLALPLHPEYRTLPMVWYVPPLSPIQSAADAGELGSNGILPDVDSLRIPVQYLANLLTAGDTQPVLLALKRMLAMRHYKRAETVDGKVDTRALEEVGLSEAQAQEMYRYLAIANYEDRFVVPSSHRELARDAFPEKSGCGFTFGDGCHGSDTKFNLFNSRRIDAVDVTSKTEPHQ
>NZ_AP022378.1|WP_063940833.1|2224446_2228190_+|nitrate-reductase-subunit-alpha
MSKFLDRFRYFKQKGETFADGHGQLLNTNRDWEDGYRQRWQHDKIVRSTHGVNCTGSCSWKIYVKNGLVTWETQQTDYPRTRPDMPNHEPRGCPRGASYSWYLYSANRLKYPLMRKRLMKMWREAKRLHSDPVDAWASIIEDADKAKSFKQARGRGGFVRSSWQEVNELIAASNVYTIKTYGPDRVAGFSPIPAMSMVSYASGARYMSLIGGTCLSFYDWYCDLPPASPQTWGEQTDVPESADWYNSSYILAWGSNVPQTRTPDAHFFTEVRYKGTKTVAITPDYAEIAKLCDLWLAPKQGTDAAMAMAMGHVMLREFHLDNPSQYFTDYVRRYTDMPMLVMLEERDGYYAAGRMLRAADLVDSLGQENNPEWKTVAINSNGEMVAPNGSIGFRWGEKGKWNLEQRDGTSGDETELQLSLLGSQDDIAEVGFPYFGGEGTEHFSKVELENILLHKLPVKRLQLADGSTALVTTVYDLTMANYGLERGLNDENCATSYDDVKAYTPAWAEKITGVSRSQIVRIAREFADNADKTHGRSMIIVGAGLNHWYHLDMNYRGLINMLVFCGCIGQSGGGWAHYVGQEKLRPQTGWQPLAFALDWQRPPRHMNSTSYFYNHSSQWRYETVTAQELLSPMADKSRYSGHLIDFNVRAERMGWLPSAPQLGTNPLRIAEEAQKAGMTPVDYTVKSLKEGSIRFAAEQPENGKNHPRNLFIWRSNLLGSSGKGHEYMLKYLLGTEHGIQGKDLGQQSGVKPEEVEWQDNGLDGKLDLVVTLDFRLSSTCLYSDIVLPTATWYEKDDMNTSDMHPFIHPLSAAVDPAWESKSDWEIYKAIAKKFSEVCVGHLGKETDVVTLPIQHDSAAELAQPLDVKDWKKGECDLIPGVTAPHIMTVERDYPATYERFTSIGPLMEKIGNGGKGIAWNTQSEMDLLRKLNYTKAEGPAKGQPMLDTAIDAAEMILTLAPETNGQVAVKAWAALSEFTGRDHTHLALNKEDEKIRFRDIQAQPRKIISSPTWSGLEDEHVSYNAGYTNVHELIPWRTLSGRQQLYQDHQWMRDFGESLLVYRPPIDTRSVKAVIGEKSNGNPEKALNFLTPHQKWGIHSTYSDNLLMLTLSRGGPIVWMSEVDAKDLGIEDNDWIEVFNSNGALTARAVVSQRVPAGMTMMYHAQERIVNLPGSEITQQRGGIHNSVTRITPKPTHMIGGYAQLAYGFNYYGTVGSNRDEFVVVRKMKNINWLDGEGNDQVQESVK
>NZ_AP022378.1|WP_003833390.1|2222539_2223931_+|NarK-family-nitrate/nitrite-MFS-transporter
MSHSSAPERASGAVITEWRPEDPAFWQQRGQRIASRNLWISVPCLLLAFCVWMLFSAVAVNLPKVGFDFTTEQLFMLTALPSVSGALLRVPYSFMVPLFGGRRWTAFSTGILIIPCVWLGFAVQDTSTPFSTFIIISLLCGFAGANFASSMANISFFFPKQKQGGALGLNGGLGNMGVSVMQLVAPLVVSLSIFAAFGSHGVEQPDGTQLYLANAAWIWVPFLAVLTLAAWFGMNELATSKASLKEQLPVLKRGHLWIMSLLYLATFGSFIGFSAGFAMLSKTQFPEVQILHYAFFGPLIGALARSAGGAISDRLGGTRVTLVNFVLMAIFSALLFLTLPSNGVGGNFIAFFAVFLALFLTAGLGSGSTFQMISVIFRKLTMDRVKAEGGSEEKAMREAATDTAAALGFISAIGAIGGFFIPKAFGTSLALTGSPVDAMKVFLIFYVACVVITWAVYGRHSKK
>NZ_AP022378.1|WP_003833391.1|2220402_2222199_-|nitrate/nitrite-two-component-system-sensor-histidine-kinase-NarX
MFKRCLSPLTLVNQVALIVLLSTAIGVAGMAVSGWLVQGVQGSAHAINKAGSLRMQSYRLLAAVPLDASDQPLLDEMEKTAFSPELTRAAKRDGQQAQLKALQDYWHTELAPGLAHAQTPDAVAQDVTRFVGGLDKLVTAFDHTTELRIERVVLLHRLMAIFMALLLVFTIIWLRVRLLEPWKQLLAMARAVSQRDFTQRARISGRNEMAALGSALNNMSEELAESYAVLEQRVQEKTAGLEHKNQILSFLWQANRRLHSQVPLCERLSPVLNGLQNLTLLHDIELRVYDLEDEDNHQEFTCQSNASCDEKGCHLCPRGTLPAIDGGITLKWRLTDAHTQYGILLATLPNGRHLSHDQQQLVDTLVEQLTATLALDRHQERQQQLIVMEERATIARELHDSIAQSLSCMKMQVSCLQMQGDALSDNCRELLSQIRNELNASWAQLRELLTTFRLQLTEPGLRPALEASCQEYSARFGFTVKLDYQLPPRLVPSHQAIHLLQIAREALSNALKHSQANEVVVTVVQNGKQVKLTVQDNGCGVPENAERSNHYGMIIMRDRAQSLRGDCRVRRRETGGTEVAVTFIPETNFTEVQGDTHE
>NZ_AP022378.1|WP_003833392.1|2219759_2220410_-|two-component-system-response-regulator-NarL
MSNLEPATILLIDDHPMLRTGVKQLVSMAPDITVVGEASNGEQGIELAESLDPDLILLDLNMPGMNGLETLDKLREKSLSGRIVVFSVSNHEEDVVTALKRGADGYLLKDMEPEDLLKALQQSAAGEMVLSEALTPVLAASLRANRATSDRDVTQLTPRERDILKLIAQGLPNKMIARRLDITESTVKVHVKHMLKKMKLKSRVEAAVWVHQERIF
>NZ_AP022378.1|WP_164563308.1|2218334_2219738_+|YchO/YchP-family-invasin
MKASNDLSRFVCCRFSLLLLLPLAGGIASARTSFIYQAENPFDNNSDGLPDLGLAPESRAGEKHFAEMVKAFGEASMTDNGLDTGEQAKQFAFGQVRDTVSEQVNQQLESWLSPWGNASVGLQVDNEGSFTGSRGSWFIPWQDNPRYLTWSQLGLTQQDEGLVSNAGIGQRWVRDGWFLGYNTFYDNLLDENLPRGGLGAEAWGEYLRLSANYYQPLSSWQERSATQEQRMARGYDLTAQMRMPFYQHLNTSVSVEQYFGDRVDLFHSGTGYHNPVAVNLGLSYTPVPLITVTAQHKQGESGISQNNLGLTLNYRFGVPLKKQLMVSEVANSRSLRGSRYDDPQRNNLPTLEYRQRKTLSVFLATPPWDLKSGESVALKLQVRSLHGIRHLTWQGDTQALSLTVGSDNRNVQGWTIIMPKWDSSEGATNRWRLSVVVEDEQGQRVSSNEITLSLTEPFITVSENDPR
>NZ_AP022378.1|WP_164562693.1|2215649_2218250_+|molybdopterin-dependent-oxidoreductase
MSETRTTCPYCGVGCGVIAQVDNNGVTVRGDPEHPANFGRLCVKGAALAETTGLSGRLLQPMVDGETASWSQALDTAGERLRAIIAQHGPHAVAFYASGQLLTEDYYAANKLMKGFIGAANIDTNSRLCMSSAVTGYKRALGADVVPCSYEDIECSDLVVLVGSNAAWTHPVLYQRLVQARNANPSMKVVVIDPRCTATCDIGDLHLSLLPGSDAGLFVGLLNRIVAEGNAQSEFDDAAETFAIARDWSLARVAQFCGLDVADIVTFYDWFMRAPTAITLYTMGINQSASGSDKCNAIINVHLASGKFGRQGCGPFSLTGQPNAMGGREVGGLATQLAAHMNFEPQDLARLSRFWGTERLAQTPGLMAVDLFEAIGKGDVKAVWIMGTNPAVSLPDSHAVCQALAACPLVIVSEVVADTDTSRYAHIRFPAQAWGEKNGTVTNSERRISRQRAFLPAPGETRADWWIVAQIAKQLGFAHAFGWQSAWEVFCEHAALSGYENRGERAFDIGALAELTHQQWDEMTPVRWPVSTGSSTLNFWQGWRGNQRLRLVSVTPQGMKTACDALYPLVLNSGRIRDQWHTMTRTGTISRLMQHINEPLVEIAPEDTYRLKLNEGALCRVNSPRGVMVGRVTIHRGQRPGNVFTSMHWNNHFARQGRVNALVAPICDPDSGQPESKQTAVRIMAWQPRWQGELFCRSVLTLPGFVHWWRKSADNAVRYTLAGDSDISAWLQQYCVTQGWQLQQAKWEQGLNLLAWHEGKLMLGLWSAATLPQIDDAAILCAFMQTPENAQTRHALLGGKPGGITADKGATICSCYSVGEKAITQAIANGCDTVQALGKALRCGSNCGSCIPELKTLLAQKITLND
>NZ_AP022378.1|WP_164562692.1|2211588_2215653_+|nitrite-reductase-small-subunit-NirD
MTRLVIVGHGMAATRLIEALVMYKNGGISVTVIGEEPQLAYNRIQLSPVLGGEKPFAQTLLHPAQWYLDHGVTVLSDEAVLAVDATSRSLTTTKRLLFWDELVFSTGSYPFIPPIPGVQQPHVHAFRTMQDVEAILQQSGPKVVLGGGVLGVEAAAALRLHGDDVTLIHRAGRLMEQQLDQQASDLLQAQLTGRGIRCELSSGLVSIEADCVTLLDGQRIAADGVVIATGVKPNISLAQECGAVCQQGIVVDEQLRTSMPGISAVGECCEINGQTWGLVAPCLKQAEVLAARLAGFIGAGFGWQASGTRLKVTGIDLFSAGVTDTTATDATLSTYDPLSGHYRRLLTRDGKLHGVLLMGDCHSAAPLTDLLAQGATAHSDWLFDRFDTQPSAAGQMTMTKPTLAVVGHGMVGHHFLEQCVSRNLHLHYHIVVFGEERYAAYDRVHLSEYFAGRSAQSLSLVADDFFARNGIELRLGQCVTEIDREMHVIRNADGHETHWDSLVLATGSYPFVPPVKGGDSPACFVYRTLDDLDAIAAKAKSARRGVVIGGGLLGLEAANALRQLGLETHVVEFAANLMAVQLDNAGAAMLREKIEALGVGVHTAKSTTEIESTTDGLVLHFADGEKLETEMVVFSAGIRPQDALARRSGLDIGERGGICIDSHCRTSDDAIFAIGECALWEGRVFGLVAPGYQMARVVAAQLAGEDVSFNGADMSTKLKLLGVDVASFGDAHARTPGAKSYQWTHGPEQIYKKIVVSAEGKTLLGGVLVGDAGDYATLLQMMLNGMPLPGQPESLILPALAGGAPKALGVAALPDTAQICSCHNVSKADICRAVSAGATDIGAIKQCTKAATGCGGCSALVQQVMEHQLAAQGVEVKKDICEHFPWSRQEIYHLVRVNHIHTFEQLISRYGHGHGCEICKPLVGSVLASCWNEYLLKPAHLPLQDTNDRYFANIQKDGSYSVVPRMPAGEVTPDGLIAIGQIAKRYQLYSKITGGQRVDLFGARLEQLPDIWRELVAAGFETGHAYGKSLRTVKSCVGSTWCRYGVQDSTAMAVMLENRYKGLRAPHKIKMAVSGCTRECAEAQSKDVGVIATDKGWNLYLCGNGGMKPRHADLFASDLDDTALMRTIDRFLMFYIRTADRLQRTSTWMDNLEGGIAYLREVILDDSLGIASELEQEMARVVESYQCEWQTTLSSPQRLALFRSYINSDEADETVARAPLRGQPQLAKPASRGRESLPTKPWQEICTLDAIPEQAGIGARLGDVQIALFRFGQTIYALDNLEPGSAAQVLSRGILGDVQGEPIVISPLYKQRIRLRDGRQYDSGEQAVRAWPVKVEAGKVWVGTQALILRAEAS
>NZ_AP022378.1|WP_003020737.1|2231884_2232727_-|formyltetrahydrofolate-deformylase
MHSLQRKVLRTICPDQKGLIARITNICYKHELNIVQNNEFVDHRTGRFFMRTELEGIFNDVTLLADLDSALPEGSIRELTPAGRRRIVILVTKEAHCLGDLLMKANYGGLDVEIAAVIGNHETLRPLVERFDIPFELVSHEGLTRDEHDQKMADAIDAHQPDYVVLAKYMRVLTPTFVSRFPNKIINIHHSFLPAFIGARPYHQAYERGVKIIGATAHYVNDNLDEGPIIMQDVIHVDHTYTAEDMMRAGRDVEKNVLSRALYQVLAQRVFVYGNRTIIL
>NZ_AP022378.1|WP_003833385.1|2232782_2233238_-|YchJ-family-protein
MSQLCPCGSAVEYSLCCYRYVSGAQVAPTPSHLMRSRYCAFVMKDADYLIRTWHPNCHAAEFRDDIIAGFTHTEWLGLTVFEQETADTENIGYVSFVARFSEQGKTGAIIERSRFLKENGQWYYIDGTRPQIGRNDTCPCGSGKKFKKCCG
>NZ_AP022378.1|WP_003833384.1|2233349_2234261_+|patatin-like-phospholipase-RssA
MRKIKIGLALGSGAARGWSHIGVIKALKHMGIDVDIVAGCSIGSLVGAAYACNKLPALEKWVCSFSYWDVLRLMDLSWRRGGLLRGERVFNQYRNVMPVEAIEQCTRRFATVATNLSTGRELWFTEGDLHLAVRASCSIPGLMSPVAHNGYWLVDGAVVNPVPVSLTRALGADIVIAVDLQHDAHLMQQDLLSFNVNSDAESGDDGDELSWHARLKERLSNITARRAVTAPTAMEIMTTSIQVLENRLKRNRMAGDPPDILIQPFCPQISTLDFHRASAAIAAGQLAVEKKMDELLPLVKTNV
>NZ_AP022378.1|WP_164562694.1|2234351_2235365_+|two-component-system-response-regulator-RssB
MTQPLVGKQILIVEDEPVFRSLMDSWFSSLGATTAVAGDGLEALDLLGHFKPDLMICDLAMPRMNGLKLVEYLRNRGDQTPILVISATENMSDIAKALRLGVDDVLLKPVKDLNRLRETVFACLYPNMFNSRVEEEERLFRDWDAMVDDPTAAAKLLKELQPPVSQVLSHCRINYRQLVAADQPGLVLDIAPLSDHDLAFYCLDVTRAGDNGVLAALLLRALFNGLLQEQLTQQNQRLPELGTLLKQVNHLLRQANLPGQFPLLVGYYHSGLKNLILVSAGLNATLNTGSHQVQISNGVPLGTLGNTYLNQLSQHCESWQCQIWGAGGRLRLMLSAE
>NZ_AP022378.1|WP_003020727.1|2235569_2236478_+|UTP--glucose-1-phosphate-uridylyltransferase-GalU
MAALNSKVKKAVIPVAGLGTRMLPATKAIPKEMLPLVDKPLIQYVVNECIAAGITEIVLVTHSSKNSIENHFDTSFELEAMLEKRVKRQLLEEVQSICPPHVTIMQVRQGLAKGLGHAVLCAHPVVGDEPVAVILPDVILDEYESDLSRDNLAEMIHRFDETGSSQIMVEPVEDVTAYGVVDCKGVELSPGESVPMVGVVEKPKADVAPSNLAVVGRYVLSADIWPLLAKTPPGAGDEIQLTDAIDMLIEKETVEAYHMKGKSHDCGNKLGYMQAFVEYGIRHNTLGAEFKAWLEDEMGIKK
>NZ_AP022378.1|WP_003020723.1|2236614_2237028_-|DNA-binding-transcriptional-regulator-H-NS
MSEALKILNNIRTLRAQARECTLETLEEMLEKLEVVVSERREEESAAAAEVEERTRKLQQYREMLIADGIDPNELLNSMAAVKSGTKAKRAARPAKYSYVDENGETKTWTGQGRTPAVIKKAMEEQGKQLDDFLIKE
>NZ_AP022378.1|WP_008784954.1|2237638_2238256_+|thymidine-kinase
MAQLYFYYSAMNAGKSTALLQSSYNYQERGMRAVVYTAEIDDRFGAGKVSSRIGLSSPAKLFNQNSSLFEEIRAENAQQRIHCVLVDESQFLTRQQVYELSEVVDQLDIPVLCYGLRTDFRGELFGGSEYLLAWSDKLVELKTICFCGRKASMVLRLDQAGRPYNEGEQVVIGGNERYVSVCRKHYKQAQSEGSLTAIQERHSHD
>NZ_AP022378.1|WP_003833375.1|2239275_2241954_-|bifunctional-acetaldehyde-CoA/alcohol-dehydrogenase
MAVTNVAELNALVERVKKAQREYASFTQEQVDKIFRAAALAAADARIPLAKMAVAESGMGIVEDKVIKNHFASEYIYNAYKDEKTCGVLSEDDTFGTITIAEPIGIICGIVPTTNPTSTAIFKSLISLKTRNAIIFSPHPRAKDATNKAADIVLQAAIAAGAPKDLIGWIDQPSVELSNALMHHPDINLILATGGPGMVKAAYSSGKPAIGVGAGNTPVVIDETADIKRAVASVLMSKTFDNGVICASEQSVVVVDSVYDAVRERFATHGGYMLQGKELKAVQDVILKNGALNAAIVGQPAYKIAELAGFSVPETTKILIGEVKVVDESEPFAHEKLSPTLAMYRAKDFEDAVIKAEKLVAMGGIGHTSCLYTDQDNQPERVAYFGQMMKTARILINTPASQGGIGDLYNFKLAPSLTLGCGSWGGNSISENVGPKHLINKKTVAKRAENMLWHKLPKSIYFRRGSLPIALDEVITDGHKRALIVTDRFLFNNGYADQITSVLKAAGVETEVFFEVEADPTLTVVRKGAELANSFKPDVIIALGGGSPMDAAKIMWVMYEHPETHFEELALRFMDIRKRIYKFPKMGVKAKMIAVTTTSGTGSEVTPFAVVTDDATGQKYPLADYALTPDMAIVDANLVMDMPKSLCAFGGLDAVTHALEAYVSVLASEFSDGQALQALKLLKENLPASYHEGSKNPVARERVHSAATIAGIAFANAFLGVCHSMAHKLGSQFHIPHGLANALLISNVIRYNANDNPTKQTAFSQYDRPQARRRYAEIADHLGLSAPGDRTAAKIQKLLGWLEEIKAELGIPKSIREAGVQEADFLAHVDKLSEDAFDDQCTGANPRYPLISELKQILLDTYYGREYSEGQTAAKTEAVAAPKAEKKAKKSA
>NZ_AP022378.1|WP_003020714.1|2242441_2243089_+|NAAT-family-transporter-YchE
MIQTLFDFPVYFKFFIGLFALVNPVGIIPVFISMTSYQTAAARNKTNLTANLSVAIILWTSLFLGDGILQLFGISIDSFRIAGGILVVTIAMSMISGKLGEDKQNKQEKSETAIRESIGVVPLALPLMAGPGAISSTIVWGTRYHSAINLFGFFVAIALFALCCWGLFRMAPWLVRLLGQTGINVITRIMGLLLMALGIEFIVTGIKSIFPGLLA
>NZ_AP022378.1|WP_003833370.1|2243860_2245492_+|oligopeptide-ABC-transporter-substrate-binding-protein-OppA
MTNITKKSLVAAGILTALVAGNVATAAEVPAGVQLAEKQTLVRNNGSEVQSLDPHKIEGVPESNINRDLFEGLLISDVDGKPSPGVAEKWENKDFKVWTFHLRKDAKWSDGTPVTAQDFVYSWQRLANPNTASPYASYLQYGHIVNIDDIIAGKKPITDLGVKALDDHTFEVTLSEPVPYFYKLLVHSSVSPVPRAAVEKFGEKWTQPANIVTNGAYKLKDWVVNERIVLERNTNYWDNAKTVINQVTYLPISSEVTDVNRYRSGEIDMTYNNMPIELFQKLKKEIPNEVHVDPYLCTYYYEINNQKAPFNDVRVRTALKLALDRDIIVNKVKNQGDLPAYSFTPPYTDGAKLVEPEWFKWSQEKRNEEAKKLLAEAGYTAEKPLTFDLLYNTSDLHKKLAIAAASIWKKNLGANVKLENQEWKTFLDTRHQGNYDVSRAGWCADYNEPTSFLNMVLSDSSNNTVHYKSPAFDKLIADTLKVTDEAQRSELYSKAEQQLDKDSAIVPVYYYVNARLVKPWVGGYSGKDPMDNIHVKDLYIIKH

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Crispr_ID: NZ_AP022378_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_AP022378_4

4600834-4600952

Orphan

Consensus_repeat	Method
CGGCCTACATCGGTATGCTGGTCTTGTAGGCC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_AP022378_4

>merge|NZ_AP022378|4|4600834-4600952|CRISPRCasFinder
CGGCCTACATCGGTATGCTGGTCTTGTAGGCCTGATAAGCGTAGCGCATCAGGCACACCCGTCGCCGGATGCGGCTAACGCCTTATCCGGCCTACATCGGTATGCCGGTCTTGTAGGCC

>NZ_AP022378|4|4|4600834-4600952|CRISPRCasFinder
CGGCCTACATCGGTATGCTGGTCTTGTAGGCC	TGATAAGCGTAGCGCATCAGGCACACCCGTCGCCGGATGCGGCTAACGCCTTATC
CGGCCTACATCGGTATGCCGGTCTTGTAGGCC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_AP022378.1\|WP_003826641.1\|4597042_4598692_+\|cation/acetate-symporter-ActP	unknown	unknown	gnl\|CDD\|236495
NZ_AP022378.1\|WP_003826630.1\|4604731_4605190_-\|redox-sensitive-transcriptional-activator-SoxR	unknown	unknown	gnl\|CDD\|184964
NZ_AP022378.1\|WP_063941232.1\|4590478_4591435_-\|cytochrome-c-nitrite-reductase-subunit-NrfD	unknown	unknown	gnl\|CDD\|274450
NZ_AP022378.1\|WP_003826643.1\|4596731_4597046_+\|DUF485-domain-containing-protein	unknown	unknown	gnl\|CDD\|225704
NZ_AP022378.1\|WP_003826627.1\|4605602_4607189_-\|EAL-domain-containing-protein	unknown	unknown	gnl\|CDD\|227279
NZ_AP022378.1\|WP_003031731.1\|4605276_4605600_+\|superoxide-response-transcriptional-regulator-SoxS	unknown	unknown	gnl\|CDD\|182314
NZ_AP022378.1\|WP_003031761.1\|4591431_4592103_-\|cytochrome-c-nitrite-reductase-Fe-S-protein	unknown	unknown	gnl\|CDD\|274451
NZ_AP022378.1\|WP_003826645.1\|4594581_4596540_+\|acetate--CoA-ligase	unknown	unknown	gnl\|CDD\|234677
NZ_AP022378.1\|WP_003826638.1\|4599419_4599830_-\|CidA/LrgA-family-protein	unknown	unknown	gnl\|CDD\|224298
NZ_AP022378.1\|WP_003826632.1\|4602773_4604123_-\|guanine/hypoxanthine-transporter-GhxP	unknown	unknown	gnl\|CDD\|225161
NZ_AP022378.1\|WP_003826649.1\|4592099_4592666_-\|cytochrome-c-nitrite-reductase-pentaheme-subunit	unknown	unknown	gnl\|CDD\|183264
NZ_AP022378.1\|WP_003826636.1\|4599931_4600822_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|176129
NZ_AP022378.1\|WP_003826634.1\|4600969_4602616_-\|Na+/H+-antiporter	unknown	unknown	gnl\|CDD\|129911
NZ_AP022378.1\|WP_003826621.1\|4608089_4608614_-\|single-stranded-DNA-binding-protein-SSB1	unknown	unknown	gnl\|CDD\|236362
NZ_AP022378.1\|WP_003826647.1\|4592710_4594147_-\|ammonia-forming-nitrite-reductase-cytochrome-c552-subunit	unknown	unknown	gnl\|CDD\|236854
NZ_AP022378.1\|WP_008786927.1\|4612070_4612427_-\|MmcQ/YjbR-family-DNA-binding-protein	unknown	unknown	gnl\|CDD\|225197
NZ_AP022378.1\|WP_126957369.1\|4612554_4613268_-\|acid-phosphatase-AphA	unknown	unknown	gnl\|CDD\|236818
NZ_AP022378.1\|WP_003826639.1\|4598737_4599427_-\|LrgB-family-protein	unknown	unknown	gnl\|CDD\|224265
NZ_AP022378.1\|WP_164563238.1\|4608865_4611688_+\|excinuclease-ABC-subunit-UvrA	unknown	unknown	gnl\|CDD\|234734
NZ_AP022378.1\|WP_003826625.1\|4607741_4608023_+\|YjcB-family-protein	unknown	unknown	gnl\|CDD\|374240

Protein	Function_ID	Function_description	E-value
NZ_AP022378.1\|WP_003826641.1\|4597042_4598692_+\|cation/acetate-symporter-ActP	gnl\|CDD\|236495	PRK09395, actP, cation/acetate symporter ActP.	0
NZ_AP022378.1\|WP_003826630.1\|4604731_4605190_-\|redox-sensitive-transcriptional-activator-SoxR	gnl\|CDD\|184964	PRK15002, PRK15002, redox-sensitive transcriptional activator SoxR.	2.81792e-107
NZ_AP022378.1\|WP_063941232.1\|4590478_4591435_-\|cytochrome-c-nitrite-reductase-subunit-NrfD	gnl\|CDD\|274450	TIGR03148, cyt_nit_nrfD, cytochrome c nitrite reductase, NrfD subunit. Members of this protein family are NrfD, a highly hydrophobic protein encoded in the nrf operon, which encodes cytochrome c nitrite reductase. This multiple heme-containing enzyme can reduce nitrite to ammonia. Members belong to a broader Pfam protein family, pfam03916, which also contains an NrfD-related subunit of polysulphide reductase. [Energy metabolism, Electron transport].	1.44394e-157
NZ_AP022378.1\|WP_003826643.1\|4596731_4597046_+\|DUF485-domain-containing-protein	gnl\|CDD\|225704	COG3162, COG3162, Predicted membrane protein [Function unknown].	2.05158e-50
NZ_AP022378.1\|WP_003826627.1\|4605602_4607189_-\|EAL-domain-containing-protein	gnl\|CDD\|227279	COG4943, COG4943, Predicted signal transduction protein containing sensor and EAL domains [Signal transduction mechanisms].	0
NZ_AP022378.1\|WP_003031731.1\|4605276_4605600_+\|superoxide-response-transcriptional-regulator-SoxS	gnl\|CDD\|182314	PRK10219, PRK10219, superoxide response transcriptional regulator SoxS.	9.05826e-64
NZ_AP022378.1\|WP_003031761.1\|4591431_4592103_-\|cytochrome-c-nitrite-reductase-Fe-S-protein	gnl\|CDD\|274451	TIGR03149, cyt_nit_nrfC, cytochrome c nitrite reductase, Fe-S protein. Members of this protein family are the Fe-S protein, NrfC, of a cytochrome c nitrite reductase system for which the pentaheme cytochrome c protein, NrfB (family TIGR03146) is an unambiguous marker. Members of this protein family show similarity to other ferredoxin-like proteins, including a subunit of a polysulfide reductase. [Energy metabolism, Electron transport].	1.23614e-143
NZ_AP022378.1\|WP_003826645.1\|4594581_4596540_+\|acetate--CoA-ligase	gnl\|CDD\|234677	PRK00174, PRK00174, acetyl-CoA synthetase; Provisional.	0
NZ_AP022378.1\|WP_003826638.1\|4599419_4599830_-\|CidA/LrgA-family-protein	gnl\|CDD\|224298	COG1380, COG1380, Putative effector of murein hydrolase LrgA [General function prediction only].	2.05335e-34
NZ_AP022378.1\|WP_003826632.1\|4602773_4604123_-\|guanine/hypoxanthine-transporter-GhxP	gnl\|CDD\|225161	COG2252, COG2252, Xanthine/uracil/vitamin C permease [Nucleotide transport and metabolism].	2.76229e-144
NZ_AP022378.1\|WP_003826649.1\|4592099_4592666_-\|cytochrome-c-nitrite-reductase-pentaheme-subunit	gnl\|CDD\|183264	PRK11659, PRK11659, cytochrome c nitrite reductase pentaheme subunit; Provisional.	1.37294e-110
NZ_AP022378.1\|WP_003826636.1\|4599931_4600822_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|176129	cd08438, PBP2_CidR, The C-terminal substrate binding domain of LysR-like transcriptional regulator CidR, contains the type 2 periplasmic binding fold. This CD includes the substrate binding domain of CidR which positively up-regulates the expression of cidABC operon in the presence of acetic acid produced by the metabolism of excess glucose. The CidR affects the control of murein hydrolase activity by enhancing cidABC expression in the presence of acetic acid. Thus, up-regulation of cidABC expression results in increased murein hydrolase activity. This substrate binding domain has significant homology to the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	6.04763e-89
NZ_AP022378.1\|WP_003826634.1\|4600969_4602616_-\|Na+/H+-antiporter	gnl\|CDD\|129911	TIGR00831, Putative_Na+/H+_exchanger_Rv2287/MT2345/Mb2309., Na+/H+ antiporter, bacterial form. The Monovalent Cation:Proton Antiporter-1 (CPA1) Family (TC 2.A.36) The CPA1 family is a large family of proteins derived from Gram-positive and Gram-negative bacteria, blue green bacteria, yeast, plants and animals. Transporters from eukaryotes have been functionally characterized, and all of these catalyze Na+:H+ exchange. Their primary physiological functions may be in (1) cytoplasmic pH regulation, extruding the H+ generated during metabolism, and (2) salt tolerance (in plants), due to Na+ uptake into vacuoles. This model is specific for the bacterial members of this family. [Transport and binding proteins, Cations and iron carrying compounds].	0
NZ_AP022378.1\|WP_003826621.1\|4608089_4608614_-\|single-stranded-DNA-binding-protein-SSB1	gnl\|CDD\|236362	PRK09010, PRK09010, single-stranded DNA-binding protein; Provisional.	4.66491e-115
NZ_AP022378.1\|WP_003826647.1\|4592710_4594147_-\|ammonia-forming-nitrite-reductase-cytochrome-c552-subunit	gnl\|CDD\|236854	PRK11125, nrfA, ammonia-forming cytochrome c nitrite reductase.	0
NZ_AP022378.1\|WP_008786927.1\|4612070_4612427_-\|MmcQ/YjbR-family-DNA-binding-protein	gnl\|CDD\|225197	COG2315, MmcQ, Uncharacterized protein conserved in bacteria [Function unknown].	8.35622e-50
NZ_AP022378.1\|WP_126957369.1\|4612554_4613268_-\|acid-phosphatase-AphA	gnl\|CDD\|236818	PRK11009, aphA, class B acid phosphatase.	2.61502e-170
NZ_AP022378.1\|WP_003826639.1\|4598737_4599427_-\|LrgB-family-protein	gnl\|CDD\|224265	COG1346, LrgB, Putative effector of murein hydrolase [Cell envelope biogenesis, outer membrane].	2.41609e-88
NZ_AP022378.1\|WP_164563238.1\|4608865_4611688_+\|excinuclease-ABC-subunit-UvrA	gnl\|CDD\|234734	PRK00349, uvrA, excinuclease ABC subunit UvrA.	0
NZ_AP022378.1\|WP_003826625.1\|4607741_4608023_+\|YjcB-family-protein	gnl\|CDD\|374240	pfam15940, YjcB, Family of unknown function. This family of proteins is found in bacteria. Proteins in this family are approximately 90 amino acids in length.	9.24285e-41

>NZ_AP022378.1|WP_003826636.1|4599931_4600822_+|LysR-family-transcriptional-regulator
MDIRTLRYFVEVVRQQSFTRAAEKLFVTQPTISKMLKNLEDELNCTLLIRDGRRLLLTDTGQVVFERGLAILAEFRQLEAELSDINHLNKGVLRLGIPPMVGMLMAGPIGLFRQRYPGVELKVSEFGGLTVQQAVMNGDLDVAMTALPVEEESGLATLPLFSHPLCVLVPRSGQWTTCESIPPEALAEHPLLIYNEDFALSRQLLELFSQHNVKPRIAVRSGQWDFLAAMVQAGVGIAILPEPICQRLDKQTLRWIPLESDLRWQLGMIWREGVYLSHSAQAWLKCCEGFWLPQAS
>NZ_AP022378.1|WP_003826638.1|4599419_4599830_-|CidA/LrgA-family-protein
MAVAISRVTPAVIHRLQIPVQVLLYAGLFVFAQYLVSWLHLPLPANLVGMVLMLALIVCRVIPLNWIRAGARWLLAEMLLFFVPAVVAVVNYTQLLLVDGWRIFAVIAISTLMVLGATAWVVDKVYRYEMRRLNRE
>NZ_AP022378.1|WP_003826639.1|4598737_4599427_-|LrgB-family-protein
MSNFQLSVLCLVITLGIYFANKRLYRRFRKLPLMPLVLTPALLVLMLVFGHISWQNYIGESHWLLWLLGPATIAFAVPVYDNLAVIKRHWMSLTAGVVTATLVAVTSSVWLARLFMLPDEIQRSLAVRSVTTPFALAAAEPLGGQPDLVALFVVVTGVFGMAVGDVLFLRLSIREGMAKGAGFGAASHGAGTARSYELGQQEGVVASLVMMLSGVVMVLVAPLVAKLMF
>NZ_AP022378.1|WP_003826641.1|4597042_4598692_+|cation/acetate-symporter-ActP
MKRVLTALAATLPFAANAADAISGAVQRQPTNWQAIIMFLIFVIFTLGITYWASKRVRSRNDYYTAGGNITGFQNGLAIAGDYMSAASFLGISALVFTSGYDGLIYSLGFLVGWPIILFLIAERLRNLGRYTFADVASYRLKQGPIRILSACGSLVVVALYLIAQMVGAGKLIELLFGLNYHIAVVLVGVLMMMYVLFGGMLATTWVQIIKAVLLLFGASFMAFMVMKHVGFSFNNLFTEAMAVHPKGSAIMSPGGLVKDPISALSLGLGLMFGTAGLPHILMRFFTVSDAREARKSVFYATGFMGYFYILTFIIGFGAIMLVGANPAYKDAAGALIGGNNMAAVHLANAVGGNLFLGFISAVAFATILAVVAGLTLAGASAVSHDLYANVFRKGATEREELRVSKITVLVLGVIAILLGVLFENQNIAFMVGLAFAIAASCNFPIILLSMYWSKLTTRGAMLGGWLGLLTAVVLMVLGPTIWVQILGHEKAIFPYEYPALFSISVAFLGIWFFSATDNSEEGNREREQFRAQFIRSQTGYGVEQGRAH
>NZ_AP022378.1|WP_003826643.1|4596731_4597046_+|DUF485-domain-containing-protein
MNDQIYQRIEDSARFRELVEKRQRFATILSIIMLAVYIGFILLIAFAPGWLGTPLHAGTSVTRGIPIGVGVILISFILTGIYIWRANGEFDRLNNAVLHEVKAS
>NZ_AP022378.1|WP_003826645.1|4594581_4596540_+|acetate--CoA-ligase
MSQIHKHAIPANIADRCLINPEQYAEKYQQSVNEPDTFWGEQGKILDWIKPYSQVKNTSFAPGNVSIKWYEDGTLNLAANCLDRHLQANGDRTAIIWEGDDATQSKNITYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHSVIFGGFSPEAVAGRIIDSNSRLVITADEGVRAGRAIPLKKNVDDALKNPNVKTVEHVVVLKRTGGKTEWQEGRDLWWSDLIEKASSEHQPEEMNAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDYHQGDIYWCTADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMSQVVDKHQVNILYTAPTAIRALMAEGDKAIEGTDRSSLRILGSVGEPINPEAWEWYWKKIGNEKCPVVDTWWQTETGGFMITPLPGATELKAGSATRPFFGVQPAIVDNEGNPLEGATEGNLVITDSWPGQARTLFGDHERFEQTYFSTFKNMYFSGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALVSHPKIAEAAVVGIPHNIKGQAIYAYVTLNHGEEPSPELYAEVRNWVRKEIGPLATPDVLHWTDSLPKTRSGKIMRRILRKIAAGDTSNLGDTSTLADPGVVEKLLEEKQAIAMPS
>NZ_AP022378.1|WP_003826647.1|4592710_4594147_-|ammonia-forming-nitrite-reductase-cytochrome-c552-subunit
MARIKSRVRRFFSLLLPLLFISAVHAEQTSVPAKTVTVEAKNETFAPQHPDQYLSWKATSEQSAREDALAEDPRLVILWAGYPFSRDYNKPRGHAYAVTDVRETLRTGAPKTAEDGPLPMACWSCKSPDVARLIQKDGEDGYFHGKWARGGPEIVNNLGCADCHNTASPDFAKGKPELTLSRPYAERAMEAIGKPFEKAGRFDQQSMVCGQCHVEYYFDGKNKAVKFPWDDGMKVENMEKYYDNIAFSDWTNSLSKTPMLKAQHPEYETWSAGIHGKNNVTCIDCHMPKVQNAEGKIYTDHKIGNPFDNFPQTCANCHTQDKASLQKVVAERKQAIHDLKIKVEDQLVRAHFEAKAAWDAGATEAEMKPILEDIRHAQWRWDLSIASHGIHMHAPEEGLRMLGSAMDKAADARTKLVRLLATKGITHEIPLPDISTKEKAQAAIGLNMQQINAEKQDFIKTVIPQWEDQARKNGLLSQ
>NZ_AP022378.1|WP_003826649.1|4592099_4592666_-|cytochrome-c-nitrite-reductase-pentaheme-subunit
MSVLRSLLTAGVLASGLLWSLSGITATPTPQESDQRWTVTQQRNPDAACLDCHKPDTEGMHGKHAEVINPNNKLPVTCTNCHGQPSPNHREGVKDVMRFNEPMYNVEQQNSVCMSCHLPEQLQKAFWPHDVHVTKVACASCHSLHPKQDTMQTLSDKGRIKICVDCHSDQRNNPNFNPASIPLLKEHP
>NZ_AP022378.1|WP_003031761.1|4591431_4592103_-|cytochrome-c-nitrite-reductase-Fe-S-protein
MSCSRRQFITGVGALVAVSGTAGRVVAKTLNINGVRYGMVHDESLCIGCTACMDACREVNNVPEGVSRLTIIRSEPQGTFPDVKYRFFRHSCQHCDHAPCVDVCPTGASYRDAASGIVDVNPDLCVGCQYCIAACPYRVRFIHPVSKTADKCDFCRKTNLKAGKQPACVESCPTKALTFGNLDDPNSDISRLLQQKTTYRYKLALGTKPKVYRVPFKFGEVSQ
>NZ_AP022378.1|WP_063941232.1|4590478_4591435_-|cytochrome-c-nitrite-reductase-subunit-NrfD
MTSASAFHFESLVWDWPIAIYLFLIGISAGLVTLAILLRRFHPEAGGSDSTLLRTTLVLGPGAIIFGLLILVFHLTRPWTFWKLMFHYSFTSVMSMGVMLFQLYMVVLVLWLAKIFEKEVIALQQRWLPRLGIVQKVLTLIGPFHRALETLMLVLAVLLGAYTGFLLSALKSYPFLNNPILPVLFLFSGISSGAAVALIAMALRHRSNPHSTEAHFVHRMEVPVVWLEIFLLAAFFVGLALGDDGKMRALAAALGGGFWTWWFWLGVAGLGLILPMLLKPWANRSSTFHGVLAVCGASLTGVLLLRFFILYAGQLTVA
>NZ_AP022378.1|WP_003826634.1|4600969_4602616_-|Na+/H+-antiporter
MEIFFTILIMTLVVSLSGVFTRVLPFQLPLPLMQIAIGALLAWPTFGLHVEFDPELFLVLFIPPLLFADGWKTPTREFLEHGREIFGLALALVLVTVVGIGFMIYWLVPGIPLIPAFALAAVLSPTDAVALSGIVGEGRIPKKIMGILQGEALMNDASGLVSLKFAVAVAMGTMVFTVGGATLEFFKVAIGGILAGFVVSWLYGRSLRFLSRWGGDEPATQIVLLFLLPFASYLIAEHIGVSGILAAVAAGMTITRSGVMRRAPLAMRLRANSTWAMLEFVFNGMVFLLLGLQLPGILESSLAAAEADPNVEIWMLFTDVVLIYVALMLVRFGWLWTMKKFSLRFLKKKPMEFGSWTTREIMIASFAGVRGAITLAGVLSIPLLLPDGSGFPARYELIFLAAGVILFSLFVGVVMLPILLQHLEVADHSQQQKEERIARAATAEVAIVAIQKMEERLAADTEENIDNQLLTEVSSRVIGNLRRRADGRNDVESSMQEENLERRFRLAALRSERAELYHLRATREISNETLQKLLHDLDLLEALLIENQ
>NZ_AP022378.1|WP_003826632.1|4602773_4604123_-|guanine/hypoxanthine-transporter-GhxP
MSTPSARTGGSLDAWFKISLRGSTVRQEVVAGLTTFLAMVYSVIVVPGMLGKAGFPPAAVFVATCLVAGVGSIVMGLWANLPLAIGCAISLTAFTAFSLVLGQHISVPVALGAVFLMGVLFTIISATGIRSWILRNLPQGVAHGTGIGIGLFLLLIAANGVGLVIKNPLDGLPVALGDFDTFPVIMSLIGLAVIIGLEKLKVPGGILLTIIGISVVGLIFDPAVHFSGIFAMPSLSDENGNSLIGSLDIMGALNPIVLPSVLALVMTAVFDATGTIRAVAGQANLLDKDGQIIDGGKALTTDSLSSVFSGLVGAAPAAVYIESAAGTAAGGKTGLTAITVGVLFLLILFLSPLSYLVPVYATAPALMYVGLLMLSNVAKIDFADFVDAMAGLVTAVFIVLTCNIVTGIMIGFATLVIGRIVSGEWRKLNIGTVVIAIALVAFYAGGWAI
>NZ_AP022378.1|WP_003826630.1|4604731_4605190_-|redox-sensitive-transcriptional-activator-SoxR
MEKKLPRIKALLTPGEVAKRSGVAVSTLHFYESKGLISSMRNSGNQRRYKRDVLRYVAIIKIAQRIGIPLATIGDALGVLPEGHSLSAKEWKQLSSQWREELDRRIHTLVALRDELDGCIGCGCLSRSDCPLRNPGDQLGEQGTGARLLEDD
>NZ_AP022378.1|WP_003031731.1|4605276_4605600_+|superoxide-response-transcriptional-regulator-SoxS
MSHQQIIQTLIEWIDEHIDQPLNIEAVAKKSGYSKWYLQRMFRTVTRQTLGDYIRQRRLLLAAVELRTTERPIFDIAMDLGYVSQQTFSRVFRREFDRTPSDYRHRL
>NZ_AP022378.1|WP_003826627.1|4605602_4607189_-|EAL-domain-containing-protein
MNHRARRKLLKFLGTFMVVLFPVVLAIWFAHIRAMTETHSQLRSFAQLVLNKTELVILQADLARDMAQLYQGKMCTPAHQKSMLNIIRGRLYISELIYAQGDHFLCSTSMAPPVTYIMPTADYKRTPDISIYYYRDTPFFAGYRMTYMQRGNYVAVINPLSYSEVMSDDPDLSWGVYDTVTDTFFSASEAANIAQFAPLIRGEASTFQQDDRFYTIVHSEKRPIAIIVSTSDNRVSQIFYHEAALTIPFGIICSILILLMWWRTRQEYLSPRRLLKRAIKKRQLCLHYQPIIDIKNGQCVGAEALLRWPGCKGEVMSPTEFIPLAEKEGMIERITDYVVEEVFNDLGYFLSAHPQLSISINLSASDFHSSRLIALINDKNREYSVAAQQIKVEVTERGFIDVHKMTPVIQAFRKAGYEVAFDDFGTGYSNLHNLSALNVDILKIDKSFISTLSTNSTSHLIAEHIIEMAQSLHLKTIAEGVETKEQIEWLLERGVQYCQGWYFAKALPPQEFMHWIQRSPAILTQSGQ
>NZ_AP022378.1|WP_003826625.1|4607741_4608023_+|YjcB-family-protein
MATITTGVVLLRWQLLSAVLMFLASTLNIRFRKSDYIGLAVISSGLGLVFACWFATGLLGITLVDMSAIWKNIETVMVDVMSHTPPDWPMVLN
>NZ_AP022378.1|WP_003826621.1|4608089_4608614_-|single-stranded-DNA-binding-protein-SSB1
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYIEGQLRTRKWTDQSGVEKYTTEVVVNVGGTMQMLGGRQGGGAPAGGGQQQGGWGQPQQPQGGNQFSGGAQSRPQQSAPAAPSNEPPMDFDDDIPF
>NZ_AP022378.1|WP_164563238.1|4608865_4611688_+|excinuclease-ABC-subunit-UvrA
MDKIEVRGARTHNLKNINLVIPRDKLIVVTGLSGSGKSSLAFDTLYAEGQRRYVESLSAYARQFLSLMEKPDVDHIEGLSPAISIEQKSTSHNPRSTVGTITEIHDYLRLLFARVGEPRCPDHDVPLAAQTVSQMVDNVLSQPEGKRLMLLAPVIKERKGEHTKTLENLAGQGYIRARIDGEVCDLSDPPKLELQKKHTIEVVIDRFKVRDDLTQRLAESFETALELSGGTAVVADMDDPKAEELLFSANFACPICGYSMRELEPRLFSFNNPAGACPTCDGLGVQQYFDPDRVIQNPELSLAGGAIRGWDRRNFYYFQMLKSLAEHYKFDVEAPWACLNPAVHKVVLYGSGKENIEFKYMNDRGDTSVRRHPFEGVLHNMERRYKETESSAVREELAKFISNRPCASCEGTRLRREARHVFVENTPLPAISDMSIGHAMDFFNNLKLAGQRAKIAEKILKEIGDRLKFLVNVGLNYLTLSRSAETLSGGEAQRIRLASQIGAGLVGVMYVLDEPSIGLHQRDNERLLGTLIHLRNLGNTVIVVEHDEDAIRAADHVIDIGPGAGVHGGQVVAEGTLKDIMAVPESLTGQYMSGKRKIEVPKQRVAADPEKVLKLTGARGNNLKDVTLTLPVGLFTCITGVSGSGKSTLINDTLFPIAQTALNGATLAEPAPYRDVQGLEHFDKVIDIDQSPIGRTPRSNPATYTGVFTPVRELFAGVPESRARGYTPGRFSFNVRGGRCEACQGDGVIKVEMHFLPDIYVPCDQCKGKRYNRETLEIKYKGKTIHEVLDMTIEEAREFFDAVPALARKLQTLMDVGLTYIRLGQSATTLSGGEAQRVKLARELSKRGTGQTLYILDEPTTGLHFADIQQLLDVLHQLRDQGNTIVVIEHNLDVIKTADWIVDLGPEGGSGGGEILVSGTPETVAECEASHTARFLKPLL
>NZ_AP022378.1|WP_008786927.1|4612070_4612427_-|MmcQ/YjbR-family-DNA-binding-protein
MTNSELLQYCMAKTGAEQSVHSDWKATQIKVEDVLFAMVKEVEERPAVSLKTSPELAELLRQQHSDVRPSRHLNKAHWSTVYLDGSLPDSQIYYLVDASYQQAVNTLPEDKRRILTQP
>NZ_AP022378.1|WP_126957369.1|4612554_4613268_-|acid-phosphatase-AphA
MRKFTLALSAVCLLFTLNQPAQALVSSPSQLNPGTNVAKLAEQAPIHWVSVAQIENSLTGRPPMAVGFDIDDTVLFSSPGFWRGKKTYSPDSEDYLKNPAFWEKMNNGWDEFSIPKEVARQLIDMHVRRGDSIFFVTGRSQTKTETVSKTLSDNFHIPAGNMNPVIFAGDKPGQNTKMQWLQDKNIRMFYGDSDNDITAARDVGIRGIRILRASNSTYKPLPQAGAFGEEVIVNSEY

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_AP022378_3	3.1\|2231243\|29\|NZ_AP022378\|CRISPRCasFinder	2231243-2231271	29	NZ_CP022520	Pantoea vagans strain FBS135 plasmid pPant4, complete sequence	362-390	7	0.759
NZ_AP022378_1	1.1\|303595\|33\|NZ_AP022378\|CRISPRCasFinder	303595-303627	33	NZ_CP049319	Caballeronia sp. SBC2 plasmid pSBC2-3, complete sequence	777677-777709	11	0.667

1. spacer 3.1|2231243|29|NZ_AP022378|CRISPRCasFinder matches to NZ_CP022520 (Pantoea vagans strain FBS135 plasmid pPant4, complete sequence) position: , mismatch: 7, identity: 0.759

gcagacaaatagcgggcacgtatcgagtt	CRISPR spacer
acagaccaatagcgggcacgtatgcgggc	Protospacer
.***** ****************  .* .

2. spacer 1.1|303595|33|NZ_AP022378|CRISPRCasFinder matches to NZ_CP049319 (Caballeronia sp. SBC2 plasmid pSBC2-3, complete sequence) position: , mismatch: 11, identity: 0.667

tatttttgcgcgaacgcgcggtatcaaatgatt	CRISPR spacer
cgcaaaagcgcgaacgcccggtctcaaatgacc	Protospacer
...    ********** **** ********..

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

271590 : 306017

Vibrio_phage(65.71%)

head,transposase,tail,plate

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_164563296.1\|271590_273036_-	fructuronate reductase	H8ZJP8	Ostreococcus_tauri_virus	4.1e-45	31.1
WP_175310230.1\|273327_273972_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_109862726.1\|274142_274373_+	helix-turn-helix domain-containing protein	M1PVU4	Vibrio_phage	2.5e-13	54.8
WP_164562392.1\|274377_276459_+\|transposase	Mu transposase C-terminal domain-containing protein	A0A2D1GNK9	Pseudomonas_phage	8.2e-180	49.3
WP_046275139.1\|276497_277445_+	AAA family ATPase	A0A0C4UQR3	Shigella_phage	6.0e-138	78.5
WP_097471204.1\|277447_277687_+	hypothetical protein	NA	NA	NA	NA
WP_097471205.1\|277689_277977_+	hypothetical protein	NA	NA	NA	NA
WP_097471227.1\|277999_278617_+	DUF3164 family protein	A0A2I7S9B0	Vibrio_phage	4.3e-68	61.5
WP_046275143.1\|278702_279194_+	hypothetical protein	A0A0A7RUP4	Clostridium_phage	5.3e-05	35.7
WP_046275144.1\|279183_279732_+	regulatory protein GemA	A0A0C4UQU3	Shigella_phage	6.3e-39	49.4
WP_164562393.1\|279728_280121_+	transcriptional regulator	A0A0C4UR27	Shigella_phage	3.9e-35	60.2
WP_164562394.1\|280126_280450_+	hypothetical protein	NA	NA	NA	NA
WP_164562395.1\|280546_281128_+	peptidoglycan-binding protein	A0A2I7S9B9	Vibrio_phage	1.9e-38	47.2
WP_164562396.1\|281130_281349_+	hypothetical protein	A0A0C4UQR6	Shigella_phage	1.7e-24	69.4
WP_164562397.1\|281341_281749_+	hypothetical protein	NA	NA	NA	NA
WP_046275150.1\|281736_282342_+	hypothetical protein	NA	NA	NA	NA
WP_046275151.1\|282338_282569_+	TraR/DksA C4-type zinc finger protein	NA	NA	NA	NA
WP_097471209.1\|282549_282852_+	DUF2730 family protein	M1Q558	Vibrio_phage	5.6e-13	39.4
WP_046275180.1\|282863_283151_+	hypothetical protein	A0A0C4UR00	Shigella_phage	6.0e-25	58.5
WP_046275153.1\|283153_283429_+	hypothetical protein	NA	NA	NA	NA
WP_046275154.1\|283418_284000_+	DUF3486 family protein	M4MCR3	Vibrio_phage	9.9e-51	57.1
WP_164562398.1\|283996_285589_+	hypothetical protein	M4MHG0	Vibrio_phage	4.8e-204	69.7
WP_164562399.1\|285588_287163_+	DUF935 family protein	A0A2I7S9K0	Vibrio_phage	5.6e-157	54.8
WP_164562400.1\|287152_287995_+	hypothetical protein	M4M9M5	Vibrio_phage	3.3e-87	56.4
WP_164562401.1\|288202_289174_+	peptidase	M1Q578	Vibrio_phage	7.2e-78	49.8
WP_164562402.1\|289173_290070_+\|head	Mu-like prophage major head subunit gpT family protein	M4MB71	Vibrio_phage	2.3e-94	58.6
WP_164562403.1\|290154_290631_+	hypothetical protein	NA	NA	NA	NA
WP_164562404.1\|290630_291071_+	DUF1320 family protein	A0A2I7S9E9	Vibrio_phage	5.2e-36	50.0
WP_161623357.1\|291070_291613_+	phage virion morphogenesis protein	A0A2I7S9D7	Vibrio_phage	1.2e-58	62.6
WP_164562405.1\|291609_292212_+	hypothetical protein	M4MHF0	Vibrio_phage	2.1e-35	39.2
WP_046275164.1\|292208_292406_+	DUF2635 domain-containing protein	NA	NA	NA	NA
WP_164562406.1\|292408_293887_+\|tail	phage tail sheath subtilisin-like domain-containing protein	M1Q565	Vibrio_phage	2.1e-158	57.7
WP_164562407.1\|293896_294253_+\|tail	phage tail tube protein	A0A2I7S9D5	Vibrio_phage	1.6e-19	39.0
WP_046275167.1\|294256_294640_+\|tail	phage tail assembly protein	M4MB64	Vibrio_phage	1.0e-19	46.7
WP_164562408.1\|294738_296526_+\|tail	phage tail tape measure protein	M4MHE6	Vibrio_phage	6.4e-56	29.8
WP_164562409.1\|296525_297794_+	DNA circularization N-terminal domain-containing protein	A0A2I7S9E8	Vibrio_phage	6.5e-79	39.5
WP_164562410.1\|297793_298897_+\|tail	phage tail protein	M4M9L5	Vibrio_phage	1.0e-88	47.7
WP_164562411.1\|298887_299430_+\|plate	phage baseplate assembly protein V	A0A2I7S9F6	Vibrio_phage	1.0e-28	40.7
WP_164562412.1\|299426_299879_+	phage GP46 family protein	A0A2I7S9F0	Vibrio_phage	3.1e-23	46.1
WP_164562413.1\|299868_300945_+\|plate	baseplate J/gp47 family protein	M4MHE1	Vibrio_phage	3.5e-102	54.9
WP_164562414.1\|300929_301505_+	DUF2313 domain-containing protein	M1NVS6	Vibrio_phage	1.6e-53	49.7
WP_175310231.1\|301516_302401_+	hypothetical protein	A0A1B0V7G4	Salmonella_phage	2.8e-12	44.0
WP_164562415.1\|302400_302808_+\|tail	tail fiber assembly protein	A0A0M4S6V4	Salmonella_phage	2.6e-13	40.4
WP_164562416.1\|302957_303527_+	recombinase family protein	K7PJT4	Enterobacteria_phage	1.1e-70	70.3
WP_003827479.1\|303789_304971_-	mannonate dehydratase	NA	NA	NA	NA
WP_003827481.1\|304991_306017_-	alcohol dehydrogenase catalytic domain-containing protein	A0A2K9L7I1	Tupanvirus	2.3e-10	23.6

DBSCAN-SWA_2

1624099 : 1756744

106

Escherichia_phage(20.69%)

lysis,tRNA,protease,transposase,integrase

attL 1664847:1664906|attR 1678492:1679312

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_032934607.1\|1624099_1624597_-\|protease	serine protease inhibitor ecotin	NA	NA	NA	NA
WP_063940544.1\|1625010_1625502_+	ferredoxin-type protein NapF	NA	NA	NA	NA
WP_003027560.1\|1625491_1625755_+	chaperone NapD	NA	NA	NA	NA
WP_063940543.1\|1625751_1628238_+	nitrate reductase catalytic subunit NapA	NA	NA	NA	NA
WP_003834629.1\|1628244_1628940_+	ferredoxin-type protein NapG	NA	NA	NA	NA
WP_003027552.1\|1628926_1629790_+	quinol dehydrogenase ferredoxin subunit NapH	NA	NA	NA	NA
WP_164562577.1\|1629786_1630236_+	nitrate reductase cytochrome c-type subunit	NA	NA	NA	NA
WP_003027548.1\|1630245_1630848_+	cytochrome c-type protein NapC	NA	NA	NA	NA
WP_003834625.1\|1630868_1631489_+	cytochrome c biogenesis heme-transporting ATPase CcmA	G3M9Y6	Bacillus_virus	1.7e-11	25.0
WP_003027542.1\|1631485_1632145_+	heme exporter protein CcmB	NA	NA	NA	NA
WP_003027538.1\|1632221_1632959_+	heme ABC transporter permease	NA	NA	NA	NA
WP_020996676.1\|1632955_1633168_+	heme exporter protein CcmD	NA	NA	NA	NA
WP_003834619.1\|1633164_1633644_+	cytochrome c maturation protein CcmE	NA	NA	NA	NA
WP_063940542.1\|1633640_1635596_+	heme lyase CcmF/NrfE family subunit	NA	NA	NA	NA
WP_003834613.1\|1635592_1636150_+	thiol:disulfide interchange protein DsbE	NA	NA	NA	NA
WP_164562578.1\|1636146_1637196_+	cytochrome c-type biogenesis protein CcmH	NA	NA	NA	NA
WP_003834605.1\|1637292_1637940_-	nitrate/nitrite response regulator protein NarP	NA	NA	NA	NA
WP_003834602.1\|1638417_1638915_-	type VI secretion system tube protein Hcp	NA	NA	NA	NA
WP_164562579.1\|1638917_1639250_-	hypothetical protein	NA	NA	NA	NA
WP_003834597.1\|1639246_1639810_-	hypothetical protein	NA	NA	NA	NA
WP_003834595.1\|1640682_1642443_-	DUF3413 domain-containing protein	NA	NA	NA	NA
WP_003027506.1\|1642474_1642702_-	YejL family protein	NA	NA	NA	NA
WP_003027504.1\|1642836_1643844_+	nucleoid-associated protein YejK	A0A1V0E8C0	Vibrio_phage	1.0e-82	47.6
WP_003027502.1\|1643963_1644248_-	50S ribosomal protein L25	NA	NA	NA	NA
WP_164562580.1\|1644372_1646133_-	DEAD/DEAH box helicase family protein	M4Q3N1	Vibrio_phage	7.1e-100	41.6
WP_003834586.1\|1646284_1646992_+	16S rRNA pseudouridine(516) synthase RsuA	NA	NA	NA	NA
WP_003834584.1\|1647007_1648198_+	Bcr/CflA family multidrug efflux MFS transporter	S4TR35	Salmonella_phage	1.4e-19	22.4
WP_085951589.1\|1648531_1648876_+	hypothetical protein	NA	NA	NA	NA
WP_164562581.1\|1648879_1650469_-	microcin C ABC transporter ATP-binding protein YejF	G9BWD6	Planktothrix_phage	1.6e-18	32.4
WP_164562582.1\|1650470_1651496_-	ABC transporter permease subunit	NA	NA	NA	NA
WP_164562583.1\|1651495_1652590_-	microcin C ABC transporter permease YejB	NA	NA	NA	NA
WP_164562584.1\|1652590_1654405_-	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_164562585.1\|1654505_1656065_-	cyclic di-GMP phosphodiesterase	NA	NA	NA	NA
WP_003834567.1\|1656232_1656802_-	bifunctional murein DD-endopeptidase/murein LD-carboxypeptidase	S5MM68	Bacillus_phage	2.3e-12	37.6
WP_063940535.1\|1657215_1657929_-	phosphatase PAP2 family protein	NA	NA	NA	NA
WP_164562586.1\|1657962_1658949_-	GTP-binding protein	NA	NA	NA	NA
WP_149335135.1\|1659068_1660535_-	fructuronate reductase	H8ZJP8	Ostreococcus_tauri_virus	5.8e-39	29.8
1664847:1664906	attL	NA	NA	NA	NA
WP_001067855.1\|1664898_1665603_-\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
WP_078310596.1\|1665863_1666061_+\|integrase,transposase	DDE-type integrase/transposase/recombinase	Q716C2	Shigella_phage	1.2e-11	57.4
WP_013851373.1\|1666424_1667066_-	tetracycline resistance transcriptional repressor TetR	NA	NA	NA	NA
WP_031942321.1\|1667193_1668393_+	tetracycline efflux MFS transporter Tet(A)	A0A2H4UVM2	Bodo_saltans_virus	8.2e-07	22.4
WP_013851371.1\|1668907_1669411_+	shikimate dehydrogenase	NA	NA	NA	NA
WP_001067855.1\|1669447_1670152_+\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
WP_071886840.1\|1670210_1670678_+	restriction endonuclease	NA	NA	NA	NA
WP_001749967.1\|1670682_1670889_+	hypothetical protein	NA	NA	NA	NA
WP_072094655.1\|1671300_1672704_+	DNA cytosine methyltransferase	E5E3X6	Burkholderia_phage	9.0e-106	50.6
WP_004098817.1\|1672737_1673952_-	type II site-specific deoxyribonuclease	E5E3X4	Burkholderia_phage	1.2e-34	42.5
WP_001389365.1\|1674212_1674977_-\|transposase	IS6-like element IS6100 family transposase	A0A077SL39	Escherichia_phage	4.3e-86	65.7
WP_001144737.1\|1675119_1675386_-	plasmid mobilization relaxosome protein MobC	NA	NA	NA	NA
WP_004201280.1\|1675606_1676080_-	trimethoprim-resistant dihydrofolate reductase DfrA14	A0A140HLG8	Bacillus_phage	5.3e-18	33.8
WP_000845039.1\|1676235_1677249_+\|integrase	class 1 integron integrase IntI1	A0A1P8DJJ6	Virus_Rctr41k	1.0e-71	45.5
WP_001067855.1\|1677794_1678499_+\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
WP_014386481.1\|1679371_1680016_-	quinolone resistance pentapeptide repeat protein QnrB1	NA	NA	NA	NA
1678492:1679312	attR	NA	NA	NA	NA
WP_004199413.1\|1680588_1683606_-\|transposase	Tn3-like element IS3000 family transposase	NA	NA	NA	NA
WP_001334766.1\|1686014_1686845_+	oxacillin-hydrolyzing class D beta-lactamase OXA-1	NA	NA	NA	NA
WP_002063889.1\|1689154_1689697_+	AAA family ATPase	NA	NA	NA	NA
WP_151295361.1\|1690909_1691593_-\|transposase	IS6 family transposase	A0A077SL39	Escherichia_phage	4.6e-132	100.0
WP_142437948.1\|1693910_1694243_+	cupin fold metalloprotein, WbuC family	NA	NA	NA	NA
WP_000608644.1\|1695419_1696682_-\|transposase	IS1380-like element ISEc9 family transposase	A0A1B0VDR3	Salmonella_phage	1.3e-39	100.0
WP_001143771.1\|1696862_1697081_-	DUF4158 domain-containing protein	Q1MVP5	Enterobacteria_phage	4.4e-36	100.0
WP_001235713.1\|1697244_1697802_+	recombinase family protein	Q1MVP4	Enterobacteria_phage	7.0e-94	100.0
WP_000027057.1\|1697984_1698845_+	class A broad-spectrum beta-lactamase TEM-1	Q1MVP3	Enterobacteria_phage	4.6e-161	100.0
WP_000480968.1\|1699565_1700402_-	aminoglycoside O-phosphotransferase APH(6)-Id	NA	NA	NA	NA
WP_001082319.1\|1700401_1701205_-	aminoglycoside O-phosphotransferase APH(3'')-Ib	Q75ZG1	Hepacivirus	4.9e-24	34.3
WP_001043260.1\|1701265_1702081_-	sulfonamide-resistant dihydropteroate synthase Sul2	NA	NA	NA	NA
WP_000954592.1\|1702410_1702587_+	DUF4102 domain-containing protein	T1S9J3	Salmonella_phage	1.0e-06	68.6
WP_164562587.1\|1702797_1703772_-\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_124036660.1\|1705668_1706364_-\|transposase	IS6 family transposase	A0A077SL39	Escherichia_phage	6.2e-132	100.0
WP_164562588.1\|1715343_1716816_-	aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA
WP_164562589.1\|1716980_1718114_+	pentaheme c-type cytochrome TorC	NA	NA	NA	NA
WP_164562590.1\|1718123_1720622_+	trimethylamine-N-oxide reductase TorA	NA	NA	NA	NA
WP_164562591.1\|1720611_1721244_+	molecular chaperone TorD	NA	NA	NA	NA
WP_003027452.1\|1721299_1721872_-	elongation factor P-like protein YeiP	NA	NA	NA	NA
WP_081364641.1\|1722029_1722284_+	YkgJ family cysteine cluster protein	NA	NA	NA	NA
WP_003834548.1\|1722280_1723462_-	sugar efflux transporter SetB	NA	NA	NA	NA
WP_175310228.1\|1723564_1723810_-	hypothetical protein	NA	NA	NA	NA
WP_003834546.1\|1723830_1724961_+	fused PTS fructose transporter subunit IIA/HPr protein	NA	NA	NA	NA
WP_003834544.1\|1724960_1725899_+	1-phosphofructokinase	NA	NA	NA	NA
WP_003834542.1\|1725915_1727604_+	PTS fructose transporter subunit IIBC	NA	NA	NA	NA
WP_063940523.1\|1727710_1729009_-	anaerobic C4-dicarboxylate transporter	NA	NA	NA	NA
WP_020996671.1\|1729084_1729804_-	amino acid racemase	NA	NA	NA	NA
WP_020996669.1\|1730156_1731068_+	hypochlorite stress DNA-binding transcriptional regulator HypT	NA	NA	NA	NA
WP_003834523.1\|1731100_1731958_-	deoxyribonuclease IV	A0A1V0SBL9	Catovirus	4.4e-23	33.3
WP_003834521.1\|1732029_1733079_-	YeiH family protein	NA	NA	NA	NA
WP_003834519.1\|1733323_1734205_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_003834517.1\|1734400_1735870_+	lysine-specific permease	NA	NA	NA	NA
WP_003834514.1\|1735935_1737921_-	ligand-gated channel protein	A0A0P0I887	Acinetobacter_phage	4.5e-10	32.6
WP_003834512.1\|1738200_1739037_-	S-formylglutathione hydrolase	NA	NA	NA	NA
WP_003027410.1\|1739359_1740028_+	GTP cyclohydrolase I FolE	M1Q6X8	Cellulophaga_phage	4.1e-56	56.8
WP_164562592.1\|1740042_1741200_+	DUF418 domain-containing protein	NA	NA	NA	NA
WP_003834506.1\|1741344_1742370_+	HTH-type transcriptional regulator GalS	NA	NA	NA	NA
WP_003027399.1\|1742663_1743662_+	galactose/glucose ABC transporter substrate-binding protein MglB	NA	NA	NA	NA
WP_003027396.1\|1743733_1745254_+	galactose/methyl galactoside ABC transporter ATP-binding protein MglA	F2Y2R6	Organic_Lake_phycodnavirus	3.4e-10	32.8
WP_003027393.1\|1745269_1746280_+	galactose/methyl galactoside ABC transporter permease MglC	NA	NA	NA	NA
WP_003834502.1\|1746331_1746571_-	DUF2542 family protein	NA	NA	NA	NA
WP_003027383.1\|1746573_1747293_-	outer membrane permeability protein SanA	NA	NA	NA	NA
WP_164562593.1\|1747456_1748341_-	cytidine deaminase	NA	NA	NA	NA
WP_003027380.1\|1748489_1749185_-\|lysis	CidB/LrgB family autolysis modulator	NA	NA	NA	NA
WP_003834497.1\|1749181_1749586_-	CidA/LrgA family protein	NA	NA	NA	NA
WP_164562594.1\|1749717_1750626_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_003834494.1\|1750752_1752111_+	aromatic acid/H+ symport family MFS transporter	NA	NA	NA	NA
WP_003834492.1\|1752122_1753160_+	gentisate 1,2-dioxygenase	NA	NA	NA	NA
WP_003834490.1\|1753175_1753877_+	fumarylacetoacetate hydrolase family protein	NA	NA	NA	NA
WP_003834489.1\|1753885_1754530_+	maleylacetoacetate isomerase	NA	NA	NA	NA
WP_063940515.1\|1754544_1755738_+	3-hydroxybenzoate 6-monooxygenase	NA	NA	NA	NA
WP_003834483.1\|1755799_1756744_+\|tRNA	tRNA dihydrouridine(16) synthase DusC	NA	NA	NA	NA

DBSCAN-SWA_3

1768573 : 1777200

Enterobacteria_phage(66.67%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_003834466.1\|1768573_1769521_+	ABC transporter ATP-binding protein	F2Y1V5	Organic_Lake_phycodnavirus	1.7e-07	25.3
WP_003834464.1\|1769504_1770236_+	ABC transporter permease	NA	NA	NA	NA
WP_003027354.1\|1770216_1770324_-	protein YohO	NA	NA	NA	NA
WP_003027351.1\|1770583_1771315_-	HTH-type transcriptional regulator MlrA	Q9EYF2	Enterobacteria_phage	1.0e-105	93.5
WP_003834458.1\|1771540_1773226_+	sensor histidine kinase	Q9EYF3	Enterobacteria_phage	6.7e-281	91.6
WP_003834456.1\|1773222_1773942_+	two-component system response regulator BtsR	NA	NA	NA	NA
WP_003834454.1\|1773988_1774459_+	DUF1456 family protein	Q9EYF4	Enterobacteria_phage	1.8e-63	77.4
WP_003834453.1\|1774502_1774961_-	YehR family lipoprotein	Q9EYF5	Enterobacteria_phage	1.6e-51	69.3
WP_164562595.1\|1775166_1777200_-\|tRNA	methionine--tRNA ligase	A0A1V0SDF2	Indivirus	5.2e-54	27.6

DBSCAN-SWA_4

1815614 : 1825182

Bacillus_phage(28.57%)

protease,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_003834285.1\|1815614_1817561_+	macrolide ABC transporter ATP-binding protein/permease MacB	G9BWD6	Planktothrix_phage	1.4e-40	41.8
WP_003834283.1\|1817635_1817860_-	cold shock-like protein CspD	A0A2H4N7Y6	Lake_Baikal_phage	3.6e-17	62.7
WP_003036810.1\|1818182_1818503_+\|protease	ATP-dependent Clp protease adapter ClpS	A0A1B1IT64	uncultured_Mediterranean_phage	3.5e-13	45.7
WP_003036804.1\|1818533_1820810_+\|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	A0A223W0B1	Agrobacterium_phage	1.4e-164	42.1
WP_003834280.1\|1821078_1822440_-\|tRNA	tRNA 5-hydroxyuridine modification protein YegQ	Q6DW11	Phage_TP	1.8e-204	92.9
WP_003834279.1\|1822599_1822932_-	YegP family protein	NA	NA	NA	NA
WP_164562605.1\|1823059_1823782_-	two-component system response regulator BaeR	W8CYM9	Bacillus_phage	9.2e-30	32.7
WP_003834277.1\|1823778_1825182_-	two-component system sensor histidine kinase BaeS	W8CYF6	Bacillus_phage	2.3e-32	29.2

DBSCAN-SWA_5

1867023 : 1875196

Enterobacteria_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_164562620.1\|1867023_1868418_+	colanic acid biosynthesis protein WcaM	A0A291LBB9	Klebsiella_phage	2.8e-22	34.2
WP_125112554.1\|1868583_1869477_+	GalU regulator GalF	A0A127AW70	Bacillus_phage	1.6e-44	39.7
WP_125112553.1\|1869846_1870932_+	dTDP-glucose 4,6-dehydratase	I7HTA3	Enterobacteria_phage	7.4e-100	53.6
WP_125112552.1\|1870931_1871831_+	dTDP-4-dehydrorhamnose reductase	A0A140G5S3	Enterobacteria_phage	2.6e-29	34.6
WP_125112551.1\|1871881_1872748_+	glucose-1-phosphate thymidylyltransferase RfbA	I7I009	Enterobacteria_phage	1.0e-104	63.4
WP_125112550.1\|1872858_1874088_+	flippase	NA	NA	NA	NA
WP_125112549.1\|1874101_1875196_+	UDP-galactopyranose mutase	E4ZFQ1	Streptococcus_phage	2.3e-133	62.0

DBSCAN-SWA_6

2079843 : 2088753

Organic_Lake_phycodnavirus(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_175310235.1\|2079843_2081898_+	oligopeptidase B	F2Y2Z7	Organic_Lake_phycodnavirus	6.2e-31	36.3
WP_164562673.1\|2081888_2082551_-	exodeoxyribonuclease X	Q6UAU3	Klebsiella_phage	5.3e-08	32.4
WP_063940873.1\|2082574_2083231_-	carbon-nitrogen hydrolase family protein	NA	NA	NA	NA
WP_003034925.1\|2083337_2083568_-	DNA polymerase III subunit theta	H9C187	Pectobacterium_phage	1.0e-14	60.3
WP_019076528.1\|2083716_2085468_+	recombinase family protein	Q3HQV4	Burkholderia_phage	7.2e-44	33.3
WP_164563304.1\|2085912_2086635_+	inovirus-type Gp2 protein	NA	NA	NA	NA
WP_115601972.1\|2086918_2087497_-	recombinase family protein	A0A1S5Y2X8	uncultured_archaeal_virus	1.1e-17	37.7
WP_003844140.1\|2087850_2088753_-	diguanylate cyclase	A0A127AWB9	Bacillus_phage	5.5e-16	34.0

DBSCAN-SWA_7

2249639 : 2364209

122

Escherichia_phage(34.38%)

coat,transposase,tail,terminase,integrase

attL 2300612:2300671|attR 2350093:2350912

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_003833361.1\|2249639_2250476_+	ion transporter	A0A1B0Y2S3	Lactobacillus_phage	1.4e-08	40.0
WP_003020691.1\|2250513_2250843_-	YciU family protein	NA	NA	NA	NA
WP_003833359.1\|2250877_2252338_-	cardiolipin synthase	NA	NA	NA	NA
WP_003020684.1\|2252480_2252654_+	YciY family protein	NA	NA	NA	NA
WP_164562695.1\|2252909_2254103_+\|integrase	tyrosine-type recombinase/integrase	K7PGY1	Enterobacteria_phage	6.7e-203	84.4
WP_008322518.1\|2254095_2254296_-	hypothetical protein	K7PM28	Enterobacteria_phage	1.9e-25	82.5
WP_164562696.1\|2254341_2254584_-	DUF4060 family protein	K7PHF4	Enterobacteria_phage	4.3e-32	87.3
WP_164562697.1\|2254623_2255715_-	recombinase RecT	K7P7N5	Enterobacteria_phage	7.0e-114	58.8
WP_164562698.1\|2255727_2258580_-	PD-(D/E)XK nuclease-like domain-containing protein	K7P6V4	Enterobacteria_phage	1.6e-279	58.5
WP_164562699.1\|2258719_2258881_-	hypothetical protein	K7PGY4	Enterobacteria_phage	1.3e-21	92.5
WP_016156718.1\|2258892_2259099_-	hypothetical protein	K7P6H3	Enterobacteria_phage	1.6e-32	98.5
WP_019076927.1\|2259426_2259651_+	hypothetical protein	K7P7I0	Enterobacteria_phage	1.2e-15	64.7
WP_065554613.1\|2259681_2260443_-	KilA-N domain-containing protein	A0A1L2BWW1	Bacteriophage	8.5e-10	46.3
WP_047418097.1\|2260511_2261267_-	helix-turn-helix transcriptional regulator	A0A2I6PIE7	Escherichia_phage	1.1e-70	54.3
WP_019076923.1\|2261302_2261530_+	hypothetical protein	A0A2I6PIE5	Escherichia_phage	2.4e-16	56.3
WP_060643426.1\|2261561_2262101_+	regulator	K7PJT7	Enterobacteria_phage	1.0e-78	84.4
WP_008322485.1\|2262268_2263216_+	phage protein	G9L6A8	Escherichia_phage	6.4e-23	30.1
WP_054528491.1\|2263218_2263968_+	ATP-binding protein	S4TNF5	Salmonella_phage	2.5e-123	87.1
WP_164562700.1\|2263986_2264298_+	hypothetical protein	NA	NA	NA	NA
WP_164562701.1\|2264674_2265058_+	ead/Ea22-like family protein	K7PJQ4	Enterobacteria_phage	3.0e-11	46.0
WP_164562702.1\|2265261_2265549_+	hypothetical protein	A0A1I9LJM1	Stx_converting_phage	4.0e-37	78.9
WP_171859136.1\|2265861_2266401_+	DUF551 domain-containing protein	K7P7E4	Enterobacteria_phage	2.8e-39	56.5
WP_016156704.1\|2266629_2266887_+	hypothetical protein	NA	NA	NA	NA
WP_175310237.1\|2268961_2269144_+	hypothetical protein	NA	NA	NA	NA
WP_164562703.1\|2269143_2269317_+	hypothetical protein	G8C7V1	Escherichia_phage	3.8e-06	52.8
WP_175310238.1\|2269336_2269843_+	hypothetical protein	NA	NA	NA	NA
WP_057064565.1\|2270017_2270218_+	hypothetical protein	NA	NA	NA	NA
WP_164562705.1\|2270318_2270921_+	DUF1367 family protein	A0A0M4QX23	Salmonella_phage	1.2e-104	92.5
WP_164562706.1\|2270920_2271127_+	hypothetical protein	K7PJT9	Enterobacteria_phage	8.7e-26	78.8
WP_164562707.1\|2271129_2271738_+	recombination protein NinG	A0A0M4RU10	Salmonella_phage	1.3e-48	67.2
WP_164562708.1\|2271870_2272653_+	antitermination protein	K7PKS8	Enterobacteria_phage	1.3e-114	76.1
WP_016150024.1\|2273086_2273365_+	hypothetical protein	K7PGZ9	Enterobacteria_phage	5.1e-45	97.8
WP_175310254.1\|2273342_2273909_+	lysozyme	K7P7Q3	Enterobacteria_phage	5.6e-99	92.6
WP_164562710.1\|2273908_2274427_+	DUF2514 family protein	NA	NA	NA	NA
WP_164562711.1\|2274456_2274681_+	hypothetical protein	A0A2H4J182	uncultured_Caudovirales_phage	1.1e-18	57.5
WP_164562712.1\|2275186_2275657_-	hypothetical protein	NA	NA	NA	NA
WP_164562713.1\|2275679_2276252_+\|terminase	terminase small subunit	I6PDJ6	Cronobacter_phage	1.3e-66	83.2
WP_164562714.1\|2276248_2277820_+\|terminase	terminase	G8C7P3	Escherichia_phage	3.9e-307	92.7
WP_164562715.1\|2277824_2279228_+	DUF4055 domain-containing protein	G8C7P4	Escherichia_phage	3.3e-241	89.4
WP_164562716.1\|2279229_2280336_+	hypothetical protein	G8C7P5	Escherichia_phage	2.7e-190	90.5
WP_158513308.1\|2280338_2280482_+	hypothetical protein	NA	NA	NA	NA
WP_164562717.1\|2280607_2281360_+	hypothetical protein	G8C7P6	Escherichia_phage	2.2e-106	80.8
WP_126957528.1\|2281377_2282517_+\|coat	P22 coat - protein 5 family protein	G8C7P7	Escherichia_phage	1.5e-175	84.8
WP_164562718.1\|2282556_2282742_+	hypothetical protein	G8C7P8	Escherichia_phage	1.2e-26	95.1
WP_164562719.1\|2282744_2283227_+	hypothetical protein	G8C7P9	Escherichia_phage	3.5e-78	87.5
WP_164562720.1\|2283228_2283582_+	hypothetical protein	G8C7Q0	Escherichia_phage	6.4e-53	90.5
WP_164562721.1\|2283583_2284183_+	hypothetical protein	G8C7Q1	Escherichia_phage	1.9e-97	87.4
WP_038641028.1\|2284172_2284622_+	DUF4128 domain-containing protein	G8C7Q2	Escherichia_phage	6.3e-61	76.5
WP_164562722.1\|2284668_2285601_+	immunoglobulin domain-containing protein	G8C7Q3	Escherichia_phage	7.0e-155	91.3
WP_164562723.1\|2285642_2285981_+	hypothetical protein	G8C7Q5	Escherichia_phage	2.6e-51	88.4
WP_164562724.1\|2285998_2286286_+	DUF1799 domain-containing protein	I6PD79	Cronobacter_phage	2.2e-19	66.2
WP_164562725.1\|2286285_2289333_+\|tail	phage tail tape measure protein	G8C7Q6	Escherichia_phage	0.0e+00	63.3
WP_164562726.1\|2289435_2289918_+	hypothetical protein	M9NZH8	Enterobacteria_phage	1.7e-40	59.2
WP_175310239.1\|2289925_2290549_+	hypothetical protein	NA	NA	NA	NA
WP_016156674.1\|2291025_2291205_+	hypothetical protein	NA	NA	NA	NA
WP_164562728.1\|2291215_2291713_+	type II toxin-antitoxin system death-on-curing family toxin	NA	NA	NA	NA
WP_164562729.1\|2291791_2292142_+\|tail	phage tail protein	G8C7R0	Escherichia_phage	2.6e-54	91.4
WP_164562730.1\|2292150_2292924_+\|tail	phage minor tail protein L	G8C7R1	Escherichia_phage	5.3e-132	88.6
WP_164562731.1\|2292936_2293668_+	Mov34/MPN/PAD-1 family protein	G8C7R2	Escherichia_phage	4.2e-139	89.7
2300612:2300671	attL	NA	NA	NA	NA
WP_001067855.1\|2300663_2301368_-\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
WP_000174662.1\|2301844_2302609_-\|integrase	tyrosine-type recombinase/integrase	I3WFA4	Macacine_betaherpesvirus	1.9e-25	52.4
WP_000182008.1\|2303073_2303751_+	hypothetical protein	NA	NA	NA	NA
WP_001071437.1\|2303781_2304405_-	RES family NAD+ phosphorylase	NA	NA	NA	NA
WP_000778342.1\|2304935_2305631_+	hypothetical protein	NA	NA	NA	NA
WP_007372356.1\|2305806_2306064_-	hypothetical protein	NA	NA	NA	NA
WP_000981293.1\|2306090_2306918_-	ParA family protein	B0ZSI1	Halomonas_phage	5.1e-08	28.8
WP_000151478.1\|2307096_2308032_+	hypothetical protein	NA	NA	NA	NA
WP_001804960.1\|2308785_2309256_+	hypothetical protein	NA	NA	NA	NA
WP_001804963.1\|2309427_2309571_+	hypothetical protein	NA	NA	NA	NA
WP_001217270.1\|2309777_2311607_+	hypothetical protein	NA	NA	NA	NA
WP_000215804.1\|2311776_2314464_-	hypothetical protein	A0A1B1IUG5	uncultured_Mediterranean_phage	8.2e-07	19.7
WP_001270901.1\|2314615_2315446_-	hypothetical protein	NA	NA	NA	NA
WP_085954987.1\|2315561_2315750_+	AbrB/MazE/SpoVT family DNA-binding domain-containing protein	NA	NA	NA	NA
WP_000139428.1\|2316830_2317544_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_000699996.1\|2317592_2317859_+	flagellar transcriptional regulator FlhD	NA	NA	NA	NA
WP_000103071.1\|2318160_2320137_-	excinuclease ABC subunit UvrB	NA	NA	NA	NA
WP_001120775.1\|2320423_2320699_+	formaldehyde-responsive transcriptional repressor FrmR	NA	NA	NA	NA
WP_000842119.1\|2320757_2321867_+	S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase	E3SJ82	Synechococcus_phage	1.8e-32	30.3
WP_000070400.1\|2321917_2322316_+	VOC family protein	NA	NA	NA	NA
WP_000664785.1\|2322473_2323808_+	DUF3422 family protein	NA	NA	NA	NA
WP_000440264.1\|2323855_2324686_+	S-formylglutathione hydrolase	NA	NA	NA	NA
WP_000233327.1\|2324703_2326014_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA
WP_000038427.1\|2326217_2328869_+	excinuclease ABC subunit UvrA	A0A1B1IVR3	uncultured_Mediterranean_phage	2.1e-156	33.8
WP_000765646.1\|2329060_2329492_+	DUF488 domain-containing protein	NA	NA	NA	NA
WP_001141269.1\|2329856_2330132_+	formaldehyde-responsive transcriptional repressor FrmR	NA	NA	NA	NA
WP_007372360.1\|2330817_2331969_+	iron-containing alcohol dehydrogenase	NA	NA	NA	NA
WP_000859348.1\|2332129_2332276_-	DUF2474 domain-containing protein	NA	NA	NA	NA
WP_007372361.1\|2332301_2333312_-	cytochrome d ubiquinol oxidase subunit II	NA	NA	NA	NA
WP_007372362.1\|2333311_2334721_-	cytochrome ubiquinol oxidase subunit I	NA	NA	NA	NA
WP_164562732.1\|2335700_2336081_+	hypothetical protein	NA	NA	NA	NA
WP_007372364.1\|2336612_2336903_-	hypothetical protein	NA	NA	NA	NA
WP_022646506.1\|2336899_2337937_-	hypothetical protein	NA	NA	NA	NA
WP_022646507.1\|2338212_2338476_+	hypothetical protein	NA	NA	NA	NA
WP_022646508.1\|2338472_2339039_+	hypothetical protein	NA	NA	NA	NA
WP_042863091.1\|2340144_2340627_-	hypothetical protein	NA	NA	NA	NA
WP_052215425.1\|2340637_2341390_-	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_042863090.1\|2341666_2342272_+	hypothetical protein	NA	NA	NA	NA
WP_042863089.1\|2342399_2342729_-	multidrug transporter	NA	NA	NA	NA
WP_171817557.1\|2342863_2343304_-	SgcJ/EcaC family oxidoreductase	NA	NA	NA	NA
WP_022646510.1\|2344333_2344498_-	hypothetical protein	NA	NA	NA	NA
WP_000831397.1\|2344555_2344924_-	hypothetical protein	NA	NA	NA	NA
WP_000896835.1\|2345607_2346975_-	two-component sensor histidine kinase	W8CYF6	Bacillus_phage	3.8e-16	26.1
WP_003026030.1\|2346950_2347619_-	response regulator	NA	NA	NA	NA
WP_001805638.1\|2347704_2348481_-	membrane protein	NA	NA	NA	NA
WP_001067855.1\|2350144_2350849_-\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
WP_001572372.1\|2351014_2351491_-	WbuC family cupin fold metalloprotein	NA	NA	NA	NA
2350093:2350912	attR	NA	NA	NA	NA
WP_164562733.1\|2351567_2352905_-	phosphoethanolamine--lipid A transferase	NA	NA	NA	NA
WP_072196614.1\|2352978_2353947_-\|transposase	IS5 family transposase	A0A1B0VFY5	Salmonella_phage	1.1e-184	98.8
WP_004248839.1\|2353985_2355332_+	copper resistance membrane spanning protein PcoS	W8CYF6	Bacillus_phage	8.8e-18	26.6
WP_000723070.1\|2355549_2355984_+	hypothetical protein	NA	NA	NA	NA
WP_001572377.1\|2356241_2357357_-	nickel/cobalt efflux protein RcnA	NA	NA	NA	NA
WP_000019951.1\|2357479_2357752_+	Ni(II)/Co(II)-binding transcriptional repressor RcnR	NA	NA	NA	NA
WP_003826224.1\|2358362_2358677_+	hypothetical protein	K7PHM8	Enterobacterial_phage	3.3e-24	51.9
WP_164562734.1\|2358676_2359351_+	hypothetical protein	K7PGV3	Enterobacterial_phage	1.8e-48	49.8
WP_164562735.1\|2359459_2359699_+	cor protein	K7PLZ0	Enterobacterial_phage	9.1e-19	57.1
WP_164562736.1\|2359756_2361115_+\|tail	phage tail protein	A0A1V0E5M2	Salmonella_phage	3.6e-112	50.5
WP_008322426.1\|2361249_2361492_-	DinI family protein	Q6UAW0	Klebsiella_phage	4.4e-29	76.6
WP_003841689.1\|2361570_2361903_+	hypothetical protein	K7PGV5	Enterobacterial_phage	2.3e-20	54.2
WP_048217473.1\|2362094_2362505_+	hemerythrin domain-containing protein	NA	NA	NA	NA
WP_126957515.1\|2362590_2362830_-	DinI family protein	K7P797	Enterobacteria_phage	2.6e-34	93.7
WP_008323363.1\|2363150_2363540_+	DNA polymerase V	Q1MVE7	Enterobacteria_phage	2.7e-52	72.9
WP_149335268.1\|2363540_2364209_-	SOS response-associated peptidase family protein	A0A2H4J5W2	uncultured_Caudovirales_phage	1.4e-80	60.4

DBSCAN-SWA_8

2845405 : 2886340

Cronobacter_phage(37.84%)

tRNA,coat,head,tail,terminase,integrase

attL 2858992:2859014|attR 2886521:2886543

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_164562864.1\|2845405_2846185_+	heme ABC transporter ATP-binding protein	A0A2R8FG22	Brazilian_cedratvirus	7.2e-12	28.2
WP_003832593.1\|2846181_2847624_-	YdiU family protein	A0A075BSJ0	Microcystis_phage	1.0e-51	35.3
WP_164562865.1\|2847685_2848399_-	EAL domain-containing protein	NA	NA	NA	NA
WP_164562866.1\|2848717_2849182_-	C40 family peptidase	A0A1V0DZX6	Clostridioides_phage	3.5e-14	38.2
WP_164562867.1\|2849259_2850009_-	vitamin B12 ABC transporter ATP-binding protein BtuD	A0A2R8FG22	Brazilian_cedratvirus	9.3e-09	30.3
WP_003832585.1\|2850008_2850560_-	glutathione peroxidase	NA	NA	NA	NA
WP_003832584.1\|2850620_2851601_-	vitamin B12 ABC transporter permease BtuC	A0A2H4IY97	uncultured_Caudovirales_phage	6.7e-15	24.8
WP_003030571.1\|2851722_2852022_-	integration host factor subunit alpha	A0A0H3UZA0	Geobacillus_virus	7.2e-13	40.0
WP_164562868.1\|2852026_2854414_-\|tRNA	phenylalanine--tRNA ligase subunit beta	NA	NA	NA	NA
WP_003832580.1\|2854429_2855413_-\|tRNA	phenylalanine--tRNA ligase subunit alpha	A0A2K9L3A8	Tupanvirus	1.4e-33	38.5
WP_001386830.1\|2855612_2855657_-	pheST operon leader peptide PheM	NA	NA	NA	NA
WP_003030578.1\|2855782_2856139_-	50S ribosomal protein L20	NA	NA	NA	NA
WP_003030583.1\|2856194_2856392_-	50S ribosomal protein L35	NA	NA	NA	NA
WP_048997935.1\|2856488_2857031_-	translation initiation factor IF-3	A0A2L0UZ54	Agrobacterium_phage	8.2e-15	32.9
WP_164562869.1\|2857034_2858963_-\|tRNA	threonine--tRNA ligase	A0A2K9L297	Tupanvirus	4.4e-127	36.8
2858992:2859014	attL	NA	NA	NA	NA
WP_164562870.1\|2859217_2860462_+	acyltransferase family protein	Q716G0	Shigella_phage	1.6e-18	28.8
WP_175310242.1\|2860560_2861226_-	hypothetical protein	NA	NA	NA	NA
WP_164562872.1\|2861276_2862365_-	hypothetical protein	A0A2H5BPB7	Salmonella_phage	4.7e-62	51.1
WP_126956207.1\|2862422_2864909_-	MoaD/ThiS family protein	F1C5A7	Cronobacter_phage	2.7e-270	56.2
WP_126956205.1\|2864868_2865288_-	C40 family peptidase	F1C5F2	Cronobacter_phage	1.3e-44	61.9
WP_109174257.1\|2865280_2865751_-	hypothetical protein	R9TPR6	Aeromonas_phage	1.3e-45	56.4
WP_164563318.1\|2865750_2866251_-	hypothetical protein	F1C5F0	Cronobacter_phage	1.0e-56	64.9
WP_164562873.1\|2866250_2869190_-\|tail	phage tail length tape measure family protein	F1C5E9	Cronobacter_phage	9.3e-137	42.7
WP_164562874.1\|2869202_2869874_-	hypothetical protein	G0ZNE7	Cronobacter_phage	2.2e-54	48.9
WP_164562875.1\|2869931_2870705_-	hypothetical protein	F1C5E5	Cronobacter_phage	1.3e-74	82.7
WP_164562876.1\|2870765_2871149_-	hypothetical protein	F1C5E4	Cronobacter_phage	6.1e-41	65.4
WP_164562877.1\|2871145_2871610_-	HK97 gp10 family phage protein	A0A2P1MXA4	Escherichia_phage	2.0e-30	44.8
WP_006808949.1\|2871612_2871963_-	hypothetical protein	G0ZNE2	Cronobacter_phage	8.9e-39	67.0
WP_006820518.1\|2871962_2872136_-	hypothetical protein	Q5G8X7	Enterobacteria_phage	7.8e-12	49.1
WP_164562878.1\|2872132_2872411_-	hypothetical protein	NA	NA	NA	NA
WP_164562879.1\|2872410_2872791_-	hypothetical protein	F1C5E2	Cronobacter_phage	1.0e-27	52.8
WP_164562880.1\|2872793_2873195_-	hypothetical protein	NA	NA	NA	NA
WP_164562881.1\|2873204_2874281_-\|coat	phage coat protein	F1C5E1	Cronobacter_phage	2.0e-158	76.5
WP_063159381.1\|2874292_2874733_-	hypothetical protein	F1C5E0	Cronobacter_phage	9.8e-43	63.7
WP_164562882.1\|2874736_2876125_-	DUF2213 domain-containing protein	F1C5D9	Cronobacter_phage	6.5e-149	59.0
WP_164562337.1\|2876186_2877023_-	hypothetical protein	NA	NA	NA	NA
WP_164562883.1\|2876949_2877945_-\|head	phage head morphogenesis protein	F1C5D8	Cronobacter_phage	1.8e-113	68.0
WP_164562884.1\|2877871_2879341_-	DUF1073 domain-containing protein	F1C5D7	Cronobacter_phage	9.6e-151	57.2
WP_164562885.1\|2879353_2880829_-\|terminase	terminase	A0A1W6JNY3	Morganella_phage	7.0e-226	75.6
WP_164562886.1\|2880838_2881288_-	DUF2280 domain-containing protein	I6S1P9	Salmonella_phage	1.4e-55	84.5
WP_164562887.1\|2881320_2881959_-	hypothetical protein	I6S676	Salmonella_phage	5.0e-112	89.6
WP_164562888.1\|2881962_2882169_-	hypothetical protein	NA	NA	NA	NA
WP_059291152.1\|2882284_2882713_+	hypothetical protein	NA	NA	NA	NA
WP_164562889.1\|2883422_2883584_+	TraR/DksA C4-type zinc finger protein	A0A0N7C211	Escherichia_phage	2.6e-09	60.9
WP_164562890.1\|2883583_2883808_+	hypothetical protein	A0A222YYR6	Escherichia_phage	5.7e-31	85.1
WP_164562891.1\|2883804_2884149_+	hypothetical protein	I3PV00	Vibrio_phage	4.4e-22	52.4
WP_164562892.1\|2884187_2884562_+	hypothetical protein	A0A2I6PID6	Escherichia_phage	3.5e-33	57.9
WP_032936075.1\|2884937_2885174_+	hypothetical protein	A0A1P8DTG1	Proteus_phage	3.3e-13	53.7
WP_164562893.1\|2885131_2886340_-\|integrase	tyrosine-type recombinase/integrase	I6R9B6	Salmonella_phage	4.7e-180	76.4
2886521:2886543	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_AP023051

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

99833 : 130115

Salmonella_phage(27.27%)

transposase,integrase

attL 101984:101998|attR 131009:131023

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000608644.1\|99833_101096_-\|transposase	IS1380-like element ISEc9 family transposase	A0A1B0VDR3	Salmonella_phage	1.3e-39	100.0
101984:101998	attL	NA	NA	NA	NA
WP_000050847.1\|102625_102829_+	hypothetical protein	NA	NA	NA	NA
WP_000071870.1\|102900_103506_+	5'-deoxynucleotidase	NA	NA	NA	NA
WP_000184110.1\|103498_103768_+	hypothetical protein	NA	NA	NA	NA
WP_000260293.1\|103781_104000_+	hypothetical protein	NA	NA	NA	NA
WP_000064432.1\|104073_104631_+	hypothetical protein	NA	NA	NA	NA
WP_000595210.1\|104705_105557_+	hypothetical protein	A0A219UQS0	Bacillus_phage	3.6e-09	29.4
WP_001077336.1\|106015_106402_+	hypothetical protein	NA	NA	NA	NA
WP_000122922.1\|106579_108307_+	toprim domain-containing protein	A0A0P0ZFY3	Escherichia_phage	9.9e-14	32.6
WP_000268337.1\|108293_108572_+	hypothetical protein	NA	NA	NA	NA
WP_000714163.1\|108644_108866_+	hypothetical protein	NA	NA	NA	NA
WP_000427620.1\|109047_110052_-\|transposase	IS110-like element IS4321 family transposase	NA	NA	NA	NA
WP_001138073.1\|110130_113103_-\|transposase	Tn3 family transposase	A0A1B0V7H9	Salmonella_phage	0.0e+00	73.1
WP_001162012.1\|113105_113663_-	recombinase family protein	A0A1B0V7I5	Salmonella_phage	5.8e-48	81.3
WP_000845039.1\|113968_114982_-\|integrase	class 1 integron integrase IntI1	A0A1P8DJJ6	Virus_Rctr41k	1.0e-71	45.5
WP_001083725.1\|115126_115624_+	trimethoprim-resistant dihydrofolate reductase DfrA12	A0A0A0PL85	Bacillus_phage	7.5e-23	40.9
WP_001336345.1\|115735_116026_+	DUF1010 domain-containing protein	NA	NA	NA	NA
WP_001206356.1\|116031_116823_+	ANT(3'')-Ia family aminoglycoside nucleotidyltransferase AadA2	NA	NA	NA	NA
WP_110498862.1\|116986_117334_+	QacE family quaternary ammonium compound efflux SMR transporter	NA	NA	NA	NA
WP_000259031.1\|117327_118167_+	sulfonamide-resistant dihydropteroate synthase Sul1	A0A0B5J4J5	Pandoravirus	5.0e-11	27.2
WP_000050481.1\|118571_120113_+\|transposase	IS91 family transposase	NA	NA	NA	NA
WP_004201164.1\|120438_121251_+	subclass B1 metallo-beta-lactamase NDM-1	NA	NA	NA	NA
WP_004201167.1\|121254_121620_+	bleomycin binding protein Ble-MBL	NA	NA	NA	NA
WP_004201168.1\|121624_122263_+	phosphoribosylanthranilate isomerase	NA	NA	NA	NA
WP_004201169.1\|122273_123305_-	protein-disulfide reductase DsbD N-terminal domain-containing protein	NA	NA	NA	NA
WP_004201171.1\|123309_123639_-	divalent-cation tolerance protein CutA	NA	NA	NA	NA
WP_004201172.1\|123832_124123_+	co-chaperone GroES	A0A221S322	uncultured_virus	2.1e-17	47.8
WP_004201176.1\|124178_125819_+	chaperonin GroEL	A0A219YK78	uncultured_virus	8.2e-175	62.1
WP_000259031.1\|127329_128169_+	sulfonamide-resistant dihydropteroate synthase Sul1	A0A0B5J4J5	Pandoravirus	5.0e-11	27.2
WP_000050481.1\|128573_130115_+\|transposase	IS91 family transposase	NA	NA	NA	NA
131009:131023	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_AP022378

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NZ_AP023051

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection