CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP041436	Escherichia coli strain STEC309 plasmid pSTEC309, complete sequence	0 crisprs	NA	0	0	1	0
NZ_CP041435	Escherichia coli strain STEC309 chromosome, complete genome	6 crisprs	csa3,PD-DExK,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,c2c9_V-U4	0	19	12	0

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

50635 : 61881

Cronobacter_phage(22.22%)

integrase

attL 52588:52602|attR 63743:63757

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_032219114.1\|50635_51319_-	DNA methylase	A0A2I7RE86	Vibrio_phage	6.7e-30	36.9
WP_077877494.1\|51703_52675_-	DUF1281 domain-containing protein	NA	NA	NA	NA
52588:52602	attL	NA	NA	NA	NA
WP_019842136.1\|53023_53272_+	DinI-like family protein	Q2A098	Sodalis_phage	5.4e-14	48.0
WP_032219119.1\|53268_53706_+	translesion error-prone DNA polymerase V autoproteolytic subunit	A0A1W6JNS2	Morganella_phage	2.4e-25	46.8
WP_161619133.1\|53705_54698_+	translesion error-prone DNA polymerase V subunit UmuC	F1C5A5	Cronobacter_phage	3.4e-99	58.5
WP_000643588.1\|54727_54976_+	DUF4113 domain-containing protein	F1C5A5	Cronobacter_phage	5.0e-20	60.3
WP_000340833.1\|54980_55373_-	hypothetical protein	NA	NA	NA	NA
WP_001103694.1\|55377_56349_-	hypothetical protein	A0A222YXF2	Escherichia_phage	9.7e-67	42.9
WP_000633911.1\|56577_57222_+	AAA family ATPase	A0A222YXS3	Escherichia_phage	8.8e-40	43.5
WP_000239529.1\|57215_57491_+	hypothetical protein	NA	NA	NA	NA
WP_161619134.1\|57628_58438_-\|integrase	phage integrase family protein	I3WFA4	Macacine_betaherpesvirus	3.0e-53	94.6
WP_001159871.1\|58438_58744_-	type II toxin-antitoxin system toxin CcdB	NA	NA	NA	NA
WP_000813634.1\|58745_58964_-	type II toxin-antitoxin system antitoxin CcdA	NA	NA	NA	NA
WP_096934566.1\|61215_61881_+	PIG-L family deacetylase	A0A1L6BYV0	Mycobacterium_phage	2.4e-08	28.6
63743:63757	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_CP041435

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP041435_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP041435_1

626644-626761

Orphan

Consensus_repeat	Method
TGCCGGATGCGATGCTGGCGCACCTTATCCGGCCTACGGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP041435_1

>merge|NZ_CP041435|1|626644-626761|CRISPRCasFinder
TGCCGGATGCGATGCTGGCGCACCTTATCCGGCCTACGGGGTGCTCAACTTGTTGATGTTGTTGTGTTTTGTACCTGATGCCGGATGCGATGCTGGCGCATCTTATCCGGCCTACGGG

>NZ_CP041435|1|1|626644-626761|CRISPRCasFinder
TGCCGGATGCGATGCTGGCGCACCTTATCCGGCCTACGGG	GTGCTCAACTTGTTGATGTTGTTGTGTTTTGTACCTGA
TGCCGGATGCGATGCTGGCGCATCTTATCCGGCCTACGGG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP041435.1\|WP_000719990.1\|621853_622243_+\|enamine/imine-deaminase	unknown	unknown	gnl\|CDD\|105214
NZ_CP041435.1\|WP_000633577.1\|627021_627723_-\|pirin-family-protein	unknown	unknown	gnl\|CDD\|224655
NZ_CP041435.1\|WP_000104211.1\|614898_615837_+\|transcriptional-regulator-TdcA	unknown	unknown	gnl\|CDD\|182391
NZ_CP041435.1\|WP_000548347.1\|615935_616925_+\|bifunctional-threonine-ammonia-lyase/L-serine-ammonia-lyase-TdcB	unknown	unknown	gnl\|CDD\|236317
NZ_CP041435.1\|WP_000785722.1\|631953_632358_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|227681
NZ_CP041435.1\|WP_001198780.1\|628774_629131_-\|DUF805-domain-containing-protein	unknown	unknown	gnl\|CDD\|225694
NZ_CP041435.1\|WP_001041010.1\|627827_628724_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|176122
NZ_CP041435.1\|WP_001297162.1\|618303_619512_+\|propionate-kinase	unknown	unknown	gnl\|CDD\|183484
NZ_CP041435.1\|WP_000531193.1\|630030_631017_-\|glutathione-S-transferase-family-protein	unknown	unknown	gnl\|CDD\|223512
NZ_CP041435.1\|WP_000096086.1\|631664_631964_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|372871
NZ_CP041435.1\|WP_000861734.1\|619545_621840_+\|2-ketobutyrate-formate-lyase/pyruvate-formate-lyase	unknown	unknown	gnl\|CDD\|153087
NZ_CP041435.1\|WP_000031415.1\|632360_632666_-\|DUF883-domain-containing-protein	unknown	unknown	gnl\|CDD\|226941
NZ_CP041435.1\|WP_000145820.1\|614365_614710_-\|DNA-binding-transcriptional-activator-TdcR	unknown	unknown	gnl\|CDD\|236909
NZ_CP041435.1\|WP_000401598.1\|623953_625285_+\|HAAAP-family-serine/threonine-permease	unknown	unknown	gnl\|CDD\|273283
NZ_CP041435.1\|WP_000460519.1\|625312_626623_+\|serine-dehydratase-subunit-alpha-family-protein	unknown	unknown	gnl\|CDD\|226206
NZ_CP041435.1\|WP_001297155.1\|631086_631569_-\|DoxX-family-protein	unknown	unknown	gnl\|CDD\|225168
NZ_CP041435.1\|WP_000107720.1\|616946_618278_+\|threonine/serine-transporter-TdcC	unknown	unknown	gnl\|CDD\|184191
NZ_CP041435.1\|WP_000384145.1\|629372_629738_-\|DUF805-domain-containing-protein	unknown	unknown	gnl\|CDD\|225694
NZ_CP041435.1\|WP_001295544.1\|626834_626999_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041435.1\|WP_000622115.1\|622314_623679_+\|L-serine-ammonia-lyase	unknown	unknown	gnl\|CDD\|185000

Protein	Function_ID	Function_description	E-value
NZ_CP041435.1\|WP_000719990.1\|621853_622243_+\|enamine/imine-deaminase	gnl\|CDD\|105214	PRK11401, PRK11401, enamine/imine deaminase.	2.43767e-83
NZ_CP041435.1\|WP_000633577.1\|627021_627723_-\|pirin-family-protein	gnl\|CDD\|224655	COG1741, COG1741, Pirin-related protein [General function prediction only].	1.02982e-67
NZ_CP041435.1\|WP_000104211.1\|614898_615837_+\|transcriptional-regulator-TdcA	gnl\|CDD\|182391	PRK10341, PRK10341, transcriptional regulator TdcA.	0
NZ_CP041435.1\|WP_000548347.1\|615935_616925_+\|bifunctional-threonine-ammonia-lyase/L-serine-ammonia-lyase-TdcB	gnl\|CDD\|236317	PRK08638, PRK08638, bifunctional threonine ammonia-lyase/L-serine ammonia-lyase TdcB.	0
NZ_CP041435.1\|WP_000785722.1\|631953_632358_-\|hypothetical-protein	gnl\|CDD\|227681	COG5393, COG5393, Predicted membrane protein [Function unknown].	2.73939e-60
NZ_CP041435.1\|WP_001198780.1\|628774_629131_-\|DUF805-domain-containing-protein	gnl\|CDD\|225694	COG3152, COG3152, Predicted membrane protein [Function unknown].	1.64644e-35
NZ_CP041435.1\|WP_001041010.1\|627827_628724_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|176122	cd08431, PBP2_HupR, The C-terminal substrate binding domain of LysR-type transcriptional regulator, HupR, which regulates expression of the heme uptake receptor HupA; contains the type 2 periplasmic binding fold. HupR, a member of the LysR family, activates hupA transcription under low-iron conditions in the presence of hemin. The expression of many iron-uptake genes, such as hupA, is regulated at the transcriptional level by iron and an iron-binding repressor protein called Fur (ferric uptake regulation). Under iron-abundant conditions with heme, the active Fur repressor protein represses transcription of the iron-uptake gene hupA, and prevents transcriptional activation via HupR. Under low-iron conditions with heme, the Fur repressor is inactive and transcription of the hupA is allowed. This substrate-binding domain shows significant homology to the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	2.2986e-51
NZ_CP041435.1\|WP_001297162.1\|618303_619512_+\|propionate-kinase	gnl\|CDD\|183484	PRK12379, PRK12379, propionate kinase.	0
NZ_CP041435.1\|WP_000531193.1\|630030_631017_-\|glutathione-S-transferase-family-protein	gnl\|CDD\|223512	COG0435, ECM4, Predicted glutathione S-transferase [Posttranslational modification, protein turnover, chaperones].	0
NZ_CP041435.1\|WP_000096086.1\|631664_631964_-\|hypothetical-protein	gnl\|CDD\|372871	pfam13997, YqjK, YqjK-like protein. The YqjK-like protein family includes the E. coli YqjK protein, which is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are approximately 100 amino acids in length. There is a single completely conserved residue R that may be functionally important.	6.11451e-20
NZ_CP041435.1\|WP_000861734.1\|619545_621840_+\|2-ketobutyrate-formate-lyase/pyruvate-formate-lyase	gnl\|CDD\|153087	cd01678, PFL1, Pyruvate formate lyase 1. Pyruvate formate lyase catalyzes a key step in anaerobic glycolysis, the conversion of pyruvate and CoenzymeA to formate and acetylCoA. The PFL mechanism involves an unusual radical cleavage of pyruvate in which two cysteines and one glycine form radicals that are required for catalysis. PFL has a ten-stranded alpha/beta barrel domain that is structurally similar to those of all three ribonucleotide reductase (RNR) classes as well as benzylsuccinate synthase and B12-independent glycerol dehydratase.	0
NZ_CP041435.1\|WP_000031415.1\|632360_632666_-\|DUF883-domain-containing-protein	gnl\|CDD\|226941	COG4575, ElaB, Uncharacterized conserved protein [Function unknown].	1.46625e-41
NZ_CP041435.1\|WP_000145820.1\|614365_614710_-\|DNA-binding-transcriptional-activator-TdcR	gnl\|CDD\|236909	PRK11424, PRK11424, DNA-binding transcriptional activator TdcR; Provisional.	3.36123e-66
NZ_CP041435.1\|WP_000401598.1\|623953_625285_+\|HAAAP-family-serine/threonine-permease	gnl\|CDD\|273283	TIGR00814, membrane_transport_protein_YhjV, serine transporter. The Hydroxy/Aromatic Amino Acid Permease (HAAAP) Family- serine/threonine subfamily (TC 2.A.42.2) The HAAAP family includes well characterized aromatic amino acid:H+ symport permeases and hydroxy amino acid permeases. This subfamily is specific for hydroxy amino acid transporters and includes the serine permease, SdaC, of E. coli, and the threonine permease, TdcC, of E. coli.//added GO terms, none avaialbelf or ser/thr specifically [SS 2/6/05] [Transport and binding proteins, Amino acids, peptides and amines].	2.53913e-167
NZ_CP041435.1\|WP_000460519.1\|625312_626623_+\|serine-dehydratase-subunit-alpha-family-protein	gnl\|CDD\|226206	COG3681, COG3681, L-cysteine desulfidase [Amino acid transport and metabolism].	0
NZ_CP041435.1\|WP_001297155.1\|631086_631569_-\|DoxX-family-protein	gnl\|CDD\|225168	COG2259, COG2259, Predicted membrane protein [Function unknown].	2.8408e-29
NZ_CP041435.1\|WP_000107720.1\|616946_618278_+\|threonine/serine-transporter-TdcC	gnl\|CDD\|184191	PRK13629, PRK13629, threonine/serine transporter TdcC; Provisional.	0
NZ_CP041435.1\|WP_000384145.1\|629372_629738_-\|DUF805-domain-containing-protein	gnl\|CDD\|225694	COG3152, COG3152, Predicted membrane protein [Function unknown].	3.68376e-42
NZ_CP041435.1\|WP_000622115.1\|622314_623679_+\|L-serine-ammonia-lyase	gnl\|CDD\|185000	PRK15040, PRK15040, L-serine ammonia-lyase.	0

>NZ_CP041435.1|WP_000460519.1|625312_626623_+|serine-dehydratase-subunit-alpha-family-protein
MFDSTLNPLWQRYILAVQEEVKPALGCTEPISLALAAAVAAAELEGPVERVEAWVSPNLMKNGLGVTVPGTGMVGLPIAAALGALGGNANAGLEVLKDATAQAIADAKALLAAGKVSVKIQEPCNEILFSRAKVWNGEKWACVTIVGGHTNIVHIETHNGVVFTQQACVAEGEQESPLTVLSRTTLAEILKFVNEVPFAAIRFILDSAKLNCALSQEGLSGKWGLHIGATLEKQCERGLLAKDLSSSIVIRTSAASDARMGGATLPAMSNSGSGNQGITATMPVVVVAEHFGADDERLARALMLSHLSAIYIHNQLPRLSALCAATTAAMGAAAGMAWLVDGRYETISMAISSMIGDVSGMICDGASNSCAMKVSTSASAAWKAVLMALDDTAVTGNEGIVAHDVEQSIANLCALASHSMQQTDRQIIEIMASKAR
>NZ_CP041435.1|WP_000401598.1|623953_625285_+|HAAAP-family-serine/threonine-permease
MEIASNKGVIADASTPAGRAGMSESEWREAIKFDSTDTGWVIMSIGMAIGAGIVFLPVQVGLMGLWVFLLSSVIGYPAMYLFQRLFINTLAESPECKDYPSVISGYLGKNWGILLGALYFVMLVIWMFVYSTAITNDSASYLHTFGVTEGLLSDSPFYGLVLICILVAISSRGEKLLFKISTGMVLTKLLVVAALGVSMVGMWHLYNVGSLPPLGLLVKNAIITLPFTLTSILFIQTLSPMVISYRSREKSIEVARHKALRAMNIAFGILFVTVFFYAVSFTLAMGHDEAVKAYEQNISALAIAAQFISGDGAAWVKVVSVILNIFAVMTAFFGVYLGFREATQGIVMNILRRKMPAEKINENLVQRGIMIFAILLAWSAIVLNAPVLSFTSICSPIFGMVGCLIPAWLVYKVPALHKYKGMSLYLIIVTGLLLCVSPFLAFS
>NZ_CP041435.1|WP_000622115.1|622314_623679_+|L-serine-ammonia-lyase
MISAFDIFKIGIGPSSSHTVGPMNAGKSFIDRLESSGLLTATSHIVVDLYGSLSLTGKGHATDVAIIMGLAGNSPQDVVIDEIPAFIELVTRSGRLPVASGAHIVDFPVAKNIIFHPEMLPRHENGMRITAWKGQEALLSKTYYSVGGGFIVEEEHFGLSHDVETSVPYDFHSAGELLKMCDYNGLSISGLMMHNELALRSKAEIDAGFARIWQVMHDGIERGMNTEGVLPGPLNVPRRAVALRRQLVSSDNISNDPMNVIDWINMYALAVSEENAAGGRVVTAPTNGACGIIPAVLAYYDKFRRPVNERSIARYFLAAGAIGALYKMNASISGAEVGCQGEIGVACSMAAAGLTELLGGSPAQVCNAAEIAMEHNLGLTCDPVAGQVQIPCIERNAINAVKAVNAARMAMRRTSAPRVSLDKVIETMYETGKDMNDKYRETSRGGLAIKVVCG
>NZ_CP041435.1|WP_000719990.1|621853_622243_+|enamine/imine-deaminase
MKKIIETQRAPGAIGPYVQGVDLGSMVFTSGQIPVCPQTGEIPADVQDQARLSLENVKAIVVAAGLSVGDIIKMTVFITDLNDFATINEVYKQFFDEHQATYPTRSCVQVARLPKDVKLEIEAIAVRSA
>NZ_CP041435.1|WP_000861734.1|619545_621840_+|2-ketobutyrate-formate-lyase/pyruvate-formate-lyase
MKVDIDTSDKLYADAWLGFKGTDWKNEINVRDFIQHNYTPYEGDESFLAEATPATTELWEKVMEGIRIENATHAPVDFDTNIATTITAHDAGYINQPLEKIVGLQTDAPLKRALHPFGGINMIKSSFHAYGREMDSEFEYLFTDLRKTHNQGVFDVYSPDMLRCRKSGVLTGLPDGYGRGRIIGDYRRVALYGISYLVRERELQFADLQSRLEKGEDLEATIRLREELAEHRHALLQIQEMAAKYGFDISRPAQNAQEAVQWLYFAYLAAVKSQNGGAMSLGRTASFLDIYIERDFKAGVLNEQQAQELIDHFIMKIRMVRFLRTPEFDSLFSGDPIWATEVIGGMGLDGRTLVTKNSFRYLHTLHTMGPAPEPNLTILWSEELPIAFKKYAAQVSIVTSSLQYENDDLMRTDFNSDDYAIACCVSPMVIGKQMQFFGARANLAKTLLYAINGGVDEKLKIQVGPKTAPLMDDVLDYDKVMDSLDHFMDWLAVQYISALNIIHYMHDKYSYEASLMALHDRDVYRTMACGIAGLSVATDSLSAIKYARVKPIRDENGLAVDFEIDGEYPQYGNNDERVDSIACDLVERFMKKIKALPTYRNAVPTQSILTITSNVVYGQKTGNTPDGRRAGTPFAPGANPMHGRDRKGAVASLTSVAKLPFTYAKDGISYTFSIVPAALGKEDPVRKTNLVGLLDGYFHHEADVEGGQHLNVNVMNREMLLDAIEHPEKYPNLTIRVSGYAVRFNALTREQQQDVISRTFTQAL
>NZ_CP041435.1|WP_001297162.1|618303_619512_+|propionate-kinase
MNEFPVVLVINCGSSSIKFSVLDASDCEVLMSGIADGINSENAFLSVNGGEPAPLAHHSYEGALKAIAFELEKRNLNDSVALIGHRIAHGGSIFTESAIITDEVIDNIRRVSPLAPLHNYANLSGIESAQQLFPGVTQVAVFDTSFHQTMAPEAYLYGLPWKYYEELGVRRYGFHGTSHRYVSQRAHSLLNLAEDDSGLVVAHLGNGASICAVRNGQSVDTSMGMTPLEGLMMGTRSGDVDFGAMSWVASQTNQSLGDLERVVNKESGLLGISGLSSDLRVLEKAWHEGHERAQLAIKTFVHRIARHIAGHAASLRRLDGIIFTGGIGENSSLIRRLVMEHLAVLGVEIDTEMNNRSNSCGERIVSSENARVICAVIPTNEEKMIALDAIHLGKVNAPAEFA
>NZ_CP041435.1|WP_000107720.1|616946_618278_+|threonine/serine-transporter-TdcC
MSTSDSIVSSQTKQSSWRKSDTTWTLGLFGTAIGAGVLFFPIRAGFGGLIPILLMLVLAYPIAFYCHRALARLCLSGSNPSGNITETVEEHFGKTGGVVITFLYFFAICPLLWIYGVTITNTFMTFWENQLGFAPLNRGFVALFLLLLMAFVIWFGKDLMVKVMSYLVWPFIASLVLISLSLIPYWNSAVIDQVDLGSLSLTGHDGILITVWLGISIMVFSFNFSPIVSSFVVSKREEYEKDFGRDFTERKCSQIISRASMLMVAVVMFFAFSCLFTLSPANMAEAKAQNIPVLSYLANHFASMTGTKTTFAITLEYAASIIALVAIFKSFFGHYLGTLEGLNGLILKFGYKGDKTKVSLGKLNTISMIFIMGSTWVVAYANPNILDLIEAMGAPIIASLLCLLPMYAIRKAPSLAKYRGRLDNVFVTVIGLLTILNIVYKLF
>NZ_CP041435.1|WP_000548347.1|615935_616925_+|bifunctional-threonine-ammonia-lyase/L-serine-ammonia-lyase-TdcB
MHITYDLPVAIDDIIEAKQRLAGRIYKTGMPRSNYFSERCKGEIFLKFENMQRTGSFKIRGAFNKLSSLTDAEKRKGVVACSAGNHAQGVSLSCAMLGIDGKVVMPKGAPKSKVAATCDYSAEVVLHGDNFNDTIAKVSEIVEMEGRIFIPPYDDPKVIAGQGTIGLEIMEDLYDVDNVIVPIGGGGLIAGIAVAIKSINPTIRVIGVQSENVHGMAASFHSGEITTHRTTGTLADGCDVSRPGNLTYEIVRELVDDIVLVSEDEIRNSMIALIQRNKVVTEGAGALACAALLSGKLDQYIQNRKTVSIISGGNIDLSRVSQITGFVDA
>NZ_CP041435.1|WP_000104211.1|614898_615837_+|transcriptional-regulator-TdcA
MSTILLPKTQHLVVFQEVIRSGSIGSAAKELGLTQPAVSKIINDIEDYFGVELVVRKNTGVTLTPAGQLLLSRSESITREMKNMVNEISGMSSEAVVEVSFGFPSLIGFTFMSGMINKFKEVFPKAQVSMYEAQLSSFLPAIRDGRLDFAIGTLSAEMKLQDLHVEPLFESEFVLVASKSRTCTGTTTLESLKNEQWVLPQTNMGYYSELLTTLQRNGISIENIVKTDSVVTIYNLVLNADFLTVIPCDMTSPFGSNQFITIPVEETLPVAQYAAVWSKNYRIKKAASVLVELAKEYSSYNGCRRRQLIEVG
>NZ_CP041435.1|WP_000145820.1|614365_614710_-|DNA-binding-transcriptional-activator-TdcR
MTGITIFYGDNIIRYVVNIKKGLRPYFKQLPDNYQAKFELNLMSKFSNFIINKPFSAINTAARHIFSRYLLENKHLFYQYFKISNTGIDHLEQLINVNFFSSDRTSFCECNRFP
>NZ_CP041435.1|WP_001295544.1|626834_626999_-|hypothetical-protein
MSKKSAKKRQPVKPVVAKEPARTAKNFGYEEMLSELEAIVADAETRLAEDEATA
>NZ_CP041435.1|WP_000633577.1|627021_627723_-|pirin-family-protein
MITTRTARQCGQADYGWLQARYTFSFGHYFDPKLLGYASLRVLNQEVLAPGAAFQPRTYPKVDILNVILDGEAEYRDSEGNHVQASAGEALLLSTQPGVSYSEHNLSKDKPLTRMQLWLDACPQRENPLIQKLALNMGKQQLIASPEGTMGSLQLRQQVWLHHIVLDKGESANFQLHGPRAYLQSIHGKFHALTHHEEKAALTCGDGAFIRDEANITLVADSPLRALLIDLPV
>NZ_CP041435.1|WP_001041010.1|627827_628724_+|LysR-family-transcriptional-regulator
MAKERALTLEALRVMDAIDRRGSFAAAADELGRVPSALSYTMQKLEEELDVVLFDRSGHRTKFTNVGRMLLERGRVLLEAADKLTTDAEALARGWETHLTIVTEALVPTPAFFPLIDKLAAKANTQLAIITEVLAGAWERLEQGRADIVIAPDMHFRSSSEINSRKLYTLMNVYVAAPDHPIHQEPEPLSEVTRVKYRGIAVADTARERPVLTVQLLDKQPRLTVSTIEDKRQALLAGLGVATMPYPMVEKDIAEGRLRVVSPESTSEIDIIMAWRRDSMGEAKSWCLREIPKLFSGK
>NZ_CP041435.1|WP_001198780.1|628774_629131_-|DUF805-domain-containing-protein
MQWYLAVLKNYVGFSGRARRKEYWMFTLINAIVGAIINVIQLILGLEFPFLSLIYLAATIIPVIALCVRRLHDTDRSGAWALLYLVPIIGWLVLFVFACLEGNSGSNRYGNDPKFGSN
>NZ_CP041435.1|WP_000384145.1|629372_629738_-|DUF805-domain-containing-protein
MDWYLKVLKNYVGFRGRARRKEYWMFILVNIIFTFVLGLLDKMLGWQRAGGEGILTTIYGILVFLPWWAVQFRRLHDTDRSAWWALLFLIPFIGWLIIIVFNCQAGTPGENRFGPDPKLEP
>NZ_CP041435.1|WP_000531193.1|630030_631017_-|glutathione-S-transferase-family-protein
MGQLIDGVWHDTWYDTKSTGGKFQRSASAFRNWLTADGAPGPTGTGGFIAEKDRYHLYISLACPWAHRTLIMRKLKGLEPFISVSVVNPLMLENGWTFDDSFPGATGDTLYQHEFLYQLYLHADPHYSGRVTVPVLWDKKNHTIVSNESAEIIRMFNTAFDALGAKAGDYYPPALQTKIDELNGWIYDTVNNGVYKAGFATSQQAYDEAVAKVFESLARLEQILGQHRYLTGNQLTEADIRLWTTLVRFDPVYVTHFKCDKHRISDYLNLYGFLRDIYQMPGIAETVNFDHIRNHYFRSHKTINPTGIISIGPWQDLDEPHGRDVRFG
>NZ_CP041435.1|WP_001297155.1|631086_631569_-|DoxX-family-protein
MILSIDSNDANTAPLHKKTISSLSGAVESMMKKLEDVGVLVARILMPILFITAGWGKITAYSGTQQYMEAMGVPGFMLPLVILLEFGGGLAILFGFLTRTTALFTAGFTLLTAFLFHSNFAEGVNSLMFMKNLTISGGFLLLAITGPGAYSIDRLLNKKW
>NZ_CP041435.1|WP_000096086.1|631664_631964_-|hypothetical-protein
MSSKVERERRKAQLLSQIQQQRLDLSASRREWLEATGAYDRRWNMLLSLRSWALVGSSVMAIWTIRHPNMLVRWARRGFGVWSAWRLVKTTLKQQQLRG
>NZ_CP041435.1|WP_000785722.1|631953_632358_-|hypothetical-protein
MADTHHAQGPGKSVLGIGQRIVSIMVEMVETRLRLAVVELEEEKANLFQLLLMLGLTMLFAAFGLMSLMVLIIWAVDPQYRLNAMIATTVVLLLLALIGGIWTLRKSRKSTLLRHTRHELANDRQLLEEESREQ
>NZ_CP041435.1|WP_000031415.1|632360_632666_-|DUF883-domain-containing-protein
MSKEHTTEHLRAELKSLSDTLEEVLSSSGEKSKEELSKIRSKAEQALKQSRYRLGETGDAIAKQTRVAAARADEYVRENPWTGVGIGAAIGVVLGVLLSRR

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Crispr_ID: NZ_CP041435_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP041435_2

1082142-1083207

TypeI-E

I-E

Consensus_repeat	Method
GTGTTCCCCGCGCCAGCGGGGATAAACC	PILER-CR
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CRISPRCasFinder
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CRT

17 spacers

cas3,cas8e,cse2gr11,cas7,cas5

The CRISPR arrays of NZ_CP041435_2

>merge|NZ_CP041435|2|1082142-1083207|PILER-CR,CRISPRCasFinder,CRT
GTGTTCCCCGCGCCAGCGGGGATAAACCGAAAACAGCCTTTAGATTAGTACCTGACGACCGGTGTTCCCCGCGCCAGCGGGGATAAACCGTAAACGCACCTGGCGCGCCACTTTATCAACAAGTGTTCCCCGCGCCAGCGGGGATAAACCGCGGCTTGTTTAATTGCGTGGAACGTCTCAATTGTGTTCCCCGCGCCAGCGGGGATAAACCGACGGCGTGGATTGAGGGACGGGTATTTGGTCCGTGTTCCCCGCGCCAGCGGGGATAAACCTAGATCGCGCCACGAGGAAACGAATATGAACGGGTGTTCCCCGCGCCAGCGGGGATAAACCGTGCCGCCAGGCCAGCGACACATCAGACAACTGGTGTTCCCCGCGCCAGCGGGGATAAACCGGTCTGTGATGGCCTGCTCGTGAGTCCGCGGCGGTGTTCCCCGCGCCAGCGGGGATAAACCGTTTTGATTTCATTAACGGCGCTCCCCATATTTGTGTTCCCCGCGCCAGCGGGGATAAACCGCGTTCTGAATCCGATATTCTTCAGCACCTTCAGTGTTCCCCGCGCCAGCGGGGATAAACCGAGCGTCAATCAGCGCGTCTATCGCGTCACTTTGTGTTCCCCGCGCCAGCGGGGATAAACCGATTTGGGGGTATGAGAGCGCCGAGCCGTTCGGGTGTTCCCCGCGCCAGCGGGGATAAACCGGCTCCCTGTCAGTTGTAATCGATAACGTTGATGTGTTCCCCGCGCCAGCGGGGATAAACCGATGTAGGGGCAATCGAACGATTCTCTGCCGACGTGTTCCCCGCGCCAGCGGGGATAAACCGCCTAGCCCGATTATCGGCATGAGCGATGCGGAGTGTTCCCCGCGCCAGCGGGGATAAACCGTCGAAGAAGAAAGGGAAATAATGCGAGGAACGGTGTTCCCCGCGCCAGCGGGGATAAACCGTATTACGCGCCAGCAATGCTGACAGCGGCAAAGTGTTCCCCGCGCCAGCGGGGATAAACCGCGCGAGAGCCAGCAAAACGCCAGGGCACAAAAGAGTTCCCCGCGCCAGCGGGGATAAACCA

>NZ_CP041435|2|1|1082142-1083206|PILER-CR
GTGTTCCCCGCGCCAGCGGGGATAAACC	GAAAACAGCCTTTAGATTAGTACCTGACGACCG
GTGTTCCCCGCGCCAGCGGGGATAAACC	GTAAACGCACCTGGCGCGCCACTTTATCAACAA
GTGTTCCCCGCGCCAGCGGGGATAAACC	GCGGCTTGTTTAATTGCGTGGAACGTCTCAATT
GTGTTCCCCGCGCCAGCGGGGATAAACC	GACGGCGTGGATTGAGGGACGGGTATTTGGTCC
GTGTTCCCCGCGCCAGCGGGGATAAACC	TAGATCGCGCCACGAGGAAACGAATATGAACGG
GTGTTCCCCGCGCCAGCGGGGATAAACC	GTGCCGCCAGGCCAGCGACACATCAGACAACTG
GTGTTCCCCGCGCCAGCGGGGATAAACC	GGTCTGTGATGGCCTGCTCGTGAGTCCGCGGCG
GTGTTCCCCGCGCCAGCGGGGATAAACC	GTTTTGATTTCATTAACGGCGCTCCCCATATTT
GTGTTCCCCGCGCCAGCGGGGATAAACC	GCGTTCTGAATCCGATATTCTTCAGCACCTTCA
GTGTTCCCCGCGCCAGCGGGGATAAACC	GAGCGTCAATCAGCGCGTCTATCGCGTCACTTT
GTGTTCCCCGCGCCAGCGGGGATAAACC	GATTTGGGGGTATGAGAGCGCCGAGCCGTTCGG
GTGTTCCCCGCGCCAGCGGGGATAAACC	GGCTCCCTGTCAGTTGTAATCGATAACGTTGAT
GTGTTCCCCGCGCCAGCGGGGATAAACC	GATGTAGGGGCAATCGAACGATTCTCTGCCGAC
GTGTTCCCCGCGCCAGCGGGGATAAACC	GCCTAGCCCGATTATCGGCATGAGCGATGCGGA
GTGTTCCCCGCGCCAGCGGGGATAAACC	GTCGAAGAAGAAAGGGAAATAATGCGAGGAACG
GTGTTCCCCGCGCCAGCGGGGATAAACC	GTATTACGCGCCAGCAATGCTGACAGCGGCAAA
GTGTTCCCCGCGCCAGCGGGGATAAACC	GCGCGAGAGCCAGCAAAACGCCAGGGCACAAAA
GAGTTCCCCGCGCCAGCGGGGATAAACC

>NZ_CP041435|2|2|1082142-1083207|CRISPRCasFinder
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AAAACAGCCTTTAGATTAGTACCTGACGACCG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TAAACGCACCTGGCGCGCCACTTTATCAACAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGGCTTGTTTAATTGCGTGGAACGTCTCAATT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ACGGCGTGGATTGAGGGACGGGTATTTGGTCC
GTGTTCCCCGCGCCAGCGGGGATAAACCT	AGATCGCGCCACGAGGAAACGAATATGAACGG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TGCCGCCAGGCCAGCGACACATCAGACAACTG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GTCTGTGATGGCCTGCTCGTGAGTCCGCGGCG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TTTTGATTTCATTAACGGCGCTCCCCATATTT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGTTCTGAATCCGATATTCTTCAGCACCTTCA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AGCGTCAATCAGCGCGTCTATCGCGTCACTTT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ATTTGGGGGTATGAGAGCGCCGAGCCGTTCGG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCTCCCTGTCAGTTGTAATCGATAACGTTGAT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ATGTAGGGGCAATCGAACGATTCTCTGCCGAC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CCTAGCCCGATTATCGGCATGAGCGATGCGGA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TCGAAGAAGAAAGGGAAATAATGCGAGGAACG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TATTACGCGCCAGCAATGCTGACAGCGGCAAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGCGAGAGCCAGCAAAACGCCAGGGCACAAAA
GAGTTCCCCGCGCCAGCGGGGATAAACCA

>NZ_CP041435|2|1|1082142-1083207|CRT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AAAACAGCCTTTAGATTAGTACCTGACGACCG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TAAACGCACCTGGCGCGCCACTTTATCAACAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGGCTTGTTTAATTGCGTGGAACGTCTCAATT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ACGGCGTGGATTGAGGGACGGGTATTTGGTCC
GTGTTCCCCGCGCCAGCGGGGATAAACCT	AGATCGCGCCACGAGGAAACGAATATGAACGG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TGCCGCCAGGCCAGCGACACATCAGACAACTG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GTCTGTGATGGCCTGCTCGTGAGTCCGCGGCG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TTTTGATTTCATTAACGGCGCTCCCCATATTT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGTTCTGAATCCGATATTCTTCAGCACCTTCA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AGCGTCAATCAGCGCGTCTATCGCGTCACTTT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ATTTGGGGGTATGAGAGCGCCGAGCCGTTCGG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCTCCCTGTCAGTTGTAATCGATAACGTTGAT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ATGTAGGGGCAATCGAACGATTCTCTGCCGAC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CCTAGCCCGATTATCGGCATGAGCGATGCGGA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TCGAAGAAGAAAGGGAAATAATGCGAGGAACG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TATTACGCGCCAGCAATGCTGACAGCGGCAAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGCGAGAGCCAGCAAAACGCCAGGGCACAAAA
GAGTTCCCCGCGCCAGCGGGGATAAACCA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP041435.1\|WP_000039856.1\|1088705_1089440_+\|phosphoadenosine-phosphosulfate-reductase	unknown	unknown	gnl\|CDD\|234997
NZ_CP041435.1\|WP_000085053.1\|1096038_1096785_+\|type-I-E-CRISPR-associated-protein-Cas5/CasD	cas5	cd09645_cas5_CAS-I-E	gnl\|CDD\|187776
NZ_CP041435.1\|WP_001233935.1\|1090050_1092750_+\|CRISPR-associated-helicase/endonuclease-Cas3	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|224124
NZ_CP041435.1\|WP_000956458.1\|1089704_1089857_+\|type-I-toxin-antitoxin-system-Hok-family-toxin	unknown	unknown	gnl\|CDD\|366840
NZ_CP041435.1\|WP_000029345.1\|1094406_1094940_+\|type-I-E-CRISPR-associated-protein-Cse2/CasB	cse2gr11	cd09670_cse2gr11_CAS-I-E	gnl\|CDD\|274193
NZ_CP041435.1\|WP_001290706.1\|1086919_1088632_+\|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit	unknown	unknown	gnl\|CDD\|237402
NZ_CP041435.1\|WP_000254745.1\|1074534_1074870_+\|endoribonuclease-MazF	unknown	unknown	gnl\|CDD\|182138
NZ_CP041435.1\|WP_000226815.1\|1071974_1074209_+\|GTP-pyrophosphokinase	unknown	unknown	gnl\|CDD\|182797
NZ_CP041435.1\|WP_000034929.1\|1079038_1079401_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041435.1\|WP_001379137.1\|1080355_1080958_-\|LemA-family-protein	unknown	unknown	gnl\|CDD\|224618
NZ_CP041435.1\|WP_001406967.1\|1092847_1094410_+\|type-I-E-CRISPR-associated-protein-Cse1/CasA	cas8e	cd09669_cas8e_CAS-I-E	gnl\|CDD\|274192
NZ_CP041435.1\|WP_000987944.1\|1084439_1084805_-\|6-carboxytetrahydropterin-synthase-QueD	unknown	unknown	gnl\|CDD\|238264
NZ_CP041435.1\|WP_000211933.1\|1085120_1086920_+\|NADPH-dependent-assimilatory-sulfite-reductase-flavoprotein-subunit	unknown	unknown	gnl\|CDD\|182862
NZ_CP041435.1\|WP_001071648.1\|1074940_1075732_+\|nucleoside-triphosphate-pyrophosphohydrolase	unknown	unknown	gnl\|CDD\|236569
NZ_CP041435.1\|WP_000036723.1\|1077684_1078983_+\|phosphopyruvate-hydratase	unknown	unknown	gnl\|CDD\|234617
NZ_CP041435.1\|WP_001406966.1\|1094954_1096028_+\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	cas7	cd09646_cas7_CAS-I-E	gnl\|CDD\|273843
NZ_CP041435.1\|WP_000793004.1\|1079436_1080342_-\|YgcG-family-protein	unknown	unknown	gnl\|CDD\|224429
NZ_CP041435.1\|WP_000581937.1\|1074286_1074535_+\|type-II-toxin-antitoxin-system-antitoxin-MazE	unknown	unknown	gnl\|CDD\|182082
NZ_CP041435.1\|WP_001199982.1\|1081130_1081802_+\|7-carboxy-7-deazaguanine-synthase-QueE	unknown	unknown	gnl\|CDD\|275126
NZ_CP041435.1\|WP_000210878.1\|1075959_1077597_+\|CTP-synthase-(glutamine-hydrolyzing)	unknown	unknown	gnl\|CDD\|235437

Protein	Function_ID	Function_description	E-value
NZ_CP041435.1\|WP_000039856.1\|1088705_1089440_+\|phosphoadenosine-phosphosulfate-reductase	gnl\|CDD\|234997	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase.	1.3479e-137
NZ_CP041435.1\|WP_000085053.1\|1096038_1096785_+\|type-I-E-CRISPR-associated-protein-Cas5/CasD	gnl\|CDD\|187776	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas5 is a RAMP superfamily protein; Subunit of the Cascade complex.	1.27305e-47
NZ_CP041435.1\|WP_001233935.1\|1090050_1092750_+\|CRISPR-associated-helicase/endonuclease-Cas3	gnl\|CDD\|224124	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms].	1.37827e-176
NZ_CP041435.1\|WP_000956458.1\|1089704_1089857_+\|type-I-toxin-antitoxin-system-Hok-family-toxin	gnl\|CDD\|366840	pfam01848, HOK_GEF, Hok/gef family.	8.32243e-12
NZ_CP041435.1\|WP_000029345.1\|1094406_1094940_+\|type-I-E-CRISPR-associated-protein-Cse2/CasB	gnl\|CDD\|274193	TIGR02548, CRISPR_system_Cascade_subunit_CasB, CRISPR type I-E/ECOLI-associated protein CasB/Cse2. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model family is found in Ecoli subtype CRISPR/Cas regions of many bacteria, most of which are mesophiles, and not in Archaea. It was designated Cse2 originally, and renamed CasB based on its characterization in the CASCADE complex.	6.64549e-30
NZ_CP041435.1\|WP_001290706.1\|1086919_1088632_+\|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit	gnl\|CDD\|237402	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit.	0
NZ_CP041435.1\|WP_000254745.1\|1074534_1074870_+\|endoribonuclease-MazF	gnl\|CDD\|182138	PRK09907, PRK09907, endoribonuclease MazF.	2.42227e-74
NZ_CP041435.1\|WP_000036723.1\|1077684_1078983_+\|phosphopyruvate-hydratase	gnl\|CDD\|234617	PRK00077, eno, enolase; Provisional.	0
NZ_CP041435.1\|WP_001071648.1\|1074940_1075732_+\|nucleoside-triphosphate-pyrophosphohydrolase	gnl\|CDD\|236569	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed.	8.97718e-160
NZ_CP041435.1\|WP_000793004.1\|1079436_1080342_-\|YgcG-family-protein	gnl\|CDD\|224429	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only].	1.06471e-80
NZ_CP041435.1\|WP_001406967.1\|1092847_1094410_+\|type-I-E-CRISPR-associated-protein-Cse1/CasA	gnl\|CDD\|274192	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model family, represented by CT1972 from Chlorobium tepidum, is found in Ecoli subtype CRISPR/Cas regions of many bacteria, most of which are mesophiles, and not in Archaea. It is designated Cse1.	1.92483e-165
NZ_CP041435.1\|WP_000987944.1\|1084439_1084805_-\|6-carboxytetrahydropterin-synthase-QueD	gnl\|CDD\|238264	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS). Folate derivatives are essential cofactors in the biosynthesis of purines, pyrimidines, and amino acids, as well as formyl-tRNA. Mammalian cells are able to utilize pre-formed folates after uptake by a carrier-mediated active transport system. Most microbes and plants lack this system and must synthesize folates de novo from guanosine triphosphate. One enzyme from this pathway is PTPS which catalyzes the conversion of dihydroneopterin triphosphate to 6-pyruvoyl tetrahydropterin. The functional enzyme is a hexamer of identical subunits.	9.8593e-60
NZ_CP041435.1\|WP_000211933.1\|1085120_1086920_+\|NADPH-dependent-assimilatory-sulfite-reductase-flavoprotein-subunit	gnl\|CDD\|182862	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit.	0
NZ_CP041435.1\|WP_001379137.1\|1080355_1080958_-\|LemA-family-protein	gnl\|CDD\|224618	COG1704, LemA, Uncharacterized conserved protein [Function unknown].	1.00218e-77
NZ_CP041435.1\|WP_000226815.1\|1071974_1074209_+\|GTP-pyrophosphokinase	gnl\|CDD\|182797	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional.	0
NZ_CP041435.1\|WP_001406966.1\|1094954_1096028_+\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	gnl\|CDD\|273843	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family is represented by CT1975 of Chlorobium tepidum and is part of the Ecoli subtype of CRISPR/Cas locis. It is designated Cse4, for CRISPR/Cas Subtype Ecoli protein 4.	1.27421e-145
NZ_CP041435.1\|WP_000581937.1\|1074286_1074535_+\|type-II-toxin-antitoxin-system-antitoxin-MazE	gnl\|CDD\|182082	PRK09798, PRK09798, MazF-MazE toxin-antitoxin system antitoxin MazE.	6.19513e-48
NZ_CP041435.1\|WP_001199982.1\|1081130_1081802_+\|7-carboxy-7-deazaguanine-synthase-QueE	gnl\|CDD\|275126	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE. Members of this radical SAM domain protein family appear to be the E. coli form of the queuosine biosynthesis protein QueE. QueE is involved in making preQ0 (7-cyano-7-deazaquanine), a precursor of both the bacterial/eukaryotic modified tRNA base queuosine and the archaeal modified base archaeosine. Members occur in species that lack known forms of QueE but usually are not found in queuosine biosynthesis operons. Members of this family tend to form bi-directional best hit matches to members of known (TIGR03365) and putative (TIGR03963) QueE families from other lineages.	9.11521e-156
NZ_CP041435.1\|WP_000210878.1\|1075959_1077597_+\|CTP-synthase-(glutamine-hydrolyzing)	gnl\|CDD\|235437	PRK05380, pyrG, CTP synthetase; Validated.	0

>NZ_CP041435.1|WP_001199982.1|1081130_1081802_+|7-carboxy-7-deazaguanine-synthase-QueE
MQYPINEMFQTLQGEGYFTGVPAIFIRLQGCPVGCAWCDTKHTWEKLEDREVSLFSILAKTKESDKWGSASSEDLLAVIGRQGYTARHVVITGGEPCIHDLLPLTDLLEKNGFSCQIETSGTHEVRCTPNTWVTVSPKLNMRGGYDVLSQALERANEIKHPVGRVRDIEALDELLATLTDDKPRVIALQPISQKDDATRLCIETCIARNWRLSMQTHKYLNIA
>NZ_CP041435.1|WP_001379137.1|1080355_1080958_-|LemA-family-protein
MLRTFIVIIFIFNLSGCGYNDIQTYDEQVNASWSEVLNQYQRRADLIPNLVASIKGYSNHEKDVLEAVTLARSQANRASSDLQQTPGNEQKLQAWQQAQAQVTRTLGQLTIISERYPELKAQELYQNLMVQLEGSENRIAVARGRYIKAIEQYNVTIRKFPAVLTAKVMDYTPKKNYLPDDVAAVSKAPTIDFSQNASAH
>NZ_CP041435.1|WP_000793004.1|1079436_1080342_-|YgcG-family-protein
MKNLILLLVLICSSAFAVQVPVPEFAKYINDLTGTLTREEVSTLTSQIKTLTQKSHAQLIVLVVETTGDETIEQYATRVFERWQPGHKNLDDGILLVVAWQDHTVHIEIGYGLEGILTDAQSGQIIRNSIIPAFKKGDLAVGLQQGIGDIETRLSENDLVNNTSPDHPLPFSGWWALLVWAIVLTFISARGYVKTLGVICFAAIILAFVLPIAGYSGSWGVLATLLCFATPFLVVAIAFTPFGRKVRDSMRSANRPSRYERSNSASRHSSSSSSSSSSSFNNDNFSGGGGSSGGGGASGRW
>NZ_CP041435.1|WP_000034929.1|1079038_1079401_-|hypothetical-protein
MSKILANHPRLSKFVFGLFGAAGMIWLNKAFQGDELFQLITSLLALDTFVYFCIYSLINPIPEANDFLWDYKVHQRKYSSNISHNDFVSNVRNSRKIVRILILVGITFINVIALLTKLKM
>NZ_CP041435.1|WP_000036723.1|1077684_1078983_+|phosphopyruvate-hydratase
MSKIVKIIGREIIDSRGNPTVEAEVHLEGGFVGMAAAPSGASTGSREALELRDGDKSRFLGKGVTKAVAAVNGPIAQALIGKDAKDQAGIDKIMIDLDGTENKSKFGANAILAVSLANAKAAAAAKGMPLYEHIAELNGTPGKYSMPVPMMNIINGGEHADNNVDIQEFMIQPVGAKTVKEAIRMGSEVFHHLAKVLKAKGMNTAVGDEGGYAPNLGSNAEALAVIAEAVKAAGYELGKDITLAMDCAASEFYKDGKYVLAGEGNKAFTSEEFTHFLEELTKQYPIVSIEDGLDESDWDGFAYQTKVLGDKIQLVGDDLFVTNTKILKEGIEKGIANSILIKFNQIGSLTETLAAIKMAKDAGYTAVISHRSGETEDATIADLAVGTAAGQIKTGSMSRSDRVAKYNQLIRIEEALGEKAPYNGRKEIKGQA
>NZ_CP041435.1|WP_000210878.1|1075959_1077597_+|CTP-synthase-(glutamine-hydrolyzing)
MTTNYIFVTGGVVSSLGKGIAAASLAAILEARGLNVTIMKLDPYINVDPGTMSPIQHGEVFVTEDGAETDLDLGHYERFIRTKMSRRNNFTTGRIYSDVLRKERRGDYLGATVQVIPHITNAIKERVLEGGEGHDVVLVEIGGTVGDIESLPFLEAIRQMAVEIGREHTLFMHLTLVPYMAASGEVKTKPTQHSVKELLSIGIQPDILICRSDRAVPANERAKIALFCNVPEKAVISLKDVDSIYKIPGLLKSQGLDDYICKRFSLNCPEANLSEWEQVIFEEANPVSEVTIGMVGKYIELPDAYKSVIEALKHGGLKNRVSVNIKLIDSQDVETRGVEILKGLDAILVPGGFGYRGVEGMITTARFARENNIPYLGICLGMQVALIDYARHVANMENANSTEFVPDCKYPVVALITEWRDENGNVEVRSEKSDLGGTMRLGAQQCQLVDDSLVRQLYNAPTIVERHRHRYEVNNMLLKQIEDAGLRVAGRSGDDQLVEIIEVPNHPWFVACQFHPEFTSTPRDGHPLFAGFVKAASEFQKRQAK
>NZ_CP041435.1|WP_001071648.1|1074940_1075732_+|nucleoside-triphosphate-pyrophosphohydrolase
MNQIDRLLTIMQRLRDPENGCPWDKEQTFATIAPYTLEETYEVLDAIAREDFDDLRGELGDLLFQVVFYAQMAQEEGRFDFNDICAAISDKLERRHPHVFADSSAENSSEVLARWEQIKTEERAQKAQHSALDDIPRSLPALMRAQKIQKRCANVGFDWTTLGPVVDKVYEEIDEVMYEARQAVVDQAKLEEEMGDLLFATVNLARHLGTKAEIALQKANEKFERRFREVERIVAARGLEMTGVDLETMEEVWQQVKRQEIDL
>NZ_CP041435.1|WP_000254745.1|1074534_1074870_+|endoribonuclease-MazF
MVSRYVPDMGDLIWVDFDPTKGSEQAGHRPAVVLSPFMYNNKTGMCLCVPYTTQSKGYPFEVVLSGQERDGVALADQVKSIAWRARGATKKGTVAPEELQLIKAKINVLIG
>NZ_CP041435.1|WP_000581937.1|1074286_1074535_+|type-II-toxin-antitoxin-system-antitoxin-MazE
MIHSSVKRWGNSPAVRIPATLMQALNLNIDDEVKIDLVDGKLIIEPVRKEPVFTLAELVNDITPENLHENIDWGEPKDKEVW
>NZ_CP041435.1|WP_000226815.1|1071974_1074209_+|GTP-pyrophosphokinase
MVAVRSAHINKAGEFDPEKWIASLGITSQKSCECLAETWAYCLQQTQGHPDASLLLWRGVEMVEILSTLSMDIDTLRAALLFPLADANVVSEDVLRESVGKSVVNLIHGVRDMAAIRQLKATHTDSVSSEQVDNVRRMLLAMVDDFRCVVIKLAERIAHLREVKDAPEDERVLAAKECTNIYAPLANRLGIGQLKWELEDYCFRYLHPTEYKRIAKLLHERRLDREHYIEEFVGHLRAEMKAEGVKAEVYGRPKHIYSIWRKMQKKNLAFDELFDVRAVRIVAERLQDCYAALGIVHTHYRHLPDEFDDYVANPKPNGYQSIHTVVLGPGGKTVEIQIRTKQMHEDAELGVAAHWKYKEGAAAGGARSGHEDRIAWLRKLIAWQEEMADSGEMLDEVRSQVFDDRVYVFTPKGDVVDLPAGSTPLDFAYHIHSDVGHRCIGAKIGGRIVPFTYQLQMGDQIEIITQKQPNPSRDWLNPNLGYVTTSRGRSKIHAWFRKQDRDKNILAGRQILDDELEHLGISLKEAEKHLLPRYNFNDVDELLAAIGGGDIRLNQMVNFLQSQFNKPSAEEQDAAALKQLQQKSYTPQNRSKDNGRVVVEGVGNLMHHIARCCQPIPGDEIVGFITQGRGISVHRADCEQLAELRSHAPERIVDAVWGESYSAGYSLVVRVVANDRSGLLRDITTILANEKVNVLGVASRSDTKQQLATIDMTIEIYNLQVLGRVLGKLNQVPDVIDARRLHGS
>NZ_CP041435.1|WP_000987944.1|1084439_1084805_-|6-carboxytetrahydropterin-synthase-QueD
MMSTTLFKDFTFEAAHRLPHVPEGHKCGRLHGHSFMVRLEITGEVDPHTGWIIDFAELKAAFKPTYERLDHHYLNDIPGLENPTSEVLAKWIWDQVKPVVPLLSAVMVKETCTAGCIYRGE
>NZ_CP041435.1|WP_000211933.1|1085120_1086920_+|NADPH-dependent-assimilatory-sulfite-reductase-flavoprotein-subunit
MTTQVPPSALLPLNPEQLARLQAATTDLTPTQLAWVSGYFWGVLNQQPAALAATPAPAAEMPGITIISASQTGNARRVAEALRDDLLTAKLNVKLVNAGDYKFKQIASEKLLIVVTSTQGEGEPPEEAVALHKFLFSKKAPKLENTAFAVFSLGDSSYEFFCQSGKDFDSKLAELGGERLLDRVDADVEYQAAASEWRARVVDALKSRAPVAAPSQSVATGAVNEIHTSPYSKDAPLVASLSVNQKITGRNSEKDVRHIEIDLGDSGLRYQPGDALGVWYQNDPALVKELVELLWLKGDEPVTVEGKTLPLNEALQWHFELTVNTANIVENYATLTRSETLLPLVGDKAKLQHYAATTPIVDMVRFSPAQLDAEALINLLRPLTPRLYSIASSQAEVENEVHVTVGVVRYDVEGRARAGGASSFLADRVEEEGELRVFIEHNDNFRLPANPETPVIMIGPGTGIAPFRAFMQQRAADEAPGKNWLFFGNPHFTEDFLYQVEWQRYVKEGVLTRIDLAWSRDQKEKVYVQDKLREQGAELWRWINDGAHIYVCGDANRMAKDVEQALLEVIAEFGGMDTEAADEFLSELRVERRYQRDVY
>NZ_CP041435.1|WP_001290706.1|1086919_1088632_+|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit
MSEKHPGPLVVEGKLTDAERMKLESNYLRGTIAEDLNDGLTGGFKGDNFLLIRFHGMYQQDDRDIRAERAEQKLEPRHAMLLRCRLPGGVITTKQWQAIDKFAGENTIYGSIRLTNRQTFQFHGILKKNVKPVHQMLHSVGLDALATANDMNRNVLCTSNPYESQLHAEAYEWAKKISEHLLPRTRAYAEIWLDQEKVATTDEEPILGQTYLPRKFKTTVVIPPQNDIDLHANDMNFVAIAENGKLVGFNLLVGGGLSIEHGNKKTYARTASEFGYLPLEHTLAVAEAVVTTQRDWGNRTDRKNAKTKYTLERVGVETFKAEVERRAGIKFEPIRPYEFTGRGDRIGWVKGIDDNWHLTLFIENGRILDYPGRPLKTGLLEIAKIHKGDFRITANQNLIIAGVPESEKAKIEKIAKESGLMNAVTPQRENSMACVSFPTCPLAMAEAERFLPSFIDNIDNLMAKHGVSDEHIVMRVTGCPNGCGRAMLAEVGLVGKAPGRYNLHLGGNRIGTRIPRMYKENITEPEILASLDELIGRWAKEREAGEGFGDFTVRAGIIRPVLDPARDLWD
>NZ_CP041435.1|WP_000039856.1|1088705_1089440_+|phosphoadenosine-phosphosulfate-reductase
MSKLDLNALNELPKVDRILALAETNAELEKLDAEGRVAWALENLPGEYVLSSSFGIQAAVSLHLVNQIRPDIPVILTDTGYLFPETYRFIDELTDKLKLNLKVYRATESAAWQEARYGKLWEQGVEGIEKYNDINKVEPMNRALKELNAQTWFAGLRREQSGSRANLPVLAIQRGVFKVLPIIDWDNRTIYQYLQKHGLKYHPLWDEGYLSVGDTHTTRKWEPGMAEEETRFFGLKRECGLHEG
>NZ_CP041435.1|WP_000956458.1|1089704_1089857_+|type-I-toxin-antitoxin-system-Hok-family-toxin
MLTKYALVAIIVLCCTVLGFTLMVGDSLCELSIRERGMEFKAVLAYESKK
>NZ_CP041435.1|WP_001233935.1|1090050_1092750_+|CRISPR-associated-helicase/endonuclease-Cas3
MRKYPLSLLKDKNIVTFFDFWGKTRRGEKDGGDDYHLLCWHSLDVAAMGYLMVKRNCFGLADYFRQLGISDKEQAAQFFAWLLCWHDIGKFARSFQQLYLPPELKIQEGARKNYEKISHSTLGYWLWNHYLSECQELLPSSSLSPRKLRRVIEMWMPVTTGHHGQPPDRMDELDNFLPEDKAAARDFLLEIKPLFPLIEIPAFWDDDEGIELIKHLSWYISATVVLADWTGSSTRFFPRVAHPMDIKGYWQKTLIQAQNALTVFPLKAKVAPFNGINTLFPFIENPTPLQQKVLDLDISQQGPQLFILEDVTGAGKTEAALILAHRLIAAGKAQGLFFGLPTMATANAMYDRLVKTWLAFYSPESRPSLVLAHSARTLMDRFNESLWSGDLVGSEEPDEQTFSQGCAAWFADSNKKALLAEIGVGTLDQAMMAVMPFKHNNLRLLGLSNKILLADEIHACDAYMSCILEGLIERQARGGNSVILLSATLSQQQRDKLVAAFARGTEGQQEAPFLEKDDYPWLTHVTKSDVNSHRVATRKDVERSVSVGWLHSEQECIARIESAVSQGKCIAWIRNSVDDAIKVHRQLLARGVIPASSLSLFHSRFAFSDRQRIETETLARFGKYCSLQRASQVIVCTQVIEQSVDIDLDEMISDLAPVDLLIQRAGRLQRHIRDINGQLKRDGKDERSPPELLILAPVWDDSPGDEWFGSAMRNSAFVYPDHGRIWLTQRVLREQGAIQMPHSARLLIESVYGEGVVMPEGFARSEQEQVGKYYCDRSMAKKFVLNFRPGYAANINDYLPEKLSTRLAEESVSLWLATCIDGVLKPYAIGAHAWEMSVVRVRRSWWKKHRDEFSLLEGDTFRQWCVEQRQDPEMANVILVTNDASCGYSATEGLIGKVD
>NZ_CP041435.1|WP_001406967.1|1092847_1094410_+|type-I-E-CRISPR-associated-protein-Cse1/CasA
MNSFSLLTTPWLPVRFKDGTTGKLAPVDLADENVVDIAAPRADLQGAAWQFLLGLLQTSFAPKDHRRWDDIWEDGLEAEKLREALLSLEHAFQFGPDSPSFMQDFDELKVKATSIASLLPDAPGKQTKERNTDHFIKRDTTQHLCLHCVPLALFSIQLNAPIGGRGYYPGLRGGGPLTTLIELLEYQGNQQTPLWRKLWLNIMPQDEADLPLPKTFDDLVFPWLAPTRTSELDGAVVTDEQVNKLQAYWGMPRRIRIDFKTTSIGNCDICGRQSDALLGLMSLKNYGVQYVMWRHPLTPYRLPLKEGGDFYSVKPQPGGLIWRDWLGLIEVGNSKNNTELPAQVVKLLNASNLKQTRVGLWGFGFDFEDMKVRCWYEHHFPLLLNKKEDLIPKLRLAAQAASHFLSLLHRALKEAWFSEKKTTKLDFGFVDIDFWNKTQHRFLRLVRQIEEGQDPDELLGKWQKEMWLFARQDFDDRVFTNPYEPVDLERVMTARKKYFTTSAEKQNANAAREKKQEAAE
>NZ_CP041435.1|WP_000029345.1|1094406_1094940_+|type-I-E-CRISPR-associated-protein-Cse2/CasB
MSIVKEEHKVALRKWHEELQDKRGERASLRRSTTVNDVCMTDGFRLFLKNRQIKWQDEPEWRITALALIAAVSANVKAIDERQPFAAQLAAVMSKGRFTRLLAVKTPDDLLRQLRRAVRLLNGSVNLDSLAEGVFRWCQESDDLLNHHRRQQRSTEFIRIRWALEYYQAGDADNEQN
>NZ_CP041435.1|WP_001406966.1|1094954_1096028_+|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC
MTTFIQLHLLTAYPAANLNRDDSGSPKTVILGGATRLRVSSQSLKRAWRTSELFEQALAGHIGIRSGRIAREAATILIEKGIEDKKAIEWAVEIADYLGKAKKDKKQKNDKKPKDPLTSAETEQLVHISPAEFDAVKALAHQLAEEKRAPKEEDLALLRKDRMAVDIAMFGRMLAKKPGFNVEAACQVAHAFGVSETIVENDFFTAVDDLRLASEDSGAGHVDETGFGSALFYTYICIDKDLLVKNLGGDEALANQTLRAFTEAALKVSPTGKQNSFASRAYASWALAEKGTEQPRSLAAAFYEPINGTGQLDVAVQRITTLRENMNTVYEQKTEYASFDVMNKQGSMKDVLDFICA
>NZ_CP041435.1|WP_000085053.1|1096038_1096785_+|type-I-E-CRISPR-associated-protein-Cas5/CasD
MSQYLIFQLHGPMASWGVDAPGEVRHTHELPSRSALLGLLAAGVGIRRDDTERLNAFNRHYSLVVCASRNPRWARDYHTIQMPKEVRKARYFSRREELSDPDLLSAIISRRDYYTDAWWMVAVATTADAPYSLEQLQGGLRHPVFPLYLGRKSHPLALPLAPLLLEGNASDVLRNAYQQYQDHFHDLKVSLPKLQDECWWEGEHDGLVVSKILRRRDVPLNRQQWLFGERTVNQGPWLSKEEPCTSQE

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Crispr_ID: NZ_CP041435_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP041435_3

1098724-1099363

TypeI-E

I-E

Consensus_repeat	Method
GTGTTCCCCGCGCCAGCGGGGATAAACCG	PILER-CR
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CRISPRCasFinder
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CRT

10 spacers

cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3

The CRISPR arrays of NZ_CP041435_3

>merge|NZ_CP041435|3|1098724-1099363|PILER-CR,CRISPRCasFinder,CRT
GTGTTCCCCGCGCCAGCGGGGATAAACCGCGACAAAATTCTCAAAACTCGATCAGGAAAATGTGTTCCCCGCGCCAGCGGGGATAAACCGCCACCGTTTTCGCCCACCAGGGCGCACAACCCGTGTTCCCCGCGCCAGCGGGGATAAACCGGAAAAAGAGAAGGTAGAGAAAGCGGAATCTGGGTGTTCCCCGCGCCAGCGGGGATAAACCGTACGCTTACACAACGGGCGAATATTTTAACGGGTGTTCCCCGCGCCAGCGGGGATAAACCGGAACCCAATAGTGAAATACAGCATCATTTTTTGTGTTCCCCGCGCCAGCGGGGATAAACCGACCTGGAGGCGAAAAAGGCGCTTCGACGTAAAGTGTTCCCCGCGCCAGCGGGGATAAACCGGAGGCCTATATCTCTAACCGCATCGGGCTGCGCGTGTTCCCCGCGCCAGCGGGGATAAACCGGGGCAAATATAAATTCCAGCGTGCTTCATGAAGTGTTCCCCGCGCCAGCGGGGATAAACCGGGGCAAATATAAATTCCAGCGTGCTTCATGAAGTGTTCCCCGCGCCAGCGGGGATAAACCGCTGCGTAGCGACCTTTGCTCTCAATTTCGTTGGTGTTCCCCGCGCCAGCGGGGATAAACCG

>NZ_CP041435|3|2|1098724-1099363|PILER-CR
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGACAAAATTCTCAAAACTCGATCAGGAAAAT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CCACCGTTTTCGCCCACCAGGGCGCACAACCC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GAAAAAGAGAAGGTAGAGAAAGCGGAATCTGG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TACGCTTACACAACGGGCGAATATTTTAACGG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GAACCCAATAGTGAAATACAGCATCATTTTTT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ACCTGGAGGCGAAAAAGGCGCTTCGACGTAAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GAGGCCTATATCTCTAACCGCATCGGGCTGCGC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GGGCAAATATAAATTCCAGCGTGCTTCATGAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GGGCAAATATAAATTCCAGCGTGCTTCATGAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CTGCGTAGCGACCTTTGCTCTCAATTTCGTTG
GTGTTCCCCGCGCCAGCGGGGATAAACCG

>NZ_CP041435|3|3|1098724-1099363|CRISPRCasFinder
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGACAAAATTCTCAAAACTCGATCAGGAAAAT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CCACCGTTTTCGCCCACCAGGGCGCACAACCC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GAAAAAGAGAAGGTAGAGAAAGCGGAATCTGG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TACGCTTACACAACGGGCGAATATTTTAACGG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GAACCCAATAGTGAAATACAGCATCATTTTTT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ACCTGGAGGCGAAAAAGGCGCTTCGACGTAAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GAGGCCTATATCTCTAACCGCATCGGGCTGCGC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GGGCAAATATAAATTCCAGCGTGCTTCATGAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GGGCAAATATAAATTCCAGCGTGCTTCATGAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CTGCGTAGCGACCTTTGCTCTCAATTTCGTTG
GTGTTCCCCGCGCCAGCGGGGATAAACCG

>NZ_CP041435|3|2|1098724-1099363|CRT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGACAAAATTCTCAAAACTCGATCAGGAAAAT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CCACCGTTTTCGCCCACCAGGGCGCACAACCC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GAAAAAGAGAAGGTAGAGAAAGCGGAATCTGG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TACGCTTACACAACGGGCGAATATTTTAACGG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GAACCCAATAGTGAAATACAGCATCATTTTTT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ACCTGGAGGCGAAAAAGGCGCTTCGACGTAAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GAGGCCTATATCTCTAACCGCATCGGGCTGCGC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GGGCAAATATAAATTCCAGCGTGCTTCATGAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GGGCAAATATAAATTCCAGCGTGCTTCATGAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CTGCGTAGCGACCTTTGCTCTCAATTTCGTTG
GTGTTCCCCGCGCCAGCGGGGATAAACCG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP041435.1\|WP_000039856.1\|1088705_1089440_+\|phosphoadenosine-phosphosulfate-reductase	unknown	unknown	gnl\|CDD\|234997
NZ_CP041435.1\|WP_000085053.1\|1096038_1096785_+\|type-I-E-CRISPR-associated-protein-Cas5/CasD	cas5	cd09645_cas5_CAS-I-E	gnl\|CDD\|187776
NZ_CP041435.1\|WP_000490440.1\|1099445_1100483_-\|alkaline-phosphatase-isozyme-conversion-aminopeptidase	unknown	unknown	gnl\|CDD\|182299
NZ_CP041435.1\|WP_000144848.1\|1097413_1098337_+\|type-I-E-CRISPR-associated-endonuclease-Cas1	cas1	cd09719_cas1_CAS-I-E	gnl\|CDD\|274693
NZ_CP041435.1\|WP_001246104.1\|1103726_1104050_+\|DUF3561-family-protein	unknown	unknown	gnl\|CDD\|371891
NZ_CP041435.1\|WP_000517476.1\|1104243_1104555_+\|cell-division-protein-FtsB	unknown	unknown	gnl\|CDD\|179156
NZ_CP041435.1\|WP_001219242.1\|1105283_1105763_+\|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase	unknown	unknown	gnl\|CDD\|178851
NZ_CP041435.1\|WP_001233935.1\|1090050_1092750_+\|CRISPR-associated-helicase/endonuclease-Cas3	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|224124
NZ_CP041435.1\|WP_000956458.1\|1089704_1089857_+\|type-I-toxin-antitoxin-system-Hok-family-toxin	unknown	unknown	gnl\|CDD\|366840
NZ_CP041435.1\|WP_001406966.1\|1094954_1096028_+\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	cas7	cd09646_cas7_CAS-I-E	gnl\|CDD\|273843
NZ_CP041435.1\|WP_000029345.1\|1094406_1094940_+\|type-I-E-CRISPR-associated-protein-Cse2/CasB	cse2gr11	cd09670_cse2gr11_CAS-I-E	gnl\|CDD\|274193
NZ_CP041435.1\|WP_000281423.1\|1096766_1097417_+\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	cas6e	cd09664_cas6e_CAS-I-E	gnl\|CDD\|273869
NZ_CP041435.1\|WP_001090346.1\|1101644_1103072_+\|sulfate-adenylyltransferase-subunit-CysN	unknown	unknown	gnl\|CDD\|235349
NZ_CP041435.1\|WP_000372108.1\|1100734_1101643_+\|sulfate-adenylyltransferase-subunit-CysD	unknown	unknown	gnl\|CDD\|235375
NZ_CP041435.1\|WP_000568943.1\|1105759_1106809_+\|tRNA-pseudouridine(13)-synthase-TruD	unknown	unknown	gnl\|CDD\|234884
NZ_CP041435.1\|WP_001406967.1\|1092847_1094410_+\|type-I-E-CRISPR-associated-protein-Cse1/CasA	cas8e	cd09669_cas8e_CAS-I-E	gnl\|CDD\|274192
NZ_CP041435.1\|WP_000246136.1\|1104573_1105284_+\|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	unknown	unknown	gnl\|CDD\|234670
NZ_CP041435.1\|WP_000063176.1\|1098333_1098627_+\|type-I-E-CRISPR-associated-endoribonuclease-Cas2	cas2	cd09648_cas2_CAS-I-E	gnl\|CDD\|236930
NZ_CP041435.1\|WP_001295182.1\|1106789_1107551_+\|5'/3'-nucleotidase-SurE	unknown	unknown	gnl\|CDD\|234732
NZ_CP041435.1\|WP_001173673.1\|1103071_1103677_+\|adenylyl-sulfate-kinase	unknown	unknown	gnl\|CDD\|179661

Protein	Function_ID	Function_description	E-value
NZ_CP041435.1\|WP_000039856.1\|1088705_1089440_+\|phosphoadenosine-phosphosulfate-reductase	gnl\|CDD\|234997	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase.	1.3479e-137
NZ_CP041435.1\|WP_000085053.1\|1096038_1096785_+\|type-I-E-CRISPR-associated-protein-Cas5/CasD	gnl\|CDD\|187776	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas5 is a RAMP superfamily protein; Subunit of the Cascade complex.	1.27305e-47
NZ_CP041435.1\|WP_000490440.1\|1099445_1100483_-\|alkaline-phosphatase-isozyme-conversion-aminopeptidase	gnl\|CDD\|182299	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional.	0
NZ_CP041435.1\|WP_000144848.1\|1097413_1098337_+\|type-I-E-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|274693	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the ECOLI subtype of CRISPR/Cas system.	1.03875e-156
NZ_CP041435.1\|WP_001246104.1\|1103726_1104050_+\|DUF3561-family-protein	gnl\|CDD\|371891	pfam12084, DUF3561, Protein of unknown function (DUF3561). This family of proteins is functionally uncharacterized. This protein is found in bacteria. Proteins in this family are about 110 amino acids in length.	1.22003e-52
NZ_CP041435.1\|WP_000517476.1\|1104243_1104555_+\|cell-division-protein-FtsB	gnl\|CDD\|179156	PRK00888, ftsB, cell division protein FtsB; Reviewed.	5.55235e-62
NZ_CP041435.1\|WP_001219242.1\|1105283_1105763_+\|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase	gnl\|CDD\|178851	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed.	1.56248e-104
NZ_CP041435.1\|WP_001233935.1\|1090050_1092750_+\|CRISPR-associated-helicase/endonuclease-Cas3	gnl\|CDD\|224124	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms].	1.37827e-176
NZ_CP041435.1\|WP_000956458.1\|1089704_1089857_+\|type-I-toxin-antitoxin-system-Hok-family-toxin	gnl\|CDD\|366840	pfam01848, HOK_GEF, Hok/gef family.	8.32243e-12
NZ_CP041435.1\|WP_001406966.1\|1094954_1096028_+\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	gnl\|CDD\|273843	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family is represented by CT1975 of Chlorobium tepidum and is part of the Ecoli subtype of CRISPR/Cas locis. It is designated Cse4, for CRISPR/Cas Subtype Ecoli protein 4.	1.27421e-145
NZ_CP041435.1\|WP_000029345.1\|1094406_1094940_+\|type-I-E-CRISPR-associated-protein-Cse2/CasB	gnl\|CDD\|274193	TIGR02548, CRISPR_system_Cascade_subunit_CasB, CRISPR type I-E/ECOLI-associated protein CasB/Cse2. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model family is found in Ecoli subtype CRISPR/Cas regions of many bacteria, most of which are mesophiles, and not in Archaea. It was designated Cse2 originally, and renamed CasB based on its characterization in the CASCADE complex.	6.64549e-30
NZ_CP041435.1\|WP_000281423.1\|1096766_1097417_+\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	gnl\|CDD\|273869	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model family, represented by CT1974 from Chlorobium tepidum, is found in the Ecoli subtype of CRISPR/Cas regions and is designated Cse3 (CRISPR/Cas Subtype Ecoli protein 3). The representative of this family from Thermus thermophilus HB8 (TTHB192) has been crystallized and found to have a structure consisting of two domains with opposing parallel beta-sheets known as a beta-sheet platform. This structure is similar to those found in the Sex-lethal protein and poly(A)-binding protein. This structure is consistent with an RNA-binding function.	1.48092e-91
NZ_CP041435.1\|WP_001090346.1\|1101644_1103072_+\|sulfate-adenylyltransferase-subunit-CysN	gnl\|CDD\|235349	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional.	0
NZ_CP041435.1\|WP_000372108.1\|1100734_1101643_+\|sulfate-adenylyltransferase-subunit-CysD	gnl\|CDD\|235375	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD.	0
NZ_CP041435.1\|WP_000568943.1\|1105759_1106809_+\|tRNA-pseudouridine(13)-synthase-TruD	gnl\|CDD\|234884	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed.	0
NZ_CP041435.1\|WP_001406967.1\|1092847_1094410_+\|type-I-E-CRISPR-associated-protein-Cse1/CasA	gnl\|CDD\|274192	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model family, represented by CT1972 from Chlorobium tepidum, is found in Ecoli subtype CRISPR/Cas regions of many bacteria, most of which are mesophiles, and not in Archaea. It is designated Cse1.	1.92483e-165
NZ_CP041435.1\|WP_000246136.1\|1104573_1105284_+\|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	gnl\|CDD\|234670	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase.	3.02844e-120
NZ_CP041435.1\|WP_000063176.1\|1098333_1098627_+\|type-I-E-CRISPR-associated-endoribonuclease-Cas2	gnl\|CDD\|236930	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional.	2.35543e-65
NZ_CP041435.1\|WP_001295182.1\|1106789_1107551_+\|5'/3'-nucleotidase-SurE	gnl\|CDD\|234732	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional.	1.92279e-150
NZ_CP041435.1\|WP_001173673.1\|1103071_1103677_+\|adenylyl-sulfate-kinase	gnl\|CDD\|179661	PRK03846, PRK03846, adenylylsulfate kinase; Provisional.	7.34447e-148

>NZ_CP041435.1|WP_000063176.1|1098333_1098627_+|type-I-E-CRISPR-associated-endoribonuclease-Cas2
MSMVVVVTENVPPRLRGRLAIWLLEVRAGVYVGDTSKRIREMIWQQITQLAGCGNVVMAWATNTESGFEFQTWGENRRIPVDLDGLRLVSFLPVDNQ
>NZ_CP041435.1|WP_000144848.1|1097413_1098337_+|type-I-E-CRISPR-associated-endonuclease-Cas1
MTFVPLSPIPLKDRTSMIFLQYGQIDVLDGAFVLIDKTGIRTHIPVGSVACIMLEPGTRVSHAAVHLAATVGTLLVWVGEAGVRVYSSGQPGGARADKLLYQAKLALTEDLRLKVVRKMYELRFREPPPARRSVDQLRGIEGSRVRQTYALLAKQYGVKWNGRKYDPKDWEKGDVVNRCISAATSCLYGISEAAVLAAGYAPTIGFIHSGKPLSFVYDIADIIKFDSVVPKAFEIAARQPAEPDKEVRLACRDIFRSTKLTGKLIPLIEEVLAAGEIEPPQPAPDMLPPAIPEPETLGDSGHRGRGG
>NZ_CP041435.1|WP_000281423.1|1096766_1097417_+|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE
MYLSRITLHTAQLLPAQLLHLVDRGEYVMHQWLWDLFPGGKERQFLYRREELQGAFRFFVLSQERPAESETFTIECRSFAPELRTGQSLCFNLRANPTICKAGKRHDLLMEAKRQVRGQAEGRDVWLHQQQAALDWLAAQGERSGFTLLDTSVDAYRQQQLRRENSRQLIQFSSVDYTGMLTVTDPGLFLQRLSQGYGKSRAFGCGLMLIKPGAEA
>NZ_CP041435.1|WP_000085053.1|1096038_1096785_+|type-I-E-CRISPR-associated-protein-Cas5/CasD
MSQYLIFQLHGPMASWGVDAPGEVRHTHELPSRSALLGLLAAGVGIRRDDTERLNAFNRHYSLVVCASRNPRWARDYHTIQMPKEVRKARYFSRREELSDPDLLSAIISRRDYYTDAWWMVAVATTADAPYSLEQLQGGLRHPVFPLYLGRKSHPLALPLAPLLLEGNASDVLRNAYQQYQDHFHDLKVSLPKLQDECWWEGEHDGLVVSKILRRRDVPLNRQQWLFGERTVNQGPWLSKEEPCTSQE
>NZ_CP041435.1|WP_001406966.1|1094954_1096028_+|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC
MTTFIQLHLLTAYPAANLNRDDSGSPKTVILGGATRLRVSSQSLKRAWRTSELFEQALAGHIGIRSGRIAREAATILIEKGIEDKKAIEWAVEIADYLGKAKKDKKQKNDKKPKDPLTSAETEQLVHISPAEFDAVKALAHQLAEEKRAPKEEDLALLRKDRMAVDIAMFGRMLAKKPGFNVEAACQVAHAFGVSETIVENDFFTAVDDLRLASEDSGAGHVDETGFGSALFYTYICIDKDLLVKNLGGDEALANQTLRAFTEAALKVSPTGKQNSFASRAYASWALAEKGTEQPRSLAAAFYEPINGTGQLDVAVQRITTLRENMNTVYEQKTEYASFDVMNKQGSMKDVLDFICA
>NZ_CP041435.1|WP_000029345.1|1094406_1094940_+|type-I-E-CRISPR-associated-protein-Cse2/CasB
MSIVKEEHKVALRKWHEELQDKRGERASLRRSTTVNDVCMTDGFRLFLKNRQIKWQDEPEWRITALALIAAVSANVKAIDERQPFAAQLAAVMSKGRFTRLLAVKTPDDLLRQLRRAVRLLNGSVNLDSLAEGVFRWCQESDDLLNHHRRQQRSTEFIRIRWALEYYQAGDADNEQN
>NZ_CP041435.1|WP_001406967.1|1092847_1094410_+|type-I-E-CRISPR-associated-protein-Cse1/CasA
MNSFSLLTTPWLPVRFKDGTTGKLAPVDLADENVVDIAAPRADLQGAAWQFLLGLLQTSFAPKDHRRWDDIWEDGLEAEKLREALLSLEHAFQFGPDSPSFMQDFDELKVKATSIASLLPDAPGKQTKERNTDHFIKRDTTQHLCLHCVPLALFSIQLNAPIGGRGYYPGLRGGGPLTTLIELLEYQGNQQTPLWRKLWLNIMPQDEADLPLPKTFDDLVFPWLAPTRTSELDGAVVTDEQVNKLQAYWGMPRRIRIDFKTTSIGNCDICGRQSDALLGLMSLKNYGVQYVMWRHPLTPYRLPLKEGGDFYSVKPQPGGLIWRDWLGLIEVGNSKNNTELPAQVVKLLNASNLKQTRVGLWGFGFDFEDMKVRCWYEHHFPLLLNKKEDLIPKLRLAAQAASHFLSLLHRALKEAWFSEKKTTKLDFGFVDIDFWNKTQHRFLRLVRQIEEGQDPDELLGKWQKEMWLFARQDFDDRVFTNPYEPVDLERVMTARKKYFTTSAEKQNANAAREKKQEAAE
>NZ_CP041435.1|WP_001233935.1|1090050_1092750_+|CRISPR-associated-helicase/endonuclease-Cas3
MRKYPLSLLKDKNIVTFFDFWGKTRRGEKDGGDDYHLLCWHSLDVAAMGYLMVKRNCFGLADYFRQLGISDKEQAAQFFAWLLCWHDIGKFARSFQQLYLPPELKIQEGARKNYEKISHSTLGYWLWNHYLSECQELLPSSSLSPRKLRRVIEMWMPVTTGHHGQPPDRMDELDNFLPEDKAAARDFLLEIKPLFPLIEIPAFWDDDEGIELIKHLSWYISATVVLADWTGSSTRFFPRVAHPMDIKGYWQKTLIQAQNALTVFPLKAKVAPFNGINTLFPFIENPTPLQQKVLDLDISQQGPQLFILEDVTGAGKTEAALILAHRLIAAGKAQGLFFGLPTMATANAMYDRLVKTWLAFYSPESRPSLVLAHSARTLMDRFNESLWSGDLVGSEEPDEQTFSQGCAAWFADSNKKALLAEIGVGTLDQAMMAVMPFKHNNLRLLGLSNKILLADEIHACDAYMSCILEGLIERQARGGNSVILLSATLSQQQRDKLVAAFARGTEGQQEAPFLEKDDYPWLTHVTKSDVNSHRVATRKDVERSVSVGWLHSEQECIARIESAVSQGKCIAWIRNSVDDAIKVHRQLLARGVIPASSLSLFHSRFAFSDRQRIETETLARFGKYCSLQRASQVIVCTQVIEQSVDIDLDEMISDLAPVDLLIQRAGRLQRHIRDINGQLKRDGKDERSPPELLILAPVWDDSPGDEWFGSAMRNSAFVYPDHGRIWLTQRVLREQGAIQMPHSARLLIESVYGEGVVMPEGFARSEQEQVGKYYCDRSMAKKFVLNFRPGYAANINDYLPEKLSTRLAEESVSLWLATCIDGVLKPYAIGAHAWEMSVVRVRRSWWKKHRDEFSLLEGDTFRQWCVEQRQDPEMANVILVTNDASCGYSATEGLIGKVD
>NZ_CP041435.1|WP_000956458.1|1089704_1089857_+|type-I-toxin-antitoxin-system-Hok-family-toxin
MLTKYALVAIIVLCCTVLGFTLMVGDSLCELSIRERGMEFKAVLAYESKK
>NZ_CP041435.1|WP_000039856.1|1088705_1089440_+|phosphoadenosine-phosphosulfate-reductase
MSKLDLNALNELPKVDRILALAETNAELEKLDAEGRVAWALENLPGEYVLSSSFGIQAAVSLHLVNQIRPDIPVILTDTGYLFPETYRFIDELTDKLKLNLKVYRATESAAWQEARYGKLWEQGVEGIEKYNDINKVEPMNRALKELNAQTWFAGLRREQSGSRANLPVLAIQRGVFKVLPIIDWDNRTIYQYLQKHGLKYHPLWDEGYLSVGDTHTTRKWEPGMAEEETRFFGLKRECGLHEG
>NZ_CP041435.1|WP_000490440.1|1099445_1100483_-|alkaline-phosphatase-isozyme-conversion-aminopeptidase
MFSALRHRTAALALGVCFILPVHASSPKPGDFANTQARHIATFFPGRMTGTPAEMLSADYIRQQFQQMGYRSDIRTFNSRYIYTASDNRKSWHNVTGSTVIAAHEGKAPQQIIIMAHLDTYAPLSDADADANLGGLTLQGMDDNAAGLGVMLELAERLKNTPTEYGIRFVATSGEEEGKLGAENLLKRMSDTEKKNTLLVINLDNLIVGDKLYFNSGVKTPEAVRKLTRDRALAIARSQGIAATTNPGLNKNYPKGTGCCNDAEIFDKAGIAVLSVEATNWNLGNKDGYQQRAKTAAFPAGNSWHDVRFDNQQHIDKALPGRIERRCRDVMRIMLPLVKELAKAS
>NZ_CP041435.1|WP_000372108.1|1100734_1101643_+|sulfate-adenylyltransferase-subunit-CysD
MDQIRLTHLRQLEAESIHIIREVAAEFSNPVMLYSIGKDSSVMLHLARKAFYPGTLPFPLLHVDTGWKFREMYEFRDRTAKAYGCELLVHKNPEGVAMGINPFVHGSAKHTDIMKTEGLKQALNKYGFDAAFGGARRDEEKSRAKERIYSFRDRFHRWDPKNQRPELWHNYNGQINKGESIRVFPLSNWTEQDIWQYIWLENIDIVPLYLAAERPVLERDGMLMMIDDNRIDLQPGEVIKKRMVRFRTLGCWPLTGAVESNAQTLPEIIEEMLVSTTSERQGRVIDRDQAGSMELKKRQGYF
>NZ_CP041435.1|WP_001090346.1|1101644_1103072_+|sulfate-adenylyltransferase-subunit-CysN
MNTALAQQIANEGGVEAWMIAQQHKSLLRFLTCGSVDDGKSTLIGRLLHDTRQIYEDQLSSLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFSTEKRKFIIADTPGHEQYTRNMATGASTCELAILLIDARKGVLDQTRRHSFISTLLGIKHLVVAINKMDLVDYSEETFTRIREDYLTFAEQLPGNLDIRFVPLSALEGDNVASQSESMPWYSGPTLLEVLETVEIQRVVDAQPMRFPVQYVNRPNLDFRGYAGTLASGRVEVGQRVKVLPSGVESNVARIVTFDGDREEAFAGEAITLVLTDEIDISRGDLLLAADEALPAVQSASVDVVWMAEQPLSPGQSYDIKIAGKKTRARIDGIRYQVDINNLTQREVENLPLNGIGLVDLTFDEPLVLDRYQQNPVTGGLIFIDRLSNVTVGAGMVHEPVSQATAAPSEFSAFELELNALVRRHFPHWGARDLLGDK
>NZ_CP041435.1|WP_001173673.1|1103071_1103677_+|adenylyl-sulfate-kinase
MALHDENVVWHSHPVTVQQRELHHGHRGVVLWFTGLSGSGKSTVAGALEEALHKLGVSTYLLDGDNVRHGLCSDLGFSDADRKENIRRVGEVANLMVEAGLVVLTAFISPHRAERQMVRERVGEGRFIEVFVDTPLAICEARDPKGLYKKARAGELRNFTGIDSVYEAPESAEIHLNGEQLVTNLVQQLLDLLRQNDIIRS
>NZ_CP041435.1|WP_001246104.1|1103726_1104050_+|DUF3561-family-protein
MRNSHNITLTNNDSLTEDEETTWSLPGAVVGFISWLFALAMPMLIYGSNTLFFFIYTWPFFLALMPVAVVVGIALHSLMDGKLRYSIVFTLVTVGIMFGALFMWLLG
>NZ_CP041435.1|WP_000517476.1|1104243_1104555_+|cell-division-protein-FtsB
MGKLTLLLLAILVWLQYSLWFGKNGIHDYTRVNDDVAAQQATNAKLKARNDQLFAEIDDLNGGQEALEERARNELSMTRPGETFYRLVPDASKRAQSAGQNNR
>NZ_CP041435.1|WP_000246136.1|1104573_1105284_+|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase
MATTHLDVCAVVPAAGFGRRMQTECPKQYLSIGNQTILEHSVHALLAHPRVKRVVIAISPGDSRFAQIPLANHPQITVVDGGDERADSVLAGLKAAGDAQWVLVHDAARPCLHQDDLARLLALSETSRTGGILAAPVRDTMKRAEPGKNAIAHTVDRNGLWHALTPQFFPRELLHDCLTRALNEGATITDEASALEYCGFHPQLVEGRADNIKVTRPEDLALAEFYLTRTIHQENT
>NZ_CP041435.1|WP_001219242.1|1105283_1105763_+|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase
MRIGHGFDVHAFGGEGPIIIGGVRIPYEKGLLAHSDGDVALHALTDALLGAAALGDIGKLFPDTDPAFKGADSRELLREAWRRIQAKGYTLGNVDVTIIAQAPKMLPHIPQMRVFIAEDLGCHMDDVNVKATTTEKLGFTGRGEGIACEAVALLIKATK
>NZ_CP041435.1|WP_000568943.1|1105759_1106809_+|tRNA-pseudouridine(13)-synthase-TruD
MIEFDNLTYLHGKPQGTGLLKANPEDFVVVEDLGFEPDGEGEHILVRILKNGCNTRFVADALAKFLKIHAREVSFAGQKDKHAVTEQWLCARVPGKEMPDLSAFQLEGCQVLEYARHKRKLRLGALKGNAFTLVLREVSNRDDVEQRLIDICVKGVPNYFGAQRFGIGGSNLQGAQRWAQTNTPVRDRNKRSFWLSAARSALFNQIVAERLKKADVNQVVDGDALQLAGRGSWFVATTEELAELQRRVNDKELMITAALPGSGEWGTQREALAFEQAAVAAETELQALLVREKVEAARRAMLLYPQQLSWNWWDDVTVEIRFWLPAGSFATSVVRELINTTGDYAHIAE
>NZ_CP041435.1|WP_001295182.1|1106789_1107551_+|5'/3'-nucleotidase-SurE
MRILLSNDDGVHAPGIQTLAKALREFADVQVVAPDRNRSGASNSLTLESSLRTFTFENGDIAVQMGTPTDCVYLGVNALMRPRPDIVVSGINAGPNLGDDVIYSGTVAAAMEGRHLGFPALAVSLDGHKHYDTAAAVTCSILRALCKEPLRTGRILNINVPDLPLDQIKGIRVTRCGTRHPADQVIPQQDPRGNTLYWIGPPGGKCDAGPGTDFAAVDEGYVSITPLHVDLTAHSAQDVVSDWLNSVGVGTQW

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Crispr_ID: NZ_CP041435_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP041435_4

2255222-2255345

Orphan

Consensus_repeat	Method
CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP041435_4

>merge|NZ_CP041435|4|2255222-2255345|CRISPRCasFinder
CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTACGGACGCAGGATGGTGCGTTCAATTGGACTCGAACCAACGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA

>NZ_CP041435|4|4|2255222-2255345|CRISPRCasFinder
CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA	CGGACGCAGGATGGTGCGTTCAATTGGACTCGAACCAA
CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP041435.1\|WP_000269501.1\|2261988_2262921_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|182948
NZ_CP041435.1\|WP_000102278.1\|2264241_2264331_+\|stress-response-protein-YnhF	unknown	unknown	unknown
NZ_CP041435.1\|WP_000190982.1\|2262917_2263943_-\|HTH-type-transcriptional-repressor-PurR	unknown	unknown	gnl\|CDD\|236739
NZ_CP041435.1\|WP_000587560.1\|2252227_2253040_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|182159
NZ_CP041435.1\|WP_000716922.1\|2253051_2254656_-\|FAD-NAD(P)-binding-protein	unknown	unknown	gnl\|CDD\|182134
NZ_CP041435.1\|WP_001297805.1\|2250071_2250710_+\|YdhW-family-putative-oxidoreductase-system-protein	unknown	unknown	gnl\|CDD\|182160
NZ_CP041435.1\|WP_000493947.1\|2258544_2259186_+\|riboflavin-synthase	unknown	unknown	gnl\|CDD\|183846
NZ_CP041435.1\|WP_000007283.1\|2265811_2266393_-\|superoxide-dismutase-[Fe]	unknown	unknown	gnl\|CDD\|182534
NZ_CP041435.1\|WP_001070230.1\|2247309_2247936_+\|ferredoxin-like-protein	unknown	unknown	gnl\|CDD\|182135
NZ_CP041435.1\|WP_000534291.1\|2255659_2256916_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|137602
NZ_CP041435.1\|WP_000528342.1\|2246644_2246854_+\|fumarate-hydratase-FumD	unknown	unknown	gnl\|CDD\|182359
NZ_CP041435.1\|WP_000701040.1\|2264496_2265666_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|225371
NZ_CP041435.1\|WP_001182362.1\|2260664_2261876_-\|Bcr/CflA-family-multidrug-efflux-MFS-transporter	unknown	unknown	gnl\|CDD\|182924
NZ_CP041435.1\|WP_001069997.1\|2251438_2252224_+\|thiosulfate-reductase-cytochrome-B-subunit	unknown	unknown	gnl\|CDD\|184968
NZ_CP041435.1\|WP_001174942.1\|2256956_2258330_-\|multidrug-efflux-MATE-transporter-MdtK	unknown	unknown	gnl\|CDD\|234981
NZ_CP041435.1\|WP_001295403.1\|2244675_2246088_-\|pyruvate-kinase-PykF	unknown	unknown	gnl\|CDD\|181699
NZ_CP041435.1\|WP_001310861.1\|2250773_2251442_+\|4Fe-4S-dicluster-domain-containing-protein	unknown	unknown	gnl\|CDD\|274451
NZ_CP041435.1\|WP_001273528.1\|2247956_2250059_+\|aldehyde-ferredoxin-oxidoreductase	unknown	unknown	gnl\|CDD\|236629
NZ_CP041435.1\|WP_000212657.1\|2254781_2255087_-\|monooxygenase	unknown	unknown	gnl\|CDD\|182975
NZ_CP041435.1\|WP_000098911.1\|2259225_2260374_-\|cyclopropane-fatty-acyl-phospholipid-synthase	unknown	unknown	gnl\|CDD\|183282

Protein	Function_ID	Function_description	E-value
NZ_CP041435.1\|WP_000269501.1\|2261988_2262921_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|182948	PRK11074, PRK11074, putative DNA-binding transcriptional regulator; Provisional.	0
NZ_CP041435.1\|WP_000190982.1\|2262917_2263943_-\|HTH-type-transcriptional-repressor-PurR	gnl\|CDD\|236739	PRK10703, PRK10703, HTH-type transcriptional repressor PurR.	0
NZ_CP041435.1\|WP_000587560.1\|2252227_2253040_+\|hypothetical-protein	gnl\|CDD\|182159	PRK09946, PRK09946, hypothetical protein; Provisional.	8.20825e-175
NZ_CP041435.1\|WP_000716922.1\|2253051_2254656_-\|FAD-NAD(P)-binding-protein	gnl\|CDD\|182134	PRK09897, PRK09897, FAD-NAD(P)-binding protein.	0
NZ_CP041435.1\|WP_001297805.1\|2250071_2250710_+\|YdhW-family-putative-oxidoreductase-system-protein	gnl\|CDD\|182160	PRK09947, PRK09947, YdhW family putative oxidoreductase system protein.	1.93584e-120
NZ_CP041435.1\|WP_000493947.1\|2258544_2259186_+\|riboflavin-synthase	gnl\|CDD\|183846	PRK13020, PRK13020, riboflavin synthase subunit alpha; Provisional.	2.24506e-123
NZ_CP041435.1\|WP_000007283.1\|2265811_2266393_-\|superoxide-dismutase-[Fe]	gnl\|CDD\|182534	PRK10543, PRK10543, superoxide dismutase [Fe].	3.77321e-138
NZ_CP041435.1\|WP_001070230.1\|2247309_2247936_+\|ferredoxin-like-protein	gnl\|CDD\|182135	PRK09898, PRK09898, ferredoxin-like protein.	6.99609e-140
NZ_CP041435.1\|WP_000534291.1\|2255659_2256916_+\|hypothetical-protein	gnl\|CDD\|137602	PRK09945, PRK09945, hypothetical protein; Provisional.	0
NZ_CP041435.1\|WP_000528342.1\|2246644_2246854_+\|fumarate-hydratase-FumD	gnl\|CDD\|182359	PRK10292, PRK10292, fumarate hydratase FumD.	2.11502e-34
NZ_CP041435.1\|WP_000701040.1\|2264496_2265666_+\|MFS-transporter	gnl\|CDD\|225371	COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism].	1.92383e-98
NZ_CP041435.1\|WP_001182362.1\|2260664_2261876_-\|Bcr/CflA-family-multidrug-efflux-MFS-transporter	gnl\|CDD\|182924	PRK11043, PRK11043, Bcr/CflA family multidrug efflux MFS transporter.	0
NZ_CP041435.1\|WP_001069997.1\|2251438_2252224_+\|thiosulfate-reductase-cytochrome-B-subunit	gnl\|CDD\|184968	PRK15006, PRK15006, thiosulfate reductase cytochrome B subunit; Provisional.	5.33298e-163
NZ_CP041435.1\|WP_001174942.1\|2256956_2258330_-\|multidrug-efflux-MATE-transporter-MdtK	gnl\|CDD\|234981	PRK01766, PRK01766, multidrug efflux protein; Reviewed.	0
NZ_CP041435.1\|WP_001295403.1\|2244675_2246088_-\|pyruvate-kinase-PykF	gnl\|CDD\|181699	PRK09206, PRK09206, pyruvate kinase PykF.	0
NZ_CP041435.1\|WP_001310861.1\|2250773_2251442_+\|4Fe-4S-dicluster-domain-containing-protein	gnl\|CDD\|274451	TIGR03149, cyt_nit_nrfC, cytochrome c nitrite reductase, Fe-S protein. Members of this protein family are the Fe-S protein, NrfC, of a cytochrome c nitrite reductase system for which the pentaheme cytochrome c protein, NrfB (family TIGR03146) is an unambiguous marker. Members of this protein family show similarity to other ferredoxin-like proteins, including a subunit of a polysulfide reductase. [Energy metabolism, Electron transport].	2.09652e-76
NZ_CP041435.1\|WP_001273528.1\|2247956_2250059_+\|aldehyde-ferredoxin-oxidoreductase	gnl\|CDD\|236629	PRK09849, PRK09849, putative oxidoreductase; Provisional.	0
NZ_CP041435.1\|WP_000212657.1\|2254781_2255087_-\|monooxygenase	gnl\|CDD\|182975	PRK11118, PRK11118, putative monooxygenase; Provisional.	1.12003e-64
NZ_CP041435.1\|WP_000098911.1\|2259225_2260374_-\|cyclopropane-fatty-acyl-phospholipid-synthase	gnl\|CDD\|183282	PRK11705, PRK11705, cyclopropane fatty acyl phospholipid synthase.	0

>NZ_CP041435.1|WP_000212657.1|2254781_2255087_-|monooxygenase
MATLLQLHFAFNGPFGDAMAEQLKPLAESINQEPGFLWKVWTESEKNHEAGGIYLFTDEKSALAYLEKHTARLKNLGVEEVVAKVFDVNEPLSQINQAKLA
>NZ_CP041435.1|WP_000716922.1|2253051_2254656_-|FAD-NAD(P)-binding-protein
MKKIAIVGAGPTGIYTLFSLLQQQTPLSISIFEQADEAGVGMPYSDEENSKMMLANIASIEIPPINCTYLEWLQKQEASHLQRYGVKKETLHDRQFLPRILLGEYFRDQFLRLVDQARQQKFAVAVYESCQVTDLQITNAGVMLATNQDLPSETFDLAVIATGHVWPDEEEATRTYFPSPWSGLMEAKVDACNVGIMGTSLSGLDAAMAVAIQHGSFIEDDKQHVVFNRDNASEKLNITLMSRTGILPEADFYCPIPYEPLHIVTDQALNAEIQKGEEGLLDRVFRLIVEEIKFADPDWSQRIALESLNVDSFAQAWFAERKQRDPFDWAEKNLQEVERNKREKHTVPWRYVILRLHEAVQEIVPHLNEHDHKRFSKGLARVFIDNYAAIPSESIRRLLALREAGIIHILALGEDYKMEINESRTVLKTEDNSYSFDVFIDARGQRPLKVKDIPFPGLREQLQKTGDEIPDVGEDYTLQQPEDIRGRVAFGALPWLMHDQPFVQGLTACAEIGEAMARAVVKPASRARRRLSFD
>NZ_CP041435.1|WP_000587560.1|2252227_2253040_+|hypothetical-protein
MIITRADLREWRIGAVMYRWFLRHFPRGGSYADIHHALIEEGYTDWAESLVEYAWKKWLADENFAHQEVSSMQKLATDPGEIPFCSQFARSDDHARIGCCEDNARIATAGYAAQIASMGYSVRIGSVGFNSHIGSSGERARVAVTGNSSRISSAGDSSRIANTGMRVRVCTLGERCHVASNGDLVQIASFGANARIANSGDNVHIIASGENSTVVSTGVVDSIILGPGGSAALAYHDGERVRFAVAIEGENNIRTGVRYRLNEQHQFVEC
>NZ_CP041435.1|WP_001069997.1|2251438_2252224_+|thiosulfate-reductase-cytochrome-B-subunit
MNPSQHAEQFQSQLANYVPQFTPEFWPVWLIIAGVLLVGMWLVLGLHALLRARGVKKSVTDYGEKIYLYCKAVRLWHWSNALLFVLLLASGLINHFALVGATAVKSLVAVHEVCGFLLLACWLGFVLINAVGGNGHHYRIRRQGWLERAAKQTRFYLFGIMQGEEHPFPATTQSKFNPLQQVAYVGVMYGLLPLLLLTGLLCLYPQAVGDVFPGVRYWLLQAHFALAFISLFFIFGHLYLCTTGRTPHETFKSMVDGYHRH
>NZ_CP041435.1|WP_001310861.1|2250773_2251442_+|4Fe-4S-dicluster-domain-containing-protein
MSFTRRKFVLGMGTVIFFTGSASSLLANTRQEKEVRYAMIHDESRCNGCNICARACRKTNHVPAQGSRLSIAHIPVTDNDNETQYHFFRQSCQHCEDAPCIDVCPTGASWRDEQGIVRVEKSQCIGCSYCIGACPYQVRYLNPVTKVADKCDFCAESRLAKGFPPICVSACPEHALIFGREDSPEIQAWLQQNKYYQYQLPGAGKPHLYRRFGQHLIKKENV
>NZ_CP041435.1|WP_001297805.1|2250071_2250710_+|YdhW-family-putative-oxidoreductase-system-protein
MNHRDELPLAKVSEVDEAKRQWLQGMRHPVDTVTEPEPAEILAEFIRQHSAAGQLVARAVFLSPPYSVAEEELSVLLESIKQNGDYADIACMTGSQDDYYYSTQAMSENYAAMSLQVVEQDICRAIAHAVRFECQTYPRPYKVAMLMQAPYYFQEAQIEAAIAAMDVAPEYADIRQVESSTAVLYLFSERFMTYGKAYGLCEWFEVEQFQNP
>NZ_CP041435.1|WP_001273528.1|2247956_2250059_+|aldehyde-ferredoxin-oxidoreductase
MANGWTGNILRVNLTTGNITLEDSSKFKSFVGGMGFGYKIMYDEVPPGTKPFDEANKLVFATGPLTGSGAPCSSRVNITSLSTFTKGNLVVDAHMGGFFAAQMKFAGYDVIIIEGKAKSPVWLKIKDDKVSLEKADFLWGKGTRATTEEICRLTSPETCVAAIGQAGENLVPLSGMLNSRNHSGGAGTGAIMGSKNLKAIAVEGTKGVNIADRQEMKRLNDYMMTELIGANNNHVVPSTPQSWAEYSDPKSRWTARKGLFWGAAEGGPIETGEIPPGNQNTVGFRTYKSVFDLGPAAEKYTVKMSGCHSCPIRCMTQMNIPRVKEFGVPSTGGNTCVANFVHTTIFPNGPKDFEDKDDGRVIGNLVGLNLFDDYGLWCNYGQLHRDFTYCYSKGVFKRVLPAEEYAEIRWDQLEAGDVNFIKDFYYRLAHRVGELSHLADGSYAIAERWNLGEEYWGYAKNKLWSPFGYPVHHANEASAQVGSIVNCMFNRDCMTHTHINFIGSGLPLKLQREVAKELFGSEDAYDETKNYTPINDAKIKYAKWSLLRVCLHNAVTLCNWVWPMTVSPLKSRNYRGDLALEAKFFKAITGEEMTQEKLDLAAERIFTLHRAYTVKLMQTKDMRNEHDLICSWVFDKDPQIPVFTEGTDKMDRDDMHASLTMFYKEMGWDPQLGCPTRETLQRLGLEDIAADLAAHNLLPV
>NZ_CP041435.1|WP_001070230.1|2247309_2247936_+|ferredoxin-like-protein
MNPVDRPLLDIGLTRLEFLRISGKGLAGLTIAPALLSLLGCKQEDIDSGTVGLINTPKGVLVTQRARCTGCHRCEISCTNFNDGSVGTFFSRIKIHRNYFFGDNGVGSGGGLYGDLNYTADTCRQCKEPQCMNVCPIGAITWQQKEGCITVDHKRCIGCSACTTACPWMMATVNTESKKSSKCVLCGECANACPTGALKIIEWKDITV
>NZ_CP041435.1|WP_000528342.1|2246644_2246854_+|fumarate-hydratase-FumD
MGNRTKEDELYREMCRVVGKVVLEMRDLGQEPKHIVIAGVLRTALANKRIQRSELEKQAMETVINALVK
>NZ_CP041435.1|WP_001295403.1|2244675_2246088_-|pyruvate-kinase-PykF
MKKTKIVCTIGPKTESEEMLAKMLDAGMNVMRLNFSHGDYAEHGQRIQNLRNVMSKTGKTAAILLDTKGPEIRTMKLEGGNDVSLKAGQTFTFTTDKSVIGNSEMVAVTYEGFTTDLSVGNTVLVDDGLIGMEVTAIEGNKVICKVLNNGDLGENKGVNLPGVSIALPALAEKDKQDLIFGCEQGVDFVAASFIRKRSDVIEIREHLKAHGGENIHIISKIENQEGLNNFDEILEASDGIMVARGDLGVEIPVEEVIFAQKMMIEKCIRARKVVITATQMLDSMIKNPRPTRAEAGDVANAILDGTDAVMLSGESAKGKYPLEAVSIMATICERTDRVMNSRLEFNNDNRKLRITEAVCRGAVETAEKLDAPLIVVATQGGKSARAVRKYFPDATILALTTNEKTAHQLVLSKGVVPQLVKEITSTDDFYRLGKELALQSGLAHKGDVVVMVSGALVPSGTTNTASVHVL
>NZ_CP041435.1|WP_000534291.1|2255659_2256916_+|hypothetical-protein
MGSDAKNLMSDGNVQIVKTGEVIGATQLTEGELIVEAGGRAENTVVTGAGWLKVATGGIAKCTQYGNNGTLSVSDGAIATDIVQSEGGAISLSTLATVNGRHPEGEFSVDQGYACGLLLENGGNLRVLEGHRAEKIILDQEGGLLVNGTTSAVVVDEGGELLVYPGGEASNCEINQGGVFMLAGKASDTLLAGGTMNNLGGEDSDTIVENGSIYRLGTDGLQLYSSGKTQNLSVNVGGRAEVHAGTLENAVIQGGTVILLSPTSADENFVVEEDRAPVELTGSVALLDGASMIIGYGADLQQSTITVQQGGVLILDGSTVKGDGVTFIVGNINLNGGKLWLITGAATHVQLKVKRLRGEGAICLQTSAKEISPDFINVKGEVTGDIHVEITDASRQTLCNALKLQPDEDGIGATLQPA
>NZ_CP041435.1|WP_001174942.1|2256956_2258330_-|multidrug-efflux-MATE-transporter-MdtK
MQKYISEARLLLALAIPVILAQIAQTAMGFVDTVMAGGYSATDMAAVAIGTSIWLPAILFGHGLLLALTPVIAQLNGSGRRERIAHQVRQGFWLAGFVSVLIMLVLWNAGYIIRSMENIDPALADKAVGYLRALLWGAPGYLFFQVARNQCEGLAKTKPGMVMGFIGLLVNIPVNYIFIYGHFGMPELGGVGCGVATAAVYWVMFLAMVSYIKRARSMRDIRNEKGTAKPDPAVMKRLIQLGLPIALALFFEVTLFAVVALLVSPLGIVDVAGHQIALNFSSLMFVLPMSLAAAVTIRVGYRLGQGSTLDAQTAARTGLMVGVCMATLTAIFTVSLREQIALLYNDNPEVVTLAAHLMLLAAVYQISDSIQVIGSGILRGYKDTRSIFYITFTAYWVLGLPSGYILALTDLVVEPMGPAGFWIGFIIGLTSAAIMMMLRMRFLQRLPSVIILQRASR
>NZ_CP041435.1|WP_000493947.1|2258544_2259186_+|riboflavin-synthase
MFTGIVQGTAKLVSIDEKPNFRTHVVELPDHMLDGLETGASVAHNGCCLTVTEINGNHVSFDLMKETLRITNLGDLKVGDWVNVERAAKFSDEIGGHLMSGHIMTTAEVAKILTSENNRQIWFKVQDSQLMKYILYKGFIGIDGISLTVGEVTPTRFCVHLIPETLERTTLGKKKLGARVNIEIDPQTQAVVDTVERVLAARENAMNQPGTEA
>NZ_CP041435.1|WP_000098911.1|2259225_2260374_-|cyclopropane-fatty-acyl-phospholipid-synthase
MSSSCIEEVSVPDDNWYRIANELLSRAGIAINGSAPADIRVKNPDFFKRVLQEGSLGLGESYMDGWWECDRLDMFFSKVLRAGLENQLPHHFKDTLRIASARLFNLQSKKRAWIVGKEHYDLGNDLFSRMLDPFMQYSCAYWKDADNLESAQQAKLKMICEKLQLKPGMRVLDIGCGWGGLAHYMASNYDVSVVGVTISAEQQKMAQERCEGLDVTILLQDYRDLNDQFDRIVSVGMFEHVGPKNYDTYFAVVDRNLKPEGIFLLHTIGSKKTDLNVDPWINKYIFPNGCLPSVRQIAQSSEPHFVMEDWHNFGADYDTTLMAWYERFLAAWPEIADNYSERFKRMFTYYLNACAGAFRARDIQLWQVVFSRGVENGLRVAR
>NZ_CP041435.1|WP_001182362.1|2260664_2261876_-|Bcr/CflA-family-multidrug-efflux-MFS-transporter
MQPGKRFLVWLAGLSVLGFLATDMYLPAFAAIQADLQTPASAVSASLSLFLAGFAAAQLLWGPLSDRYGRKPVLLIGLTIFALGSLGMLWVENAATLLVLRFVQAVGVCAAAVIWQALVTDYYPSQKVNRIFATIMPLVGLSPALAPLLGSWLLVHFSWQAIFATLFAITVVLILPIFWLKPTTKARNNSQDGLTFTDLLRSKTYRGNVLIYAACSASFFAWLTGSPFILSEMGYSPAVIGLSYVPQTIAFLIGGYGCRAALQKWQGKQLLPWLLVLFAVSVIATWAAGFISHVSLVEILIPFCVMAIANGAIYPIVVAQALRPFPHATGRAAALQNTLQLGLCFLASLVVSWLISISTPLLTTTSVMLSTVVLVALGYMMQRCEEVDCQNHGNAEVAHSESH
>NZ_CP041435.1|WP_000269501.1|2261988_2262921_+|LysR-family-transcriptional-regulator
MWSEYSLEVVDAVARNGSFSAAAQELHRVPSAVSYTVRQLEEWLAVPLFERRHRDVELTAAGAWFLKEGRSVVKKMQITRQQCQQIANGWRGQLAIAVDNIVRPERTRQMIVDFYRHFDDVELLVFQEVFNGVWDALSDGRVELAIGATRAIPVGGRYAFRDMGMLSWSCVVASHHPLALMDGPFSDDTLRNWPSLVREDTSRTLPKRITWLLDNQKRVVVPDWESSATCISAGLCIGMVPTHFAKPWLNEGKWVALELENPFPDSACCLTWQQNDMSPALTWLLEYLGDSETLNKEWLREPEETPATGD
>NZ_CP041435.1|WP_000190982.1|2262917_2263943_-|HTH-type-transcriptional-repressor-PurR
MATIKDVAKRANVSTTTVSHVINKTRFVAEETRNAVWAAIKELHYSPSAVARSLKVNHTKSIGLLATSSEAAYFAEIIEAVEKNCFQKGYTLILGNAWNNLEKQRAYLSMMAQKRVDGLLVMCSEYPEPLLAMLEEYRHIPMVVMDWGEAKADFTDAVIDNAFEGGYMAGRYLIERGHREIGVIPGPLERNTGAGRLAGFMKAMEEAMIKVPESWIVQGDFEPESGYRAMQQILSQPHRPTAVFCGGDIMAMGALCAADEMGLRVPQDVSLIGYDNVRNARYFTPALTTIHQPKDSLGETAFNMLLDRIVNKREEPQSIEVHPRLIERRSVADGPFRDYRR
>NZ_CP041435.1|WP_000102278.1|2264241_2264331_+|stress-response-protein-YnhF
MSTDLKFSLVTTIIVLGLIVAVGLTAALH
>NZ_CP041435.1|WP_000701040.1|2264496_2265666_+|MFS-transporter
MKINYPLLALAIGAFGIGTTEFSPMGLLPVIARGVDVSIPAAGMLISAYAVGVMVGAPLMTLLLSHRARRSALIFLMAIFTLGNVLSAIAPDYMTLMLSRILTSLNHGAFFGLGSVVAASVVPKHKQASAVATMFMGLTLANIGGVPAATWLGETIGWRMSFLATAGLGVISMVSLFFSLPKGGAGARPEVKKELAVLMRPQVLSALLTTVLGAGAMFTLYTYISPVLQSITHATPVFVTAMLVLIGVGFSIGNYLGGKLADRSVNGTLKGFLLLLMVIMLAIPFLARNEFGAAISMVVWGAATFAVVPPLQMRVMRVASEAPGLSSSVNIGAFNLGNALGAAAGGAVISAGLGYSFVPVMGAIVAGLALLLVFMSARKQPETVCVANS
>NZ_CP041435.1|WP_000007283.1|2265811_2266393_-|superoxide-dismutase-[Fe]
MSFELPALPYAKDALAPHISAETIEYHYGKHHQTYVTNLNNLIKGTAFEGKSLEEIIRSSEGGVFNNAAQVWNHTFYWNCLAPNAGGEPTGKVAEAIAASFGSFADFKAQFTDAAIKNFGSGWTWLVKNSDGKLAIVSTSNAGTPLTTDATPLLTVDVWEHAYYIDYRNARPGYLEHFWALVNWEFVAKNLAA

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Crispr_ID: NZ_CP041435_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP041435_5

2914836-2914927

Orphan

Consensus_repeat	Method
CCACCTTTTTTACCTGCTTCAGATGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP041435_5

>merge|NZ_CP041435|5|2914836-2914927|CRISPRCasFinder
CCACCTTTTTTACCTGCTTCAGATGCGCGCTGCGGGTCATTCTTGAAATTACCCCCGCTGTGCTGTCCACCTTTTTTACCTGCTTCTGATGC

>NZ_CP041435|5|5|2914836-2914927|CRISPRCasFinder
CCACCTTTTTTACCTGCTTCAGATGC	GCGCTGCGGGTCATTCTTGAAATTACCCCCGCTGTGCTGT
CCACCTTTTTTACCTGCTTCTGATGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP041435.1\|WP_000998295.1\|2917765_2918116_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|182074
NZ_CP041435.1\|WP_001349436.1\|2911467_2912268_+\|pyrimidine-utilization-protein-D	unknown	unknown	gnl\|CDD\|211851
NZ_CP041435.1\|WP_000191701.1\|2908352_2908991_-\|HTH-type-transcriptional-regulator-RutR	unknown	unknown	gnl\|CDD\|184970
NZ_CP041435.1\|WP_001143120.1\|2915966_2916194_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|182285
NZ_CP041435.1\|WP_000209869.1\|2920600_2921200_-\|molecular-chaperone-TorD	unknown	unknown	gnl\|CDD\|235326
NZ_CP041435.1\|WP_001299828.1\|2904350_2908313_+\|trifunctional-transcriptional-regulator/proline-dehydrogenase/L-glutamate-gamma-semialdehyde-dehydrogenase	unknown	unknown	gnl\|CDD\|236989
NZ_CP041435.1\|WP_001044280.1\|2916231_2917473_-\|bifunctional-glucose-1-phosphatase/inositol-phosphatase	unknown	unknown	gnl\|CDD\|182284
NZ_CP041435.1\|WP_001307100.1\|2910369_2911062_+\|peroxyureidoacrylate/ureidoacrylate-amidohydrolase-RutB	unknown	unknown	gnl\|CDD\|163356
NZ_CP041435.1\|WP_001151437.1\|2915349_2915946_+\|NAD(P)H:quinone-oxidoreductase	unknown	unknown	gnl\|CDD\|179647
NZ_CP041435.1\|WP_000979516.1\|2904086_2904296_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041435.1\|WP_001352489.1\|2909278_2910370_+\|pyrimidine-utilization-protein-A	unknown	unknown	gnl\|CDD\|163355
NZ_CP041435.1\|WP_001316985.1\|2918131_2918950_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|182074
NZ_CP041435.1\|WP_001062101.1\|2921196_2923743_-\|trimethylamine-N-oxide-reductase-TorA	unknown	unknown	gnl\|CDD\|237909
NZ_CP041435.1\|WP_097419154.1\|2913393_2914722_+\|pyrimidine-utilization-transport-protein-G	unknown	unknown	gnl\|CDD\|132655
NZ_CP041435.1\|WP_001126780.1\|2911073_2911460_+\|pyrimidine-utilization-protein-C	unknown	unknown	gnl\|CDD\|274677
NZ_CP041435.1\|WP_001230242.1\|2923742_2924915_-\|pentaheme-c-type-cytochrome-TorC	unknown	unknown	gnl\|CDD\|184992
NZ_CP041435.1\|WP_000024560.1\|2920202_2920508_+\|chaperone-modulator-CbpM	unknown	unknown	gnl\|CDD\|182346
NZ_CP041435.1\|WP_001028095.1\|2912878_2913373_+\|pyrimidine-utilization-flavin-reductase-protein-F	unknown	unknown	gnl\|CDD\|132654
NZ_CP041435.1\|WP_000420631.1\|2919282_2920203_+\|curved-DNA-binding-protein	unknown	unknown	gnl\|CDD\|182347
NZ_CP041435.1\|WP_001001182.1\|2912277_2912868_+\|malonic-semialdehyde-reductase	unknown	unknown	gnl\|CDD\|180040

Protein	Function_ID	Function_description	E-value
NZ_CP041435.1\|WP_000998295.1\|2917765_2918116_-\|hypothetical-protein	gnl\|CDD\|182074	PRK09784, PRK09784, YccE family protein.	8.2091e-74
NZ_CP041435.1\|WP_001349436.1\|2911467_2912268_+\|pyrimidine-utilization-protein-D	gnl\|CDD\|211851	TIGR03611, RutD, pyrimidine utilization protein D. This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the hydrolase, alpha/beta fold family defined by pfam00067.	1.17717e-140
NZ_CP041435.1\|WP_000191701.1\|2908352_2908991_-\|HTH-type-transcriptional-regulator-RutR	gnl\|CDD\|184970	PRK15008, PRK15008, HTH-type transcriptional regulator RutR; Provisional.	1.3356e-153
NZ_CP041435.1\|WP_001143120.1\|2915966_2916194_+\|hypothetical-protein	gnl\|CDD\|182285	PRK10174, PRK10174, hypothetical protein; Provisional.	8.66725e-44
NZ_CP041435.1\|WP_001299828.1\|2904350_2908313_+\|trifunctional-transcriptional-regulator/proline-dehydrogenase/L-glutamate-gamma-semialdehyde-dehydrogenase	gnl\|CDD\|236989	PRK11809, putA, trifunctional transcriptional regulator/proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase; Reviewed.	0
NZ_CP041435.1\|WP_001044280.1\|2916231_2917473_-\|bifunctional-glucose-1-phosphatase/inositol-phosphatase	gnl\|CDD\|182284	PRK10173, PRK10173, glucose-1-phosphatase/inositol phosphatase; Provisional.	0
NZ_CP041435.1\|WP_001307100.1\|2910369_2911062_+\|peroxyureidoacrylate/ureidoacrylate-amidohydrolase-RutB	gnl\|CDD\|163356	TIGR03614, RutB, pyrimidine utilization protein B.	2.45431e-169
NZ_CP041435.1\|WP_001151437.1\|2915349_2915946_+\|NAD(P)H:quinone-oxidoreductase	gnl\|CDD\|179647	PRK03767, PRK03767, NAD(P)H:quinone oxidoreductase; Provisional.	8.51484e-133
NZ_CP041435.1\|WP_000209869.1\|2920600_2921200_-\|molecular-chaperone-TorD	gnl\|CDD\|235326	PRK04976, torD, chaperone protein TorD; Validated.	5.28244e-84
NZ_CP041435.1\|WP_001352489.1\|2909278_2910370_+\|pyrimidine-utilization-protein-A	gnl\|CDD\|163355	TIGR03612, RutA, pyrimidine utilization protein A. This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the luciferase family defined by pfam00296 and is likely a FMN-dependent monoxygenase. [Unknown function, Enzymes of unknown specificity].	0
NZ_CP041435.1\|WP_001316985.1\|2918131_2918950_-\|hypothetical-protein	gnl\|CDD\|182074	PRK09784, PRK09784, YccE family protein.	0
NZ_CP041435.1\|WP_001062101.1\|2921196_2923743_-\|trimethylamine-N-oxide-reductase-TorA	gnl\|CDD\|237909	PRK15102, PRK15102, trimethylamine-N-oxide reductase TorA.	0
NZ_CP041435.1\|WP_097419154.1\|2913393_2914722_+\|pyrimidine-utilization-transport-protein-G	gnl\|CDD\|132655	TIGR03616, Putative_pyrimidine_permease_RutG, pyrimidine utilization transport protein G. This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the uracil-xanthine permease family defined by TIGR00801. As well as the The Nucleobase:Cation Symporter-2 (NCS2) Family (TC 2.A.40).	0
NZ_CP041435.1\|WP_001126780.1\|2911073_2911460_+\|pyrimidine-utilization-protein-C	gnl\|CDD\|274677	TIGR03610, RutC, pyrimidine utilization protein C. This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the endoribonuclease L-PSP family defined by pfam01042.	5.99808e-85
NZ_CP041435.1\|WP_001230242.1\|2923742_2924915_-\|pentaheme-c-type-cytochrome-TorC	gnl\|CDD\|184992	PRK15032, PRK15032, pentaheme c-type cytochrome TorC.	0
NZ_CP041435.1\|WP_000024560.1\|2920202_2920508_+\|chaperone-modulator-CbpM	gnl\|CDD\|182346	PRK10265, PRK10265, chaperone modulator CbpM.	5.75956e-65
NZ_CP041435.1\|WP_001028095.1\|2912878_2913373_+\|pyrimidine-utilization-flavin-reductase-protein-F	gnl\|CDD\|132654	TIGR03615, flavoprotein_oxidoreductase, pyrimidine utilization flavin reductase protein F. This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the flavin reductase family defined by pfam01613. Presumably, this protein recycles the flavin of the RutA luciferase-like oxidoreductase.	3.76111e-106
NZ_CP041435.1\|WP_000420631.1\|2919282_2920203_+\|curved-DNA-binding-protein	gnl\|CDD\|182347	PRK10266, PRK10266, curved DNA-binding protein.	0
NZ_CP041435.1\|WP_001001182.1\|2912277_2912868_+\|malonic-semialdehyde-reductase	gnl\|CDD\|180040	PRK05365, PRK05365, malonic semialdehyde reductase; Provisional.	9.69092e-129

>NZ_CP041435.1|WP_097419154.1|2913393_2914722_+|pyrimidine-utilization-transport-protein-G
MAMFGFPHWQLKSTSTESGVVAPDERLPFAQTAIMGVQHAVAMFGATVLMPILMGLDPNLSILMSGIGTLLFFFITGGRVPSYLGSSAAFVGVMIAATGFNGQGINPNISIALGGIIACGLVYTVIGLVVMKIGTRWIERLMPPVVTGAVVMAIGLNLAPIAVKSVSASAFDSWMAVMTVLCIGLVAVFTRGMIQRLLILVGLIVACLLYGVMTNVLGLGKAVDFTLVSHAAWFGLPHFSTPAFNSQAMMLIAPVAVILVAENLGHLKAVAGMTGRNMDPYMGRAFVGDGLATMLSGSVGGSGVTTYAENIGVMAVTKVYSTLVFVAAAVIAMLLGFSPKFGALIHTIPAAVIGGASIVVFGLIAVAGARIWVQNRVDLSQNGNLIMVAVTLVLGAGDFALTLGGFTLGGIGTATFGAILLNALLSRKLVDVPPPEVVHQEP
>NZ_CP041435.1|WP_001028095.1|2912878_2913373_+|pyrimidine-utilization-flavin-reductase-protein-F
MNIVDQQTFRDAMSCMGAAVNIITTDGPAGRAGFTASAVCSVTDTPPTLLVCLNRGASVWPVFNENRTLCVNTLSAGQEPLSNLFGGKTPMEHRFAAARWQTGVTGCPQLEEALVSFDCRISQVVSVGTHDILFCAIEAIHRHATPYGLVWFDRSYHALMRPAC
>NZ_CP041435.1|WP_001001182.1|2912277_2912868_+|malonic-semialdehyde-reductase
MNEAVSPGALSTLFTDARTHNGWRETPVSDETLRELYALMKWGPTSANCSPARIVFIRTAEGKERLRPALSIGNLQKTLTAPVTAIVAWDSEFYERLPQLFPHGDARSWFTSSPQLAEETAFRNSSMQAAYLIVACRALGLDTGPMSGFDRQHVDDAFFAGSTLKSNLLINIGYGDRSKLFARLPRLSFEEACGLL
>NZ_CP041435.1|WP_001349436.1|2911467_2912268_+|pyrimidine-utilization-protein-D
MKLSLSPPPYADAPVVVLISGLGGSGSYWLPQLAVLEQEYQVVCYDQRGTGNNPDTLAEDYSIAQMAAELHQALVAAGIEHYAVVGHALGALVGMQLALDYPASVTVLISVNGWLRINAHTRRCFQVRERLLYSGGAQAWVEAQPLFLYPADWMAARVPRLEAEDALALAHFQGKNNLLRRLNALKRADFSHHADRIRCPVQIICASDDLLVPTACSSELHAALPDSQKMVMRYGGHACNVTDPETFNALLLNGLASLLHHREAAL
>NZ_CP041435.1|WP_001126780.1|2911073_2911460_+|pyrimidine-utilization-protein-C
MPKSVIIPAGSSAPLAPFVPGTLADGVVYVSGTLAFDQHNNVLFADDPKAQTRHVLETIRKVIETAGGTMADVTFNSIFITDWKNYAAINEIYAEFFPGDKPARFCIQCGLVKPDALVEIATIAHIAK
>NZ_CP041435.1|WP_001307100.1|2910369_2911062_+|peroxyureidoacrylate/ureidoacrylate-amidohydrolase-RutB
MTTLTARPEAITFDPQQSALIVVDMQNAYATPGGYLDLAGFDVSTTRPVIANIQTAVTAARAAGMLIIWFQNGWDEQYVEAGGPGSPNFHKSNALKTMRKQPQLQGKLLAKGSWDYQLVDELVPQPGDIVLPKPRYSGFFNTPLDSILRSRGIRHLVFTGIATNVCVESTLRDGFFLEYFGVVLEDATHQAGPEFAQKAALFNIETFFGWVSDVETFCDALSPTSFAHIA
>NZ_CP041435.1|WP_001352489.1|2909278_2910370_+|pyrimidine-utilization-protein-A
MKIGVFVPIGNNGWLISTHAPQYMPTFELNKAIVQKAEHYHFDFALSMIKLRGFGGKTEFWDHNLESFTLMAGLAAVTSRIQIYATAATLTLPPAIVARMAATIDSISGGRFGVNLVTGWQKPEYEQMGIWPGDDYFSRRYDYLTEYVQVLRDLWGTGKSDFKGDFFTMNDCRVSPQPSVPMKVICAGQSDAGMAFSAQYADFNFCFGKGVNTPTAFAPTAVRMKQAAEQTGRDVGSYVLFMVIADETDDAARAKWEHYKAGADEEALSWLTEQSQKDTRSGTDTNVRQMADPTSAVNINMGTLVGSYASVARMLDEVASVPGAEGVLLTFDDFLSGIETFGERIQPLMQCRAHLPALTQEVA
>NZ_CP041435.1|WP_000191701.1|2908352_2908991_-|HTH-type-transcriptional-regulator-RutR
MTQGAVKTTGKRSRAVSAKKKAILSAALDTFSQFGFHGTRLEQIAELAGVSKTNLLYYFPSKEALYIAVLRQILDIWLAPLKAFREDFAPLAAIKEYIRLKLEVSRDYPQASRLFCMEMLAGAPLLMDELTGDLKALIDEKSALIAGWVKSGKLAPIDPQHLIFMIWASTQHYADFAPQVEAVTGATLRDEVFFNQTVENVQRIIIEGIRPR
>NZ_CP041435.1|WP_001299828.1|2904350_2908313_+|trifunctional-transcriptional-regulator/proline-dehydrogenase/L-glutamate-gamma-semialdehyde-dehydrogenase
MGTTTMGVKLDDATRERIKSAATRIDRTPHWLIKQAIFSYLEQLENSDTLPELPALLSGAANESDEAPTPAEEPHQPFLDFAEQILPQSVSRAAITAAYRRPETEAVSMLLEQARLPQPVAEQAHKLAYQLADKLRNQKNASGRAGMVQGLLQEFSLSSQEGVALMCLAEALLRIPDKATRDALIRDKISNGNWQSHIGRSPSLFVNAATWGLLFTGKLVSTHNEASLSRSLNRIIGKSGEPLIRKGVDMAMRLMGEQFVTGETIAEALANARKLEEKGFRYSYDMLGEAALTAADAQAYMVSYQQAIHAIGKASNGRGIYEGPGISIKLSALHPRYSRAQYDRVMEELYPRLKSLTLLARQYDIGINIDAEEADRLEISLDLLEKLCFEPELAGWNGIGFVIQAYQKRCPLVIDYLIDLATRSRRRLMIRLVKGAYWDSEIKRAQMDGLEGYPVYTRKVYTDVSYLACAKKLLAVPNLIYPQFATHNAHTLAAIYQLAGQNYYPGQYEFQCLHGMGEPLYEQVTGKVADGKLNRPCRIYAPVGTHETLLAYLVRRLLENGANTSFVNRIADTSLPLDELVADPVTAVEKLAQQEGQTGLPHPKIPLPRDLYGHGRDNSAGLDLANEHRLASLSSALLNSALQKWQALPMLEQPVAAGEMSPVINPAEPKDIVGFVREATPREVEQALESAVNNAPIWFATPPVERAAILHRAAVLMESQMQQLIGILVREAGKTFSNAIAEVREAVDFLHYYAGQVRDDFANETHRPLGPVVCISPWNFPLAIFTGQIAAALAAGNSVLAKPAEQTPLIAAQGIAILLEAGVPPGVVQLLPGQGETVGAQLTGDDRVRGVMFTGSTEVATLLQRNIASRLDAQGRPIPLIAETGGMNAMIVDSSALTEQVVVDVLASAFDSAGQRCSALRVLCLQDEIADHTLKMLRGAMAECRMGNPGRLTTDIGPVIDSEAKANIERHIQTMRSKGRPVFQAVRENSEDAREWQSGTFVAPTLIELDDFAELQKEVFGPVLHVVRYNRNQLPELIEQINASGYGLTLGVHTRIDETIAQVTGSAHVGNLYVNRNMVGAVVGVQPFGGEGLSGTGPKAGGPLYLYRLLANRPESALAVTLARQDAEYPVDAQLKAALTQPLNALREWAANRPELQALCTQYGELAQAGTQRLLPGPTGERNTWTLLPRERVLCIADDEQDALTQLAAVLAVGSQVLWPDDALHRQLVKALPSAVSERIQLAKAENITAQPFDAVIFHGDSDQLRALCEAVAARDGAIVSVQGFARGESNILLERLYIERSLSVNTAAAGGNASLMTIG
>NZ_CP041435.1|WP_000979516.1|2904086_2904296_-|hypothetical-protein
MMLQLCATMLNVTCVASLKMNEMLIKEIDMTGIKKITQTFSLRQLTFLKGATAKNVRECNLMKNSVAEH
>NZ_CP041435.1|WP_001151437.1|2915349_2915946_+|NAD(P)H:quinone-oxidoreductase
MAKVLVLYYSMYGHIETMARAVAEGASKVDGAEVVVKRVPETMPPQLFEKAGGKTQTAPVATPQELADYDAIIFGTPTRFGNMSGQMRTFLDQTGGLWASGALYGKLASVFSSTGTGGGQEQTITSTWTTLAHHGMVIVPIGYAAQELFDVSQVRGGTPYGATTIAGGDGSRQPSQEELSIARYQGEYVAGLAVKLNG
>NZ_CP041435.1|WP_001143120.1|2915966_2916194_+|hypothetical-protein
MPTQEAKAHHVGEWASLRNTSPEIAEAIFEVAGYDEKMAEKIWEEGSDEVLVKAFAKTDKDSLFWGEQTIERKNV
>NZ_CP041435.1|WP_001044280.1|2916231_2917473_-|bifunctional-glucose-1-phosphatase/inositol-phosphatase
MNKTLIAAAVAGIVLLASNAQAQTVPEGYQLQQVLMMSRHNLRAPLANNGSVLEQSTPNKWPEWDVPGGQLTTKGGVLEVYMGHYMREWLAEQGMVKSGECPPPYTVYAYANSLQRTVATAQFFITGAFPGCDIPVHHQEKMGTMDPTFNPVITDDSAAFSEQAVAAMEKELSKLQLTDSYQLLEKIVNYKDSPACKEKQQCSLVDGKNTFSAKYQQEPGVSGPLKVGNSLVDAFTLQYYEGFPMDQVAWGEIKSDQQWKVLSKLKNGYQDSLFTSPEVARNVAKPLVSYIDKALVTDRTSAPKITVLVGHDSNIASLLTALDFKPYQLHDQNERTPIGGKIVFQRWHDSKANRDLMKIEYVYQSAEQLRNADALTLQAPAQRVTLELSGCPIDANGFCPMDKFDSVLNEAVK
>NZ_CP041435.1|WP_000998295.1|2917765_2918116_-|hypothetical-protein
MNDKKCILHLPEFIFNDNKARLVLDTDPEKRINEVKNFLTALSDSICSLFIVNSNVASISLGNESFSTDEDLEYGYLINTGNHYDVYLPPELFAQAYKLKNKEMNAQLDYLNRYAI
>NZ_CP041435.1|WP_001316985.1|2918131_2918950_-|hypothetical-protein
MSTKKNQKYSITLFENTLVCFMRLYKEIRRQKAEDYIPCLECDSLEKEFEEMQNDNDLSLFLRTLRTNDTETYSGVSEGITYTIQYVRDIDIVRVSLPGRGSESITDFKGYYWYGFMEYIENINACDDVFSEYCLDDENMSIQPEWINTPGISDLDTGIDLSGISFIQSEINKTYGLKYAPVDGDGYCLLRAILVLKEHEYSWALGSHKTQKQVYEEFIKIVDKQTIEALVDTAFYNLREDVKTLFGVDLQSDNKIQGEGSLMSWNFLFFKK
>NZ_CP041435.1|WP_000420631.1|2919282_2920203_+|curved-DNA-binding-protein
MELKDYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEPDAEARFKEVAEAWEVLSDEQRRAEYDQMWQHRNDPQFNRQFHHSDGQSFNAEDFDDIFSSIFGQHARQSRQRPATRGHDIEIEVAVFLEETLTEHKRTISYNLPVYNAFGMIEQEIPKTLNVKIPAGVGNGQRIRLKGQGTPGENGGPNGDLWLVIHIAPHPLFDIVGQDLEIVVPVSPWEAALGAKVTVPTLKESILLTIPPGSQAGQRLRVKGKGLVSKKQTGDLYAVLKIVMPPKPDENTAALWQQLADAQSSFDPRKDWGKA
>NZ_CP041435.1|WP_000024560.1|2920202_2920508_+|chaperone-modulator-CbpM
MANVTVTFTITEFCLHTGISEEELNEIVGLGVVEPREIQETTWVFDDHAAIVVQRAVRLRHELALDWPGIAVALTLMDDIAHLKQENRLLRQRLSRFVAHP
>NZ_CP041435.1|WP_000209869.1|2920600_2921200_-|molecular-chaperone-TorD
MTTLTAQQIACVYAWLAQLFSRELDDEQLTQIASAQMAEWFSLLKSEPPLAAAVNELENCIATLTVRDDARLELAADFCGLFLMTDKQAALPYASAYKQDEQEIKRLLVEAGMETSGNFNEPADHLAIYLELLSHLHFSLGEGTVPARRIDSLRQKTLTALWQWLPEFVVRCRQYDSFGFYAALSQLLLVLVESDHQNR
>NZ_CP041435.1|WP_001062101.1|2921196_2923743_-|trimethylamine-N-oxide-reductase-TorA
MNNNDLFQASRRRFLAQLGGLTVAGMLGPSLLTPRRATAAQAATDAVISKEGILTGSHWGAIRATVKDGRFVAAKPFELDKYPSKMIAGLPDHVHNAARIRYPMVRVDWLRKRHLSDTSQRGDNRFVRVSWDEALDMFYEELERVQKTHGPSALLTASGWQSTGMFHNASGMLAKAIALHGNSVGTGGDYSTGAAQVILPRVVGSMEVYEQQTSWPLVLQNSKTIVLWGSDLLKNQQANWWCPDHDVYEYYAQLKAKVAAGEIEVISIDPVVTSTHEYLGREHVKHIAVNPQTDVPLQLALAYTLYSENLYDKNFLANYCVGFEQFLPYLLGEKDGQPKDAAWAEKLTGIDAETIRGLARQMAANRTQIIAGWCVQRMQHGEQWAWMIVVLAAMLGQIGLPGGGFGFGWHYNGAGTPGRKGVILSGFSGSTSIPPVHDNSDYKGYSSTIPIARFIDAILEPGKVINWNGKSVKLPPLKMCIFAGTNPFHRHQQINRIIEGWRKLETVIAIDNQWTSTCRFADIVLPATTQFERNDLDQYGNHSNRGIIAMKQVVPPQFEARNDFDIFRELCRRFNREEAFTEGLDEMGWLKRIWQEGVQQGKGRGVHLPAFDDFWNNKEYVEFDHPQMFVRHQAFREDPDLEPLGTPSGLIEIYSKTIADMNYDDCQGHPMWFEKIERSHGGPGSQKYPLHLQSVHPDFRLHSQLCESETLRQQYTVAGKEPVFINPQDASARGIRNGDVVRVFNARGQVLAGAVVSDRYAPGVARIHEGAWYDPDKGGEPGALCKYGNPNVLTIDIGTSQLAQATSAHTTLVEIEKYNGAVEQVTAFNGPVEMVAQCEYVPASQVKS
>NZ_CP041435.1|WP_001230242.1|2923742_2924915_-|pentaheme-c-type-cytochrome-TorC
MRKLWNALRRPSARWSVLALVAIGIVIGIALIVLPHVGIKVTSTTEFCVSCHSMQPVYEEYKQSVHFQNASGVRAECHDCHIPPDIPGMVKRKLEASNDIYQTFIAHSIDTPEKFEAKRAELAEREWARMKENNSATCRSCHNYDAMDHAKQHPEAARQMKVAAKDNQSCIDCHKGIAHQLPDMSSGFRKQFDELRASANDSGDTLYSIDIKPIYAAKGDKEASGSLLPASEVKVLKRDGDWLQIEITGWTESAGRQRVLTQFPGKRIFVASIRGDVQQQVKTLEKTTVADTNTEWSKLQATAWMKKGDMVNDIKPIWAYADSLYNGTCNQCHGAPEIAHFDANGWIGTLNGMIGFTSLDKREERTLLKYLQMNASDTAGKAHGDKKEEK

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Crispr_ID: NZ_CP041435_6

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP041435_6

3518787-3518900

Orphan

Consensus_repeat	Method
TTTTTTTACCTGATTCGGGTAAA	PILER-CR

2 spacers

The CRISPR arrays of NZ_CP041435_6

>merge|NZ_CP041435|6|3518787-3518900|PILER-CR
TTTACCTGATTCGGGTAAACGCCTTTACCTGATTTGGGTAAACTTTTTTTACCTGATTCAGGTAAATTTACCTCTTTCAGGTAAACTTTATTTTTCTTACCTGATTCGGGTAAT

>NZ_CP041435|6|3|3518787-3518900|PILER-CR
TTTACCTGATTCGGGTAAACGCC	TTTACCTGATTTGGGTAAACTTTT
TTTACCTGATTCAGGTAAATTTA	CCTCTTTCAGGTAAACTTTATTTTT
CTTACCTGATTCGGGTAAT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP041435.1\|WP_000788815.1\|3517622_3518324_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|369163
NZ_CP041435.1\|WP_000233576.1\|3521564_3521771_+\|phage-encoded-cell-division-inhibitor-protein	unknown	unknown	gnl\|CDD\|236900
NZ_CP041435.1\|WP_000145915.1\|3517323_3517626_-\|protein-ren	unknown	unknown	unknown
NZ_CP041435.1\|WP_000259990.1\|3520213_3520969_+\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225484
NZ_CP041435.1\|WP_001182903.1\|3519336_3519876_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|368819
NZ_CP041435.1\|WP_000224914.1\|3512479_3512650_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|182029
NZ_CP041435.1\|WP_001356996.1\|3515142_3516669_-\|recombinase-family-protein	unknown	unknown	gnl\|CDD\|238206
NZ_CP041435.1\|WP_000881075.1\|3513319_3514117_-\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|197666
NZ_CP041435.1\|WP_000682294.1\|3523607_3523769_+\|DUF1317-family-protein	unknown	unknown	gnl\|CDD\|284449
NZ_CP041435.1\|WP_001445652.1\|3514126_3514678_-\|Raf-kinase-inhibitor-like-protein-YbcL	unknown	unknown	gnl\|CDD\|182092
NZ_CP041435.1\|WP_001303586.1\|3513101_3513203_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041435.1\|WP_000186833.1\|3522930_3523611_+\|YqaJ-viral-recombinase-family-protein	unknown	unknown	gnl\|CDD\|378216
NZ_CP041435.1\|WP_077248689.1\|3524329_3524611_+\|cell-division-protein-ZapA	unknown	unknown	unknown
NZ_CP041435.1\|WP_001356999.1\|3523761_3524319_+\|phage-N-6-adenine-methyltransferase	unknown	unknown	gnl\|CDD\|368643
NZ_CP041435.1\|WP_000995433.1\|3521846_3522143_+\|host-nuclease-inhibitor-protein-Gam	unknown	unknown	gnl\|CDD\|368728
NZ_CP041435.1\|WP_001067458.1\|3519944_3520175_-\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|374243
NZ_CP041435.1\|WP_001299444.1\|3516726_3516876_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041435.1\|WP_001356995.1\|3512649_3513105_-\|DNA-base-flipping-protein-YbcN	unknown	unknown	gnl\|CDD\|182057
NZ_CP041435.1\|WP_000100847.1\|3522148_3522934_+\|phage-recombination-protein-Bet	unknown	unknown	gnl\|CDD\|273871
NZ_CP041435.1\|WP_001070442.1\|3516923_3517256_-\|SMR-family-multidrug-efflux-protein-EmrE	unknown	unknown	gnl\|CDD\|137367

Protein	Function_ID	Function_description	E-value
NZ_CP041435.1\|WP_000788815.1\|3517622_3518324_-\|hypothetical-protein	gnl\|CDD\|369163	pfam06992, Phage_lambda_P, Replication protein P. This family consists of several Bacteriophage lambda replication protein P like proteins. The bacteriophage lambda P protein promoters replication of the phage chromosome by recruiting a key component of the cellular replication machinery to the viral origin. Specifically, P protein delivers one or more molecules of Escherichia coli DnaB helicase to a nucleoprotein structure formed by the lambda O initiator at the lambda replication origin.	3.01215e-81
NZ_CP041435.1\|WP_000233576.1\|3521564_3521771_+\|phage-encoded-cell-division-inhibitor-protein	gnl\|CDD\|236900	PRK11354, kil, FtsZ inhibitor protein; Reviewed.	6.0586e-14
NZ_CP041435.1\|WP_000259990.1\|3520213_3520969_+\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|225484	COG2932, COG2932, Predicted transcriptional regulator [Transcription].	1.29853e-28
NZ_CP041435.1\|WP_001182903.1\|3519336_3519876_-\|hypothetical-protein	gnl\|CDD\|368819	pfam06254, YdaT_toxin, Putative bacterial toxin ydaT. YdaT_toxin is a family of putative bacterial toxins that are neutralized by the putative antitoxin YdaS, UniProtKB:P76063, family pfam144549.	8.69182e-38
NZ_CP041435.1\|WP_000224914.1\|3512479_3512650_-\|hypothetical-protein	gnl\|CDD\|182029	PRK09689, PRK09689, prophage protein NinE; Provisional.	1.03602e-26
NZ_CP041435.1\|WP_001356996.1\|3515142_3516669_-\|recombinase-family-protein	gnl\|CDD\|238206	cd00338, Ser_Recombinase, Serine Recombinase family, catalytic domain; a DNA binding domain may be present either N- or C-terminal to the catalytic domain. These enzymes perform site-specific recombination of DNA molecules by a concerted, four-strand cleavage and rejoining mechanism which involves a transient phosphoserine linkage between DNA and serine recombinase. Serine recombinases demonstrate functional versatility and include resolvases, invertases, integrases, and transposases. Resolvases and invertases (i.e. Tn3, gamma-delta, Tn5044 resolvases, Gin and Hin invertases) in this family contain a C-terminal DNA binding domain and comprise a major phylogenic group. Also included are phage- and bacterial-encoded recombinases such as phiC31 integrase, SpoIVCA excisionase, and Tn4451 TnpX transposase. These integrases and transposases have larger C-terminal domains compared to resolvases/invertases and are referred to as large serine recombinases. Also belonging to this family are proteins with N-terminal DNA binding domains similar to IS607- and IS1535-transposases from Helicobacter and Mycobacterium.	1.50086e-25
NZ_CP041435.1\|WP_000881075.1\|3513319_3514117_-\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|197666	smart00342, HTH_ARAC, helix_turn_helix, arabinose operon control protein.	1.23155e-22
NZ_CP041435.1\|WP_000682294.1\|3523607_3523769_+\|DUF1317-family-protein	gnl\|CDD\|284449	pfam07026, DUF1317, Protein of unknown function (DUF1317). This family consists of several hypothetical bacterial and phage proteins of around 60 residues in length. The function of this family is unknown.	2.41422e-28
NZ_CP041435.1\|WP_001445652.1\|3514126_3514678_-\|Raf-kinase-inhibitor-like-protein-YbcL	gnl\|CDD\|182092	PRK09818, PRK09818, kinase inhibitor.	3.15621e-120
NZ_CP041435.1\|WP_000186833.1\|3522930_3523611_+\|YqaJ-viral-recombinase-family-protein	gnl\|CDD\|378216	pfam09588, YqaJ, YqaJ-like viral recombinase domain. This protein family is found in many different bacterial species but is of viral origin. The protein forms an oligomer and functions as a processive alkaline exonuclease that digests linear double-stranded DNA in a Mg(2+)-dependent reaction, It has a preference for 5'-phosphorylated DNA ends. It thus forms part of the two-component SynExo viral recombinase functional unit.	2.29334e-29
NZ_CP041435.1\|WP_001356999.1\|3523761_3524319_+\|phage-N-6-adenine-methyltransferase	gnl\|CDD\|368643	pfam05869, Dam, DNA N-6-adenine-methyltransferase (Dam). This family consists of several bacterial and phage DNA N-6-adenine-methyltransferase (Dam) like sequences.	2.15417e-67
NZ_CP041435.1\|WP_000995433.1\|3521846_3522143_+\|host-nuclease-inhibitor-protein-Gam	gnl\|CDD\|368728	pfam06064, Gam, Host-nuclease inhibitor protein Gam. The Gam protein inhibits RecBCD nuclease and is found in both bacteria and bacteriophage.	6.64909e-52
NZ_CP041435.1\|WP_001067458.1\|3519944_3520175_-\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|374243	pfam15943, YdaS_antitoxin, Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT. YdaS_antitoxin is a family of putative bacterial antitoxins, neutralising the toxin YdaT, family pfam06254.	9.89251e-22
NZ_CP041435.1\|WP_001356995.1\|3512649_3513105_-\|DNA-base-flipping-protein-YbcN	gnl\|CDD\|182057	PRK09741, PRK09741, hypothetical protein; Provisional.	1.14187e-95
NZ_CP041435.1\|WP_000100847.1\|3522148_3522934_+\|phage-recombination-protein-Bet	gnl\|CDD\|273871	TIGR01913, Uncharacterized_protein_UU154, phage recombination protein Bet. This model represents the phage recombination protein Bet from a number of phage, including phage lambda. All members of this family are found in phage genomes or in putative prophage regions of bacterial genomes. [Mobile and extrachromosomal element functions, Prophage functions].	1.45393e-64
NZ_CP041435.1\|WP_001070442.1\|3516923_3517256_-\|SMR-family-multidrug-efflux-protein-EmrE	gnl\|CDD\|137367	PRK09541, emrE, EmrE family multidrug efflux SMR transporter.	2.58749e-62

>NZ_CP041435.1|WP_000788815.1|3517622_3518324_-|hypothetical-protein
MKNIAAQMVNFDCEQMRRIANNMPEQYDEKPQVQQVAQIINGVLSQLLATFPASLANRDQNELNEIRRQWVLAFRENGITTMEQVNAGMRVARRQNRPFLPSPGQFVAWCREEASVNAGLPNVSELVDMVYEYCRKRGLYPDAESYPWKSNAHYWLVTNLYQNMRANALTDAELRRKAADELTCMTARINRGETIPEPVKQLPVMGGRPLNRAQALAKIAEIKAKFGLKGASV
>NZ_CP041435.1|WP_000145915.1|3517323_3517626_-|protein-ren
MTGKEAIIHYLGTHKSFCAQDVAAVTGATVTSINQAAAKMARAGILVVDGKVWRTVYYRFATREEREGKVSTNLIFKECRQSAAMKRVLRVYKRTSMGTQ
>NZ_CP041435.1|WP_001070442.1|3516923_3517256_-|SMR-family-multidrug-efflux-protein-EmrE
MNPYIYLGGAILAEVIGTTLMKFSEGFTRLWPSVGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLVINLLSRSTPH
>NZ_CP041435.1|WP_001299444.1|3516726_3516876_-|hypothetical-protein
MSLVLCFLLMSLFFMYSFVLSRLWRKKIAIRLLLYIQDNVTLIVFLNKN
>NZ_CP041435.1|WP_001356996.1|3515142_3516669_-|recombinase-family-protein
MKKAIAYMRFSSPGQMSGDSLNRQRRLIAEWLKVNSDYYLDTITYEDLGLSAFKGKHAQSGAFSEFLDAIEHGYILPGTTLLVESLDRLSREKVGEAIERLKLILNHGIDVITLCDNTVYNIDSLNEPYSLIKAILIAQRANEESEIKSSRVKLSWKKKRQDAMESGTIMTASCPRWLSLDDKRTAFVPDPDRVKTIELIFKLRMERRSLNAIAKYLNDHAVKNFSGKESAWGPSVIEKLLANKALIGICVPSYRARGKGISEIAGYYPRIISDDLFYAVQEIRLAPFGISNSSKNPMLINLLRTVMKCEACGNTMIVHAVSGSLHGYYVCPMRRLHRCDRPSIKRDLVDYNIINELLFNCSKIQPVENKKDANETLELKIIELQMKINNLIVALSVAPEVTAIAEKIRLLDKELRRASVSLKTLKSKGVNSFSDFYAIDLTSKNGRELCRTLAYKTFEKIIINTDNKTCDIYFMNGIVFKHYPLMKVISAQQAISALKYMVDGEIYF
>NZ_CP041435.1|WP_001445652.1|3514126_3514678_-|Raf-kinase-inhibitor-like-protein-YbcL
MKTLIVSTVLAFITFSAQAAAFQVTSNEIKTGEQLTTSHVFSGFGCEGGNTSPSLTWSGVPEGTKSFAVTVYDPDAPTGSGWWHWTVVNIPATITYLPVDAGRRDGTKLPTGAVQGRNDFGYAGFGGACPPKGDKPHHYQFKVWALKTEKIPVDSNSSGALVGYMLNANKIATAEITPVYEIK
>NZ_CP041435.1|WP_000881075.1|3513319_3514117_-|helix-turn-helix-transcriptional-regulator
MLARGKTNLKIEEIRMHKHHEIHRVKPLMPALCRIRQGKKVINWETHTLTVDNNQIILFPCGYEFYIENYPEAGLYLAEMLYLPIDLIESFQKLYTVTDQIRNKTSFFLPQNPELIYCWEQLKTSVSRGFSTKIQEHLAMGVLLSLGVNHVNHLLLSYSKQSLISRCYNLLLSEPGTKWTANKVARYLYISVSTLHRRLASEGVSFQSILDDVRLNNALSAIQTTVKPISEIARENGYKCPSRFTERFHNRFNITPREIRKASRE
>NZ_CP041435.1|WP_001303586.1|3513101_3513203_-|hypothetical-protein
MRTYNPNSLLPSQMQKCTCNSLHLAFDLCGGEA
>NZ_CP041435.1|WP_001356995.1|3512649_3513105_-|DNA-base-flipping-protein-YbcN
MNLPQDGIKLHRGNFTAIGQQIQPYLEDGKCFRMVLKPWRERRSLSQNALSHMWYSEISEYLISKGKTFATPAWVKDALKHTYLGYETKDLVDVVTGDITTIQSLRHTSDLDTGEMYVFLCKVEAWAMNIGCHLTIPQSCEFQQLRDKQEA
>NZ_CP041435.1|WP_000224914.1|3512479_3512650_-|hypothetical-protein
MATPLIRVMNGHIYRVPNRRKRKPELKPSEIPTLLGYTASLVDKKWLRLAARRNHG
>NZ_CP041435.1|WP_001182903.1|3519336_3519876_-|hypothetical-protein
MQPLTYQQTSGFSPTAVINRSQTKQVPGHEKIRDAVRAWSAVDNQDVVATLIVNEYREQGGGTIDFPDDVSRARQKLFRFLDNKFDSEKYRNNVRELTPAILAVLPLEYRGYLVEQDSFMARLAEMEKELSEAKQAVILNAPRHQKLKEISEGIVSMFRVDPDLAGPLMAMVTTMLGAI
>NZ_CP041435.1|WP_001067458.1|3519944_3520175_-|helix-turn-helix-domain-containing-protein
MNPAIKTAINIVGSQKKLGAACEVSQQAVYKWLHNKAKVSPEHVGSIVTATGGVVKAYQIRPDLPKLFPHTEKNAA
>NZ_CP041435.1|WP_000259990.1|3520213_3520969_+|helix-turn-helix-transcriptional-regulator
MVVFSQQPFSFDGIKPWLYIWTMKTTLSERLKEARLARGLTQKALGDLVGVSQAAIQKIETGKANQTTKIVEIANALGVRAEWLSSGVGNMSDSTVQPIQSTVSHSKYFKIDVLDIEVSAGPGVINREFVEVLRSVEYSFDDARHMFDGRKAENIRIINVRGDSMSGTIEPGDLLFVDITVKSFDGDGIYAFLYDDTAHVKRLQMMKDKLLVISDNKSYSPWDPIEKDEMNRVFIFGKVIGSMPQTYRKHG
>NZ_CP041435.1|WP_000233576.1|3521564_3521771_+|phage-encoded-cell-division-inhibitor-protein
MVHQHYGTQTVNRGAVMPGMLVKHKDGTWTASANLRGRLYLHRGIERTYTRDLLVEVFLDGRGNGLNH
>NZ_CP041435.1|WP_000995433.1|3521846_3522143_+|host-nuclease-inhibitor-protein-Gam
MNAYYIQDRLEAQSWARHYQQIAREEKEAELADDMEKGLPQHLFESLCIDHLQRHGASKKAITRAFDDDVEFQERMAEHIQYMVETIAHHQVDIDSEV
>NZ_CP041435.1|WP_000100847.1|3522148_3522934_+|phage-recombination-protein-Bet
MSTALATLAGKLAERVGMDSVDPQELITTLRQTAFKGDASDAQFIALLIVANQYGLNPWTKEIYAFPDKQNGIVPVVGVDGWSRIINENQQFDGMDFEQDNESCTCRIYRKDRNHPICVTEWMDECRREPFKTREGREITGPWQSHPKRMLRHKAMIQCARLAFGFAGIYDKDEAERIVENTAYTAERQPERDITPVNDETMQEINTLLIALDKTWDDDLLPLCSQIFRRDIRASSELTQAEAVKALGFLKQKATEQKVAA
>NZ_CP041435.1|WP_000186833.1|3522930_3523611_+|YqaJ-viral-recombinase-family-protein
MTPDIILQRTGIDVRAVEQGDDAWHKLRLGVITASEVHNVIAKPRSGKKWPDMKMSYFHTLLAEVCTGVAPEVNAKALAWGKQYENDARTLFEFTSGVNVTESPIIYRDESMRTACSPDGLCSDGNGLELKCPFTSRDFMKFRLGGFEAIKSAYMAQVQYSMWVTRKDAWYFANYDPRMKREGLHYVVIERNEKYMANFDEMVPEFIEKMDVALAEIGFVFGEQWR
>NZ_CP041435.1|WP_000682294.1|3523607_3523769_+|DUF1317-family-protein
MKHPHDNIRVGAITFIYSVTKRGWVFPGLSVIRNPLKAQRLAEAINNKRGLYD
>NZ_CP041435.1|WP_001356999.1|3523761_3524319_+|phage-N-6-adenine-methyltransferase
MTDFTGSNTPAEHRDSWRTPPEIFAALNAEFVFQLDAAASEKNQLCRLFISQEQNTLTTSWPEAMGYASGYVWLNPPYSNISPFVKKAATENKFSSVGCVMLLPADTSVGWFHEAIQTASEVRFITAGRLAFINPLTEKPVSGNNKGSMLIIWHPYPRTHCHFTTVDRGELMAFGSRILARREAA
>NZ_CP041435.1|WP_077248689.1|3524329_3524611_+|cell-division-protein-ZapA
MHFSGSGLHILCAYACRYGTCSMTPQQENALRSIARQANSEIKKARQQFPDKNVDDICRSVLKKHRETVTLMGFTPTHLSLAIGMLNGVFKER

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP041435_5	5.1\|2914862\|40\|NZ_CP041435\|CRISPRCasFinder	2914862-2914901	40	NZ_CP041417	Escherichia coli strain STEC711 plasmid pSTEC711_1, complete sequence	47951-47990	0	1.0
NZ_CP041435_6	6.1\|3518810\|24\|NZ_CP041435\|PILER-CR	3518810-3518833	24	NC_049946	Escherichia virus Lambda_4A7 genome assembly, chromosome: 1	37652-37675	0	1.0
NZ_CP041435_6	6.1\|3518810\|24\|NZ_CP041435\|PILER-CR	3518810-3518833	24	LR595861	Escherichia virus Lambda_4C10 genome assembly, chromosome: 1	37935-37958	0	1.0
NZ_CP041435_6	6.2\|3518857\|25\|NZ_CP041435\|PILER-CR	3518857-3518881	25	NC_049946	Escherichia virus Lambda_4A7 genome assembly, chromosome: 1	37604-37628	0	1.0
NZ_CP041435_6	6.2\|3518857\|25\|NZ_CP041435\|PILER-CR	3518857-3518881	25	LR595861	Escherichia virus Lambda_4C10 genome assembly, chromosome: 1	37887-37911	0	1.0
NZ_CP041435_6	6.1\|3518810\|24\|NZ_CP041435\|PILER-CR	3518810-3518833	24	NZ_AP023208	Escherichia coli strain TUM18781 plasmid pMTY18781-3, complete sequence	44572-44595	1	0.958
NZ_CP041435_6	6.2\|3518857\|25\|NZ_CP041435\|PILER-CR	3518857-3518881	25	NZ_AP023208	Escherichia coli strain TUM18781 plasmid pMTY18781-3, complete sequence	44524-44548	1	0.96
NZ_CP041435_4	4.1\|2255265\|38\|NZ_CP041435\|CRISPRCasFinder	2255265-2255302	38	NZ_CP043437	Enterobacter sp. LU1 plasmid unnamed	113727-113764	2	0.947
NZ_CP041435_6	6.2\|3518857\|25\|NZ_CP041435\|PILER-CR	3518857-3518881	25	NZ_CP015341	Lactobacillus brevis strain 100D8 plasmid unnamed3, complete sequence	35661-35685	4	0.84
NZ_CP041435_3	3.2\|1098814\|32\|NZ_CP041435\|PILER-CR,CRISPRCasFinder,CRT	1098814-1098845	32	NZ_CP019314	Tateyamaria omphalii strain DOK1-4 plasmid pDOK1-4-2, complete sequence	71972-72003	6	0.812
NZ_CP041435_2	2.24\|1082537\|32\|NZ_CP041435\|CRISPRCasFinder,CRT	1082537-1082568	32	NC_021289	Burkholderia insecticola plasmid p1, complete sequence	555773-555804	7	0.781
NZ_CP041435_2	2.31\|1082964\|32\|NZ_CP041435\|CRISPRCasFinder,CRT	1082964-1082995	32	NZ_CP026333	Pseudomonas sp. XWY-1 plasmid pXWY, complete sequence	141829-141860	7	0.781
NZ_CP041435_3	3.2\|1098814\|32\|NZ_CP041435\|PILER-CR,CRISPRCasFinder,CRT	1098814-1098845	32	NZ_CP023408	Streptomyces fungicidicus strain TXX3120 plasmid p1, complete sequence	66681-66712	7	0.781
NZ_CP041435_2	2.10\|1082719\|33\|NZ_CP041435\|PILER-CR	1082719-1082751	33	NZ_AP012556	Mycobacterium avium subsp. hominissuis TH135 plasmid pMAH135, complete sequence	152763-152795	8	0.758
NZ_CP041435_2	2.14\|1082963\|33\|NZ_CP041435\|PILER-CR	1082963-1082995	33	NZ_CP013541	Rhizobium phaseoli strain R630 plasmid pRphaR630d, complete sequence	1036449-1036481	8	0.758
NZ_CP041435_2	2.26\|1082659\|32\|NZ_CP041435\|CRISPRCasFinder,CRT	1082659-1082690	32	NC_010180	Bacillus mycoides KBAB4 plasmid pBWB401, complete sequence	223698-223729	8	0.75
NZ_CP041435_2	2.26\|1082659\|32\|NZ_CP041435\|CRISPRCasFinder,CRT	1082659-1082690	32	NZ_CP015592	Bacillus cereus strain AR156 plasmid pAR460, complete sequence	221508-221539	8	0.75
NZ_CP041435_2	2.26\|1082659\|32\|NZ_CP041435\|CRISPRCasFinder,CRT	1082659-1082690	32	NZ_CP031072	Bacillus mycoides strain BPN401 plasmid pl395, complete sequence	147474-147505	8	0.75
NZ_CP041435_2	2.26\|1082659\|32\|NZ_CP041435\|CRISPRCasFinder,CRT	1082659-1082690	32	NZ_CP040345	Bacillus albus strain DLOU-Yingkou plasmid unnamed1, complete sequence	374123-374154	8	0.75
NZ_CP041435_2	2.26\|1082659\|32\|NZ_CP041435\|CRISPRCasFinder,CRT	1082659-1082690	32	NZ_CP009368	Bacillus cereus strain FM1 plasmid unnamed, complete sequence	74049-74080	8	0.75
NZ_CP041435_2	2.26\|1082659\|32\|NZ_CP041435\|CRISPRCasFinder,CRT	1082659-1082690	32	NZ_CP009691	Bacillus mycoides strain ATCC 6462 plasmid pBMX_1, complete sequence	130803-130834	8	0.75
NZ_CP041435_2	2.26\|1082659\|32\|NZ_CP041435\|CRISPRCasFinder,CRT	1082659-1082690	32	NZ_CP009336	Bacillus thuringiensis strain HD1011 plasmid 1, complete sequence	195225-195256	8	0.75
NZ_CP041435_2	2.26\|1082659\|32\|NZ_CP041435\|CRISPRCasFinder,CRT	1082659-1082690	32	NZ_CP053657	Bacillus cereus strain CTMA_1571 plasmid p.1, complete sequence	471476-471507	8	0.75
NZ_CP041435_2	2.27\|1082720\|32\|NZ_CP041435\|CRISPRCasFinder,CRT	1082720-1082751	32	NZ_AP012556	Mycobacterium avium subsp. hominissuis TH135 plasmid pMAH135, complete sequence	152763-152794	8	0.75
NZ_CP041435_2	2.11\|1082780\|33\|NZ_CP041435\|PILER-CR	1082780-1082812	33	NZ_AP022593	Mycolicibacterium arabiense strain JCM 18538 plasmid pJCM18538, complete sequence	5210758-5210790	9	0.727
NZ_CP041435_2	2.27\|1082720\|32\|NZ_CP041435\|CRISPRCasFinder,CRT	1082720-1082751	32	NZ_CP032828	Sphingomonas sp. YZ-8 plasmid unnamed1, complete sequence	161129-161160	9	0.719
NZ_CP041435_2	2.28\|1082781\|32\|NZ_CP041435\|CRISPRCasFinder,CRT	1082781-1082812	32	NZ_AP022593	Mycolicibacterium arabiense strain JCM 18538 plasmid pJCM18538, complete sequence	5210759-5210790	9	0.719
NZ_CP041435_2	2.28\|1082781\|32\|NZ_CP041435\|CRISPRCasFinder,CRT	1082781-1082812	32	NZ_AP014579	Burkholderia sp. RPE67 plasmid p1, complete sequence	191956-191987	9	0.719
NZ_CP041435_2	2.28\|1082781\|32\|NZ_CP041435\|CRISPRCasFinder,CRT	1082781-1082812	32	NC_016626	Burkholderia sp. YI23 plasmid byi_1p, complete sequence	1498191-1498222	9	0.719
NZ_CP041435_2	2.31\|1082964\|32\|NZ_CP041435\|CRISPRCasFinder,CRT	1082964-1082995	32	NZ_CP013541	Rhizobium phaseoli strain R630 plasmid pRphaR630d, complete sequence	1036450-1036481	9	0.719
NZ_CP041435_2	2.31\|1082964\|32\|NZ_CP041435\|CRISPRCasFinder,CRT	1082964-1082995	32	NZ_AP014579	Burkholderia sp. RPE67 plasmid p1, complete sequence	823434-823465	9	0.719
NZ_CP041435_2	2.31\|1082964\|32\|NZ_CP041435\|CRISPRCasFinder,CRT	1082964-1082995	32	NC_016626	Burkholderia sp. YI23 plasmid byi_1p, complete sequence	682589-682620	9	0.719
NZ_CP041435_2	2.32\|1083025\|32\|NZ_CP041435\|CRISPRCasFinder,CRT	1083025-1083056	32	NC_017140	Bacillus megaterium WSH-002 plasmid WSH-002_p2, complete sequence	5097-5128	9	0.719
NZ_CP041435_2	2.34\|1083147\|32\|NZ_CP041435\|CRISPRCasFinder,CRT	1083147-1083178	32	MK249151	Blackfly microvirus SF02 isolate 049, complete genome	1908-1939	9	0.719
NZ_CP041435_3	3.2\|1098814\|32\|NZ_CP041435\|PILER-CR,CRISPRCasFinder,CRT	1098814-1098845	32	NZ_CP020898	Rhizobium phaseoli Brasil 5 strain Bra5 plasmid pRetBra5b, complete sequence	46007-46038	9	0.719
NZ_CP041435_3	3.2\|1098814\|32\|NZ_CP041435\|PILER-CR,CRISPRCasFinder,CRT	1098814-1098845	32	NZ_CP013555	Rhizobium phaseoli strain N931 plasmid pRphaN931c, complete sequence	125777-125808	9	0.719
NZ_CP041435_3	3.2\|1098814\|32\|NZ_CP041435\|PILER-CR,CRISPRCasFinder,CRT	1098814-1098845	32	NZ_CP020950	Rhizobium sp. CIAT894 plasmid pRheCIAT894c, complete sequence	134655-134686	9	0.719
NZ_CP041435_3	3.2\|1098814\|32\|NZ_CP041435\|PILER-CR,CRISPRCasFinder,CRT	1098814-1098845	32	NZ_CP013587	Rhizobium phaseoli strain N161 plasmid pRphaN161b, complete sequence	68724-68755	9	0.719
NZ_CP041435_3	3.2\|1098814\|32\|NZ_CP041435\|PILER-CR,CRISPRCasFinder,CRT	1098814-1098845	32	NZ_CP043499	Rhizobium grahamii strain BG7 plasmid unnamed, complete sequence	166140-166171	9	0.719
NZ_CP041435_3	3.2\|1098814\|32\|NZ_CP041435\|PILER-CR,CRISPRCasFinder,CRT	1098814-1098845	32	NZ_CP013598	Rhizobium sp. N741 plasmid pRspN741c, complete sequence	103164-103195	9	0.719
NZ_CP041435_3	3.2\|1098814\|32\|NZ_CP041435\|PILER-CR,CRISPRCasFinder,CRT	1098814-1098845	32	NZ_CP013578	Rhizobium phaseoli strain N671 plasmid pRphaN671d, complete sequence	125386-125417	9	0.719
NZ_CP041435_3	3.2\|1098814\|32\|NZ_CP041435\|PILER-CR,CRISPRCasFinder,CRT	1098814-1098845	32	NZ_CP013544	Rhizobium phaseoli strain R620 plasmid pRphaR620b, complete sequence	36015-36046	9	0.719
NZ_CP041435_3	3.2\|1098814\|32\|NZ_CP041435\|PILER-CR,CRISPRCasFinder,CRT	1098814-1098845	32	NZ_CP013566	Rhizobium phaseoli strain N831 plasmid pRphaN831c, complete sequence	125777-125808	9	0.719
NZ_CP041435_3	3.2\|1098814\|32\|NZ_CP041435\|PILER-CR,CRISPRCasFinder,CRT	1098814-1098845	32	NZ_CP013502	Rhizobium esperanzae strain N561 plasmid pRspN561b, complete sequence	103085-103116	9	0.719
NZ_CP041435_3	3.2\|1098814\|32\|NZ_CP041435\|PILER-CR,CRISPRCasFinder,CRT	1098814-1098845	32	NZ_CP013508	Rhizobium sp. N1341 plasmid pRspN1341c, complete sequence	103164-103195	9	0.719
NZ_CP041435_3	3.2\|1098814\|32\|NZ_CP041435\|PILER-CR,CRISPRCasFinder,CRT	1098814-1098845	32	NZ_CP013519	Rhizobium sp. N113 plasmid pRspN113b, complete sequence	103163-103194	9	0.719
NZ_CP041435_3	3.2\|1098814\|32\|NZ_CP041435\|PILER-CR,CRISPRCasFinder,CRT	1098814-1098845	32	NZ_CP013572	Rhizobium phaseoli strain N771 plasmid pRphaN671d, complete sequence	125386-125417	9	0.719
NZ_CP041435_3	3.2\|1098814\|32\|NZ_CP041435\|PILER-CR,CRISPRCasFinder,CRT	1098814-1098845	32	NZ_CP013492	Rhizobium sp. N6212 plasmid pRspN6212b, complete sequence	103161-103192	9	0.719
NZ_CP041435_3	3.2\|1098814\|32\|NZ_CP041435\|PILER-CR,CRISPRCasFinder,CRT	1098814-1098845	32	NZ_CP013497	Rhizobium sp. N621 plasmid pRspN621b, complete sequence	103161-103192	9	0.719
NZ_CP041435_3	3.2\|1098814\|32\|NZ_CP041435\|PILER-CR,CRISPRCasFinder,CRT	1098814-1098845	32	NZ_CP013592	Rhizobium sp. N871 plasmid pRspN871b, complete sequence	103085-103116	9	0.719
NZ_CP041435_3	3.2\|1098814\|32\|NZ_CP041435\|PILER-CR,CRISPRCasFinder,CRT	1098814-1098845	32	CP007643	Rhizobium etli bv. phaseoli str. IE4803 plasmid pRetIE4803b, complete sequence	92301-92332	9	0.719
NZ_CP041435_3	3.2\|1098814\|32\|NZ_CP041435\|PILER-CR,CRISPRCasFinder,CRT	1098814-1098845	32	NC_010996	Rhizobium etli CIAT 652 plasmid pB, complete sequence	100863-100894	9	0.719
NZ_CP041435_3	3.2\|1098814\|32\|NZ_CP041435\|PILER-CR,CRISPRCasFinder,CRT	1098814-1098845	32	NZ_CP034999	Rhizobium acidisoli strain FH23 plasmid pRapFH23a, complete sequence	97248-97279	9	0.719
NZ_CP041435_3	3.3\|1098875\|32\|NZ_CP041435\|PILER-CR,CRISPRCasFinder,CRT	1098875-1098906	32	NZ_CP033139	Vibrio owensii strain 1700302 plasmid pVOWZ1, complete sequence	115828-115859	9	0.719
NZ_CP041435_3	3.3\|1098875\|32\|NZ_CP041435\|PILER-CR,CRISPRCasFinder,CRT	1098875-1098906	32	KY579375	Sulfolobus spindle-shaped virus 3 strain REY 15/4, complete genome	4523-4554	9	0.719
NZ_CP041435_3	3.3\|1098875\|32\|NZ_CP041435\|PILER-CR,CRISPRCasFinder,CRT	1098875-1098906	32	EU030939	Sulfolobus spindle-shaped virus 5, complete genome	8793-8824	9	0.719
NZ_CP041435_3	3.3\|1098875\|32\|NZ_CP041435\|PILER-CR,CRISPRCasFinder,CRT	1098875-1098906	32	JF412294	EBPR podovirus 1, partial sequence	3991-4022	9	0.719
NZ_CP041435_2	2.9\|1082658\|33\|NZ_CP041435\|PILER-CR	1082658-1082690	33	NC_010180	Bacillus mycoides KBAB4 plasmid pBWB401, complete sequence	223697-223729	10	0.697
NZ_CP041435_2	2.9\|1082658\|33\|NZ_CP041435\|PILER-CR	1082658-1082690	33	NZ_CP015592	Bacillus cereus strain AR156 plasmid pAR460, complete sequence	221507-221539	10	0.697
NZ_CP041435_2	2.9\|1082658\|33\|NZ_CP041435\|PILER-CR	1082658-1082690	33	NZ_CP040345	Bacillus albus strain DLOU-Yingkou plasmid unnamed1, complete sequence	374122-374154	10	0.697
NZ_CP041435_2	2.9\|1082658\|33\|NZ_CP041435\|PILER-CR	1082658-1082690	33	NZ_CP009691	Bacillus mycoides strain ATCC 6462 plasmid pBMX_1, complete sequence	130802-130834	10	0.697
NZ_CP041435_2	2.9\|1082658\|33\|NZ_CP041435\|PILER-CR	1082658-1082690	33	NZ_CP009336	Bacillus thuringiensis strain HD1011 plasmid 1, complete sequence	195224-195256	10	0.697
NZ_CP041435_2	2.9\|1082658\|33\|NZ_CP041435\|PILER-CR	1082658-1082690	33	NZ_CP031072	Bacillus mycoides strain BPN401 plasmid pl395, complete sequence	147474-147506	10	0.697
NZ_CP041435_2	2.9\|1082658\|33\|NZ_CP041435\|PILER-CR	1082658-1082690	33	NZ_CP009368	Bacillus cereus strain FM1 plasmid unnamed, complete sequence	74049-74081	10	0.697
NZ_CP041435_2	2.9\|1082658\|33\|NZ_CP041435\|PILER-CR	1082658-1082690	33	NZ_CP053657	Bacillus cereus strain CTMA_1571 plasmid p.1, complete sequence	471476-471508	10	0.697
NZ_CP041435_2	2.33\|1083086\|32\|NZ_CP041435\|CRISPRCasFinder,CRT	1083086-1083117	32	NZ_CP039902	Agrobacterium tumefaciens strain CFBP5877 plasmid pTiCFBP5877, complete sequence	33041-33072	10	0.688
NZ_CP041435_2	2.33\|1083086\|32\|NZ_CP041435\|CRISPRCasFinder,CRT	1083086-1083117	32	NZ_CP039893	Agrobacterium tumefaciens strain CFBP5499 plasmid pTiCFBP5499, complete sequence	217865-217896	10	0.688
NZ_CP041435_2	2.33\|1083086\|32\|NZ_CP041435\|CRISPRCasFinder,CRT	1083086-1083117	32	NZ_KY000025	Agrobacterium genomosp. 6 strain AR125 plasmid pTi_AR125, complete sequence	208000-208031	10	0.688
NZ_CP041435_2	2.33\|1083086\|32\|NZ_CP041435\|CRISPRCasFinder,CRT	1083086-1083117	32	NZ_KY000029	Agrobacterium genomosp. 6 strain CFBP5499 plasmid pTi_CFBP5499, complete sequence	208000-208031	10	0.688
NZ_CP041435_2	2.34\|1083147\|32\|NZ_CP041435\|CRISPRCasFinder,CRT	1083147-1083178	32	NZ_CP038854	Pantoea vagans strain LMG 24199 plasmid unnamed1, complete sequence	450688-450719	10	0.688
NZ_CP041435_3	3.2\|1098814\|32\|NZ_CP041435\|PILER-CR,CRISPRCasFinder,CRT	1098814-1098845	32	NZ_CP040452	Halomonas sp. PA16-9 plasmid p_unnamed1, complete sequence	1679246-1679277	10	0.688
NZ_CP041435_2	2.21\|1082354\|32\|NZ_CP041435\|CRISPRCasFinder,CRT	1082354-1082385	32	NZ_AP018282	Chondrocystis sp. NIES-4102 plasmid plasmid1 DNA, complete genome	109485-109516	11	0.656

1. spacer 5.1|2914862|40|NZ_CP041435|CRISPRCasFinder matches to NZ_CP041417 (Escherichia coli strain STEC711 plasmid pSTEC711_1, complete sequence) position: , mismatch: 0, identity: 1.0

gcgctgcgggtcattcttgaaattacccccgctgtgctgt	CRISPR spacer
gcgctgcgggtcattcttgaaattacccccgctgtgctgt	Protospacer
****************************************

2. spacer 6.1|3518810|24|NZ_CP041435|PILER-CR matches to NC_049946 (Escherichia virus Lambda_4A7 genome assembly, chromosome: 1) position: , mismatch: 0, identity: 1.0

cgcctttacctgatttgggtaaac	CRISPR spacer
cgcctttacctgatttgggtaaac	Protospacer
************************

3. spacer 6.1|3518810|24|NZ_CP041435|PILER-CR matches to LR595861 (Escherichia virus Lambda_4C10 genome assembly, chromosome: 1) position: , mismatch: 0, identity: 1.0

cgcctttacctgatttgggtaaac	CRISPR spacer
cgcctttacctgatttgggtaaac	Protospacer
************************

4. spacer 6.2|3518857|25|NZ_CP041435|PILER-CR matches to NC_049946 (Escherichia virus Lambda_4A7 genome assembly, chromosome: 1) position: , mismatch: 0, identity: 1.0

tttacctctttcaggtaaactttat	CRISPR spacer
tttacctctttcaggtaaactttat	Protospacer
*************************

5. spacer 6.2|3518857|25|NZ_CP041435|PILER-CR matches to LR595861 (Escherichia virus Lambda_4C10 genome assembly, chromosome: 1) position: , mismatch: 0, identity: 1.0

tttacctctttcaggtaaactttat	CRISPR spacer
tttacctctttcaggtaaactttat	Protospacer
*************************

6. spacer 6.1|3518810|24|NZ_CP041435|PILER-CR matches to NZ_AP023208 (Escherichia coli strain TUM18781 plasmid pMTY18781-3, complete sequence) position: , mismatch: 1, identity: 0.958

cgcctttacctgatttgggtaaac	CRISPR spacer
tgcctttacctgatttgggtaaac	Protospacer
.***********************

7. spacer 6.2|3518857|25|NZ_CP041435|PILER-CR matches to NZ_AP023208 (Escherichia coli strain TUM18781 plasmid pMTY18781-3, complete sequence) position: , mismatch: 1, identity: 0.96

tttacctctttcaggtaaactttat	CRISPR spacer
tttacctctttaaggtaaactttat	Protospacer
*********** *************

8. spacer 4.1|2255265|38|NZ_CP041435|CRISPRCasFinder matches to NZ_CP043437 (Enterobacter sp. LU1 plasmid unnamed) position: , mismatch: 2, identity: 0.947

cggacgcaggatggtgcgttcaattggactcgaaccaa	CRISPR spacer
cagacgcagaatggtgcgttcaattggactcgaaccaa	Protospacer
*.*******.****************************

9. spacer 6.2|3518857|25|NZ_CP041435|PILER-CR matches to NZ_CP015341 (Lactobacillus brevis strain 100D8 plasmid unnamed3, complete sequence) position: , mismatch: 4, identity: 0.84

tttacctctttcaggtaaactttat	CRISPR spacer
ggtatctcattcaggtaaactttat	Protospacer
  **.*** ****************

10. spacer 3.2|1098814|32|NZ_CP041435|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP019314 (Tateyamaria omphalii strain DOK1-4 plasmid pDOK1-4-2, complete sequence) position: , mismatch: 6, identity: 0.812

ccaccgttttcgcccaccagggcgcacaaccc-	CRISPR spacer
gcaccgttctcgcccaacagggcg-acaatctc	Protospacer
 *******.******* ******* ****.*.

11. spacer 2.24|1082537|32|NZ_CP041435|CRISPRCasFinder,CRT matches to NC_021289 (Burkholderia insecticola plasmid p1, complete sequence) position: , mismatch: 7, identity: 0.781

-gtctgtgatggcctgctcgtgagtccgcggcg	CRISPR spacer
cgcgtg-gatggcctgctcgtcagttcgcgcct	Protospacer
 *. ** ************** ***.**** *

12. spacer 2.31|1082964|32|NZ_CP041435|CRISPRCasFinder,CRT matches to NZ_CP026333 (Pseudomonas sp. XWY-1 plasmid pXWY, complete sequence) position: , mismatch: 7, identity: 0.781

cctagcccgattatcggcatgagcgatgcgga	CRISPR spacer
ccgcgcccgatcatcgccatgagcgatatggg	Protospacer
**  *******.**** **********..**.

13. spacer 3.2|1098814|32|NZ_CP041435|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP023408 (Streptomyces fungicidicus strain TXX3120 plasmid p1, complete sequence) position: , mismatch: 7, identity: 0.781

ccaccgttttcgcccaccagggcgcacaaccc-	CRISPR spacer
ccaccgtcttcgccgaccagggca-acgtcctc	Protospacer
*******.****** ********. **. **.

14. spacer 2.10|1082719|33|NZ_CP041435|PILER-CR matches to NZ_AP012556 (Mycobacterium avium subsp. hominissuis TH135 plasmid pMAH135, complete sequence) position: , mismatch: 8, identity: 0.758

gagcgtcaatcagcgcgtctatcgcgtcacttt	CRISPR spacer
gggcgtcaatgagcgcgtcgatcgcggcgggat	Protospacer
*.******** ******** ****** *.   *

15. spacer 2.14|1082963|33|NZ_CP041435|PILER-CR matches to NZ_CP013541 (Rhizobium phaseoli strain R630 plasmid pRphaR630d, complete sequence) position: , mismatch: 8, identity: 0.758

---gcctagcccgattatcggcatgagcgatgcgga	CRISPR spacer
ttgaattag---gattatcgacatgagcgatacgga	Protospacer
   . .***   ********.**********.****

16. spacer 2.26|1082659|32|NZ_CP041435|CRISPRCasFinder,CRT matches to NC_010180 (Bacillus mycoides KBAB4 plasmid pBWB401, complete sequence) position: , mismatch: 8, identity: 0.75

cgttctg---aatccgatattcttcagcaccttca	CRISPR spacer
---tccaaacaatccgatattcttcctcaccttct	Protospacer
   **..   ***************  *******

17. spacer 2.26|1082659|32|NZ_CP041435|CRISPRCasFinder,CRT matches to NZ_CP015592 (Bacillus cereus strain AR156 plasmid pAR460, complete sequence) position: , mismatch: 8, identity: 0.75

cgttctg---aatccgatattcttcagcaccttca	CRISPR spacer
---tccaaacaatccgatattcttcctcaccttct	Protospacer
   **..   ***************  *******

18. spacer 2.26|1082659|32|NZ_CP041435|CRISPRCasFinder,CRT matches to NZ_CP031072 (Bacillus mycoides strain BPN401 plasmid pl395, complete sequence) position: , mismatch: 8, identity: 0.75

cgttctg---aatccgatattcttcagcaccttca	CRISPR spacer
---tccaaacaatccgatattcttcctcaccttct	Protospacer
   **..   ***************  *******

19. spacer 2.26|1082659|32|NZ_CP041435|CRISPRCasFinder,CRT matches to NZ_CP040345 (Bacillus albus strain DLOU-Yingkou plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.75

cgttctg---aatccgatattcttcagcaccttca	CRISPR spacer
---tccaaacaatccgatattcttcctcaccttct	Protospacer
   **..   ***************  *******

20. spacer 2.26|1082659|32|NZ_CP041435|CRISPRCasFinder,CRT matches to NZ_CP009368 (Bacillus cereus strain FM1 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.75

cgttctg---aatccgatattcttcagcaccttca	CRISPR spacer
---tccaaacaatccgatattcttcctcaccttct	Protospacer
   **..   ***************  *******

21. spacer 2.26|1082659|32|NZ_CP041435|CRISPRCasFinder,CRT matches to NZ_CP009691 (Bacillus mycoides strain ATCC 6462 plasmid pBMX_1, complete sequence) position: , mismatch: 8, identity: 0.75

cgttctg---aatccgatattcttcagcaccttca	CRISPR spacer
---tccaaacaatccgatattcttcctcaccttct	Protospacer
   **..   ***************  *******

22. spacer 2.26|1082659|32|NZ_CP041435|CRISPRCasFinder,CRT matches to NZ_CP009336 (Bacillus thuringiensis strain HD1011 plasmid 1, complete sequence) position: , mismatch: 8, identity: 0.75

cgttctg---aatccgatattcttcagcaccttca	CRISPR spacer
---tccaaacaatccgatattcttcctcaccttct	Protospacer
   **..   ***************  *******

23. spacer 2.26|1082659|32|NZ_CP041435|CRISPRCasFinder,CRT matches to NZ_CP053657 (Bacillus cereus strain CTMA_1571 plasmid p.1, complete sequence) position: , mismatch: 8, identity: 0.75

cgttctg---aatccgatattcttcagcaccttca	CRISPR spacer
---tccaaacaatccgatattcttcctcaccttct	Protospacer
   **..   ***************  *******

24. spacer 2.27|1082720|32|NZ_CP041435|CRISPRCasFinder,CRT matches to NZ_AP012556 (Mycobacterium avium subsp. hominissuis TH135 plasmid pMAH135, complete sequence) position: , mismatch: 8, identity: 0.75

agcgtcaatcagcgcgtctatcgcgtcacttt	CRISPR spacer
ggcgtcaatgagcgcgtcgatcgcggcgggat	Protospacer
.******** ******** ****** *.   *

25. spacer 2.11|1082780|33|NZ_CP041435|PILER-CR matches to NZ_AP022593 (Mycolicibacterium arabiense strain JCM 18538 plasmid pJCM18538, complete sequence) position: , mismatch: 9, identity: 0.727

gatttgggggtatgagagcgccgagccgttcgg	CRISPR spacer
ggtcgaacggtatgcgggcgccgagccgttcga	Protospacer
*.*. .. ****** *.***************.

26. spacer 2.27|1082720|32|NZ_CP041435|CRISPRCasFinder,CRT matches to NZ_CP032828 (Sphingomonas sp. YZ-8 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.719

agcgtcaatcagcgcgtctatcgcgtcacttt	CRISPR spacer
gaactcaatcagcgcgttcatcgcgtcgcgat	Protospacer
..  *************..********.*  *

27. spacer 2.28|1082781|32|NZ_CP041435|CRISPRCasFinder,CRT matches to NZ_AP022593 (Mycolicibacterium arabiense strain JCM 18538 plasmid pJCM18538, complete sequence) position: , mismatch: 9, identity: 0.719

atttgggggtatgagagcgccgagccgttcgg	CRISPR spacer
gtcgaacggtatgcgggcgccgagccgttcga	Protospacer
.*. .. ****** *.***************.

28. spacer 2.28|1082781|32|NZ_CP041435|CRISPRCasFinder,CRT matches to NZ_AP014579 (Burkholderia sp. RPE67 plasmid p1, complete sequence) position: , mismatch: 9, identity: 0.719

atttgggggtatgagagcgccgagccgttcgg	CRISPR spacer
aaacgttcgtatgagcgcgccgagtcgttcgt	Protospacer
*  .*   ******* ********.******

29. spacer 2.28|1082781|32|NZ_CP041435|CRISPRCasFinder,CRT matches to NC_016626 (Burkholderia sp. YI23 plasmid byi_1p, complete sequence) position: , mismatch: 9, identity: 0.719

atttgggggtatgagagcgccgagccgttcgg	CRISPR spacer
aaacgttcgtatgagcgcgccgagtcgttcgt	Protospacer
*  .*   ******* ********.******

30. spacer 2.31|1082964|32|NZ_CP041435|CRISPRCasFinder,CRT matches to NZ_CP013541 (Rhizobium phaseoli strain R630 plasmid pRphaR630d, complete sequence) position: , mismatch: 9, identity: 0.719

cctagcccgattatcggcatgagcgatgcgga	CRISPR spacer
tgaattaggattatcgacatgagcgatacgga	Protospacer
.  * .  ********.**********.****

31. spacer 2.31|1082964|32|NZ_CP041435|CRISPRCasFinder,CRT matches to NZ_AP014579 (Burkholderia sp. RPE67 plasmid p1, complete sequence) position: , mismatch: 9, identity: 0.719

cctagcccgattatcggcatgagcgatgcgga	CRISPR spacer
gttgcggcgatcatcggcatgggcgatgcgta	Protospacer
 .*.   ****.*********.******** *

32. spacer 2.31|1082964|32|NZ_CP041435|CRISPRCasFinder,CRT matches to NC_016626 (Burkholderia sp. YI23 plasmid byi_1p, complete sequence) position: , mismatch: 9, identity: 0.719

cctagcccgattatcggcatgagcgatgcgga	CRISPR spacer
gttgcggcgatcatcggcatgggcgatgcgta	Protospacer
 .*.   ****.*********.******** *

33. spacer 2.32|1083025|32|NZ_CP041435|CRISPRCasFinder,CRT matches to NC_017140 (Bacillus megaterium WSH-002 plasmid WSH-002_p2, complete sequence) position: , mismatch: 9, identity: 0.719

tcgaagaagaaagggaaataatgcgaggaacg	CRISPR spacer
atggagaagaaagggaaacaaagcgagcgcgg	Protospacer
 .*.**************.** ***** .  *

34. spacer 2.34|1083147|32|NZ_CP041435|CRISPRCasFinder,CRT matches to MK249151 (Blackfly microvirus SF02 isolate 049, complete genome) position: , mismatch: 9, identity: 0.719

cgcgagagccagcaaaacgccagggcacaaaa	CRISPR spacer
gccatgtcccaacaaaacgccagggaacaaat	Protospacer
  *. *  ***.************* *****

35. spacer 3.2|1098814|32|NZ_CP041435|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP020898 (Rhizobium phaseoli Brasil 5 strain Bra5 plasmid pRetBra5b, complete sequence) position: , mismatch: 9, identity: 0.719

ccaccgttttcgcccaccagggcgcacaaccc	CRISPR spacer
cgtccgcgttcgcccaccagggcgcagacgat	Protospacer
*  ***. ****************** *   .

36. spacer 3.2|1098814|32|NZ_CP041435|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013555 (Rhizobium phaseoli strain N931 plasmid pRphaN931c, complete sequence) position: , mismatch: 9, identity: 0.719

ccaccgttttcgcccaccagggcgcacaaccc	CRISPR spacer
cgtccgcgttcgcccaccagggcgcagacgat	Protospacer
*  ***. ****************** *   .

37. spacer 3.2|1098814|32|NZ_CP041435|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP020950 (Rhizobium sp. CIAT894 plasmid pRheCIAT894c, complete sequence) position: , mismatch: 9, identity: 0.719

ccaccgttttcgcccaccagggcgcacaaccc	CRISPR spacer
cgtccgcgttcgcccaccagggcgcagacgat	Protospacer
*  ***. ****************** *   .

38. spacer 3.2|1098814|32|NZ_CP041435|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013587 (Rhizobium phaseoli strain N161 plasmid pRphaN161b, complete sequence) position: , mismatch: 9, identity: 0.719

ccaccgttttcgcccaccagggcgcacaaccc	CRISPR spacer
cgtccgcgttcgcccaccagggcgcagacgat	Protospacer
*  ***. ****************** *   .

39. spacer 3.2|1098814|32|NZ_CP041435|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP043499 (Rhizobium grahamii strain BG7 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.719

ccaccgttttcgcccaccagggcgcacaaccc	CRISPR spacer
gcaccgttttcgccgatcagggcggtgacctt	Protospacer
 ************* *.*******   * *..

40. spacer 3.2|1098814|32|NZ_CP041435|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013598 (Rhizobium sp. N741 plasmid pRspN741c, complete sequence) position: , mismatch: 9, identity: 0.719

ccaccgttttcgcccaccagggcgcacaaccc	CRISPR spacer
cgtccgcgttcgcccaccagggcgcagacgat	Protospacer
*  ***. ****************** *   .

41. spacer 3.2|1098814|32|NZ_CP041435|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013578 (Rhizobium phaseoli strain N671 plasmid pRphaN671d, complete sequence) position: , mismatch: 9, identity: 0.719

ccaccgttttcgcccaccagggcgcacaaccc	CRISPR spacer
cgtccgcgttcgcccaccagggcgcagacgat	Protospacer
*  ***. ****************** *   .

42. spacer 3.2|1098814|32|NZ_CP041435|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013544 (Rhizobium phaseoli strain R620 plasmid pRphaR620b, complete sequence) position: , mismatch: 9, identity: 0.719

ccaccgttttcgcccaccagggcgcacaaccc	CRISPR spacer
cgtccgcgttcgcccaccagggcgcagacgat	Protospacer
*  ***. ****************** *   .

43. spacer 3.2|1098814|32|NZ_CP041435|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013566 (Rhizobium phaseoli strain N831 plasmid pRphaN831c, complete sequence) position: , mismatch: 9, identity: 0.719

ccaccgttttcgcccaccagggcgcacaaccc	CRISPR spacer
cgtccgcgttcgcccaccagggcgcagacgat	Protospacer
*  ***. ****************** *   .

44. spacer 3.2|1098814|32|NZ_CP041435|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013502 (Rhizobium esperanzae strain N561 plasmid pRspN561b, complete sequence) position: , mismatch: 9, identity: 0.719

ccaccgttttcgcccaccagggcgcacaaccc	CRISPR spacer
cgtccgcgttcgcccaccagggcgcagacgat	Protospacer
*  ***. ****************** *   .

45. spacer 3.2|1098814|32|NZ_CP041435|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013508 (Rhizobium sp. N1341 plasmid pRspN1341c, complete sequence) position: , mismatch: 9, identity: 0.719

ccaccgttttcgcccaccagggcgcacaaccc	CRISPR spacer
cgtccgcgttcgcccaccagggcgcagacgat	Protospacer
*  ***. ****************** *   .

46. spacer 3.2|1098814|32|NZ_CP041435|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013519 (Rhizobium sp. N113 plasmid pRspN113b, complete sequence) position: , mismatch: 9, identity: 0.719

ccaccgttttcgcccaccagggcgcacaaccc	CRISPR spacer
cgtccgcgttcgcccaccagggcgcagacgat	Protospacer
*  ***. ****************** *   .

47. spacer 3.2|1098814|32|NZ_CP041435|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013572 (Rhizobium phaseoli strain N771 plasmid pRphaN671d, complete sequence) position: , mismatch: 9, identity: 0.719

ccaccgttttcgcccaccagggcgcacaaccc	CRISPR spacer
cgtccgcgttcgcccaccagggcgcagacgat	Protospacer
*  ***. ****************** *   .

48. spacer 3.2|1098814|32|NZ_CP041435|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013492 (Rhizobium sp. N6212 plasmid pRspN6212b, complete sequence) position: , mismatch: 9, identity: 0.719

ccaccgttttcgcccaccagggcgcacaaccc	CRISPR spacer
cgtccgcgttcgcccaccagggcgcagacgat	Protospacer
*  ***. ****************** *   .

49. spacer 3.2|1098814|32|NZ_CP041435|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013497 (Rhizobium sp. N621 plasmid pRspN621b, complete sequence) position: , mismatch: 9, identity: 0.719

ccaccgttttcgcccaccagggcgcacaaccc	CRISPR spacer
cgtccgcgttcgcccaccagggcgcagacgat	Protospacer
*  ***. ****************** *   .

50. spacer 3.2|1098814|32|NZ_CP041435|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013592 (Rhizobium sp. N871 plasmid pRspN871b, complete sequence) position: , mismatch: 9, identity: 0.719

ccaccgttttcgcccaccagggcgcacaaccc	CRISPR spacer
cgtccgcgttcgcccaccagggcgcagacgat	Protospacer
*  ***. ****************** *   .

51. spacer 3.2|1098814|32|NZ_CP041435|PILER-CR,CRISPRCasFinder,CRT matches to CP007643 (Rhizobium etli bv. phaseoli str. IE4803 plasmid pRetIE4803b, complete sequence) position: , mismatch: 9, identity: 0.719

ccaccgttttcgcccaccagggcgcacaaccc	CRISPR spacer
cgtccgcgttcgcccaccagggcgcagacgat	Protospacer
*  ***. ****************** *   .

52. spacer 3.2|1098814|32|NZ_CP041435|PILER-CR,CRISPRCasFinder,CRT matches to NC_010996 (Rhizobium etli CIAT 652 plasmid pB, complete sequence) position: , mismatch: 9, identity: 0.719

ccaccgttttcgcccaccagggcgcacaaccc	CRISPR spacer
cgtccgcgttcgcccaccagggcgcagacgat	Protospacer
*  ***. ****************** *   .

53. spacer 3.2|1098814|32|NZ_CP041435|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP034999 (Rhizobium acidisoli strain FH23 plasmid pRapFH23a, complete sequence) position: , mismatch: 9, identity: 0.719

ccaccgttttcgcccaccagggcgcacaaccc	CRISPR spacer
cgtccgcgttcgcccaccagggcgcagacgat	Protospacer
*  ***. ****************** *   .

54. spacer 3.3|1098875|32|NZ_CP041435|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP033139 (Vibrio owensii strain 1700302 plasmid pVOWZ1, complete sequence) position: , mismatch: 9, identity: 0.719

gaaaaagagaaggtagagaaagcggaatctgg	CRISPR spacer
gaaaaagagaatgtagaggaagcgtttttctt	Protospacer
*********** ******.*****   *..

55. spacer 3.3|1098875|32|NZ_CP041435|PILER-CR,CRISPRCasFinder,CRT matches to KY579375 (Sulfolobus spindle-shaped virus 3 strain REY 15/4, complete genome) position: , mismatch: 9, identity: 0.719

gaaaaagagaaggtagagaaagcggaatctgg	CRISPR spacer
gacaaagagaaagtagagaaagcgattttctt	Protospacer
** ********.************.  *..

56. spacer 3.3|1098875|32|NZ_CP041435|PILER-CR,CRISPRCasFinder,CRT matches to EU030939 (Sulfolobus spindle-shaped virus 5, complete genome) position: , mismatch: 9, identity: 0.719

gaaaaagagaaggtagagaaagcggaatctgg	CRISPR spacer
gacaaagagaaagtagagaaagcgattttctt	Protospacer
** ********.************.  *..

57. spacer 3.3|1098875|32|NZ_CP041435|PILER-CR,CRISPRCasFinder,CRT matches to JF412294 (EBPR podovirus 1, partial sequence) position: , mismatch: 9, identity: 0.719

gaaaaagagaaggtagagaaagcggaatctgg	CRISPR spacer
gaaaaagagaaggccgagaaagcagcgaaggc	Protospacer
*************. ********.* .   *

58. spacer 2.9|1082658|33|NZ_CP041435|PILER-CR matches to NC_010180 (Bacillus mycoides KBAB4 plasmid pBWB401, complete sequence) position: , mismatch: 10, identity: 0.697

gcgttctgaatccgatattcttcagcaccttca	CRISPR spacer
gtccaaacaatccgatattcttcctcaccttct	Protospacer
*. .    ***************  *******

59. spacer 2.9|1082658|33|NZ_CP041435|PILER-CR matches to NZ_CP015592 (Bacillus cereus strain AR156 plasmid pAR460, complete sequence) position: , mismatch: 10, identity: 0.697

gcgttctgaatccgatattcttcagcaccttca	CRISPR spacer
gtccaaacaatccgatattcttcctcaccttct	Protospacer
*. .    ***************  *******

60. spacer 2.9|1082658|33|NZ_CP041435|PILER-CR matches to NZ_CP040345 (Bacillus albus strain DLOU-Yingkou plasmid unnamed1, complete sequence) position: , mismatch: 10, identity: 0.697

gcgttctgaatccgatattcttcagcaccttca	CRISPR spacer
gtccaaacaatccgatattcttcctcaccttct	Protospacer
*. .    ***************  *******

61. spacer 2.9|1082658|33|NZ_CP041435|PILER-CR matches to NZ_CP009691 (Bacillus mycoides strain ATCC 6462 plasmid pBMX_1, complete sequence) position: , mismatch: 10, identity: 0.697

gcgttctgaatccgatattcttcagcaccttca	CRISPR spacer
gtccaaacaatccgatattcttcctcaccttct	Protospacer
*. .    ***************  *******

62. spacer 2.9|1082658|33|NZ_CP041435|PILER-CR matches to NZ_CP009336 (Bacillus thuringiensis strain HD1011 plasmid 1, complete sequence) position: , mismatch: 10, identity: 0.697

gcgttctgaatccgatattcttcagcaccttca	CRISPR spacer
gtccaaacaatccgatattcttcctcaccttct	Protospacer
*. .    ***************  *******

63. spacer 2.9|1082658|33|NZ_CP041435|PILER-CR matches to NZ_CP031072 (Bacillus mycoides strain BPN401 plasmid pl395, complete sequence) position: , mismatch: 10, identity: 0.697

gcgttctgaatccgatattcttcagcaccttca	CRISPR spacer
gtccaaacaatccgatattcttcctcaccttct	Protospacer
*. .    ***************  *******

64. spacer 2.9|1082658|33|NZ_CP041435|PILER-CR matches to NZ_CP009368 (Bacillus cereus strain FM1 plasmid unnamed, complete sequence) position: , mismatch: 10, identity: 0.697

gcgttctgaatccgatattcttcagcaccttca	CRISPR spacer
gtccaaacaatccgatattcttcctcaccttct	Protospacer
*. .    ***************  *******

65. spacer 2.9|1082658|33|NZ_CP041435|PILER-CR matches to NZ_CP053657 (Bacillus cereus strain CTMA_1571 plasmid p.1, complete sequence) position: , mismatch: 10, identity: 0.697

gcgttctgaatccgatattcttcagcaccttca	CRISPR spacer
gtccaaacaatccgatattcttcctcaccttct	Protospacer
*. .    ***************  *******

66. spacer 2.33|1083086|32|NZ_CP041435|CRISPRCasFinder,CRT matches to NZ_CP039902 (Agrobacterium tumefaciens strain CFBP5877 plasmid pTiCFBP5877, complete sequence) position: , mismatch: 10, identity: 0.688

tattacgcgccagcaatgctgacagcggcaaa	CRISPR spacer
agcatggcgccagcaatggcgacagcggccag	Protospacer
 ..   ************ .********* *.

67. spacer 2.33|1083086|32|NZ_CP041435|CRISPRCasFinder,CRT matches to NZ_CP039893 (Agrobacterium tumefaciens strain CFBP5499 plasmid pTiCFBP5499, complete sequence) position: , mismatch: 10, identity: 0.688

tattacgcgccagcaatgctgacagcggcaaa	CRISPR spacer
agcatggcgccagcaatggcgacagcggccag	Protospacer
 ..   ************ .********* *.

68. spacer 2.33|1083086|32|NZ_CP041435|CRISPRCasFinder,CRT matches to NZ_KY000025 (Agrobacterium genomosp. 6 strain AR125 plasmid pTi_AR125, complete sequence) position: , mismatch: 10, identity: 0.688

tattacgcgccagcaatgctgacagcggcaaa	CRISPR spacer
agcatggcgccagcaatggcgacagcggccag	Protospacer
 ..   ************ .********* *.

69. spacer 2.33|1083086|32|NZ_CP041435|CRISPRCasFinder,CRT matches to NZ_KY000029 (Agrobacterium genomosp. 6 strain CFBP5499 plasmid pTi_CFBP5499, complete sequence) position: , mismatch: 10, identity: 0.688

tattacgcgccagcaatgctgacagcggcaaa	CRISPR spacer
agcatggcgccagcaatggcgacagcggccag	Protospacer
 ..   ************ .********* *.

70. spacer 2.34|1083147|32|NZ_CP041435|CRISPRCasFinder,CRT matches to NZ_CP038854 (Pantoea vagans strain LMG 24199 plasmid unnamed1, complete sequence) position: , mismatch: 10, identity: 0.688

cgcgagagccagcaaaacgccagggcacaaaa	CRISPR spacer
ggaaggagcctgcaaagcgccagggcaccggt	Protospacer
 * ..***** *****.*********** ..

71. spacer 3.2|1098814|32|NZ_CP041435|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP040452 (Halomonas sp. PA16-9 plasmid p_unnamed1, complete sequence) position: , mismatch: 10, identity: 0.688

ccaccgttttcgcccaccagggcgcacaaccc	CRISPR spacer
ccaccgtattcgccaaccagggcggcagggaa	Protospacer
******* ****** *********   ..

72. spacer 2.21|1082354|32|NZ_CP041435|CRISPRCasFinder,CRT matches to NZ_AP018282 (Chondrocystis sp. NIES-4102 plasmid plasmid1 DNA, complete genome) position: , mismatch: 11, identity: 0.656

acggcgtggattgagggacgggtatttggtcc	CRISPR spacer
gcggagtggattgaggtacgggtaaagaagga	Protospacer
.*** *********** *******   ..

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

781241 : 852955

Pseudomonas_phage(25.0%)

protease,integrase,transposase

attL 809548:809564|attR 816847:816863

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001034504.1\|781241_785810_+\|protease	lipoprotein metalloprotease SslE	NA	NA	NA	NA
WP_001317326.1\|785949_786759_+	prepilin peptidase	NA	NA	NA	NA
WP_001349452.1\|786824_787235_+	GspS/AspS pilotin family protein	NA	NA	NA	NA
WP_001317325.1\|787252_788212_+	type II secretion system protein GspC	NA	NA	NA	NA
WP_000498824.1\|788241_790302_+	type II secretion system secretin GspD	NA	NA	NA	NA
WP_000249368.1\|790301_791795_+	type II secretion system ATPase GspE	NA	NA	NA	NA
WP_001173448.1\|791794_793018_+	type II secretion system inner membrane protein GspF	NA	NA	NA	NA
WP_001087296.1\|793034_793490_+	type II secretion system major pseudopilin GspG	NA	NA	NA	NA
WP_001115139.1\|793493_794057_+	type II secretion system minor pseudopilin GspH	NA	NA	NA	NA
WP_000820125.1\|794053_794425_+	type II secretion system minor pseudopilin GspI	NA	NA	NA	NA
WP_001255030.1\|794421_795027_+	type II secretion system minor pseudopilin GspJ	NA	NA	NA	NA
WP_000633239.1\|795023_796001_+	type II secretion system minor pseudopilin GspK	NA	NA	NA	NA
WP_000094989.1\|795997_797176_+	type II secretion system protein GspL	NA	NA	NA	NA
WP_000942795.1\|797177_797714_+	type II secretion system protein	NA	NA	NA	NA
WP_096858932.1\|798048_799584_-	EAL domain-containing protein	NA	NA	NA	NA
WP_001399388.1\|800161_800503_-	hypothetical protein	NA	NA	NA	NA
WP_072713926.1\|800800_801289_-	hypothetical protein	NA	NA	NA	NA
WP_072713924.1\|801285_801663_-	toxin	NA	NA	NA	NA
WP_072713922.1\|801709_802084_-	type IV toxin-antitoxin system YeeU family antitoxin	NA	NA	NA	NA
WP_096858933.1\|802133_802778_-	antitoxin of toxin-antitoxin stability system	A0A2I6PI07	Pseudomonas_phage	3.4e-28	33.6
WP_000692326.1\|802796_803018_-	DUF987 domain-containing protein	A0A142F0X9	Klebsiella_phage	1.4e-10	45.8
WP_122996610.1\|803080_803557_-	RadC family protein	NA	NA	NA	NA
WP_000206671.1\|803572_804058_-	antirestriction protein	A9J566	Pseudomonas_phage	6.9e-13	31.7
WP_021536653.1\|804149_804968_-	DUF945 domain-containing protein	A0A2C9CX26	Yersinia_phage	8.0e-46	39.0
WP_096858934.1\|805295_808142_-	autotransporter adhesin Ag43	NA	NA	NA	NA
WP_161619022.1\|808513_809386_-	GTPase family protein	NA	NA	NA	NA
809548:809564	attL	NA	NA	NA	NA
WP_001700313.1\|809826_811143_+	hypothetical protein	NA	NA	NA	NA
WP_000170427.1\|812366_814181_-	hypothetical protein	NA	NA	NA	NA
WP_001375260.1\|814719_815820_-	hypothetical protein	NA	NA	NA	NA
WP_001305361.1\|816218_816821_+\|integrase	tyrosine-type recombinase/integrase	A0A1V0E036	Clostridioides_phage	1.8e-07	33.3
WP_000998321.1\|817125_819438_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
816847:816863	attR	NA	NA	NA	NA
WP_001493615.1\|819434_820370_+	hypothetical protein	NA	NA	NA	NA
WP_072714055.1\|821180_822356_-	hypothetical protein	NA	NA	NA	NA
WP_000804439.1\|824321_824924_-	hypothetical protein	NA	NA	NA	NA
WP_001347898.1\|825017_825224_-	AlpA family transcriptional regulator	NA	NA	NA	NA
WP_001367564.1\|825607_826399_-	hypothetical protein	NA	NA	NA	NA
WP_072146520.1\|827468_827618_+	hemolysin activation protein	NA	NA	NA	NA
WP_000860849.1\|827849_828449_+	inovirus-type Gp2 protein	NA	NA	NA	NA
WP_000270955.1\|828820_829204_+	hypothetical protein	NA	NA	NA	NA
WP_024241614.1\|829200_829587_+	hypothetical protein	NA	NA	NA	NA
WP_096858936.1\|829595_830794_-\|transposase	IS3 family transposase	Q716C2	Shigella_phage	1.2e-98	57.1
WP_136769128.1\|830814_831108_-	hypothetical protein	NA	NA	NA	NA
WP_042054507.1\|831858_834168_+	ATPase	NA	NA	NA	NA
WP_000117528.1\|834171_835488_+	ATP-binding protein	NA	NA	NA	NA
WP_072714023.1\|835484_837683_+	DEAD/DEAH box helicase	NA	NA	NA	NA
WP_032318120.1\|838164_839181_+	hypothetical protein	NA	NA	NA	NA
WP_000169496.1\|839248_839548_+\|transposase	IS3 family transposase	NA	NA	NA	NA
WP_000255944.1\|839990_841013_+\|transposase	IS21-like element IS100 family transposase	A0A2L1IVA1	Escherichia_phage	1.9e-201	100.0
WP_001323403.1\|841012_841792_+	AAA family ATPase	A0A2L1IVB6	Escherichia_phage	1.5e-139	100.0
WP_032286680.1\|843022_844033_-	sulfite reductase subunit C	NA	NA	NA	NA
WP_032286679.1\|844043_844862_-	anaerobic sulfite reductase subunit AsrB	NA	NA	NA	NA
WP_072714029.1\|844865_845909_-	anaerobic sulfite reductase subunit A	NA	NA	NA	NA
WP_072714031.1\|846503_846737_+	hypothetical protein	NA	NA	NA	NA
WP_161619023.1\|847902_849189_+	hypothetical protein	NA	NA	NA	NA
WP_161619024.1\|849385_849586_-	ATP-binding protein	NA	NA	NA	NA
WP_072714039.1\|852001_852955_+\|protease	omptin family outer membrane protease	NA	NA	NA	NA

DBSCAN-SWA_2

1115719 : 1122859

Escherichia_phage(83.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001278994.1\|1115719_1116358_-	aldolase	A0A077SK32	Escherichia_phage	1.4e-82	75.0
WP_000590392.1\|1116354_1117617_-	3-oxo-tetronate kinase	A0A077SLJ7	Escherichia_phage	1.3e-135	61.4
WP_000847985.1\|1117613_1118522_-	NAD(P)-dependent oxidoreductase	A0A077SLF7	Escherichia_phage	3.0e-118	76.9
WP_001272549.1\|1118687_1119485_+	DeoR/GlpR transcriptional regulator	A0A077SK06	Escherichia_phage	5.9e-70	56.3
WP_001141330.1\|1119535_1120192_-	protein-serine/threonine phosphatase	A0A222YWF0	Escherichia_phage	4.3e-50	46.7
WP_064577946.1\|1120297_1122859_-	DNA mismatch repair protein MutS	E3T5Q7	Cafeteria_roenbergensis_virus	1.3e-30	20.6

DBSCAN-SWA_3

1714811 : 1724253

Enterobacteria_phage(85.71%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000569325.1\|1714811_1715738_+	glycine betaine ABC transporter ATP binding protein YehX	G3M9Y6	Bacillus_virus	2.8e-23	30.8
WP_000783120.1\|1715742_1716474_+	glycine betaine ABC transporter permease YehW	NA	NA	NA	NA
WP_001216963.1\|1716454_1716562_-	protein YohO	NA	NA	NA	NA
WP_001240401.1\|1716621_1717353_-	HTH-type transcriptional regulator MlrA	Q9EYF2	Enterobacteria_phage	9.7e-112	99.5
WP_001295431.1\|1717574_1719260_+	two-component regulatory system sensor histidine kinase BtsS	Q9EYF3	Enterobacteria_phage	2.5e-304	99.6
WP_000598641.1\|1719256_1719976_+	two-component system response regulator BtsR	NA	NA	NA	NA
WP_001295430.1\|1720022_1720493_+	DUF1456 family protein	Q9EYF4	Enterobacteria_phage	1.8e-82	100.0
WP_001295429.1\|1720533_1720995_-	YehR family lipoprotein	Q9EYF5	Enterobacteria_phage	1.9e-76	100.0
WP_001543461.1\|1721119_1723120_-	SWIM zinc finger family protein	Q9EYF6	Enterobacteria_phage	0.0e+00	96.1
WP_001292774.1\|1723116_1724253_-	VWA domain-containing protein	Q9EYF7	Enterobacteria_phage	1.1e-162	97.7

DBSCAN-SWA_4

1736818 : 1802345

Escherichia_phage(50.0%)

holin,terminase,capsid,head,lysis,plate,integrase,portal,tail,tRNA

attL 1764069:1764096|attR 1797261:1797288

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001295427.1\|1736818_1738852_-\|tRNA	methionine--tRNA ligase	A0A1V0SDF2	Indivirus	1.8e-54	27.6
WP_001005448.1\|1738983_1740093_+	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA
WP_001324851.1\|1740355_1740637_+	YehE family protein	NA	NA	NA	NA
WP_000830468.1\|1740929_1741472_+	fimbrial protein	NA	NA	NA	NA
WP_000677395.1\|1741552_1742227_+	fimbria/pilus periplasmic chaperone	NA	NA	NA	NA
WP_000945406.1\|1742242_1744723_+	fimbrial biogenesis outer membrane usher protein	NA	NA	NA	NA
WP_001026154.1\|1744736_1745771_+	putative fimbrial-like adhesin protein	NA	NA	NA	NA
WP_000153067.1\|1745852_1746191_-	Ni(II)/Co(II) efflux transporter accessory subunit RcnB	NA	NA	NA	NA
WP_000134576.1\|1746409_1747234_-	nickel/cobalt efflux protein RcnA	NA	NA	NA	NA
WP_000019938.1\|1747354_1747627_+	Ni(II)/Co(II)-binding transcriptional repressor RcnR	NA	NA	NA	NA
WP_001195590.1\|1747849_1748638_+	hydroxyethylthiazole kinase	NA	NA	NA	NA
WP_000822274.1\|1748634_1749435_+	bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase	NA	NA	NA	NA
WP_001315719.1\|1749499_1750318_+	glycoside hydrolase family 25 protein	D0R7H8	Paenibacillus_phage	2.3e-24	38.5
WP_000434038.1\|1750369_1751116_+	GntR family transcriptional regulator	NA	NA	NA	NA
WP_000011973.1\|1751089_1752055_-	sugar kinase	NA	NA	NA	NA
WP_000846219.1\|1752051_1753056_-	ADP-ribosylglycohydrolase family protein	A0A1S6UB21	Serratia_phage	1.3e-13	29.4
WP_161619033.1\|1753052_1754330_-	MFS transporter	NA	NA	NA	NA
WP_000129551.1\|1754586_1755639_+	class I fructose-bisphosphate aldolase	NA	NA	NA	NA
WP_000289788.1\|1755948_1756803_+	tagatose-bisphosphate aldolase subunit GatY	NA	NA	NA	NA
WP_000853892.1\|1756831_1758094_+	tagatose-bisphosphate aldolase subunit GatZ	NA	NA	NA	NA
WP_000182899.1\|1758103_1758556_+	PTS galactitol transporter subunit IIA	NA	NA	NA	NA
WP_000823272.1\|1758586_1758871_+	PTS galactitol transporter subunit IIB	NA	NA	NA	NA
WP_000490714.1\|1758874_1760230_+	galactitol permease IIC component	NA	NA	NA	NA
WP_000844219.1\|1760278_1761319_+	galactitol-1-phosphate 5-dehydrogenase	NA	NA	NA	NA
WP_000178556.1\|1761418_1762198_+	DeoR/GlpR transcriptional regulator	NA	NA	NA	NA
WP_000807362.1\|1762279_1763179_-	lipid kinase YegS	A0A1V0SBJ0	Catovirus	1.3e-12	29.0
WP_000716757.1\|1763593_1763911_+	hypothetical protein	NA	NA	NA	NA
1764069:1764096	attL	NA	NA	NA	NA
WP_000985261.1\|1764175_1765189_-\|integrase	site-specific integrase	Q83VS6	Escherichia_phage	4.1e-193	99.1
WP_000020919.1\|1765304_1765604_-	helix-turn-helix domain-containing protein	Q1JS61	Enterobacteria_phage	2.4e-48	100.0
WP_001081582.1\|1765725_1766001_+	hypothetical protein	Q1JS60	Enterobacteria_phage	1.3e-48	100.0
WP_000217670.1\|1766178_1766679_+	hypothetical protein	M1SV55	Escherichia_phage	2.6e-92	100.0
WP_074522358.1\|1766742_1766967_+	DUF2732 family protein	S4TP68	Salmonella_phage	1.5e-31	97.3
WP_001277904.1\|1766966_1767269_+	hypothetical protein	A0A0F7LCL4	Escherichia_phage	5.9e-47	99.0
WP_001113269.1\|1767268_1767493_+	TraR/DksA family transcriptional regulator	A0A0F7LDG9	Escherichia_phage	5.0e-35	98.6
WP_000027670.1\|1767489_1767765_+	hypothetical protein	M1TAP2	Escherichia_phage	6.6e-45	98.9
WP_161619034.1\|1767754_1770007_+	replication endonuclease	M1SV59	Escherichia_phage	0.0e+00	92.1
WP_000038188.1\|1771937_1772972_-\|portal	phage portal protein	Q858W8	Yersinia_virus	4.2e-201	99.4
WP_000156861.1\|1772971_1774744_-\|terminase	terminase ATPase subunit family protein	A0A0F7LCK3	Escherichia_phage	0.0e+00	99.8
WP_104725533.1\|1774917_1775772_+\|capsid	GPO family capsid scaffolding protein	Q94MD6	Enterobacteria_phage	1.1e-135	99.3
WP_001248558.1\|1775830_1776904_+\|capsid	phage major capsid protein, P2 family	Q778Y7	Enterobacteria_phage	6.7e-202	100.0
WP_000203462.1\|1776907_1777651_+\|terminase	terminase endonuclease subunit	Q94MK1	Enterobacteria_phage	2.1e-122	100.0
WP_000988636.1\|1777750_1778260_+\|head	head completion/stabilization protein	A0A0F7LDJ1	Escherichia_phage	8.6e-91	100.0
WP_000846399.1\|1778259_1778463_+\|tail	tail protein X	U5N3E7	Enterobacteria_phage	4.0e-31	100.0
WP_000123124.1\|1778466_1778748_+\|holin	holin	A0A0F7LDF8	Escherichia_phage	3.7e-43	100.0
WP_001144101.1\|1778747_1779245_+	glycoside hydrolase family 104 protein	A0A0F7LBS0	Escherichia_phage	3.1e-93	100.0
WP_028985813.1\|1779259_1779685_+	hypothetical protein	A0A0F7LBP4	Escherichia_phage	7.5e-56	92.9
WP_001355820.1\|1779672_1780116_+\|lysis	LysB family phage lysis regulatory protein	Q858W0	Yersinia_virus	6.4e-66	96.5
WP_000917139.1\|1780205_1780673_+\|tail	phage tail protein	A0A0F7LA33	Escherichia_phage	1.6e-80	97.4
WP_028985812.1\|1780665_1781118_+	phage virion morphogenesis protein	A0A0F7LDR6	Escherichia_phage	1.4e-76	99.3
WP_028985811.1\|1781184_1781820_+\|plate	phage baseplate assembly protein V	U5N3F0	Enterobacteria_phage	1.6e-110	97.2
WP_000127163.1\|1781816_1782164_+\|plate	baseplate assembly protein	A0A0F7L9X3	Escherichia_phage	1.7e-58	100.0
WP_001121474.1\|1782168_1783077_+\|plate	baseplate assembly protein	A0A0F7LCJ3	Escherichia_phage	1.2e-162	100.0
WP_028985810.1\|1783069_1783600_+\|tail	phage tail protein I	A0A0F7LDF3	Escherichia_phage	3.9e-102	99.4
WP_104725536.1\|1783610_1785821_+\|tail	phage tail protein	U5N099	Enterobacteria_phage	0.0e+00	93.3
WP_074522352.1\|1785824_1786349_+\|tail	tail fiber assembly protein	U5N0T1	Enterobacteria_phage	1.7e-89	94.3
WP_000166330.1\|1786628_1787984_-	hypothetical protein	NA	NA	NA	NA
WP_001026768.1\|1788458_1789973_-	hypothetical protein	Q38324	Lactococcus_phage	9.0e-27	26.7
WP_104725538.1\|1790557_1791748_+\|tail	phage tail sheath protein	A0A0F7LBW9	Escherichia_phage	5.3e-224	99.2
WP_001554312.1\|1791760_1792279_+\|tail	phage major tail tube protein	A0A0F7LDZ1	Escherichia_phage	3.2e-93	99.4
WP_001031303.1\|1792335_1792611_+\|tail	phage tail assembly protein	A0A0F7LDQ8	Escherichia_phage	5.7e-41	100.0
WP_000785970.1\|1792643_1792763_+\|tail	GpE family phage tail protein	A0A0F7LCR6	Escherichia_phage	1.0e-15	100.0
WP_104725539.1\|1792755_1795203_+\|tail	phage tail tape measure protein	M1T2S3	Escherichia_phage	0.0e+00	98.9
WP_047645233.1\|1795217_1795697_+\|tail	phage tail protein	Q7Y4C7	Escherichia_virus	2.5e-84	98.7
WP_161619035.1\|1795696_1796860_+	phage late control D family protein	U5N3V4	Enterobacteria_phage	1.7e-203	98.7
WP_000468308.1\|1796941_1797160_+	prophage transcriptional regulator OgrK	A0A0F7LDQ9	Escherichia_phage	4.7e-38	100.0
WP_000476011.1\|1797432_1798794_-\|tRNA	tRNA 5-hydroxyuridine modification protein YegQ	Q6DW11	Phage_TP	1.1e-217	100.0
1797261:1797288	attR	NA	NA	NA	NA
WP_001220181.1\|1798896_1799193_-	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA
WP_001307279.1\|1799194_1799491_-	type II toxin-antitoxin system ParD family antitoxin	NA	NA	NA	NA
WP_000929408.1\|1799699_1800032_-	YegP family protein	NA	NA	NA	NA
WP_000137873.1\|1800222_1800945_-	two-component system response regulator BaeR	W8CYM9	Bacillus_phage	1.9e-30	33.2
WP_000675150.1\|1800941_1802345_-	two-component system sensor histidine kinase BaeS	W8CYF6	Bacillus_phage	3.0e-32	29.0

DBSCAN-SWA_5

1848842 : 1855905

Enterobacteria_phage(42.86%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001116113.1\|1848842_1850237_+	colanic acid biosynthesis protein WcaM	A0A291LBB9	Klebsiella_phage	3.7e-19	31.8
WP_000183060.1\|1850411_1851305_+	UTP--glucose-1-phosphate uridylyltransferase GalF	A0A127AW70	Bacillus_phage	1.0e-46	42.0
WP_000699435.1\|1851677_1852763_+	dTDP-glucose 4,6-dehydratase	I7HTA3	Enterobacteria_phage	4.2e-103	54.5
WP_001023631.1\|1852762_1853662_+	dTDP-4-dehydrorhamnose reductase	A0A291LA50	Escherichia_phage	8.2e-28	34.5
WP_000857526.1\|1853719_1854598_+	glucose-1-phosphate thymidylyltransferase RfbA	I7I009	Enterobacteria_phage	1.1e-106	64.1
WP_001100785.1\|1854602_1855142_+	dTDP-4-dehydrorhamnose 3,5-epimerase	I7HJC4	Enterobacteria_phage	9.8e-53	58.1
WP_053265431.1\|1855158_1855905_+	DUF616 domain-containing protein	A0A2P0VMU2	Tetraselmis_virus	7.8e-24	32.0

DBSCAN-SWA_6

2005485 : 2060394

Enterobacteria_phage(68.52%)

holin,terminase,capsid,protease,head,plate,integrase,portal,tail,tRNA

attL 2000648:2000666|attR 2047142:2047160

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
2000648:2000666	attL	NA	NA	NA	NA
WP_001025326.1\|2005485_2007219_-\|tRNA	arginine--tRNA ligase	A0A2K9L6Z2	Tupanvirus	8.8e-87	33.7
WP_001326063.1\|2007434_2008001_+	VOC family protein	NA	NA	NA	NA
WP_001185742.1\|2008014_2008761_+	copper homeostasis protein CutC	NA	NA	NA	NA
WP_001214298.1\|2009148_2010249_+	cytochrome c	NA	NA	NA	NA
WP_097419182.1\|2010273_2012703_+	trimethylamine N-oxide reductase TorZ	NA	NA	NA	NA
WP_000564745.1\|2012867_2013839_-\|tRNA	tRNA 5-methoxyuridine(34)/uridine 5-oxyacetic acid(34) synthase CmoB	NA	NA	NA	NA
WP_000019588.1\|2013835_2014579_-	carboxy-S-adenosyl-L-methionine synthase CmoA	F5B419	Synechococcus_phage	4.6e-24	30.0
WP_000252979.1\|2014619_2015015_-	membrane protein	NA	NA	NA	NA
WP_097449987.1\|2015067_2015838_-	DUF72 domain-containing protein	Q859D1	Escherichia_coli_phage	6.1e-72	99.2
WP_161619042.1\|2015819_2017133_-\|integrase	site-specific integrase	Q8W658	Enterobacteria_phage	2.2e-255	99.5
WP_000528717.1\|2017188_2017425_-	excisionase family protein	Q8W657	Enterobacteria_phage	9.9e-42	100.0
WP_001030139.1\|2017433_2017580_-	hypothetical protein	A0A1B5FPC2	Escherichia_phage	3.1e-22	95.8
WP_021558719.1\|2017583_2017826_-	DUF4222 domain-containing protein	Q8W656	Enterobacteria_phage	6.8e-38	100.0
WP_064578864.1\|2017856_2018228_-	hypothetical protein	Q8W655	Enterobacteria_phage	4.2e-63	96.7
WP_161619043.1\|2018268_2019096_-	SPFH/Band 7/PHB domain protein	Q8W654	Enterobacteria_phage	1.2e-129	98.5
WP_161619044.1\|2019457_2020039_-	hypothetical protein	Q8W653	Enterobacteria_phage	1.1e-97	86.5
WP_000391589.1\|2020035_2020224_-	hypothetical protein	Q8W652	Enterobacteria_phage	4.5e-29	100.0
WP_161619118.1\|2020420_2020627_-	hypothetical protein	Q8W651	Enterobacteria_phage	2.4e-28	94.1
WP_161619045.1\|2020782_2021244_-	helix-turn-helix domain-containing protein	A0A1B5FPB8	Escherichia_phage	7.4e-41	71.9
WP_161619046.1\|2021389_2022079_-	LexA family transcriptional regulator	A0A1B5FPF4	Escherichia_phage	4.0e-115	87.8
WP_064732963.1\|2022212_2022512_+	Cro/Cl family transcriptional regulator	A0A1B5FPK9	Escherichia_phage	2.3e-35	90.9
WP_077883870.1\|2022588_2023443_+	ORF6N domain-containing protein	Q8W644	Enterobacteria_phage	9.2e-45	55.6
WP_001193680.1\|2023442_2023652_+	restriction alleviation protein, Lar family	NA	NA	NA	NA
WP_161619047.1\|2023669_2024332_+	hypothetical protein	Q8W643	Enterobacteria_phage	3.6e-105	89.0
WP_064578859.1\|2024324_2024558_+	hypothetical protein	NA	NA	NA	NA
WP_001422782.1\|2024554_2024779_+	hypothetical protein	NA	NA	NA	NA
WP_064578858.1\|2024775_2025600_+	helix-turn-helix domain-containing protein	Q8HA96	Salmonella_phage	3.0e-85	75.6
WP_000988195.1\|2025610_2026489_+	ATP-binding protein	Q8W641	Enterobacteria_phage	5.4e-141	96.8
WP_161619048.1\|2026485_2027877_+	replicative DNA helicase	Q8W640	Enterobacteria_phage	5.5e-265	99.1
WP_001520742.1\|2027873_2028131_+	hypothetical protein	Q8W639	Enterobacteria_phage	4.4e-35	100.0
WP_015967628.1\|2028130_2028511_+	antitermination protein Q	Q8W638	Enterobacteria_phage	3.4e-68	100.0
WP_000917767.1\|2030048_2030246_+	hypothetical protein	Q9MC00	Enterobacteria_phage	2.1e-29	100.0
WP_146314191.1\|2030382_2031096_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_161619049.1\|2032004_2032430_+	tellurite resistance TerB family protein	Q71TK7	Escherichia_phage	7.2e-59	84.4
WP_000833644.1\|2032426_2032579_+	DUF3927 domain-containing protein	A0A0A0YRI9	Escherichia_phage	2.5e-06	55.6
WP_001294586.1\|2032670_2033063_+\|holin	holin	Q9MBZ5	Enterobacteria_phage	5.7e-50	88.5
WP_161619050.1\|2033052_2033328_+\|holin	phage holin family protein	Q9MBZ4	Enterobacteria_phage	8.9e-42	93.4
WP_161619051.1\|2033330_2033708_+	M15 family metallopeptidase	Q9MBZ3	Enterobacteria_phage	1.6e-62	95.2
WP_097450134.1\|2033778_2034060_+	hypothetical protein	NA	NA	NA	NA
WP_089570301.1\|2034948_2035245_+	hypothetical protein	NA	NA	NA	NA
WP_161619052.1\|2035265_2035616_+	HNH endonuclease	Q8W633	Enterobacteria_phage	1.8e-63	98.3
WP_161619053.1\|2035763_2036246_+\|terminase	phage terminase small subunit P27 family	A0A1B5FPA0	Escherichia_phage	6.7e-85	98.1
WP_161619054.1\|2036245_2038003_+\|terminase	terminase large subunit	A0A1B5FP96	Escherichia_phage	0.0e+00	99.5
WP_032083405.1\|2038014_2038197_+	hypothetical protein	Q8W630	Enterobacteria_phage	2.5e-24	93.3
WP_096098848.1\|2038196_2039438_+\|portal	phage portal protein	Q8W629	Enterobacteria_phage	6.5e-241	99.3
WP_001193625.1\|2039415_2040066_+\|head,protease	HK97 family phage prohead protease	Q8W628	Enterobacteria_phage	6.0e-121	100.0
WP_161619119.1\|2040077_2041304_+\|capsid	phage major capsid protein	Q8W627	Enterobacteria_phage	1.4e-208	92.4
WP_000924705.1\|2041351_2041675_+\|head,tail	phage gp6-like head-tail connector protein	Q8W626	Enterobacteria_phage	9.7e-56	99.1
WP_000702447.1\|2041671_2042088_+\|head	phage head closure protein	Q8HAC9	Salmonella_phage	7.6e-45	68.4
WP_001076770.1\|2042053_2042578_+	hypothetical protein	Q8W625	Enterobacteria_phage	1.6e-95	99.4
WP_161619055.1\|2042574_2043138_+	hypothetical protein	Q8W624	Enterobacteria_phage	1.0e-105	98.4
WP_161619056.1\|2043147_2043321_+	DUF2635 domain-containing protein	Q8SBH3	Shigella_phage	1.5e-15	71.4
WP_021558831.1\|2043304_2044801_+\|tail	phage tail sheath protein	Q8W623	Enterobacteria_phage	3.0e-277	98.8
WP_001062340.1\|2044800_2045157_+	hypothetical protein	Q8W622	Enterobacteria_phage	5.3e-63	99.2
WP_000117144.1\|2045156_2045486_+\|tail	phage tail assembly protein	Q8W621	Enterobacteria_phage	7.8e-53	100.0
WP_161619057.1\|2045570_2047520_+\|tail	phage tail tape measure protein	Q8W620	Enterobacteria_phage	0.0e+00	97.7
2047142:2047160	attR	NA	NA	NA	NA
WP_032083313.1\|2047587_2048070_+	hypothetical protein	NA	NA	NA	NA
WP_161619058.1\|2048116_2049508_+	DNA circularization protein	Q8W619	Enterobacteria_phage	3.2e-249	96.5
WP_063123875.1\|2049504_2050560_+\|plate	baseplate protein	Q8W618	Enterobacteria_phage	1.0e-199	99.1
WP_001013088.1\|2050559_2051093_+\|plate	phage baseplate assembly protein	Q8W617	Enterobacteria_phage	2.4e-96	99.4
WP_057697897.1\|2051098_2051512_+	hypothetical protein	Q8W616	Enterobacteria_phage	8.6e-73	97.8
WP_000785587.1\|2051504_2052587_+\|plate	baseplate J/gp47 family protein	Q8W615	Enterobacteria_phage	2.6e-209	100.0
WP_000380342.1\|2052586_2053177_+	DUF2313 domain-containing protein	Q8W614	Enterobacteria_phage	4.4e-115	99.5
WP_161619059.1\|2053163_2054201_+\|tail	phage tail protein	Q8W613	Enterobacteria_phage	1.4e-156	83.4
WP_097452375.1\|2054215_2054746_+\|tail	phage tail protein	A0A0U2QV64	Escherichia_phage	2.4e-96	99.4
WP_161619060.1\|2054769_2056770_+\|tail	phage tail protein	A0A0U2SH60	Escherichia_phage	2.4e-221	56.8
WP_161619120.1\|2056769_2057333_+	DUF4376 domain-containing protein	A0A0U2QQK4	Escherichia_phage	5.0e-100	96.3
WP_000891610.1\|2057745_2058312_-	hydrolase	NA	NA	NA	NA
WP_001258662.1\|2058621_2060394_+\|tRNA	aspartate--tRNA ligase	NA	NA	NA	NA

DBSCAN-SWA_7

2495550 : 2607552

111

Escherichia_phage(56.14%)

holin,terminase,capsid,head,plate,transposase,integrase,portal,tail,tRNA

attL 2521986:2522002|attR 2606685:2606701

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001373192.1\|2495550_2496759_-\|transposase	IS200/IS605 family element transposase accessory protein TnpB	A0A077SL42	Escherichia_phage	2.9e-209	93.8
WP_001261013.1\|2497289_2497958_-	DUF3313 domain-containing protein	NA	NA	NA	NA
WP_000586733.1\|2498260_2498854_-	tellurite resistance methyltransferase TehB	NA	NA	NA	NA
WP_001296725.1\|2498850_2499843_-	dicarboxylate transporter/tellurite-resistance protein TehA	NA	NA	NA	NA
WP_001234054.1\|2499966_2500947_+	LbetaH domain-containing protein	NA	NA	NA	NA
WP_000140877.1\|2500941_2501478_-	50S ribosomal protein L7/L12-serine acetyltransferase	NA	NA	NA	NA
WP_001296778.1\|2501540_2501765_-	YdcH family protein	NA	NA	NA	NA
WP_000375956.1\|2501904_2503560_-	glucan biosynthesis protein	NA	NA	NA	NA
WP_000013786.1\|2503784_2505128_-	VOC family protein	NA	NA	NA	NA
WP_000414564.1\|2505344_2506268_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_001098551.1\|2506305_2507946_-	methyl-accepting chemotaxis protein Trg	NA	NA	NA	NA
WP_001320773.1\|2508344_2508494_+	type I toxin-antitoxin system toxin HokB	NA	NA	NA	NA
WP_000731833.1\|2508565_2508739_-	periplasmic protein	A0A0R6PKG1	Moraxella_phage	4.4e-07	67.4
WP_001307188.1\|2508983_2509514_-	cytochrome b561	A0A0U2QLA7	Escherichia_phage	3.1e-19	44.9
WP_000048667.1\|2509702_2510704_+	type I glyceraldehyde-3-phosphate dehydrogenase	NA	NA	NA	NA
WP_000115957.1\|2510745_2512185_-	aldehyde dehydrogenase	NA	NA	NA	NA
WP_001027931.1\|2512381_2513182_-	YdcF family protein	NA	NA	NA	NA
WP_000139614.1\|2513453_2517356_-	ATP-dependent RNA helicase HrpA	A0A1V0SIV3	Klosneuvirus	2.2e-53	29.5
WP_000048948.1\|2517556_2518162_+	FMN-dependent NADH-azoreductase	NA	NA	NA	NA
WP_000627376.1\|2518212_2519529_-	phosphatase PAP2/dual specificity phosphatase family protein	NA	NA	NA	NA
WP_000890935.1\|2521290_2522187_-	phosphatidate cytidylyltransferase	NA	NA	NA	NA
2521986:2522002	attL	NA	NA	NA	NA
WP_000177536.1\|2522186_2522792_-	CDP-alcohol phosphatidyltransferase family protein	NA	NA	NA	NA
WP_000097801.1\|2525331_2526192_-	pyridoxine 4-dehydrogenase	NA	NA	NA	NA
WP_001123454.1\|2526422_2527013_-	phenylacetic acid degradation protein PaaY	NA	NA	NA	NA
WP_000039886.1\|2526994_2527945_-	phenylacetic acid degradation operon negative regulatory protein PaaX	NA	NA	NA	NA
WP_000632286.1\|2528045_2529359_-	phenylacetate--CoA ligase	NA	NA	NA	NA
WP_001206190.1\|2529385_2530591_-	3-oxoadipyl-CoA thiolase	NA	NA	NA	NA
WP_000018413.1\|2530590_2531013_-	hydroxyphenylacetyl-CoA thioesterase PaaI	NA	NA	NA	NA
WP_000973371.1\|2531002_2532430_-	3-hydroxyacyl-CoA dehydrogenase PaaC	NA	NA	NA	NA
WP_000969780.1\|2532431_2533220_-	2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA isomerase	NA	NA	NA	NA
WP_001292341.1\|2533219_2533987_-	2,3-dehydroadipyl-CoA hydratase	NA	NA	NA	NA
WP_000206364.1\|2533983_2535054_-	phenylacetate-CoA oxygenase/reductase subunit PaaK	NA	NA	NA	NA
WP_001189197.1\|2535061_2535559_-	phenylacetate degradation protein PaaD	NA	NA	NA	NA
WP_001072837.1\|2535573_2536320_-	phenylacetate-CoA oxygenase subunit PaaC	NA	NA	NA	NA
WP_000073393.1\|2536328_2536616_-	1,2-phenylacetyl-CoA epoxidase subunit B	NA	NA	NA	NA
WP_000191073.1\|2536627_2537557_-	1,2-phenylacetyl-CoA epoxidase subunit A	NA	NA	NA	NA
WP_001186504.1\|2537841_2539887_+	phenylacetic acid degradation bifunctional protein PaaZ	NA	NA	NA	NA
WP_000535440.1\|2540134_2542408_+	primary-amine oxidase	NA	NA	NA	NA
WP_000138608.1\|2542465_2543965_-	aldehyde dehydrogenase family protein	NA	NA	NA	NA
WP_001067519.1\|2544200_2545106_+	transcriptional regulator FeaR	NA	NA	NA	NA
WP_001325798.1\|2545277_2545607_-	YdbL family protein	NA	NA	NA	NA
WP_000698141.1\|2545611_2545797_-	YnbE family lipoprotein	NA	NA	NA	NA
WP_000900909.1\|2545793_2548433_-	YdbH family protein	NA	NA	NA	NA
WP_000762229.1\|2548640_2549630_+	D-lactate dehydrogenase	M1I4S0	Paramecium_bursaria_Chlorella_virus	2.5e-70	44.0
WP_001299385.1\|2549740_2550163_+	heat shock protein HslJ	NA	NA	NA	NA
WP_001295715.1\|2550159_2550426_-	DUF333 domain-containing protein	NA	NA	NA	NA
WP_000628159.1\|2550699_2554224_+	pyruvate:ferredoxin (flavodoxin) oxidoreductase	NA	NA	NA	NA
WP_000837924.1\|2554589_2555723_+	porin OmpN	Q1MVN1	Enterobacteria_phage	8.3e-118	58.8
WP_001082294.1\|2555863_2556298_+	universal stress protein UspF	A0A1W6JNV4	Morganella_phage	1.0e-28	52.8
WP_032221042.1\|2556837_2557401_-	DUF4376 domain-containing protein	A0A0U2QQK4	Escherichia_phage	5.6e-99	95.2
WP_161619066.1\|2557400_2559773_-\|tail	phage tail protein	A0A0U2SH60	Escherichia_phage	3.0e-279	63.7
WP_161619067.1\|2559797_2560886_-	late control protein	R9TNM7	Vibrio_phage	2.5e-31	29.2
WP_001107807.1\|2560876_2561095_-\|tail	phage tail protein	R9TR63	Vibrio_phage	4.9e-11	52.1
WP_000228000.1\|2561069_2561558_-\|tail	phage tail protein	A0A2H4J875	uncultured_Caudovirales_phage	4.0e-13	34.1
WP_161619068.1\|2561560_2563213_-	hypothetical protein	R9TRP8	Vibrio_phage	3.2e-46	33.6
WP_096836030.1\|2563330_2563633_-\|tail	phage tail assembly protein	NA	NA	NA	NA
WP_033813286.1\|2563694_2564213_-\|tail	tail protein	NA	NA	NA	NA
WP_112015624.1\|2564209_2565685_-\|tail	phage tail protein	R9TMQ0	Vibrio_phage	1.9e-74	38.3
WP_096836034.1\|2565740_2566283_-\|tail	phage tail protein	Q8W612	Enterobacteria_phage	1.9e-72	73.2
WP_161619069.1\|2566285_2567542_-\|tail	phage tail protein	Q8W613	Enterobacteria_phage	3.9e-108	80.8
WP_112015622.1\|2567538_2568129_-\|tail	phage tail protein I	A0A193GYD1	Enterobacter_phage	3.6e-24	38.5
WP_097450119.1\|2568121_2569036_-\|plate	baseplate assembly protein	D5LGZ3	Escherichia_phage	1.6e-63	44.6
WP_040091455.1\|2569010_2569367_-\|plate	baseplate assembly protein	V5YTB2	Pseudomonas_phage	2.8e-19	46.8
WP_096934541.1\|2569400_2570024_-\|plate	phage baseplate assembly protein V	F1BUP5	Erwinia_phage	1.1e-10	30.2
WP_096934551.1\|2570007_2570559_-	hypothetical protein	NA	NA	NA	NA
WP_097446582.1\|2570570_2571293_-	hypothetical protein	NA	NA	NA	NA
WP_112015621.1\|2571273_2571675_-	hypothetical protein	NA	NA	NA	NA
WP_096934544.1\|2571677_2572043_-	DNA breaking-rejoining protein	NA	NA	NA	NA
WP_096934545.1\|2572093_2573122_-\|capsid	major capsid protein	C6ZCY2	Enterobacteria_phage	1.3e-109	58.9
WP_000598339.1\|2573191_2573527_-\|head	head decoration protein	A0A2R9YJN3	Escherichia_phage	1.9e-22	55.1
WP_096934546.1\|2573565_2575182_-	S49 family peptidase	A0A0K2FI53	Enterobacteria_phage	2.8e-103	54.5
WP_089553007.1\|2575171_2576695_-\|portal	phage portal protein	E4WL21	Enterobacteria_phage	4.4e-183	63.4
WP_000263126.1\|2576739_2576949_-\|head,tail	head-tail joining protein	K7PM10	Enterobacteria_phage	1.4e-10	49.2
WP_097446584.1\|2578839_2579388_-\|terminase	terminase small subunit	A0A0U2S671	Escherichia_phage	2.9e-68	97.1
WP_097450134.1\|2580982_2581264_-	hypothetical protein	NA	NA	NA	NA
WP_089606971.1\|2581334_2581712_-	M15 family metallopeptidase	Q9MBZ3	Enterobacteria_phage	1.1e-61	93.5
WP_096934530.1\|2581714_2581990_-\|holin	phage holin family protein	Q9MBZ4	Enterobacteria_phage	2.5e-44	97.8
WP_001294583.1\|2581979_2582372_-\|holin	holin	Q9MBZ5	Enterobacteria_phage	5.7e-50	89.2
WP_000823297.1\|2582429_2582855_-	subtilase	NA	NA	NA	NA
WP_112015687.1\|2582922_2583648_-	pertussis toxin-like subunit ArtA	A0A0U2KD26	Escherichia_phage	3.3e-80	66.4
WP_000640111.1\|2584035_2584578_-	DUF1133 family protein	A0A0U2S606	Escherichia_phage	1.6e-74	74.6
WP_000228027.1\|2584574_2584865_-	DUF1364 domain-containing protein	A0A0U2KD41	Escherichia_phage	5.7e-47	88.5
WP_062873745.1\|2584864_2585464_-	DUF1367 family protein	A0A0U2RT94	Escherichia_phage	8.2e-109	94.5
WP_087907235.1\|2586024_2586198_-	type I toxin-antitoxin system Hok family toxin	A0A0U2QV81	Escherichia_phage	2.4e-13	77.8
WP_087907236.1\|2586339_2587224_+	hypothetical protein	NA	NA	NA	NA
WP_136769118.1\|2587211_2587673_+	hypothetical protein	NA	NA	NA	NA
WP_001289353.1\|2587846_2588482_-	ead/Ea22-like family protein	A0A2R2Z315	Escherichia_phage	1.3e-115	100.0
WP_001224672.1\|2588647_2588830_-	hypothetical protein	A0A2R2Z308	Escherichia_phage	2.0e-26	96.7
WP_033812990.1\|2588958_2589270_-	hypothetical protein	A0A222YY67	Escherichia_phage	9.0e-51	82.5
WP_033812989.1\|2589262_2589517_-	hypothetical protein	A0A0U2RK51	Escherichia_phage	7.7e-40	89.3
WP_087907238.1\|2589513_2589936_-	DUF977 family protein	A0A0U2QQN3	Escherichia_phage	2.1e-66	95.0
WP_087907239.1\|2589952_2590723_-	DUF1627 domain-containing protein	A0A0U2SAW4	Escherichia_phage	5.8e-99	77.0
WP_159105019.1\|2590757_2591300_-	replication protein	A0A0U2JGJ0	Escherichia_phage	2.6e-85	98.0
WP_161619070.1\|2591211_2592282_-	DUF1376 domain-containing protein	A0A0U2RT81	Escherichia_phage	1.4e-199	97.5
WP_062873816.1\|2592294_2592717_-	hypothetical protein	A0A0U2RXZ9	Escherichia_phage	6.7e-73	99.3
WP_161619071.1\|2592727_2592976_-	helix-turn-helix domain-containing protein	A0A0U2S629	Escherichia_phage	4.9e-23	64.6
WP_001253182.1\|2593081_2593546_+	helix-turn-helix domain-containing protein	A0A0U2QW76	Escherichia_phage	1.2e-54	69.5
WP_096925985.1\|2593927_2594083_+	DUF1391 domain-containing protein	M4QQ57	Salicola_phage	4.7e-08	55.3
WP_161619072.1\|2594084_2594717_-	hypothetical protein	NA	NA	NA	NA
WP_000560220.1\|2595032_2595254_+	killing protein KilR	A0A0U2RTC4	Escherichia_phage	6.2e-38	100.0
WP_023568504.1\|2595247_2595424_+	bacteriophage protein	A0A0U2SHB5	Escherichia_phage	3.9e-27	100.0
WP_161619073.1\|2595874_2599021_+	exodeoxyribonuclease VIII	A0A0U2I1R6	Escherichia_phage	0.0e+00	99.8
WP_021529594.1\|2599035_2600124_+	hypothetical protein	A0A0U2S5Y9	Escherichia_phage	7.7e-206	100.0
WP_021500490.1\|2600187_2600382_+	type I toxin-antitoxin system endodeoxyribonuclease toxin RalR	A0A0U2QQP4	Escherichia_phage	9.0e-33	100.0
WP_001383994.1\|2600374_2600563_+	DUF1187 family protein	A0A0U2QL97	Escherichia_phage	1.9e-27	100.0
WP_000079604.1\|2600662_2600878_+	excisionase XisR	A0A0U2RY08	Escherichia_phage	1.8e-37	100.0
WP_072017917.1\|2600879_2602115_+\|integrase	site-specific integrase	A0A0U2JGI6	Escherichia_phage	1.5e-242	100.0
WP_001157377.1\|2602166_2603102_+\|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	A0A0U2S5Z2	Escherichia_phage	2.8e-148	100.0
WP_000123745.1\|2603230_2604604_-	ATP-dependent RNA helicase DbpA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	6.6e-53	33.1
WP_000387388.1\|2605081_2606065_-	zinc transporter ZntB	NA	NA	NA	NA
WP_001307164.1\|2606319_2607552_+	diguanylate cyclase DgcM	A0A127AWB9	Bacillus_phage	3.1e-17	39.5
2606685:2606701	attR	NA	NA	NA	NA

DBSCAN-SWA_8

3041677 : 3129479

Salmonella_phage(56.9%)

terminase,capsid,protease,head,lysis,plate,integrase,portal,tail,tRNA

attL 3077530:3077544|attR 3130816:3130830

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000886683.1\|3041677_3042970_-\|tRNA	serine--tRNA ligase	A0A1B1IVT2	uncultured_Mediterranean_phage	1.5e-94	48.2
WP_000067755.1\|3043060_3044404_-	replication-associated recombination protein A	G3MBE0	Bacillus_virus	2.1e-80	40.8
WP_001295343.1\|3044414_3045026_-	outer membrane lipoprotein chaperone LolA	NA	NA	NA	NA
WP_000077063.1\|3045180_3049287_-	DNA translocase FtsK	A0A218M9A2	Mycobacterium_phage	1.2e-86	48.7
WP_000228473.1\|3049421_3049916_-	leucine-responsive transcriptional regulator Lrp	NA	NA	NA	NA
WP_000537418.1\|3050460_3051426_+	thioredoxin-disulfide reductase	A0A2I2L5E1	Orpheovirus	8.5e-63	44.6
WP_001043587.1\|3051548_3053315_+	cysteine/glutathione ABC transporter permease/ATP-binding protein CydD	W8CYL7	Bacillus_phage	4.1e-23	24.3
WP_001202188.1\|3053315_3055037_+	cysteine/glutathione ABC transporter ATP-binding protein/permease CydC	W8CYL7	Bacillus_phage	1.9e-20	25.2
WP_001241678.1\|3055078_3055783_+\|tRNA	leucyl/phenylalanyl-tRNA--protein transferase	NA	NA	NA	NA
WP_001040187.1\|3056067_3056286_+	translation initiation factor IF-1	NA	NA	NA	NA
WP_000934041.1\|3056970_3059247_-\|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	A0A223W0B1	Agrobacterium_phage	1.9e-166	42.5
WP_000520781.1\|3059277_3059598_-\|protease	ATP-dependent Clp protease adapter ClpS	A0A1B1IT64	uncultured_Mediterranean_phage	1.6e-13	44.4
WP_000410785.1\|3059920_3060145_+	cold shock-like protein CspD	A0A2H4N7Y6	Lake_Baikal_phage	2.3e-16	61.2
WP_000188176.1\|3060217_3062164_-	macrolide ABC transporter ATP-binding protein/permease MacB	G9BWD6	Planktothrix_phage	1.1e-37	40.1
WP_000746460.1\|3062160_3063276_-	macrolide transporter subunit MacA	NA	NA	NA	NA
WP_001355621.1\|3063426_3064383_+	DUF535 domain-containing protein	NA	NA	NA	NA
WP_000599806.1\|3064379_3066038_-	ATP-dependent endonuclease	NA	NA	NA	NA
WP_001297311.1\|3066463_3067159_+	aquaporin Z	NA	NA	NA	NA
WP_000491142.1\|3067653_3068553_+	L-lysine exporter LysO	NA	NA	NA	NA
WP_000458817.1\|3068696_3070349_+	hydroxylamine reductase	NA	NA	NA	NA
WP_000178677.1\|3070360_3071329_+	NADH oxidoreductase	NA	NA	NA	NA
WP_161619079.1\|3071461_3073180_+	ubiquinone-dependent pyruvate dehydrogenase	A0A0P0YLY7	Yellowstone_lake_phycodnavirus	4.0e-31	24.1
WP_000566372.1\|3073216_3074218_+	low-specificity L-threonine aldolase	NA	NA	NA	NA
WP_001136554.1\|3074228_3075659_+	SDR family oxidoreductase	NA	NA	NA	NA
WP_001338420.1\|3075757_3076771_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA
WP_097419204.1\|3076767_3077598_-	N-acetylmuramoyl-L-alanine amidase	A0A1B0UZW5	Roseobacter_phage	4.3e-07	30.0
3077530:3077544	attL	NA	NA	NA	NA
WP_001160737.1\|3077594_3077918_-	heavy metal-binding domain-containing protein	NA	NA	NA	NA
WP_001270740.1\|3078043_3078559_+	lipoprotein	NA	NA	NA	NA
WP_000027205.1\|3078776_3079505_+	arginine ABC transporter ATP-binding protein ArtP	G9BWD6	Planktothrix_phage	6.0e-29	36.7
WP_000756569.1\|3079522_3080254_+	arginine ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_001001691.1\|3080260_3080977_+	arginine ABC transporter permease ArtQ	NA	NA	NA	NA
WP_000464491.1\|3080976_3081645_+	arginine ABC transporter permease ArtM	NA	NA	NA	NA
WP_001295905.1\|3081936_3082668_+	arginine ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_001149733.1\|3082842_3083970_-	23S rRNA (uracil(747)-C(5))-methyltransferase RlmC	A0A1X9I6F4	Streptococcus_phage	3.5e-28	27.6
WP_000389260.1\|3084010_3084499_-	YbjO family protein	NA	NA	NA	NA
WP_001061657.1\|3084558_3085404_-	putrescine ABC transporter permease PotI	NA	NA	NA	NA
WP_000105430.1\|3085400_3086354_-	putrescine ABC transporter permease PotH	NA	NA	NA	NA
WP_000996025.1\|3086363_3087497_-	putrescine ABC transporter ATP-binding subunit PotG	G3M9Y6	Bacillus_virus	5.0e-30	34.4
WP_097419205.1\|3087591_3088704_-	spermidine/putrescine ABC transporter substrate-binding protein PotF	NA	NA	NA	NA
WP_000203025.1\|3089055_3089532_-	YbjN domain-containing protein	NA	NA	NA	NA
WP_000684311.1\|3089619_3090522_-	30S ribosomal protein S6--L-glutamate ligase	I3ULC9	Synechococcus_phage	2.6e-37	34.4
WP_000189159.1\|3090582_3091305_-	nitroreductase NfsA	NA	NA	NA	NA
WP_001201554.1\|3091288_3091576_-	DUF1418 family protein	NA	NA	NA	NA
WP_001195240.1\|3091735_3091993_+	glutaredoxin 1	A0A2I7SAE2	Vibrio_phage	8.6e-23	61.9
WP_000681108.1\|3092022_3092400_-	hypothetical protein	NA	NA	NA	NA
WP_001024867.1\|3092669_3094355_+	aspartate:alanine antiporter	NA	NA	NA	NA
WP_000972391.1\|3094590_3094809_-	transcriptional activator Ogr/delta	Q53ZE7	Salmonella_virus	7.5e-20	69.0
WP_001011790.1\|3094899_3096000_-	phage late control D family protein	A0A1S6KZZ5	Salmonella_phage	3.8e-176	88.0
WP_000980383.1\|3095996_3096482_-\|tail	phage tail protein	E5G6Q2	Salmonella_phage	4.8e-67	80.6
WP_161619080.1\|3096478_3099556_-\|tail	phage tail tape measure protein	E5G6Q1	Salmonella_phage	0.0e+00	63.1
WP_000763311.1\|3099548_3099668_-\|tail	GpE family phage tail protein	E5G6Q0	Salmonella_phage	2.8e-13	87.2
WP_001281008.1\|3099682_3099985_-\|tail	phage tail assembly protein	A0A1S6KZZ9	Salmonella_phage	1.6e-39	88.0
WP_001207660.1\|3100039_3100555_-\|tail	phage major tail tube protein	A0A1S6L002	Salmonella_phage	2.1e-89	95.3
WP_000046134.1\|3100564_3101737_-\|tail	phage tail sheath protein	A0A1S6KZY7	Salmonella_phage	7.8e-204	90.0
WP_000905033.1\|3101879_3102446_-	recombinase family protein	A0A0F7LA37	Escherichia_phage	3.8e-87	86.8
WP_071779871.1\|3102476_3102857_+	hypothetical protein	I3PGW0	Xanthomonas_phage	3.0e-08	31.8
WP_000282064.1\|3103009_3103615_-\|tail	tail fiber assembly protein	M1SV83	Escherichia_phage	1.4e-92	84.4
WP_115285318.1\|3103614_3105201_-\|tail	phage tail protein	M1TAS6	Escherichia_phage	1.6e-207	73.1
WP_001086845.1\|3105197_3105803_-\|tail	phage tail protein I	A0A1S6L000	Salmonella_phage	2.0e-110	92.5
WP_000268306.1\|3105795_3106704_-\|plate	baseplate assembly protein	A0A1S6KZY6	Salmonella_phage	3.5e-143	90.4
WP_059331288.1\|3106690_3107050_-\|plate	baseplate assembly protein	A0A1S6KZZ4	Salmonella_phage	1.0e-50	84.9
WP_001440572.1\|3107046_3107625_-\|plate	phage baseplate assembly protein V	A0A1S6KZX7	Salmonella_phage	3.0e-92	85.4
WP_000870373.1\|3107699_3108914_-	hypothetical protein	NA	NA	NA	NA
WP_001183830.1\|3108888_3109272_-	hypothetical protein	NA	NA	NA	NA
WP_000829112.1\|3109289_3109739_-	phage virion morphogenesis protein	A0A1S6L001	Salmonella_phage	1.1e-52	76.4
WP_001039948.1\|3109731_3110163_-\|tail	phage tail protein	E5G6N3	Salmonella_phage	2.6e-72	93.7
WP_000196201.1\|3110258_3110687_-\|lysis	LysB family phage lysis regulatory protein	E5G6N2	Salmonella_phage	2.8e-58	88.7
WP_001069904.1\|3110683_3111199_-	lysozyme	E5G6N1	Salmonella_phage	7.4e-90	93.0
WP_000171568.1\|3111179_3111395_-	hypothetical protein	E5G6N0	Salmonella_phage	1.8e-26	80.3
WP_000868175.1\|3111398_3111602_-\|tail	tail protein X	E5G6M9	Salmonella_phage	1.4e-31	92.5
WP_000673522.1\|3111601_3112066_-\|head	head completion/stabilization protein	A0A1S6KZW8	Salmonella_phage	2.4e-76	89.0
WP_000059183.1\|3112161_3112812_-\|terminase	terminase endonuclease subunit	E5G6M7	Salmonella_phage	6.6e-112	96.3
WP_040082407.1\|3112815_3113874_-\|capsid	phage major capsid protein, P2 family	E5G6M6	Salmonella_phage	2.2e-181	93.4
WP_000216242.1\|3113890_3114724_-\|capsid	GPO family capsid scaffolding protein	A0A1S6KZW9	Salmonella_phage	6.3e-123	90.6
WP_001098431.1\|3114866_3116633_+\|terminase	terminase ATPase subunit family protein	A0A1S6KZW3	Salmonella_phage	0.0e+00	99.7
WP_161619081.1\|3116632_3117664_+\|portal	phage portal protein	E5G6M3	Salmonella_phage	5.0e-170	87.3
WP_000553634.1\|3117689_3118652_-	DNA-processing protein DprA	S6BFL3	Thermus_phage	5.2e-20	30.2
WP_016245841.1\|3118656_3119226_-	phosphoribosyltransferase	NA	NA	NA	NA
WP_001217568.1\|3120299_3120533_-	DinI family protein	E5G6M1	Salmonella_phage	2.3e-35	98.7
WP_001154434.1\|3120543_3120732_-	hypothetical protein	E5G6M0	Salmonella_phage	5.5e-27	98.4
WP_000017528.1\|3120884_3123299_-	replication endonuclease	E5G6L9	Salmonella_phage	0.0e+00	98.0
WP_000104182.1\|3123295_3124153_-	DNA adenine methylase	E5G6L8	Salmonella_phage	1.7e-160	96.8
WP_000752619.1\|3124149_3124377_-	TraR/DksA family transcriptional regulator	E5G6L7	Salmonella_phage	3.5e-36	98.7
WP_001244224.1\|3124376_3124610_-	DUF2732 family protein	E5G6L6	Salmonella_phage	1.9e-32	97.4
WP_000963473.1\|3124677_3125019_-	DUF5347 domain-containing protein	E5G6L5	Salmonella_phage	4.6e-56	99.1
WP_000956181.1\|3124982_3125183_-	DUF2724 domain-containing protein	E5G6L4	Salmonella_phage	1.6e-32	97.0
WP_000460893.1\|3125190_3125700_-	phage regulatory CII family protein	E5G6L3	Salmonella_phage	5.8e-87	98.8
WP_000188448.1\|3125732_3125954_-	hypothetical protein	NA	NA	NA	NA
WP_000107902.1\|3126049_3126646_+	phage repressor protein CI	A0A1S6KZZ7	Salmonella_phage	1.1e-39	42.4
WP_001084068.1\|3126666_3128343_+	DUF4041 domain-containing protein	A0A142LP25	Marinitoga_camini_virus	5.7e-83	67.0
WP_000290937.1\|3128426_3129479_+\|integrase	tyrosine-type recombinase/integrase	A0A218M4I3	Erwinia_phage	3.6e-107	57.3
3130816:3130830	attR	NA	NA	NA	NA

DBSCAN-SWA_9

3160109 : 3255205

106

Enterobacteria_phage(43.75%)

terminase,capsid,head,transposase,integrase,portal,tail,lysis

attL 3186388:3186423|attR 3256639:3256674

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000399648.1\|3160109_3161090_-\|transposase	IS110-like element IS621 family transposase	NA	NA	NA	NA
WP_000961458.1\|3161368_3162961_-	ABC-F family ATPase	A0A2K9L0W2	Tupanvirus	6.9e-62	28.7
WP_001056384.1\|3163179_3164100_+	L,D-transpeptidase	NA	NA	NA	NA
WP_000056415.1\|3164158_3165277_-	anion transporter	NA	NA	NA	NA
WP_000091016.1\|3165273_3165741_-	manganese-binding transcriptional regulator MntR	NA	NA	NA	NA
WP_001001761.1\|3165926_3166055_+	manganase accumulation protein MntS	NA	NA	NA	NA
WP_001054662.1\|3166326_3167910_+	phosphoethanolamine transferase	NA	NA	NA	NA
WP_001295296.1\|3167958_3168474_-	outer membrane protein OmpX	H6WZM8	Escherichia_phage	1.1e-16	33.8
WP_120795379.1\|3168526_3168592_-	protein YliM	NA	NA	NA	NA
WP_001315365.1\|3168826_3169714_+	threonine/homoserine exporter RhtA	NA	NA	NA	NA
WP_000100800.1\|3170012_3170516_+	DNA starvation/stationary phase protection protein Dps	A0A222YYG6	Streptomyces_phage	4.9e-06	29.0
WP_000843866.1\|3170919_3171666_+	glutamine ABC transporter substrate-binding protein GlnH	NA	NA	NA	NA
WP_001159065.1\|3171804_3172464_+	glutamine ABC transporter permease GlnP	NA	NA	NA	NA
WP_000569080.1\|3172460_3173183_+	glutamine ABC transporter ATP-binding protein GlnQ	G9BWD6	Planktothrix_phage	2.5e-35	41.8
WP_001267250.1\|3173299_3175522_+	mechanosensitive channel protein	NA	NA	NA	NA
WP_001275941.1\|3175518_3176445_-	23S rRNA (adenine(1618)-N(6))-methyltransferase RlmF	NA	NA	NA	NA
WP_000710619.1\|3176720_3176981_+	DUF1471 domain-containing protein	A0A1B2ICL8	Erwinia_phage	1.6e-05	51.0
WP_000430045.1\|3177244_3179527_+	catecholate siderophore receptor Fiu	NA	NA	NA	NA
WP_000990177.1\|3179568_3180246_+	PKHD-type hydroxylase YbiX	Q5GQB0	Synechococcus_phage	1.2e-18	30.1
WP_000146369.1\|3180319_3180586_+	C4-type zinc finger protein YbiI	E5G6L7	Salmonella_phage	6.9e-07	45.6
WP_000849301.1\|3180850_3181111_+	DUF1471 domain-containing protein	NA	NA	NA	NA
WP_000443512.1\|3181338_3182424_-	malate/lactate/ureidoglycolate dehydrogenase	NA	NA	NA	NA
WP_000386551.1\|3182564_3183527_-	DNA-binding protein YbiB	NA	NA	NA	NA
WP_001307069.1\|3183554_3185705_-	ATP-dependent DNA helicase DinG	A0A127AW80	Bacillus_phage	5.7e-43	26.3
WP_001145128.1\|3185824_3186307_+	N-glycosidase YbiA	A0A0H3TLU0	Faustovirus	1.5e-36	52.7
3186388:3186423	attL	NA	NA	NA	NA
WP_000007102.1\|3186538_3187903_-	ATP-dependent RNA helicase RhlE	A0A1V0SBR7	Catovirus	1.5e-52	31.8
WP_001315358.1\|3188131_3188803_+	DNA-binding transcriptional regulator CecR	NA	NA	NA	NA
WP_000976400.1\|3188802_3189801_+	secretion protein HlyD	NA	NA	NA	NA
WP_000996092.1\|3189793_3191530_+	ABC transporter ATP-binding protein	W6JKT0	Anomala_cuprea_entomopoxvirus	2.3e-18	29.8
WP_000070131.1\|3191522_3192656_+	ABC transporter permease	NA	NA	NA	NA
WP_000469031.1\|3192666_3193773_+	ABC transporter permease	NA	NA	NA	NA
WP_000871982.1\|3193734_3194145_-	hypothetical protein	NA	NA	NA	NA
WP_001113351.1\|3194277_3195039_+	endonuclease/exonuclease/phosphatase family protein	NA	NA	NA	NA
WP_000650337.1\|3195035_3196277_+	cardiolipin synthase ClsB	NA	NA	NA	NA
WP_000045448.1\|3196276_3197233_+	UPF0104 family protein	NA	NA	NA	NA
WP_001088641.1\|3197268_3197982_-	Bax inhibitor-1/YccA family protein	NA	NA	NA	NA
WP_001331162.1\|3198051_3198699_-	membrane protein	NA	NA	NA	NA
WP_000373624.1\|3198900_3199605_-	Bax inhibitor-1/YccA family protein	NA	NA	NA	NA
WP_000852287.1\|3199741_3200194_-	molybdopterin synthase catalytic subunit MoaE	NA	NA	NA	NA
WP_000598619.1\|3200195_3200441_-	molybdopterin synthase sulfur carrier subunit	NA	NA	NA	NA
WP_000080885.1\|3200433_3200919_-	cyclic pyranopterin monophosphate synthase MoaC	NA	NA	NA	NA
WP_000084639.1\|3200921_3201434_-	molybdenum cofactor biosynthesis protein B	NA	NA	NA	NA
WP_001315357.1\|3201455_3202445_-	GTP 3',8-cyclase MoaA	NA	NA	NA	NA
WP_001295302.1\|3202841_3203750_+	uridine diphosphate-N-acetylglucosamine-binding protein YvcK	A1IMD5	Streptococcus_phage	1.4e-27	31.1
WP_000042533.1\|3203941_3205963_-	excinuclease ABC subunit B	NA	NA	NA	NA
WP_000044882.1\|3206541_3207219_-	ATP-dependent dethiobiotin synthetase BioD	NA	NA	NA	NA
WP_000246805.1\|3207211_3207967_-	malonyl-ACP O-methyltransferase BioC	NA	NA	NA	NA
WP_000118822.1\|3207953_3209108_-	8-amino-7-oxononanoate synthase	NA	NA	NA	NA
WP_000951213.1\|3209104_3210145_-	biotin synthase BioB	NA	NA	NA	NA
WP_001367048.1\|3210231_3211521_+	adenosylmethionine--8-amino-7-oxononanoate transaminase	A0A1V0SKB7	Klosneuvirus	1.0e-18	29.0
WP_000767389.1\|3211579_3212056_+	kinase inhibitor	NA	NA	NA	NA
WP_001468417.1\|3212801_3214133_+	GGDEF domain-containing protein	A0A127AWB9	Bacillus_phage	2.5e-20	37.1
WP_001171282.1\|3214637_3215600_+	hypothetical protein	A0A0A7NV63	Enterobacteria_phage	4.0e-174	91.1
WP_001541481.1\|3215603_3216131_+\|tail	tail fiber assembly protein	A0A077SK10	Escherichia_phage	1.2e-92	97.7
WP_000972143.1\|3216159_3216693_-\|tail	tail fiber assembly protein	C9DGR0	Escherichia_phage	6.4e-97	99.4
WP_077763067.1\|3216695_3219533_-\|tail	phage tail protein	Q1MVL8	Enterobacteria_phage	8.5e-204	60.5
WP_001233093.1\|3219597_3220197_-	Ail/Lom family outer membrane beta-barrel protein	A5LH44	Enterobacteria_phage	2.2e-109	98.0
WP_161619082.1\|3220267_3223765_-	host specificity protein J	A0A291AWT4	Escherichia_phage	0.0e+00	97.7
WP_000090873.1\|3223825_3224458_-\|tail	tail assembly protein	A0A2R9YJH6	Escherichia_phage	6.5e-96	99.0
WP_004009102.1\|3224394_3225138_-\|tail	phage tail protein	K7PLW1	Enterobacteria_phage	4.5e-149	97.6
WP_001152639.1\|3225143_3225842_-\|tail	phage minor tail protein L	A0A0K2FJ01	Enterobacteria_phage	2.3e-134	100.0
WP_000847379.1\|3225841_3226171_-\|tail	phage tail protein	A0A0K2FIE9	Enterobacteria_phage	9.6e-59	100.0
WP_134240115.1\|3226167_3228729_-\|tail	phage tail tape measure protein	A0A0K2FI43	Enterobacteria_phage	0.0e+00	92.6
WP_000459457.1\|3228721_3229156_-\|tail	phage tail assembly protein T	A0A0K2FJB3	Enterobacteria_phage	6.9e-65	100.0
WP_161619083.1\|3229137_3229560_-\|tail	phage minor tail protein G	A0A0K2FIQ8	Enterobacteria_phage	2.4e-70	95.7
WP_161619084.1\|3229575_3230316_-\|tail	phage tail protein	A0A0K2FJ05	Enterobacteria_phage	1.4e-129	97.6
WP_000683111.1\|3230323_3230719_-\|tail	tail protein	A0A0K2FIF4	Enterobacteria_phage	5.0e-70	99.2
WP_048943351.1\|3230715_3231294_-\|tail	phage tail protein	A0A2R9YJK4	Escherichia_phage	5.9e-80	97.9
WP_000752996.1\|3231305_3231659_-\|tail	tail attachment protein	A0A2R9YJJ5	Escherichia_phage	1.5e-62	99.1
WP_048943350.1\|3231670_3232066_-	DNA-packaging protein FI	A0A2R9YJP4	Escherichia_phage	2.4e-56	93.2
WP_161619085.1\|3232107_3233133_-\|capsid	major capsid protein	C6ZCY2	Enterobacteria_phage	1.5e-187	97.4
WP_001358225.1\|3233188_3233521_-\|head	head decoration protein	A0A2R9YJN3	Escherichia_phage	2.5e-54	98.2
WP_001710055.1\|3233530_3234850_-	S49 family peptidase	A0A2I6TC87	Escherichia_phage	4.0e-233	98.4
WP_001329116.1\|3234830_3236432_-\|portal	phage portal protein	A0A0K2FJC0	Enterobacteria_phage	2.2e-310	99.4
WP_000198149.1\|3236428_3236635_-\|head,tail	Lambda prophage-derived head-to-tail joining protein W	A0A2R9YJL2	Escherichia_phage	5.8e-30	100.0
WP_161619086.1\|3236631_3238392_-\|terminase	phage terminase large subunit family protein	A0A0K2FJ14	Enterobacteria_phage	0.0e+00	99.1
WP_000255944.1\|3238450_3239473_+\|transposase	IS21-like element IS100 family transposase	A0A2L1IVA1	Escherichia_phage	1.9e-201	100.0
WP_001323403.1\|3239472_3240252_+	AAA family ATPase	A0A2L1IVB6	Escherichia_phage	1.5e-139	100.0
WP_161619087.1\|3240261_3240516_-\|terminase	terminase	A0A0K2FJ14	Enterobacteria_phage	1.0e-31	100.0
WP_000453611.1\|3240490_3241036_-	DNA-packaging protein	A0A0K2FIG2	Enterobacteria_phage	2.3e-94	98.3
WP_001663509.1\|3241424_3241658_+	YlcI/YnfO family protein	A0A0K2FIR8	Escherichia_phage	2.5e-21	96.3
WP_032217515.1\|3241714_3242125_+	DUF1398 domain-containing protein	C6ZCX4	Enterobacteria_phage	8.3e-52	75.6
WP_001139678.1\|3242476_3242629_-	hypothetical protein	K7PKL2	Enterobacteria_phage	3.1e-20	96.0
WP_001228702.1\|3242657_3242864_-	hypothetical protein	H6WRZ6	Salmonella_phage	5.3e-31	98.5
WP_001135261.1\|3243080_3243578_-	lysozyme	A0A1B5FP97	Escherichia_phage	4.2e-90	97.6
WP_000839582.1\|3243577_3243793_-\|lysis	phage lysis protein EssD	A5LH82	Enterobacteria_phage	1.2e-33	98.6
WP_001146308.1\|3243980_3244712_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_000592546.1\|3245063_3246023_-	DUF523 and DUF1722 domain-containing protein	NA	NA	NA	NA
WP_000780581.1\|3246215_3246740_+	lipocalin family protein	A0A1W6JNX6	Morganella_phage	1.1e-48	54.1
WP_001204777.1\|3246895_3247273_-	antitermination protein	Q777W5	Enterobacteria_phage	7.3e-55	84.2
WP_000971055.1\|3247358_3247499_-	YlcG family protein	K7PHH3	Enterobacteria_phage	1.1e-08	69.8
WP_001540841.1\|3247495_3247858_-	crossover junction endodeoxyribonuclease RusA	K7PM48	Enterobacteria_phage	9.5e-60	95.7
WP_000950954.1\|3247877_3248072_-	protein ninF	NA	NA	NA	NA
WP_000386643.1\|3248064_3248406_-	DUF2591 domain-containing protein	Q76H72	Enterobacteria_phage	1.6e-61	96.5
WP_001254223.1\|3248408_3248585_-	NinE family protein	K7PHE6	Enterobacteria_phage	1.4e-27	98.3
WP_161619088.1\|3248581_3249109_-	phage N-6-adenine-methyltransferase	A0A1I9LJP9	Stx_converting_phage	4.7e-100	99.4
WP_000736903.1\|3249105_3249546_-	recombination protein NinB	A0A220NRM1	Escherichia_phage	7.0e-81	100.0
WP_000145931.1\|3249619_3249910_-	protein ren	A0A1I9LJP5	Stx_converting_phage	9.6e-47	100.0
WP_000788869.1\|3249906_3250608_-	Replication protein P	A0A0P0ZD31	Stx2-converting_phage	1.3e-129	99.6
WP_161619089.1\|3250604_3251504_-	replication protein	M1FN81	Enterobacteria_phage	1.4e-173	99.3
WP_001177650.1\|3251538_3251817_-	transcriptional regulator	K7P7A2	Enterobacteria_phage	1.6e-43	100.0
WP_094283415.1\|3252013_3253160_+\|transposase	IS3 family transposase	U5P429	Shigella_phage	4.9e-158	98.9
WP_000762731.1\|3253219_3253648_+	DUF2513 domain-containing protein	NA	NA	NA	NA
WP_000545741.1\|3253731_3253899_+	hypothetical protein	A0A0K2FJ46	Enterobacteria_phage	4.9e-27	98.2
WP_001303849.1\|3253938_3254157_+	excisionase	Q77WA4	Escherichia_phage	3.7e-35	100.0
WP_001540845.1\|3254134_3255205_+\|integrase	tyrosine-type recombinase/integrase	Q9MCR4	Enterobacteria_phage	9.6e-201	99.4
3256639:3256674	attR	NA	NA	NA	NA

DBSCAN-SWA_10

3480064 : 3526616

Enterobacteria_phage(58.49%)

terminase,capsid,protease,head,integrase,portal,tail,lysis

attL 3479595:3479641|attR 3526630:3526676

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
3479595:3479641	attL	NA	NA	NA	NA
WP_001201810.1\|3480064_3481018_+\|protease	omptin family outer membrane protease OmpT	NA	NA	NA	NA
WP_000386784.1\|3481267_3482017_-	AraC family transcriptional regulator	NA	NA	NA	NA
WP_000239881.1\|3482879_3483548_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_134254079.1\|3483602_3484187_-\|tail	tail fiber assembly protein	K7PMH7	Enterobacteria_phage	1.0e-103	94.8
WP_161619090.1\|3484186_3487258_-\|tail	phage tail protein	U5N099	Enterobacteria_phage	1.9e-68	82.1
WP_001230279.1\|3487322_3487922_-	Ail/Lom family outer membrane beta-barrel protein	A0A291AWV3	Escherichia_phage	1.3e-109	98.0
WP_161619091.1\|3487992_3491406_-	host specificity protein J	K7PKJ2	Enterobacteria_phage	0.0e+00	97.4
WP_000090873.1\|3491466_3492099_-\|tail	tail assembly protein	A0A2R9YJH6	Escherichia_phage	6.5e-96	99.0
WP_004009102.1\|3492035_3492779_-\|tail	phage tail protein	K7PLW1	Enterobacteria_phage	4.5e-149	97.6
WP_001152639.1\|3492784_3493483_-\|tail	phage minor tail protein L	A0A0K2FJ01	Enterobacteria_phage	2.3e-134	100.0
WP_000847379.1\|3493482_3493812_-\|tail	phage tail protein	A0A0K2FIE9	Enterobacteria_phage	9.6e-59	100.0
WP_134240115.1\|3493808_3496370_-\|tail	phage tail tape measure protein	A0A0K2FI43	Enterobacteria_phage	0.0e+00	92.6
WP_000459457.1\|3496362_3496797_-\|tail	phage tail assembly protein T	A0A0K2FJB3	Enterobacteria_phage	6.9e-65	100.0
WP_161619083.1\|3496778_3497201_-\|tail	phage minor tail protein G	A0A0K2FIQ8	Enterobacteria_phage	2.4e-70	95.7
WP_048943399.1\|3497216_3497957_-\|tail	phage tail protein	A0A0K2FJ05	Enterobacteria_phage	6.1e-130	98.0
WP_000683111.1\|3497964_3498360_-\|tail	tail protein	A0A0K2FIF4	Enterobacteria_phage	5.0e-70	99.2
WP_048943351.1\|3498356_3498935_-\|tail	phage tail protein	A0A2R9YJK4	Escherichia_phage	5.9e-80	97.9
WP_000752996.1\|3498946_3499300_-\|tail	tail attachment protein	A0A2R9YJJ5	Escherichia_phage	1.5e-62	99.1
WP_048943350.1\|3499311_3499707_-	DNA-packaging protein FI	A0A2R9YJP4	Escherichia_phage	2.4e-56	93.2
WP_048943349.1\|3499748_3500774_-\|capsid	major capsid protein	C6ZCY2	Enterobacteria_phage	9.0e-188	97.4
WP_001338090.1\|3500829_3501162_-\|head	head decoration protein	A0A2R9YJN3	Escherichia_phage	6.5e-55	99.1
WP_048943348.1\|3501171_3502491_-	S49 family peptidase	A0A2I6TC87	Escherichia_phage	3.8e-231	97.9
WP_032358757.1\|3502471_3504073_-\|portal	phage portal protein	A0A0K2FJC0	Enterobacteria_phage	1.1e-309	99.2
WP_000198149.1\|3504069_3504276_-\|head,tail	Lambda prophage-derived head-to-tail joining protein W	A0A2R9YJL2	Escherichia_phage	5.8e-30	100.0
WP_161619092.1\|3504272_3506198_-\|terminase	phage terminase large subunit family protein	A0A0K2FJ14	Enterobacteria_phage	0.0e+00	99.4
WP_000453611.1\|3506172_3506718_-	DNA-packaging protein	A0A0K2FIG2	Enterobacteria_phage	2.3e-94	98.3
WP_001663509.1\|3507106_3507340_+	YlcI/YnfO family protein	A0A0K2FIR8	Escherichia_phage	2.5e-21	96.3
WP_000079508.1\|3507396_3507807_+	DUF1398 domain-containing protein	C6ZCX4	Enterobacteria_phage	1.3e-52	76.3
WP_001139678.1\|3508158_3508311_-	hypothetical protein	K7PKL2	Enterobacteria_phage	3.1e-20	96.0
WP_001228702.1\|3508339_3508546_-	hypothetical protein	H6WRZ6	Salmonella_phage	5.3e-31	98.5
WP_032267560.1\|3508762_3509260_-	lysozyme	M1FJA0	Enterobacteria_phage	1.2e-89	97.0
WP_000839596.1\|3509259_3509475_-\|lysis	phage lysis protein EssD	A5LH82	Enterobacteria_phage	9.0e-34	100.0
WP_000737266.1\|3510048_3511146_+	porin	Q1MVN1	Enterobacteria_phage	2.2e-155	76.5
WP_001204780.1\|3511335_3511719_-	antitermination protein QuuD	A0A088CD47	Shigella_phage	4.0e-56	84.2
WP_044687701.1\|3511837_3512200_-	RusA family crossover junction endodeoxyribonuclease	K7PM48	Enterobacteria_phage	7.3e-60	95.7
WP_000774486.1\|3512196_3512487_-	DUF1364 domain-containing protein	K7PGZ6	Enterobacteria_phage	3.3e-47	93.8
WP_000224914.1\|3512479_3512650_-	hypothetical protein	K7P7K0	Enterobacteria_phage	2.4e-13	69.8
WP_001356995.1\|3512649_3513105_-	DNA base-flipping protein YbcN	I6PD71	Cronobacter_phage	3.7e-61	67.5
WP_001303586.1\|3513101_3513203_-	hypothetical protein	NA	NA	NA	NA
WP_000881075.1\|3513319_3514117_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_001445652.1\|3514126_3514678_-	Raf kinase inhibitor-like protein YbcL	NA	NA	NA	NA
WP_001356996.1\|3515142_3516669_-	recombinase family protein	Q3HQV4	Burkholderia_phage	7.9e-31	28.0
WP_001299444.1\|3516726_3516876_-	hypothetical protein	NA	NA	NA	NA
WP_001070442.1\|3516923_3517256_-	SMR family multidrug efflux protein EmrE	NA	NA	NA	NA
WP_000145915.1\|3517323_3517626_-	protein ren	A0A0N6WES4	Escherichia_phage	1.1e-42	95.7
WP_000788815.1\|3517622_3518324_-	hypothetical protein	M1FJ72	Enterobacteria_phage	2.4e-128	98.7
WP_001551200.1\|3518320_3519250_-	replication protein	A0A0M5M7Y1	Salmonella_phage	8.0e-111	64.1
WP_001182903.1\|3519336_3519876_-	hypothetical protein	M9NZI6	Enterobacteria_phage	1.2e-61	66.1
WP_001067458.1\|3519944_3520175_-	helix-turn-helix domain-containing protein	A0A2H4FNF3	Salmonella_phage	1.5e-21	68.0
WP_000259990.1\|3520213_3520969_+	helix-turn-helix transcriptional regulator	Q76H56	Enterobacteria_phage	1.4e-92	75.0
WP_000233576.1\|3521564_3521771_+	phage encoded cell division inhibitor protein	K7P6H3	Enterobacteria_phage	3.2e-28	85.3
WP_000995433.1\|3521846_3522143_+	host-nuclease inhibitor protein Gam	A0A1I9LJN1	Stx_converting_phage	6.2e-49	99.0
WP_000100847.1\|3522148_3522934_+	phage recombination protein Bet	A0A1I9LJN0	Stx_converting_phage	6.3e-149	100.0
WP_000186833.1\|3522930_3523611_+	YqaJ viral recombinase family protein	B6DZ61	Enterobacteria_phage	5.1e-131	98.2
WP_000682294.1\|3523607_3523769_+	DUF1317 family protein	A0A0N7CHV0	Escherichia_phage	7.7e-22	96.0
WP_001356999.1\|3523761_3524319_+	phage N-6-adenine-methyltransferase	E5AGF8	Erwinia_phage	2.0e-61	62.3
WP_077248689.1\|3524329_3524611_+	cell division protein ZapA	A0A0P0ZE02	Stx2-converting_phage	2.1e-46	97.8
WP_000763390.1\|3524709_3524928_+	TraR/DksA family transcriptional regulator	M1FQT7	Enterobacteria_phage	4.9e-35	98.6
WP_000488407.1\|3524975_3525254_+	DUF4222 domain-containing protein	M1FPC8	Enterobacteria_phage	4.9e-48	97.8
WP_000446905.1\|3525225_3525597_+	helix-turn-helix domain-containing protein	M1FJ59	Enterobacteria_phage	2.1e-46	81.0
WP_001299447.1\|3525452_3526616_+\|integrase	site-specific integrase	A0A088CD23	Shigella_phage	3.4e-199	86.3
3526630:3526676	attR	NA	NA	NA	NA

DBSCAN-SWA_11

3759920 : 3834655

Shigella_phage(50.0%)

holin,terminase,capsid,protease,head,plate,transposase,integrase,portal,tail

attL 3790021:3790067|attR 3830753:3830799

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000131044.1\|3759920_3761954_-\|holin	choline BCCT transporter BetT	A0A2I7QNT1	Vibrio_phage	3.4e-21	27.4
WP_001295527.1\|3762082_3762670_+	transcriptional regulator BetI	NA	NA	NA	NA
WP_000089077.1\|3762683_3764156_+	betaine-aldehyde dehydrogenase	NA	NA	NA	NA
WP_001159102.1\|3764169_3765840_+\|holin	choline dehydrogenase	A0A1V0S9M4	Catovirus	4.7e-61	31.2
WP_001295805.1\|3766914_3767478_+\|integrase	tyrosine-type recombinase/integrase	A0A2L1IV36	Escherichia_phage	6.0e-53	53.3
WP_001315275.1\|3767807_3768602_+	LuxR family transcriptional regulator	NA	NA	NA	NA
WP_001406334.1\|3768755_3769517_+	hypothetical protein	NA	NA	NA	NA
WP_071593451.1\|3770662_3771856_+	autotransporter outer membrane beta-barrel domain-containing protein	NA	NA	NA	NA
WP_001209088.1\|3772039_3772705_+	membrane protein	NA	NA	NA	NA
WP_001315273.1\|3772950_3773646_-	lactate utilization protein C	NA	NA	NA	NA
WP_000023914.1\|3773638_3775066_-	iron-sulfur cluster-binding protein	NA	NA	NA	NA
WP_001102101.1\|3775076_3775796_-	(Fe-S)-binding protein	NA	NA	NA	NA
WP_000339593.1\|3776324_3777179_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_001046293.1\|3777404_3778730_+	pyridine nucleotide-disulfide oxidoreductase	A0A2K5B2C5	Erysipelothrix_phage	8.5e-114	47.8
WP_000474077.1\|3778838_3779075_+	DUF1471 domain-containing protein	NA	NA	NA	NA
WP_001299021.1\|3779086_3779680_+	reactive chlorine species resistance protein RclC	NA	NA	NA	NA
WP_001299025.1\|3779839_3780709_-	aldo/keto reductase	A0A2H4PQR8	Staphylococcus_phage	9.3e-53	41.7
WP_001315271.1\|3780957_3781815_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_000092603.1\|3781936_3786190_-	intimin-like adhesin FdeC	NA	NA	NA	NA
WP_000662258.1\|3787305_3787407_+	hypothetical protein	NA	NA	NA	NA
WP_000803999.1\|3787769_3788033_+	type B 50S ribosomal protein L31	NA	NA	NA	NA
WP_000866436.1\|3788032_3788173_+	50S ribosomal protein L36	NA	NA	NA	NA
WP_001147277.1\|3788207_3788435_-	hypothetical protein	NA	NA	NA	NA
WP_094283415.1\|3788648_3789795_+\|transposase	IS3 family transposase	U5P429	Shigella_phage	4.9e-158	98.9
3790021:3790067	attL	NA	NA	NA	NA
WP_126677963.1\|3790821_3791565_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_000355484.1\|3793743_3794517_+	hypothetical protein	G9IA57	Pseudomonas_phage	2.4e-36	38.5
WP_000905124.1\|3794577_3795132_-	site-specific DNA recombinase	A0A0F7LA37	Escherichia_phage	2.8e-87	87.8
WP_161619121.1\|3795161_3795548_+\|tail	phage tail protein	NA	NA	NA	NA
WP_021576032.1\|3795549_3795987_+\|tail	tail fiber assembly protein	A0A0F7LDZ0	Escherichia_phage	5.4e-49	69.2
WP_001676479.1\|3795958_3796561_-\|tail	tail fiber assembly protein	M1SV83	Escherichia_phage	1.9e-97	88.0
WP_000554706.1\|3796560_3797331_-\|tail	tail fiber protein	U5P0I1	Shigella_phage	2.7e-51	94.4
WP_000383550.1\|3797334_3797919_-	YmfQ family protein	O22003	Shigella_phage	7.8e-112	98.5
WP_096934567.1\|3797909_3798968_-\|plate	baseplate J/gp47 family protein	U5P424	Shigella_phage	1.5e-198	98.0
WP_000424732.1\|3798954_3799380_-	hypothetical protein	U5P0R9	Shigella_phage	2.3e-81	100.0
WP_001259088.1\|3799379_3799928_-\|plate	phage baseplate assembly protein	U5P081	Shigella_phage	3.3e-96	98.4
WP_126677961.1\|3799927_3801007_-\|plate	baseplate protein	Q8SBG7	Shigella_phage	3.4e-206	99.4
WP_053901023.1\|3801003_3802332_-	DNA circularization protein	Q8SBG8	Shigella_phage	6.7e-244	98.0
WP_000679479.1\|3802393_3802924_-	hypothetical protein	NA	NA	NA	NA
WP_001557407.1\|3803015_3804848_-\|tail	phage tail tape measure protein	S5FM63	Shigella_phage	1.7e-301	97.9
WP_000661047.1\|3804989_3805259_-\|tail	phage tail assembly protein	S5FNR3	Shigella_phage	3.5e-43	100.0
WP_000090998.1\|3805258_3805615_-	hypothetical protein	U5P076	Shigella_phage	5.3e-63	100.0
WP_126677959.1\|3805614_3807111_-\|tail	phage tail protein	M1FN90	Enterobacteria_phage	2.4e-274	99.6
WP_000497751.1\|3807094_3807265_-	DUF2635 domain-containing protein	Q8SBH3	Shigella_phage	9.3e-26	100.0
WP_126677957.1\|3807273_3807834_-	hypothetical protein	M1FQV7	Enterobacteria_phage	4.0e-105	98.9
WP_000213502.1\|3807830_3808337_-	hypothetical protein	M1FPE2	Enterobacteria_phage	1.7e-91	100.0
WP_000702402.1\|3808311_3808722_-\|head	phage head closure protein	M1FJ87	Enterobacteria_phage	9.1e-75	98.5
WP_000927711.1\|3808718_3809042_-\|head,tail	phage gp6-like head-tail connector protein	U5P072	Shigella_phage	1.1e-56	99.1
WP_057081021.1\|3809044_3809245_-	hypothetical protein	S5FNU1	Shigella_phage	2.2e-26	98.5
WP_126677955.1\|3809295_3810501_-\|capsid	phage major capsid protein	M1FPN2	Enterobacteria_phage	2.0e-223	99.5
WP_001442257.1\|3810515_3811166_-\|head,protease	HK97 family phage prohead protease	U5P4H2	Shigella_phage	1.6e-118	99.5
WP_000466250.1\|3811143_3812385_-\|portal	phage portal protein	U5P411	Shigella_phage	2.6e-242	99.5
WP_000605605.1\|3812384_3812567_-	hypothetical protein	S5FXQ9	Shigella_phage	3.8e-25	98.3
WP_122986317.1\|3812578_3814075_-\|terminase	terminase large subunit	A0A1C9IIA1	Salmonella_phage	9.7e-300	99.6
WP_000929184.1\|3814308_3814803_-\|terminase	phage terminase small subunit P27 family	U5P067	Shigella_phage	2.3e-88	100.0
WP_001135203.1\|3814928_3815279_-	HNH endonuclease	M1FQV2	Enterobacteria_phage	1.4e-63	97.4
WP_000651450.1\|3815371_3815692_-	hypothetical protein	NA	NA	NA	NA
WP_001476996.1\|3815938_3816331_-	DUF2570 domain-containing protein	A0A192Y6H8	Salmonella_phage	7.4e-58	91.4
WP_001075798.1\|3816327_3816942_-	glycoside hydrolase family 19 protein	A0A192Y6G4	Salmonella_phage	1.4e-111	99.0
WP_000422366.1\|3816941_3817223_-\|holin	phage holin family protein	K7PKN9	Enterobacterial_phage	9.7e-20	45.2
WP_001283169.1\|3817209_3817596_-	membrane protein	A0A192Y8P2	Salmonella_phage	7.0e-61	100.0
WP_000220228.1\|3817686_3818283_-	hypothetical protein	NA	NA	NA	NA
WP_000609696.1\|3818389_3818968_-	DUF1133 family protein	A0A0U2S606	Escherichia_phage	1.6e-45	53.9
WP_001471961.1\|3818982_3819972_-	DUF968 domain-containing protein	A0A291AWV9	Escherichia_phage	2.8e-194	99.1
WP_001061444.1\|3819979_3820789_-	KilA-N domain-containing protein	A0A291AWU7	Escherichia_phage	1.8e-151	100.0
WP_000767113.1\|3820808_3821198_-	RusA family crossover junction endodeoxyribonuclease	A0A0P0ZD39	Stx2-converting_phage	7.1e-69	100.0
WP_000210171.1\|3821194_3821521_-	LexA family transcriptional regulator	Q8SBE8	Shigella_phage	9.2e-54	99.1
WP_072749291.1\|3821517_3822171_-	phage N-6-adenine-methyltransferase	A0A0P0ZCC0	Stx2-converting_phage	1.6e-126	99.5
WP_072184155.1\|3822170_3822665_-	PerC family transcriptional regulator	A0A291AWV6	Escherichia_phage	9.6e-87	97.5
WP_000104942.1\|3822661_3823603_-	helix-turn-helix domain-containing protein	U5P0A0	Shigella_phage	1.7e-140	93.3
WP_001250269.1\|3823592_3823772_-	DUF4222 domain-containing protein	S5M7S5	Escherichia_phage	7.8e-15	68.5
WP_000515829.1\|3823947_3824505_-	protein YmfL	S5FXP0	Shigella_phage	1.1e-96	96.2
WP_126677953.1\|3824548_3824749_-	transcriptional regulator	U5P445	Shigella_phage	8.7e-31	98.5
WP_000848748.1\|3824839_3825514_+	LexA family transcriptional repressor	U5P0T5	Shigella_phage	1.2e-132	100.0
WP_001369946.1\|3825685_3825889_+	ClpX C4-type zinc finger	A0A1C9IHZ4	Salmonella_phage	8.9e-15	68.3
WP_001514782.1\|3825897_3826173_+	hypothetical protein	Q8SBF7	Shigella_phage	7.0e-47	97.8
WP_000135682.1\|3826773_3827136_+	hypothetical protein	U5P4J6	Shigella_phage	3.3e-60	100.0
WP_126677951.1\|3827201_3828026_+	DUF2303 family protein	U5P439	Shigella_phage	1.3e-149	99.6
WP_126677949.1\|3828154_3828691_+	5'-deoxynucleotidase	U5P0T3	Shigella_phage	2.4e-99	98.3
WP_001242749.1\|3828681_3829044_+	phage protein	U5P092	Shigella_phage	2.1e-67	100.0
WP_000206732.1\|3829043_3829349_+	hypothetical protein	U5P0J0	Shigella_phage	6.8e-51	100.0
WP_000433939.1\|3829348_3829699_+	helix-turn-helix domain-containing protein	U5P4J3	Shigella_phage	4.9e-61	100.0
WP_000051887.1\|3829575_3830739_+\|integrase	site-specific integrase	U5P434	Shigella_phage	2.4e-229	100.0
WP_000893255.1\|3830943_3832197_-	glutamate-5-semialdehyde dehydrogenase	A0A1X9I5D4	Streptococcus_phage	5.8e-96	47.2
3830753:3830799	attR	NA	NA	NA	NA
WP_001285288.1\|3832208_3833312_-	glutamate 5-kinase	A0A1X9I5D0	Streptococcus_phage	1.1e-61	40.4
WP_000749882.1\|3833599_3834655_+	phosphoporin PhoE	Q1MVN1	Enterobacteria_phage	1.3e-117	60.6

DBSCAN-SWA_12

4467902 : 4517644

Enterobacteria_phage(38.6%)

holin,terminase,capsid,head,plate,integrase,portal,tail,tRNA

attL 4459620:4459635|attR 4487112:4487127

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
4459620:4459635	attL	NA	NA	NA	NA
WP_000543841.1\|4467902_4468940_-\|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	NA	NA	NA	NA
WP_000332269.1\|4469028_4470126_+\|integrase	site-specific integrase	S5MDN5	Escherichia_phage	2.1e-211	99.5
WP_001217553.1\|4470187_4470436_+	DinI family protein	K7PLW4	Enterobacteria_phage	1.8e-38	100.0
WP_161619122.1\|4470543_4471107_-	DUF4376 domain-containing protein	A0A0U2QQK4	Escherichia_phage	1.5e-99	95.7
WP_161619104.1\|4471106_4473479_-\|tail	phage tail protein	A0A0U2SH60	Escherichia_phage	8.8e-279	64.1
WP_161619105.1\|4473503_4474580_-	late control protein	R9TNM7	Vibrio_phage	6.6e-32	29.2
WP_001107807.1\|4474570_4474789_-\|tail	phage tail protein	R9TR63	Vibrio_phage	4.9e-11	52.1
WP_097450115.1\|4474763_4475252_-\|tail	phage tail protein	A0A2H4J875	uncultured_Caudovirales_phage	2.1e-14	35.0
WP_161619106.1\|4475254_4476916_-	hypothetical protein	R9TRP8	Vibrio_phage	8.6e-47	33.6
WP_097450117.1\|4477033_4477336_-\|tail	phage tail assembly protein	NA	NA	NA	NA
WP_033813286.1\|4477397_4477916_-\|tail	tail protein	NA	NA	NA	NA
WP_096095865.1\|4477912_4479388_-\|tail	phage tail protein	R9TMQ0	Vibrio_phage	3.3e-74	38.3
WP_033813288.1\|4479444_4479978_-\|tail	tail assembly chaperone	A0A1S6KZY8	Salmonella_phage	7.0e-35	47.3
WP_033813289.1\|4480005_4480533_-\|tail	tail fiber assembly protein	A0A0U2QV64	Escherichia_phage	9.9e-74	76.3
WP_161619107.1\|4480547_4481801_-\|tail	phage tail protein	A0A0U2SAV1	Escherichia_phage	8.6e-116	89.2
WP_042099704.1\|4481797_4482388_-\|tail	phage tail protein I	A0A193GYD1	Enterobacter_phage	2.1e-24	39.0
WP_161619108.1\|4482380_4483295_-\|plate	baseplate assembly protein	D5LGZ3	Escherichia_phage	8.0e-63	44.2
WP_000579232.1\|4483269_4483626_-	hypothetical protein	V5YTB2	Pseudomonas_phage	1.6e-19	46.8
WP_000049992.1\|4483659_4484283_-\|plate	phage baseplate assembly protein V	F1BUP5	Erwinia_phage	2.4e-10	29.8
WP_097450120.1\|4484266_4484818_-	hypothetical protein	NA	NA	NA	NA
WP_096095872.1\|4484829_4485552_-	hypothetical protein	NA	NA	NA	NA
WP_032083604.1\|4485532_4485934_-	hypothetical protein	NA	NA	NA	NA
WP_001372342.1\|4485936_4486302_-	DNA breaking-rejoining protein	NA	NA	NA	NA
WP_096934545.1\|4486352_4487381_-\|capsid	major capsid protein	C6ZCY2	Enterobacteria_phage	1.3e-109	58.9
4487112:4487127	attR	NA	NA	NA	NA
WP_032083606.1\|4487449_4487785_-\|head	head decoration protein	A0A2R9YJN3	Escherichia_phage	3.3e-22	54.2
WP_096095873.1\|4487824_4489441_-	S49 family peptidase	A0A0K2FI53	Enterobacteria_phage	3.7e-103	53.9
WP_096095880.1\|4489430_4490954_-\|portal	phage portal protein	E4WL21	Enterobacteria_phage	9.9e-183	63.2
WP_000263126.1\|4490998_4491208_-\|head,tail	head-tail joining protein	K7PM10	Enterobacteria_phage	1.4e-10	49.2
WP_000622385.1\|4491211_4493128_-\|terminase	phage terminase large subunit family protein	A0A0K2FJ14	Enterobacteria_phage	1.0e-253	65.9
WP_032083611.1\|4493099_4493648_-\|terminase	terminase small subunit	A0A0U2S671	Escherichia_phage	2.6e-69	98.6
WP_097450134.1\|4495243_4495525_-	hypothetical protein	NA	NA	NA	NA
WP_161619109.1\|4495595_4495973_-	M15 family metallopeptidase	Q9MBZ3	Enterobacteria_phage	3.3e-63	96.0
WP_161619110.1\|4495975_4496251_-\|holin	phage holin family protein	Q9MBZ4	Enterobacteria_phage	2.8e-43	94.5
WP_097449971.1\|4496240_4496633_-\|holin	holin	Q9MBZ5	Enterobacteria_phage	5.5e-53	86.9
WP_097449972.1\|4496811_4497084_+	hypothetical protein	NA	NA	NA	NA
WP_097449973.1\|4497049_4497394_-	YdfR family protein	Q08JA0	Stx2-converting_phage	2.0e-46	83.0
WP_097449974.1\|4497398_4497614_-\|holin	holin	G9L6J5	Escherichia_phage	2.2e-32	97.2
WP_161619111.1\|4497879_4498203_+	anti-adapter protein IraM	Q8HAJ1	Enterobacteria_phage	6.5e-60	98.1
WP_000738076.1\|4498390_4498660_-	Shiga toxin Stx2d subunit B	Q5TJL5	Enterobacteria_phage	3.0e-42	97.8
WP_097449975.1\|4498671_4499631_-	Shiga toxin Stx2 subunit A	Q6DWN9	Enterobacteria_phage	1.8e-169	96.6
WP_097449976.1\|4500000_4500714_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_000917767.1\|4500850_4501048_-	hypothetical protein	Q9MC00	Enterobacteria_phage	2.1e-29	100.0
WP_057108854.1\|4501221_4501935_-	hypothetical protein	NA	NA	NA	NA
WP_161619112.1\|4502188_4502854_-	antiterminator	I6PDF8	Cronobacter_phage	1.1e-61	52.9
WP_136769107.1\|4502850_4503210_-	RusA family crossover junction endodeoxyribonuclease	V5URS4	Shigella_phage	1.8e-39	66.7
WP_136769108.1\|4503222_4504212_-	DUF968 domain-containing protein	A0A291AWV9	Escherichia_phage	4.6e-189	95.7
WP_001061438.1\|4504219_4505029_-	KilA-N domain-containing protein	A5LH75	Enterobacteria_phage	8.2e-152	100.0
WP_000767141.1\|4505048_4505438_-	RusA family crossover junction endodeoxyribonuclease	A0A291AX14	Escherichia_phage	1.6e-68	99.2
WP_000210169.1\|4505434_4505761_-	LexA family transcriptional regulator	K7PLX6	Enterobacteria_phage	9.2e-54	100.0
WP_072127929.1\|4506409_4506904_-	PerC family transcriptional regulator	A0A291AWV6	Escherichia_phage	3.6e-86	98.1
WP_024211007.1\|4506900_4507719_-	helix-turn-helix domain-containing protein	A0A291AWW0	Escherichia_phage	1.8e-122	99.3
WP_000620696.1\|4507715_4507940_-	hypothetical protein	A5LH70	Enterobacteria_phage	5.7e-39	100.0
WP_136769109.1\|4507936_4509088_-	peptidase	K7PLX4	Enterobacteria_phage	6.9e-205	96.1
WP_000515862.1\|4509084_4509636_-	hypothetical protein	Q8SBF4	Shigella_phage	9.9e-101	99.5
WP_001191669.1\|4509628_4509889_-	helix-turn-helix transcriptional regulator	K7PJQ8	Enterobacteria_phage	5.4e-41	100.0
WP_001345148.1\|4509986_4510679_+	helix-turn-helix transcriptional regulator	S5FUZ3	Shigella_phage	8.3e-121	96.1
WP_000135680.1\|4511402_4511765_+	hypothetical protein	Q8SBF8	Shigella_phage	8.6e-61	100.0
WP_161619113.1\|4511830_4512655_+	YfdQ family protein	Q8SBF9	Shigella_phage	6.6e-149	98.5
WP_000008178.1\|4512783_4513320_+	5'-deoxynucleotidase	A0A0P0ZCH9	Stx2-converting_phage	2.2e-100	99.4
WP_097455379.1\|4513310_4513673_+	hypothetical protein	K7PH61	Enterobacteria_phage	2.3e-66	97.5
WP_000111289.1\|4513669_4513873_+	hypothetical protein	K7PLX1	Enterobacteria_phage	1.0e-31	98.5
WP_000476211.1\|4513865_4514105_+	hypothetical protein	S5MQM0	Escherichia_phage	2.2e-36	98.7
WP_027661982.1\|4514101_4514356_+	hypothetical protein	A0A0U2RK51	Escherichia_phage	3.3e-43	97.6
WP_161619114.1\|4514722_4515685_+	DUF551 domain-containing protein	Q8VNQ2	Enterobacteria_phage	4.6e-69	93.6
WP_097455382.1\|4515684_4516257_+	3'-5' exoribonuclease	K7PLW7	Enterobacteria_phage	4.3e-107	97.4
WP_001093911.1\|4516293_4516566_+	hypothetical protein	S5MQM5	Escherichia_phage	7.2e-44	100.0
WP_053878051.1\|4516599_4517148_-	hypothetical protein	S5M7T3	Escherichia_phage	2.0e-77	86.3
WP_059242328.1\|4517170_4517644_-	SocA family protein	K4NZT7	Burkholderia_phage	2.4e-18	31.8

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP041436

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NZ_CP041435

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection