CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP047810	Staphylococcus aureus strain UP_1591 plasmid unnamed, complete sequence	0 crisprs	NA	0	0	0	0
NZ_CP047809	Staphylococcus aureus strain UP_1591 chromosome, complete genome	10 crisprs	DEDDh,DinG,cas3,csa3,WYL	7	3	216	1

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP047809_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP047809_1

62590-62872

Orphan

Consensus_repeat	Method
AAAGNCAGCTNNNNANANNNTGCAAGTTGG	CRT

4 spacers

The CRISPR arrays of NZ_CP047809_1

>merge|NZ_CP047809|1|62590-62872|CRT
AAAGTCAGCTTACAATAGTGTGCAAGTTGGCGGGGCCCCAACACAGAGGCTGGCGGAAAGTCAGCTTACAATAGTGTGCAAGTTGGGGTGGAGCCCCGACACAGAGAAATTAGCTCCTCAATTTCTACAGACAATGCAAGTTGGCGGGGCCCCAACACAGAAGCTGGCGAAAAGTCAGCTTACAATAGTGTGCAAGTTGGGGTGGGACGACGAAATAAATTTTGCGAAAATATCATTTCTGTCCCACTCCCAAAAAGACAGCAGTAGGATAATTTCAATTTGG

>NZ_CP047809|1|1|62590-62872|CRT
AAAGTCAGCTTACAATAGTGTGCAAGTTGG	CGGGGCCCCAACACAGAGGCTGGCGG
AAAGTCAGCTTACAATAGTGTGCAAGTTGG	GGTGGAGCCCCGACACAGAGAAATTAGC
TCCTCAATTTCTACAGACAATGCAAGTTGG	CGGGGCCCCAACACAGAAGCTGGCGA
AAAGTCAGCTTACAATAGTGTGCAAGTTGG	GGTGGGACGACGAAATAAATTTTGCGAAAATATCATTTCTGTCCCACTCCCAA
AAAGACAGCAGTAGGATAATTTCAATTTGG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP047809.1\|WP_000066053.1\|64112_65492_-\|argininosuccinate-lyase	unknown	unknown	gnl\|CDD\|179143
NZ_CP047809.1\|WP_000573077.1\|51478_52975_-\|Na+/H+-antiporter-subunit-D	unknown	unknown	gnl\|CDD\|181085
NZ_CP047809.1\|WP_000035058.1\|56712_57306_+\|peptidyl-prolyl-cis-trans-isomerase	unknown	unknown	gnl\|CDD\|238908
NZ_CP047809.1\|WP_000167314.1\|59895_61086_+\|ornithine--oxo-acid-transaminase	unknown	unknown	gnl\|CDD\|179736
NZ_CP047809.1\|WP_000007967.1\|68693_69269_+\|TVP38/TMEM64-family-protein	unknown	unknown	gnl\|CDD\|223475
NZ_CP047809.1\|WP_000138487.1\|61194_62439_+\|Glu/Leu/Phe/Val-dehydrogenase	unknown	unknown	gnl\|CDD\|223411
NZ_CP047809.1\|WP_000172342.1\|70548_74025_+\|helicase-exonuclease-AddAB-subunit-AddB	unknown	unknown	gnl\|CDD\|213736
NZ_CP047809.1\|WP_001067294.1\|57721_58099_+\|S1-RNA-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|224023
NZ_CP047809.1\|WP_000660045.1\|65481_66687_-\|argininosuccinate-synthase	unknown	unknown	gnl\|CDD\|234785
NZ_CP047809.1\|WP_161575635.1\|53729_56135_-\|Na+/H+-antiporter-subunit-A	unknown	unknown	gnl\|CDD\|237155
NZ_CP047809.1\|WP_000154930.1\|74025_77679_+\|helicase-exonuclease-AddAB-subunit-AddA	unknown	unknown	gnl\|CDD\|274299
NZ_CP047809.1\|WP_001081626.1\|53308_53737_-\|Na(+)/H(+)-antiporter-subunit-B	unknown	unknown	gnl\|CDD\|183602
NZ_CP047809.1\|WP_161575636.1\|58460_59588_+\|NADH-dependent-flavin-oxidoreductase	unknown	unknown	gnl\|CDD\|240086
NZ_CP047809.1\|WP_000758215.1\|69273_69798_+\|signal-peptidase-I	unknown	unknown	gnl\|CDD\|274044
NZ_CP047809.1\|WP_000711486.1\|69813_70389_+\|signal-peptidase-I	unknown	unknown	gnl\|CDD\|274044
NZ_CP047809.1\|WP_000670752.1\|77844_78747_+\|fumarylacetoacetate-hydrolase-family-protein	unknown	unknown	gnl\|CDD\|223257
NZ_CP047809.1\|WP_000185319.1\|62941_63871_-\|glycerophosphodiester-phosphodiesterase	unknown	unknown	gnl\|CDD\|176543
NZ_CP047809.1\|WP_000148849.1\|67037_68369_+\|glucose-6-phosphate-isomerase	unknown	unknown	gnl\|CDD\|184504
NZ_CP047809.1\|WP_011443624.1\|52967_53297_-\|Na(+)/H(+)-antiporter-subunit-C	unknown	unknown	gnl\|CDD\|181497
NZ_CP047809.1\|WP_000781156.1\|56265_56649_-\|kinase	unknown	unknown	gnl\|CDD\|378054

Protein	Function_ID	Function_description	E-value
NZ_CP047809.1\|WP_000066053.1\|64112_65492_-\|argininosuccinate-lyase	gnl\|CDD\|179143	PRK00855, PRK00855, argininosuccinate lyase; Provisional.	0
NZ_CP047809.1\|WP_000573077.1\|51478_52975_-\|Na+/H+-antiporter-subunit-D	gnl\|CDD\|181085	PRK07691, PRK07691, putative monovalent cation/H+ antiporter subunit D; Reviewed.	0
NZ_CP047809.1\|WP_000035058.1\|56712_57306_+\|peptidyl-prolyl-cis-trans-isomerase	gnl\|CDD\|238908	cd01927, cyclophilin_WD40, cyclophilin_WD40: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) having a WD40 domain. This group consists of several hypothetical and putative eukaryotic and bacterial proteins which have a cyclophilin domain and a WD40 domain. Function of the protein is not known.	3.93388e-65
NZ_CP047809.1\|WP_000167314.1\|59895_61086_+\|ornithine--oxo-acid-transaminase	gnl\|CDD\|179736	PRK04073, rocD, ornithine--oxo-acid transaminase; Provisional.	0
NZ_CP047809.1\|WP_000007967.1\|68693_69269_+\|TVP38/TMEM64-family-protein	gnl\|CDD\|223475	COG0398, COG0398, Uncharacterized conserved protein [Function unknown].	1.01759e-40
NZ_CP047809.1\|WP_000138487.1\|61194_62439_+\|Glu/Leu/Phe/Val-dehydrogenase	gnl\|CDD\|223411	COG0334, GdhA, Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism].	0
NZ_CP047809.1\|WP_000172342.1\|70548_74025_+\|helicase-exonuclease-AddAB-subunit-AddB	gnl\|CDD\|213736	TIGR02773, ATP-dependent_helicase/deoxyribonuclease_subunit_B, helicase-exonuclease AddAB, AddB subunit. DNA repair is accomplished by several different systems in prokaryotes. Recombinational repair of double-stranded DNA breaks involves the RecBCD pathway in some lineages, and AddAB (also called RexAB) in other. The AddA protein is conserved between the firmicutes and the alphaproteobacteria, while the partner protein is not. Nevertheless, the partner is designated AddB in both systems. This model describes the AddB protein as found Bacillus subtilis and related species. Although the RexB protein of Streptococcus and Lactococcus is considered to be orthologous, functionally equivalent, and merely named differently, all members of this protein family have a P-loop nucleotide binding motif GxxGxGK[ST] at the N-terminus, unlike RexB proteins, and a CxxCxxxxxC motif at the C-terminus, both of which may be relevant to function. [DNA metabolism, DNA replication, recombination, and repair].	0
NZ_CP047809.1\|WP_001067294.1\|57721_58099_+\|S1-RNA-binding-domain-containing-protein	gnl\|CDD\|224023	COG1098, VacB, Predicted RNA binding protein (contains ribosomal protein S1 domain) [Translation, ribosomal structure and biogenesis].	3.22125e-44
NZ_CP047809.1\|WP_000660045.1\|65481_66687_-\|argininosuccinate-synthase	gnl\|CDD\|234785	PRK00509, PRK00509, argininosuccinate synthase; Provisional.	0
NZ_CP047809.1\|WP_161575635.1\|53729_56135_-\|Na+/H+-antiporter-subunit-A	gnl\|CDD\|237155	PRK12645, PRK12645, monovalent cation/H+ antiporter subunit A; Reviewed.	0
NZ_CP047809.1\|WP_000154930.1\|74025_77679_+\|helicase-exonuclease-AddAB-subunit-AddA	gnl\|CDD\|274299	TIGR02785, ATP-dependent_helicase/nuclease_subunit_A, helicase-exonuclease AddAB, AddA subunit, Firmicutes type. AddAB, also called RexAB, substitutes for RecBCD in several bacterial lineages. These DNA recombination proteins act before synapse and are particularly important for DNA repair of double-stranded breaks by homologous recombination. The term AddAB is used broadly, with AddA homologous between the Firmicutes (as modeled here) and the alphaproteobacteria, while the partner AddB proteins show no strong homology across the two groups of species. [DNA metabolism, DNA replication, recombination, and repair].	0
NZ_CP047809.1\|WP_001081626.1\|53308_53737_-\|Na(+)/H(+)-antiporter-subunit-B	gnl\|CDD\|183602	PRK12573, PRK12573, Na(+)/H(+) antiporter subunit B.	9.17513e-61
NZ_CP047809.1\|WP_161575636.1\|58460_59588_+\|NADH-dependent-flavin-oxidoreductase	gnl\|CDD\|240086	cd04735, OYE_like_4_FMN, Old yellow enzyme (OYE)-related FMN binding domain, group 4. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.	0
NZ_CP047809.1\|WP_000758215.1\|69273_69798_+\|signal-peptidase-I	gnl\|CDD\|274044	TIGR02227, Inactive_signal_peptidase_IA., signal peptidase I, bacterial type. This model represents signal peptidase I from most bacteria. Eukaryotic sequences are likely organellar. Several bacteria have multiple paralogs, but these represent isozymes of signal peptidase I. Virtually all known bacteria may be presumed to A related model finds a simlar protein in many archaea and a few bacteria, as well as a microsomal (endoplasmic reticulum) protein in eukaryotes. [Protein fate, Protein and peptide secretion and trafficking].	2.63848e-48
NZ_CP047809.1\|WP_000711486.1\|69813_70389_+\|signal-peptidase-I	gnl\|CDD\|274044	TIGR02227, Inactive_signal_peptidase_IA., signal peptidase I, bacterial type. This model represents signal peptidase I from most bacteria. Eukaryotic sequences are likely organellar. Several bacteria have multiple paralogs, but these represent isozymes of signal peptidase I. Virtually all known bacteria may be presumed to A related model finds a simlar protein in many archaea and a few bacteria, as well as a microsomal (endoplasmic reticulum) protein in eukaryotes. [Protein fate, Protein and peptide secretion and trafficking].	4.05406e-53
NZ_CP047809.1\|WP_000670752.1\|77844_78747_+\|fumarylacetoacetate-hydrolase-family-protein	gnl\|CDD\|223257	COG0179, MhpD, 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) [Secondary metabolites biosynthesis, transport, and catabolism].	1.0042e-87
NZ_CP047809.1\|WP_000185319.1\|62941_63871_-\|glycerophosphodiester-phosphodiesterase	gnl\|CDD\|176543	cd08601, GDPD_SaGlpQ_like, Glycerophosphodiester phosphodiesterase domain of Staphylococcus aureus and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in uncharacterized glycerophosphodiester phosphodiesterase (GP-GDE, EC 3.1.4.46) from Staphylococcus aureus, Bacillus subtilis and similar proteins. Members in this family show very high sequence similarity to Escherichia coli periplasmic phosphodiesterase GlpQ, which catalyzes the Ca2+-dependent degradation of periplasmic glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.	5.11302e-151
NZ_CP047809.1\|WP_000148849.1\|67037_68369_+\|glucose-6-phosphate-isomerase	gnl\|CDD\|184504	PRK14097, pgi, glucose-6-phosphate isomerase; Provisional.	0
NZ_CP047809.1\|WP_011443624.1\|52967_53297_-\|Na(+)/H(+)-antiporter-subunit-C	gnl\|CDD\|181497	PRK08600, PRK08600, putative monovalent cation/H+ antiporter subunit C; Reviewed.	3.20641e-61
NZ_CP047809.1\|WP_000781156.1\|56265_56649_-\|kinase	gnl\|CDD\|378054	pfam08810, KapB, Kinase associated protein B. This bacterial protein forms an anti-parallel beta sheet with an extending alpha helical region.	1.89892e-52

>NZ_CP047809.1|WP_000138487.1|61194_62439_+|Glu/Leu/Phe/Val-dehydrogenase
MTENNNLVTSTQGIIKEALHKLGFDEGMYDLIKEPLRMLQVRIPVRMDDGTVKTFTGYRAQHNDAVGPTKGGVRFHPDVDEEEVKALSMWMTLKCGIVNLPYGGGKGGIVCDPRQMSIHEVERLSRGYVRAISQFVGPNKDIPAPDVFTNSQIMAWMMDEYSALDKFNSPGFITGKPIVLGGSHGRDRSTALGVVIAIEQAAKRRNMQIEGAKVVIQGFGNAGSFLAKFLYDLGAKIVGISDAYGALHDPNGLDIDYLLDRRDSFGTVTNLFEETISNKELFELDCDILVPAAISNQITEDNAHDIKASIVVEAANGPTTPEATRILTERGILLVPDVLASAGGVTVSYFEWVQNNQGYYWSEEEVNEKLREKLEAAFDTIYELSQNRKIDMRLAAYIIGIKRTAEAARYRGWA
>NZ_CP047809.1|WP_000167314.1|59895_61086_+|ornithine--oxo-acid-transaminase
MTKSEKIIELTNHYGAHNYLPLPIVISEAEGVWVKDPEGNKYMDMLSAYSAVNQGHRHPKIIQALKDQADKVTLVSRAFHSDNLGEWYEKICKLAGKDKALPMNTGAEAVETALKAARRWAYDVKGIEPNKAEIIAFNGNFHGRTMAPVSLSSEAEYQRGYGPLLDGFRKVDFGDVDALKAAINENTAAVLVEPIQGEAGINIPPEGYLKAIRELCDEHNVLFIADEIQAGLGRSGKLFATDWDNVKPDVYILGKALGGGVFPISVVLADKEVLDVFTPGSHGSTFGGNPLACAASIAALDVIVDEDLPGRSLELGDYFKEQLKQIDHPSIKEVRGRGLFIGVELNESARPYCEALKEEGLLCKETHDTVIRFAPPLIITKEELDLALEKIRHVFQ
>NZ_CP047809.1|WP_161575636.1|58460_59588_+|NADH-dependent-flavin-oxidoreductase
MKSKYEPLFDKVELPNGVELRNRFVLAPLTHISSNDDGTISDVELPYIEKRSQDVGITINAASNVSDVGKAFPGQPSIAHDSNIEGLKRLATAMKKNSAKALVQIHHGGAQALPELTPDGDVVAPSPISLKSFGQKQEHSAREMTNEEIEQAIKDFGEATRRAIEAGFDGVEIHGANHYLIHQFVSPYYNRRNDVWANQYKFPVAVIEEVLKAKEAYGNKDFIVGYRLSPEEAESPGITMEITEELVNKISHMPIDYIHVSMMDTHATTREGKYAGQERLPLIHKWINGRMPLIGIGSIFTADEALDAVENVGVDLVAIGRELLLDYQFVEKIKDGREDEIINYFDPEREDNHHLTPNLWHQFNEGFYPLPRKDK
>NZ_CP047809.1|WP_001067294.1|57721_58099_+|S1-RNA-binding-domain-containing-protein
MNNYKIGQHIKVRVTGIQPYGAFVETPNHTEGLIHISEIMDDYVHNLKKFLSEGQIVKAKILSIDDEGKLNLSLKDNDYFKNYERKKEKQSVLDEIRETEKYGFQTLKERLPIWIKQSKRAIRND
>NZ_CP047809.1|WP_000035058.1|56712_57306_+|peptidyl-prolyl-cis-trans-isomerase
MANYPQLNKEVQQGEIKVVMHTNKGDMTFKLFPNIAPKTVENFVTHAKNGYYDGITFHRVINDFMIQGGDPTATGMGGESIYGGAFEDEFSLNAFNLYGALSMANSGPNTNGSQFFIVQMKEVPQNMLSQLADGGWPQPIVDAYGEKGGTPWLDQKHTVFGQIIDGETTLEDIANTKVGPQDKPLHDVVIESIDVEE
>NZ_CP047809.1|WP_000781156.1|56265_56649_-|kinase
MKLYRFSHKTGSYGVTIVEENGDDVLVKVEQVIKHPKQGDLHNPTETEGVFFHDRKALSHFEKRYTKRSQLRDFNVDVLRYEDSLQQAITDLETKLKAQQTKHAEMSLASLARLKEDYSLQYKENFK
>NZ_CP047809.1|WP_161575635.1|53729_56135_-|Na+/H+-antiporter-subunit-A
MSLLHIAVILPLIFALIIPILYRFFKRIHLGWFVLPVPIVIFIYMLTLIKTTMSGNTVMKTLNWMPHFGMNFDLYLDGLGLLFSLLISGIGSLVVLYSIGYLSKSEQLGNFYCYLLLFMGAMLGVVLSDNVIILYLFWELTSFSSFLLISFWRERQASIYGAQKSLIITVFGGLSLLGGIILLAIPTQSFSIQYMIQHASEIQNSPFFIFAMILIMIGAFTKSAQFPFYIWLPDAMEAPTPVSAYLHSATMVKAGLYLIARMTPIFAASQGWVWTVTLVGLITLFWASLNATKQQDLKGILAFSTVSQLGMIMAMLGIGAISYHYQGDDSKIYAAAFTAAIFHLINHATFKGALFMITGAVDHSTGTRDVKKLGGLLTIMPISFTITVITALSMAGVPPFNGFLSKESFLETTFTASQANLFSVDTLGYLFPIIGIAGSVFTFVYSIKFIMHIFFGQYKPEQLPKKAHEVSILMLLSPAILATLVIVFGLFPGILTNSIIEPATSSINHTVIDDVEFHMFHGLTPAFLSTLVIYILGILLIVTFSYWVKLLQRQPGKLTFNYWYNRSANVIPNYSEKMTNSYVTDYSRNNLVIIFGALILLTFVTIFSVPFNINFKDVSPIRIFEVCIVILLLSAAFLILFAKSRLFSIIMLSAVGYAVSVLFIFFKAPDLALTQFVVESISTALFLLCFYHLPNLNRYNEKRSFQLTNALIAGGVGLSVIIIGLIAYGNRHFESISKFYQEHVYDLAHGKNMVNVILVDFRGMDTLFESSVLGIAGLAVYTMIKLRKKRQTQGNEVKNHE
>NZ_CP047809.1|WP_001081626.1|53308_53737_-|Na(+)/H(+)-antiporter-subunit-B
MNRQQNDLILQFAAVIIFFMVMVFGFSLFLAGHYTPGGGFVGGLLFASSLVIITIAFDIETMRKIFPLDFKILIGIGLVFCIATPIASWFLGKNFFTHVTFDIPLFILEPVHMTTAVFFDFGVLCAVVGTVMTIIISIGENE
>NZ_CP047809.1|WP_011443624.1|52967_53297_-|Na(+)/H(+)-antiporter-subunit-C
MIFVSGILTAISVYLVLSKSLIRIVMGTTLLTHAANLFLITMGGLKHGTVPIYEANVKSYVDPIPQALILTAIVIAFATTAFFLVLAFRTYKELGTDNVESMKGVPEDD
>NZ_CP047809.1|WP_000573077.1|51478_52975_-|Na+/H+-antiporter-subunit-D
MIESNMLVLTLVIPVITAILLVFIGKRPIIKRYVALGGTLLTLVAAIINLANVVKHGPIRVELGSWKAPYSIVFVLDIFSALLIITSIIITAIVILYSYQTIGIERERYYYYFSVLFMLIGIIGAFTTGDIFNLFVFFEVFLMSSYFLLVIGSTKIQLQETIKYVLVNVVSSSFFVMGVAILYSVVGTLNLADISNKLANLSAHDSGLVNIVFILFIFVFATKAGVFPMFVWLPSAYYAPPIPIIAFFGALLTKVGVYAIARTLSLFFSDNVSFSHYVILFLALLTIIFGCVGAVAYANIKKIILYNVMIAVGVILVGVAMMTESGMIGAIYYTLHDMLVKLALFLLIGIMIKITGTADLRQFGGLIKRYPVLGWSFFIAALSLAGIPPLSGFYGKFFIVQSTFERGFYLSGVIVLLSSLVVLYSVIRIFLQGFFGQPKGYDLNNKVDVKYLTTIAIVAVVITVLYGLSADYLYPMVKAGAETFYNPSTYVKAVLGGK
>NZ_CP047809.1|WP_000185319.1|62941_63871_-|glycerophosphodiester-phosphodiesterase
MTNSSKSFTKFMAASAVFTMGFLSVPTAGAEQTNQIANKPQAIQWHTNLTNERFTTIAHRGASGYAPEHTFQAYDKSHNELKASYIEIDLQRTKDGHLVAMHDETVNRTTNGHGKVEDYTLDELKQLDAGSWFNKKYPKYARASYKNAKVPTLDEILERYGPNANYYIETKSPDVYPGMEEQLLASLKKHHLLNNNKLKNGHVMIQSFSDESLKKIHRQNKHVPLVKLVDKGELQQFNDQRLKEIRSYAIGLGPDYTDLTEQNTHHLKDLGFIVHPYTVNEKADMLRLNKYGVDGVFTNFADKYKEVIK
>NZ_CP047809.1|WP_000066053.1|64112_65492_-|argininosuccinate-lyase
MSNKAWGGRFEVQPEEWVDDFNASITFDQTLIDQDIEGSIAHATMLANQGIISQQDSEQIIQGLKSIQHDYHQDQIQFSASLEDIHLNIEHELIKRIGDAGGKLHTGRSRNDQVATDMHLYTKKQVQDIIALIKSLQSVIVDIASNNVDTIMPGYTHLQRAQPISFAHHIMTYFWMLQRDQQRFEDSLKRIDINPLGAAALSGTTYPIDRHETTALLNFGSLYENSLDAVSDRDYIIETLHNISLTMVHLSRFAEEIIFWSTDEAKFITLSDAFSTGSSIMPQKKNPDMAELIRGKVGRTTGHLMSMLMTLKGLPLAYNKDMQEDKEGLFDAVHTIKGSLRIFEGMIQTMTINKERLNQTVKEDFSNATELADYLVTKNIPFRTAHEIVGKIVLECIQQGHYLLDVPLATYQQHHSSIDADIYDYLQPENCLKRRQSYGSTGQSSVKQQLDVAKQLLSQ
>NZ_CP047809.1|WP_000660045.1|65481_66687_-|argininosuccinate-synthase
MKEKIVLAYSGGLDTSVAVQWLIDKGYDVVACCLDVGEGKDLDIVYKKALDMGAVECHIIDATKEFSDEYVSYAIKGNLMYENAYPLVSALSRPLIAKKLVEIAEKTNSVGIAHGCTGKGNDQVRFEVAIKALNPSLKAFAPVREWAWSREEEIDYAIKHNIPVSINHDSPYSIDQNLWGRANECGILEDPYAAPPEDAFDLTNALEETPDTADEIILTFDKGIPVQIDGKTYELDDLILTLNALAGKHGIGRIDHVENRLVGIKSREIYEAPAAEVILKAHKALETITLTKDVAHFKPIIEKQFAEQLYNGLWFSPLTDSLKLFIDSTQQYVSGDVRIKLFKGNAIVNGRKSPYTLYDEKLATYTKEDAFNQDAAVGFIDIYGLPTQVNAMLHGGYSNEQ
>NZ_CP047809.1|WP_000148849.1|67037_68369_+|glucose-6-phosphate-isomerase
MTHIQLDFSKTLEFFGEHELKQQQEIVKSIHKTIHEGTGAGSDFLGWIDLPVDYDKEEFSRIVEASKRIKENSDVLVVIGIGGSYLGARAAIEMLTSSFRNSNEYPEIVFVGNHLSSTYTKELVDYLADKDFSVNVISKSGTTTEPAVAFRLFKQLVEERYGKEEAQKRIFATTDKEKGALKQLATNEGYETFIVPDDVGGRYSVLTAVGLLPIATAGINIEAMMIGAAKAREELSSDKLEENIAYQYATIRNILYAKGYTTEMLINYEPSMQYFNEWWKQLFGESEGKDFKGIYPSSANYTTDLHSLGQYVQEGRRFLFETVVKVNHPKYDITIEKDSDDLDGLNYLAGKTIDEVNTKAFEGTLLAHTDGGVPNMVVNIPQLDEETFGYVVYFFELACAMSGYQLGVNPFNQPGVEAYKQNMFALLGKPGFEDLKKELEERL
>NZ_CP047809.1|WP_000007967.1|68693_69269_+|TVP38/TMEM64-family-protein
MSFHQVEEWFEIFRQFGYLPGFILLYIRAIIPVFPLALYILINIQAYGPILGILISWLGLISGTFTVYLICKRLVNTERMQRIKQRTAVQRLISFIDRQGLIPLFILLCFPFTPNTLINFVASLSHIRPKYYFIVLASSKLVSTIILGYLGKEITTILTHPLRGILMLVVLVVFWIVGKKLEQHFMGSKKE
>NZ_CP047809.1|WP_000758215.1|69273_69798_+|signal-peptidase-I
MKKVVKYLISLILAIIIVLFVQTFVIVGHVIPNNDMSPTLNKGDRVIVNKIKVTFNQLNNGDIITYRRGNEIYTSRIIAKPGQSMAFRQGQLYRDDRPVDASYAKNRKIKDFSLRNFKELDGDIIPPNNFVVLNDQDNNKHDSRQFGLIDKKDIIGNVSLRYYPFSKWTVQFKS
>NZ_CP047809.1|WP_000711486.1|69813_70389_+|signal-peptidase-I
MKKEILEWIISIAVAFVILFIVGKFIVTPYTIKGESMDPTLKDGERVAVNIVGYKTGGLEKGNVVVFHANKNDDYVKRVIGVPGDKVEYKNDTLYVNGKKQDEPYLNYNLKHKQGDYITGTFQVKDLPNANPKSNVIPKGKYLVLGDNREVSKDSRAFGLIDEDQIVGKVSFRFWPFSEFKHNFNPENTKN
>NZ_CP047809.1|WP_000172342.1|70548_74025_+|helicase-exonuclease-AddAB-subunit-AddB
MTLHAYLGRAGTGKSTKMLTEIKQKMKADPLGDPIILIAPTQSTFQLEQAFVNDPELNGSLRTEVLHFERLSHRIFQEVGSYSEQKLSKAATEMMIYNIVQEQQKYLKLYQSQAKYYGFSEKLTEQIQDFKKYAVTPEHLEHFIADKNMQTRTKNKLEDIALIYREFEQRIQNEFITGEDSLQYFIDCMPKSEWLKRADIYIDGFHNFSTIEYLIIKGLIKYAKSVTIILTTDGNHDQFSLFRKPSEVLRHIEEIANELNISIERQYFNQLYRFNNQDLKHLEQEFDALQINRVACQGHINILESATMREEINEIARRIIVDIRDKQLRYQDIAILYRDESYAYLFDSILPLYNIPYNIDTKRSMTHHPVMEMIRSLIEVIQSNWQVNPMLRLLKTDVLTASYLKSAYLVDLLENFVLERGIYGKRWLDDELFNVEHFSKMGRKAHKLTEDERNTFEQVVKLKKDVIDKILHFEKQMSQAETVKDFATAFYESMEYFELPNQLMTERDELDLNGNHEKAEEIDQIWNGLIQILDDLVLVFGDEPMSMERFLEVFDIGLEQLEFVMIPQTLDQVSIGTMDLAKVDNKQHVYLVGMNDGTMPQPVTASSLITDEEKKYFEQQANVELSPTSDILQMDEAFVCYVAMTRAKGDVTFSYSLMGSSGDDKEISPFLNQIQSLFNQLEITNIPQYHEVNPLSLMQHAKQTKITLFEALRAWLYDEIVADSWLDAYQVIRDSDHLNQGLDYLMSALTFDNETVKLGETLSKDLYGKEINASVSRFEGYQQCPFKHYASHGLKLNERTKYELQNFDLGDIFHSVLKYISERINGDFKQLDLKKIRQLTNEALEEILPKVQFNLLNSSAYYRYLSRRIGAIVETTLSALKYQGTYSKFMPKHFETSFRRKPRTNDELIAQTLTTTQGIPINIRGQIDRIDTYTKNDTSFVNIIDYKSSEGSATLDLTKVYYGMQMQMMTYMDIVLQNKQRLGLTDIVKPGGLLYFHVHEPRIKFKSWSDIDEDKLEQDLIKKFKLSGLVNADQTVIDALDIRLEPKFTSDIVPVGLNKDGSLSKRGSQVADEATIYKFIQHNKENFIETASNIMDGHTEVAPLKYKQKLPCAFCSYQSVCHVDGMIDSKRYRTVDETINPIEAIQNININDEFGGEQ
>NZ_CP047809.1|WP_000154930.1|74025_77679_+|helicase-exonuclease-AddAB-subunit-AddA
MTIPEKPQGVIWTDAQWQSIYATGQDVLVAAAAGSGKTAVLVERIIQKILRDGIDVDRLLVVTFTNLSAREMKHRVDQRIQEASIADPANAHLKNQRIKIHQAQISTLHSFCLKLIQQHYDVLNIDPNFRTSSEAENILLLEQTIDEVIEQHYDILDPAFIELTEQLSSDRSDDQFRMIIKQLYFFSVANPNPTNWLDQLVTPYEEEAQQAQLIQLLTDLSKVFITAAYDALNKAYDLFSMMDSVDKHLAVIEDERRLMGRVLEGGFIDIPYLTGHEFGARLPNVTAKIKEANEMMVDALEDAKLQYKKYKSLIDKVKSDYFSREADDLKADMQQLAPRVKYLARIVKDVMSEFNRKKRSKNILDFSDYEHFALQILTNEDGSPSEIAESYRQHFQEILVDEYQDTNRVQEKILSCIKTGDEHNGNLFMVGDVKQSIYKFRQADPSLFIEKYQRFTIDGDGTGRRIDLSQNFRSRKEVLSTTNYIFKHMMDEQVGEVKYDEAAQLYYGAPYDESDHPVNLKVLVEADQEHSDLTGSEQEAHFIVEQVKDILEHQKVYDMKTGSYRSATYKDIVILERSFGQARNLQQAFKNEDIPFHVNSREGYFEQTEVRLVLSFLRAIDNPLQDIYLVGLMRSVIYQFKEDELAQIRILSPNDDYFYQSIVNYINDEAADAILVDKLKMFLSDIQSYQQYSKDHPVYQLIDKFYNDHYVIQYFSGLIGGRGRRANLYGLFNKAIEFENSSFRGLYQFIRFIDELIERGKDFGEENVVGPNDNVVRMMTIHSSKGLEFPFVIYSGLSKDFNKRDLKQPVILNQQFGLGMDYFDVDKEMAFPSLASVAYRAVAEKELVSEEMRLVYVALTRAKEQLYLIGRVKNDKSLLELEQLSISGEHIAVNERLTSPNPFHLIYSILSKHQSASIPDDLKFEKDIAQIEDSSRPNVNISIVYFEDVSTETILDNDEYRSVNQLETMQNGNEDVKAQIKHQLDYRYPYVNDTKKPSKQSVSELKRQYETEESGTSYERVRQYRIGFSTYERPKFLSEQGKRKANEIGTLMHTVMQHLPFKKERISEVELHQYIDGLIDKHIIEADAKKDIRMDEIMTFINSELYSIIAEAEQVYRELPFVVNQALVDQLPQGDEDVSIIQGMIDLIFVKDGVHYFVDYKTDAFNRRRGMTDEEIGTQLKNKYKIQMKYYQNTLQTILNKEVKGYLYFFKFGTLQL
>NZ_CP047809.1|WP_000670752.1|77844_78747_+|fumarylacetoacetate-hydrolase-family-protein
MKFLSFKYNDKTSYGVKVKREDAVWDLTQVFADFAEGDFHPKTLLAGLQQNHTLDFQEQVRKAVVAAEDSGKAEDYKISFNDIEFLPPVTPPNNVIAFGRNYKDHANELNHEVEKLYVFTKAASSLTGDNATIPNHKDITDQLDYEGELGIVIGKSGEKIPKALALDYVYGYTIINDITDRKAQSEQDQAFLSKSLTGGCPMGPYIVTKDELPLPENVNIVTKVNNEIRQDGNTGEMILKIDELIEEISKYVALHPGDIIATGTPAGVGAGMQPPKFLQPGDEVKVTIDNIGTLTTYIAK

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Crispr_ID: NZ_CP047809_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP047809_2

293578-293764

Orphan

Consensus_repeat	Method
GGCGGGGCCCCAACATAGA	CRT

3 spacers

The CRISPR arrays of NZ_CP047809_2

>merge|NZ_CP047809|2|293578-293764|CRT
GGCGGGGCCCCAACATAGAGAATTTCAAAAAGAAATTCTACAGACAATGCAAGTTGGGGTGGGCCCCAACACAGAAGCTGACGAAAAGTCAGCTTACAATAATGTGCAAGTTGGCGGGGCCCCAACATAGTGAAATTGGATTCCCAATTTCTACAGACAATGCAAGTTGGCGGGGCCCCAACATAGA

>NZ_CP047809|2|2|293578-293764|CRT
GGCGGGGCCCCAACATAGA	GAATTTCAAAAAGAAATTCTACAGACAATGCAAGTTG
GGGTGGGCCCCAACACAGA	AGCTGACGAAAAGTCAGCTTACAATAATGTGCAAGTT
GGCGGGGCCCCAACATAGT	GAAATTGGATTCCCAATTTCTACAGACAATGCAAGTT
GGCGGGGCCCCAACATAGA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP047809.1\|WP_000791587.1\|288291_288789_+\|complement-convertase-inhibitor-Efb	unknown	unknown	gnl\|CDD\|289007
NZ_CP047809.1\|WP_000857483.1\|291462_292422_-\|beta-channel-forming-cytolysin	unknown	unknown	gnl\|CDD\|273388
NZ_CP047809.1\|WP_000765708.1\|293094_293241_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP047809.1\|WP_000231632.1\|290752_290986_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP047809.1\|WP_000600047.1\|298979_300470_+\|YfcC-family-protein	unknown	unknown	gnl\|CDD\|224207
NZ_CP047809.1\|WP_000793605.1\|296785_297787_+\|ornithine-carbamoyltransferase	unknown	unknown	gnl\|CDD\|235269
NZ_CP047809.1\|WP_000739563.1\|286453_286855_-\|formyl-peptide-receptor-like-1-inhibitory-protein	unknown	unknown	gnl\|CDD\|171849
NZ_CP047809.1\|WP_001074342.1\|297809_298742_+\|carbamate-kinase	unknown	unknown	gnl\|CDD\|237071
NZ_CP047809.1\|WP_000669537.1\|288942_289293_+\|complement-inhibitor-SCIN-B	unknown	unknown	gnl\|CDD\|371594
NZ_CP047809.1\|WP_000398672.1\|303605_303740_+\|beta-class-phenol-soluble-modulin	unknown	unknown	gnl\|CDD\|368464
NZ_CP047809.1\|WP_000149423.1\|300777_301005_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP047809.1\|WP_001239285.1\|301309_302257_-\|TDT-family-transporter	unknown	unknown	gnl\|CDD\|187765
NZ_CP047809.1\|WP_000584398.1\|287526_288033_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP047809.1\|WP_001802045.1\|293197_293422_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP047809.1\|WP_001791789.1\|286401_286494_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP047809.1\|WP_001245802.1\|302505_302694_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|225382
NZ_CP047809.1\|WP_000041896.1\|293978_294695_-\|superantigen-like-protein-SSL12	unknown	unknown	gnl\|CDD\|171995
NZ_CP047809.1\|WP_001063559.1\|294802_295528_-\|superantigen-like-protein-SSL13	unknown	unknown	gnl\|CDD\|106307
NZ_CP047809.1\|WP_000739523.1\|295622_296348_-\|superantigen-like-protein-SSL14	unknown	unknown	gnl\|CDD\|171855
NZ_CP047809.1\|WP_001032814.1\|289945_290131_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP047809.1\|WP_000791587.1\|288291_288789_+\|complement-convertase-inhibitor-Efb	gnl\|CDD\|289007	pfam12199, efb-c, Extracellular fibrinogen binding protein C terminal. This domain family is found in bacteria, and is approximately 70 amino acids in length. There is a conserved VLK sequence motif. It is the C terminal domain of bacterial extracellular fibrinogen binding protein. It contains a helical motif involved in complement regulation. This motif binds to complement and changes its conformation to a form which cannot activate downstream components of the complement cascade.	5.40265e-27
NZ_CP047809.1\|WP_000857483.1\|291462_292422_-\|beta-channel-forming-cytolysin	gnl\|CDD\|273388	TIGR01002, synergohymenotropic_toxin, beta-channel forming cytolysin. This family of cytolytic pore-forming proteins includes alpha toxin and leukocidin F and S subunits from Staphylococcus aureus, hemolysin II of Bacillus cereus, and related toxins. [Cellular processes, Toxin production and resistance].	4.27434e-141
NZ_CP047809.1\|WP_000793605.1\|296785_297787_+\|ornithine-carbamoyltransferase	gnl\|CDD\|235269	PRK04284, PRK04284, ornithine carbamoyltransferase; Provisional.	0
NZ_CP047809.1\|WP_000600047.1\|298979_300470_+\|YfcC-family-protein	gnl\|CDD\|224207	COG1288, COG1288, Predicted membrane protein [Function unknown].	0
NZ_CP047809.1\|WP_000739563.1\|286453_286855_-\|formyl-peptide-receptor-like-1-inhibitory-protein	gnl\|CDD\|171849	PRK13033, PRK13033, formyl peptide receptor-like 1 inhibitory protein; Reviewed.	3.87075e-77
NZ_CP047809.1\|WP_000669537.1\|288942_289293_+\|complement-inhibitor-SCIN-B	gnl\|CDD\|371594	pfam11546, CompInhib_SCIN, Staphylococcal complement inhibitor SCIN. SCIN is released by Staphylococcus aureus to counteract the host immune defense. The protein binds to and inhibits C3 convertases on the bacterial surface, reducing phagocytosis and blocking downstream effector functions by C3b deposition on its surface. An 18 residue stretch 31-48 is crucial for SCIN activity.	2.0882e-48
NZ_CP047809.1\|WP_000398672.1\|303605_303740_+\|beta-class-phenol-soluble-modulin	gnl\|CDD\|368464	pfam05480, Staph_haemo, Staphylococcus haemolytic protein. This family consists of several different short Staphylococcal proteins, it contains SLUSH A, B and C proteins as well as haemolysin and gonococcal growth inhibitor. Some strains of the coagulase-negative Staphylococcus lugdunensis produce a synergistic hemolytic activity (SLUSH), phenotypically similar to the delta-hemolysin of S. aureus. Gonococcal growth inhibitor from Staphylococcus act on the cytoplasmic membrane of the gonococcal cell causing cytoplasmic leakage and, eventually, death.	6.35158e-13
NZ_CP047809.1\|WP_000739523.1\|295622_296348_-\|superantigen-like-protein-SSL14	gnl\|CDD\|171855	PRK13043, PRK13043, superantigen-like protein; Reviewed.	8.18566e-161
NZ_CP047809.1\|WP_001239285.1\|301309_302257_-\|TDT-family-transporter	gnl\|CDD\|187765	cd09325, TDT_C4-dicarb_trans, C4-dicarboxylate transporters of the Tellurite-resistance/Dicarboxylate Transporter (TDT) family. This subfamily contains bacterial C4-dicarboxylate transporters, which is part of the Tellurite-resistance/Dicarboxylate Transporter (TDT) family. It includes Tellurite resistance protein tehA; the tehA gene encodes an integral membrane protein that has been shown to have efflux activity of quaternary ammonium compounds. TehA protein of Escherichia coli functions as a tellurite-resistance uptake permease.	7.44089e-84
NZ_CP047809.1\|WP_001245802.1\|302505_302694_+\|hypothetical-protein	gnl\|CDD\|225382	COG2826, Tra8, Transposase and inactivated derivatives, IS30 family [DNA replication, recombination, and repair].	0.00787195
NZ_CP047809.1\|WP_000041896.1\|293978_294695_-\|superantigen-like-protein-SSL12	gnl\|CDD\|171995	PRK13350, PRK13350, superantigen-like protein; Reviewed.	1.29441e-152
NZ_CP047809.1\|WP_001063559.1\|294802_295528_-\|superantigen-like-protein-SSL13	gnl\|CDD\|106307	PRK13349, PRK13349, superantigen-like protein; Reviewed.	1.29834e-148
NZ_CP047809.1\|WP_001074342.1\|297809_298742_+\|carbamate-kinase	gnl\|CDD\|237071	PRK12353, PRK12353, putative amino acid kinase; Reviewed.	0

>NZ_CP047809.1|WP_001802045.1|293197_293422_+|hypothetical-protein
MLIQERGLKMTELNNIINSLQSLFESESGYKISKNSGVPYQTVQDLRNGKTKLEDARFRTIIKLYSYYVSLKEH
>NZ_CP047809.1|WP_000765708.1|293094_293241_+|hypothetical-protein
MKLFYIVFLIIIWLNIFLGNEIIHTLTVLITTLYIVNSRKGIKNDRVE
>NZ_CP047809.1|WP_000857483.1|291462_292422_-|beta-channel-forming-cytolysin
MKTRIVSSVTTTLLLGSILMNPVANAADSDINIKTGTTDIGSNTTVKTGDLVTYDKENGMHKKVFYSFIDDKNHNKKLLVIRTKGTIAGQYRVYSEEGANKSGLAWPSAFKVQLQLPDNEVAQISDYYPRNSIDTKEYMSTLTYGFNGNVTGDDTGKIGGLIGANVSIGHTLKYVQPDFKTILESPTDKKVGWKVIFNNMVNQNWGPYDRDSWNPVYGNQLFMKTRNGSMKAADNFLDPNKASSLLSSGFSPDFATVITMDRKASKQQTNIDVIYERVRDDYQLHWTSTNWKGTNTKDKWIDRSSERYKIDWEKEEMTN
>NZ_CP047809.1|WP_000231632.1|290752_290986_-|hypothetical-protein
MVFNDWEINVVYSGEHEVVTNEKSLFVIDEFYDVAIAIYYLDGKLKVAHVNYGSDFTIDVANKVFELNIQNPNVDEH
>NZ_CP047809.1|WP_001032814.1|289945_290131_-|hypothetical-protein
MNKHINKKAAKLLEDYKKVQQRKSKETDRGCLKSVIMLIVLFFLIIFGIVACSTNVNFFFQ
>NZ_CP047809.1|WP_000669537.1|288942_289293_+|complement-inhibitor-SCIN-B
MKFKKYILTGTLALLLSSTGIATIEGNKADASSLDKYLTESQFHDKRIAEELRTLLNKSNVYALAAGSLNPYYKRTIMMNEYRAKAALKKNDFVSMADAKVALEKIYKEIDEIINR
>NZ_CP047809.1|WP_000791587.1|288291_288789_+|complement-convertase-inhibitor-Efb
MKNKLIAKSLLTLAAIGITTTTIASTADASEGYGPREKKPVSINHNIVEYNDGTFKYQSRPKFNSTPKYIKFKHDYNILEFNDGTFEYGARPQFNKPAAKTDATIKKEQKLIQAQNLVREFEKTHTVSAHRKAQKAVNLVSFEYKVKKMVLQERIDNVLKQGLVK
>NZ_CP047809.1|WP_000584398.1|287526_288033_+|hypothetical-protein
MIIKILTILLLLCILSYLVTNRKKPFLFLKTLFMGVVFIFIGYISLAISAVIIYGIIQFITIDFGSFFLMGIILILISSIFQLFIVRLLFRKKNVDLTEVVVLEHLIQWFLVYFAIYQAVNEKMDINDINIDNFQSVFFDVSNLNLVILPTLIISWVTIFNYRMRSYK
>NZ_CP047809.1|WP_000739563.1|286453_286855_-|formyl-peptide-receptor-like-1-inhibitory-protein
MKKNITKTIIASTVIAAGLLTQTNDAKAFFSYEWKGLEIAKNLADQAKKDDERIDKLMKESDKNLTPYKAETVNDLYLIVKKLSQGDVKKAVVRIKDGGPRDYYTFDLTRPLEENRKNIKVVKNGEIDSITWY
>NZ_CP047809.1|WP_001791789.1|286401_286494_-|hypothetical-protein
MLKTVKSTRLLGIKKHTELNSCTPNVRKQC
>NZ_CP047809.1|WP_000041896.1|293978_294695_-|superantigen-like-protein-SSL12
MSKNITKNIILTTTLLLLGTVLPQNQKPVFSFYSEAKAYSIGQDETNINELIKYYTQPHFSFSNKWLYQYDNGNIYVELKRYSWSAHISLWGAESWGNINQLKDRYVDVFGLKDKDTDQLWWSYRETFTGGVTPAAKPSDKTYNLFVQYKDKLQTIIGAHKIYQGNKPVLTLKEIDFRAREALIKNKILYNENRNKGKLKITGGGNNYTIDLSKRLHSDLANVYVKNPNKITVDVLFD
>NZ_CP047809.1|WP_001063559.1|294802_295528_-|superantigen-like-protein-SSL13
MNNNITKKIILSTTLLLLGTASTQFPNTPINSSSEAKAYYINQNETNVNELTKYYSQKYLTFSNSTLWQKDNGTIHATLLQFSWYSHIQVYGPESWGNINQLRNKSVDIFGIKDQETIDSFALSQETFTGGVTPAATSNDKHYKLNVTYKDKAETFTGGFPVYEGNKPVLTLKELDFRIRQTLIKSKKLYNNSYNKGQIKITGADNNYTIDLSKRLPSTDANRYVKKPQNAKIEVILEKSN
>NZ_CP047809.1|WP_000739523.1|295622_296348_-|superantigen-like-protein-SSL14
MKKNIMNKLVLSTALLLLETTSTQLPKTPISFSSEAKAYNISENETNINELIKYYTQPHFSLSGKWLWQKPNGSIHATLQTWVWYSHIQVFGSESWGNINQLRNKYVDIFGTKDEDTVEGYWTYDETFTGGVTPAATSSDKPYRLFLKYSDKQQTIIGGHEFYKGNKPVLTLKELDFRIRQTLIKNKKLYNGEFNKGQIKITADGNNYTIDLSKKLKLTDTNRYVKNPRNAEIEVILEKSN
>NZ_CP047809.1|WP_000793605.1|296785_297787_+|ornithine-carbamoyltransferase
MKNLRNRSFLTLLDFSRQEVEFLLTLSEDLKRAKYIGTEKPMLKNKNIALLFEKDSTRTRCAFEVAAHDQGANVTYLGPTGSQMGKKETTKDTARVLGGMYDGIEYRGFSQRTVETLAEYSGVPVWNGLTDEDHPTQVLADFLTAKEVLKKDYADINFTYVGDGRNNVANALMQGAAIMGMNFHLVCPKELNPTDELLNRCKNIAAENGGNILITDDIDQGVKGSDVIYTDVWVSMGEPDEVWKERLELLKPYQVNKEIMDKTGNPNVIFEHCLPSFHNADTKIGQQIFEKYGIREMEVTDEVFESKASVVFQEAENRMHTIKAVMVATLGEF
>NZ_CP047809.1|WP_001074342.1|297809_298742_+|carbamate-kinase
MAKIVVALGGNALGKSPQEQLELVKNTAKSLVGLITKGHEIVISHGNGPQVGSINLGLNYAAEHNQGPAFPFAECGAMSQAYIGYQLQESLQNELHSIGMDKQVVTLVTQVEVDENDPAFNNPSKPIGLFYNKEEAEQIQKEKGFIFVEDAGRGYRRVVPSPQPISIIELESIKTLIKNDTLVIAAGGGGIPVIREQHDGFKGIDAVIDKDKTSALLGANIQCDQLIILTAIDYVYINFNTENQQPLKTTNVDELKRYIDENQFAKGSMLPKIEAAISFIENNPKGSVLITSLNELDAALEGKVGTVIKK
>NZ_CP047809.1|WP_000600047.1|298979_300470_+|YfcC-family-protein
MILFILTVVAVIATWVIPAGAYSKLSYEPSSQELKIVNPHNQVKKVPGTQQELDKMGVKIKIEQFKSGAINKPVSIPNTYERLKQHPAGPEQITSSMVEGTIEAVDIMVFILVLGGLIGVVQASGSFESGLLALTKKTKGHEFMLIVFVSILMIIGGTLCGIEEEAVAFYPILVPIFIALGYDSIVSVGAIFLASSVGSTFSTINPFSVVIASNAAGTTFTDGLYWRIGACIVGAIFVISYLYWYCKKIKNDPKASYSYEDKDAFEQQWSVLKDDDSAHFTLRKKIILTLFVLPFPIMVWGVMTQGWWFPVMASAFLIFTIIIMFIAGTGKSGLGEKGTVDAFVNGASSLVGVSLIIGLARGINLVLNEGMISDTILHFSSSLVQHMSGPLFIIVLLFIFFCLGFIVPSSSGLAVLSMPIFAPLADTVGIPRFVIVTTYQFGQYAMLFLAPTGLVMATLQMLNMRYSHWFRFVWPVVAFVLIFGGGVLITQVLIYS
>NZ_CP047809.1|WP_000149423.1|300777_301005_+|hypothetical-protein
MTHLTKVLDTLTGICVVLLFSKYFVAYANMVFDWNLRWYLLENIPHLPIILFILMFIFGVPSEMIKDRQRKNNGV
>NZ_CP047809.1|WP_001239285.1|301309_302257_-|TDT-family-transporter
MRLQKAPLVTSGLVLGLLGLGNLLKDLSLTLNAVCGIFAFLIWIHLLCTMIKYFNNVKEQLNSPLVSSVFTTFFMSGFLGTTYLNTFFSNITFINSLITPIWILCLVGIMTHMIIFSIKYLKDFSLENVYPSWTVLFIGIAIAGLTAPVSGYFFIGQLTVIYGFVATCIVLPIVFKRLKAFPLQTSIKPNTSTICAPFSLVAAAYVIAFPKANAFIVIIFLLLAQIFYFYIIIQLPKLLKEPFSPVFSAFTFPLVISATALKNSLPVLMFPDIWKGLLFIEVLLATVIVLRVFIGYLHFFLKKEKQDKFLRNASQ
>NZ_CP047809.1|WP_001245802.1|302505_302694_+|hypothetical-protein
MRNQIQKLLDSDLSSLHISKQTGVPQSTIHRMRKNERSLDNMSLKNAELLYKFANSIFSNEN
>NZ_CP047809.1|WP_000398672.1|303605_303740_+|beta-class-phenol-soluble-modulin
MEGLFNAIKDTVTAAINNDGAKLGTSIVSIVENGVGLLGKLFGF

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Crispr_ID: NZ_CP047809_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP047809_3

948771-948997

Orphan

Consensus_repeat	Method
GGGCCCCAACACAGAAGCTGGCCAATAGTCAGCTTTCAATAATGTGCAAGTTGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP047809_3

>merge|NZ_CP047809|3|948771-948997|CRISPRCasFinder
GGGCCCCAACATAGAAGCTGGCCAATAGTTAGCTTTCAATAATGTGCAAGTTGGGGTAAGGGCCCCAACACAGAAGCTGGCCAATAGTCAGCTTTCAATAATGTGCAAGTTGGGGTAAGGGCCCCAACACAGAGAATTTCGAAAAGAAATTCTACAGACAATGCAAGTTGGCGGGGCCCCAACACAGAAGCTGGCCAATAGTCAGCTTTCAATAATGTGCAAGTTGG

>NZ_CP047809|3|1|948771-948997|CRISPRCasFinder
GGGCCCCAACATAGAAGCTGGCCAATAGTTAGCTTTCAATAATGTGCAAGTTGG	GGTAAGGGCCCCAACACAGAAGCTGGCCAATAGTCAGCTTTCAATAATGTGCAAGTTGGGGTAAGGGCCCCAACACAGAGAATTTCGAAAAGAAATTCTACAGACAATGCAAGTTGGCG
GGGCCCCAACACAGAAGCTGGCCAATAGTCAGCTTTCAATAATGTGCAAGTTGG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP047809.1\|WP_001051860.1\|949376_949799_-\|YtxH-domain-containing-protein	unknown	unknown	gnl\|CDD\|378938
NZ_CP047809.1\|WP_000163826.1\|942447_942759_+\|peptidase	unknown	unknown	gnl\|CDD\|227871
NZ_CP047809.1\|WP_001048368.1\|939326_939923_-\|DUF4479-domain-containing-protein	unknown	unknown	gnl\|CDD\|234804
NZ_CP047809.1\|WP_000836465.1\|960846_961158_-\|rhodanese-like-domain-containing-protein	unknown	unknown	gnl\|CDD\|238089
NZ_CP047809.1\|WP_161575686.1\|953960_960521_-\|LPXTG-anchored-repetitive-surface-protein-SasC	unknown	unknown	gnl\|CDD\|275089
NZ_CP047809.1\|WP_050956550.1\|961179_963594_-\|leucine--tRNA-ligase	unknown	unknown	gnl\|CDD\|234743
NZ_CP047809.1\|WP_000285019.1\|952575_953844_+\|NAD(P)/FAD-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|367519
NZ_CP047809.1\|WP_000811163.1\|940908_941220_-\|thioredoxin-family-protein	unknown	unknown	gnl\|CDD\|239245
NZ_CP047809.1\|WP_000265417.1\|947047_948457_-\|Mn(2+)-dependent-dipeptidase-Sapep	unknown	unknown	gnl\|CDD\|235988
NZ_CP047809.1\|WP_001024576.1\|941284_942361_-\|M42-family-metallopeptidase	unknown	unknown	gnl\|CDD\|349906
NZ_CP047809.1\|WP_000434765.1\|944854_945646_-\|phosphotransferase-family-protein	unknown	unknown	gnl\|CDD\|223584
NZ_CP047809.1\|WP_001266157.1\|944195_944840_-\|tRNA-(guanosine(46)-N7)-methyltransferase-TrmB	unknown	unknown	gnl\|CDD\|234649
NZ_CP047809.1\|WP_000004335.1\|950507_952169_-\|polysaccharide-biosynthesis-protein	unknown	unknown	gnl\|CDD\|240529
NZ_CP047809.1\|WP_000764419.1\|966125_966689_+\|methyltransferase-domain-containing-protein	unknown	unknown	gnl\|CDD\|377744
NZ_CP047809.1\|WP_000689580.1\|942883_943726_-\|MBL-fold-metallo-hydrolase	unknown	unknown	gnl\|CDD\|293814
NZ_CP047809.1\|WP_161575687.1\|965175_966129_+\|TIGR01212-family-radical-SAM-protein	unknown	unknown	gnl\|CDD\|224163
NZ_CP047809.1\|WP_050956548.1\|949815_950511_-\|rRNA-pseudouridine-synthase	unknown	unknown	gnl\|CDD\|224108
NZ_CP047809.1\|WP_001025061.1\|963884_965066_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|340887
NZ_CP047809.1\|WP_000411085.1\|946195_947044_-\|D-amino-acid-transaminase	unknown	unknown	gnl\|CDD\|130191
NZ_CP047809.1\|WP_001091387.1\|939951_940809_-\|DUF1444-domain-containing-protein	unknown	unknown	gnl\|CDD\|237463

Protein	Function_ID	Function_description	E-value
NZ_CP047809.1\|WP_001051860.1\|949376_949799_-\|YtxH-domain-containing-protein	gnl\|CDD\|378938	pfam12732, YtxH, YtxH-like protein. This family of proteins is found in bacteria. Proteins in this family are typically between 100 and 143 amino acids in length. The N-terminal region is the most conserved. Proteins is this family are functionally uncharacterized.	0.000542053
NZ_CP047809.1\|WP_000163826.1\|942447_942759_+\|peptidase	gnl\|CDD\|227871	COG5584, COG5584, Predicted small secreted protein [Function unknown].	4.78628e-46
NZ_CP047809.1\|WP_001048368.1\|939326_939923_-\|DUF4479-domain-containing-protein	gnl\|CDD\|234804	PRK00629, pheT, phenylalanyl-tRNA synthetase subunit beta; Reviewed.	7.47641e-48
NZ_CP047809.1\|WP_000836465.1\|960846_961158_-\|rhodanese-like-domain-containing-protein	gnl\|CDD\|238089	cd00158, RHOD, Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein. The cysteine containing enzymatically active version of the domain is also found in the Cdc25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and certain stress proteins such as senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions (no active site cysteine) are also seen in dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases, where they are believed to play a regulatory role in multidomain proteins.	1.46882e-25
NZ_CP047809.1\|WP_161575686.1\|953960_960521_-\|LPXTG-anchored-repetitive-surface-protein-SasC	gnl\|CDD\|275089	TIGR04263, cell_wall_surface_anchor_family_protein, SasC/Mrp/FmtB intercellular aggregation domain. This domain, about 375 amino acids long on average, occurs only in Staphylococcus and Streptococcus. It occurs as a non-repetitive N-terminal domain of LPXTG-anchored surface proteins, including SasC, Mrp, and FmtB. This region in SasC was shown to be involved in cell aggregation and biofilm formation, which may explain the methicillin resistance seen for Mrp and FmtB.	9.4437e-115
NZ_CP047809.1\|WP_050956550.1\|961179_963594_-\|leucine--tRNA-ligase	gnl\|CDD\|234743	PRK00390, leuS, leucyl-tRNA synthetase; Validated.	0
NZ_CP047809.1\|WP_000285019.1\|952575_953844_+\|NAD(P)/FAD-dependent-oxidoreductase	gnl\|CDD\|367519	pfam03486, HI0933_like, HI0933-like protein.	0
NZ_CP047809.1\|WP_000811163.1\|940908_941220_-\|thioredoxin-family-protein	gnl\|CDD\|239245	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functional TRXs have been reported in most organisms; in eukaryotes, they are located in the cytoplasm and the mitochondria. Higher plants contain more types (at least 20 TRX genes have been detected in the genome of Arabidopsis thaliana), two of which (types f amd m) are located in the same compartment, the chloroplast. Also included in the alignment are TRX-like domains which show sequence homology to TRX but do not contain the redox active CXXC motif. Group II proteins, in addition to either a redox active TRX or a TRX-like domain, also contain additional domains, which may or may not possess homology to known proteins.	2.34221e-24
NZ_CP047809.1\|WP_000265417.1\|947047_948457_-\|Mn(2+)-dependent-dipeptidase-Sapep	gnl\|CDD\|235988	PRK07318, PRK07318, dipeptidase PepV; Reviewed.	0
NZ_CP047809.1\|WP_001024576.1\|941284_942361_-\|M42-family-metallopeptidase	gnl\|CDD\|349906	cd05656, M42_Frv, M42 Peptidase, endoglucanases. Peptidase M42 family, Frv (Frv Operon Protein; Endo-1 4-Beta-Glucanase; Cellulase Protein; Endoglucanase; Endo-1 4-Beta-Glucanase Homolog; Glucanase; EC. 3.2.1.4) subfamily. Frv is a co-catalytic metallopeptidase, found in archaea and bacteria, including Pyrococcus horikoshii tetrahedral shaped phTET1 (DAPPh1; FrvX; PhDAP aminopeptidase; PhTET aminopeptidase; deblocking aminopeptidase), phTET2 (DAPPh2) and phTET3 (DAPPh3), Haloarcula marismortui TET (HmTET) as well as Bacillus subtilis YsdC. All of these exhibit aminopeptidase and deblocking activities. The HmTET is a broad substrate aminopeptidase capable of degrading large peptides. PhTET2, which shares 24% identity with HmTET, is a cobalt-activated peptidase and possibly a deblocking aminopeptidase, assembled as a 12-subunit tetrahedral dodecamer, while PhTET1 can be alternatively assembled as a tetrahedral dodecamer or as an octahedral tetracosameric structure. The active site in such a self-compartmentalized complex is located on the inside such that substrate sizes are limited, indicating function as possible peptide scavengers. PhTET2 cleaves polypeptides by a nonprocessive mechanism, preferring N-terminal hydrophobic or uncharged polar amino acids. Streptococcus pneumoniae PepA (SpPepA) also forms dodecamer with tetrahedral architecture, and exhibits selective substrate specificity to acidic amino acids with the preference to glutamic acid, with the substrate binding S1 pocket containing an Arg allows electrostatic interactions with the N-terminal acidic residue in the substrate. The YsdC gene is conserved in a number of thermophiles, archaea and pathogenic bacterial species; the closest structural homolog is Thermotoga maritima FrwX (34% identity), which is annotated as either a cellulase or an endoglucanase, and is possibly involved in polysaccharide biosynthesis or degradation.	2.36515e-152
NZ_CP047809.1\|WP_000434765.1\|944854_945646_-\|phosphotransferase-family-protein	gnl\|CDD\|223584	COG0510, ycfN, Thiamine kinase and related kinases [Coenzyme transport and metabolism].	5.2385e-83
NZ_CP047809.1\|WP_001266157.1\|944195_944840_-\|tRNA-(guanosine(46)-N7)-methyltransferase-TrmB	gnl\|CDD\|234649	PRK00121, trmB, tRNA (guanine-N(7)-)-methyltransferase; Reviewed.	1.9831e-87
NZ_CP047809.1\|WP_000004335.1\|950507_952169_-\|polysaccharide-biosynthesis-protein	gnl\|CDD\|240529	cd13124, MATE_SpoVB_like, Stage V sporulation protein B, also known as Stage III sporulation protein F, and related proteins. The integral membrane protein SpoVB has been implicated in the biosynthesis of the peptidoglycan component of the spore cortex in Bacillus subtilis. This model represents a subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins. Proteins from the MATE family are involved in exporting metabolites across the cell membrane and are often responsible for multidrug resistance (MDR).	1.63186e-123
NZ_CP047809.1\|WP_000764419.1\|966125_966689_+\|methyltransferase-domain-containing-protein	gnl\|CDD\|377744	pfam06962, rRNA_methylase, Putative rRNA methylase. This family contains a number of putative rRNA methylases. Note that many family members are hypothetical proteins.	2.38341e-67
NZ_CP047809.1\|WP_000689580.1\|942883_943726_-\|MBL-fold-metallo-hydrolase	gnl\|CDD\|293814	cd07728, YtnP-like_MBL-fold, Bacillus subtilis YtnP and related proteins; MBL-fold metallo hydrolase domain. Bacillus subtilis YtnP inhibits the signaling pathway required for the streptomycin production and development of aerial mycelium in Streptomyces griseus. Members of this subgroup belong to the MBL-fold metallo-hydrolase superfamily which is comprised mainly of hydrolytic enzymes which carry out a variety of biological functions.	1.38932e-155
NZ_CP047809.1\|WP_161575687.1\|965175_966129_+\|TIGR01212-family-radical-SAM-protein	gnl\|CDD\|224163	COG1242, COG1242, Predicted Fe-S oxidoreductase [General function prediction only].	0
NZ_CP047809.1\|WP_050956548.1\|949815_950511_-\|rRNA-pseudouridine-synthase	gnl\|CDD\|224108	COG1187, RsuA, 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases [Translation, ribosomal structure and biogenesis].	2.63099e-93
NZ_CP047809.1\|WP_001025061.1\|963884_965066_-\|MFS-transporter	gnl\|CDD\|340887	cd17329, MFS_MdtH_MDR_like, Multidrug resistance protein MdtH and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily. This family is composed of Escherichia coli MdtH and similar multidrug resistance (MDR) transporters from bacteria and archaea, many of which remain uncharacterized. MDR transporters are drug/H+ antiporters (DHA) that mediate the efflux of a variety of drugs and toxic compounds, and confer resistance to these compounds. MdtH confers resistance to norfloxacin and enoxacin. MdtH-like MDR transporters belong to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	2.66072e-94
NZ_CP047809.1\|WP_000411085.1\|946195_947044_-\|D-amino-acid-transaminase	gnl\|CDD\|130191	TIGR01121, D-alanine_aminotransferase, D-amino acid aminotransferase. This enzyme is a homodimer. The pyridoxal phosphate attachment site is the Lys at position 146 of the seed alignment, in the motif Cys-Asp-Ile-Lys-Ser-Leu-Asn. Specificity is broad for various D-amino acids, and differs among members of the family; the family is designated equivalog, but with this caveat attached. [Energy metabolism, Amino acids and amines].	6.28892e-159
NZ_CP047809.1\|WP_001091387.1\|939951_940809_-\|DUF1444-domain-containing-protein	gnl\|CDD\|237463	PRK13668, PRK13668, hypothetical protein; Provisional.	2.02352e-168

>NZ_CP047809.1|WP_000265417.1|947047_948457_-|Mn(2+)-dependent-dipeptidase-Sapep
MWKEKVQQYEDQIINDLKGLLAIESVRDDAKASEDAPVGPGPRKALDYMYEIAHRDGFTTHDVDHIAGRIEAGKGNDVLGILCHVDVVPAGDGWDSNPFEPVVTEDAIIARGTLDDKGPTIAAYYAIKILEDMNVDWKKRIHMIIGTDEESDWKCTDRYFKTEEMPTLGFAPDAEFPCIHGEKGITTFDLVQNKLTEDQDEPDYELITFKSGERYNMVPDHAEARVLVKENMTDVIQDFEYFLEQNHLQGDSTVDSGILVLTVEGKAVHGMDPSIGVNAGLYLLKFLASLNLDNNAQAFVAFSNRYLFNSDFGEKMGMKFHTDVMGDVTTNIGVITYDNENAGLFGINLRYPEGFEFEKAMDRFANEIQQYGFEVKLGKVQPPHYVDKNDPFVQKLVTAYRNQTNDMTEPYTIGGGTYARNLDKGVAFGAMFSDSEDLMHQKNEYITKKQLFNATSIYLEAIYSLCVEE
>NZ_CP047809.1|WP_000411085.1|946195_947044_-|D-amino-acid-transaminase
MEKIFLNGEFVSPSEAKVSYNDRGYVFGDGIYEYIRVYNGKLFTVTEHYERFLRSANEIGLDLNYSVEELIELSRKLVDMNQIETGAIYIQATRGVAERNHSFPTPEVEPAIVAYTKSYDRPYDHLENGVNGVTVEDIRWLRCDIKSLNLLGNVLAKEYAVKYNAVEAIQHRGETVTEGSSSNAYAIKDGVIYTHPINNYILNGITRIVIKKIAEDYNIPFKEETFTVDFLKNADEVIVSSTSAEVTPVIKLDGEPVNDGKVGPITRQLQEGFEKYIESHSI
>NZ_CP047809.1|WP_000434765.1|944854_945646_-|phosphotransferase-family-protein
MEQFYQLGWTLDSAGGASGEAYMAEQDGQKLFLKRNSNPFIAALSAEGIVPKLVWTKRIETGEVVTAQHWKNGRELSSNEMKQTRVAHLLKKIHNSRPLLSMLKRMEMEPITPEIMLNKINASLSREVLTHHIVRKSLTYLEEHIPSLDSRFFTVVHGDVNHNNWLLSDRDELFLVDWEGAMIADPAIDIGMLLYNYVPQQQWSEWLETYGVQESLNLNKRMKWYTVIQSIGLVQWYEEQKRYKDMNTWLKFLNEVMNSNMFI
>NZ_CP047809.1|WP_001266157.1|944195_944840_-|tRNA-(guanosine(46)-N7)-methyltransferase-TrmB
MRVRYKPWAEDYLKDHPELVDMDGQHAGKMTEWFDKTQPIHIEIGSGMGQFITTLAAQNPHINYISMEREKSIVYKVLDKVKEMGLTNLKIICNDAIELNEYFKDGEVSRIYLNFSDPWPKNRHAKRRLTYHTFLALYQQILNDEGDLHFKTDNRGLFAYSLESMSQFGMYFTKINLNLHQEDDGSNILTEYEKKFSDKGSRIYRMEAKFHSQK
>NZ_CP047809.1|WP_000689580.1|942883_943726_-|MBL-fold-metallo-hydrolase
MKIGDISIHYLNGGNTKMDGGAMFGVVPKPLWSKQYNANERNQINLPTHPILIQTAQYNLIIDAGIGNGKLSEKQLRNFGVDEESHIIADLANYNLTPKDIDYVLMTHMHFDHAAGLTDQAGHAIFENAIHVVQQDEWHEFIAPNIRSKSTYWDKNKGDYSNKLILFEKHFEPVLGIKMQHSGGHSFGHTIITIESQGDKAVHMGDIFPTTAHKNPLWVTAYDDYPMQSIREKERMIPYFIQQQYWFLFYHDENYFAVKYSDNGENIDAYILRETLVDNN
>NZ_CP047809.1|WP_000163826.1|942447_942759_+|peptidase
MTKLKYIIPTIIAVAIVIISTISIIQFINRKRYNPVKVLNEVKSYFMNVKGSYIVYEPFVHPETDKYRLVYQGGITTIKNGQNIHYDFYADAYTGEVINIVER
>NZ_CP047809.1|WP_001024576.1|941284_942361_-|M42-family-metallopeptidase
MNINKKVTLQRIQTLTELHGAPGFEEEVKNYMTQQMAPYVDEFIENRMGGFFGVKKSKNPNAKRVMIAAHMDEIGFMITNITKNGMIQFTNLGGVANDIWQGQRLVIKNRNGDKIIGVVSNIPKHFRTGSEGAPEIKDLTLDIGAQNEDEVRERGIDIGDTIVPHTPFTQLSEHRYSAKAWDNRYGCVLAIEILELLKDIELDVDLYVGANVQEEVGLRGAKASAEMIDPDVAFVVDCSPANDVKGNQPLSGELGKGTLIRIKDGTMILKPVFRDYLLKLVEAHDIEHQYYMSPGGTDGGEIHKANIGIPTAVIGVCARYIHSTDSVFDIRDYFAARSLLSEAICNLDNNQIETLQYK
>NZ_CP047809.1|WP_000811163.1|940908_941220_-|thioredoxin-family-protein
MKQLESEQQFESLKQGATVFEFTAGWCPDCRVIEPDLPELEARYPMFDFVSVDRDKFMDICIENGIMGIPSFLVYKNGELLGSYIGKERKSIEQIDAFLAQYV
>NZ_CP047809.1|WP_001091387.1|939951_940809_-|DUF1444-domain-containing-protein
MNTFQMRDKLKERLSHLDVDFKFNREEETLRIYRTDNNKGITIKLNAIVAKYEDKKEKIVDEIVYYVDEAIAQMADKTLESISSSQIMPVIRATSFDKKTKQGVPFIYDEHTAETAVYYAVDLGKSYRLIDESMLEDLKLTEQQIREMSLFNVRKLSNSYTTDEVKGNIFYFINSNDGYDASRILNTAFLNEIEAQCQGEMLVAVPHQDVLIIADIRNKTGYDVMAHLTMEFFTKGLVPITSLSFGYKQGHLEPIFILGKNNKQKRDPNVIQRLEANRRKFNKDK
>NZ_CP047809.1|WP_001048368.1|939326_939923_-|DUF4479-domain-containing-protein
MNLFYNPKYVGDVAFLQIEPVEGELNYNKKGNVVEITNEGNVVGYNIFEISKDITIEEKGHIKLTDELVNVFQKRISEAGFDYKLNADLSPKFVVGYVETKDKHPDADKLSVLNVNVGNDTLQIVCGAPNVEAGQKVVVAKVGAVMPSGMVIKDAELRGVASSGMICSMKELNLPNAPEEKGIMVLNDSYEIGQAFFE
>NZ_CP047809.1|WP_001051860.1|949376_949799_-|YtxH-domain-containing-protein
MAKGNLFKAILGIGGAVAAVLVTRKDSRDKLKAEYNKYKQDPQSYKDNAKDKATQLGTIANETIKEVKTNPKEYANRLKNNPKAFFKEEKSKFTEYDNKTDESIEKGKFDDEGGAAPNNNLRIVTEEDLKKNKNALSDKE
>NZ_CP047809.1|WP_050956548.1|949815_950511_-|rRNA-pseudouridine-synthase
MRIDKILANMGVGTRNEVKQLLKKGLVNVNEQVIKSPKTHIEPENDKITVRGELIEYIENVYIMLNKPKGYISATEDHHSKTVIDLIPEYEHLNIFPVGRLDKDTEGLLLITNDGDFNHELMSPNKHVSKKYEVISANPITEDDIQAFKEGVTLTDGKVKPAILTYIDNQTSHVTIYEGKYHQVKRMFHSIQNEVLHLRRIKIADLELDSNLDSGEYRLLTENDFDKLNYK
>NZ_CP047809.1|WP_000004335.1|950507_952169_-|polysaccharide-biosynthesis-protein
MSESKEMVRGTFLITISILITKVLGVLFIIPFNYLIGGQENMAPFTYAYAPYNIAIAVATAGVPLAASKYVAKYNAIGAYKVSQKFYKSSFIVMSITGVLGFLVLYFLAPYISELTLARNIHDKNGWSVDDITWIIRIISMVVIFIPVLATWRGIFQGYKSMGPTAVSEVTEQIARVIFILIGSYLVLNVFDGSILLANGIATFAAAVGAIIGIFTLWYYWRKRKHNIDRMVESDYTDIDVSYGKMYKEIIAYSIPFVIVSLNYPLFNLVDQFTHNGALSLVGIPSQLQDIFFNMLNMSTNKIVMIPTSLSAGFAVSLIPYITKTFAEGRLHEMHHQIRTSIGVLMFITVPASIGIMALAQPLFTVFYGYDPIVLGHDPNHDGSRLLFYYAPVAILISLLSVTASMLQGIDKQKLTVYVILASVVIKLALNYPLIMLFHTPGAILSTSIALLFAIGCNFYILKKYAKFKFSYSWIHFAKIFLYSFIMMLGVELVFFLANLFLEPTKLGYLIIIILGVTVGILIYGTITIKTRLADEFLGEIPEKLRRRVRFLR
>NZ_CP047809.1|WP_000285019.1|952575_953844_+|NAD(P)/FAD-dependent-oxidoreductase
MYQTIIIGGGPSGLMAAVAASEQSSSVLLIEKKKGLGRKLKISGGGRCNVTNRLPYAEIIKNIPGNGKFLYSPFSIFDNESIIDFFESRGVKLKEEDHGRMFPVSNKAQDVVDTLVTTIERQHVTIKEEEAVSRIEVNTDQTFTVHTQNNSYESHSLVIATGGTSVPQTGSTGDGYKFAQDLGHTITELFPTEVPITSAEPFIKSNRLKGLSLKDVELSVLKKNGKKRISHQMDMLFTHFGISGPAALRCSQFVYKEQKNQKTQHISMAIDAFPELNHEQLKQHITSLLSDTPDKIIKNSLHGLIEERYLLFMLEQAGIDENTTSHHLSNQQLNDLVNMFKGFVFKVNGTLPIDKAFVTGGGVSLKEIQPKTMMSKLVPGLFLCGEVLDIHGYTGGYNITSALVTGHVAGLYAGHYSHASME
>NZ_CP047809.1|WP_161575686.1|953960_960521_-|LPXTG-anchored-repetitive-surface-protein-SasC
MNLLKKNKYSIRKYKVGIFSTLIGTVLLLSNPNGAQALTTDNNVQSDTNQATPVNSQDKDVANNRGLANSAQNTPNQSATTNQATNQALVNHNNGSIVNQATPTSVQSSTPSAQNNNHTDGNTTATETVSNANNNDVVSNNTALNVPTKTNENGSGGHLTLKEIQEDVRHSSNKPELVAIAEPASNRPKKRSRRAAPADPNATPADPAAAAVGNGGAPVAITAPYTPTTDPNANNAGQNAPNEVLSFDDNGIRPSTNRSVPTVNVVNNLPGFTLINGGKVGVFSHAMVRTSMFDSGDNKNYQAQGNVIALGRIHGTDTNDHGDFNGIEKALTVNPNSELIFEFNTMTTKNGQSATNVIIKNADTDDTIAEKTVEGGPTLRLFKVPDNVRNLKIQFVPKNDAITDARGIYQLKDGYKYYSFVDSIGLHSGSHVFVERRTMDPTATNNKEFTVTTSLKNNGNSGASLDTNDFVYQVQLPEGVEYVNNSLTKDFPSNNSGVDVNDMNVTYDAANRVITIKSTGGGTANSPARLMPDKILDLRYKLRVNNVPTPRTVTFNETLTYKTYTQDFINSAAESHTVSTNPYTIDIIMNKDALQAEVDRRIQQADYTFASLDIFNGLKRRAQTILDENRNNVPLNKRVSQAYIDSLTNQMQHTLIRSVDAENAVNKKVDQMEDLVNQNDELTDEEKQAAIQVIEEHKNEIIGNIGDQTTDDGVTRIKDQGIQTLSGDTATPVVKPNAKKAIRDKATKQREIINATPDATEDEIQDALNQLATDETDAIDNVTNATTNADVETAKNNGINTIGAVVPQVTHKKAARDAINQATATKRQQINSNREATQEEKNAALNELTQATNHALEQINQATTNANVDNAKGDGLNAINPIAPVTVVKQAARDAVSHDAQQHIAEINANPDATQEERQAAIDKVNAAVTAANTNILNANTNADVEQVKTNAIQGIQAITPATKVKTDAKNAIDKSAETQHNTIFNNNDATLEEQQAAQQLLDQAVATAKQNINAADTNQEVAQAKDQGTQNIVVIQPATQVKTDTRNVVNDKAREAITNINATTGATREEKQEAINRVNTLKNRALTDIGVTSTTAMVNSIRDDAVNQIGAVQPHVTKKQTATGVLNDLATAKKQEINQNTNATTEEKQVALNQVDQELATAINNINQADTNAEVDQAQQLGTKAINAIQPNIVKKPAALAQINQHYNAKLAEINATPDATNDEKNAAINTLNQDRQQAIESIKQANTNAEVDQAATVAENNIDAVQVDVVKKQAARDKITAEVAKRIEAVKQTPNATDEEKQAAVNQINQLKDQAINQINQNQTNDQVDTTTNQAVNAIDNVEAEVVIKPKAIADIEKAVKEKQQQIDNSLDSTDNEKEVASQALAKEKEKALAAIDQAQTNSQVNQAATNGVSAIKIIQPETKVKPAAREKINQKANELRAKINQDKEATAEERQVALDKINEFVNQAMTDITNNRTNQQVDDTTSQALDSIALVTPDHIVRAAARDAVKQQYEAKKREIEQAEHATDEEKQVALNQLANNEKRALQNIDQAIANNDVKRVETNGIATLKGVQPHIVIKPEAQQAIKASAENQVESIKDTPHATVDELDEANQLISDTLKQAQQEIENTNQDAAVTDVRNQTIKAIEQIKPKVRRKRAALDSIEENNKNQLDAIRNTLDTTQDERDVAIDTLNKIVNTIKNDIAQNKTNAEVDRTETDGNDNIKVILPKVQVKPAARQSVGVKAEAQNALIDQSDLSTEEERLAAKHLVEQALNQAIDQINHADKTAQVNQDSINAQNIISKIKPATTVKATALQQIQNIATNKINLIKANNEATDEEQNIAIAQVEKELIKAKQQIASAVTNADVAYLLHDEKNEIREIEPVINRKASAREQLTTLFNDKKQAIEANIQATVEERNSILAQLQNIYDTAIGQIDQDRSNAQVDKTASLNLQTIHDLDVHPIKKPDAEKTINDDLARVTALVQNYRKVSNRNKADALKAITALKLQMDEELKTARTNADVDAVLKRFNVALSDIEAVITEKENSLLRIDNIAQQTYAKFKAIATPEQLAKVKVLIDQYVADGNRMIDEDATLNDIKQHTQFIVDEILAIKLPAEATKVSPKEIQPAPKVCTPIKKEETHESRKVEKELPNTGSEGMDLPLKEFALITGAALLARRRTKNEKES
>NZ_CP047809.1|WP_000836465.1|960846_961158_-|rhodanese-like-domain-containing-protein
MKSITTDELKNKLLESKPVQIVDVRTDEETAMGYIPNAKLIPMDTIPDNLNSFNKNEIYYIVCAGGVRSAKVVEYLEANGIDAVNVEGGMHAWGDEGLEIKSI
>NZ_CP047809.1|WP_050956550.1|961179_963594_-|leucine--tRNA-ligase
MNYNHNQIEKKWQDYWDENKTFKTNDNLGQKKFYALDMFPYPSGAGLHVGHPEGYTATDIISRYKRMQGYNVLHPMGWDAFGLPAEQYALDTGNDPREFTKKNIQTFKRQIKELGFSYDWDREVNTTDPEYYKWTQWIFIQLYNKGLAYVDEVAVNWCPALGTVLSNEEVIDGVSERGGHPVYRKPMKQWVLKITEYADQLLADLDDLDWPESLKDMQRNWIGRSEGAKVSFDVDNTEGKVEVFTTRPDTIYGASFLVLSPEHALVNSITTDEYKEKVKAYQTEASKKSDLERTDLAKDKSGVFTGAYATNPLSGEKVQIWIADYVLSTYGTGAIMAVPAHDDRDYEFAKKFDLPIIEVIEGGNVEEAAYTGEGKHINSGELDGLENEAAITKAIQLLEQKGAGEKKVNYKLRDWLFSRQRYWGELIPVIHWEDGTMTTVPEEELPLLLPETDEIKPSGTGESPLANIDSFVNVVDEKTGMKGRRETNTMPQWAGSCWYYLRYIDPKNENMLADPEKLKHWLPVDLYIGGVEHAVLHLLYARFWHKVLYDLAIVPTKEPFQKLFNQGMILGEGNEKMSKSKGNVINPDDIVQSHGADTLRLYEMFMGPLDAAIAWSEKGLDGSRRFLDRVWRLMVNEDGTLSSKIVTTNNKSLDKVYNQTVKKVTEDFETLGFNTAISQLMVFINECYKVDEVYKPYIEGFVKMLAPIAPHIGEELWSKLGHEESITYQPWPTYDEALLVDDEVEIVVQVNGKLRAKIKIAKDTSKEEMQEIALSNDNVKASIEGKDIMKVIAVPQKLVNIVAK
>NZ_CP047809.1|WP_001025061.1|963884_965066_-|MFS-transporter
MNIPKSVWWLVIGMALNITGSSFLWPLNTIYMKQELGKSLTVAGLVLMINSFGMVIGNLLGGSLFDKLGGYKTILIGTFTCLCSTTLLNFFHGWPWYAVWLVMLGFGGGMIIPAIYAMAGAVWPNGGRQTFNAIYLAQNIGVAVGAAMGGFVAEFSFNYIFLANLIMYVVFALVAVTQFNIEINAKVKYPTHLDITGKKNKARFISLVLICAMFAICWVAYIQWESTIASFTQSINISMAQYSVLWTINGIMILVAQPLIKPILYLLKGNLKKQMFVGIIIFMLSFFVTSFAENFTIFVVGMIILTFGEMFVWPAVPTIANQLAPDGKQGQYQGFVNSAATVGKAFGPFLGGVLVDAFNMRMMFIGMMLLLVFALILLMVFKENNTQPKKIDA
>NZ_CP047809.1|WP_161575687.1|965175_966129_+|TIGR01212-family-radical-SAM-protein
MGNHFQYAFENKRYHTWNYHLKNKFGQKIFKVALDGGFDCPNRDGTVAHGGCTFCSAAGSGDFAGNRADSIAVQFKEIKEKMHEKWHEGKYIAYFQAFTNTHAPVEVLKEKFEPVLKEPGVVGLSIGTRPDCLPDDVVEYLADLNQRTYLWVELGLQTIHQSTSDLINRAHDMKTYYDGVAKLRKHNINVCTHIINGLPGEDYDMMMATAKEVAQMDVQGIKIHLLHLLKGTPMVKQYDKGLLTFMTQEEYTNLVVDQLEVIPPEMIVHRITGDGPIDIMVGPMWSVNKWEVLNGIDAELACRNSYQGLRYKSKVKQ
>NZ_CP047809.1|WP_000764419.1|966125_966689_+|methyltransferase-domain-containing-protein
MKLERILPFSKTLIKQHITPESIVVDATCGNGNDTLFLAEQVPEGHVYGFDIQDLALENTRDKVKDFNHVSLIKDGHENIEHHINDAHKGHIDAAIFNLGYLPKGDKSIVTKPDTTIQAINSLLSLMSIEGIIVLVIYHGHSEGQIEKHALLDYLSTLDQKHAQVLQYQFLNQRNHAPFICAIEKIS

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Click the colored protein region to show detailed information

Crispr_ID: NZ_CP047809_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP047809_4

1201438-1201526

Orphan

Consensus_repeat	Method
GTTTTTGACTGACTTCTCAATCA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP047809_4

>merge|NZ_CP047809|4|1201438-1201526|CRISPRCasFinder
GTTTTTGACTGACTTCTCAATCAATTTATAACTTTATTATACATAATCGTTTTTCTTTTGCAATAGTTTTTCGACTGACTTCTCAATCA

>NZ_CP047809|4|2|1201438-1201526|CRISPRCasFinder
GTTTTTGACTGACTTCTCAATCA	ATTTATAACTTTATTATACATAATCGTTTTTCTTTTGCAATAG
TTTTTCGACTGACTTCTCAATCA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP047809.1\|WP_001019811.1\|1196227_1196869_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|374630
NZ_CP047809.1\|WP_000179346.1\|1202280_1203453_+\|site-specific-integrase	unknown	unknown	gnl\|CDD\|271189
NZ_CP047809.1\|WP_000708434.1\|1200736_1200883_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP047809.1\|WP_000867960.1\|1208811_1209597_+\|carbon-nitrogen-family-hydrolase	unknown	unknown	gnl\|CDD\|143607
NZ_CP047809.1\|WP_000917289.1\|1205213_1205498_-\|co-chaperone-GroES	unknown	unknown	gnl\|CDD\|178988
NZ_CP047809.1\|WP_094754105.1\|1197792_1199262_-\|virulence-associated-protein-E	unknown	unknown	gnl\|CDD\|283041
NZ_CP047809.1\|WP_000197635.1\|1205672_1206416_+\|CPBP-family-intramembrane-metalloprotease	unknown	unknown	gnl\|CDD\|376806
NZ_CP047809.1\|WP_000522384.1\|1207824_1208451_+\|nitroreductase-family-protein	unknown	unknown	gnl\|CDD\|226090
NZ_CP047809.1\|WP_161575700.1\|1199278_1200148_-\|mobile-element-associated-protein	unknown	unknown	gnl\|CDD\|214926
NZ_CP047809.1\|WP_001549197.1\|1210193_1210328_-\|delta-lysin-family-phenol-soluble-modulin	unknown	unknown	gnl\|CDD\|173213
NZ_CP047809.1\|WP_001105707.1\|1210563_1211133_+\|accessory-gene-regulator-AgrB	unknown	unknown	gnl\|CDD\|214819
NZ_CP047809.1\|WP_000153640.1\|1201201_1201420_-\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|197775
NZ_CP047809.1\|WP_000998179.1\|1196865_1197150_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP047809.1\|WP_072532959.1\|1200879_1201197_-\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|200128
NZ_CP047809.1\|WP_153156945.1\|1197151_1197514_-\|pathogenicity-island-protein	unknown	unknown	unknown
NZ_CP047809.1\|WP_001103933.1\|1200214_1200532_-\|DUF1474-family-protein	unknown	unknown	gnl\|CDD\|369323
NZ_CP047809.1\|WP_050956534.1\|1206440_1207628_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|223880
NZ_CP047809.1\|WP_000240645.1\|1203521_1205138_-\|chaperonin-GroEL	unknown	unknown	gnl\|CDD\|234573
NZ_CP047809.1\|WP_000620857.1\|1201592_1202267_+\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|379188
NZ_CP047809.1\|WP_001058487.1\|1200534_1200744_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP047809.1\|WP_001019811.1\|1196227_1196869_-\|hypothetical-protein	gnl\|CDD\|374630	pfam16560, SAPI, Putative mobile pathogenicity island. SAPI is a family of putative Gram-positive mobile pathogenicity island proteins. SAPIs are responsible for many superantigen-related diseases in humans as they carry two or more superantigens.	1.14866e-116
NZ_CP047809.1\|WP_000179346.1\|1202280_1203453_+\|site-specific-integrase	gnl\|CDD\|271189	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons. This family of tyrosine based site-specific integrases is has origins in bacterial phages and conjugate transposons. One member is the integrase from Bacillus subtilis conjugative transposon ICEBs1. ICEBs1 can be excised and transfered to various recipients in response to DNA damage or high concentrations of potential mating partners. The family belongs to the superfamily of DNA breaking-rejoining enzymes, which share the same fold in their catalytic domain and the overall reaction mechanism. The catalytic domain contains six conserved active site residues. Their overall reaction mechanism involves cleavage of a single strand of a DNA duplex by nucleophilic attack of a conserved tyrosine to give a 3' phosphotyrosyl protein-DNA adduct. In the second rejoining step, a terminal 5' hydroxyl attacks the covalent adduct to release the enzyme and generate duplex DNA.	4.55725e-47
NZ_CP047809.1\|WP_000240645.1\|1203521_1205138_-\|chaperonin-GroEL	gnl\|CDD\|234573	PRK00013, groEL, chaperonin GroEL; Reviewed.	0
NZ_CP047809.1\|WP_000867960.1\|1208811_1209597_+\|carbon-nitrogen-family-hydrolase	gnl\|CDD\|143607	cd07583, nitrilase_5, Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.	1.8432e-126
NZ_CP047809.1\|WP_094754105.1\|1197792_1199262_-\|virulence-associated-protein-E	gnl\|CDD\|283041	pfam05272, VirE, Virulence-associated protein E. This family contains several bacterial virulence-associated protein E like proteins. These proteins contain a P-loop motif.	3.46308e-77
NZ_CP047809.1\|WP_000197635.1\|1205672_1206416_+\|CPBP-family-intramembrane-metalloprotease	gnl\|CDD\|376806	pfam02517, Abi, CAAX protease self-immunity. Members of this family are probably proteases (after a isoprenyl group is attached to the Cys residue in the C-terminal CAAX motif of a protein to attach it to the membrane, the AAX tripeptide being removed by one of the CAAX prenyl proteases). The family contains the CAAX prenyl protease. The proteins contain a highly conserved Glu-Glu motif at the amino end of the alignment. The alignment also contains two histidine residues that may be involved in zinc binding. While they are involved in membrane anchoring of proteins in eukaryotes, little is known about their function in prokaryotes. In some known bacteriocin loci, Abi genes have been found downstream of bacteriocin structural genes where they are probably involved in self-immunity. Investigation of the bacteriocin-like loci in the Gram positive bacteria locus from Lactobacillus sakei 23K confirmed that the bacteriocin-like genes (sak23Kalphabeta) exhibited antimicrobial activity when expressed in a heterologous host and that the associated Abi gene (sak23Ki) conferred immunity against the cognate bacteriocin. Interestingly, the immunity genes from three similar systems conferred a high degree of cross-immunity against each other's bacteriocins, suggesting the recognition of a common receptor. Site-directed mutagenesis demonstrated that the conserved motifs constituting the putative proteolytic active site of the Abi proteins are essential for the immunity function of Sak23Ki - thus a new concept in self-immunity.	1.67124e-11
NZ_CP047809.1\|WP_000522384.1\|1207824_1208451_+\|nitroreductase-family-protein	gnl\|CDD\|226090	COG3560, FMR2, Predicted oxidoreductase related to nitroreductase [General function prediction only].	5.71771e-116
NZ_CP047809.1\|WP_161575700.1\|1199278_1200148_-\|mobile-element-associated-protein	gnl\|CDD\|214926	smart00942, PriCT_1, Primase C terminal 1 (PriCT-1). This alpha helical domain is found at the C terminal of primases.	2.1829e-15
NZ_CP047809.1\|WP_000620857.1\|1201592_1202267_+\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|379188	pfam13443, HTH_26, Cro/C1-type HTH DNA-binding domain. This is a helix-turn-helix domain that probably binds to DNA.	1.58614e-10
NZ_CP047809.1\|WP_001105707.1\|1210563_1211133_+\|accessory-gene-regulator-AgrB	gnl\|CDD\|214819	smart00793, AgrB, Accessory gene regulator B. The accessory gene regulator (agr) of Staphylococcus aureus is the central regulatory system that controls the gene expression for a large set of virulence factors. The arg locus consists of two transcripts: RNAII and RNAIII. RNAII encodes four genes (agrA, B, C, and D) whose gene products assemble a quorum sensing system. At low cell density, the agr genes are continuously expressed at basal levels. A signal molecule, autoinducing peptide (AIP), produced and secreted by the bacteria, accumulates outside of the cells. When the cell density increases and the AIP concentration reaches a threshold, it activates the agr response, i.e. activation of secreted protein gene expression and subsequent repression of cell wall-associated protein genes. AgrB and AgrD are essential for the production of the autoinducing peptide which functions as a signal for quorum sensing. AgrB is a transmembrane protein. AgrB is involved in the proteolytic processing of AgrD and may have both proteolytic enzyme activity and a transporter facilitating the export of the processed AgrD peptide.	4.40383e-47
NZ_CP047809.1\|WP_000153640.1\|1201201_1201420_-\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|197775	smart00530, HTH_XRE, Helix-turn-helix XRE-family like proteins.	9.85461e-11
NZ_CP047809.1\|WP_072532959.1\|1200879_1201197_-\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|200128	TIGR01764, Probable_excisionase, DNA binding domain, excisionase family. An excisionase, or Xis protein, is a small protein that binds and promotes excisive recombination; it is not enzymatically active. This model represents a number of putative excisionases and related proteins from temperate phage, plasmids, and transposons, as well as DNA binding domains of other proteins, such as a DNA modification methylase. This model identifies mostly small proteins and N-terminal regions of large proteins, but some proteins appear to have two copies. This domain appears similar, in both sequence and predicted secondary structure (PSIPRED) to the MerR family of transcriptional regulators (pfam00376). [Unknown function, General].	3.74021e-17
NZ_CP047809.1\|WP_001103933.1\|1200214_1200532_-\|DUF1474-family-protein	gnl\|CDD\|369323	pfam07342, DUF1474, Protein of unknown function (DUF1474). This family consists of several bacterial proteins of around 100 residues in length. Members of this family seem to be found exclusively in Staphylococcus aureus. The function of this family is unknown.	1.71792e-20
NZ_CP047809.1\|WP_050956534.1\|1206440_1207628_-\|hypothetical-protein	gnl\|CDD\|223880	COG0810, TonB, Periplasmic protein TonB, links inner and outer membranes [Cell envelope biogenesis, outer membrane].	3.53265e-07
NZ_CP047809.1\|WP_001549197.1\|1210193_1210328_-\|delta-lysin-family-phenol-soluble-modulin	gnl\|CDD\|173213	PRK14752, PRK14752, delta-lysin family phenol-soluble modulin.	8.25732e-15
NZ_CP047809.1\|WP_000917289.1\|1205213_1205498_-\|co-chaperone-GroES	gnl\|CDD\|178988	PRK00364, groES, co-chaperonin GroES; Reviewed.	5.94304e-45

>NZ_CP047809.1|WP_000153640.1|1201201_1201420_-|helix-turn-helix-transcriptional-regulator
MTILANTRKFKEAMFLKGFNLSDLSRETGVGISYLSQIINGKKIPSPKLAKKMAEVLQVEVNELFEFEVKEA
>NZ_CP047809.1|WP_072532959.1|1200879_1201197_-|helix-turn-helix-domain-containing-protein
MFNINIDEDEARELLEQAINARVDELAKEKYFMTYKELSNYLNLSKPTIEELLINNGMKYYMVGSTYRFKKSDVDAFMEQLTAHMNIQNNDFKQVNIKKLLEASQ
>NZ_CP047809.1|WP_000708434.1|1200736_1200883_-|hypothetical-protein
MKIYLTYICLVSLLTILLLAISNMYVAFSVYAWLITLGCNLTGGLENE
>NZ_CP047809.1|WP_001058487.1|1200534_1200744_-|hypothetical-protein
MNNEQKEVIEHVVYQLELSIMNNFESYEHTEYVDGIEVVSEISPEKHLELIMKWCAQELKNNFQLEKGE
>NZ_CP047809.1|WP_001103933.1|1200214_1200532_-|DUF1474-family-protein
MNWEIKDLMCDIEVIKEKINDVAIKHGWFVEDKFVKNELETKQEHINFSASYLEHRIQNEHTVELLQVYLKEFGELIQKFHEIEKASSENFGEESDDAKKLKITE
>NZ_CP047809.1|WP_161575700.1|1199278_1200148_-|mobile-element-associated-protein
MNEIKLEYDTHVSVVHYESLDSRSFKSFSKPKWSKLINKLSVPIEANYKYARGVAVYGDIKNGANDHGEIIKKHRNDVNVVYRDVIVLDYDEINDLKQLHGAISSALSNVAWFWHTSYSHRTEQARIRLYIPLNERISADDYRKYSKVLANKIGHKVDEGSYQPSRCFALPVIQKGHIFIKRVNDCPIIDVDMLEQWLKELEQSNASPNVIGYTRRDSAYWRDIAFGVSEGERNSTLASITGYLLRRYVDPNLVYGLVSAWASVCKPPINQSEVNNTFKSILKKDSKSS
>NZ_CP047809.1|WP_094754105.1|1197792_1199262_-|virulence-associated-protein-E
MENVTNDEVFEMIDSRTGVLNANDWKSQLRRSATTQALKKTTTNAEIILCNDESLKGLVQYDAFEKVTKLKRLPYWRSKGDANYYWADIDTTHVISHIDKLYNVQFSRDLIDTVIEKEAYQNRFHPIKSMIESKSWDGIKRIETLFIDYLGAEDNHYNREVTKKWMMGAVARIYQPGIKYDSMIILYGGQGVGKSTAVSKLGGHWYNQSIKTFKGDEVYKKLQGSWICEIEELSAFQKSTIEDIKGFISAIVDIYRASYGKRTERHPRQCVFVGTTNNYEFLKDQTGNRRFFPITTDKNKVTKSPFDDLTPVVVQQMFAEAKVYFDENPTDKALLLDKEASEMALKVQEAHSEKDALVGEIEEFLERPIPSDYWYRTLEEKRVSAHDVIDQDYIKLYGDGKLIELPNAKPGAYVWRDKVCSMEIWKVMMKRDDQPQQHHLRKIDKALRNTRYCGTTKRRFRFGKSIGRQYGFQIDLSSYYQDLKNETQQ
>NZ_CP047809.1|WP_153156945.1|1197151_1197514_-|pathogenicity-island-protein
MNKNQLKSEILEYIKAHAGTSFVEIEHVFEENNFDYKGDGAYTSGQHPNVVFWIGWNQEAFDVIAELKKDRRIEMDICEPIVYMVDGKGLDLPIVSSKNIKTDHWLPVTFTISKKETECV
>NZ_CP047809.1|WP_000998179.1|1196865_1197150_-|hypothetical-protein
MNDKEKIYNQLHHDAPIQIIPAPENLFVEYIEADEVWYSPVVCMALSKAHNINFYDSDDVGCIDKAATCSIKKFNPETGEFEQFSKMAQKEITQ
>NZ_CP047809.1|WP_001019811.1|1196227_1196869_-|hypothetical-protein
MNIETVVNEFETRAGTLLRYYTGLLESSRETHFAFKIYNDPFDMVYVMMKGKLYGHVYIKDCKVRQSFELASPKHTEGLIRSIEGHYVGYELHDGKQLSISDMMASHLFEDEYFMYGLQTYAESNNSDVFEYLENGFDTDTLEGIQSSNTDVIANIEMLYQIATGINEPAPELVEGLKLVTEFVQDEKATQEDYKALERKLTELKSSYYSLNK
>NZ_CP047809.1|WP_000620857.1|1201592_1202267_+|helix-turn-helix-transcriptional-regulator
MIRNRLSELLSERGLKISRVAKDVKIARSSLTSMAQNDSEMIRYDAIDKLCSYLHISPSEFFEHNPINFDFTFDEEPNYKINDVFEGFEVTANITHAFSIENFDFEILVDVELDNRQKLNFDLDVSYKETEKITNSQHRFIFTIKNEDENIGLKKYVDSLSAGLKNLLFKKINQKLSGYVSEIIVKNIDDIEELFPNKGEKSTTLHKEILQTDSRLSSDIFKEY
>NZ_CP047809.1|WP_000179346.1|1202280_1203453_+|site-specific-integrase
MASYEKRGNTWRYRISLGKDAETGKYKYISNSGFKRKSDAKHHAEMVERQLRNGDYIAPSTSTFKQVADDWISQYANEVKVSSVRAREKAINHAIERFNNKPIQTINKHEYQRFVNDISAQYSKNYVDSIIASTNMIFKYAYDMKLIRIMPSEGIKRPKKKISVEELEDTEIHKKFLEKDELFQFLEVAKNHHSPQNSFEVFCTLAYTGMRAGELLALKWSDIDFENNTINITKTYYNPNNNKKQFQILTPKTESSIGKISVDPHVIKLLKNYKVDVQDTWKNELYVDNNFVFTDVNGYPLVIKKLQLWIKAILKKTDITNKQISTHSFRHTHCALLIEAGVHIKEIQERLRHKDINTTMNIYAKITNSYKKDASQKFSKLMENVSKDLF
>NZ_CP047809.1|WP_000240645.1|1203521_1205138_-|chaperonin-GroEL
MVKQLKFSEDARQAMLRGVDQLANAVKVTIGPKGRNVVLDKEFTAPLITNDGVTIAKEIELEDPYENMGAKLVQEVANKTNEIAGDGTTTATVLAQAMIQEGLKNVTSGANPVGLRQGIDKAVKVAVEALHENSQKVENKNEIAQVGAISAADEEIGRYISEAMEKVGNDGVITIEESNGLNTELEVVEGMQFDRGYQSPYMVTDSDKMVAELERPYILVTDKKISSFQDILPLLEQVVQSNRPILIVADEVEGDALTNIVLNRMRGTFTAVAVKAPGFGDRRKAMLEDLAILTGAQVITDDLGLDLKDASIDMLGTASKVEVTKDNTTVVDGDGDENSIDARVSQLKSQIEETESDFDREKLQERLAKLAGGVAVIKVGAASETELKERKLRIEDALNSTRAAVEEGIVAGGGTALVNVYQKVSEIEAEGDIETGVNIVLKALTAPVRQIAENAGLEGSVIVERLKNAEPGVGFNAATNEWVNMLEEGIVDPTKVTRSALQHAASVAAMFLTTEAVVASIPEKNNDQPNMGGMPGMM
>NZ_CP047809.1|WP_000917289.1|1205213_1205498_-|co-chaperone-GroES
MLKPIGNRVIIEKKEQEQTTKSGIVLTDSAKEKSNEGVIVAVGTGRLLNDGTRVTPEVKEGDRVVFQQYAGTEVKRDNETYLVLNEEDILAVIE
>NZ_CP047809.1|WP_000197635.1|1205672_1206416_+|CPBP-family-intramembrane-metalloprotease
MTRLWASLLTVIIYILSQFLPLLIVKKLPFVQYSGIELTKAVIYIQLVLFLIAATTIILINLKIKNPTKLELEVKEPKKYIIPWALLGFALVMIYQMVVSIVLTQIYGGQQVSPNTEKLIIIARKIPIFIFFVSIIGPLLEEYVFRKVIFGELFNAIKGNRIVAFIIATTVSSLIFALAHNDFKFIPVYFGMGVIFSLAYVWTKRLAVPIIIHMLQNGFVVIFQLLNPEALKKATEQANFIYHIFIP
>NZ_CP047809.1|WP_050956534.1|1206440_1207628_-|hypothetical-protein
MSYHWFKKMLLSTSILILSSSSLGLATHTVEAKDNLNGEKPTTNLNHNITSPSVNSEMNNNETGTPHESNQTGNEGTGSNSRDANPDSNNVKPDSNNQNPSTDSKPDPNNQNSSPNPKPDPDNPKPKPDPKPDPDKPKPNPDPKPDPDNPKPNPDPKPDPDKPKPNPNPSPDPDQPGDSNHSGGSKNGGTWNPNASDGSNQGQWQPNGNQGNSQNPTGNDFVSQRFLALANGAYKYNPYILNQINKLGKDYGEVTDEDIYNIIRKQNFSGNAYLNGLQQQSNYFRFQYFNPLKSERYYRNLDEQVLALITGEIGSMPDLKKPEDKPDSKQRSFEPHEKDDFTVVKKQEDNKKSASTAYSKSWLAIVCSMMVVFSIMLFLFVKRNKKKNKNESQRR
>NZ_CP047809.1|WP_000522384.1|1207824_1208451_+|nitroreductase-family-protein
MGLFKKDKKAMTFDNAMEERRSIYNLKDSISISDDELESMIAHAVKHVPSSFNSQSTRIVLLLNDNNNKFWDNTKAILKEVMGENRDFEPTEQKIDNFKHSYGTILFYEDQDVVSGLQEQMPNYYDNFAIWSTQTNAMHQFAIWTALATKGIGASLQHYNPLVDEMTSNEFNIPKSWKLIAQMPFGDIREAAGEKTFNPVEDRFVIKK
>NZ_CP047809.1|WP_000867960.1|1208811_1209597_+|carbon-nitrogen-family-hydrolase
MKVQIYQLPIVFGDSSKNETQITQWFEKNMNAEVDVVVLPEMWNNGYDLEHLNEKADNNLGQSFSFIKHLAEKYKVDIVAGSVSNIRNNQIFNTAFSVNKSGQLINEYDKVHLVPMLREHEFLTAGEYVAEPFQLSDGTYVTQLICYDLRFPELLRYPARSGAKIAFYVAQWPMSRLQHWHSLLKARAIENNMFVIGTNSTGFDGNTEYAGHSIVINPNGDLVGELNESADILTVDLNLNEVEQQRENIPVFKSIKLDLYK
>NZ_CP047809.1|WP_001549197.1|1210193_1210328_-|delta-lysin-family-phenol-soluble-modulin
MSCLILRIFILIKEGVISMAQDIISTIGDLVKWIIDTVNKFTKK
>NZ_CP047809.1|WP_001105707.1|1210563_1211133_+|accessory-gene-regulator-AgrB
MNYFDNKIDQFATYLQKRNNLDHIQFLQVRLGMQVLAKNIGKLIVMYTIAYILNIFLFTLITNLTFYLIRRHAHGAHAPSSFWCYVESIILFILLPLVIVNFHINFLIMIILTVISLGVISVYAPAATKKKPIPVRLIKRKKYYAIIVSLTLFIITLIIKEPFAQFIQLGIIIEAITLLPIFFIKEDLK

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Click the colored protein region to show detailed information

Crispr_ID: NZ_CP047809_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP047809_5

1328382-1328532

Orphan

Consensus_repeat	Method
AACTTTAGTTGTTAGGGGCTCTTATGCA	CRISPRCasFinder

2 spacers

csa3

The CRISPR arrays of NZ_CP047809_5

>merge|NZ_CP047809|5|1328382-1328532|CRISPRCasFinder
AACTTTAGTTGTTAGGGGCTCTTATGCATGCGCTTAGCGCAGGCGCTCCTACTTTTAAACTTTAGTTGTTAGGGGCTCTTATGCAGTTGATGCGTAGCATCCAACTGTGTTCCTCTATTTTTCAACTTTAGTTGTTAGGGGCTTCTTTCTA

>NZ_CP047809|5|3|1328382-1328532|CRISPRCasFinder
AACTTTAGTTGTTAGGGGCTCTTATGCA	TGCGCTTAGCGCAGGCGCTCCTACTTTTA
AACTTTAGTTGTTAGGGGCTCTTATGCA	GTTGATGCGTAGCATCCAACTGTGTTCCTCTATTTTTC
AACTTTAGTTGTTAGGGGCTTCTTTCTA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP047809.1\|WP_001127960.1\|1323514_1324453_-\|class-I-mannose-6-phosphate-isomerase	unknown	unknown	gnl\|CDD\|224399
NZ_CP047809.1\|WP_001790138.1\|1331079_1331172_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP047809.1\|WP_000083807.1\|1336301_1337840_+\|PTS-mannitol-transporter-subunit-IICB	unknown	unknown	gnl\|CDD\|225123
NZ_CP047809.1\|WP_000115562.1\|1329654_1330791_-\|SAP-domain-containing-protein	unknown	unknown	gnl\|CDD\|366887
NZ_CP047809.1\|WP_000019744.1\|1326026_1327007_+\|CDF-family-zinc-efflux-transporter-CzrB	unknown	unknown	gnl\|CDD\|224151
NZ_CP047809.1\|WP_000160304.1\|1318863_1319574_+\|purine-nucleoside-phosphorylase	unknown	unknown	gnl\|CDD\|180275
NZ_CP047809.1\|WP_000927363.1\|1337874_1340007_+\|BglG-family-transcription-antiterminator	unknown	unknown	gnl\|CDD\|226234
NZ_CP047809.1\|WP_000334465.1\|1333815_1335621_-\|glutamine--fructose-6-phosphate-transaminase-(isomerizing)	unknown	unknown	gnl\|CDD\|234729
NZ_CP047809.1\|WP_000648719.1\|1340452_1341559_+\|mannitol-1-phosphate-5-dehydrogenase	unknown	unknown	gnl\|CDD\|235031
NZ_CP047809.1\|WP_001024094.1\|1324887_1325553_-\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|187554
NZ_CP047809.1\|WP_001123303.1\|1320337_1320751_-\|thiol-disulfide-oxidoreductase-DCC-family-protein	unknown	unknown	gnl\|CDD\|225556
NZ_CP047809.1\|WP_001292149.1\|1340018_1340453_+\|PTS-sugar-transporter-subunit-IIA	unknown	unknown	gnl\|CDD\|227014
NZ_CP047809.1\|WP_000495671.1\|1327272_1328364_+\|lytic-regulatory-protein	unknown	unknown	unknown
NZ_CP047809.1\|WP_001802298.1\|1328863_1328968_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP047809.1\|WP_000808817.1\|1323253_1323484_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP047809.1\|WP_000003759.1\|1325704_1326025_+\|Zn(II)-responsive-metalloregulatory-transcriptional-repressor-CzrA	csa3	COG0640_csa3_CAS-I-A	gnl\|CDD\|238042
NZ_CP047809.1\|WP_000123393.1\|1321208_1322582_-\|EVE-domain-containing-protein	unknown	unknown	gnl\|CDD\|376640
NZ_CP047809.1\|WP_000370924.1\|1331876_1332734_-\|Cof-type-HAD-IIB-family-hydrolase	unknown	unknown	gnl\|CDD\|223635
NZ_CP047809.1\|WP_000070866.1\|1319694_1320138_-\|DNA-starvation/stationary-phase-protection-protein	unknown	unknown	gnl\|CDD\|223854
NZ_CP047809.1\|WP_000908177.1\|1332801_1333584_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224044

Protein	Function_ID	Function_description	E-value
NZ_CP047809.1\|WP_001127960.1\|1323514_1324453_-\|class-I-mannose-6-phosphate-isomerase	gnl\|CDD\|224399	COG1482, ManA, Phosphomannose isomerase [Carbohydrate transport and metabolism].	7.24075e-129
NZ_CP047809.1\|WP_001292149.1\|1340018_1340453_+\|PTS-sugar-transporter-subunit-IIA	gnl\|CDD\|227014	COG4668, MtlA, Mannitol/fructose-specific phosphotransferase system, IIA domain [Carbohydrate transport and metabolism].	2.08822e-62
NZ_CP047809.1\|WP_000115562.1\|1329654_1330791_-\|SAP-domain-containing-protein	gnl\|CDD\|366887	pfam02037, SAP, SAP domain. The SAP (after SAF-A/B, Acinus and PIAS) motif is a putative DNA/RNA binding domain found in diverse nuclear and cytoplasmic proteins.	3.8303e-06
NZ_CP047809.1\|WP_000019744.1\|1326026_1327007_+\|CDF-family-zinc-efflux-transporter-CzrB	gnl\|CDD\|224151	COG1230, CzcD, Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism].	1.049e-108
NZ_CP047809.1\|WP_000160304.1\|1318863_1319574_+\|purine-nucleoside-phosphorylase	gnl\|CDD\|180275	PRK05819, deoD, DeoD-type purine-nucleoside phosphorylase.	2.10672e-157
NZ_CP047809.1\|WP_000927363.1\|1337874_1340007_+\|BglG-family-transcription-antiterminator	gnl\|CDD\|226234	COG3711, BglG, Transcriptional antiterminator [Transcription].	4.09729e-67
NZ_CP047809.1\|WP_000083807.1\|1336301_1337840_+\|PTS-mannitol-transporter-subunit-IICB	gnl\|CDD\|225123	COG2213, MtlA, Phosphotransferase system, mannitol-specific IIBC component [Carbohydrate transport and metabolism].	0
NZ_CP047809.1\|WP_000648719.1\|1340452_1341559_+\|mannitol-1-phosphate-5-dehydrogenase	gnl\|CDD\|235031	PRK02318, PRK02318, mannitol-1-phosphate 5-dehydrogenase; Provisional.	0
NZ_CP047809.1\|WP_001024094.1\|1324887_1325553_-\|SDR-family-oxidoreductase	gnl\|CDD\|187554	cd05243, SDR_a5, atypical (a) SDRs, subgroup 5. This subgroup contains atypical SDRs, some of which are identified as putative NAD(P)-dependent epimerases, one as a putative NAD-dependent epimerase/dehydratase. Atypical SDRs are distinct from classical SDRs. Members of this subgroup have a glycine-rich NAD(P)-binding motif that is very similar to the extended SDRs, GXXGXXG, and binds NADP. Generally, this subgroup has poor conservation of the active site tetrad; however, individual sequences do contain matches to the YXXXK active site motif, the upstream Ser, and there is a highly conserved Asp in place of the usual active site Asn throughout the subgroup. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif.	5.74381e-48
NZ_CP047809.1\|WP_000908177.1\|1332801_1333584_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224044	COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism].	9.86955e-104
NZ_CP047809.1\|WP_000334465.1\|1333815_1335621_-\|glutamine--fructose-6-phosphate-transaminase-(isomerizing)	gnl\|CDD\|234729	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase.	0
NZ_CP047809.1\|WP_000070866.1\|1319694_1320138_-\|DNA-starvation/stationary-phase-protection-protein	gnl\|CDD\|223854	COG0783, Dps, DNA-binding ferritin-like protein (oxidative damage protectant) [Inorganic ion transport and metabolism].	1.22744e-67
NZ_CP047809.1\|WP_000003759.1\|1325704_1326025_+\|Zn(II)-responsive-metalloregulatory-transcriptional-repressor-CzrA	gnl\|CDD\|238042	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors. ARSR subfamily of helix-turn-helix bacterial transcription regulatory proteins (winged helix topology). Includes several proteins that appear to dissociate from DNA in the presence of metal ions.	1.8473e-17
NZ_CP047809.1\|WP_000123393.1\|1321208_1322582_-\|EVE-domain-containing-protein	gnl\|CDD\|376640	pfam01878, EVE, EVE domain. This domain was formerly known as DUF55. Crystal structures have shown that this domain is part of the PUA superfamily. This domain has been named EVE and is thought to be RNA-binding.	3.86989e-06
NZ_CP047809.1\|WP_000370924.1\|1331876_1332734_-\|Cof-type-HAD-IIB-family-hydrolase	gnl\|CDD\|223635	COG0561, Cof, Predicted hydrolases of the HAD superfamily [General function prediction only].	5.39747e-59
NZ_CP047809.1\|WP_001123303.1\|1320337_1320751_-\|thiol-disulfide-oxidoreductase-DCC-family-protein	gnl\|CDD\|225556	COG3011, COG3011, Predicted thiol-disulfide oxidoreductase [General function prediction only].	3.14887e-46

>NZ_CP047809.1|WP_000495671.1|1327272_1328364_+|lytic-regulatory-protein
MFTYFKSAFKNAKPQLLITLIYALIAFAVIAVVYLLANFQLAKYAQTIAIYSQFGQKPPVDAYLKVIAVLLIAAVVSLFVLVQIFIGITNVMKRAMSHEKVKFTDLFIAFKKGNYLKSVLIGLVSIAMIIVLSLLTSLLYKLFSPVSEMIMNSVQSSYADSTHLIGIAITTQSIIIIVVLLIKAIITWLLLIPIFNFMTSFVESTNDKVKTHLANGFKAMKNGQKTFFKFFIGILLLNLIIILFKTPVGYLISFNTQSLSQSVAENIIRVYTVMTIILFVVIHAIILMGIVQYYLKRGQKITKDKVKTADKNKKVVTEPKNTKVENDKVTTSVETKTEKAQDSLNDNTTKTMTSDKPEDNQPK
>NZ_CP047809.1|WP_000019744.1|1326026_1327007_+|CDF-family-zinc-efflux-transporter-CzrB
MSHSHHHHDHMHSHVTTNNKKVLFISFLIIGLYMFIEIIGGLLANSLALLSDGIHMFSDTFSLGVALVAFIYAEKNATTTKTFGYKRFEVLAALFNGVTLFVISILIVFEAIKRFFVPSEVQSKEMLIISIIGLIVNIVVAFFMFKGGDTSHNLNMRGAFLHVIGDLLGSVGAITAAILIWAFGWTIADPIASILVSVIILKSAWGITKSSINILMEGTPSDVDIDEVITTIKKDSRIQSVHDCHVWTISNDMNALSCHVVVDHTLTMKECELLLENIEHDLLHLNIHHMTIQLETPNHKHDESIICSGTHSHSHNHHAHHHAHVH
>NZ_CP047809.1|WP_000003759.1|1325704_1326025_+|Zn(II)-responsive-metalloregulatory-transcriptional-repressor-CzrA
MSEQYSEINTDTLERVTEIFKALGDYNRIRIMELLSVSEASVGHISHQLNLSQSNVSHQLKLLKSVHLVKAKRQGQSMIYSLDDIHVATMLKQAIHHANHPKESGL
>NZ_CP047809.1|WP_001024094.1|1324887_1325553_-|SDR-family-oxidoreductase
MNILVIGANGGVGSLLVQQLAKENVPFTAGVRQSDQLNALKSQGMKAILVDVENDSIETLTETFKPFDKVIFSVGSGGNTGADKTIIVDLDGAVKSMIASKEANIKHYVMVSTYDSRRQAFDDSGDLKPYTIAKHYADDYLRRSGLNYTILHPGALTNAAGSGKIEAAQYFDGKGEIPREDVATVLKEIVTSNHFNHQEFQIISGDQDIKDALTQFENETD
>NZ_CP047809.1|WP_001127960.1|1323514_1324453_-|class-I-mannose-6-phosphate-isomerase
MPLFLQPILKTKLWGGQRLSEFGYQLDNDTTGECWCVSAHPNGTSEIINGPYQGQTLDRIWSEHRELFGDFPSKDFPLLTKIVDARESLSIHVHPDNSYAYEHENGQYGKSECWYIIDAEEDAEIVIGTLAESREEVANHVQHGTIESILRYIKVKPGEFYFIPAGTVHTISSGILAYETMQSSDITYRLYDFNRQDNQYNDRPLNIEKALDVIQYNAPLPNILPESEIIENHKCTHIVSNDFFTLVKWEISGTLNYMKPREFCLVTVLEGEGQMIVDGEIFKLTTGTNFILTSEDLDSVFEGDFTLMISYV
>NZ_CP047809.1|WP_000808817.1|1323253_1323484_-|hypothetical-protein
MKQFLYIALVCGVIAGLGAFLHIPQYPSMTIPRIVAILGIISAMLTFKDKQISASLKFSALLINVLPLCGTFVASN
>NZ_CP047809.1|WP_000123393.1|1321208_1322582_-|EVE-domain-containing-protein
MTAETNYFWLNCGYNRWNHNEPLVGQTALFESGAHFNPSQGFRAFKKAKVGDQVIFYQVQTDTGLLGCGEIISVETGAQNKIRVQFRFNEQLKPLTADYLKRSEALEFRISNMKETLFNQITAEEFDLISGLGKGEIKIPRYFFLAETEEFEPGNQYTIYTHTYNGIKRNGYHFYTQLEEGDNIIFYNRTKNQSVVGIGEVSKHIHEKPPIPGRTNSTVIEVSYEKDITPITLSTLNKHPKLKNLYFLQENAKQAIASMSQAQYDAIIEMSDNNGLKSPFEMVQKPDMLESEKEEALKPFILLVVDRKEEGLKAANDLLQKANANPVITTGHPDFSEDMLYGKYLPNETGALYYREGFITQLMPKKDKSYLVIDNFNRIDTDIFQTYINVLEGYEVTLPRYNKDGNMIKWSRQKDSFYYFNPNWHIVGITYDSLEEIKEKYSEQFLKYTRIVKVKHD
>NZ_CP047809.1|WP_001123303.1|1320337_1320751_-|thiol-disulfide-oxidoreductase-DCC-family-protein
MPIVYYDGNCIYCYNYVIWLIQHDLPRNYQFATLKGEVGQQFFKQHPEAANKNSVILQKGDRIYFESQAIIKLITALPNRTKLLGVGLWLVPKPVRNFGYRMFANNRNRMWKTTWHQPNDYEKSFFLDDNAKVKLTD
>NZ_CP047809.1|WP_000070866.1|1319694_1320138_-|DNA-starvation/stationary-phase-protection-protein
MSNQQDVVKELNQQVANWTVAYTKLHNFHWYVKGPNFFSLHVKFEELYNEASQYVDELAERILAVGGNPVGTLTECLEQSIVKEAAKGYSAEQMVEELSQDFTNISKQLENAIEIAGNAGDDVSEDMFIGMQTSVDKHNWMFKSYLS
>NZ_CP047809.1|WP_000160304.1|1318863_1319574_+|purine-nucleoside-phosphorylase
MTKGTPHIQPNGVKIAKTVLMPGDPLRAKYIADNFLENVEQFNDVRNMFGYTGTYKGKEVSVMGSGMGIPSIGIYSYELYNFFDVDTIIRIGSCGALQENVNLYDVIIAQAASTNSNYVDQYNIPGHFAPIADFELVTKAKNVADQIGATTHVGNVLSSDTFYNADPTFNDAWKKMGILGIEMESAGLYLNAIHAGKKALGIFTVSDHILRDEATTPEERQNSFTQMMEIALEIAE
>NZ_CP047809.1|WP_001802298.1|1328863_1328968_-|hypothetical-protein
MLLLERTSMSDFEMLMVVLTIIGLVLISTQDHKK
>NZ_CP047809.1|WP_000115562.1|1329654_1330791_-|SAP-domain-containing-protein
MSVNARDLLVLHTNVNRLVGEEIFANKCLANNDVQIMNSIKKLIEAELLTTTNDFEVSIYKKTRPELQSILKSFGIKTTGNKPDLIKRIDDNFHIINNLDLPYVYIPIKKGEEILKKTEYLTSFIQSYGEISLERAYYLVENYIDENCDDKVAEIYKFEFQRKYDNGEFDFNHGYNFELNMLIDHYKRDVKDYDNARKYSNIYLYFGLRDFLKKLMSNYSYYDSKGNIDLNEIQNDLNRFINSSASGMYERLIYNENLSNNIMFELFKKDTQDYSDLEEQLIEKFINYVVSNVKKESRSNTLIELSKILENGYTIDKEEFKKEDDYLSKYIFTDIDYLKKLESKINVAIDIRSGEIHLVLDDDSLDILIQNQKYGNEF
>NZ_CP047809.1|WP_001790138.1|1331079_1331172_+|hypothetical-protein
MFIFKTTSKSHFHNNVKSLECIKIPINKNR
>NZ_CP047809.1|WP_000370924.1|1331876_1332734_-|Cof-type-HAD-IIB-family-hydrolase
MDNVKAIFLDMDGTILHENNQASTYTKDVINQLREKGYKVFLATGRSHSEIHQLVPQDFAVNGIISSNGTIGEVDGEIIFKHGLSLAQVQQITNLAKRQQIYYEVFPFEGNRVSLKEDETWMRDMIRSQDPINGVSHSEWSSRQDALAGKIDWVTKFPEGEYSKIYLFSSNLEKITAFRDELKQNHVQLQISVSNSSRFNAETMAYQTDKGTGIKEMIAHFGIHQEETLVIGDSDNDRAMFEFGHYTVAMKNARPEIQALTSDVTAYTNEEDGAAKYLAEHFLAE
>NZ_CP047809.1|WP_000908177.1|1332801_1333584_-|ABC-transporter-ATP-binding-protein
MLIQLDQIGRMKQGKTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKMPGKVGYSAETVRQHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMSAKAQQYIGYLSTGEKQRVMIARALMGQPQVLILDEPAAGLDFIARESLLSILDSLSDSYPTLAMIYVTHFIEEITANFSKILLLKDGQSIQQGAVEDILTSENMSRFFQKNVAVQRWNNRFSMAMLE
>NZ_CP047809.1|WP_000334465.1|1333815_1335621_-|glutamine--fructose-6-phosphate-transaminase-(isomerizing)
MCGIVGYIGYDNAKELLLKGLEKLEYRGYDSAGIAVVNDDNTTVFKEKGRIAELRKVADSSDFDGPVGIGHTRWATHGVPNHENSHPHQSSNGRFTLVHNGVIENYEELKGEYLQGVSFISETDTEVIVQLVEYFSNQGLSTEEAFTKVVSLLHGSYALGLLDAEDKDTIYVAKNKSPLLLGVGEGFNVIASDALAMLQVTSEYKEIHDHEIVIVKKDEVIIKDADGNVVERDSYIAEIDASDAEKGVYAHYMLKEIHEQPAVMRRIIQEYQDAEGNLKIDQDIINDVKEADRIYVIAAGTSYHAGLVGKEFLEKWAGVPTEVHVASEFVYNMPLLSEKPLFVYISQSGETADSRAVLVETNKLGHKSLTITNVAGSTLSREADHTLLLHAGPEIAVASTKAYTAQIAVLSILSQIVAKEHGREADIDLLRELAKVTTAIEAIVDDAPIMEQIATDFLETTRNAFFIGRTIDYNVSLEGALKLKEISYIQAEGFAGGELKHGTIALIEEGTPVVGLATQEKVNLSIRGNVKEVVARGAHPCIISMEGLEKEGDTYVIPHVHELLTPLVSVVALQLISYYAALHRDLDVDKPRNLAKSVTVE
>NZ_CP047809.1|WP_000083807.1|1336301_1337840_+|PTS-mannitol-transporter-subunit-IICB
MSQTEEKKGIGRRVQAFGSFLSSMIMPNIGAFIAWGFIAAIFIDNGWLPNKDLATLAGPMITYLIPLLIAFSGGRLIYDLRGGIIAATATMGVIVALPDTPMLLGAMIMGPLVGWLMKKTDQLIQPRTPQGFEMLFNNFSAGILGFIMTIAGFKILAPLMKFIMHILSVAVEALVHAHLLPLVSILVEPAKIVFLNNAINHGVFTPLGADQAAKAGQSILYTIESNPGPGLGILLAYMIFGKGTAKATSYGAGIIHFLGGIHEIYFPYVLMRPLLFIAVILGGMTGVATYQATGFGFKSPASPGSFIVYCLNAPRGEFLHMLLGVFLAALVSFVVAALIMKFTREPKQDLEAATAQMENTKGKKSSVASKLVSSDKNVNTEENASGNVSETSSSDDDPEALLDNYNTEDVDAHNYNNINHVIFACDAGMGSSAMGASMLRNKFKKAGINDITVTNTAINQLPKDAQLVITQKKLTDRAIKQTPNAIHISVDNFLNSPRYEELLNNLKKDDQA
>NZ_CP047809.1|WP_000927363.1|1337874_1340007_+|BglG-family-transcription-antiterminator
MLLSTREKEMIALLIKYHGQYITIHDIAQQLAVSSRTIHRELKGVEAYLTSFSLTLERANKKGLRIAGTDSDLNDLKQSIAQHQTIDLSVEEQKVIIIYALIQAKEPVKQYSLAQEIGVSVQTLAKMLDDLELDLNKYQLSLSRKRGEGIYLVGTESKKREFLSQLMVNNLNSTSVYSVIENHFVFHSLNQIHKDFVDLERIFNVERLLMDYLSALPYQLTESSYLTLTVHIVLSISRIKNGEYVALNDDIYDSVQNTFEHKVASELADKLGQIYDVTFNQAEIAFITIHLRGAKRKNLNDTSLNNRCEENKIKAFVNKVEMISGMTFADLDTLVDGLTLHLNPAINRLQANIETYNPLTDMIKFKYPRLFENVRLALNDCWPDLIFPESEIAFIVLHFGGSIKNQGNRFLNILVVCSSGMGTSRLLSTRLEQVFSEIERITQASVSDLKSLDLSQYDGIISTVNLDIDSPYLTVNPLLPDSDISYVAQFLNTKSTFQETHDKSSNMIDKDDVHVETKDVDGNTSFENEQTSYLTSVFEKHLSDEKSEQLLHHMRSGLTLLDSVKIVSTEVKQWQTYIADYLYQCDVINDPTSFAELLEQRLIDNPGWILSPYPVAIPHLRDNMIKHPMILITVLEEPLTLPSIQNDNQTIKYMISMFISDNDFMASLVSDLSEFLSLKLESIDTFMENPQELETLLRNKFLERIKKQFI
>NZ_CP047809.1|WP_001292149.1|1340018_1340453_+|PTS-sugar-transporter-subunit-IIA
MSELFSNDNIFLNVNVNSQNEAIEKAGKALVDSGAVTDAYIQAMKDREQVVSTFMGNGLAIPHGTDEAKTNVIHSGLTLLQIPEGVDWDGEVVKVVVGIAGKDGEHLDLLSKIAITFSEEENVDRIVQAKSAEEIKQVFEEADA
>NZ_CP047809.1|WP_000648719.1|1340452_1341559_+|mannitol-1-phosphate-5-dehydrogenase
MKAVHFGAGNIGRGFIGYILADNNVKVTFADVNEEIINALAHDHQYDVILADESKTTTRVNNVDAINSMQPSEALKQAILEADIITTAVGVNILPIIAKSFAPFLKEKTNHVNIVACENAIMATDTLKKAVLDITGPLGNNIHFANSAVDRIVPLQKNENILDVMVEPFYEWVVEKDAWYGPELNHIKYVDDLTPYIERKLLTVNTGHAYLAYAGKFAGKATVLDAVEDSSIEAGLRRVLAETSQYITNEFDFTEAEQAGYVEKIIDRFNNSYLSDEVTRVGRGTLRKIGPKDRIIKPLTYLYNKDLERTGLLNTAALLLKYDDTADQETVEKNNYIKEHGLKAFLSEYAKVDDGLADEIIEAYNSLS

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Crispr_ID: NZ_CP047809_6

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP047809_6

2373307-2373407

Orphan

Consensus_repeat	Method
TTATGAATTGAGTATTAAATTTG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP047809_6

>merge|NZ_CP047809|6|2373307-2373407|CRISPRCasFinder
TTATGAATTGAGTATTAAATTTGAAAGTAAATTACAGTTCTATAGGTTTATAAAAATCAGTTTTTAAATCAAAGCTATATATGAATTGAGTATTAAATTTG

>NZ_CP047809|6|4|2373307-2373407|CRISPRCasFinder
TTATGAATTGAGTATTAAATTTG	AAAGTAAATTACAGTTCTATAGGTTTATAAAAATCAGTTTTTAAATCAAAGCTAT
ATATGAATTGAGTATTAAATTTG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP047809.1\|WP_000421410.1\|2376222_2376801_+\|xanthine-phosphoribosyltransferase	unknown	unknown	gnl\|CDD\|181705
NZ_CP047809.1\|WP_000793009.1\|2376800_2378069_+\|purine-permease	unknown	unknown	gnl\|CDD\|274468
NZ_CP047809.1\|WP_000551776.1\|2381251_2381788_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP047809.1\|WP_000264071.1\|2378106_2379573_+\|IMP-dehydrogenase	unknown	unknown	gnl\|CDD\|235507
NZ_CP047809.1\|WP_001289311.1\|2370222_2370978_+\|NADPH-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|380322
NZ_CP047809.1\|WP_000052781.1\|2369161_2369731_-\|peroxiredoxin	unknown	unknown	gnl\|CDD\|211789
NZ_CP047809.1\|WP_000394698.1\|2374497_2375160_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP047809.1\|WP_000763768.1\|2375302_2375710_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|378584
NZ_CP047809.1\|WP_000159787.1\|2383283_2383556_-\|transposase	unknown	unknown	gnl\|CDD\|225511
NZ_CP047809.1\|WP_001789518.1\|2372531_2372633_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP047809.1\|WP_000211676.1\|2364879_2365089_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP047809.1\|WP_000158374.1\|2365266_2365848_+\|histidine-phosphatase-family-protein	unknown	unknown	gnl\|CDD\|223483
NZ_CP047809.1\|WP_000041883.1\|2382180_2382885_-\|type-II-toxin-antitoxin-system-PemK/MazF-family-toxin	unknown	unknown	gnl\|CDD\|367091
NZ_CP047809.1\|WP_000956132.1\|2373423_2374380_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|235334
NZ_CP047809.1\|WP_001795623.1\|2367250_2367544_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP047809.1\|WP_000991007.1\|2371058_2372447_-\|L-cystine-transporter	unknown	unknown	gnl\|CDD\|224736
NZ_CP047809.1\|WP_000868248.1\|2365913_2366297_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP047809.1\|WP_000424966.1\|2379597_2381139_+\|glutamine-hydrolyzing-GMP-synthase	unknown	unknown	gnl\|CDD\|234614
NZ_CP047809.1\|WP_000746687.1\|2366551_2367178_-\|NDxxF-motif-lipoprotein	unknown	unknown	gnl\|CDD\|380196
NZ_CP047809.1\|WP_000930486.1\|2367622_2369146_-\|alkyl-hydroperoxide-reductase-subunit-F	unknown	unknown	gnl\|CDD\|237942

Protein	Function_ID	Function_description	E-value
NZ_CP047809.1\|WP_000421410.1\|2376222_2376801_+\|xanthine-phosphoribosyltransferase	gnl\|CDD\|181705	PRK09219, PRK09219, xanthine phosphoribosyltransferase; Validated.	9.01486e-119
NZ_CP047809.1\|WP_000793009.1\|2376800_2378069_+\|purine-permease	gnl\|CDD\|274468	TIGR03173, pbuX, xanthine permease. All the seed members of this model are observed adjacent to genes for either xanthine phosphoribosyltransferase (for the conversion of xanthine to guanine, GenProp0696) or genes for the conversion of xanthine to urate and its concomitant catabolism (GenProp0640, GenProp0688, GenProp0686 and GenProp0687). A number of sequences scoring higher than trusted to this model are found in different genomic contexts, and the possibility exist that these transport related compounds in addition to or instead of xanthine itself. The outgroup to this family are sequences which are characterized as uracil permeases or are adjacent to established uracil phosphoribosyltransferases.	2.75897e-170
NZ_CP047809.1\|WP_000763768.1\|2375302_2375710_-\|hypothetical-protein	gnl\|CDD\|378584	pfam11181, YflT, Heat induced stress protein YflT. YflT is a heat induced protein.	2.0219e-12
NZ_CP047809.1\|WP_001289311.1\|2370222_2370978_+\|NADPH-dependent-oxidoreductase	gnl\|CDD\|380322	cd02146, NfsA-like, nitroreductase similar to Escherichia coli NfsA. This family contains NADPH-dependent flavin reductase and oxygen-insensitive nitroreductase. These enzymes are homodimeric flavoproteins that contain one FMN per monomer as a cofactor. Flavin reductase catalyzes the reduction of flavin by using NADPH as an electron donor. Oxygen-insensitive nitroreductase, such as NfsA protein in Escherichia coli, catalyzes reduction of nitrocompounds using NADPH as electron donor.	5.03864e-88
NZ_CP047809.1\|WP_000052781.1\|2369161_2369731_-\|peroxiredoxin	gnl\|CDD\|211789	TIGR03137, AhpC, peroxiredoxin. This peroxiredoxin (AhpC, alkylhydroperoxide reductase subunit C) is one subunit of a two-subunit complex with subunit F(TIGR03140). Usually these are found as an apparent operon. The gene has been characterized in Bacteroides fragilis, where it is important in oxidative stress defense. This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue. [Cellular processes, Detoxification, Cellular processes, Adaptations to atypical conditions].	1.50623e-124
NZ_CP047809.1\|WP_000264071.1\|2378106_2379573_+\|IMP-dehydrogenase	gnl\|CDD\|235507	PRK05567, PRK05567, inosine 5'-monophosphate dehydrogenase; Reviewed.	0
NZ_CP047809.1\|WP_000158374.1\|2365266_2365848_+\|histidine-phosphatase-family-protein	gnl\|CDD\|223483	COG0406, phoE, Broad specificity phosphatase PhoE and related phosphatases [General function prediction only].	2.78414e-49
NZ_CP047809.1\|WP_000041883.1\|2382180_2382885_-\|type-II-toxin-antitoxin-system-PemK/MazF-family-toxin	gnl\|CDD\|367091	pfam02452, PemK_toxin, PemK-like, MazF-like toxin of type II toxin-antitoxin system. PemK is a growth inhibitor in E. coli known to bind to the promoter region of the Pem operon, auto-regulating synthesis. This family represents the toxin molecule of a typical bacterial toxin-antitoxin system pairing. The family includes a number of different toxins, such as MazF, Kid, PemK, ChpA, ChpB and ChpAK.	9.65175e-08
NZ_CP047809.1\|WP_000746687.1\|2366551_2367178_-\|NDxxF-motif-lipoprotein	gnl\|CDD\|380196	NF033193, lipo_NDxxF, NDxxF motif lipoprotein. Members of this family are lipoproteins, about 200 amino acids long in precursor form, found in Staphylococcus aureus, Bacillus cereus, and various other Firmicutes. The protein family is named for one of its several highly conserved motifs.	1.67126e-71
NZ_CP047809.1\|WP_000159787.1\|2383283_2383556_-\|transposase	gnl\|CDD\|225511	COG2963, COG2963, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	9.23077e-11
NZ_CP047809.1\|WP_000991007.1\|2371058_2372447_-\|L-cystine-transporter	gnl\|CDD\|224736	COG1823, COG1823, Predicted Na+/dicarboxylate symporter [General function prediction only].	0
NZ_CP047809.1\|WP_000424966.1\|2379597_2381139_+\|glutamine-hydrolyzing-GMP-synthase	gnl\|CDD\|234614	PRK00074, guaA, GMP synthase; Reviewed.	0
NZ_CP047809.1\|WP_000956132.1\|2373423_2374380_-\|hypothetical-protein	gnl\|CDD\|235334	PRK05035, PRK05035, electron transport complex protein RnfC; Provisional.	0.000748442
NZ_CP047809.1\|WP_000930486.1\|2367622_2369146_-\|alkyl-hydroperoxide-reductase-subunit-F	gnl\|CDD\|237942	PRK15317, PRK15317, alkyl hydroperoxide reductase subunit F; Provisional.	0

>NZ_CP047809.1|WP_001789518.1|2372531_2372633_+|hypothetical-protein
MQLNVNMMKFDRWHKGICKQIVLNSVVIGGKGK
>NZ_CP047809.1|WP_000991007.1|2371058_2372447_-|L-cystine-transporter
MNAFLTLINIIVLVIFIVILHMMARKHISFAKRVFTALGIGIVFGVLLHLIYGTHSNVITSTSDWFNIVGQGYVALLQMIVMPLIFISIVAAFTKIQIGEKFAKIGSLIFIFLIGTVTIAAIVGVVYALVFGLDASTINLGNAEQARGSEIAKQAKDLTAHTLPQQILELLPKNPFLDFTGQRATSTIAVVIFASFIGFAYLRVARKQPDHGELLKRAIDAIYSLVMAIVTFVLRLTPYGVLAIMANTLSTSDFGAIWTLGKFLIASYAALITMYIIHLIILSLLGISPIRYVKKTLEVLIFAFTSRSSAGALPLNVQTQTRRLGVPEGIANFAATFGLSIGQNGCAGIYPAMLAIMVAPVANVEIDLQFIVTLIAVVIISSFGVAGVGGGATFASILVLSTLNLPVALAGVLISVEPLIDMGRTALNVNDSMLAGTGTAKLTKHWDKDTFDSNDNAALTSH
>NZ_CP047809.1|WP_001289311.1|2370222_2370978_+|NADPH-dependent-oxidoreductase
MSEHVYNLVKKHHSVRKFKNKPLSEDVVKKLVEAGQSASTSSFLQAYSIIGIDDEKIKENLREVSGQPYVVENGYLFVFVIDYYRHHLVDQHAETDMENAYGSTEGLLVGAIDAALVAENIAVTAEDMGYGIVFLGSLRNDVERVREILDLPDYVFPVFGMAVGEPADDENGAAKPRLPFDHVFHHNKYHADKETQYAQMADYDQTISEYYDQRTNGNRKETWSQQIEMFLGNKARLDMLEQLQKSGLIQR
>NZ_CP047809.1|WP_000052781.1|2369161_2369731_-|peroxiredoxin
MSLINKEILPFTAQAFDPKKDQFKEVTQEDLKGSWSVVCFYPADFSFVCPTELEDLQNQYEELQKLGVNVFSVSTDTHFVHKAWHDHSDAISKITYTMIGDPSQTITRNFDVLDEATGLAQRGTFIIDPDGVVQASEINADGIGRDASTLAHKIKAAQYVRKNPGEVCPAKWEEGAKTLQPGLDLVGKI
>NZ_CP047809.1|WP_000930486.1|2367622_2369146_-|alkyl-hydroperoxide-reductase-subunit-F
MLNADLKQQLKQLLELMEGNVEFVASLGSDDKSKELKDLLTEITDMSPRLSLSEKSLKRTPSFSVNRPGEETGVTFAGIPLGHEFNSLVLAILQVSGRAPKEKQSIIDQIKKLEGSFHFETFISLTCQKCPDVVQALNLMSVINPNITHSMIDGAVFREESENIMAVPAVFLNGEEFGNGRMTIQDILSKLGSTADASEFENKEPYDVLIVGGGPASGSAAIYTARKGLRTGIVADRIGGQVNDTAGIENFITVKETTGSEFSSNLAAHIDQYDIDAMTGIRATDIEKTDEAIKVTLENGAVLESKTVIIATGAGWRKLNIPGEEQLINKGVAFCPHCDGPLFENKDVAVIGGGNSGVEAAIDLAGIVNHVTLFEFASELKADNVLQDRLRSLSNVDIKTNAKTTEVVGEDHVTGIRYEDMNTGEEHLLNLDGIFVQIGLLPNTSWLNDAVELNERGEIVIDRNNNTNVPGIFAAGDVTDQKNKQIIISMGAGANAALNAFDYIIRN
>NZ_CP047809.1|WP_001795623.1|2367250_2367544_-|hypothetical-protein
MINLIYTTRCAIMLKVCTSRKQINMKNDIEKEKYVNEIIMLLRTIPTSKLVQPIMQLFIDKAILNNVQNDALLIEKATHARNHLRLWSLQGHRDIPN
>NZ_CP047809.1|WP_000746687.1|2366551_2367178_-|NDxxF-motif-lipoprotein
MKKRLLLSTFLASTLILTGCASDQSDNEDHHTSTGIHAPKSAKKLETKDIFNSDKKNSDISDAEMKQAIEKYLSVNSDILDNKYIMQHKLDKQIDSQTKVTEKQAETLSHLSNLAVKNDLHFKKFVTENNIPKEYKKPVELMMNYFKALNSTIANVDEDIEKLSYQPQNKINVVDVPTKYAGDVNKKQQDKIKDFLKSKGIKSDVIDK
>NZ_CP047809.1|WP_000868248.1|2365913_2366297_-|hypothetical-protein
MKVRITFIILAILSTIVCLFLAAMHPTGPNTVTFEQPYLFTLNIIIMVLVALPSLVLAIYDYMSFRISSAILQFLGAISWFFLSLILSLTQFTPFTLASFITSIILFTSTIITLAIGGKSVEKNDSP
>NZ_CP047809.1|WP_000158374.1|2365266_2365848_+|histidine-phosphatase-family-protein
MTIYLVRHGESKSNYDNKHFRSYFCGQLDVPLTDTGTKSADDLCDYFKEKQIKHVYVSDLLRTQQTFEHIFPYDIASTTTPLLRERSLGVFEGEYKDEISANPKYEKYFNDPNFKDFRHSFSQKAPEGESYEDVYQRVEHFMNHVVNEDTQKDDIVIVAHQVVIRCLMVYFNKVSRAEAVDLKVENCKPYIIE
>NZ_CP047809.1|WP_000211676.1|2364879_2365089_-|hypothetical-protein
MTTQSFIFMNIILLDGATQRHPFFICQILAFLFPKFPHINLLLFNPILSTFSNIIIHIDHFHANKKDDN
>NZ_CP047809.1|WP_000956132.1|2373423_2374380_-|hypothetical-protein
MLTKEFAQRVELSEKQVRKIVQHLEERGYQLSKTEYRGREATDFKEEDIELFKDIADKVKQTNSYDLAFDELEKEKDFLQVIVKNDDKNLPTNQNVAQLVEDLRLEIQKMREERHLLGQMMNQVHQQQQELKELQNQLTSKIDSNSESLKAIQTSQEAIQEAQASQAKALAESTNKVEKNAVTEDKADSKDSKVAGVNTSTDAKTDTKAENAGDGTATKVDKEDQISATEAIEKASVEQSKNDNAAETSNKEATVDAEAQHDAEQQVAEAHAEASKQATSNDSLEAKAENDSTASQSEMSEPKPQEEKKGFFARLFNL
>NZ_CP047809.1|WP_000394698.1|2374497_2375160_-|hypothetical-protein
MEFKTIQSVKDPHYNEALKLYDTKLNLSLTEDKRIIKRSLENNKTENDYVFIVGLENDVVVSLATAHYEATTNSAFLIYLFAKDLPNHDELMTQTLHQIEHELNLLSNLVHSRSINFLMMEVPKEPADLTQDNGLIIEHRRQFLYEHQFERQTEIDYIHPTNDGHTKKVDLFLKKNIKLTKDIYGTSVKSNYILKYVFANGIAREIIYALLEEMDLRKPF
>NZ_CP047809.1|WP_000763768.1|2375302_2375710_-|hypothetical-protein
MADITVVNDTGELYNVINQKKSEGYLESELTIISKSKLHLNDLHDSEISLISTSGTFSDRMTKLLTGEDGEHAVLSRYNLAPDELEKYKQLILDDKMLVVAVRDKSSHQEVHENNSAYEEIDITHFAEASKGPKA
>NZ_CP047809.1|WP_000421410.1|2376222_2376801_+|xanthine-phosphoribosyltransferase
MELLGQKVKEDGVVIDEKILKVDGFLNHQIDAKLMNEVGRTFYEQFKDKGITKILTIEASGIAPAIMAALHFDVPCLFAKKAKPSTLTDGYYETSIHSFTKNKTSTVIVSKEFLSEEDTVLIIDDFLANGDASLGLYDIAQQANAKTAGIGIVVEKSFQNGHQRLEEAGLTVSSLCKVASLEGNKVTLVGEE
>NZ_CP047809.1|WP_000793009.1|2376800_2378069_+|purine-permease
MKNLILSVQHLLAMYAGAILVPIIVGTSLKFTPEQIAYLVTVDIFMCGVATFLQANKVTGTGLPIVLGCTFTAVAPMILIGQTKGIDVLYGSLFLSGILVIIIAPFFSHLVKFFPPVVTGSVVTIIGINLMPVAMNYLAGGQGAKDYGDVKNILLGLMTLIIILLLQRFTTGFIKSIAILIGLVLGTIGAGLLGMVDINQVNHAGWLGIPVPFRFSGFSFDVTSTLVFFIVAIVSLIESTGVYHALSEITGKKLERKDFRKGYTAEGLAIVLGSIFNSFPYTAYSQNVGLVSLSGAKKNNVIYGMVVLLLICGCIPKLGALANIIPLPVLGGAMIAMFGMVMAYGVSILGHIDFKNQNNLLIIAVSVGLGTGISAVPQAFKGLGEQFAWLTQNGIVLGAISAIILNFFFNGIKYKQTEENVK
>NZ_CP047809.1|WP_000264071.1|2378106_2379573_+|IMP-dehydrogenase
MWESKFAKESLTFDDVLLIPAQSDILPKDVDLSVQLSDKVKLNIPVISAGMDTVTESKMAIAMARQGGLGVIHKNMGVEEQADEVQKVKRSENGVISNPFFLTPEESVYEAEALMGKYRISGVPIVDNKEDRNLVGILTNRDLRFIEDFSIKIVDVMTQENLITAPVNTTLEEAEKILQKHKIEKLPLVKDGRLEGLITIKDIEKVIEFPNAAKDEHGRLLVAAAIGISKDTDIRAQKLVEAGVDVLVIDTAHGHSKGVIDQVKHIKKTYPEITLVAGNVATAEATKDLFEAGADIVKVGIGPGSICTTRVVAGVGVPQITAIYDCATEARKHGKAIIADGGIKFSGDIIKALAAGGHAVMLGSLLAGTEESPGATEIFQGRQYKVYRGMGSLGAMEKGSNDRYFQEDKAPKKFVPEGIEGRTAYKGALQDTIYQLMGGVRAGMGYTGSHDLRELREEAQFTRMGPAGLAESHPHNIQITKESPNYSF
>NZ_CP047809.1|WP_000424966.1|2379597_2381139_+|glutamine-hydrolyzing-GMP-synthase
MEMAKEQELILVLDFGSQYNQLITRRIREMGVYSELHDHEISIEEIKKMNPKGIILSGGPNSVYEEGSFTIDPEIYNLGIPVLGICYGMQLTTKLLGGKVERANEREYGKAIINAKSDELFAGLPAEQTVWMSHSDKVIEIPEGFEVIADSPSTDYAAIEDKKRRIYGVQFHPEVRHTEYGNDLLNNFVRRVCDCRGQWTMENFIEIEIEKIRQRVGDRRVLCAMSGGVDSSVVAVLLHKAIGDQLTCIFVDHGLLRKGEGDMVMEQFGEGFNMNIIRVNAKDRFMNKLKGVSDPEQKRKIIGNEFVYVFDDEASKLKGVDFLAQGTLYTDVIESGTKTAQTIKSHHNVGGLPEDMEFELIEPINTLFKDEVRKLGIELGIPEHLVWRQPFPGPGLGIRVLGEITEDKLEIVRESDAILRQVIREEGLEREIWQYFTVLPNIQSVGVMGDYRTYDHTVGIRAVTSIDGMTSDFARIDWEVLQKISSRIVNEVDHVNRVVYDITSKPPSTIEWE
>NZ_CP047809.1|WP_000551776.1|2381251_2381788_-|hypothetical-protein
MHNNNEFNKKLKDFIGSDKRMALVKGYVNEYKLTTVLRALNNSDYTKGTIHTRSIGNLKQIVDNRIIPKNITQNTIFKLSNLTLEVNLYERNTIYHGDFAIYYPVESALIIETDTPRLINHINNNPVQKIFIITTNDWSFNTLELEKIVDETIIYDLKQEDPKQYEILYKNKHGKLPY
>NZ_CP047809.1|WP_000041883.1|2382180_2382885_-|type-II-toxin-antitoxin-system-PemK/MazF-family-toxin
MSKNINQANSKLNTSNKKLKQAYSKSDSKNMKVIYMPHWLEFYSIAIHSDVTSNKKRYYKSYSRGTVVYVKLGSNIGSEFSGNHFCVILDNKDNKGKETVTIVPLSSKGNKNYLKLNESVLNLTATDLKKQIIDISSKVQALAQKYREIDIKLSTEDKKLLSNLNQKANELYRVIGVYSKHKGKDTYVNISAITTISKRRISKINDSDPTGTIIISEDDMNEIEKQLKIKFFSN
>NZ_CP047809.1|WP_000159787.1|2383283_2383556_-|transposase
MTKERRTFSSEFKLQMVRLYKNGKLKNEIIRKYDLKPSIISNSIKQHQNTGPFNHQDNLKSDEKELIKLRKEVQHLKMEHDVLKQILKLI

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Crispr_ID: NZ_CP047809_7

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP047809_7

2626488-2626580

Orphan

Consensus_repeat	Method
CTAAAGGTGAAGAGGAACGCAGTTGGATGCTA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP047809_7

>merge|NZ_CP047809|7|2626488-2626580|CRISPRCasFinder
CTAAAGGTGAAGAGGAACGCAGTTGGATGCTAAGGCACAACTGCATAAAAGCCTCTAATCGCTAAAGATGAAGAGGAACGCAGTTGGATGCTA

>NZ_CP047809|7|5|2626488-2626580|CRISPRCasFinder
CTAAAGGTGAAGAGGAACGCAGTTGGATGCTA	AGGCACAACTGCATAAAAGCCTCTAATCG
CTAAAGATGAAGAGGAACGCAGTTGGATGCTA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP047809.1\|WP_001200748.1\|2621886_2622897_+\|alcohol-dehydrogenase-AdhP	unknown	unknown	gnl\|CDD\|181842
NZ_CP047809.1\|WP_000901764.1\|2625634_2626270_+\|endonuclease-III-domain-containing-protein	unknown	unknown	gnl\|CDD\|225140
NZ_CP047809.1\|WP_000169042.1\|2635365_2635590_-\|DUF2922-domain-containing-protein	unknown	unknown	gnl\|CDD\|378571
NZ_CP047809.1\|WP_000735558.1\|2630327_2630834_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP047809.1\|WP_000633782.1\|2618322_2618859_+\|flavodoxin-family-protein	unknown	unknown	gnl\|CDD\|223728
NZ_CP047809.1\|WP_001819741.1\|2623204_2623588_+\|DUF1934-family-protein	unknown	unknown	gnl\|CDD\|226896
NZ_CP047809.1\|WP_000362967.1\|2629391_2630192_+\|alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|223669
NZ_CP047809.1\|WP_000365354.1\|2628688_2629408_+\|HAD-family-hydrolase	unknown	unknown	gnl\|CDD\|223943
NZ_CP047809.1\|WP_000477504.1\|2619027_2619504_+\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|366181
NZ_CP047809.1\|WP_001790232.1\|2627683_2628634_+\|iron-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|376439
NZ_CP047809.1\|WP_000655099.1\|2622971_2623079_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP047809.1\|WP_001021145.1\|2623584_2625246_+\|arginine--tRNA-ligase	unknown	unknown	gnl\|CDD\|234964
NZ_CP047809.1\|WP_001813976.1\|2626708_2627536_+\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|238563
NZ_CP047809.1\|WP_001222133.1\|2630995_2631712_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP047809.1\|WP_000808902.1\|2617173_2618112_+\|aldo/keto-reductase	unknown	unknown	gnl\|CDD\|381309
NZ_CP047809.1\|WP_000180230.1\|2619543_2620839_+\|HD-domain-containing-protein	unknown	unknown	gnl\|CDD\|224004
NZ_CP047809.1\|WP_001553862.1\|2634241_2635171_-\|DMT-family-transporter	unknown	unknown	gnl\|CDD\|225778
NZ_CP047809.1\|WP_001045421.1\|2631880_2632669_+\|alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|223669
NZ_CP047809.1\|WP_001788287.1\|2620866_2621388_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|378039
NZ_CP047809.1\|WP_001018677.1\|2632919_2633294_-\|transcriptional-regulator	unknown	unknown	gnl\|CDD\|130944

Protein	Function_ID	Function_description	E-value
NZ_CP047809.1\|WP_001200748.1\|2621886_2622897_+\|alcohol-dehydrogenase-AdhP	gnl\|CDD\|181842	PRK09422, PRK09422, ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional.	0
NZ_CP047809.1\|WP_000901764.1\|2625634_2626270_+\|endonuclease-III-domain-containing-protein	gnl\|CDD\|225140	COG2231, COG2231, Uncharacterized protein related to Endonuclease III [DNA replication, recombination, and repair].	3.98158e-90
NZ_CP047809.1\|WP_000169042.1\|2635365_2635590_-\|DUF2922-domain-containing-protein	gnl\|CDD\|378571	pfam11148, DUF2922, Protein of unknown function (DUF2922). This bacterial family of proteins has no known function.	1.74707e-13
NZ_CP047809.1\|WP_000633782.1\|2618322_2618859_+\|flavodoxin-family-protein	gnl\|CDD\|223728	COG0655, WrbA, Multimeric flavodoxin WrbA [General function prediction only].	3.16348e-26
NZ_CP047809.1\|WP_001819741.1\|2623204_2623588_+\|DUF1934-family-protein	gnl\|CDD\|226896	COG4506, COG4506, Uncharacterized protein conserved in bacteria [Function unknown].	9.50091e-54
NZ_CP047809.1\|WP_000362967.1\|2629391_2630192_+\|alpha/beta-hydrolase	gnl\|CDD\|223669	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only].	7.17592e-26
NZ_CP047809.1\|WP_000365354.1\|2628688_2629408_+\|HAD-family-hydrolase	gnl\|CDD\|223943	COG1011, COG1011, Predicted hydrolase (HAD superfamily) [General function prediction only].	3.6864e-38
NZ_CP047809.1\|WP_000477504.1\|2619027_2619504_+\|GNAT-family-N-acetyltransferase	gnl\|CDD\|366181	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family. This family contains proteins with N-acetyltransferase functions such as Elp3-related proteins.	1.13315e-11
NZ_CP047809.1\|WP_001790232.1\|2627683_2628634_+\|iron-ABC-transporter-permease	gnl\|CDD\|376439	pfam01032, FecCD, FecCD transport family. This is a sub-family of bacterial binding protein-dependent transport systems family. This Pfam entry contains the inner components of this multicomponent transport system.	5.19191e-48
NZ_CP047809.1\|WP_001045421.1\|2631880_2632669_+\|alpha/beta-hydrolase	gnl\|CDD\|223669	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only].	1.55978e-34
NZ_CP047809.1\|WP_001021145.1\|2623584_2625246_+\|arginine--tRNA-ligase	gnl\|CDD\|234964	PRK01611, argS, arginyl-tRNA synthetase; Reviewed.	0
NZ_CP047809.1\|WP_001813976.1\|2626708_2627536_+\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|238563	cd01143, YvrC, Periplasmic binding protein YvrC. These proteins are predicted to function as initial receptors in ABC transport of metal ions in eubacteria and archaea. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains.	1.32108e-72
NZ_CP047809.1\|WP_000808902.1\|2617173_2618112_+\|aldo/keto-reductase	gnl\|CDD\|381309	cd19083, AKR_AKR11A1_11D1, AKR11A and AKR11D families of aldo-keto reductase (AKR). Bacillus subtilis aldo-keto reductase IolS, also called vegetative protein 147 (VEG147), is a founding member of aldo-keto reductase family 11 member A1 (AKR11A1). It is able to reduce the standard aldo-keto reductase (AKR) substrates DL-glyceraldehyde, D-erythrose, and methylglyoxal in the presence of NADPH, albeit with poor efficiency in vitro. Bacillus aryabhattai aldo keto reductase is a founding member of aldo-keto reductase family 11 member D1 (AKR11D1).	7.3194e-168
NZ_CP047809.1\|WP_000180230.1\|2619543_2620839_+\|HD-domain-containing-protein	gnl\|CDD\|224004	COG1078, COG1078, HD superfamily phosphohydrolases [General function prediction only].	1.70707e-150
NZ_CP047809.1\|WP_001553862.1\|2634241_2635171_-\|DMT-family-transporter	gnl\|CDD\|225778	COG3238, COG3238, Uncharacterized protein conserved in bacteria [Function unknown].	7.93315e-37
NZ_CP047809.1\|WP_001788287.1\|2620866_2621388_+\|hypothetical-protein	gnl\|CDD\|378039	pfam08741, YwhD, YwhD family. This family of proteins are currently uncharacterized. They are around 170 amino acids in length.	8.7406e-98
NZ_CP047809.1\|WP_001018677.1\|2632919_2633294_-\|transcriptional-regulator	gnl\|CDD\|130944	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family. This model represents a family of transcriptional regulatory proteins in Staphylococcus aureus and Staphylococcus epidermidis. Some members contain two tandem copies of this region. This family is related to the MarR transcriptional regulator family described by pfam01047. [Regulatory functions, DNA interactions].	1.77309e-26

>NZ_CP047809.1|WP_000901764.1|2625634_2626270_+|endonuclease-III-domain-containing-protein
MLGTDELYKVLYEHLGPQFWWPADNDIEMMLGAILVQNTRWRNAEIALNQIKEHTHFNPNHILELPIETLQSLIHSSGFYKSKSLTIKTLLTWLARHHFNYQEINERYKGGLRKELLSLKGIGSETADVLLVYIFGRIEFIPDSYTRKIYDKLGYENTKNYDQLKKVVTLPNHFTNQDANEFHALLDVFGKHYFRDKDIKNYDFLEPYFKK
>NZ_CP047809.1|WP_001021145.1|2623584_2625246_+|arginine--tRNA-ligase
MNIIDQVKQTLVEEIAASINKAGLADEIPDIKIEVPKDTKNGDYATNIAMVLTKIAKRNPREIAQAIVDNLDTEKAHVKQIDIAGPGFINFYLDNQYLTAIIPEAIEKGDQFGHVNESKGQNVLLEYVSANPTGDLHIGHARNAAVGDALANILTAAGYNVTREYYINDAGNQITNLARSIETRFFEALGDNSYSMPEDGYNGKDIIEIGKDLAEKHPEIKDYSEEARLKEFRKLGVEYEMAKLKNDLAEFNTHFDNWFSETSLYEKGEILEVLAKMKELGYTYEADGATWLRTTDFKDDKDRVLIKNDGTYTYFLPDIAYHFDKVKRGNDILIDLFGADHHGYINRLKASLETFGVDSNRLEIQIMQMVRLMENGKEVKMSKRTGNAITLREIMDEVGVDAARYFLTMRSPDSHFDFDMELAKEQSQDNPVYYAQYAHARICSILKQAKEQGIEVTAANDFTTITNEKAIELLKKVADFEPTIESAAEHRSAHRITNYIQDLASHFHKFYNAEKVLTDDIEKTKAHVAMIEAVRITLKNALAMVGVSAPESM
>NZ_CP047809.1|WP_001819741.1|2623204_2623588_+|DUF1934-family-protein
MLKQHNEKEKFEFTTEGTWQQRQSNFIRYVEQIEDATVNVTIKVDDDSVKLIRKGDINMNLHFVEGQTTTTFYDISAGRIPLEVKTLRILHFVSGDGGKLKIHYELYQDNEKMGSYQYEINYKEIGE
>NZ_CP047809.1|WP_000655099.1|2622971_2623079_+|hypothetical-protein
MKDSENLVFFGFEVLFVFYKMAYIYEALIKYGIVN
>NZ_CP047809.1|WP_001200748.1|2621886_2622897_+|alcohol-dehydrogenase-AdhP
MRAAVVTKDHKVSIEDKKLRALKPGEALVQTEYCGVCHTDLHVKNADFGDVTGVTLGHEGIGKVIEVAEDVESLKIGDRVSIAWMFESCGRCEYCTTGRETLCRSVKNAGYTVDGAMAEQVIVTADYAVKVPEKLDPAAASSITCAGVTTYKAVKVSNVKPGQWLGVFGIGGLGNLALQYAKNVMGAKIVAFDINDDKLAFAKELGADAIINSKDVDPVAEVMKLTDNKGLDATVVTSVAKTPFNQAVDVVKAGARVVAVGLPVDKMNLDIPRLVLDGIEVVGSLVGTRQDLREAFEFAAENKVTPKVQLRKLEEINDIFEEMENGTITGRMVIKF
>NZ_CP047809.1|WP_001788287.1|2620866_2621388_+|hypothetical-protein
MEVISLSEKKGFNFNIIKNDPLDGHKGTNIGSISLDNIAPVFIDVANKEAFIDIGGMHARAKVEKGVKWITDKAAVEGDEAKEYWLCWVTTERNEQGPYYAGLTACYLLVNKAIRRGYKSMPEHVNMMDKSMKHHIIIDQIGDENKAILKDFLMNHDEGMWKHSSDALHQAFN
>NZ_CP047809.1|WP_000180230.1|2619543_2620839_+|HD-domain-containing-protein
MTNAYVDLKLVEEKVFKDPIHRYIHVEDQLIWDLIKTKEFQRLRRIRQLGTLYLSFHTAEHSRFGHSLGVYEIVRRLIDESFIGHDAWDNKDRPLALCAALLHDLGHGPFSHSFEKIFNTDHEAYTQAIITGDTEVNAVLRKVAPEFPREVAEVINKTHHNKLVISMISSQIDADRMDYLQRDAYFTGVSYGAFDMERILRLMRPSKDEVLIKESGMHAVENFIMSRYQMYWQIYFHPVSRGGEVLLNNCLKRAKQLYNEGYEFKLHPHDFIPFFEETVTIEQYVELDEAVVTYYLEKWTKEDDAILSDLASRFINRDLFKYIPFDGSIITISELQELFEAGGINPDYYFVSEAFSDLPYDYDRPGSNRKPIHLLRQDGTIREISNQSLVIHSITGINRQDYKLYYPREMVAKIKDKTIREAIENLINELN
>NZ_CP047809.1|WP_000477504.1|2619027_2619504_+|GNAT-family-N-acetyltransferase
MFKVRQATEKDVVQIRDVATKAWFNTYLNIYAATTVNHLLEASYNEHHLKKRLQEQLFLVVEEGNDIVGFANFIYGEELYLSAHYVKPESQHTGYGTALLNEGLSRFEDKFEGVYLEVDNKNEEAVAYYKEQGFTILRSYEPEMYGEKLDLALMYKAF
>NZ_CP047809.1|WP_000633782.1|2618322_2618859_+|flavodoxin-family-protein
MITVLFGGSRPNGNTAQLTKFALQDLEYQWIDVTQHQFKPIRDVRHTAETITSYDDDYLPILDKILASDTIIFASPVYWYSISAPLKAFIEHWSETLQDKRYPNFKAQMAEKDFRVILVGGDCPKIKAKPAITQMKYSLDFLGATLNGYIIGTAEKPGDIMKDNYALARATEWNSILQ
>NZ_CP047809.1|WP_000808902.1|2617173_2618112_+|aldo/keto-reductase
MKQFVNLGKSDVEVFPIALGTNAVGGHNLYPNLDEEQGKDVVRQAINHGINLLDTAYIYGPERSEELVGEVVKEYPREQIKIATKGSHEFDENQEVHQNNQPEYLKQQVENSLKRLQTDYIDLYYIHFPDNNTPKDQAVAALQELKEQGKIKAIGVSNFTLDQLKEANKDGYVDVVQLEYNLLHRENEAVLQYCVDHQITFIPYFPLASGILAGKYDENTKFSDHRTTRRDFKPGVFEENVRRVKALESIAAAHQTSIANIVLAFYLTRPAIDVIIPGAKRAEQVVENIKAADIVLSDDEIQYIDELFPIED
>NZ_CP047809.1|WP_001813976.1|2626708_2627536_+|ABC-transporter-substrate-binding-protein
MKDNDKQGSNDNGSSKSPYHRIVSLMPSNTEILYELGLGKYIVGVSTVDDYPKDVKKGKKQFDALNLNKEELLKAKPDLILAHESQKATANKVLSSLEKQGIKVVYVKDAQSIDETYNTFKQIGKLTHHDKQAEQLVEETKDNIDKVIDSIPAHHKKSKVFIEVSSKPEIYTAGKHTFFNDMLEKLEAQNVYSDINGWNPVTKESIIKKNPDILISTEAKTRSDYMDIIKKRGGFNKINAVKNTRIEVVNGDEVSRPGPRIDEGLKELRDAIYRK
>NZ_CP047809.1|WP_001790232.1|2627683_2628634_+|iron-ABC-transporter-permease
MTFNKVLLSWIVILIITTSIYLFWQLGDINDVFNQSILINVRLPRLLEALLTGMILTVAGLIFQTVLNNALADSFTLGLASGATFGSGLALFLGLTTLWIPVFSITFSLITLITVLVITSVLSQGYPVRILILSGLMIGALFNSLLYFLILLKPRKLNTIANYLFGGFGDAEYSNVSIIAITFIIALFGIFIILNQLKLLQLGELKSQSLGLNVQLITYIALCIASMITAINVAYVGIIGFIGMVIPQLIRKWQWKQSLGRQLALNIVTGGQIMVMADFIGSHILSPVQIPASIIIALIGIPVLFYMLISQSKRLH
>NZ_CP047809.1|WP_000365354.1|2628688_2629408_+|HAD-family-hydrolase
MDLNQIKAVVFDLEGTLLDRVKSREKFIEEQYERFHDYLIHVQLADFKKAFIELDDDEDNDKPDLYKEIIKRFHVDRLTWKDLFNDFEMHFYRYVFPYYDTLYTLEKLSQKGFQIGVIANGKSKIKQFRLHSLGLMHVINYLSTSETVGFRKPHPKIFEDMIDQLGVLPEQIMYVGDDALNDVAPARAMGMVSVWYKQEDAEIEPLEEEVDFTITTVEELLTILPIKNDNKGENYGSIY
>NZ_CP047809.1|WP_000362967.1|2629391_2630192_+|alpha/beta-hydrolase
MDLFTRKDGTSIHYSTLGEGYPIVLIHTVLDNYSVFNKLAAELAKSFQVVLIDLRGHGYSDKPRHIEIKDFSDDIVELLKYLYIEEVAFVCHEMGGIIGADISVRYPEFTSSLTLVNPTSIEGELPEERLFRKYAHIIRNWDPEKQDKFLNKRKYYRPRKMNRFLKHVVDTNEISTKEEIQAVKEVFKNADISQTYRNVVVPTKIIAGEFGERTTRLEAKEVADLIQNADFEVYQESSAFPFVEEQERFVEDTAAFINKHHDEKHV
>NZ_CP047809.1|WP_000735558.1|2630327_2630834_+|hypothetical-protein
MKKLLTASIIACSVVMGVGLVNTSAEAASGNSIDTVKQLIKGDQSLENVKIGESIKDVLTKYKNPMYSYNEDGTEHYYEFHTKKGMLLVTTDGKKNNGKVTHISMMYNDANGPTYQAVKNYVGKAVTHTEYSKVAGNFGYIEKGKTTYQFASAPKDKNIKLYRIDLEK
>NZ_CP047809.1|WP_001222133.1|2630995_2631712_+|hypothetical-protein
MRINDKILLENIEDYFNHKGLSPHLIDDIKEKVITDIKNSEKKDQDYIEYKRKSPAQIILMIQRNLFALQMNPVIFFIINFILISYLYDKQYVQFQAITGMSLFYCLVIFPMTIVVYLRVSQKNYLRSNKIEMIMGTIIAIISLLLIILQAFNITWGVIPITNFGHQFFFFIGIILVIAGIFYKRLEFSGIGLLFCQKTVDAMIHNPQSAQIFSLIIWILLVVLVIYFTIRLSSRTRL
>NZ_CP047809.1|WP_001045421.1|2631880_2632669_+|alpha/beta-hydrolase
MNKVTINPQIQLTYQIEGKGDPIILLHGLDGNLAGFEDLQHQLASSYKVLTYDLRGHGKSSKSESYDLNDHVEDLKILMEKLNIHEAHILGHDLGGVVAKLFTDKYAYRVKSLTTIASKKDDLIHSFTQLLIQYQDDIAGFNKSEAYILLFSKLFRNQEKTMKWYQKQRIYSIKSEDDSAVAIRSLILHKDEPMYLKKRTCVPTLLINGEHDPLIKDKNHFKLEAHFLNVTKKIFEHSGHAPHIEEPEAFMNYYLKFLKSVS
>NZ_CP047809.1|WP_001018677.1|2632919_2633294_-|transcriptional-regulator
MAITKINDCFELLSMVTYADKLKSLIKKEFSISFEEFAVLTYISENKEKEYYLKDIINHLNYKQPQVVKAVKILSQEDYFDKKRNEHDERTVLILVNAQQRKKIESLLSRVNKRITEANNEIEL
>NZ_CP047809.1|WP_001553862.1|2634241_2635171_-|DMT-family-transporter
MLLFYIIGVLVGMLIPIQTSVNSRLSLYTKSPFYTSFISFSVGTICLIILNIIINPEVFTIHFYNNQSFNYTWVVGGLLGVSFLTGNLLLLPKLGATLTVIATVAGQIIMGVIIDTFGLFGATIHDFNLIKAIGVLLLIVGIVIMNQFNKNNLLLTDQKYLLFWLLLGFIFGFFPPIQTTINSALASHTHSPAFASLVSFTIGSIALLILTAIFNRSLKLKTSHLKFGKLKPIYFTGGILGMAFVTANIILMPHMGAALTTLIGMFGQILMGILIDHFGLFGSPKIAMTSRKTIGLLCILTGIILLRLF
>NZ_CP047809.1|WP_000169042.1|2635365_2635590_-|DUF2922-domain-containing-protein
MTKTLELSFKSSLDKPVKLQLPQLNNVVTEQVARDSMNALVDLNIIKSNSGTITKVHSAQIIDKTTTVLFEDKK

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Crispr_ID: NZ_CP047809_8

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP047809_8

2742362-2742444

Orphan

Consensus_repeat	Method
CCAATTTCTACAGACAATGCAAGTTGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP047809_8

>merge|NZ_CP047809|8|2742362-2742444|CRISPRCasFinder
CCAATTTCTACAGACAATGCAAGTTGGCGGGGCCCCAACATAGAGAAATTGGAACGCCAATTTCTACAGACAATGCAAGTTGG

>NZ_CP047809|8|6|2742362-2742444|CRISPRCasFinder
CCAATTTCTACAGACAATGCAAGTTGG	CGGGGCCCCAACATAGAGAAATTGGAACG
CCAATTTCTACAGACAATGCAAGTTGG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP047809.1\|WP_000499195.1\|2752183_2752339_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP047809.1\|WP_001068497.1\|2746446_2747313_-\|DMT-family-transporter	unknown	unknown	gnl\|CDD\|223769
NZ_CP047809.1\|WP_161575764.1\|2745926_2746427_-\|NADPH-dependent-7-cyano-7-deazaguanine-reductase-QueF	unknown	unknown	gnl\|CDD\|223851
NZ_CP047809.1\|WP_000663030.1\|2740261_2741320_+\|histidinol-phosphate-transaminase	unknown	unknown	gnl\|CDD\|235106
NZ_CP047809.1\|WP_000692521.1\|2748114_2748513_+\|class-Ib-ribonucleoside-diphosphate-reductase-assembly-flavoprotein-NrdI	unknown	unknown	gnl\|CDD\|224694
NZ_CP047809.1\|WP_000589260.1\|2737537_2738515_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224050
NZ_CP047809.1\|WP_001790641.1\|2743900_2744002_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP047809.1\|WP_000022323.1\|2729950_2730955_+\|biotin-dependent-carboxyltransferase-family-protein	unknown	unknown	gnl\|CDD\|224895
NZ_CP047809.1\|WP_000876318.1\|2752377_2753349_+\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|226965
NZ_CP047809.1\|WP_000193751.1\|2744080_2745586_-\|peptide-MFS-transporter	unknown	unknown	gnl\|CDD\|225646
NZ_CP047809.1\|WP_000429014.1\|2742892_2743810_-\|diacylglycerol-kinase-family-lipid-kinase	unknown	unknown	gnl\|CDD\|224513
NZ_CP047809.1\|WP_001790169.1\|2728962_2729169_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP047809.1\|WP_000180991.1\|2738507_2740022_+\|ABC-transporter-permease/substrate-binding-protein	unknown	unknown	gnl\|CDD\|270328
NZ_CP047809.1\|WP_000562498.1\|2750698_2751670_+\|class-1b-ribonucleoside-diphosphate-reductase-subunit-beta	unknown	unknown	gnl\|CDD\|275027
NZ_CP047809.1\|WP_000098285.1\|2731428_2733369_+\|polyglycerol-phosphate-lipoteichoic-acid-synthase-LtaS	unknown	unknown	gnl\|CDD\|224287
NZ_CP047809.1\|WP_000855505.1\|2748475_2750581_+\|class-1b-ribonucleoside-diphosphate-reductase-subunit-alpha	unknown	unknown	gnl\|CDD\|236069
NZ_CP047809.1\|WP_000525111.1\|2733639_2735523_+\|ABC-F-family-ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|223562
NZ_CP047809.1\|WP_000983677.1\|2735534_2737316_+\|DNA-helicase-RecQ	unknown	unknown	gnl\|CDD\|273594
NZ_CP047809.1\|WP_000708692.1\|2729256_2729967_+\|allophanate-hydrolase-subunit-1	unknown	unknown	gnl\|CDD\|224960
NZ_CP047809.1\|WP_000197271.1\|2741670_2742213_+\|5'-3'-deoxyribonucleotidase	unknown	unknown	gnl\|CDD\|226895

Protein	Function_ID	Function_description	E-value
NZ_CP047809.1\|WP_001068497.1\|2746446_2747313_-\|DMT-family-transporter	gnl\|CDD\|223769	COG0697, RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only].	3.8323e-10
NZ_CP047809.1\|WP_000663030.1\|2740261_2741320_+\|histidinol-phosphate-transaminase	gnl\|CDD\|235106	PRK03158, PRK03158, histidinol-phosphate aminotransferase; Provisional.	0
NZ_CP047809.1\|WP_000692521.1\|2748114_2748513_+\|class-Ib-ribonucleoside-diphosphate-reductase-assembly-flavoprotein-NrdI	gnl\|CDD\|224694	COG1780, NrdI, Protein involved in ribonucleotide reduction [Nucleotide transport and metabolism].	5.52807e-56
NZ_CP047809.1\|WP_000589260.1\|2737537_2738515_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224050	COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism].	4.80291e-155
NZ_CP047809.1\|WP_161575764.1\|2745926_2746427_-\|NADPH-dependent-7-cyano-7-deazaguanine-reductase-QueF	gnl\|CDD\|223851	COG0780, COG0780, Enzyme related to GTP cyclohydrolase I [General function prediction only].	2.39672e-78
NZ_CP047809.1\|WP_000022323.1\|2729950_2730955_+\|biotin-dependent-carboxyltransferase-family-protein	gnl\|CDD\|224895	COG1984, DUR1, Allophanate hydrolase subunit 2 [Amino acid transport and metabolism].	1.25641e-144
NZ_CP047809.1\|WP_000876318.1\|2752377_2753349_+\|ABC-transporter-permease	gnl\|CDD\|226965	COG4606, CeuB, ABC-type enterochelin transport system, permease component [Inorganic ion transport and metabolism].	1.32603e-150
NZ_CP047809.1\|WP_000983677.1\|2735534_2737316_+\|DNA-helicase-RecQ	gnl\|CDD\|273594	TIGR01389, recQ, ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ. [DNA metabolism, DNA replication, recombination, and repair].	0
NZ_CP047809.1\|WP_000429014.1\|2742892_2743810_-\|diacylglycerol-kinase-family-lipid-kinase	gnl\|CDD\|224513	COG1597, LCB5, Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase [Lipid metabolism / General function prediction only].	3.10512e-78
NZ_CP047809.1\|WP_000197271.1\|2741670_2742213_+\|5'-3'-deoxyribonucleotidase	gnl\|CDD\|226895	COG4502, COG4502, 5'(3')-deoxyribonucleotidase [Nucleotide transport and metabolism].	1.15481e-107
NZ_CP047809.1\|WP_000180991.1\|2738507_2740022_+\|ABC-transporter-permease/substrate-binding-protein	gnl\|CDD\|270328	cd13610, PBP2_ChoS, Substrate-binding domain ChoS of an osmoregulated ABC-type transporter and related proteins; type 2 periplasmic-binding protein fold. Osmoprotectant binding lipoprotein ChoS of Lactococcus lactis is predicted to be involved in uptake of compatible solutes such as choline and glycine betaine, but the relative substrate preference is not known. To counteract the efflux of water, microorganisms accumulate the compatible solutes for a sustained adjustment to high osmolarity surroundings. ChoS belongs to the type 2 periplasmic binding fold protein superfamily (PBP2). The PBP2 proteins are typically comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	3.03165e-152
NZ_CP047809.1\|WP_000562498.1\|2750698_2751670_+\|class-1b-ribonucleoside-diphosphate-reductase-subunit-beta	gnl\|CDD\|275027	TIGR04171, ribonucleotide-diphosphate_reductase_subunit_beta, ribonucleoside-diphosphate reductase, class 1b, beta subunit. Members of this family are NrdF, the beta subunit of class 1b ribonucleotide reductase. This form uses a dimanganese moiety associated with a tyrosine radical to reduce the cellular requirement for iron. [Purines, pyrimidines, nucleosides, and nucleotides, 2'-Deoxyribonucleotide metabolism].	2.30551e-164
NZ_CP047809.1\|WP_000098285.1\|2731428_2733369_+\|polyglycerol-phosphate-lipoteichoic-acid-synthase-LtaS	gnl\|CDD\|224287	COG1368, MdoB, Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily [Cell envelope biogenesis, outer membrane].	0
NZ_CP047809.1\|WP_000855505.1\|2748475_2750581_+\|class-1b-ribonucleoside-diphosphate-reductase-subunit-alpha	gnl\|CDD\|236069	PRK07632, PRK07632, ribonucleotide-diphosphate reductase subunit alpha; Validated.	0
NZ_CP047809.1\|WP_000525111.1\|2733639_2735523_+\|ABC-F-family-ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|223562	COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only].	0
NZ_CP047809.1\|WP_000193751.1\|2744080_2745586_-\|peptide-MFS-transporter	gnl\|CDD\|225646	COG3104, PTR2, Dipeptide/tripeptide permease [Amino acid transport and metabolism].	1.22605e-172
NZ_CP047809.1\|WP_000708692.1\|2729256_2729967_+\|allophanate-hydrolase-subunit-1	gnl\|CDD\|224960	COG2049, DUR1, Allophanate hydrolase subunit 1 [Amino acid transport and metabolism].	1.29969e-94

>NZ_CP047809.1|WP_000197271.1|2741670_2742213_+|5'-3'-deoxyribonucleotidase
MTRKSIAIDMDEVLADTLGEIIDAVNFRADLGIKMEALNGQKLKHVIPEHDGLITEVLREPGFFRHLKVMPYAQEVVKKLTEHYDVYIATAAMDVPTSFSDKYEWLLEFFPFLDPQHFVFCGRKNIVKADYLIDDNPRQLEIFTGTPIMFTAVHNINDDRFERVNSWKDVEQYFLDNIEK
>NZ_CP047809.1|WP_000663030.1|2740261_2741320_+|histidinol-phosphate-transaminase
MKEQLNQLSAYQPGLSPRALKEKYGIEGDLYKLASNENLYGPSPKVKEAISAHLDELYYYPETGSPTLKAAISKHLNVDQSRILFGAGLDEVILMISRAVLTPGDTIVTSEATFGQYYHNAIVESANVIQVPLKDGGFDLEGILKEVNEDTSLVWLCNPNNPTGTYFNHESLDSFLSQVPPHVPVIIDEAYFEFVTAEDYPDTLALQQKYDNAFLLRTFSKAYGLAGLRVGYVVASEHAIEKWNIIRPPFNVTRISEYAAVAALEDQQYLKEVTHKNSVERERFYQLPQSEYFLPSQTNFIFVKTKRVNELYEALLNVGCITRPFPTGVRITIGFKEQNDKMLEVLSNFKYE
>NZ_CP047809.1|WP_000180991.1|2738507_2740022_+|ABC-transporter-permease/substrate-binding-protein
MTNFFDILSERKGQLFSTMIEHIQISFIALLIATAIAVPLGILLTKTKTISEIVMNIAAILQTIPSLALLGLMIPLFGIGRVPAIIALVVYALLPILRNTYTGIKEVDPSLIEAAKGIGMKPFRRLTKVELPIAMPVIMAGVRTAMVLIIGTATLAALIGAGGLGDLILLGIDRNNASLILLGAIPAALLAIIFDLILRFMAKLSYKKLLMTLGVIVMIIILAIAIPMFAQKGDKITLAGKLGSEPSIITNMYKILIEEETKNTVEVKDGMGKTAFLFNALKSDDIDGYLEFTGTVLGELTKEPLKSKEEKKVYEQAKQSLEKKYQMTMLKPMKYNNTYALAVKRDFAKQHNIRTIGDLNKVKDQLKPGFTLEFNDRPDGYKAVQKAYNLNLDNIRTMEPKLRYQAINKGNINLIDAYSTDAELKQYDMVVLKDDKHVFPPYQGAPLFKESFLKKHPEIKKPLNKLENKISDEDMQMMNYKVTVKNEDPYTVAKDYLKAKGLIK
>NZ_CP047809.1|WP_000589260.1|2737537_2738515_+|ABC-transporter-ATP-binding-protein
MIKFKNVTKRYGKHVAVDNISFNINEGEFFVLIGPSGCGKTTTLKMINRLIHLSEGYIYFKDKPISDYPVYEMRWDIGYVLQQIALFPHMTIKENIAQVPQMKKWKEKDIDKRVDELLEMVGLEPEKYKNRKPDELSGGQRQRVGVIRALAADPPVILMDEPFSALDPISREKLQDDLIELQTKIKKTIIFVTHDIQEAMKLGDKICLLNEGHIEQIDTPEGFKNNPQSEFVKQFMGSHLEDDAPCVEENAIIRDLDIMKPIDEVTSMSAYPIVYDNQPIEVLYQLLSESERVIVMQEDSVGQYVIDRKDIFKYLSQKKEVAQHD
>NZ_CP047809.1|WP_000983677.1|2735534_2737316_+|DNA-helicase-RecQ
MMQQTLSHYFGYETFRPGQEEIISKVLDHRNVLGVLPTGGGKSICYQVPGLLLGGTTIVISPLISLMKDQVDQLKAMGIQAAFLNSSLTQKEQQRIEKALSNGEIQFLYVAPERFENRYFLNMLQRIKIHLVAFDEAHCISKWGHDFRPSYQNVISKVFTLPQDFTIIALTATATVEVQQDIREKLNIAQTDQIKTSTKRRNLIFKVNPTYQRQKFILDYIKTHDEDAGIIYCSTRKQVEELQEALESQKIESVIYHAGLSNKEREEAQNDFLFDRVKVVVATNAFGMGIDKSNVRFVIHYNMPGDLESYYQEAGRAGRDGLKSECILLFSERDINLHEYFITVSQADDDYKDKMGEKLTKMIQYTKTKKCLEATIVHYFEPNEKLEECEQCSNCVQQDKSYNMTQEAKMIISCIARMKQQESYSVIIQVLRGESTDYIKYKGYDQISTHGLMKGYTTSELSHLIDELRFKGFLNENDEILMCDTSIKKLLSNEVEVFTTPFKQKATEKVFINTVEGVDRVLFSQLVEVRKKLSDKLTIAPVSIFSDYTLEEFAKRKPASKQDMINIDGVGSYKLKHYCPAFLETIQNYKAKV
>NZ_CP047809.1|WP_000525111.1|2733639_2735523_+|ABC-F-family-ATP-binding-cassette-domain-containing-protein
MGMEAYKIEHLNKSYADKTIFDNLDLSISEGEKIGLVGINGTGKSTLLKVIGGIDDDFTANVMHPNQYRIRYSSQKQDLNEDMTVFDAVLSSDTTTLRIIKQYEQAVQAYADDQSDKLFKRMMDAQDAMDQHDAWDYNAEIKTILSKLGIHDTTKYIKELSGGQQKRVVLAKTLIEQPDLLLLDEPTNHLDFESISWLINYVKQYPHTVLFVTHDRYFLNEVSTRIIELNRGKLASYPGNYESYIEMRAEREVTLQKQQQKQRALYKEELAWMRAGAKARTTKQQARINRFNDLENEVNQQYKDDKGELNLAYSRLGKQVFELEDLSKAINDKVLFEHLTEIIQKGERIGVVGPNGAGKTTLLNILSGEDQQFEGKLKTGQTVKVAYFKQTDETLDRDIRMIDYLREESEIAKEKDGTSVSITQLLERFLFPSATHGKKVYKLSGGEQKRLYLLRLLVHQPNVLLLDEPTNDLDTETLTILEDYIHTFGGTVITVSHDRYFLNKVAQSYWFIHDGQMEKIIGTFEDYESYKKSLDKNKSTLKQQSKSSTTVRKKNGLSYKEKLEYEQLMKRIEQAEVRMEEIDVLMIEASADYGKIKELNEEKEQLEIQYDLDITRWSELEEIKEQQ
>NZ_CP047809.1|WP_000098285.1|2731428_2733369_+|polyglycerol-phosphate-lipoteichoic-acid-synthase-LtaS
MSSQKKKISLFAFFLLTVITITLKTYFSYYVDFSLGVKGLVQNLILLMNPYSLVALVLSVFLFFKGKKAFWFMFIGGFLLTFLLYANVVYFRFFSDFLTFSTLNQVGNVESMGGAVSASFKWYDFVYFIDTLVYLFILIFKTKWLDTKAFSKKFVPVVMAASVALFFLNLAFAETDRPELLTRTFDHKYLVKYLGPYNFTVYDGVKTIENNQQKALASEDDLTKVLNYTKQRQTEPNPEYYGVAKKKNIIKIHLESFQTFLINKKVNGKEVTPFLNKLSSGKEQFTYFPNFFHQTGQGKTSDSEFTMDNSLYGLPQGSAFSLKGDNTYQSLPAILDQKQGYKSDVMHGDYKTFWNRDQVYKHFGIDKFYDATYYDMSDKNVVNLGLKDKIFFKDSANYQAKMKSPFYSHLITLTNHYPFTLDEKDATIEKSNTGDATVDGYIQTARYLDEALEEYINDLKKKGLYDNSVIMIYGDHYGISENHNNAMEKLLGEKITPAKFTDLNRTGFWIKIPGKSGGINNEYAGQVDVMPTILHLAGIDTKNYLMFGTDLFSKGHNQVVPFRNGDFITKDYKYVNGKIYSNKNNELITTQPADFEKNKKQVEKDLEMSDNVLNGDLFRFYKNPDFKKVNPSKYKYETGPKANSKK
>NZ_CP047809.1|WP_000022323.1|2729950_2730955_+|biotin-dependent-carboxyltransferase-family-protein
MSIIIEKSGLFSSFQDFGRRGYEHDGVIPCGALDTLAHEIANRLVANDKNEATLEMTNKMATIRFTEPTLIALAGGNVKAYTEHMTISPYKLYLLDKGDVLKFRETSYTSRVYLAVGGGFELDAWLGSNSTDFNVKIGGFKGRTLQDGDEIKLKRDYTARHHKLFENLAHTKQTDWGIDGYALSFNYMSDVFHVVKNKGTEDFKEDAIQRFVKHDYKVTSKANRMGMMLEGEKIKAFYEDMPPYQTVKKGTIQIKRDGTPIILLNDHYTLGSYPQIGTIASYHLTKLAQKPQGSRLKFQFIDILTAEKNLVKYSNWLNQLFHGIEYRMQLEMMK
>NZ_CP047809.1|WP_000708692.1|2729256_2729967_+|allophanate-hydrolase-subunit-1
MKIYSQGDQAIVVAIEKEVSKSLTEDLLTLRSYLIEQNYPFIIEIVPSESDMMIVYDARDMIKHHNIQSPFLYMKALIESIHLNIKHDFNQQDLIEIPIVYGSKYGPDLESLLKHYKIKLETFIELHSKAQYFVSMMGYSPGFPYLTGLNKKLYINHTSKQKKFIPAGSVVLEGKKCGIVTTDTINDWLVIGYTPLSLFNPKESDFARLKLGDNIKFRPINENELEVGAFKDVNHN
>NZ_CP047809.1|WP_001790169.1|2728962_2729169_+|hypothetical-protein
MIIVYIVLLLILVYVNYRLVNRLLSENRIYVVRLIATITTVISFILVYALIHELMPFVVRAMDLMYHQ
>NZ_CP047809.1|WP_000429014.1|2742892_2743810_-|diacylglycerol-kinase-family-lipid-kinase
MENKYTHGVLFYHEHSGLKNINQGIGEVTTALSSICKHLSIQLSENEGDIIKYCQEIKTKNYAKDVDILFILGGDGTVNELINGVMTHDLQLPIGILPGGTFNDFTKTLNIAPNHKQASEQMISAQVGTYDVIKINNQYALNFVGLGLIVQNAENVQDGSKDIFGKLSYIGSTVKTLLNPTQFNYQLSIDDKTYSGETTMILTANGPFIGGSRIPLTDLSPQDGELNTFIFNEQSFSILNDIFKKRDSMNWNEITQGIEHIPGKKISLTTDPAMKVDIDGEISLETPIDIEVIPNAIQLLTVNDL
>NZ_CP047809.1|WP_001790641.1|2743900_2744002_+|hypothetical-protein
MVINEIDFYRVGRENIVIAVYNEHIKFLFILIS
>NZ_CP047809.1|WP_000193751.1|2744080_2745586_-|peptide-MFS-transporter
MTQQNSHGNQIQDIPQTGFFGHPRGLGVLFFVEFWERFSYYGMRALLIFYMYFAVTDNGLGIDKTTAMSIMSVYGSLIYMTSIPGGWIADRITGTRGATLLGAVFIIIGHICLSLPFALIGLFTSMFFIIIGSGLMKPNISNIVGRLYPENDRRMDAGFVIFYMSVNMGALLSPIILQHFVNVKNFHGGFLIAAVGMALGLVWYVLFNRKNLGSVGMKPTNPLTPAEKKKYGLIIGSVVLAIVLIIVIGALTNSLSFNLVSNTVLVLGIALPIIYFTLIIRSKDVTDTERSRVKAFIPLFILGMVFWAIQEQGSNVLNIYGIEHSDMKLNLFGWKTNFGEAIFQSINPLFILLLAPIISLLWQKLGTKQPSLPVKFAIGTFLAGASYILIGIVGYASGSSNFSVNWVILSYIICVIGELCLSPTGNSAAVKLAPKAFNAQMMSIWYLTNASAQAINGTLVKLIEPLGQTNYFIFLGVVAIIVTTIVLAFSPLIIKAMKGIR
>NZ_CP047809.1|WP_161575764.1|2745926_2746427_-|NADPH-dependent-7-cyano-7-deazaguanine-reductase-QueF
MAHGRQQDELQDITLLGNQDNTYNFDYRPDVLESFDNKHQGRDYFVKFNCPEFTSLCPITGQPDFATIYISYIPNVKMVESKSLKSYLFSFRNHGDFHEDCMNIIMNDLIELMDPHYIEVWGKFTPRGGISIDPYTNYGRPNSKYEKMAEHRLMNHDLYPEKIDNR
>NZ_CP047809.1|WP_001068497.1|2746446_2747313_-|DMT-family-transporter
MNPKVKGIIAILISAIGFSFMSVFFRLAGDLPVFQKSLARNLVAMFIPLFFIYKYHQPMFGRLSSQPLLITRSTLGLIGVLLNIYAIDHMVLSDADSLMKLNPFWTILLSIVFLHEKVRKYQITAMIIAILGMLLIVKPEFSSSMIPSLAGLFSGIFAASAYTCVRALSTREAPYTIVFYFSLFSVIVLIPFTAYTYEPMSQMQILYLLGAGLAAAVGQIGVTLAYSFAAAKDISIFTYASIIFTAILGFILFGESPDFYATLGYVVIIGASYYMFEKARRDAKIIKK
>NZ_CP047809.1|WP_000692521.1|2748114_2748513_+|class-Ib-ribonucleoside-diphosphate-reductase-assembly-flavoprotein-NrdI
MKIIYFSFTGNVRRFIKRTELENTLEITAENCMEPVHEPFIIVTGTIGFGEVPEPVQSFLEVNHQYIRGVAASGNRNWGLNFAKAGRTISEEYNVPLLMKFELHGKNKDVIEFKNKVGNFNENHGREKVQSY
>NZ_CP047809.1|WP_000855505.1|2748475_2750581_+|class-1b-ribonucleoside-diphosphate-reductase-subunit-alpha
MKTMEEKKYNHIELNNEVTKRREDGFFSLEKDQEALVAYLEEVKDKTIFFDTEIERLRYLVDNDFYFNVFDIYSEADLIEITDYAKSIPFNFASYMSASKFFKDYALKTNDKSQYLEDYNQHVAIVALYLANGNKAQAKQFISAMVEQRYQPATPTFLNAGRARRGELVSCFLLEVDDSLNSINFIDSTAKQLSKIGGGVAINLSKLRARGEAIKGIKGVAKGVLPIAKSLEGGFSYADQLGQRPGAGAVYLNIFHYDVEEFLDTKKVNADEDLRLSTISTGLIVPSKFFDLAKEGKDFYMFAPHTVKEEYGVTLDDIDLEKYYDDMVANPNVEKKKKNAREMLNLIAQTQLQSGYPYLMFKDNANRVHPNSNIGQIKMSNLCTEIFQLQETSIINDYGIEDEIKRDISCNLGSLNIVNVMESGKFRDSVHSGMDALTVVSDVANIQNAPGVRKANSELHSVGLGVMNLHGYLAKNKIGYESEEAKDFANIFFMMMNFYSIERSMEIAKERGIKYQDFEKSDYANGKYFEFYTTQEFEPQFEKVRELFDGMAIPTSEDWKKLQQDVEQYGLYHAYRLAIAPTQSISYVQNATSSVMPIVDQIERRTYGNAETFYPMPFLSPQTMWYYKSAFNTDQMKLIDLIATIQTHIDQGISTILYVNSEISTRELARLYVYAHYKGLKSLYYTRNKLLSVEECTSCSI
>NZ_CP047809.1|WP_000562498.1|2750698_2751670_+|class-1b-ribonucleoside-diphosphate-reductase-subunit-beta
MIAVNWNTQEDMTNMFWRQNISQMWVETEFKVSKDIASWKTLSEAEQDTFKKALAGLTGLDTHQADDGMPLVMLHTTDLRKKAVYSFMAMMEQIHAKSYSHIFTTLLPSSETNYLLDEWVLEEPHLKYKSDKIVANYHKLWGKEASIYDQYMARVTSVFLETFLFFSGFYYPLYLAGQGKMTTSGEIIRKILLDESIHGVFTGLDAQHLRNELSESEKQKADQEMYKLLNDLYLNEESYTKMLYDDLGITEDVLNYVKYNGNKALSNLGFEPYFEEREFNPIIENALDTTTKNHDFFSVKGDGYVLALNVEALQDDDFVFDNK
>NZ_CP047809.1|WP_000499195.1|2752183_2752339_+|hypothetical-protein
MFYFTLSKQNTHSEKLNFSLIANINKIDTKLFERLLKLWSKNATINEKYYQ
>NZ_CP047809.1|WP_000876318.1|2752377_2753349_+|ABC-transporter-permease
MKYLLKGNILLLLLILLTIISLFIGVSELSIKDLLHLTESQRNILFSSRIPRTMSILIAGSSLALAGLIMQQMMQNKFVSPTTAGTMEWAKLGILIALLFFPTGHILLKLVFAVICSICGTFLFVKIIDFIKVKDVIFVPLLGIMMGGIVASFTTFISLRTNAVQSIGNWLNGNFAIITSGRYEILYLSIPLLALTYLFANHFTIVGMGKDFTNNLGLSYEKLINIALFITATITALVVVTVGTLPFLGLVIPNIISIYRGDHLKNAIPHTMMLGAIFVLFSDIVGRIVVYPYEINIGLTIGVFGTIIFLILLMKGRKNYAQQ

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Crispr_ID: NZ_CP047809_9

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP047809_9

2783416-2783496

Unclear

Consensus_repeat	Method
TTCTTTATGTTGGGGCCCCGCCAACT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP047809_9

>merge|NZ_CP047809|9|2783416-2783496|CRISPRCasFinder
TTCTTTATGTTGGGGCCCCGCCAACTTGCATTGTTTGTAGAATTTCTTTTCGAAATTCTTTATGTTGGGGCCCCGCCAACT

>NZ_CP047809|9|7|2783416-2783496|CRISPRCasFinder
TTCTTTATGTTGGGGCCCCGCCAACT	TGCATTGTTTGTAGAATTTCTTTTCGAAA
TTCTTTATGTTGGGGCCCCGCCAACT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP047809.1\|WP_000513308.1\|2784670_2785510_+\|prolipoprotein-diacylglyceryl-transferase	unknown	unknown	gnl\|CDD\|183527
NZ_CP047809.1\|WP_000662681.1\|2780279_2783126_+\|excinuclease-ABC-subunit-UvrA	unknown	unknown	gnl\|CDD\|234734
NZ_CP047809.1\|WP_000538141.1\|2777134_2777785_+\|HD-domain-containing-protein	unknown	unknown	gnl\|CDD\|378993
NZ_CP047809.1\|WP_000749380.1\|2776121_2776961_+\|CHAP-domain-containing-protein	unknown	unknown	gnl\|CDD\|226451
NZ_CP047809.1\|WP_001790092.1\|2774329_2774434_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP047809.1\|WP_000006551.1\|2791288_2792233_+\|DNA-binding-protein-WhiA	unknown	unknown	gnl\|CDD\|273194
NZ_CP047809.1\|WP_000057542.1\|2786010_2787450_+\|tetratricopeptide-repeat-protein	unknown	unknown	gnl\|CDD\|276808
NZ_CP047809.1\|WP_000958224.1\|2783732_2784665_+\|HPr-kinase/phosphorylase	unknown	unknown	gnl\|CDD\|235459
NZ_CP047809.1\|WP_001790093.1\|2775866_2775974_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP047809.1\|WP_000816295.1\|2793635_2794538_-\|TIGR01777-family-protein	unknown	unknown	gnl\|CDD\|224015
NZ_CP047809.1\|WP_010956549.1\|2774602_2775713_+\|peptide-chain-release-factor-2	unknown	unknown	gnl\|CDD\|234799
NZ_CP047809.1\|WP_000134963.1\|2787516_2788452_+\|thioredoxin-disulfide-reductase	unknown	unknown	gnl\|CDD\|273540
NZ_CP047809.1\|WP_000617735.1\|2770770_2771343_+\|ribosome-associated-translation-inhibitor-RaiA	unknown	unknown	gnl\|CDD\|224461
NZ_CP047809.1\|WP_000369722.1\|2789275_2790187_+\|RNase-adapter-RapZ	unknown	unknown	gnl\|CDD\|224574
NZ_CP047809.1\|WP_000229253.1\|2778286_2780272_+\|excinuclease-ABC-subunit-UvrB	unknown	unknown	gnl\|CDD\|235395
NZ_CP047809.1\|WP_000638419.1\|2777781_2778018_+\|CsbA-family-protein	unknown	unknown	gnl\|CDD\|227234
NZ_CP047809.1\|WP_000506531.1\|2771756_2774288_+\|preprotein-translocase-subunit-SecA	unknown	unknown	gnl\|CDD\|237259
NZ_CP047809.1\|WP_001224793.1\|2785517_2786003_+\|acetyltransferase	unknown	unknown	gnl\|CDD\|100053
NZ_CP047809.1\|WP_001049165.1\|2792805_2793393_+\|ATP-dependent-Clp-endopeptidase-proteolytic-subunit-ClpP	unknown	unknown	gnl\|CDD\|178955
NZ_CP047809.1\|WP_001248939.1\|2790183_2791179_+\|YvcK-family-protein	unknown	unknown	gnl\|CDD\|211689

Protein	Function_ID	Function_description	E-value
NZ_CP047809.1\|WP_000749380.1\|2776121_2776961_+\|CHAP-domain-containing-protein	gnl\|CDD\|226451	COG3942, COG3942, Surface antigen [General function prediction only].	2.23913e-42
NZ_CP047809.1\|WP_000513308.1\|2784670_2785510_+\|prolipoprotein-diacylglyceryl-transferase	gnl\|CDD\|183527	PRK12437, PRK12437, prolipoprotein diacylglyceryl transferase; Reviewed.	1.39921e-119
NZ_CP047809.1\|WP_000662681.1\|2780279_2783126_+\|excinuclease-ABC-subunit-UvrA	gnl\|CDD\|234734	PRK00349, uvrA, excinuclease ABC subunit UvrA.	0
NZ_CP047809.1\|WP_000538141.1\|2777134_2777785_+\|HD-domain-containing-protein	gnl\|CDD\|378993	pfam12917, HD_2, HD containing hydrolase-like enzyme. This is a family of bacterial and archaeal hydrolases.	6.51021e-58
NZ_CP047809.1\|WP_000638419.1\|2777781_2778018_+\|CsbA-family-protein	gnl\|CDD\|227234	COG4897, CsbA, Uncharacterized protein conserved in bacteria [Function unknown].	4.73465e-34
NZ_CP047809.1\|WP_000958224.1\|2783732_2784665_+\|HPr-kinase/phosphorylase	gnl\|CDD\|235459	PRK05428, PRK05428, HPr kinase/phosphorylase; Provisional.	1.22623e-170
NZ_CP047809.1\|WP_000369722.1\|2789275_2790187_+\|RNase-adapter-RapZ	gnl\|CDD\|224574	COG1660, COG1660, Predicted P-loop-containing kinase [General function prediction only].	4.97899e-170
NZ_CP047809.1\|WP_000006551.1\|2791288_2792233_+\|DNA-binding-protein-WhiA	gnl\|CDD\|273194	TIGR00647, DNA_bind_WhiA, DNA-binding protein WhiA. This family describes a DNA-binding protein widely conserved in Gram-positive bacteria, and occasionally occurring elsewhere, such as in Thermotoga. It is associated with cell division, and in sporulating organisms with sporulation. [Cellular processes, Cell division].	7.40812e-153
NZ_CP047809.1\|WP_000816295.1\|2793635_2794538_-\|TIGR01777-family-protein	gnl\|CDD\|224015	COG1090, COG1090, Predicted nucleoside-diphosphate sugar epimerase [General function prediction only].	4.94096e-153
NZ_CP047809.1\|WP_010956549.1\|2774602_2775713_+\|peptide-chain-release-factor-2	gnl\|CDD\|234799	PRK00578, prfB, peptide chain release factor 2; Validated.	0
NZ_CP047809.1\|WP_000134963.1\|2787516_2788452_+\|thioredoxin-disulfide-reductase	gnl\|CDD\|273540	TIGR01292, Thioredoxin_reductase, thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (pfam00070). [Energy metabolism, Electron transport].	4.19425e-154
NZ_CP047809.1\|WP_000617735.1\|2770770_2771343_+\|ribosome-associated-translation-inhibitor-RaiA	gnl\|CDD\|224461	COG1544, COG1544, Ribosome-associated protein Y (PSrp-1) [Translation, ribosomal structure and biogenesis].	1.13584e-37
NZ_CP047809.1\|WP_000229253.1\|2778286_2780272_+\|excinuclease-ABC-subunit-UvrB	gnl\|CDD\|235395	PRK05298, PRK05298, excinuclease ABC subunit UvrB.	0
NZ_CP047809.1\|WP_001224793.1\|2785517_2786003_+\|acetyltransferase	gnl\|CDD\|100053	cd04647, LbH_MAT_like, Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins. MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates. MAT acetylates maltose and glucose exclusively while GAT specifically acetylates galactopyranosides. XAT catalyzes the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others. XATs are implicated in inactivating xenobiotics leading to xenobiotic resistance in patients. Members of this family contain a a left-handed parallel beta-helix (LbH) domain with at least 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). They are trimeric in their active form.	4.85181e-30
NZ_CP047809.1\|WP_000506531.1\|2771756_2774288_+\|preprotein-translocase-subunit-SecA	gnl\|CDD\|237259	PRK12904, PRK12904, preprotein translocase subunit SecA; Reviewed.	0
NZ_CP047809.1\|WP_000057542.1\|2786010_2787450_+\|tetratricopeptide-repeat-protein	gnl\|CDD\|276808	sd00008, TPR_YbbN, C-terminal Tetratricopeptide repeat (TPR) region of YbbN and similar motifs. The Tetratricopeptide repeat (TPR) typically contains 34 amino acids and is found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans. It is present in a variety of proteins including those involved in chaperone, cell-cycle, transcription, and protein transport complexes. YbbN is a thioredoxin-like protein containing two tandem TPR repeats at the C-terminus, separated by two alpha helices. Its N-terminal thioredoxin-like domain is not a functional oxidoreductase. It functions in heat stress response and DNA synthesis as a chaperone or co-chaperone.	3.57983e-06
NZ_CP047809.1\|WP_001049165.1\|2792805_2793393_+\|ATP-dependent-Clp-endopeptidase-proteolytic-subunit-ClpP	gnl\|CDD\|178955	PRK00277, clpP, ATP-dependent Clp protease proteolytic subunit; Reviewed.	4.59321e-148
NZ_CP047809.1\|WP_001248939.1\|2790183_2791179_+\|YvcK-family-protein	gnl\|CDD\|211689	TIGR01826, Putative_gluconeogenesis_factor, conserved hypothetical protein, cofD-related. This model represents a subfamily of conserved hypothetical proteins that forms a sister group to the family of CofD, (TIGR01819), LPPG:Fo 2-phospho-L-lactate transferase, an enzyme of cytochrome F420 biosynthesis. Both this family and TIGR01819 are within the scope of the pfam01933. [Hypothetical proteins, Conserved].	5.06652e-172

>NZ_CP047809.1|WP_000662681.1|2780279_2783126_+|excinuclease-ABC-subunit-UvrA
MKEPSIVVKGARAHNLKDIDIELPKNKLIVMTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMDKPDVDTIEGLSPAISIDQKTTSKNPRSTVATVTEIYDYIRLLYARVGKPYCPNHNIEIESQTVQQMVDRIMELEARTKIQLLAPVIAHRKGSHEKLIEDIGKKGYVRLRIDGEIVDVNDVPTLDKNKNHTIEVVVDRLVVKDGIETRLADSIETALELSEGQLTVDVIDGEDLKFSESHACPICGFSIGELEPRMFSFNSPFGACPTCDGLGQKLTVDVDLVVPDKDKTLNEGAIEPWIPTSSDFYPTLLKRVCEVYKINMDKPFKKLTERQRDILLYGSGDKEIEFTFTQRQGGTRKRTMVFEGVVPNISRRFHESPSEYTREMMSKYMTELPCETCHGKRLSREALSVYVGGLNIGEVVEYSISQALNYYKNIDLSEQDQAIANQILKEIISRLTFLNNVGLEYLTLNRASGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLINTLKEMRDLGNTLIVVEHDDDTMRAADYLVDIGPGAGEHGGQIVSSGTPQKVMKDKKSLTGQYLSGKKRIEVPEYRRPASDRKISIRGARSNNLKGVDVDIPLSIMTVVTGVSGSGKSSLVNEVLYKSLAQKINKSKVKPGLYDKIEGIDQLDKIIDIDQSPIGRTPRSNPATYTGVFDDIRDVFAQTNEAKIRGYQKGRFSFNVKGGRCEACKGDGIIKIEMHFLPDVYVPCEVCDGKRYNRETLEVTYKGKNIADILEMTVEEATQFFENIPKIKRKLQTLVDVGLGYVTLGQQATTLSGGEAQRVKLASELHKRSTGKSIYILDEPTTGLHVDDISRLLKVLNRLVENGDTVVIIEHNLDVIKTADYIIDLGPEGGSGGGTIVATGTPEDIAQTKSSYTGKYLKEVLERDKQNTEDK
>NZ_CP047809.1|WP_000229253.1|2778286_2780272_+|excinuclease-ABC-subunit-UvrB
MVEHYPFKIHSDFEPQGDQPQAIKEIVEGIKAGKRHQTLLGATGTGKTFTMSNVIKEVGKPTLIIAHNKTLAGQLYSEFKEFFPENRVEYFVSYYDYYQPEAYVPSTDTFIEKDASINDEIDQLRHSATSALFERDDVIIIASVSCIYGLGNPEEYKDLVVSVRVGMEMDRSELLRKLVDVQYTRNDIDFQRGTFRVRGDVVEIFPASKEELCIRVEFFGDEIDRIREVNYLTGEVLKEREHFAIFPASHFVTREEKLKVAIERIEKELEERLKELRDENKLLEAQRLEQRTNYDLEMMREMGFCSGIENYSVHLTLRPLGSTPYTLLDYFGDDWLVMIDESHVTLPQVRGMYNGDRARKQVLVDHGFRLPSALDNRPLKFEEFEEKTKQLVYVSATPGPYEIEHTDKMVEQIIRPTGLLDPKIEVRPTENQIDDLLSEIQTRVERNERVLVTTLTKKMSEDLTTYMKEAGIKVNYLHSEIKTLERIEIIRDLRMGTYDVIVGINLLREGIDIPEVSLVVILDADKEGFLRSNRSLIQTIGRAARNDKGEVIMYADKMTDSMKYAIDETQRRREIQMKHNEKHGITPKTINKKIHDLISATVENDENNDKAQTVIPKKMTKKERQKTIDNIEKEMKQAAKDLDFEKATELRDMLFELKAEG
>NZ_CP047809.1|WP_000638419.1|2777781_2778018_+|CsbA-family-protein
MIWYFSAAFFPCVLVVLFSVITRSKWVGTILTLILIGASIYKEYFHNEWIIFIDVVSLLAGYLIIDQLEFHKHQDEDR
>NZ_CP047809.1|WP_000538141.1|2777134_2777785_+|HD-domain-containing-protein
MGVHQYFKRLSDMERLIRLPGKFKYFEHNVAAHSFKVTKIAQYLATVEEYHGRKINWKSLYEKALNHDFAEVFTGDIKTPVKYASSELKKLFSQVEEEMVETFIEEEIPLQYRDVYKQRLQEGKDDSLEGQILSVADKIDLLYETFGEIQKRNPEELFFEIYEMSLETIIQFDHLASVQDFINNIIPEMLTENFIPRTELRETTMNILNKRKEENE
>NZ_CP047809.1|WP_000749380.1|2776121_2776961_+|CHAP-domain-containing-protein
MKKSLTVTVSSVLAFLALNNAAHAQQHGTQVKTPVQHNYVSNVQAQTQSPTTYTVVAGDSLYKIALEHHLTLNQLYSYNPGVTPLIFPGDVISLVPQNKVKQTKAVKSPVRKASQAKKVVKQPVQQASKKVVVKQAPKQAVTKTVNVAYKPAQVQKSVPTVPVAHNYNKSVANRGNLYAYGNCTYYAFDRRAQLGRSIGSLWGNANNWNYAAKVAGFKVDKTPEVGAIFQTAAGPYGHVGVVESVNPNGTITVSEMNYAGFNVKSSRTILNPGKYNYIH
>NZ_CP047809.1|WP_001790093.1|2775866_2775974_+|hypothetical-protein
MCLLKQHMQCAFSNITYGDFQGIELIIENVLNYMV
>NZ_CP047809.1|WP_010956549.1|2774602_2775713_+|peptide-chain-release-factor-2
MELSEIKRNIDKYNQDLTQIRGSLDLENKETNIQEYEEMMAEPNFWDNQTKAQDIIDKNNALKAIVNGYKTLQAEVDDMDATWDLLQEEFDEEMKEDLEQEVINFKAKVDEYELQLLLDGPHDANNAILELHPGAGGTESQDWANMLFRMYQRYCEKKGFKVETVDYLPGDEAGIKSVTLLIKGHNAYGYLKAEKGVHRLVRISPFDSSGRRHTSFASCDVIPDFNNDEIEIEINPDDITVDTFRASGAGGQHINKTESAIRITHHPSGIVVNNQNERSQIKNREAAMKMLKSKLYQLKLEEQAREMAEIRGEQKEIGWGSQIRSYVFHPYSMVKDHRTNEETGKVDAVMDGDIGPFIESYLRQTMSHD
>NZ_CP047809.1|WP_001790092.1|2774329_2774434_+|hypothetical-protein
MLWEESFYFTSVKYFKKCEEVVKRCYVLSFKKSV
>NZ_CP047809.1|WP_000506531.1|2771756_2774288_+|preprotein-translocase-subunit-SecA
MGFLSKILDGNNKEIKQLGKLADKVIALEEKTAILTDEEIRNKTKQFQTELADIDNVKKQNDYLDKILPEAYALVREGSKRVFNMTPYKVQIMGGIAIHKGDIAEMRTGEGKTLTATMPTYLNALAGRGVHVITVNEYLSSVQSEEMAELYNFLGLTVGLNLNSKTTEEKREAYAQDITYSTNNELGFDYLRDNMVNYSEDRVMRPLHFAIIDEVDSILIDEARTPLIISGEAEKSTSLYTQANVFAKMLKQDEDYKYDEKTKAVHLTEQGADKAERMFKVENLYDVQNVDVISHINTALRAHVTLQRDVDYMVVDGEVLIVDQFTGRTMPGRRFSEGLHQAIEAKEGVQIQNESKTMASITFQNYFRMYNKLAGMTGTAKTEEEEFRNIYNMTVTQIPTNKPVQRNDKSDLIYISQKGKFDAVVEDVVEKHKAGQPVLLGTVAVETSEYISNLLKKRGIRHDVLNAKNHEREAEIVAGAGQKGAVTIATNMAGRGTDIKLGEGVEELGGLAVIGTERHESRRIDDQLRGRSGRQGDKGDSRFYLSLQDELMIRFGSERLQKMMSRLGLDDSTPIESKMVSRAVESAQKRVEGNNFDARKRILEYDEVLRKQREIIYNERNSIIDEEDSSQVVDAMLRSTLQRSINYYINTADDEPEYQPFIDYINDIFLQEGDITEDDIKGKDAEDIFEVVWAKIEAAYQSQKDILEEQMNEFERMILLRSIDSHWTDHIDTMDQLRQGIHLRSYAQQNPLRDYQNEGHELFDIMMQNIEEDTCKFILKSVVQVEDNIEREKTTEFGEAKHVSAEDGKEKVKPKPIVKGDQVGRNDDCPCGSGKKFKNCHGK
>NZ_CP047809.1|WP_000617735.1|2770770_2771343_+|ribosome-associated-translation-inhibitor-RaiA
MIRFEIHGDNLTITDAIRNYIEEKIGKLERYFNDVPNAVAHVKVKTYSNSATKIEVTIPLKNVTLRAEERNDDLYAGIDLINNKLERQVRKYKTRINRKSRDRGDQEVFVAELQEMQETQVDNDAYDDNEIEIIRSKEFSLKPMDSEEAVLQMNLLGHDFFVFTDRETDGTSIVYRRKDGKYGLIQTSEQ
>NZ_CP047809.1|WP_000958224.1|2783732_2784665_+|HPr-kinase/phosphorylase
MLTTEKLVETLKLDLIAGEEGLSKPIKNADISRPGLEMAGYFSHYASDRIQLLGTTELSFYNLLPDKDRAGRMRKLCRPETPAIIVTRGLQPPEELVEAAKELNTPLIVAKDATTSLMSRLTTFLEHALAKTTSLHGVLVDVYGVGVLITGDSGIGKSETALELVKRGHRLVADDNVEIRQINKDELIGKPPKLIEHLLEIRGLGIINVMTLFGAGSILTEKRIRLNINLENWNKQKLYDRVGLNEETLSILDTEITKKTIPVRPGRNVAVIIEVAAMNYRLNIMGINTAEEFSERLNEEIIKNSHKSEE
>NZ_CP047809.1|WP_000513308.1|2784670_2785510_+|prolipoprotein-diacylglyceryl-transferase
MGIVFNYIDPVAFNLGPLSVRWYGIIIAVGILLGYFVAQRALVKAGLHKDTLVDIIFYSALFGFIAARIYFVIFQWPYYAENPSEIIKIWHGGIAIHGGLIGGFIAGVIVCKVKNLNPFQIGDIVAPSIILAQGIGRWGNFMNHEAHGGSVSRAFLEQLHLPNFIIENMYINGQYYHPTFLYESIWDVAGFIILVNIRKHLKLGETFFLYLTWYSIGRFFIEGLRTDSLMLTSNIRVAQLVSILLILISISLIVYRRIKYNPPLYSKVGALPWPTKKVK
>NZ_CP047809.1|WP_001224793.1|2785517_2786003_+|acetyltransferase
MRKFLSKTHHHTNPLWRVYRLVKFSKVFKNVIIIEFSKFIPSMVLKRHIYKQLLNINIGNQSSIAYKVMLDIFYPELITIGSNSVIGYNVTILTHEALVDEFRYGPVTIGSNTLIGANATILPGITIGDNVKVAAGTVVSKDIPDNGFAYGNPMYIKMIRR
>NZ_CP047809.1|WP_000057542.1|2786010_2787450_+|tetratricopeptide-repeat-protein
MAQKNNNVIPMTFDDAFYRKMAKQKFKQREYKRAAEYFEKVLELSPDDLEIQIDYAQCLVQLGIAKKAEHLFYDNIIYNRHLEDSFYELSQLNIEVNEPNKAFLFGINYVIVSDDQDYRDELDQMFDVKYQSEEQIELEAQLFVVQILFQYLFSQGRLKDAKNYVLHQPQEVQDHRVVRNLLAMCYLYLGEYDTAKALYEALLQEDSTDIYALCHYTLLLYNTKENEQYQKYLKILNKVVPMNDDESFKLGIVLSYLKQYRASQQLLYPLYKKGKFLSIQMYNALAYNYYYLGEEDESHYYWDKLKQISKVEIGHAPWVIENSKEVFDQHILPLLQSDDSHYRLYGIFLLDQLNGKEIVMTESIWQVLENLNNYEKLYLTYLVQGLTLNKLDFIHRGLLTLYHNELFVSENDVMVAWINQGELIIAEKVDLTDVEPYIGAFIYLYFKNQPRNVTKKQITTWLGITQYKLNKMIEFLLSI
>NZ_CP047809.1|WP_000134963.1|2787516_2788452_+|thioredoxin-disulfide-reductase
MTEIDFDIAIIGAGPAGMTAAVYASRANLKTVMIERGIPGGQMANTEEVENFPGFEMITGPDLSTKMFEHAKKFGAVYQYGDIKSVEDKGEYKVINFGNKELTAKAVIIATGAEYKKIGVPGEQELGGRGVSYCAVCDGAFFKNKRLFVIGGGDSAVEEGTFLTKFADKVTIVHRRDELRAQRILQDRAFKNDKIDFIWSHTLKSINEKDGKVGSVTLTSTKDGSEETHEADGVFIYIGMKPLTAPFKDLGITNDVGYIVTKDDMTTSVPGIFAAGDVRDKGLRQIVTATGDGSIAAQSAAEYIEHLNDQA
>NZ_CP047809.1|WP_000369722.1|2789275_2790187_+|RNase-adapter-RapZ
MDNNEKEKSKSELLVVTGLSGAGKSLVIQCLEDMGYFCVDNLPPVLLPKFVELMEQGNPSLRKVAIAIDLRGKELFNSLVAVVDKVKSESDVIIDVMFLEASTEKLISRYKETRRAHPLMEQGKRSLINAINDEREHLSQIRSIANFVIDTTKLSPKELKERIRRYYEDEEFETFTINVTSFGFKHGIQMDADLVFDVRFLPNPYYVVDLRPLTGLDKDVYNYVMKWKETEIFFEKLTDLLDFMIPGYKKEGKSQLVIAIGCTGGQHRSVALAERLGNYLNEVFEYNVYVHHRDAHIESGEKK
>NZ_CP047809.1|WP_001248939.1|2790183_2791179_+|YvcK-family-protein
MRQIKVVLIGGGTGLSVMARGLREFPIDITAIVTVADNGGSTGKIRDEMDIPAPGDIRNVIAALSDSESVLSQLFQYRFEENQISGHSLGNLLIAGMTNITNDFGHAIKALSKILNIKGRVIPSTNTSVQLNAVMEDGEIVFGETNIPKKHKKIDRVFLEPNDVQPMEEAIDALREADLIVLGPGSLYTSVISNLCVNGISDALIHSDAPKLYVSNVMTQPGETDGYSVKDHIDAIHRQAGQPFIDYVICSTQTFNAQVLKKYEEKHSKPVEVNKAELEKESINVKTSSNLVEISENHLVRHNTKVLSTMIYDIALELISTIPFVPSDKRK
>NZ_CP047809.1|WP_000006551.1|2791288_2792233_+|DNA-binding-protein-WhiA
MSFASEMKNELTRIDVDEMNAKAELSALIRMNGALSLSNQQFVINVQTENATTARRIYSLIKRVFNVEVEILVRKKMKLKKNNIYICRTKMKAKEILDELGILKDGIFTHEIDHSMIQDDEMRRSYLRGAFLAGGSVNNPETSSYHLEIFSQNESHAEGLTKLMNSYELNAKHLERKKGSITYLKEAEKISDFLSLIGGYQALLKFEDVRIVRDMRNSVNRLVNCETANLNKTVSAAMKQVESIKLIDKEIGIENLPDRLREIARIRVEHQEISLKELGEMVSTGPISKSGVNHRLRKLNDLADKIRNGEQIEL
>NZ_CP047809.1|WP_001049165.1|2792805_2793393_+|ATP-dependent-Clp-endopeptidase-proteolytic-subunit-ClpP
MNLIPTVIETTNRGERAYDIYSRLLKDRIIMLGSQIDDNVANSIVSQLLFLQAQDSEKDIYLYINSPGGSVTAGFAIYDTIQHIKPDVQTICIGMAASMGSFLLAAGAKGKRFALPNAEVMIHQPLGGAQGQATEIEIAANHILKTREKLNRILSERTGQSIEKIQKDTDRDNFLTAEEAKEYGLIDEVMVPETK
>NZ_CP047809.1|WP_000816295.1|2793635_2794538_-|TIGR01777-family-protein
MKQYLITGGTGMVGSQLVNEIKKSDSHITILTRHDQISNDKKISYVNWAKSGWEHKVPQNIDVVINLAGATLNKRWTPEYKQTLMLSRIQSTQALYELFKSRNKAPKALFNASATGYYPPDLFMSYTEVYKTLPFDFLSDIVYQWERFAQQFEQLGTRVVIGRFGIILSNEGGALQTMKLPYEYYIGGKLGSGQQWYSWIHINDLIQAILFLINNESASGPFNLTAPIPERQNLFGYTLARAMHKPHETWAPSLAMRLILGQMSTVVLDTQKVLPNKIQALGFQFKYSNLKMALEDLIKE

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Crispr_ID: NZ_CP047809_10

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP047809_10

2847108-2847189

Orphan

Consensus_repeat	Method
CCCCAACTTGCATTGTCTGTAGAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP047809_10

>merge|NZ_CP047809|10|2847108-2847189|CRISPRCasFinder
CCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCATCCCCAACTTGCATTGCCTGTAGAA

>NZ_CP047809|10|8|2847108-2847189|CRISPRCasFinder
CCCCAACTTGCATTGTCTGTAGAA	ATTGGGAATCCAATTTCTCTTTGTTGGGGCCCAT
CCCCAACTTGCATTGCCTGTAGAA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP047809.1\|WP_001065801.1\|2848124_2848421_+\|thioredoxin-family-protein	unknown	unknown	gnl\|CDD\|239245
NZ_CP047809.1\|WP_000150017.1\|2843100_2843817_+\|type-I-3-dehydroquinate-dehydratase	unknown	unknown	gnl\|CDD\|184156
NZ_CP047809.1\|WP_001018962.1\|2847745_2848132_+\|topiosmerase	unknown	unknown	gnl\|CDD\|224572
NZ_CP047809.1\|WP_000732326.1\|2850401_2851223_+\|MetQ/NlpA-family-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|224381
NZ_CP047809.1\|WP_000520233.1\|2849688_2850384_+\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224922
NZ_CP047809.1\|WP_000168845.1\|2853182_2853944_+\|Fe-S-cluster-assembly-ATPase-SufC	unknown	unknown	gnl\|CDD\|223473
NZ_CP047809.1\|WP_000589549.1\|2845052_2845409_+\|arsenate-reductase-family-protein	unknown	unknown	gnl\|CDD\|239334
NZ_CP047809.1\|WP_161575771.1\|2854041_2855349_+\|Fe-S-cluster-assembly-protein-SufD	unknown	unknown	gnl\|CDD\|223791
NZ_CP047809.1\|WP_000571218.1\|2848670_2849696_+\|methionine-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224058
NZ_CP047809.1\|WP_001183858.1\|2852003_2852855_-\|DUF368-domain-containing-protein	unknown	unknown	gnl\|CDD\|224946
NZ_CP047809.1\|WP_000974460.1\|2842530_2842953_-\|organic-hydroperoxide-resistance-protein	unknown	unknown	gnl\|CDD\|274649
NZ_CP047809.1\|WP_000422908.1\|2843899_2844439_+\|nitroreductase	unknown	unknown	gnl\|CDD\|380312
NZ_CP047809.1\|WP_000660172.1\|2846010_2846124_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP047809.1\|WP_001006454.1\|2855454_2856705_+\|cysteine-desulfurase	unknown	unknown	gnl\|CDD\|131034
NZ_CP047809.1\|WP_000569884.1\|2841637_2842132_-\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|372596
NZ_CP047809.1\|WP_001190695.1\|2844588_2844909_-\|thioredoxin-family-protein	unknown	unknown	gnl\|CDD\|239245
NZ_CP047809.1\|WP_000290485.1\|2845566_2845947_+\|glycine-cleavage-system-protein-GcvH	unknown	unknown	gnl\|CDD\|234918
NZ_CP047809.1\|WP_000255561.1\|2840865_2841483_-\|amino-acid-transporter	unknown	unknown	gnl\|CDD\|224198
NZ_CP047809.1\|WP_000752917.1\|2851576_2851771_+\|CsbD-family-protein	unknown	unknown	gnl\|CDD\|225777
NZ_CP047809.1\|WP_000932216.1\|2846125_2847004_+\|DUF1963-domain-containing-protein	unknown	unknown	gnl\|CDD\|226395

Protein	Function_ID	Function_description	E-value
NZ_CP047809.1\|WP_001065801.1\|2848124_2848421_+\|thioredoxin-family-protein	gnl\|CDD\|239245	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functional TRXs have been reported in most organisms; in eukaryotes, they are located in the cytoplasm and the mitochondria. Higher plants contain more types (at least 20 TRX genes have been detected in the genome of Arabidopsis thaliana), two of which (types f amd m) are located in the same compartment, the chloroplast. Also included in the alignment are TRX-like domains which show sequence homology to TRX but do not contain the redox active CXXC motif. Group II proteins, in addition to either a redox active TRX or a TRX-like domain, also contain additional domains, which may or may not possess homology to known proteins.	7.01368e-14
NZ_CP047809.1\|WP_000150017.1\|2843100_2843817_+\|type-I-3-dehydroquinate-dehydratase	gnl\|CDD\|184156	PRK13575, PRK13575, type I 3-dehydroquinate dehydratase.	1.26721e-148
NZ_CP047809.1\|WP_001018962.1\|2847745_2848132_+\|topiosmerase	gnl\|CDD\|224572	COG1658, COG1658, Small primase-like proteins (Toprim domain) [DNA replication, recombination, and repair].	2.45102e-36
NZ_CP047809.1\|WP_000732326.1\|2850401_2851223_+\|MetQ/NlpA-family-ABC-transporter-substrate-binding-protein	gnl\|CDD\|224381	COG1464, NlpA, ABC-type metal ion transport system, periplasmic component/surface antigen [Inorganic ion transport and metabolism].	2.15951e-112
NZ_CP047809.1\|WP_000520233.1\|2849688_2850384_+\|ABC-transporter-permease	gnl\|CDD\|224922	COG2011, AbcD, ABC-type metal ion transport system, permease component [Inorganic ion transport and metabolism].	9.67625e-100
NZ_CP047809.1\|WP_000168845.1\|2853182_2853944_+\|Fe-S-cluster-assembly-ATPase-SufC	gnl\|CDD\|223473	COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones].	1.29081e-150
NZ_CP047809.1\|WP_000589549.1\|2845052_2845409_+\|arsenate-reductase-family-protein	gnl\|CDD\|239334	cd03036, ArsC_like, Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.	1.06191e-56
NZ_CP047809.1\|WP_000932216.1\|2846125_2847004_+\|DUF1963-domain-containing-protein	gnl\|CDD\|226395	COG3878, COG3878, Uncharacterized protein conserved in bacteria [Function unknown].	1.16579e-75
NZ_CP047809.1\|WP_000571218.1\|2848670_2849696_+\|methionine-ABC-transporter-ATP-binding-protein	gnl\|CDD\|224058	COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism].	3.37873e-170
NZ_CP047809.1\|WP_001183858.1\|2852003_2852855_-\|DUF368-domain-containing-protein	gnl\|CDD\|224946	COG2035, COG2035, Predicted membrane protein [Function unknown].	4.58436e-76
NZ_CP047809.1\|WP_000974460.1\|2842530_2842953_-\|organic-hydroperoxide-resistance-protein	gnl\|CDD\|274649	TIGR03561, organ_hyd_perox, peroxiredoxin, Ohr subfamily. pfam02566, OsmC-like protein, contains several deeply split clades of homologous proteins. The clade modeled here includes the protein Ohr, or organic hydroperoxide resistance protein. [Cellular processes, Detoxification].	5.58225e-61
NZ_CP047809.1\|WP_000422908.1\|2843899_2844439_+\|nitroreductase	gnl\|CDD\|380312	cd02135, YdjA-like, nitroreductase family protein similar to Escherichia coli YdjA. A subfamily of the nitroreductase family containing uncharacterized proteins that are similar to nitroreductase YdjA from Escherichia coli. Nitroreductase catalyzes the reduction of nitroaromatic compounds such as nitrotoluenes, nitrofurans and nitroimidazoles. This process requires NAD(P)H as electron donor in an obligatory two-electron transfer and uses FMN as cofactor. The enzyme is typically a homodimer. Members of this family are also called NADH dehydrogenase, oxygen-insensitive NAD(P)H nitrogenase or dihydropteridine reductase.	2.10032e-49
NZ_CP047809.1\|WP_001006454.1\|2855454_2856705_+\|cysteine-desulfurase	gnl\|CDD\|131034	TIGR01979, Probable_cysteine_desulfurase, cysteine desulfurases, SufSfamily. This model represents a subfamily of NifS-related cysteine desulfurases involved in FeS cluster formation needed for nitrogen fixation among other vital functions. Many cysteine desulfurases are also active as selenocysteine lyase and/or cysteine sulfinate desulfinase. This subfamily is associated with the six-gene SUF system described in E. coli and Erwinia as an FeS cluster formation system during oxidative stress. The active site Cys is this subfamily resembles GHHC with one or both His conserved. [Biosynthesis of cofactors, prosthetic groups, and carriers, Other].	0
NZ_CP047809.1\|WP_000569884.1\|2841637_2842132_-\|GNAT-family-N-acetyltransferase	gnl\|CDD\|372596	pfam13420, Acetyltransf_4, Acetyltransferase (GNAT) domain.	2.53639e-47
NZ_CP047809.1\|WP_001190695.1\|2844588_2844909_-\|thioredoxin-family-protein	gnl\|CDD\|239245	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functional TRXs have been reported in most organisms; in eukaryotes, they are located in the cytoplasm and the mitochondria. Higher plants contain more types (at least 20 TRX genes have been detected in the genome of Arabidopsis thaliana), two of which (types f amd m) are located in the same compartment, the chloroplast. Also included in the alignment are TRX-like domains which show sequence homology to TRX but do not contain the redox active CXXC motif. Group II proteins, in addition to either a redox active TRX or a TRX-like domain, also contain additional domains, which may or may not possess homology to known proteins.	2.70086e-24
NZ_CP047809.1\|WP_000255561.1\|2840865_2841483_-\|amino-acid-transporter	gnl\|CDD\|224198	COG1279, COG1279, Lysine efflux permease [General function prediction only].	9.12336e-62
NZ_CP047809.1\|WP_000752917.1\|2851576_2851771_+\|CsbD-family-protein	gnl\|CDD\|225777	COG3237, COG3237, Uncharacterized protein conserved in bacteria [Function unknown].	5.95583e-07
NZ_CP047809.1\|WP_161575771.1\|2854041_2855349_+\|Fe-S-cluster-assembly-protein-SufD	gnl\|CDD\|223791	COG0719, SufB, Cysteine desulfurase activator SufB [Posttranslational modification, protein turnover, chaperones].	7.62407e-136
NZ_CP047809.1\|WP_000290485.1\|2845566_2845947_+\|glycine-cleavage-system-protein-GcvH	gnl\|CDD\|234918	PRK01202, PRK01202, glycine cleavage system protein GcvH.	2.81086e-68

>NZ_CP047809.1|WP_000932216.1|2846125_2847004_+|DUF1963-domain-containing-protein
MLNIQDVSHLSKKEQKAYNRFVESVENGNLPVLPCIEMDLKEMQEETLNQSKIGGMPFLKSFKDIPLDENNVPMVLLAQINLDDLPEQQELFPVKEGILQFWISSEDQMYGMSENLKGNNINSRLVYIKEPITDLSLENIQAHLKSLDADNEDIPFSGAFSIEFRLSKQTITCTDYKYDEDVLALWNKVNPSFALKSMFGGYDELMEPVCNTFTAKEPFNQLGGYPYFDQIDPRTNDQELKMYDRVLLQIDSTRDGNSSIIWGDLGIANILVKSTDLEAMKFDDYMYSWDCS
>NZ_CP047809.1|WP_000660172.1|2846010_2846124_+|hypothetical-protein
MKEKLLGTIIWSIATFYYSRMMEIMNLAILKIKIGGS
>NZ_CP047809.1|WP_000290485.1|2845566_2845947_+|glycine-cleavage-system-protein-GcvH
MAVPNELKYSKEHEWVKVEGNVAIIGITEYAQSELGDIVFVELPETDDEINEGDTFGSVESVKTVSELYAPISGKVVEVNEELEDSPEFVNESPYEKAWMVKVEISDESQIEALLTAEKYSEMIGE
>NZ_CP047809.1|WP_000589549.1|2845052_2845409_+|arsenate-reductase-family-protein
MIKFYQYKNCTTCKKAAKFLDEYGVSYEPIDIVQHTPTINEFKTIIANTGVEINKLFNTHGAKYRELDLKNKLQTLSDDEKLELLSSDGMLVKRPLAVMGDKITLGFKEDQYKETWLA
>NZ_CP047809.1|WP_001190695.1|2844588_2844909_-|thioredoxin-family-protein
MQSIKSNESFKSVINSDTPVIVKFEAGWCPDCRAMDLWIDPIVEQYNDYQWYTVNRDELEDVVVENEVMGIPSLLVFKNGDKIAHLHSANAKSPEQVESFLAETFK
>NZ_CP047809.1|WP_000422908.1|2843899_2844439_+|nitroreductase
MELQQAIANRRSVKKFKRDMHIDDALLYQAIEKAADAPNHGMREPWRVVHVPKDRLGDMSKDISKFAFPNELDKQQCHYDAVTKLGGMLLLILKTDPRQRQNDENYFAFGAYAQNLMLLLYEAGIGTCWKSPLYIYDPKVRKTLGIKKDEVLAGFLYLTDLEEDMPKAPRKNRNLITLY
>NZ_CP047809.1|WP_000150017.1|2843100_2843817_+|type-I-3-dehydroquinate-dehydratase
MTHVEVVATIAPQLSIEETLIQKINHRIDAIDVLELRIDQIENVTVDQVAEMITKLKVMQDSFKLLVTYRTKLQGGYGQFTNDSYLNLISDLANINGIDMIDIEWQADIDIEKHQRIITHLQQYNKEVVISHHNFESTPPLDELQFIFFKMQKFNPEYVKLAVMPHNKNDVLNLLQAMSTFSDTMDCKVVGISMSKLGLISRTAQGVFGGALTYGCIGVPQAPGQIDVTDLKAQVTLY
>NZ_CP047809.1|WP_000974460.1|2842530_2842953_-|organic-hydroperoxide-resistance-protein
MAIHYETKATNVGGRKGHVYTDDRALDIDIVPPAQADGKATNPEQLFAAGYASCFNGAFDLILKQNKVRDAHPEVTLTVRLEDDSDSESPKLSVSIDATIKNVISQEEAEKYLQMAHEFCPYSKATQGNINVDLNVNVVD
>NZ_CP047809.1|WP_000569884.1|2841637_2842132_-|GNAT-family-N-acetyltransferase
MIEIKTLTNNDFNEYKRLVSTVNEEFTQDSHYSQTMTDTLIHDILNQGSPKCIVFGCYENETLIATAALEQIRYVGKEHKSLIKYNFVTNNDKSINSELINFIINYARQNNYESLLTSIVSNNIGAKVFYSALGFDILGFEKNAIKIGNTYFDEHWLFYDLINK
>NZ_CP047809.1|WP_000255561.1|2840865_2841483_-|amino-acid-transporter
MVTAIIHGFILAIGLILPLGAQNVFIFNQGANQPKYRYVLPAIITAGLSDSLLIIIAVVGVSIIIMSLPVLQAIIYIVGLIFLMYMAWTIWHDKPSTDGETQIMSPMKQVSFALSVSLLNPHAILDTIGVIGSSAALYSGSNKIAFTIACISVSWLWFFLLAILGKMVGSIDKTGKLLTIINKISSIIIIIVALMILQKLIQLLF
>NZ_CP047809.1|WP_001018962.1|2847745_2848132_+|topiosmerase
MAIVNKVIIVEGKSDKKRVQQVIAEPVNIICTHGTMSIDKLDDMIESLYDKQVFVLADSDDEGDRIRNWFKRYLSESEHIFIDKTYCQVANCPKQYLAHVLSKHGFTCKKETPLLPNINNERLVLVNE
>NZ_CP047809.1|WP_001065801.1|2848124_2848421_+|thioredoxin-family-protein
MNNSLDIKDVTTFYEEDKHLIFGYTPTCGTCKVSERMLDIANEILQLPLLKIDLNFYPQFCKDMQIMSTPILLLMNKDKEVKRIYAFKSVTDLLENLK
>NZ_CP047809.1|WP_000571218.1|2848670_2849696_+|methionine-ABC-transporter-ATP-binding-protein
MIELKEVVKEYRTKNKEVLAVDHVNLSIRAGSIYGVIGFSGAGKSTLIRMFNHLEAPTSGEVIIDGDHIGQLSKNGLRAKRQKVSMIFQHFNLLWSRTVLKNIMFPLEIAGVPRRRAKQKALELVELVGLKGREKAYPSELSGGQKQRVGIARALANDPTVLLCDEATSALDPQTTDEILDLLLKIREQQNLTIVLITHEMHVIRRICDEVAVMESGKVIEQGPVTQVFENPQHTVTKRFVKDDLNDDFETSLTELEPLEKDAYIVRLVFAGSTTTEPIVSSLSTAYDIKINILEANIKNTKNGTVGFLVLHIPYISSVDFGKFEKELIERQVKMEVLRHG
>NZ_CP047809.1|WP_000520233.1|2849688_2850384_+|ABC-transporter-permease
MGKSFSEIINEMITMPNIQWPEVWTAIVETLYMTVVSTIFAFILGLILGVLLFLSAKGKSIGARLFYSIVSFIVNLFRAIPFIILILLLIPFTSLILGTISGPTGALPALIIGAAPFYARLVEIAFKEIDKGVIEAAWSMGANTWTVIRKVLLPEAMPALVSGITVTAIALVGSTAVAGVIGAGGLGNLAYLTGFTRNQNDVILVSTVFILIIVFIIQFIGDWLTNKLDKR
>NZ_CP047809.1|WP_000732326.1|2850401_2851223_+|MetQ/NlpA-family-ABC-transporter-substrate-binding-protein
MKKLFGLILVLTFAVVLAACGNGNKSGSDDKKITVGASPAPHAEILEKAKPLLEKKGYELDIKTINDYTTPNKLLDKGEIDANYFQHTPYLNTEKKDKGYKIVSAGDVHLEPMAVYSKKYKSLKELPKGATVYVSNNPAEQGRFLKFFVDAGLIKIKKGVKIEDAKFSDITENKKDIKFNNKQSAEFLPKIYQNEDADAVIINSNFAIEQKLNPKKDSIAVESAKDNPYANLIAVKEGHQDDKKIKALIEVLQSKDIQDFINEKYNGAVIPAK
>NZ_CP047809.1|WP_000752917.1|2851576_2851771_+|CsbD-family-protein
MADESKFEQAKGNVKETVGNVTDNKNLENEGKEDKASGKAKEFVENAKEKATDFIDKVKGNKGE
>NZ_CP047809.1|WP_001183858.1|2852003_2852855_-|DUF368-domain-containing-protein
MQQFKWINILKGFAMGTSDLVPGVSGGTIALLLGIYNQFIASISGIFSRRFWPSFTFLIPIIIGMLLAMGSLSNLFNYLLSQHHIPTMFFFGGLIIGIVPYLLKISNYKTSFTTKHYMMVIAGIAILIVITLMNNGDKHAGETLTLSTSLIIKYFIAGMCASSAMLLPGISGSFMLLVFGVYGTVMLAISEVVKLNFAGLPILLAVGFGVLAGFIISSKIIQYFLTHHKLMTFALIIGFVVGSLFAVFPGLPTNIVMWFVSLVVFIIGFIVSLTLGRITAENE
>NZ_CP047809.1|WP_000168845.1|2853182_2853944_+|Fe-S-cluster-assembly-ATPase-SufC
MASTLEIKDLHVSIEDKEILKGVNLTINTDEIHAIMGPNGTGKSTLSSAIMGHPSYEVTKGEVLLDGVNILELEVDERAKAGLFLAMQYPSEITGVTNADFMRSAINAKREEGQEINLMQFIKKLDKNMDFLDIDKDMAQRYLNEGFSGGEKKRNEILQLMMLEPKFAILDEIDSGLDIDALKVVSKGINQMRGENFGALMITHYQRLLNYITPDKVHVMYAGKVVKSGGPELAKRLEEEGYEWVKEEFGSAE
>NZ_CP047809.1|WP_161575771.1|2854041_2855349_+|Fe-S-cluster-assembly-protein-SufD
MTTDILNISEEQLVDYSKAHNEPSWMTELRKKALKLTETLEMPKPDKTKLRKWDFDSFKQHDVKGDVYQSLSQLPELVREIIDVDHSKNLVIQHNNTIAYTQVDDNASKDGVIVEGLADALMNHSDLVQKYFMKDAVTVDEHRITALHTALVNGGVFVYVPKNVVVEHPVQYVVLHDDENASFYNHVIIVTEESAEVTYVENYLSNASGEGNQLNIISEVIAGANSNITYGSVDYMDKGFTGHIIRRGITEADASINWALGLMNEGSQIIDNTTNLFGDRSTSSLKSVVVGTGEQKINLTSKIVQYGKETDGYILKHGVMKEHASSVFNGIGYIKHGGTKSIANQESRVLMLSEHARGDANPILLIDEDDVQAGHAASVGRVDPDQLYYLMSRGISQREAERLVIHGFLDPVVRELPIEDVKRQLREVIERKVSK
>NZ_CP047809.1|WP_001006454.1|2855454_2856705_+|cysteine-desulfurase
MNEVAEHSFDVNEVIKDFPILDQKVNGKRLAYLDSTATSQTPVQVLNVLEDYYKRYNSNVHRGVHTLGSLATDGYENARETVRRFINAKYFEEIIFTRGTTASINLVAHSYGDANVEEGDEIVVTEMEHHANIVPWQQLAKRKNATLKFIPMTADGELNIEDIKQTINDKTKIVAIAHISNVLGTINDVKTIAEIAHQHGAIISVDGAQAAPHMKLDMQEMNADFYSFSGHKMLGPTGIGVLFGKRELLQKMEPIEFGGDMIDFVSKYDATWADLPTKFEAGTPLIAQAIGLAEAIRYLERIGFDAIHKYEQELTIYAYEQMSAIEGIEIYGPPKDRRAGVITFNLQDVHPHDVATAVDTEGVAVRAGHHCAQPLMKWLNVSSTARASFYIYNTKEDVDQLINALKQTKEFFSYEF

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NZ_CP047809_2	2.2\|293653\|37\|NZ_CP047809\|CRT	293653-293689	37	NZ_CP047809.1	193326-193362	0	1.0
NZ_CP047809_2	2.2\|293653\|37\|NZ_CP047809\|CRT	293653-293689	37	NZ_CP047809.1	501865-501901	0	1.0
NZ_CP047809_2	2.2\|293653\|37\|NZ_CP047809\|CRT	293653-293689	37	NZ_CP047809.1	1120603-1120639	0	1.0
NZ_CP047809_2	2.3\|293709\|37\|NZ_CP047809\|CRT	293709-293745	37	NZ_CP047809.1	501923-501959	0	1.0
NZ_CP047809_2	2.3\|293709\|37\|NZ_CP047809\|CRT	293709-293745	37	NZ_CP047809.1	2066939-2066975	0	1.0
NZ_CP047809_2	2.3\|293709\|37\|NZ_CP047809\|CRT	293709-293745	37	NZ_CP047809.1	2625526-2625562	0	1.0
NZ_CP047809_2	2.3\|293709\|37\|NZ_CP047809\|CRT	293709-293745	37	NZ_CP047809.1	2742350-2742386	0	1.0
NZ_CP047809_2	2.3\|293709\|37\|NZ_CP047809\|CRT	293709-293745	37	NZ_CP047809.1	590271-590307	0	1.0
NZ_CP047809_2	2.3\|293709\|37\|NZ_CP047809\|CRT	293709-293745	37	NZ_CP047809.1	1122060-1122096	0	1.0
NZ_CP047809_2	2.3\|293709\|37\|NZ_CP047809\|CRT	293709-293745	37	NZ_CP047809.1	2741380-2741416	0	1.0
NZ_CP047809_2	2.3\|293709\|37\|NZ_CP047809\|CRT	293709-293745	37	NZ_CP047809.1	2788872-2788908	0	1.0
NZ_CP047809_9	9.1\|2783442\|29\|NZ_CP047809\|CRISPRCasFinder	2783442-2783470	29	NZ_CP047809.1	1893198-1893226	0	1.0
NZ_CP047809_10	10.1\|2847132\|34\|NZ_CP047809\|CRISPRCasFinder	2847132-2847165	34	NZ_CP047809.1	501906-501939	0	1.0
NZ_CP047809_1	1.1\|62620\|26\|NZ_CP047809\|CRT	62620-62645	26	NZ_CP047809.1	2788844-2788869	1	0.962
NZ_CP047809_1	1.1\|62620\|26\|NZ_CP047809\|CRT	62620-62645	26	NZ_CP047809.1	62564-62589	1	0.962
NZ_CP047809_1	1.3\|62734\|26\|NZ_CP047809\|CRT	62734-62759	26	NZ_CP047809.1	1120631-1120656	1	0.962
NZ_CP047809_2	2.1\|293597\|37\|NZ_CP047809\|CRT	293597-293633	37	NZ_CP047809.1	948731-948767	1	0.973
NZ_CP047809_2	2.2\|293653\|37\|NZ_CP047809\|CRT	293653-293689	37	NZ_CP047809.1	590329-590365	1	0.973
NZ_CP047809_2	2.2\|293653\|37\|NZ_CP047809\|CRT	293653-293689	37	NZ_CP047809.1	770073-770109	1	0.973
NZ_CP047809_2	2.2\|293653\|37\|NZ_CP047809\|CRT	293653-293689	37	NZ_CP047809.1	1728118-1728154	1	0.973
NZ_CP047809_2	2.3\|293709\|37\|NZ_CP047809\|CRT	293709-293745	37	NZ_CP047809.1	219227-219263	1	0.973
NZ_CP047809_2	2.3\|293709\|37\|NZ_CP047809\|CRT	293709-293745	37	NZ_CP047809.1	1618813-1618849	1	0.973
NZ_CP047809_9	9.1\|2783442\|29\|NZ_CP047809\|CRISPRCasFinder	2783442-2783470	29	NZ_CP047809.1	948734-948762	1	0.966
NZ_CP047809_9	9.1\|2783442\|29\|NZ_CP047809\|CRISPRCasFinder	2783442-2783470	29	NZ_CP047809.1	2334827-2334855	1	0.966
NZ_CP047809_10	10.1\|2847132\|34\|NZ_CP047809\|CRISPRCasFinder	2847132-2847165	34	NZ_CP047809.1	590291-590324	1	0.971
NZ_CP047809_1	1.1\|62620\|26\|NZ_CP047809\|CRT	62620-62645	26	NZ_CP047809.1	1893166-1893191	2	0.923
NZ_CP047809_1	1.1\|62620\|26\|NZ_CP047809\|CRT	62620-62645	26	NZ_CP047809.1	293748-293773	2	0.923
NZ_CP047809_1	1.1\|62620\|26\|NZ_CP047809\|CRT	62620-62645	26	NZ_CP047809.1	2751836-2751861	2	0.923
NZ_CP047809_2	2.1\|293597\|37\|NZ_CP047809\|CRT	293597-293633	37	NZ_CP047809.1	1644097-1644133	2	0.946
NZ_CP047809_2	2.1\|293597\|37\|NZ_CP047809\|CRT	293597-293633	37	NZ_CP047809.1	770015-770051	2	0.946
NZ_CP047809_2	2.1\|293597\|37\|NZ_CP047809\|CRT	293597-293633	37	NZ_CP047809.1	1131350-1131386	2	0.946
NZ_CP047809_2	2.1\|293597\|37\|NZ_CP047809\|CRT	293597-293633	37	NZ_CP047809.1	1893193-1893229	2	0.946
NZ_CP047809_2	2.1\|293597\|37\|NZ_CP047809\|CRT	293597-293633	37	NZ_CP047809.1	2847169-2847205	2	0.946
NZ_CP047809_2	2.2\|293653\|37\|NZ_CP047809\|CRT	293653-293689	37	NZ_CP047809.1	289685-289721	2	0.946
NZ_CP047809_2	2.2\|293653\|37\|NZ_CP047809\|CRT	293653-293689	37	NZ_CP047809.1	293765-293801	2	0.946
NZ_CP047809_2	2.2\|293653\|37\|NZ_CP047809\|CRT	293653-293689	37	NZ_CP047809.1	1120544-1120580	2	0.946
NZ_CP047809_2	2.2\|293653\|37\|NZ_CP047809\|CRT	293653-293689	37	NZ_CP047809.1	2788816-2788852	2	0.946
NZ_CP047809_2	2.3\|293709\|37\|NZ_CP047809\|CRT	293709-293745	37	NZ_CP047809.1	289741-289777	2	0.946
NZ_CP047809_9	9.1\|2783442\|29\|NZ_CP047809\|CRISPRCasFinder	2783442-2783470	29	NZ_CP047809.1	82259-82287	2	0.931
NZ_CP047809_9	9.1\|2783442\|29\|NZ_CP047809\|CRISPRCasFinder	2783442-2783470	29	NZ_CP047809.1	770020-770048	2	0.931
NZ_CP047809_9	9.1\|2783442\|29\|NZ_CP047809\|CRISPRCasFinder	2783442-2783470	29	NZ_CP047809.1	1131355-1131383	2	0.931
NZ_CP047809_9	9.1\|2783442\|29\|NZ_CP047809\|CRISPRCasFinder	2783442-2783470	29	NZ_CP047809.1	2847174-2847202	2	0.931
NZ_CP047809_9	9.1\|2783442\|29\|NZ_CP047809\|CRISPRCasFinder	2783442-2783470	29	NZ_CP047809.1	1644100-1644128	2	0.931

1. spacer 2.2|293653|37|NZ_CP047809|CRT matches to position: 193326-193362, mismatch: 0, identity: 1.0

agctgacgaaaagtcagcttacaataatgtgcaagtt	CRISPR spacer
agctgacgaaaagtcagcttacaataatgtgcaagtt	Protospacer
*************************************

2. spacer 2.2|293653|37|NZ_CP047809|CRT matches to position: 501865-501901, mismatch: 0, identity: 1.0

agctgacgaaaagtcagcttacaataatgtgcaagtt	CRISPR spacer
agctgacgaaaagtcagcttacaataatgtgcaagtt	Protospacer
*************************************

3. spacer 2.2|293653|37|NZ_CP047809|CRT matches to position: 1120603-1120639, mismatch: 0, identity: 1.0

agctgacgaaaagtcagcttacaataatgtgcaagtt	CRISPR spacer
agctgacgaaaagtcagcttacaataatgtgcaagtt	Protospacer
*************************************

4. spacer 2.3|293709|37|NZ_CP047809|CRT matches to position: 501923-501959, mismatch: 0, identity: 1.0

gaaattggattcccaatttctacagacaatgcaagtt	CRISPR spacer
gaaattggattcccaatttctacagacaatgcaagtt	Protospacer
*************************************

5. spacer 2.3|293709|37|NZ_CP047809|CRT matches to position: 2066939-2066975, mismatch: 0, identity: 1.0

gaaattggattcccaatttctacagacaatgcaagtt	CRISPR spacer
gaaattggattcccaatttctacagacaatgcaagtt	Protospacer
*************************************

6. spacer 2.3|293709|37|NZ_CP047809|CRT matches to position: 2625526-2625562, mismatch: 0, identity: 1.0

gaaattggattcccaatttctacagacaatgcaagtt	CRISPR spacer
gaaattggattcccaatttctacagacaatgcaagtt	Protospacer
*************************************

7. spacer 2.3|293709|37|NZ_CP047809|CRT matches to position: 2742350-2742386, mismatch: 0, identity: 1.0

gaaattggattcccaatttctacagacaatgcaagtt	CRISPR spacer
gaaattggattcccaatttctacagacaatgcaagtt	Protospacer
*************************************

8. spacer 2.3|293709|37|NZ_CP047809|CRT matches to position: 590271-590307, mismatch: 0, identity: 1.0

gaaattggattcccaatttctacagacaatgcaagtt	CRISPR spacer
gaaattggattcccaatttctacagacaatgcaagtt	Protospacer
*************************************

9. spacer 2.3|293709|37|NZ_CP047809|CRT matches to position: 1122060-1122096, mismatch: 0, identity: 1.0

gaaattggattcccaatttctacagacaatgcaagtt	CRISPR spacer
gaaattggattcccaatttctacagacaatgcaagtt	Protospacer
*************************************

10. spacer 2.3|293709|37|NZ_CP047809|CRT matches to position: 2741380-2741416, mismatch: 0, identity: 1.0

gaaattggattcccaatttctacagacaatgcaagtt	CRISPR spacer
gaaattggattcccaatttctacagacaatgcaagtt	Protospacer
*************************************

11. spacer 2.3|293709|37|NZ_CP047809|CRT matches to position: 2788872-2788908, mismatch: 0, identity: 1.0

gaaattggattcccaatttctacagacaatgcaagtt	CRISPR spacer
gaaattggattcccaatttctacagacaatgcaagtt	Protospacer
*************************************

12. spacer 9.1|2783442|29|NZ_CP047809|CRISPRCasFinder matches to position: 1893198-1893226, mismatch: 0, identity: 1.0

tgcattgtttgtagaatttcttttcgaaa	CRISPR spacer
tgcattgtttgtagaatttcttttcgaaa	Protospacer
*****************************

13. spacer 10.1|2847132|34|NZ_CP047809|CRISPRCasFinder matches to position: 501906-501939, mismatch: 0, identity: 1.0

attgggaatccaatttctctttgttggggcccat	CRISPR spacer
attgggaatccaatttctctttgttggggcccat	Protospacer
**********************************

14. spacer 1.1|62620|26|NZ_CP047809|CRT matches to position: 2788844-2788869, mismatch: 1, identity: 0.962

cggggccccaacacagaggctggcgg	CRISPR spacer
cggggccccaacacagaagctggcgg	Protospacer
*****************.********

15. spacer 1.1|62620|26|NZ_CP047809|CRT matches to position: 62564-62589, mismatch: 1, identity: 0.962

cggggccccaacacagaggctggcgg	CRISPR spacer
cggggccccaacacagaggctggtgg	Protospacer
***********************.**

16. spacer 1.3|62734|26|NZ_CP047809|CRT matches to position: 1120631-1120656, mismatch: 1, identity: 0.962

cggggccccaacacagaagctggcga	CRISPR spacer
cggggccccaacacagaagctgacga	Protospacer
**********************.***

17. spacer 2.1|293597|37|NZ_CP047809|CRT matches to position: 948731-948767, mismatch: 1, identity: 0.973

gaatttcaaaaagaaattctacagacaatgcaagttg	CRISPR spacer
gaatttcgaaaagaaattctacagacaatgcaagttg	Protospacer
*******.*****************************

18. spacer 2.2|293653|37|NZ_CP047809|CRT matches to position: 590329-590365, mismatch: 1, identity: 0.973

agctgacgaaaagtcagcttacaataatgtgcaagtt	CRISPR spacer
agatgacgaaaagtcagcttacaataatgtgcaagtt	Protospacer
** **********************************

19. spacer 2.2|293653|37|NZ_CP047809|CRT matches to position: 770073-770109, mismatch: 1, identity: 0.973

agctgacgaaaagtcagcttacaataatgtgcaagtt	CRISPR spacer
agctgacgaaaagtcagcttactataatgtgcaagtt	Protospacer
********************** **************

20. spacer 2.2|293653|37|NZ_CP047809|CRT matches to position: 1728118-1728154, mismatch: 1, identity: 0.973

agctgacgaaaagtcagcttacaataatgtgcaagtt	CRISPR spacer
agctgacgaaaagtcagcttacaataatgtgcgagtt	Protospacer
********************************.****

21. spacer 2.3|293709|37|NZ_CP047809|CRT matches to position: 219227-219263, mismatch: 1, identity: 0.973

gaaattggattcccaatttctacagacaatgcaagtt	CRISPR spacer
gaaattggattcccaatttctacagacaatgtaagtt	Protospacer
*******************************.*****

22. spacer 2.3|293709|37|NZ_CP047809|CRT matches to position: 1618813-1618849, mismatch: 1, identity: 0.973

gaaattggattcccaatttctacagacaatgcaagtt	CRISPR spacer
gaaattggattcccaatttctagagacaatgcaagtt	Protospacer
********************** **************

23. spacer 9.1|2783442|29|NZ_CP047809|CRISPRCasFinder matches to position: 948734-948762, mismatch: 1, identity: 0.966

tgcattgtttgtagaatttcttttcgaaa	CRISPR spacer
tgcattgtctgtagaatttcttttcgaaa	Protospacer
********.********************

24. spacer 9.1|2783442|29|NZ_CP047809|CRISPRCasFinder matches to position: 2334827-2334855, mismatch: 1, identity: 0.966

tgcattgtttgtagaatttcttttcgaaa	CRISPR spacer
tgcattgcttgtagaatttcttttcgaaa	Protospacer
*******.*********************

25. spacer 10.1|2847132|34|NZ_CP047809|CRISPRCasFinder matches to position: 590291-590324, mismatch: 1, identity: 0.971

attgggaatccaatttctctttgttggggcccat	CRISPR spacer
attgggaatccaatttctctttgttgaggcccat	Protospacer
**************************.*******

26. spacer 1.1|62620|26|NZ_CP047809|CRT matches to position: 1893166-1893191, mismatch: 2, identity: 0.923

cggggccccaacacagaggctggcgg	CRISPR spacer
cggggccccaacaaagaagctggcgg	Protospacer
************* ***.********

27. spacer 1.1|62620|26|NZ_CP047809|CRT matches to position: 293748-293773, mismatch: 2, identity: 0.923

cggggccccaacacagaggctggcgg	CRISPR spacer
cggggccccaacatagaagctggcgg	Protospacer
*************.***.********

28. spacer 1.1|62620|26|NZ_CP047809|CRT matches to position: 2751836-2751861, mismatch: 2, identity: 0.923

cggggccccaacacagaggctggcgg	CRISPR spacer
cggggccccaacacagaagcaggcgg	Protospacer
*****************.** *****

29. spacer 2.1|293597|37|NZ_CP047809|CRT matches to position: 1644097-1644133, mismatch: 2, identity: 0.946

gaatttcaaaaagaaattctacagacaatgcaagttg	CRISPR spacer
gaatttcgaaaagaaattctacaggcaatgcaagttg	Protospacer
*******.****************.************

30. spacer 2.1|293597|37|NZ_CP047809|CRT matches to position: 770015-770051, mismatch: 2, identity: 0.946

gaatttcaaaaagaaattctacagacaatgcaagttg	CRISPR spacer
gaatttcgaaaagaaattctacaggcaatgcaagttg	Protospacer
*******.****************.************

31. spacer 2.1|293597|37|NZ_CP047809|CRT matches to position: 1131350-1131386, mismatch: 2, identity: 0.946

gaatttcaaaaagaaattctacagacaatgcaagttg	CRISPR spacer
gaatttcgaaaggaaattctacagacaatgcaagttg	Protospacer
*******.***.*************************

32. spacer 2.1|293597|37|NZ_CP047809|CRT matches to position: 1893193-1893229, mismatch: 2, identity: 0.946

gaatttcaaaaagaaattctacagacaatgcaagttg	CRISPR spacer
gaatttcgaaaagaaattctacaaacaatgcaagttg	Protospacer
*******.***************.*************

33. spacer 2.1|293597|37|NZ_CP047809|CRT matches to position: 2847169-2847205, mismatch: 2, identity: 0.946

gaatttcaaaaagaaattctacagacaatgcaagttg	CRISPR spacer
gaatttcgaaaagaaattctacaggcaatgcaagttg	Protospacer
*******.****************.************

34. spacer 2.2|293653|37|NZ_CP047809|CRT matches to position: 289685-289721, mismatch: 2, identity: 0.946

agctgacgaaaagtcagcttacaataatgtgcaagtt	CRISPR spacer
agctggcgaaaagtcagcttacaaaaatgtgcaagtt	Protospacer
*****.****************** ************

35. spacer 2.2|293653|37|NZ_CP047809|CRT matches to position: 293765-293801, mismatch: 2, identity: 0.946

agctgacgaaaagtcagcttacaataatgtgcaagtt	CRISPR spacer
agctggcggaaagtcagcttacaataatgtgcaagtt	Protospacer
*****.**.****************************

36. spacer 2.2|293653|37|NZ_CP047809|CRT matches to position: 1120544-1120580, mismatch: 2, identity: 0.946

agctgacgaaaagtcagcttacaataatgtgcaagtt	CRISPR spacer
agctgacgaaaagtcagcttacgataatgtgcaggtt	Protospacer
**********************.**********.***

37. spacer 2.2|293653|37|NZ_CP047809|CRT matches to position: 2788816-2788852, mismatch: 2, identity: 0.946

agctgacgaaaagtcagcttacaataatgtgcaagtt	CRISPR spacer
agctggcggaaagtcagcttacaataatgtgcaagtt	Protospacer
*****.**.****************************

38. spacer 2.3|293709|37|NZ_CP047809|CRT matches to position: 289741-289777, mismatch: 2, identity: 0.946

gaaattggattcccaatttctacagacaatgcaagtt	CRISPR spacer
gaaattggaaccccaatttctacagacaatgcaagtt	Protospacer
********* .**************************

39. spacer 9.1|2783442|29|NZ_CP047809|CRISPRCasFinder matches to position: 82259-82287, mismatch: 2, identity: 0.931

tgcattgtttgtagaatttcttttcgaaa	CRISPR spacer
tgcattgcctgtagaatttcttttcgaaa	Protospacer
*******..********************

40. spacer 9.1|2783442|29|NZ_CP047809|CRISPRCasFinder matches to position: 770020-770048, mismatch: 2, identity: 0.931

tgcattgtttgtagaatttcttttcgaaa	CRISPR spacer
tgcattgcctgtagaatttcttttcgaaa	Protospacer
*******..********************

41. spacer 9.1|2783442|29|NZ_CP047809|CRISPRCasFinder matches to position: 1131355-1131383, mismatch: 2, identity: 0.931

tgcattgtttgtagaatttcttttcgaaa	CRISPR spacer
tgcattgtctgtagaatttcctttcgaaa	Protospacer
********.***********.********

42. spacer 9.1|2783442|29|NZ_CP047809|CRISPRCasFinder matches to position: 2847174-2847202, mismatch: 2, identity: 0.931

tgcattgtttgtagaatttcttttcgaaa	CRISPR spacer
tgcattgcctgtagaatttcttttcgaaa	Protospacer
*******..********************

43. spacer 9.1|2783442|29|NZ_CP047809|CRISPRCasFinder matches to position: 1644100-1644128, mismatch: 2, identity: 0.931

tgcattgtttgtagaatttcttttcgaaa	CRISPR spacer
tgcattgcctgtagaatttcttttcgaaa	Protospacer
*******..********************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP047809_1	1.4\|62790\|53\|NZ_CP047809\|CRT	62790-62842	53	MG543995	Staphylococcus phage UPMK_1, partial genome	76246-76298	4	0.925
NZ_CP047809_1	1.3\|62734\|26\|NZ_CP047809\|CRT	62734-62759	26	NZ_CP022541	Antarctobacter heliothermus strain SMS3 plasmid pSMS3-1, complete sequence	333735-333760	5	0.808
NZ_CP047809_9	9.1\|2783442\|29\|NZ_CP047809\|CRISPRCasFinder	2783442-2783470	29	MN693281	Marine virus AFVG_25M371, complete genome	6448-6476	7	0.759

1. spacer 1.4|62790|53|NZ_CP047809|CRT matches to MG543995 (Staphylococcus phage UPMK_1, partial genome) position: , mismatch: 4, identity: 0.925

ggtgggacgacgaaataaattttgcgaaaatatcatttctgtcccactcccaa	CRISPR spacer
ggtgggacgacgaaataaattttgagaaactatcatttctgtcccactccctt	Protospacer
************************ **** *********************

2. spacer 1.3|62734|26|NZ_CP047809|CRT matches to NZ_CP022541 (Antarctobacter heliothermus strain SMS3 plasmid pSMS3-1, complete sequence) position: , mismatch: 5, identity: 0.808

cggggccccaacacagaagctggcga	CRISPR spacer
taaggcctcaacacagaagctggcgt	Protospacer
...****.*****************

3. spacer 9.1|2783442|29|NZ_CP047809|CRISPRCasFinder matches to MN693281 (Marine virus AFVG_25M371, complete genome) position: , mismatch: 7, identity: 0.759

tgcattgtttgtagaatttcttttcgaaa	CRISPR spacer
tgcattgtttgtaggatttcttctaagtg	Protospacer
**************.*******.* .. .

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

0 : 25045

Staphylococcus_phage(100.0%)

terminase,tail,capsid,portal,protease,head,holin

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000625088.1\|0_1662_+\|terminase	terminase large subunit	A0A2I6PDJ8	Staphylococcus_phage	0.0e+00	100.0
WP_000025274.1\|1677_2865_+\|portal	phage portal protein	A0A2I6PDI1	Staphylococcus_phage	1.0e-219	100.0
WP_161575632.1\|2848_3586_+\|protease	Clp protease ClpP	C8CH20	Staphylococcus_phage	1.5e-128	99.6
WP_000154555.1\|3609_4755_+\|capsid	phage major capsid protein	A0A1X9H072	Staphylococcus_phage	5.6e-215	100.0
WP_000238237.1\|4774_5035_+	hypothetical protein	A0A0H3U504	Staphylococcus_phage	6.4e-42	100.0
WP_000150936.1\|5047_5332_+\|head,tail	phage head-tail adapter protein	A0A2I6PDJ5	Staphylococcus_phage	2.3e-45	100.0
WP_000755150.1\|5315_5678_+\|head,tail	head-tail adaptor protein	G4KNQ4	Staphylococcus_phage	4.4e-65	100.0
WP_000114225.1\|5674_6079_+	hypothetical protein	A0A2I6PDJ6	Staphylococcus_phage	4.3e-69	100.0
WP_000565498.1\|6075_6483_+	hypothetical protein	G4KNQ6	Staphylococcus_phage	7.1e-72	100.0
WP_000268741.1\|6483_7128_+\|tail	phage tail protein	W5R9H4	Staphylococcus_phage	6.5e-120	100.0
WP_072050172.1\|7169_7394_+	hypothetical protein	A0A075LYE8	Staphylococcus_phage	8.8e-32	98.6
WP_001096355.1\|7443_7794_+	hypothetical protein	G4KNQ8	Staphylococcus_phage	7.8e-59	100.0
WP_161575633.1\|8038_12568_+\|tail	phage tail tape measure protein	A0A1X9H084	Staphylococcus_phage	0.0e+00	99.9
WP_057520789.1\|12564_14049_+\|tail	phage tail protein	A0A2I6PDJ0	Staphylococcus_phage	1.5e-297	99.8
WP_050956529.1\|14064_17847_+	hypothetical protein	A0A1X9H096	Staphylococcus_phage	0.0e+00	99.9
WP_001000058.1\|17839_17992_+	hypothetical protein	A0A1W6JPL6	Staphylococcus_phage	7.6e-19	100.0
WP_001262621.1\|18037_18325_+	hypothetical protein	A0A1X9H0N7	Staphylococcus_phage	7.6e-44	100.0
WP_000340977.1\|18380_18755_+	hypothetical protein	G4KNR3	Staphylococcus_phage	3.3e-39	100.0
WP_000750412.1\|19127_19901_+	staphylococcal enterotoxin type A	A0A1X9H080	Staphylococcus_phage	1.1e-145	100.0
WP_011447039.1\|20009_20186_+\|holin	putative holin-like toxin	D2JLG3	Staphylococcus_phage	2.2e-22	98.3
WP_031762631.1\|20238_20346_-	hypothetical protein	NA	NA	NA	NA
WP_000611512.1\|20397_20652_+\|holin	phage holin	D2JLG4	Staphylococcus_phage	4.1e-41	100.0
WP_000861038.1\|20663_21419_+	CHAP domain-containing protein	D2JLG5	Staphylococcus_phage	3.4e-152	100.0
WP_000920038.1\|21609_22101_+	staphylokinase	A0A1W6JQ12	Staphylococcus_phage	4.7e-86	99.4
WP_117225185.1\|22628_23087_+	amidase	R9QTN8	Staphylococcus_phage	3.5e-83	96.7
WP_001788502.1\|23331_23484_+	hypothetical protein	A0A0F6N3H2	Staphylococcus_phage	3.1e-20	100.0
WP_000139423.1\|23554_23665_+	hypothetical protein	W5R8J7	Staphylococcus_phage	1.7e-12	100.0
WP_000382163.1\|23651_23852_+	hypothetical protein	W5R9N2	Staphylococcus_phage	3.7e-29	100.0
WP_000528632.1\|24487_25045_+	hypothetical protein	W5R8Q1	Staphylococcus_phage	5.7e-104	100.0

DBSCAN-SWA_2

36452 : 39121

Tupanvirus(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000129653.1\|36452_37910_+	D-alanine--poly(phosphoribitol) ligase subunit DltA	A0A2K9L3I8	Tupanvirus	4.4e-39	28.3
WP_000613541.1\|37906_39121_+	PG:teichoic acid D-alanyltransferase DltB	A0A125RNP0	Pseudomonas_phage	8.5e-20	26.1

DBSCAN-SWA_3

43164 : 46792

Lake_Baikal_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001143497.1\|43164_43524_+	iron-sulfur cluster assembly accessory protein	A0A2H4N7M3	Lake_Baikal_phage	2.1e-14	38.6
WP_000046076.1\|43977_45186_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA
WP_001009697.1\|45316_46792_+	cytosol aminopeptidase	Q6GYZ8	Mycoplasma_phage	6.9e-48	34.9

DBSCAN-SWA_4

56712 : 63871

Aureococcus_anophage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000035058.1\|56712_57306_+	peptidyl-prolyl cis-trans isomerase	A0A076FI46	Aureococcus_anophage	1.1e-25	41.3
WP_001067294.1\|57721_58099_+	S1 RNA-binding domain-containing protein	NA	NA	NA	NA
WP_161575636.1\|58460_59588_+	NADH-dependent flavin oxidoreductase	NA	NA	NA	NA
WP_000167314.1\|59895_61086_+	ornithine--oxo-acid transaminase	A0A1V0SKB7	Klosneuvirus	1.3e-33	29.7
WP_000138487.1\|61194_62439_+	Glu/Leu/Phe/Val dehydrogenase	NA	NA	NA	NA
WP_000185319.1\|62941_63871_-	glycerophosphodiester phosphodiesterase	A0A220BYK6	Staphylococcus_phage	3.7e-39	37.9

DBSCAN-SWA_5

74025 : 77679

Bacillus_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000154930.1\|74025_77679_+	helicase-exonuclease AddAB subunit AddA	A7KV33	Bacillus_phage	3.5e-24	24.5

DBSCAN-SWA_6

82796 : 89606

Pseudomonas_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001044214.1\|82796_84611_+	acetyltransferase	B5WZU0	Pseudomonas_phage	1.1e-36	33.9
WP_000353955.1\|84813_87423_+	ATP-dependent chaperone ClpB	A0A223W0B1	Agrobacterium_phage	5.5e-117	34.3
WP_001047066.1\|87481_88351_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_000619365.1\|88460_89606_+	2-isopropylmalate synthase	E5EQ69	Micromonas_sp._RCC1109_virus	2.5e-05	26.0

DBSCAN-SWA_7

98201 : 100215

Planktothrix_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000140050.1\|98201_99284_+	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	8.4e-19	28.8
WP_000786734.1\|99273_100215_+	ATP-binding cassette domain-containing protein	F2Y1V6	Organic_Lake_phycodnavirus	1.6e-05	26.9

DBSCAN-SWA_8

103866 : 104853

Bacillus_virus(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001067038.1\|103866_104853_+	ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	1.0e-15	30.4

DBSCAN-SWA_9

111964 : 161775

Streptococcus_phage(37.5%)

tRNA,protease,bacteriocin,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001251201.1\|111964_113323_+	cell division protein FtsK	A0A1S5SFB5	Streptococcus_phage	8.9e-42	29.9
WP_000681144.1\|113327_115175_+	membrane protein	NA	NA	NA	NA
WP_001624771.1\|115164_116211_+	CHAP domain-containing protein	A0A1X9I9L1	Staphylococcus_phage	4.8e-19	36.9
WP_000810443.1\|116217_116808_+	hypothetical protein	NA	NA	NA	NA
WP_001255377.1\|116863_117205_+	cystatin-like fold lipoprotein	NA	NA	NA	NA
WP_000746372.1\|117313_117817_+\|transposase	transposase	NA	NA	NA	NA
WP_078056058.1\|117797_118334_+\|transposase	IS30 family transposase	Q9MBM9	Staphylococcus_prophage	9.9e-29	43.6
WP_000593417.1\|119170_120133_+	ABC transporter permease	NA	NA	NA	NA
WP_001180262.1\|120144_121026_+	ABC transporter permease	NA	NA	NA	NA
WP_000448934.1\|121067_122057_-\|tRNA	tryptophan--tRNA ligase	NA	NA	NA	NA
WP_000258003.1\|122351_122747_+	transcriptional regulator Spx	NA	NA	NA	NA
WP_001217730.1\|123117_123837_+	adaptor protein MecA	NA	NA	NA	NA
WP_000959287.1\|123957_124944_+	competence protein CoiA	NA	NA	NA	NA
WP_161575638.1\|124991_126800_+	oligoendopeptidase F	A0A1X9I5X5	Streptococcus_phage	9.3e-47	24.4
WP_000896697.1\|127259_128066_-	DsbA family protein	NA	NA	NA	NA
WP_000214065.1\|128088_128454_-	hypothetical protein	NA	NA	NA	NA
WP_000224622.1\|128557_129151_-	CYTH domain-containing protein	NA	NA	NA	NA
WP_161575639.1\|129336_129684_+	hypothetical protein	NA	NA	NA	NA
WP_001077683.1\|129700_130336_+	GTP pyrophosphokinase family protein	NA	NA	NA	NA
WP_001270834.1\|130352_131162_+	NAD kinase	NA	NA	NA	NA
WP_000669939.1\|131158_132013_+	RluA family pseudouridine synthase	NA	NA	NA	NA
WP_000062417.1\|132033_133419_+	magnesium transporter	NA	NA	NA	NA
WP_000395153.1\|133428_135273_+	sodium:proton antiporter	NA	NA	NA	NA
WP_000933195.1\|135550_136321_+	enoyl-ACP reductase FabI	NA	NA	NA	NA
WP_050956416.1\|136515_137601_-	AI-2E family transporter	NA	NA	NA	NA
WP_000570692.1\|137942_139511_+	alanine:cation symporter family protein	NA	NA	NA	NA
WP_001288681.1\|139652_140411_+	esterase family protein	NA	NA	NA	NA
WP_000600392.1\|140604_141114_+	hypothetical protein	NA	NA	NA	NA
WP_161575640.1\|141226_142435_-	MFS transporter	NA	NA	NA	NA
WP_000258650.1\|142394_143570_-	diglucosyl diacylglycerol synthase	NA	NA	NA	NA
WP_000340118.1\|144002_145484_+	UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L- lysine ligase	NA	NA	NA	NA
WP_001795833.1\|145467_145728_+	hypothetical protein	NA	NA	NA	NA
WP_001049959.1\|145727_147290_+	peptide chain release factor 3	A0A1S5SF82	Streptococcus_phage	4.9e-36	28.2
WP_000928413.1\|147591_148395_+	TerC family protein	S5MAL1	Bacillus_phage	1.6e-30	40.5
WP_001805132.1\|148613_150938_+\|protease	serine protease	W5SAB9	Pithovirus	8.1e-11	27.1
WP_000021864.1\|150954_152313_+	TrkH family potassium uptake protein	NA	NA	NA	NA
WP_000414177.1\|152451_153963_+	bifunctional metallophosphatase/5'-nucleotidase	NA	NA	NA	NA
WP_000287265.1\|154449_155019_-	competence protein ComK	NA	NA	NA	NA
WP_000876826.1\|155228_155447_+	IDEAL domain-containing protein	NA	NA	NA	NA
WP_000668820.1\|155527_156514_-	lipoate--protein ligase	NA	NA	NA	NA
WP_000214898.1\|156712_156889_+	YkvS family protein	NA	NA	NA	NA
WP_001033867.1\|156903_157506_+\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA
WP_001790623.1\|158422_158524_+	hypothetical protein	NA	NA	NA	NA
WP_001790097.1\|158533_158806_+\|bacteriocin	lactococcin 972 family bacteriocin	NA	NA	NA	NA
WP_161575641.1\|158849_160814_+\|bacteriocin	bacteriocin-associated integral membrane family protein	NA	NA	NA	NA
WP_000668623.1\|160816_161137_+	YxeA family protein	NA	NA	NA	NA
WP_000571178.1\|161133_161775_+	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	2.2e-19	33.7

DBSCAN-SWA_10

166337 : 166628

Enterococcus_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_078103409.1\|166337_166628_-	TM2 domain-containing protein	A0A060AN66	Enterococcus_phage	7.5e-07	38.0

DBSCAN-SWA_11

174933 : 175944

Staphylococcus_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000676548.1\|174933_175944_-	Glu-specific serine endopeptidase SspA	A0A2H4PQP7	Staphylococcus_phage	6.2e-16	32.3

DBSCAN-SWA_12

179610 : 183381

Staphylococcus_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002871047.1\|179610_183381_-	bifunctional autolysin	A0A1J0MFB0	Staphylococcus_phage	1.9e-54	37.6

DBSCAN-SWA_13

193482 : 208242

Synechococcus_phage(22.22%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000225837.1\|193482_194343_-	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	A0A249XZQ2	Enterococcus_phage	5.3e-40	39.2
WP_000861572.1\|194543_195026_+	5-(carboxyamino)imidazole ribonucleotide mutase	A0A2P0VNU7	Tetraselmis_virus	6.2e-22	44.7
WP_001010412.1\|195012_196137_+	5-(carboxyamino)imidazole ribonucleotide synthase	NA	NA	NA	NA
WP_000174053.1\|196140_196845_+	phosphoribosylaminoimidazolesuccinocarboxamide synthase	M4R1E8	Synechococcus_phage	7.3e-48	42.1
WP_000848350.1\|196844_197108_+	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA
WP_161575643.1\|197109_197781_+	phosphoribosylformylglycinamidine synthase I	NA	NA	NA	NA
WP_000032727.1\|197773_199963_+	phosphoribosylformylglycinamidine synthase subunit PurL	A6N228	Microbacterium_phage	1.0e-140	39.7
WP_000483713.1\|199941_201426_+	amidophosphoribosyltransferase	A0A0M3SGR2	Mollivirus	3.2e-45	31.7
WP_161575644.1\|201418_202447_+	phosphoribosylformylglycinamidine cyclo-ligase	Q58MH8	Prochlorococcus_phage	1.3e-61	41.4
WP_161575645.1\|202449_203016_+	phosphoribosylglycinamide formyltransferase	M4QRX9	Synechococcus_phage	6.8e-28	39.6
WP_000709290.1\|203030_204509_+	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	Q58MG4	Prochlorococcus_phage	9.2e-77	51.5
WP_001101908.1\|204530_205778_+	phosphoribosylamine--glycine ligase	NA	NA	NA	NA
WP_000273253.1\|206042_206849_-	energy-coupling factor transporter transmembrane protein EcfT	NA	NA	NA	NA
WP_161575646.1\|206841_208242_-	ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	1.4e-10	26.3

DBSCAN-SWA_14

211421 : 215801

Streptococcus_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000685079.1\|211421_212594_+	class I SAM-dependent rRNA methyltransferase	W6LLI2	Streptococcus_phage	9.0e-75	42.8
WP_000505965.1\|212647_213190_+	hypothetical protein	NA	NA	NA	NA
WP_000437472.1\|213343_213610_+	phosphocarrier protein HPr	NA	NA	NA	NA
WP_161575647.1\|213612_215331_+	phosphoenolpyruvate--protein phosphotransferase	NA	NA	NA	NA
WP_001289614.1\|215567_215801_-	glutaredoxin family protein	G3MBF0	Bacillus_virus	8.4e-09	38.7

DBSCAN-SWA_15

221915 : 230747

Synechococcus_phage(25.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000957036.1\|221915_222467_-	peptide deformylase	E3SLL2	Synechococcus_phage	1.6e-13	42.2
WP_000668339.1\|222831_223458_+	cell-wall-binding lipoprotein	NA	NA	NA	NA
WP_000035320.1\|223628_224741_+	pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha	A0A0K0KW14	Prochlorococcus_phage	1.4e-05	27.8
WP_000068176.1\|224744_225722_+	alpha-ketoacid dehydrogenase subunit beta	NA	NA	NA	NA
WP_000863440.1\|225812_227105_+	2-oxo acid dehydrogenase subunit E2	NA	NA	NA	NA
WP_000260120.1\|227108_228515_+	dihydrolipoyl dehydrogenase	A0A2K5B2C5	Erysipelothrix_phage	1.6e-46	29.1
WP_000455597.1\|228682_228958_+	UPF0223 family protein	NA	NA	NA	NA
WP_001020625.1\|229100_229640_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_000433551.1\|229652_230747_+	ABC transporter ATP-binding protein	Q6GZ03	Mycoplasma_phage	1.4e-37	44.3

DBSCAN-SWA_16

238882 : 240730

Erysipelothrix_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000182654.1\|238882_240730_+	translational GTPase TypA	A0A2K5B2A5	Erysipelothrix_phage	1.8e-21	26.2

DBSCAN-SWA_17

252247 : 255155

Paramecium_bursaria_Chlorella_virus(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000757569.1\|252247_253174_-	glycerophosphodiester phosphodiesterase	M1I1K8	Paramecium_bursaria_Chlorella_virus	1.7e-12	26.2
WP_001049150.1\|253412_253667_+	YlbG family protein	NA	NA	NA	NA
WP_000814565.1\|253669_254059_-	hypothetical protein	NA	NA	NA	NA
WP_001263796.1\|254128_254671_+	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	NA	NA	NA	NA
WP_000401377.1\|254672_255155_+	pantetheine-phosphate adenylyltransferase	A0A1B1IVQ3	uncultured_Mediterranean_phage	2.6e-28	46.2

DBSCAN-SWA_18

267102 : 268161

Orpheovirus(100.0%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000003559.1\|267102_268161_+\|tRNA	phenylalanine--tRNA ligase subunit alpha	A0A2I2L4E3	Orpheovirus	1.9e-31	35.5

DBSCAN-SWA_19

272902 : 277460

Bodo_saltans_virus(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000161942.1\|272902_274615_+	DNA polymerase/3'-5' exonuclease PolX	A0A2H4UV14	Bodo_saltans_virus	8.9e-15	24.0
WP_001249285.1\|274624_276973_+	endonuclease MutS2	F2QAF8	Phaeocystis_pouchetii_virus	1.1e-15	25.3
WP_001018928.1\|277145_277460_+	thioredoxin	A0A1X9I9P5	Staphylococcus_phage	6.6e-25	46.6

DBSCAN-SWA_20

291462 : 293422

Staphylococcus_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000857483.1\|291462_292422_-	beta-channel forming cytolysin	A0A2H4PQH7	Staphylococcus_phage	2.8e-34	29.9
WP_000765708.1\|293094_293241_+	hypothetical protein	NA	NA	NA	NA
WP_001802045.1\|293197_293422_+	hypothetical protein	A0A2H4PQT0	Staphylococcus_phage	5.6e-18	71.4

DBSCAN-SWA_21

302505 : 302694

Staphylococcus_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001245802.1\|302505_302694_+	hypothetical protein	A0A0K1LL29	Staphylococcus_phage	3.8e-20	86.9

DBSCAN-SWA_22

322284 : 325038

Orpheovirus(100.0%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000384691.1\|322284_325038_+\|tRNA	isoleucine--tRNA ligase	A0A2I2L3Y0	Orpheovirus	3.6e-90	28.0

DBSCAN-SWA_23

329501 : 334112

Enterobacteria_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_161575651.1\|329501_330809_+	uracil permease	Q9KX94	Enterobacteria_phage	5.7e-54	34.0
WP_001016166.1\|330836_331718_+	aspartate carbamoyltransferase catalytic subunit	A0A1J0F9B8	Only_Syngen_Nebraska_virus	4.6e-31	33.9
WP_050956439.1\|331735_333010_+	dihydroorotase	NA	NA	NA	NA
WP_001190913.1\|333011_334112_+	glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit	R4TGJ8	Halovirus	5.6e-63	36.7

DBSCAN-SWA_24

338079 : 338691

Pandoravirus(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001040245.1\|338079_338691_+	orotate phosphoribosyltransferase	S4VS55	Pandoravirus	6.2e-27	33.8

DBSCAN-SWA_25

342005 : 344262

Abalone_herpesvirus(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000368227.1\|342005_342629_+	guanylate kinase	A0A143DIC6	Abalone_herpesvirus	3.6e-22	34.7
WP_000933956.1\|342628_342847_+	DNA-directed RNA polymerase subunit omega	NA	NA	NA	NA
WP_161575652.1\|343062_344262_+	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC	Q9HH70	Methanothermobacter_phage	1.2e-42	32.9

DBSCAN-SWA_26

349274 : 350210

Prochlorococcus_phage(100.0%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_161575653.1\|349274_350210_+\|tRNA	methionyl-tRNA formyltransferase	E3SNR5	Prochlorococcus_phage	4.7e-10	28.3

DBSCAN-SWA_27

353357 : 355352

Moumouvirus(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000579564.1\|353357_355352_+	serine/threonine protein kinase Stk1	M1PCM5	Moumouvirus	5.5e-24	34.8

DBSCAN-SWA_28

365722 : 367779

Trichoplusia_ni_ascovirus(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000167269.1\|365722_366457_+	3-oxoacyl-[acyl-carrier-protein] reductase	Q06VL0	Trichoplusia_ni_ascovirus	3.1e-17	30.3
WP_000426914.1\|366698_366932_+	acyl carrier protein	E3SSM9	Prochlorococcus_phage	1.6e-07	63.3
WP_000043237.1\|367047_367779_+	ribonuclease III	A0A0G2Y7P9	Acanthamoeba_polyphaga_mimivirus	5.9e-24	28.8

DBSCAN-SWA_29

381163 : 394834

Emiliania_huxleyi_virus(16.67%)

tRNA,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000176394.1\|381163_381931_+	ribonuclease HII	G9E3X7	Emiliania_huxleyi_virus	2.5e-25	44.1
WP_001020801.1\|382039_383206_+	ADP-forming succinate--CoA ligase subunit beta	NA	NA	NA	NA
WP_000110253.1\|383227_384136_+	succinate--CoA ligase subunit alpha	A0A2K9L1S3	Tupanvirus	3.0e-17	33.2
WP_001041662.1\|384362_385481_+	LysM peptidoglycan-binding domain-containing protein	A0A1W6JQB6	Staphylococcus_phage	9.5e-50	61.1
WP_000672867.1\|385508_386753_+	FemA/FemB family glycyltransferase FmhC	NA	NA	NA	NA
WP_000593192.1\|386925_387798_+	DNA-protecting protein DprA	NA	NA	NA	NA
WP_001548566.1\|387971_390047_+	type I DNA topoisomerase	A0A1V0SCS0	Indivirus	1.7e-105	39.2
WP_000195254.1\|390202_391510_+\|tRNA	methylenetetrahydrofolate--tRNA-(uracil(54)- C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO	NA	NA	NA	NA
WP_001015597.1\|391926_392823_+	tyrosine recombinase XerC	A0A0K2CP59	Brevibacillus_phage	3.6e-31	31.5
WP_000072681.1\|392819_393365_+\|protease	ATP-dependent protease subunit HslV	NA	NA	NA	NA
WP_000379054.1\|393430_394834_+\|protease	ATP-dependent protease ATPase subunit HslU	A0A1B2IDZ7	Erwinia_phage	4.9e-27	25.6

DBSCAN-SWA_30

399609 : 400380

Flavobacterium_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000473705.1\|399609_400380_+	isoprenyl transferase	R9W0U9	Flavobacterium_phage	7.3e-25	41.5

DBSCAN-SWA_31

404678 : 416491

Clostridium_phage(33.33%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001820550.1\|404678_408989_+	DNA polymerase III subunit alpha	A0A0A8WJ41	Clostridium_phage	3.5e-23	41.2
WP_161575655.1\|409278_409746_+	ribosome maturation factor RimP	NA	NA	NA	NA
WP_161575656.1\|409766_410942_+	transcription termination/antitermination protein NusA	NA	NA	NA	NA
WP_000727423.1\|410962_411247_+	YlxR family protein	NA	NA	NA	NA
WP_000020853.1\|411243_411561_+	YlxQ family RNA-binding protein	NA	NA	NA	NA
WP_000043634.1\|411565_413683_+	translation initiation factor IF-2	E3T4N3	Cafeteria_roenbergensis_virus	2.4e-25	25.1
WP_000097322.1\|414068_414419_+	30S ribosome-binding factor RbfA	NA	NA	NA	NA
WP_161575657.1\|414587_415505_+\|tRNA	tRNA pseudouridine(55) synthase TruB	NA	NA	NA	NA
WP_000864185.1\|415519_416491_+	riboflavin biosynthesis protein RibF	A0A1V0SJE1	Klosneuvirus	1.7e-07	32.1

DBSCAN-SWA_32

421631 : 427175

Mycobacterium_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_161575773.1\|421631_423875_+	DNA translocase FtsK	S5VNE3	Mycobacterium_phage	6.9e-84	47.7
WP_001293307.1\|423879_424593_+	GntR family transcriptional regulator	NA	NA	NA	NA
WP_000089941.1\|424623_425889_+	insulinase family protein	A0A1X9I714	Streptococcus_phage	1.2e-40	26.8
WP_161575658.1\|425888_427175_+	insulinase family protein	G3MBJ8	Bacillus_virus	6.7e-15	27.9

DBSCAN-SWA_33

431376 : 432420

Bacillus_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000368166.1\|431376_432420_+	recombinase RecA	A0A0S2MVG1	Bacillus_phage	9.3e-124	69.2

DBSCAN-SWA_34

441834 : 448306

Cafeteria_roenbergensis_virus(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000073353.1\|441834_444453_+	DNA mismatch repair protein MutS	E3T5Q7	Cafeteria_roenbergensis_virus	2.9e-41	23.8
WP_000516261.1\|444465_446475_+	DNA mismatch repair endonuclease MutL	A0A1B2LRQ5	Wolbachia_phage	2.8e-60	30.3
WP_001077635.1\|446480_447023_+	glycerol-3-phosphate responsive antiterminator	NA	NA	NA	NA
WP_001103743.1\|447487_448306_+	aquaporin family protein	M1H4F4	Acanthocystis_turfacea_Chlorella_virus	2.4e-26	35.1

DBSCAN-SWA_35

454248 : 454725

Fowlpox_virus(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000448078.1\|454248_454725_-	glutathione peroxidase	Q70H87	Fowlpox_virus	1.2e-22	38.0

DBSCAN-SWA_36

459794 : 466218

Staphylococcus_phage(66.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001789891.1\|459794_459992_+	hypothetical protein	A0A1W6JNK0	Staphylococcus_phage	1.7e-10	48.4
WP_001789892.1\|460680_460905_+	hypothetical protein	A0A1W6JNK0	Staphylococcus_phage	4.3e-18	71.0
WP_001002340.1\|461197_461404_+	hypothetical protein	A0A2H4PQT0	Staphylococcus_phage	1.3e-13	59.7
WP_001788716.1\|462104_462215_+	hypothetical protein	NA	NA	NA	NA
WP_000006110.1\|462642_462828_+	hypothetical protein	A0A0F6N3H3	Staphylococcus_phage	2.4e-19	78.7
WP_000477492.1\|463339_463444_+	hypothetical protein	NA	NA	NA	NA
WP_001791646.1\|463398_463572_+	hypothetical protein	NA	NA	NA	NA
WP_000956747.1\|463572_463824_+	hypothetical protein	NA	NA	NA	NA
WP_000899337.1\|463869_464454_+	hypothetical protein	Q4ZE35	Staphylococcus_virus	2.0e-30	72.0
WP_000906224.1\|464574_464823_+	hypothetical protein	NA	NA	NA	NA
WP_001790531.1\|464857_464980_+	hypothetical protein	NA	NA	NA	NA
WP_000903039.1\|465099_465366_+	hypothetical protein	NA	NA	NA	NA
WP_000600812.1\|465362_465500_+	hypothetical protein	NA	NA	NA	NA
WP_000900530.1\|465927_466218_+	hypothetical protein	S6B1L4	Thermus_phage	5.4e-05	35.1

DBSCAN-SWA_37

470767 : 475043

Anomala_cuprea_entomopoxvirus(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000593436.1\|470767_471676_+	ABC transporter ATP-binding protein	W6JKT0	Anomala_cuprea_entomopoxvirus	3.1e-22	25.9
WP_000603968.1\|471644_472376_+	ABC transporter permease	NA	NA	NA	NA
WP_115172190.1\|472379_473471_+	sensor histidine kinase	NA	NA	NA	NA
WP_000202390.1\|473467_474070_+	response regulator transcription factor	NA	NA	NA	NA
WP_001027143.1\|474182_474371_-	hypothetical protein	NA	NA	NA	NA
WP_000841351.1\|474509_475043_+	thermonuclease family protein	A0A1P8CWK6	Bacillus_phage	3.4e-21	43.5

DBSCAN-SWA_38

485179 : 490835

Tupanvirus(25.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_050956447.1\|485179_486697_+	catalase	A0A2K9L0T1	Tupanvirus	1.5e-90	43.0
WP_001265708.1\|486787_486937_+	50S ribosomal protein L33	NA	NA	NA	NA
WP_001085655.1\|487390_487660_+	30S ribosomal protein S14	NA	NA	NA	NA
WP_000688126.1\|487816_488794_+	GMP reductase	Q4ZCY7	Staphylococcus_virus	2.1e-186	100.0
WP_001791425.1\|488790_488895_-	hypothetical protein	NA	NA	NA	NA
WP_161575659.1\|488968_489832_+	CAP domain-containing protein	U5Q0C0	Bacillus_phage	4.1e-16	41.5
WP_001208760.1\|490211_490835_-	transcriptional repressor LexA	A0A1B2APZ1	Phage_Wrath	3.5e-17	63.8

DBSCAN-SWA_39

494984 : 496106

Staphylococcus_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000691284.1\|494984_496106_+	exonuclease SbcCD subunit D	A0A1X9I9U0	Staphylococcus_phage	4.3e-10	22.7

DBSCAN-SWA_40

499775 : 501422

Vibrio_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001088978.1\|499775_501422_+	BCCT family transporter	A0A2I7QNT1	Vibrio_phage	2.5e-22	24.4

DBSCAN-SWA_41

507358 : 511752

Bacillus_virus(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001548666.1\|507358_509350_+	DNA topoisomerase IV subunit B	G3M9Z3	Bacillus_virus	8.0e-116	40.5
WP_001289569.1\|509349_511752_+	DNA topoisomerase IV subunit A	A0A172JHV7	Bacillus_phage	1.8e-93	32.2

DBSCAN-SWA_42

521411 : 522674

Bacillus_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000283016.1\|521411_522674_+	Y-family DNA polymerase	O64031	Bacillus_phage	2.6e-96	44.3

DBSCAN-SWA_43

526992 : 529347

Acinetobacter_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_161575662.1\|526992_527559_+	aminodeoxychorismate/anthranilate synthase component II	A0A0P0IKJ1	Acinetobacter_phage	1.3e-23	32.1
WP_000173832.1\|527564_528563_+	anthranilate phosphoribosyltransferase	A0A0N7IRD9	Acinetobacter_phage	3.8e-34	35.3
WP_000154116.1\|528564_529347_+	indole-3-glycerol phosphate synthase TrpC	A0A0P0IR83	Acinetobacter_phage	1.2e-27	36.3

DBSCAN-SWA_44

536805 : 537507

Tupanvirus(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000571258.1\|536805_537507_-	ABC transporter ATP-binding protein	A0A2K9L3Z8	Tupanvirus	1.5e-13	30.3

DBSCAN-SWA_45

540921 : 544375

Streptococcus_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_048665379.1\|540921_542736_+	oligoendopeptidase F	A0A1X9I5X5	Streptococcus_phage	2.6e-153	47.0
WP_000974847.1\|542875_543517_-	phosphate signaling complex protein PhoU	NA	NA	NA	NA
WP_161575664.1\|543523_544375_-	phosphate ABC transporter ATP-binding protein	A0A1V0SE00	Indivirus	6.8e-16	30.4

DBSCAN-SWA_46

549461 : 551063

Klosneuvirus(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000942300.1\|549461_551063_+	ATP-binding cassette domain-containing protein	A0A1V0SKJ1	Klosneuvirus	5.5e-51	25.7

DBSCAN-SWA_47

558908 : 563939

Yellowstone_lake_phycodnavirus(33.33%)

lysis

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000216946.1\|558908_560174_+	diaminopimelate decarboxylase	A0A0P0YM38	Yellowstone_lake_phycodnavirus	6.2e-13	23.2
WP_000876201.1\|560413_560815_-	sarA expression modulator protein Msa	NA	NA	NA	NA
WP_000809131.1\|561011_561212_-	cold-shock protein	Q9AZD3	Lactococcus_phage	8.4e-18	66.2
WP_000269923.1\|561382_561691_-	DUF1033 family protein	NA	NA	NA	NA
WP_001215907.1\|561853_562123_+	acylphosphatase	NA	NA	NA	NA
WP_001788788.1\|562141_562771_+\|lysis	5-bromo-4-chloroindolyl phosphate hydrolysis protein	NA	NA	NA	NA
WP_000138413.1\|562802_563939_+	toxic anion resistance protein	A0A291I9K4	Lactobacillus_phage	7.4e-34	28.3

DBSCAN-SWA_48

568419 : 569211

Halovirus(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001185421.1\|568419_569211_-	MoxR family ATPase	R4TG24	Halovirus	3.3e-12	34.2

DBSCAN-SWA_49

575376 : 577388

Hokovirus(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000166801.1\|575376_576732_-	sensor histidine kinase ArlS	A0A1V0SGX0	Hokovirus	3.5e-14	27.8
WP_000192137.1\|576728_577388_-	response regulator transcription factor ArlR	W8CYM9	Bacillus_phage	1.1e-34	33.8

DBSCAN-SWA_50

580796 : 590186

Staphylococcus_phage(60.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000342125.1\|580796_582287_-	S41 family peptidase	A0A0R6PIZ1	Moraxella_phage	2.3e-22	30.5
WP_161575667.1\|582478_582700_-	YozE family protein	NA	NA	NA	NA
WP_000473652.1\|582699_583200_-	PTS glucose transporter subunit IIA	NA	NA	NA	NA
WP_000913315.1\|583211_583640_-	peptide-methionine (R)-S-oxide reductase MsrB	NA	NA	NA	NA
WP_000159902.1\|583632_584166_-	peptide-methionine (S)-S-oxide reductase MsrA	NA	NA	NA	NA
WP_000166059.1\|584251_585091_-	fatty acid kinase FakB2	A0A0N9SI50	Staphylococcus_phage	2.3e-48	77.3
WP_000175751.1\|585105_585585_-	dihydrofolate reductase	A0A0N9S8H6	Staphylococcus_phage	2.6e-73	79.2
WP_000934885.1\|585784_586741_-	thymidylate synthase	A0A0N9SH48	Staphylococcus_phage	1.6e-167	85.2
WP_000995287.1\|587164_587602_-	BrxA/BrxB family bacilliredoxin	NA	NA	NA	NA
WP_000404650.1\|587617_588742_-	virulence factor C	NA	NA	NA	NA
WP_000691942.1\|588779_589031_-	hypothetical protein	NA	NA	NA	NA
WP_001795441.1\|589042_589237_-	zinc-finger domain-containing protein	NA	NA	NA	NA
WP_000282171.1\|589481_590186_+	queuosine precursor transporter	A0A2H4J2N7	uncultured_Caudovirales_phage	8.4e-12	23.8

DBSCAN-SWA_51

629086 : 629965

Bacillus_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001133011.1\|629086_629965_-	5'-3' exonuclease	S5M4P0	Bacillus_phage	6.2e-20	29.5

DBSCAN-SWA_52

639239 : 639917

Bacillus_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001795446.1\|639239_639917_+	Holliday junction resolvase RecU	A0A1C8E9C3	Bacillus_phage	1.9e-24	35.5

DBSCAN-SWA_53

643657 : 651163

Temperate_phage(25.0%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000362212.1\|643657_644344_-	DnaD domain-containing protein	Q938N2	Temperate_phage	5.5e-08	32.6
WP_000858789.1\|644671_645964_-\|tRNA	asparagine--tRNA ligase	A0A2P1EMB4	Moumouvirus	1.9e-54	30.0
WP_000525078.1\|646285_648979_-	ATP-dependent helicase DinG	A0A1X9I5C8	Streptococcus_phage	8.2e-47	34.4
WP_000049911.1\|649002_649974_-	biotin--[acetyl-CoA-carboxylase] ligase	NA	NA	NA	NA
WP_000361544.1\|649960_651163_-\|tRNA	CCA tRNA nucleotidyltransferase	H7BUW3	unidentified_phage	3.2e-35	42.5

DBSCAN-SWA_54

654533 : 655109

Bacillus_virus(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000005213.1\|654533_655109_-	IDEAL domain-containing protein	G3MAV7	Bacillus_virus	2.7e-08	27.2

DBSCAN-SWA_55

658771 : 664238

Pandoravirus(25.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001269929.1\|658771_659938_-	chorismate synthase	A0A291AU41	Pandoravirus	7.6e-34	32.1
WP_000789522.1\|660323_660524_-	hypothetical protein	NA	NA	NA	NA
WP_000442480.1\|660732_661182_-	nucleoside-diphosphate kinase	D2E8E1	Anguillid_herpesvirus	2.4e-28	43.8
WP_001817755.1\|661273_662218_-	heptaprenyl diphosphate synthase subunit II	A0A1V0SE37	Indivirus	1.3e-10	24.4
WP_000774684.1\|662234_662960_-	demethylmenaquinone methyltransferase	NA	NA	NA	NA
WP_000450553.1\|662962_663535_-	heptaprenyl diphosphate synthase component 1	NA	NA	NA	NA
WP_001043863.1\|663965_664238_-	HU family DNA-binding protein	A7KV42	Bacillus_phage	4.2e-28	73.3

DBSCAN-SWA_56

673662 : 676341

Acanthamoeba_polyphaga_moumouvirus(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000902119.1\|673662_675042_-	ATP-dependent DNA helicase RecQ	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	2.9e-56	33.6
WP_001163801.1\|675031_675985_-	hypothetical protein	NA	NA	NA	NA
WP_001151997.1\|676092_676341_+	ferredoxin	A0A127AYY7	Bacillus_phage	8.3e-15	48.0

DBSCAN-SWA_57

680732 : 692346

Staphylococcus_phage(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001033768.1\|680732_682895_-	hypothetical protein	B5WZK7	Staphylococcus_phage	1.1e-107	97.5
WP_001548912.1\|682887_683817_-	DUF1672 domain-containing protein	NA	NA	NA	NA
WP_000987769.1\|684061_685813_-	HAMP domain-containing protein	A0A1V0SGX0	Hokovirus	1.7e-21	33.6
WP_048665337.1\|685793_686519_-	response regulator transcription factor	W8CYM9	Bacillus_phage	3.5e-45	43.0
WP_000159577.1\|686651_687389_-	rRNA pseudouridine synthase	NA	NA	NA	NA
WP_000368653.1\|687381_687924_-	SMC-Scp complex subunit ScpB	NA	NA	NA	NA
WP_000273371.1\|687916_688648_-	segregation/condensation protein A	A0A1B1IVW1	uncultured_Mediterranean_phage	7.9e-05	21.8
WP_161575671.1\|688739_689246_+	DUF309 domain-containing protein	NA	NA	NA	NA
WP_000447733.1\|689323_690211_-	site-specific tyrosine recombinase XerD	A0A0K2CP59	Brevibacillus_phage	5.6e-37	31.1
WP_000392691.1\|690259_690709_-	transcriptional repressor	NA	NA	NA	NA
WP_000365246.1\|690813_691356_-	NUDIX hydrolase	NA	NA	NA	NA
WP_001171351.1\|691437_692346_+	aldo/keto reductase	A0A1V0SKP9	Klosneuvirus	3.4e-05	31.5

DBSCAN-SWA_58

695875 : 697360

Cyanophage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000105070.1\|695875_697360_+	glucose-6-phosphate dehydrogenase	M4SIY3	Cyanophage	2.4e-80	37.8

DBSCAN-SWA_59

702006 : 703413

Synechococcus_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000193707.1\|702006_703413_-	NADP-dependent phosphogluconate dehydrogenase	A0A222YX62	Synechococcus_phage	4.3e-31	31.1

DBSCAN-SWA_60

710242 : 716813

Indivirus(66.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_161575676.1\|710242_711664_-	dihydrolipoyl dehydrogenase	A0A2K5B2C5	Erysipelothrix_phage	1.5e-39	26.1
WP_153227785.1\|711814_713494_-	DNA repair protein RecN	NA	NA	NA	NA
WP_001124985.1\|713509_713962_-	transcriptional regulator ArgR	NA	NA	NA	NA
WP_000183378.1\|714393_715275_-	polyprenyl synthetase family protein	A0A1V0SE37	Indivirus	8.9e-11	26.1
WP_000159865.1\|715252_715483_-	exodeoxyribonuclease VII small subunit	NA	NA	NA	NA
WP_161575677.1\|715475_716813_-	exodeoxyribonuclease VII large subunit	A0A1V0SD82	Indivirus	3.5e-43	37.7

DBSCAN-SWA_61

724312 : 727124

Prochlorococcus_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000202189.1\|724312_725785_-	glycine dehydrogenase subunit 2	E3SN07	Prochlorococcus_phage	6.2e-81	41.3
WP_048665334.1\|725777_727124_-	aminomethyl-transferring glycine dehydrogenase subunit GcvPA	E3SN07	Prochlorococcus_phage	5.9e-62	38.6

DBSCAN-SWA_62

732668 : 733292

Streptococcus_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001223008.1\|732668_733292_-	MBL fold metallo-hydrolase	A0A1X9I5D3	Streptococcus_phage	1.6e-30	37.1

DBSCAN-SWA_63

739465 : 753193

Klosneuvirus(25.0%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000863556.1\|739465_740065_-	superoxide dismutase	Q56AR7	Bacillus_thuringiensis_phage	9.2e-60	54.7
WP_001095260.1\|740340_740751_-	transcriptional repressor	NA	NA	NA	NA
WP_000564316.1\|740737_741601_-	metal ABC transporter permease	NA	NA	NA	NA
WP_048665333.1\|741642_742428_-	metal ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	6.1e-19	28.3
WP_000924214.1\|742553_743444_-	deoxyribonuclease IV	A0A2H4UU70	Bodo_saltans_virus	2.0e-26	33.1
WP_001062180.1\|743453_744800_-	DEAD/DEAH box helicase	A0A1V0SIR5	Klosneuvirus	5.3e-55	33.7
WP_000683931.1\|744913_746014_-	Nif3-like dinuclear metal center hexameric protein	A0A1S5V250	Saudi_moumouvirus	5.2e-08	29.6
WP_000624584.1\|746016_746694_-\|tRNA	tRNA (adenine-N(1))-methyltransferase	NA	NA	NA	NA
WP_001283055.1\|746824_747931_-	RNA polymerase sigma factor RpoD	A0A2I7SAT0	Vibrio_phage	1.1e-37	38.1
WP_001217261.1\|748154_749954_-	DNA primase	A0A0K1LMQ9	Caulobacter_phage	4.6e-54	36.0
WP_161575678.1\|750014_750833_-	kinase/pyrophosphorylase	NA	NA	NA	NA
WP_001789866.1\|750843_751467_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_001030080.1\|751801_753193_+\|tRNA	glycine--tRNA ligase	A0A1V0SIF1	Klosneuvirus	4.7e-46	27.4

DBSCAN-SWA_64

756246 : 757194

Rhizobium_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001117767.1\|756246_757194_-	PhoH family protein	L7TP00	Rhizobium_phage	6.4e-47	46.8

DBSCAN-SWA_65

763664 : 766772

Catovirus(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001119021.1\|763664_764804_-	molecular chaperone DnaJ	A0A1V0SBY2	Catovirus	1.2e-26	25.8
WP_000034716.1\|764939_766772_-	molecular chaperone DnaK	G8DDB7	Micromonas_pusilla_virus	4.4e-137	46.5

DBSCAN-SWA_66

770263 : 776427

Streptococcus_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000368341.1\|770263_772087_-	elongation factor 4	A0A1S5SF82	Streptococcus_phage	6.1e-22	25.1
WP_001274017.1\|772432_772684_+	30S ribosomal protein S20	NA	NA	NA	NA
WP_001282562.1\|772728_773703_-	DNA polymerase III subunit delta	NA	NA	NA	NA
WP_000953300.1\|773759_775907_-	DNA internalization-related competence protein ComEC/Rec2	Q332C0	Clostridium_botulinum_C_phage	1.2e-32	32.2
WP_000439693.1\|775965_776427_-	ComE operon protein 2	A7KUY9	Bacillus_phage	3.6e-35	58.8

DBSCAN-SWA_67

783696 : 786083

Staphylococcus_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001548981.1\|783696_784449_-	enterotoxin	A0EX09	Staphylococcus_phage	4.6e-48	39.8
WP_000542309.1\|784862_786083_-	Fic family protein	Q9AZ49	Lactococcus_phage	5.0e-52	33.3

DBSCAN-SWA_68

792755 : 828135

uncultured_Mediterranean_phage(18.75%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000648617.1\|792755_793379_-	uridine kinase	A0A1V0SAA3	Catovirus	2.8e-35	41.1
WP_000848304.1\|793378_794647_-	U32 family peptidase	Q6DW11	Phage_TP	4.0e-36	31.7
WP_000137775.1\|794658_795582_-	U32 family peptidase	NA	NA	NA	NA
WP_000342266.1\|795584_796223_-	O-methyltransferase	A0A2P1JQT7	Mycobacterium_phage	1.6e-09	28.8
WP_000134779.1\|796507_796816_-	DUF1292 domain-containing protein	NA	NA	NA	NA
WP_000939059.1\|796830_797259_-	Holliday junction resolvase RuvX	NA	NA	NA	NA
WP_000426912.1\|797262_797523_-	IreB family regulatory phosphoprotein	NA	NA	NA	NA
WP_000734064.1\|797585_800216_-\|tRNA	alanine--tRNA ligase	A0A1V0SK38	Klosneuvirus	3.2e-64	34.4
WP_001283311.1\|800558_803036_-	ATP-dependent RecD-like DNA helicase	A0A0K2FLP8	Brevibacillus_phage	1.1e-66	29.0
WP_000567028.1\|803037_803706_-	tetratricopeptide repeat protein	NA	NA	NA	NA
WP_000066097.1\|804167_805286_-\|tRNA	tRNA 2-thiouridine(34) synthase MnmA	NA	NA	NA	NA
WP_000409167.1\|805286_806429_-	cysteine desulfurase	A0A1X7QGF3	Faustovirus	8.3e-33	29.3
WP_000985886.1\|806740_807754_+	LLM class flavin-dependent oxidoreductase	NA	NA	NA	NA
WP_000009238.1\|807990_808137_-	hypothetical protein	NA	NA	NA	NA
WP_000752909.1\|808176_808359_-	CsbD family protein	NA	NA	NA	NA
WP_000704122.1\|808458_808881_-	Rrf2 family transcriptional regulator	NA	NA	NA	NA
WP_000102735.1\|808965_810240_+	replication-associated recombination protein A	A0A127AWE7	Bacillus_phage	1.8e-105	50.7
WP_000682646.1\|810400_811174_-\|tRNA	tRNA threonylcarbamoyladenosine dehydratase	NA	NA	NA	NA
WP_001790559.1\|811173_811302_-	hypothetical protein	NA	NA	NA	NA
WP_000044800.1\|811634_813401_-\|tRNA	aspartate--tRNA ligase	A0A2K9L0E9	Tupanvirus	1.3e-16	27.3
WP_000590826.1\|813416_814679_-\|tRNA	histidine--tRNA ligase	NA	NA	NA	NA
WP_000717800.1\|815139_816015_-	SH3 domain-containing protein	A0A0N9SGH1	Paenibacillus_phage	4.7e-12	33.7
WP_000869983.1\|816011_816464_-\|tRNA	D-tyrosyl-tRNA(Tyr) deacylase	NA	NA	NA	NA
WP_001058583.1\|816475_818665_-	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	A0A2I2L310	Orpheovirus	6.9e-12	37.7
WP_000364542.1\|819092_819611_-	adenine phosphoribosyltransferase	A0A1V0SKE5	Klosneuvirus	5.6e-29	46.5
WP_000594993.1\|819632_821906_-	single-stranded-DNA-specific exonuclease RecJ	A7KV88	Bacillus_phage	1.2e-62	28.8
WP_000749795.1\|822108_824388_-	protein translocase subunit SecDF	A0A1B1IVP7	uncultured_Mediterranean_phage	1.8e-31	35.8
WP_001160682.1\|824662_824923_-	preprotein translocase subunit YajC	A0A1B1IVR5	uncultured_Mediterranean_phage	8.2e-05	35.3
WP_001112045.1\|824941_826081_-\|tRNA	tRNA guanosine(34) transglycosylase Tgt	A0A1B1IVQ4	uncultured_Mediterranean_phage	5.4e-85	44.7
WP_001019172.1\|826103_827129_-\|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	NA	NA	NA	NA
WP_001005767.1\|827130_828135_-	Holliday junction branch migration DNA helicase RuvB	B3GAM6	uncultured_virus	1.7e-05	29.1

DBSCAN-SWA_69

838002 : 840633

Catovirus(100.0%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000425353.1\|838002_840633_-\|tRNA	valine--tRNA ligase	A0A1V0S951	Catovirus	3.7e-153	40.7

DBSCAN-SWA_70

850200 : 861353

Bacillus_virus(20.0%)

tRNA,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000472302.1\|850200_851463_-\|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	G3M9Z9	Bacillus_virus	5.0e-140	62.0
WP_000127573.1\|851613_852915_-	trigger factor	NA	NA	NA	NA
WP_011447025.1\|852962_853073_-	hypothetical protein	NA	NA	NA	NA
WP_048665328.1\|853077_854007_-	hypothetical protein	NA	NA	NA	NA
WP_000032657.1\|854025_854634_-	NUDIX domain-containing protein	A0A060AB76	Staphylococcus_phage	6.6e-21	35.9
WP_001138360.1\|854775_855132_-	50S ribosomal protein L20	NA	NA	NA	NA
WP_001125540.1\|855178_855379_-	50S ribosomal protein L35	NA	NA	NA	NA
WP_001791162.1\|855407_855935_-	translation initiation factor IF-3	A0A2L0UZ54	Agrobacterium_phage	4.1e-11	33.1
WP_000049154.1\|856163_857657_-	amino acid permease	NA	NA	NA	NA
WP_000435140.1\|858082_860020_-\|tRNA	threonine--tRNA ligase	A0A2K9L6B6	Tupanvirus	5.9e-116	36.0
WP_001790562.1\|860217_860340_-	hypothetical protein	NA	NA	NA	NA
WP_000808621.1\|860432_861353_-	primosomal protein DnaI	S5MU12	Brevibacillus_phage	8.1e-31	29.4

DBSCAN-SWA_71

865267 : 873431

Bacillus_virus(25.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001114452.1\|865267_866140_-	bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase	G3MA33	Bacillus_virus	2.0e-42	39.1
WP_001038308.1\|866155_868786_-	DNA polymerase I	A8E2B3	Enterococcus_phage	6.1e-47	33.0
WP_000849435.1\|869079_870567_-	hypothetical protein	NA	NA	NA	NA
WP_011443641.1\|871065_872727_-	PAS domain S-box protein	W8CYF6	Bacillus_phage	5.8e-35	39.4
WP_000080028.1\|872726_873431_-	response regulator transcription factor	Q6XM27	Feldmannia_irregularis_virus	1.6e-07	28.7

DBSCAN-SWA_72

880292 : 882050

Staphylococcus_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001232648.1\|880292_882050_-	pyruvate kinase	A0A2H4PQU5	Staphylococcus_phage	2.6e-41	100.0

DBSCAN-SWA_73

886983 : 890181

Streptomyces_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000226907.1\|886983_890181_-	DNA polymerase III subunit alpha	A0A2L1IZ23	Streptomyces_phage	1.3e-136	30.7

DBSCAN-SWA_74

907718 : 911853

Paramecium_bursaria_Chlorella_virus(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000174282.1\|907718_908462_-	glycerophosphoryl diester phosphodiesterase	M1HTS7	Paramecium_bursaria_Chlorella_virus	4.9e-18	30.0
WP_161575684.1\|908541_908988_+	OsmC family protein	NA	NA	NA	NA
WP_000291415.1\|909101_910262_+	alanine--glyoxylate aminotransferase family protein	NA	NA	NA	NA
WP_000808845.1\|910248_911853_+	phosphoglycerate dehydrogenase	A0A2H4PQU8	Staphylococcus_phage	1.2e-114	100.0

DBSCAN-SWA_75

915622 : 918253

uncultured_Mediterranean_phage(50.0%)

tRNA,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001279338.1\|915622_916897_+\|protease	trypsin-like serine protease	A0A1B1IRD3	uncultured_Mediterranean_phage	1.7e-10	29.0
WP_000186029.1\|916990_918253_-\|tRNA	tyrosine--tRNA ligase	K4F5T3	Cronobacter_phage	2.7e-85	42.1

DBSCAN-SWA_76

924869 : 926576

Staphylococcus_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000862083.1\|924869_926576_-	acetate--CoA ligase	A0A2H4PQU7	Staphylococcus_phage	1.2e-274	100.0

DBSCAN-SWA_77

935481 : 940809

Mycobacterium_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_161575685.1\|935481_939306_-	DNA translocase FtsK	A0A218M9A2	Mycobacterium_phage	2.0e-83	47.0
WP_001048368.1\|939326_939923_-	DUF4479 domain-containing protein	NA	NA	NA	NA
WP_001091387.1\|939951_940809_-	DUF1444 domain-containing protein	A0A2H4PQY3	Staphylococcus_phage	6.8e-72	100.0

DBSCAN-SWA_78

952575 : 1035429

Staphylococcus_phage(93.44%)

tRNA,protease,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000285019.1\|952575_953844_+	NAD(P)/FAD-dependent oxidoreductase	A0A2H4PQX1	Staphylococcus_phage	4.1e-57	100.0
WP_161575686.1\|953960_960521_-	LPXTG-anchored repetitive surface protein SasC	A0A2H4PQU6	Staphylococcus_phage	3.4e-304	98.1
WP_000836465.1\|960846_961158_-	rhodanese-like domain-containing protein	A0A2H4PQR9	Staphylococcus_phage	1.6e-52	100.0
WP_050956550.1\|961179_963594_-\|tRNA	leucine--tRNA ligase	A0A2H4PQS0	Staphylococcus_phage	0.0e+00	99.1
WP_001025061.1\|963884_965066_-	MFS transporter	A0A2H4PQR6	Staphylococcus_phage	5.6e-218	100.0
WP_161575687.1\|965175_966129_+	TIGR01212 family radical SAM protein	A0A2H4PQV5	Staphylococcus_phage	1.1e-78	99.3
WP_000764419.1\|966125_966689_+	methyltransferase domain-containing protein	A0A2H4PQV0	Staphylococcus_phage	8.3e-103	99.5
WP_161575688.1\|966808_967210_-	MarR family transcriptional regulator	NA	NA	NA	NA
WP_000266096.1\|968788_969616_-	alpha/beta hydrolase	NA	NA	NA	NA
WP_001790712.1\|969618_969738_-	hypothetical protein	NA	NA	NA	NA
WP_001196354.1\|969849_970851_+	proline dehydrogenase	A0A2H4PQT6	Staphylococcus_phage	9.0e-185	99.7
WP_001008551.1\|970972_971437_-	6,7-dimethyl-8-ribityllumazine synthase	A0A2H4PQS3	Staphylococcus_phage	5.8e-70	99.4
WP_001159022.1\|971449_972631_-	3,4-dihydroxy-2-butanone-4-phosphate synthase	A0A2H4PQS2	Staphylococcus_phage	6.6e-227	99.7
WP_000493892.1\|972641_973274_-	riboflavin synthase	A0A2H4PQS5	Staphylococcus_phage	1.7e-112	99.5
WP_000384181.1\|973280_974312_-	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	A0A2H4PQS8	Staphylococcus_phage	4.8e-197	99.4
WP_001261681.1\|974804_976307_-	FAD-dependent oxidoreductase	A0A2H4PQX2	Staphylococcus_phage	2.3e-30	100.0
WP_000221179.1\|976829_977144_+	winged helix-turn-helix transcriptional regulator	A0A2H4PQT4	Staphylococcus_phage	2.0e-53	100.0
WP_000989123.1\|977143_978436_+	arsenite efflux transporter membrane subunit ArsB	A0A2H4PQU3	Staphylococcus_phage	1.9e-227	99.3
WP_000163235.1\|978453_978849_+	arsenate reductase (thioredoxin)	A0A2H4PQT9	Staphylococcus_phage	6.3e-73	100.0
WP_001032833.1\|979143_979998_-	autolysin	Q4ZCC7	Staphylococcus_virus	9.8e-39	38.6
WP_000384171.1\|980273_980498_-	hypothetical protein	NA	NA	NA	NA
WP_000671063.1\|980696_981167_+	sigma-70 family RNA polymerase sigma factor	A0A2H4PQT5	Staphylococcus_phage	3.3e-81	98.1
WP_001030465.1\|981708_982152_-	hypothetical protein	A0A2H4PQT8	Staphylococcus_phage	3.0e-55	85.0
WP_001168904.1\|982447_983083_+\|protease	CPBP family intramembrane metalloprotease SdpA	NA	NA	NA	NA
WP_001096494.1\|983522_984236_-	transaldolase	M1PR54	Cyanophage	5.5e-19	35.3
WP_000091445.1\|984495_984798_+	hypothetical protein	NA	NA	NA	NA
WP_001200542.1\|985053_985419_+	fluoride efflux transporter CrcB	A0A2H4PQR0	Staphylococcus_phage	3.6e-59	100.0
WP_000623471.1\|985415_985769_+	CrcB family protein	A0A2H4PQQ7	Staphylococcus_phage	1.0e-21	99.1
WP_000453320.1\|987852_988686_-	aldo/keto reductase	A0A2H4PQR8	Staphylococcus_phage	9.6e-156	98.6
WP_000366154.1\|988897_989806_-	NERD domain-containing protein	A0A2H4PQQ8	Staphylococcus_phage	3.2e-136	98.7
WP_000933822.1\|989930_991124_-	methionine adenosyltransferase	A0A2H4PQS6	Staphylococcus_phage	1.9e-218	99.7
WP_000109906.1\|991494_993087_+	phosphoenolpyruvate carboxykinase (ATP)	A0A2H4PQN1	Staphylococcus_phage	0.0e+00	100.0
WP_000093392.1\|993222_993708_-\|transposase	IS200/IS605 family transposase	A0A1P8BMC0	Lactococcus_phage	4.9e-19	35.4
WP_002868962.1\|994082_994829_-	S9 family peptidase	A0A2H4PQM6	Staphylococcus_phage	7.1e-142	98.4
WP_000672014.1\|994833_995307_-	nucleoside triphosphatase YtkD	A0A2H4PQM4	Staphylococcus_phage	4.7e-83	98.1
WP_000718107.1\|995372_995630_+	membrane protein insertion efficiency factor YidD	A0A2H4PQM5	Staphylococcus_phage	7.2e-46	100.0
WP_000778523.1\|995626_996628_-	o-succinylbenzoate synthase	A0A2H4PQM0	Staphylococcus_phage	4.8e-186	97.6
WP_161575689.1\|996632_998111_-	o-succinylbenzoate--CoA ligase	A0A2H4PQM9	Staphylococcus_phage	7.6e-281	96.7
WP_161575774.1\|998269_998725_-	DUF4909 domain-containing protein	A0A2H4PQN7	Staphylococcus_phage	5.7e-78	97.9
WP_001795535.1\|999027_999678_+	calcium-binding protein	A0A2H4PQM8	Staphylococcus_phage	2.7e-44	88.4
WP_000070653.1\|999758_1000754_+	DUF4352 domain-containing protein	A0A2H4PQN2	Staphylococcus_phage	7.1e-73	96.4
WP_000669046.1\|1000829_1001456_+	hypothetical protein	A0A2H4PQM7	Staphylococcus_phage	7.1e-79	82.7
WP_000627551.1\|1001496_1001841_+	DUF3969 family protein	A0A2H4PQN6	Staphylococcus_phage	6.3e-53	92.0
WP_161575690.1\|1001938_1002490_+	hypothetical protein	A0A2H4PQN4	Staphylococcus_phage	1.0e-20	94.1
WP_000494956.1\|1002707_1003349_-	ImmA/IrrE family metallo-endopeptidase	A0A2H4PQN8	Staphylococcus_phage	2.6e-76	93.2
WP_000809857.1\|1003462_1003648_-	hypothetical protein	NA	NA	NA	NA
WP_000375476.1\|1003649_1003826_-	hypothetical protein	NA	NA	NA	NA
WP_000070812.1\|1003836_1004220_-	hypothetical protein	NA	NA	NA	NA
WP_001549059.1\|1004823_1004967_-\|transposase	transposase	A0A2H4PQU1	Staphylococcus_phage	6.4e-20	100.0
WP_001801861.1\|1005169_1005265_+	type I toxin-antitoxin system Fst family toxin PepA1	NA	NA	NA	NA
WP_001791893.1\|1005387_1005489_+	hypothetical protein	NA	NA	NA	NA
WP_002868972.1\|1005836_1006196_-	DUF1433 domain-containing protein	NA	NA	NA	NA
WP_161575691.1\|1011694_1012894_-	restriction endonuclease subunit S	A0A2H4PQP5	Staphylococcus_phage	6.1e-228	99.2
WP_001793440.1\|1012886_1014626_-	type I restriction-modification system subunit M	A0A2H4PQP4	Staphylococcus_phage	2.4e-289	100.0
WP_001791797.1\|1014606_1014741_-	hypothetical protein	NA	NA	NA	NA
WP_001038688.1\|1014805_1015525_-\|protease	serine protease SplF	A0A2H4PQP1	Staphylococcus_phage	1.1e-131	100.0
WP_001038759.1\|1015675_1016392_-\|protease	serine protease SplE	A0A2H4PQN5	Staphylococcus_phage	1.1e-131	100.0
WP_011447030.1\|1016493_1016601_+	hypothetical protein	NA	NA	NA	NA
WP_001038704.1\|1016549_1017269_-\|protease	serine protease SplD	A0A2H4PQP9	Staphylococcus_phage	4.6e-130	99.6
WP_001038867.1\|1017389_1018109_-\|protease	serine protease SplC	A0A2H4PQP7	Staphylococcus_phage	1.2e-130	99.2
WP_001039447.1\|1018166_1018889_-\|protease	serine protease SplB	A0A2H4PQN0	Staphylococcus_phage	2.4e-131	99.6
WP_001039435.1\|1019013_1019721_-\|protease	serine protease SplA	A0A2H4PQN3	Staphylococcus_phage	2.6e-130	100.0
WP_001092763.1\|1020684_1021251_+	DUF4888 domain-containing protein	A0A2H4PQH6	Staphylococcus_phage	3.3e-99	100.0
WP_000586140.1\|1021724_1022423_-	hypothetical protein	A0A2H4PQH0	Staphylococcus_phage	3.8e-113	94.4
WP_000581552.1\|1022419_1023181_-	lantibiotic immunity ABC transporter MutE/EpiE family permease subunit	A0A2H4PQH2	Staphylococcus_phage	4.4e-131	100.0
WP_001096791.1\|1023177_1023870_-	lantibiotic protection ABC transporter ATP-binding subunit	A0A2H4PQG7	Staphylococcus_phage	6.2e-124	100.0
WP_000691541.1\|1023892_1025266_-	S8 family serine peptidase	A0A2H4PQH1	Staphylococcus_phage	2.9e-258	100.0
WP_000504439.1\|1025275_1025794_-	enterotoxin	A0A2H4PQG9	Staphylococcus_phage	2.0e-95	100.0
WP_000566596.1\|1025809_1027054_-	lanthionine synthetase C family protein	A0A2H4PQH9	Staphylococcus_phage	5.1e-238	100.0
WP_001092605.1\|1027046_1030040_-	lantibiotic dehydratase	A0A2H4PQG8	Staphylococcus_phage	0.0e+00	97.3
WP_000416756.1\|1030104_1030248_-	gallidermin/nisin family lantibiotic	A0A2H4PQH4	Staphylococcus_phage	5.3e-14	80.9
WP_000416759.1\|1030984_1031128_-	gallidermin/nisin family lantibiotic	NA	NA	NA	NA
WP_000782464.1\|1031369_1032353_-	bi-component leukocidin LukED subunit D	A0A2H4PQH7	Staphylococcus_phage	2.3e-185	99.1
WP_000878802.1\|1032354_1033275_-	beta-channel forming cytolysin	A0A2H4PQI5	Staphylococcus_phage	2.3e-174	100.0
WP_001790220.1\|1034088_1034628_+	hypothetical protein	Q4ZCB9	Staphylococcus_virus	2.0e-61	76.8
WP_000206350.1\|1034640_1035429_+	DUF1828 domain-containing protein	A0A2H4PQI0	Staphylococcus_phage	5.3e-140	95.8

DBSCAN-SWA_79

1044310 : 1045051

Staphylococcus_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000216878.1\|1044310_1045051_-	ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	1.2e-24	29.8

DBSCAN-SWA_80

1054083 : 1060685

Streptococcus_phage(33.33%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_031795584.1\|1054083_1055439_+	cell division protein FtsK	A0A1S5SFB5	Streptococcus_phage	2.2e-45	29.3
WP_161575693.1\|1055635_1057552_+	hypothetical protein	NA	NA	NA	NA
WP_001553872.1\|1057541_1058579_+	CHAP domain-containing protein	A0A1X9SGZ2	Bradyrhizobium_phage	2.7e-06	31.4
WP_161575694.1\|1058585_1059179_+	hypothetical protein	NA	NA	NA	NA
WP_031904066.1\|1059226_1059589_+	cystatin-like fold lipoprotein	NA	NA	NA	NA
WP_161575695.1\|1059700_1060231_+\|transposase	IS30 family transposase	NA	NA	NA	NA
WP_078069959.1\|1060211_1060685_+\|transposase	IS30 family transposase	W5R8L2	Staphylococcus_phage	2.3e-29	45.0

DBSCAN-SWA_81

1069334 : 1069679

Streptococcus_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000290301.1\|1069334_1069679_-	YlbF/YmcA family competence regulator	A0A1X9I5Y8	Streptococcus_phage	7.5e-06	29.7

DBSCAN-SWA_82

1080515 : 1081244

Planktothrix_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001144055.1\|1080515_1081244_-	amino acid ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	1.0e-36	42.7

DBSCAN-SWA_83

1099388 : 1101125

Bacillus_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000597238.1\|1099388_1101125_-	SAV1866 family putative multidrug efflux ABC transporter	W8CYL7	Bacillus_phage	1.7e-53	30.4

DBSCAN-SWA_84

1116609 : 1117239

Bacillus_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000153530.1\|1116609_1117239_-	response regulator transcription factor	W8CYM9	Bacillus_phage	8.1e-06	30.8

DBSCAN-SWA_85

1122349 : 1122763

Staphylococcus_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_161575775.1\|1122349_1122763_-	hypothetical protein	A0A1Q1PVU5	Staphylococcus_phage	4.3e-16	36.9

DBSCAN-SWA_86

1126214 : 1131243

Staphylococcus_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000613733.1\|1126214_1126769_+	3'-5' exonuclease	B5WZL1	Staphylococcus_phage	9.2e-30	36.3
WP_000140176.1\|1126836_1127907_-	DNA polymerase IV	NA	NA	NA	NA
WP_000548781.1\|1128153_1128684_-	DUF3267 domain-containing protein	NA	NA	NA	NA
WP_001147868.1\|1128853_1130215_-	23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	A0A1X9I6F4	Streptococcus_phage	1.1e-103	43.8
WP_001231451.1\|1130295_1131243_-	diacylglycerol kinase	A0A1V0SBJ0	Catovirus	1.2e-16	27.8

DBSCAN-SWA_87

1138418 : 1145185

Ralstonia_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000774565.1\|1138418_1140422_-	NAD-dependent DNA ligase LigA	A0A0K2QQN8	Ralstonia_phage	5.8e-114	36.1
WP_000992921.1\|1140425_1142618_-	DNA helicase PcrA	A7KV33	Bacillus_phage	1.0e-135	42.2
WP_000272070.1\|1142614_1143307_-	heptaprenylglyceryl phosphate synthase	NA	NA	NA	NA
WP_001165363.1\|1143478_1143781_-	hypothetical protein	NA	NA	NA	NA
WP_000572878.1\|1143889_1145185_-	adenylosuccinate lyase	A0A1B3B081	Gordonia_phage	1.6e-16	32.9

DBSCAN-SWA_88

1148887 : 1151171

Bacillus_virus(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000040873.1\|1148887_1149709_-	ammonia-dependent NAD(+) synthetase	G3MA24	Bacillus_virus	1.8e-69	52.7
WP_000284431.1\|1149701_1151171_-	nicotinate phosphoribosyltransferase	G3MA18	Bacillus_virus	4.5e-108	45.1

DBSCAN-SWA_89

1155201 : 1157231

Bacillus_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000275730.1\|1155201_1156299_-	pectate lyase	U5PWM6	Bacillus_phage	1.9e-47	34.6
WP_000149686.1\|1156670_1157231_+	cysteine hydrolase	G3MA16	Bacillus_virus	2.0e-32	41.2

DBSCAN-SWA_90

1163852 : 1206416

Staphylococcus_phage(76.92%)

integrase,terminase,protease,coat

attL 1176226:1176241|attR 1209781:1209796

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000733621.1\|1163852_1164698_+	penicillin-hydrolyzing class A beta-lactamase BlaZ	A0A1B0VBP7	Salmonella_phage	3.4e-31	34.3
WP_000612780.1\|1165011_1165422_+	YolD-like family protein	U3PG23	Staphylococcus_phage	1.4e-30	54.2
WP_000514485.1\|1165450_1165816_-	hypothetical protein	NA	NA	NA	NA
WP_161575697.1\|1165824_1167888_-\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_000706211.1\|1167890_1169003_-\|integrase	tyrosine-type recombinase/integrase	P97010	Streptococcus_pyogenes_phage	8.7e-11	31.0
WP_000267034.1\|1170064_1170238_-	hypothetical protein	NA	NA	NA	NA
WP_001188077.1\|1170688_1171729_+	linear amide C-N hydrolase	NA	NA	NA	NA
WP_000713072.1\|1171785_1172628_-	DUF4097 family beta strand repeat protein	NA	NA	NA	NA
WP_001033971.1\|1172624_1173182_-	DUF1700 domain-containing protein	NA	NA	NA	NA
WP_000966288.1\|1173241_1173766_-	membrane protein	NA	NA	NA	NA
WP_000182842.1\|1173886_1174450_+	thioredoxin family protein	NA	NA	NA	NA
WP_001221651.1\|1174515_1175256_-	phenol-soluble modulin export ABC transporter permease subunit PmtD	NA	NA	NA	NA
WP_000763048.1\|1175255_1176128_-	phenol-soluble modulin export ABC transporter ATP-binding protein PmtC	A0A2H4PQG7	Staphylococcus_phage	6.1e-28	35.2
WP_000645727.1\|1176124_1176805_-	phenol-soluble modulin export ABC transporter permease subunit PmtB	NA	NA	NA	NA
1176226:1176241	attL	NA	NA	NA	NA
WP_000991302.1\|1176805_1177702_-	phenol-soluble modulin export ABC transporter ATP-binding protein PmtA	A0A2H4PQG7	Staphylococcus_phage	1.1e-16	30.2
WP_000691584.1\|1177698_1178079_-	GntR family transcriptional regulator	NA	NA	NA	NA
WP_000681968.1\|1178337_1178514_-	hypothetical protein	NA	NA	NA	NA
WP_000990056.1\|1178756_1178855_-	hypothetical protein	NA	NA	NA	NA
WP_001068542.1\|1179054_1180341_+	aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA
WP_001549158.1\|1180965_1182720_-	MAP domain-containing protein	NA	NA	NA	NA
WP_161575698.1\|1183108_1184101_+	sphingomyelin phosphodiesterase	A0A1P8L6H7	Staphylococcus_phage	2.6e-160	99.3
WP_000595324.1\|1184338_1185355_-	bi-component leukocidin LukGH subunit G	A0A2I6PER8	Staphylococcus_phage	1.1e-25	29.0
WP_000791407.1\|1185376_1186432_-	bi-component leukocidin LukGH subunit H	A0A1X9IGW5	Staphylococcus_phage	2.8e-35	34.3
WP_000206638.1\|1186866_1188090_+	ArgE/DapE family deacylase	NA	NA	NA	NA
WP_000812008.1\|1188461_1189307_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_161575699.1\|1189368_1190280_-	iron-hydroxamate ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_029625651.1\|1191296_1191764_-	hypothetical protein	NA	NA	NA	NA
WP_029625650.1\|1191776_1192790_-	hypothetical protein	NA	NA	NA	NA
WP_001293084.1\|1193176_1193746_-\|terminase	terminase small subunit	Q4ZE85	Staphylococcus_phage	8.7e-100	96.8
WP_078065371.1\|1193742_1193955_-	pathogenicity island family protein	Q4ZE86	Staphylococcus_phage	5.4e-31	94.3
WP_000771371.1\|1194086_1194614_-\|coat	spore coat protein	Q4ZE87	Staphylococcus_phage	1.4e-88	97.1
WP_029625649.1\|1194666_1195320_-	hypothetical protein	Q4ZE82	Staphylococcus_phage	1.7e-115	99.1
WP_000443639.1\|1195350_1195692_-	hypothetical protein	Q4ZE66	Staphylococcus_phage	6.4e-58	99.1
WP_001019811.1\|1196227_1196869_-	hypothetical protein	Q4ZE67	Staphylococcus_phage	2.2e-107	91.1
WP_000998179.1\|1196865_1197150_-	hypothetical protein	A0A1W6JQE4	Staphylococcus_phage	1.2e-49	100.0
WP_153156945.1\|1197151_1197514_-	pathogenicity island protein	A0A1W6JQD5	Staphylococcus_phage	2.9e-64	97.5
WP_094754105.1\|1197792_1199262_-	virulence-associated protein E	A0A1W6JQD6	Staphylococcus_phage	4.2e-279	96.3
WP_161575700.1\|1199278_1200148_-	mobile element-associated protein	A0A1W6JQL5	Staphylococcus_phage	6.1e-161	96.2
WP_001103933.1\|1200214_1200532_-	DUF1474 family protein	Q4ZE75	Staphylococcus_phage	1.2e-18	48.1
WP_001058487.1\|1200534_1200744_-	hypothetical protein	Q4ZE76	Staphylococcus_phage	2.2e-29	92.8
WP_000708434.1\|1200736_1200883_-	hypothetical protein	NA	NA	NA	NA
WP_072532959.1\|1200879_1201197_-	helix-turn-helix domain-containing protein	A0A1W6JQE0	Staphylococcus_phage	1.3e-49	96.2
WP_000153640.1\|1201201_1201420_-	helix-turn-helix transcriptional regulator	A0A2H4JB11	uncultured_Caudovirales_phage	1.3e-19	66.7
WP_000620857.1\|1201592_1202267_+	helix-turn-helix transcriptional regulator	A0A2H4JGT9	uncultured_Caudovirales_phage	1.6e-39	45.8
WP_000179346.1\|1202280_1203453_+\|integrase	site-specific integrase	A0A1W6JQD3	Staphylococcus_phage	1.3e-219	97.9
WP_000240645.1\|1203521_1205138_-	chaperonin GroEL	A0A240F779	uncultured_virus	3.4e-157	54.7
WP_000917289.1\|1205213_1205498_-	co-chaperone GroES	A0A221S386	uncultured_virus	4.7e-14	46.2
WP_000197635.1\|1205672_1206416_+\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA
1209781:1209796	attR	NA	NA	NA	NA

DBSCAN-SWA_91

1212605 : 1226450

uncultured_Caudovirales_phage(16.67%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000688492.1\|1212605_1213322_+	response regulator transcription factor	A0A2H4J4Z6	uncultured_Caudovirales_phage	2.3e-25	32.6
WP_001790167.1\|1213393_1213501_+	hypothetical protein	NA	NA	NA	NA
WP_001253312.1\|1213688_1214648_-	carbohydrate kinase	NA	NA	NA	NA
WP_000141414.1\|1214644_1216129_-	sucrose-6-phosphate hydrolase	S6ATV4	Bacillus_phage	4.0e-19	25.6
WP_000790330.1\|1216277_1217228_-	LacI family transcriptional regulator	NA	NA	NA	NA
WP_001052270.1\|1217410_1218661_-	ammonium transporter	H8ZJB2	Ostreococcus_tauri_virus	4.5e-40	31.2
WP_000581077.1\|1218868_1219093_-	sulfurtransferase TusA family protein	NA	NA	NA	NA
WP_072353927.1\|1219152_1220181_-	YeeE/YedE family protein	NA	NA	NA	NA
WP_001283612.1\|1220535_1221171_-	redox-sensing transcriptional repressor Rex	NA	NA	NA	NA
WP_000602074.1\|1221423_1223352_+	ABC-F type ribosomal protection protein	A0A2K9L0W2	Tupanvirus	2.4e-53	30.4
WP_001790685.1\|1223495_1223624_-	hypothetical protein	NA	NA	NA	NA
WP_000106330.1\|1223712_1225323_+	MutS family DNA mismatch repair protein	A0A0N9R0S5	Chrysochromulina_ericina_virus	3.3e-19	26.9
WP_000159034.1\|1225424_1226450_-\|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	A0A0R6PI74	Moraxella_phage	6.9e-63	40.9

DBSCAN-SWA_92

1230210 : 1234934

Yellowstone_lake_phycodnavirus(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000047820.1\|1230210_1231980_+	biosynthetic-type acetolactate synthase large subunit	A0A0P0YLY7	Yellowstone_lake_phycodnavirus	5.3e-63	30.1
WP_000196911.1\|1231979_1232234_+	ACT domain-containing protein	NA	NA	NA	NA
WP_000214557.1\|1232370_1233375_+	ketol-acid reductoisomerase	NA	NA	NA	NA
WP_000094576.1\|1233404_1234934_+	2-isopropylmalate synthase	E5EQ69	Micromonas_sp._RCC1109_virus	5.5e-08	28.1

DBSCAN-SWA_93

1248616 : 1252001

Bacillus_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001041103.1\|1248616_1249387_-	RNA polymerase sigma factor SigB	A0A0A0RNH9	Bacillus_phage	1.3e-21	34.9
WP_011447044.1\|1249361_1249871_-	anti-sigma B factor RsbW	NA	NA	NA	NA
WP_001052491.1\|1249842_1250169_-	anti-sigma factor antagonist	NA	NA	NA	NA
WP_000390829.1\|1250287_1251289_-	PP2C family protein-serine/threonine phosphatase	NA	NA	NA	NA
WP_000621175.1\|1251638_1252001_-	type II toxin-antitoxin system PemK/MazF family toxin	Q332J9	Clostridium_botulinum_C_phage	4.2e-07	32.8

DBSCAN-SWA_94

1257151 : 1259179

Paramecium_bursaria_Chlorella_virus(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000546584.1\|1257151_1259179_-	potassium-transporting ATPase subunit KdpB	M1HBF8	Paramecium_bursaria_Chlorella_virus	5.6e-24	23.1

DBSCAN-SWA_95

1264866 : 1266387

Diachasmimorpha_longicaudata_entomopoxvirus(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001178942.1\|1264866_1266387_-	DEAD/DEAH box helicase	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	2.0e-58	33.9

DBSCAN-SWA_96

1273587 : 1274235

Moumouvirus(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001187629.1\|1273587_1274235_+	HD domain-containing protein	H2ED17	Moumouvirus	6.1e-09	27.0

DBSCAN-SWA_97

1280405 : 1280801

Staphylococcus_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000932694.1\|1280405_1280801_-	single-stranded DNA-binding protein	A0A1J0MFK5	Staphylococcus_phage	1.3e-14	38.5

DBSCAN-SWA_98

1291204 : 1298954

Catovirus(25.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000723418.1\|1291204_1292332_-	UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing)	A0A1V0SAG5	Catovirus	1.0e-27	29.9
WP_000048712.1\|1292355_1292985_-	uracil phosphoribosyltransferase	NA	NA	NA	NA
WP_000120494.1\|1293012_1294251_-	serine hydroxymethyltransferase	A0A240F3L3	Aeromonas_phage	8.2e-103	53.0
WP_000654185.1\|1294277_1294802_-	TIGR01440 family protein	NA	NA	NA	NA
WP_000697334.1\|1294908_1295328_-	low molecular weight protein arginine phosphatase	NA	NA	NA	NA
WP_011447046.1\|1295324_1296422_-	threonylcarbamoyl-AMP synthase	A0A291ATS8	Pandoravirus	7.9e-41	35.6
WP_000248735.1\|1296454_1297291_-	peptide chain release factor N(5)-glutamine methyltransferase	NA	NA	NA	NA
WP_000460242.1\|1297277_1298354_-	peptide chain release factor 1	NA	NA	NA	NA
WP_000273356.1\|1298354_1298954_-	thymidine kinase	G3MBK1	Bacillus_virus	6.2e-32	42.9

DBSCAN-SWA_99

1306757 : 1308368

Only_Syngen_Nebraska_virus(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000159963.1\|1306757_1308368_-	CTP synthase	A0A1J0FA14	Only_Syngen_Nebraska_virus	3.5e-146	49.6

DBSCAN-SWA_100

1316306 : 1320138

Geobacillus_virus(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001242318.1\|1316306_1317608_-	pyrimidine-nucleoside phosphorylase	A0A0H3UZD4	Geobacillus_virus	2.7e-133	58.9
WP_161575705.1\|1317886_1318549_-	deoxyribose-phosphate aldolase	NA	NA	NA	NA
WP_000160304.1\|1318863_1319574_+	purine-nucleoside phosphorylase	NA	NA	NA	NA
WP_000070866.1\|1319694_1320138_-	DNA starvation/stationary phase protection protein	A0A0A7RTZ1	Clostridium_phage	5.6e-38	53.7

DBSCAN-SWA_101

1332801 : 1335621

Bacillus_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000908177.1\|1332801_1333584_-	ABC transporter ATP-binding protein	W8CYL7	Bacillus_phage	1.7e-08	32.1
WP_000334465.1\|1333815_1335621_-	glutamine--fructose-6-phosphate transaminase (isomerizing)	M1H1Z3	Paramecium_bursaria_Chlorella_virus	2.0e-97	38.6

DBSCAN-SWA_102

1341877 : 1349314

Staphylococcus_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_161575706.1\|1341877_1349314_-	DUF1542 domain-containing protein	A0A2H4PQU6	Staphylococcus_phage	1.5e-18	23.5

DBSCAN-SWA_103

1352903 : 1353812

Klosneuvirus(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000167867.1\|1352903_1353812_-	arginase	A0A1V0SJM8	Klosneuvirus	3.2e-27	32.0

DBSCAN-SWA_104

1371341 : 1372310

uncultured_Caudovirales_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000989091.1\|1371341_1372310_-	iron chelate uptake ABC transporter family permease subunit	A0A2H4IY97	uncultured_Caudovirales_phage	1.3e-15	28.8

DBSCAN-SWA_105

1384468 : 1386031

Vibrio_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_161575708.1\|1384468_1386031_-	BCCT family transporter	A0A2I7QNT1	Vibrio_phage	2.1e-18	24.8

DBSCAN-SWA_106

1389991 : 1391404

Pandoravirus(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000169220.1\|1389991_1391404_-	6-phospho-beta-galactosidase	A0A0B5JD41	Pandoravirus	5.0e-48	28.9

DBSCAN-SWA_107

1397725 : 1400820

Orpheovirus(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001549592.1\|1397725_1398466_+	NAD-dependent protein deacylase	A0A2I2L319	Orpheovirus	7.3e-14	29.4
WP_001791678.1\|1398502_1398664_+	hypothetical protein	NA	NA	NA	NA
WP_000333465.1\|1398756_1399365_-	DUF3885 domain-containing protein	NA	NA	NA	NA
WP_001549596.1\|1399626_1399752_-	hypothetical protein	NA	NA	NA	NA
WP_001015500.1\|1399971_1400820_-	aldo/keto reductase	A0A2H4PQR8	Staphylococcus_phage	2.0e-44	39.2

DBSCAN-SWA_108

1404196 : 1413425

Clostridium_phage(33.33%)

protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001044432.1\|1404196_1405051_-	M23 family metallopeptidase	E5G070	Clostridium_phage	3.4e-07	41.4
WP_000044363.1\|1405261_1406077_-	HAD-IIB family hydrolase	NA	NA	NA	NA
WP_001549607.1\|1406370_1406796_+	MAP domain-containing protein	NA	NA	NA	NA
WP_000186134.1\|1407159_1407864_-	acetolactate decarboxylase	NA	NA	NA	NA
WP_000130156.1\|1407900_1409565_-	acetolactate synthase AlsS	A0A0P0YLY7	Yellowstone_lake_phycodnavirus	4.7e-45	25.9
WP_001797632.1\|1409797_1410037_+	hypothetical protein	NA	NA	NA	NA
WP_000655244.1\|1410018_1410201_-	hypothetical protein	NA	NA	NA	NA
WP_001570390.1\|1410816_1412160_-	hypothetical protein	NA	NA	NA	NA
WP_000402465.1\|1412288_1413425_-\|protease	ATP-dependent Clp protease ATP-binding subunit	A0A2I7SAX5	Vibrio_phage	5.4e-08	27.0

DBSCAN-SWA_109

1418854 : 1420521

Staphylococcus_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000155386.1\|1418854_1419715_-	energy-coupling factor transporter ATPase	A0A2H4PQG7	Staphylococcus_phage	9.7e-10	23.9
WP_000389662.1\|1419711_1420521_-	energy-coupling factor transporter ATPase	W6JKT0	Anomala_cuprea_entomopoxvirus	2.2e-19	30.0

DBSCAN-SWA_110

1443984 : 1447152

Leptospira_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000592303.1\|1443984_1447152_-	efflux RND transporter permease subunit	S5VTK5	Leptospira_phage	6.2e-62	21.8

DBSCAN-SWA_111

1459066 : 1459672

Pithovirus(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000913019.1\|1459066_1459672_-	ATP-binding cassette domain-containing protein	W5SAS9	Pithovirus	3.8e-13	30.6

DBSCAN-SWA_112

1478649 : 1479453

Staphylococcus_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000717381.1\|1478649_1479453_+	CHAP domain-containing protein	A0A2R3ZXQ4	Staphylococcus_phage	9.3e-07	41.3

DBSCAN-SWA_113

1483369 : 1487350

Staphylococcus_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000737705.1\|1483369_1483870_+	CHAP domain-containing protein	A0A2R3ZXQ4	Staphylococcus_phage	2.0e-07	39.3
WP_000417016.1\|1484231_1485185_+	2-hydroxyacid dehydrogenase	A0A1V0SBV6	Catovirus	2.9e-31	28.9
WP_000684141.1\|1485276_1486401_-	NAD(P)-binding protein	A0A2K9L3K5	Tupanvirus	5.5e-13	22.8
WP_161575776.1\|1486711_1487350_-	autolysin	A0A1W6JQU5	Staphylococcus_phage	2.6e-36	48.1

DBSCAN-SWA_114

1500914 : 1501550

Paramecium_bursaria_Chlorella_virus(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000285450.1\|1500914_1501550_-	HAD family hydrolase	A7J6N1	Paramecium_bursaria_Chlorella_virus	1.6e-09	27.1

DBSCAN-SWA_115

1509428 : 1510310

Diadromus_pulchellus_ascovirus(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000730043.1\|1509428_1510310_-	SDR family oxidoreductase	F2NZ40	Diadromus_pulchellus_ascovirus	2.2e-62	46.3

DBSCAN-SWA_116

1516123 : 1516543

Bacillus_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000920239.1\|1516123_1516543_+	FosB1/FosB3 family fosfomycin resistance bacillithiol transferase	Q2LI91	Bacillus_phage	2.6e-37	61.9

DBSCAN-SWA_117

1523915 : 1524815

Brazilian_cedratvirus(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000524836.1\|1523915_1524815_-	ABC transporter ATP-binding protein	A0A2R8FG22	Brazilian_cedratvirus	4.2e-16	29.2

DBSCAN-SWA_118

1536936 : 1538145

Salmonella_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000999131.1\|1536936_1538145_-	multidrug effflux MFS transporter	S4TR35	Salmonella_phage	3.9e-33	26.3

DBSCAN-SWA_119

1542724 : 1546621

Planktothrix_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001229911.1\|1542724_1543390_-	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	1.2e-36	38.8
WP_000761395.1\|1543389_1544445_-	ABC transporter permease	NA	NA	NA	NA
WP_000249497.1\|1544580_1545255_+	DNA-binding heme response regulator HssR	W8CYM9	Bacillus_phage	3.6e-52	45.2
WP_000477329.1\|1545247_1546621_+	heme sensor histidine kinase HssS	A0A1V0SGX0	Hokovirus	1.3e-13	29.8

DBSCAN-SWA_120

1556481 : 1557516

Bacillus_virus(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000655971.1\|1556481_1557516_-	NAD(P)/FAD-dependent oxidoreductase	G3MA85	Bacillus_virus	5.8e-17	26.6

DBSCAN-SWA_121

1578997 : 1580557

Escherichia_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000692645.1\|1578997_1580557_-	nitrate reductase subunit beta	A0A077SL61	Escherichia_phage	4.4e-21	46.8

DBSCAN-SWA_122

1597205 : 1597937

Bacillus_virus(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000615461.1\|1597205_1597937_-	amino acid ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	4.1e-25	34.7

DBSCAN-SWA_123

1605758 : 1611530

Staphylococcus_phage(75.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000594519.1\|1605758_1606688_+	bi-component gamma-hemolysin HlgAB subunit A	A0A2H4PQI5	Staphylococcus_phage	3.2e-120	71.1
WP_000916713.1\|1607255_1608203_+	bi-component gamma-hemolysin HlgCB subunit C	A0A2I6PER8	Staphylococcus_phage	1.2e-138	77.1
WP_000783428.1\|1608204_1609182_+	bi-component gamma-hemolysin HlgAB/HlgCB subunit B	A0A2H4PQH7	Staphylococcus_phage	7.1e-142	76.2
WP_000200948.1\|1609233_1609701_-	QueT transporter family protein	NA	NA	NA	NA
WP_000286875.1\|1609711_1610404_-	6-carboxyhexanoate--CoA ligase	NA	NA	NA	NA
WP_000671751.1\|1610414_1611530_-	pyridoxal phosphate-dependent aminotransferase family protein	V5LQ39	Emiliania_huxleyi_virus	1.6e-20	24.7

DBSCAN-SWA_124

1614990 : 1621177

Bacillus_phage(66.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000486494.1\|1614990_1616724_-	ABC transporter ATP-binding protein	W8CYL7	Bacillus_phage	9.0e-31	25.7
WP_001064838.1\|1616748_1618512_-	ABC transporter ATP-binding protein	W8CYL7	Bacillus_phage	1.5e-36	24.9
WP_000482650.1\|1619139_1619247_-	type I toxin-antitoxin system Fst family toxin	NA	NA	NA	NA
WP_000779358.1\|1619380_1619767_-	GtrA family protein	NA	NA	NA	NA
WP_001176863.1\|1620034_1621177_+	glycerate kinase	W6LM47	Streptococcus_phage	5.3e-56	44.3

DBSCAN-SWA_125

1638904 : 1640763

Bacillus_virus(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000569120.1\|1638904_1639540_-	ABC transporter permease	G3M9Y4	Bacillus_virus	9.0e-05	26.2
WP_000948981.1\|1639536_1640763_-	ABC transporter ATP-binding protein	Q6GZ03	Mycoplasma_phage	6.6e-20	50.5

DBSCAN-SWA_126

1644456 : 1648885

Pandoravirus(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000700921.1\|1644456_1645809_+	carboxylesterase/lipase family protein	A0A0B5J865	Pandoravirus	2.5e-12	34.2
WP_001802848.1\|1645870_1647049_-	MFS transporter	NA	NA	NA	NA
WP_000072147.1\|1647453_1648230_-	iron export ABC transporter permease subunit FetB	NA	NA	NA	NA
WP_000923520.1\|1648222_1648885_-	ATP-binding cassette domain-containing protein	F2Y2R6	Organic_Lake_phycodnavirus	6.5e-22	32.2

DBSCAN-SWA_127

1656017 : 1657575

Bacillus_virus(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000590517.1\|1656017_1656767_-	ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	3.1e-20	30.8
WP_000173869.1\|1656759_1657575_-	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	1.8e-13	30.3

DBSCAN-SWA_128

1670936 : 1671632

Bacillus_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000217466.1\|1670936_1671632_-	SDR family oxidoreductase	W8CYX9	Bacillus_phage	8.6e-09	36.5

DBSCAN-SWA_129

1678455 : 1683636

Bacillus_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000088722.1\|1678455_1681317_-	DUF3427 domain-containing protein	Q5YA94	Bacillus_phage	2.4e-28	27.9
WP_000755954.1\|1681318_1681711_-	(deoxy)nucleoside triphosphate pyrophosphohydrolase	NA	NA	NA	NA
WP_001795457.1\|1681827_1683636_+	phospho-sugar mutase	A0A1X9I671	Streptococcus_phage	1.9e-95	38.1

DBSCAN-SWA_130

1691435 : 1692302

Bacillus_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000721336.1\|1691435_1692302_-	UTP--glucose-1-phosphate uridylyltransferase GalU	A0A127AW70	Bacillus_phage	1.3e-78	52.6

DBSCAN-SWA_131

1712684 : 1713380

Staphylococcus_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000382904.1\|1712684_1713380_+	ATP-binding cassette domain-containing protein	A0A2H4PQG7	Staphylococcus_phage	3.0e-38	38.0

DBSCAN-SWA_132

1722660 : 1723653

Acanthocystis_turfacea_Chlorella_virus(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000161536.1\|1722660_1723653_+	D-lactate dehydrogenase	M1HYB0	Acanthocystis_turfacea_Chlorella_virus	1.1e-36	31.5

DBSCAN-SWA_133

1733239 : 1739623

Powai_lake_megavirus(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001228162.1\|1733239_1734208_-	alpha/beta hydrolase	A0A167RJ59	Powai_lake_megavirus	5.2e-12	26.5
WP_000240662.1\|1734340_1734685_-	thioredoxin family protein	NA	NA	NA	NA
WP_000206033.1\|1734726_1735137_-	acyl-CoA thioesterase	NA	NA	NA	NA
WP_000473675.1\|1735516_1737583_-	PTS transporter subunit EIIC	A0A2I7SAJ6	Vibrio_phage	8.3e-07	43.3
WP_161575718.1\|1737883_1739623_-	pyruvate oxidase	A0A0P0YLY7	Yellowstone_lake_phycodnavirus	2.7e-35	24.3

DBSCAN-SWA_134

1747505 : 1750541

Streptococcus_phage(50.0%)

protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_161575720.1\|1747505_1748027_-	methylated-DNA--[protein]-cysteine S-methyltransferase	M1PFU9	Streptococcus_phage	2.0e-26	41.1
WP_001058981.1\|1748435_1750541_+\|protease	ATP-dependent Clp protease ATP-binding subunit	H6X3M6	Enterobacteria_phage	3.1e-118	38.5

DBSCAN-SWA_135

1759781 : 1763764

uncultured_virus(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000024127.1\|1759781_1762190_+	copper-translocating P-type ATPase	A0A218MNH6	uncultured_virus	4.9e-128	41.0
WP_000076661.1\|1762469_1762676_+	copper chaperone CopZ	NA	NA	NA	NA
WP_000161358.1\|1762765_1763764_-	D-lactate dehydrogenase	M1H502	Paramecium_bursaria_Chlorella_virus	1.2e-35	33.0

DBSCAN-SWA_136

1772197 : 1775986

Salmonella_virus(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000379821.1\|1772197_1774009_-	acetyltransferase	A0A1R3Y5Q6	Salmonella_virus	1.3e-35	31.5
WP_000996735.1\|1774520_1775009_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_000751267.1\|1775284_1775986_-	lytic transglycosylase IsaA	Q4Z8Z7	Staphylococcus_phage	4.0e-38	46.4

DBSCAN-SWA_137

1804122 : 1814236

Klosneuvirus(50.0%)

holin

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000030057.1\|1804122_1805460_-	aspartate aminotransferase family protein	A0A1V0SKB7	Klosneuvirus	1.0e-18	26.7
WP_001237629.1\|1805717_1806134_+	hypothetical protein	NA	NA	NA	NA
WP_001031413.1\|1806256_1807147_+	fructose bisphosphate aldolase	A0A0K0KVJ8	Prochlorococcus_phage	1.0e-06	28.6
WP_001130051.1\|1807339_1808836_-	malate dehydrogenase (quinone)	NA	NA	NA	NA
WP_001791775.1\|1809131_1809461_+	hypothetical protein	NA	NA	NA	NA
WP_001172340.1\|1809520_1811119_-	AMP-binding protein	A0A2H4PQU7	Staphylococcus_phage	5.3e-78	36.8
WP_000708242.1\|1811312_1811756_-	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA
WP_048665251.1\|1812036_1812249_-	hypothetical protein	NA	NA	NA	NA
WP_000066521.1\|1812526_1814236_-\|holin	choline dehydrogenase	A0A1V0SI18	Klosneuvirus	3.8e-58	32.3

DBSCAN-SWA_138

1820081 : 1822465

Enterococcus_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000601724.1\|1820081_1820618_-	anaerobic ribonucleoside-triphosphate reductase activating protein	A0A288TZV3	Enterococcus_phage	8.6e-41	49.4
WP_001071717.1\|1820614_1822465_-	anaerobic ribonucleoside-triphosphate reductase	A0A0C5KKX3	Enterococcus_phage	1.2e-235	64.3

DBSCAN-SWA_139

1827517 : 1828015

Canarypox_virus(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001065268.1\|1827517_1828015_-	glutathione peroxidase	Q6VZR0	Canarypox_virus	1.8e-21	33.1

DBSCAN-SWA_140

1831435 : 1833186

Planktothrix_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000923760.1\|1831435_1832191_-	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	3.0e-31	37.9
WP_000143419.1\|1832298_1833186_-	sensor histidine kinase	Q8QNA2	Ectocarpus_siliculosus_virus	2.5e-05	22.5

DBSCAN-SWA_141

1858906 : 1860766

Enterococcus_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_161575724.1\|1858906_1860766_+	amidase domain-containing protein	A0A249Y0X5	Enterococcus_phage	9.7e-15	37.3

DBSCAN-SWA_142

1886597 : 1887290

Streptococcus_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000185864.1\|1886597_1887290_-	polysaccharide biosynthesis tyrosine autokinase	A0A1X9I5D6	Streptococcus_phage	1.7e-28	38.0

DBSCAN-SWA_143

1899695 : 1900709

Faustovirus(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000639183.1\|1899695_1900709_-	histidinol-phosphate aminotransferase family protein	A0A1X7QHI1	Faustovirus	2.1e-08	22.2

DBSCAN-SWA_144

1906338 : 1908051

Planktothrix_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000138655.1\|1906338_1908051_-	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	1.4e-20	32.3

DBSCAN-SWA_145

1922308 : 1928879

Planktothrix_phage(25.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_161575728.1\|1922308_1923067_+	peptide resistance ABC transporter ATP-binding subunit VraD	G9BWD6	Planktothrix_phage	1.2e-35	39.5
WP_000143650.1\|1923056_1924937_+	peptide resistance ABC transporter permease subunit VraE	NA	NA	NA	NA
WP_000672039.1\|1925029_1925221_+	peptide resistance ABC transporter activity modulator VraH	NA	NA	NA	NA
WP_001059079.1\|1925613_1925814_+	cold-shock protein	Q9AZD3	Lactococcus_phage	3.4e-19	69.8
WP_001054118.1\|1925940_1926510_-	helix-turn-helix domain-containing protein	D2XQ11	Bacillus_virus	6.2e-05	33.3
WP_000779136.1\|1926769_1927165_-	DUF3147 family protein	NA	NA	NA	NA
WP_000491382.1\|1927232_1927586_-	DUF3147 family protein	NA	NA	NA	NA
WP_000742837.1\|1928039_1928879_-	nucleoid occlusion protein	A0A2K9V477	Faecalibacterium_phage	2.2e-06	23.8

DBSCAN-SWA_146

1938961 : 1948000

Bacillus_virus(50.0%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000255586.1\|1938961_1940896_+	DNA topoisomerase (ATP-hydrolyzing) subunit B	G3M9Z3	Bacillus_virus	5.7e-143	44.9
WP_000819084.1\|1940932_1943596_+	DNA gyrase subunit A	G3M9Z5	Bacillus_virus	2.7e-119	35.9
WP_000449218.1\|1943682_1944495_-	NAD(P)H-hydrate dehydratase	NA	NA	NA	NA
WP_000177464.1\|1944820_1946335_+	histidine ammonia-lyase	A0A1V0S940	Catovirus	6.8e-91	38.6
WP_000884334.1\|1946713_1948000_+\|tRNA	serine--tRNA ligase	A0A1B1IVT2	uncultured_Mediterranean_phage	2.7e-88	51.2

DBSCAN-SWA_147

1954687 : 1964699

Bacillus_phage(40.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000375651.1\|1954687_1956088_+	replicative DNA helicase	A0A1P8VVQ6	Streptococcus_phage	2.4e-111	48.4
WP_000095327.1\|1956365_1957649_+	adenylosuccinate synthase	L7Y4J5	Megavirus	2.3e-68	34.6
WP_000101976.1\|1958852_1959554_+	response regulator transcription factor	W8CYM9	Bacillus_phage	3.5e-42	39.2
WP_000871607.1\|1959566_1961393_+	cell wall metabolism sensor histidine kinase WalK	W8CYF6	Bacillus_phage	1.6e-30	31.3
WP_001060131.1\|1961385_1962720_+	hypothetical protein	NA	NA	NA	NA
WP_001104172.1\|1962720_1963509_+	hypothetical protein	NA	NA	NA	NA
WP_000088648.1\|1963898_1964699_+	MBL fold metallo-hydrolase	A0A0C5AJ83	Bacteriophage	4.6e-38	35.9

DBSCAN-SWA_148

1968434 : 1974758

Bacillus_phage(66.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_031903863.1\|1968434_1969679_+	restriction endonuclease subunit S	A0A2H4PQP5	Staphylococcus_phage	1.2e-32	31.0
WP_031903864.1\|1970021_1970531_-	DUF1643 domain-containing protein	NA	NA	NA	NA
WP_031903865.1\|1970545_1970857_-	DUF960 domain-containing protein	NA	NA	NA	NA
WP_031903866.1\|1970943_1971294_-	hypothetical protein	NA	NA	NA	NA
WP_061657937.1\|1971759_1973388_-	recombinase family protein	A0A0S2SXR4	Bacillus_phage	9.3e-46	30.7
WP_161575730.1\|1973408_1974758_-	recombinase family protein	Q9T200	Bacillus_phage	2.2e-16	25.7

DBSCAN-SWA_149

1979565 : 1980408

Thermus_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000114516.1\|1979565_1980408_+	TIR domain-containing protein	S6BFN8	Thermus_phage	1.4e-34	37.6

DBSCAN-SWA_150

1990131 : 1991199

Staphylococcus_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000816129.1\|1990131_1991199_+	persulfide response sulfurtransferase CstA	A0A2H4PQR9	Staphylococcus_phage	3.5e-09	41.5

DBSCAN-SWA_151

2028042 : 2032252

uncultured_Caudovirales_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000136636.1\|2028042_2029041_-	staphyloferrin B ABC transporter permease subunit SirC	A0A2H4IY97	uncultured_Caudovirales_phage	1.2e-14	27.5
WP_000924997.1\|2029037_2030033_-	staphyloferrin B ABC transporter permease subunit SirB	NA	NA	NA	NA
WP_001045111.1\|2030048_2031041_-	staphyloferrin B ABC transporter substrate-binding protein SirA	NA	NA	NA	NA
WP_000570808.1\|2031271_2032252_+	2,3-diaminopropionate biosynthesis protein SbnA	A0A1W6JHY1	Lactococcus_phage	2.1e-40	35.6

DBSCAN-SWA_152

2040518 : 2041721

Tupanvirus(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001223700.1\|2040518_2041721_+	staphyloferrin B biosynthesis decarboxylase SbnH	A0A2K9L4I2	Tupanvirus	1.1e-08	20.8

DBSCAN-SWA_153

2045091 : 2046072

Catovirus(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001789408.1\|2045091_2046072_+	NAD-dependent epimerase/dehydratase family protein	A0A1V0SAI6	Catovirus	1.0e-47	37.0

DBSCAN-SWA_154

2051009 : 2051609

Bacillus_thuringiensis_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000874681.1\|2051009_2051609_+	superoxide dismutase	Q56AR7	Bacillus_thuringiensis_phage	7.6e-54	50.2

DBSCAN-SWA_155

2059644 : 2060418

Staphylococcus_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000078092.1\|2059644_2060418_-	phosphonate ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	3.8e-13	26.1

DBSCAN-SWA_156

2071699 : 2078264

Catovirus(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000037332.1\|2071699_2072386_+	tyrosine-protein kinase	A0A1X9I5D6	Streptococcus_phage	3.7e-28	36.1
WP_000565302.1\|2072388_2073153_+	tyrosine-protein phosphatase	NA	NA	NA	NA
WP_161575735.1\|2073172_2074996_+	polysaccharide biosynthesis protein	A0A1V0SAI8	Catovirus	4.0e-29	29.1
WP_000459054.1\|2074985_2076014_+	polysaccharide biosynthesis protein	A0A1V0SAI8	Catovirus	3.3e-41	35.0
WP_001028293.1\|2076026_2077136_+	capsular polysaccharide biosynthesis protein CapF	NA	NA	NA	NA
WP_000413171.1\|2077139_2078264_+	UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing)	A0A1V0SJE0	Klosneuvirus	6.7e-128	59.6

DBSCAN-SWA_157

2085099 : 2087584

Bacillus_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000779497.1\|2085099_2086362_+	nucleotide sugar dehydrogenase	A0A127AXI2	Bacillus_phage	6.6e-23	26.0
WP_000723454.1\|2086438_2087584_+	UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing)	A0A1V0SAG5	Catovirus	2.4e-24	26.4

DBSCAN-SWA_158

2090924 : 2093922

Indivirus(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001013484.1\|2090924_2091884_+	cation transporter	A0A1V0SED0	Indivirus	1.2e-11	34.2
WP_000356963.1\|2091945_2092149_-	hypothetical protein	NA	NA	NA	NA
WP_000171919.1\|2092327_2092840_+	DUF4242 domain-containing protein	NA	NA	NA	NA
WP_000590849.1\|2093181_2093922_+	ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	6.5e-39	41.1

DBSCAN-SWA_159

2097460 : 2107744

Catovirus(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000706137.1\|2097460_2098486_+	NAD-dependent formate dehydrogenase	A0A1V0SBV6	Catovirus	2.9e-29	33.9
WP_000826862.1\|2098871_2100122_+	MFS transporter	NA	NA	NA	NA
WP_000605282.1\|2100568_2107744_+	non-ribosomal peptide synthetase	A0A2K9KZV5	Tupanvirus	1.0e-67	29.5

DBSCAN-SWA_160

2112580 : 2113765

Klosneuvirus(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_050956505.1\|2112580_2113765_-	ornithine--oxo-acid transaminase	A0A1V0SKB7	Klosneuvirus	1.6e-34	29.2

DBSCAN-SWA_161

2131924 : 2133517

Planktothrix_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_050956503.1\|2131924_2133517_-	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	2.4e-22	33.6

DBSCAN-SWA_162

2142052 : 2144111

Pontimonas_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000166917.1\|2142052_2142631_+	M23 family metallopeptidase	A0A2K9VGT1	Pontimonas_phage	9.7e-14	39.4
WP_000818914.1\|2143013_2144111_+	sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC	G9BWD6	Planktothrix_phage	1.4e-24	35.6

DBSCAN-SWA_163

2154321 : 2159680

Enterobacteria_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000127982.1\|2154321_2155878_-	sensor histidine kinase	Q9EYF3	Enterobacteria_phage	5.8e-13	27.2
WP_000837105.1\|2155874_2156843_-	extracellular solute-binding protein	NA	NA	NA	NA
WP_000894660.1\|2157430_2159680_+	formate C-acetyltransferase	A0A2P0VNR5	Tetraselmis_virus	1.7e-186	45.1

DBSCAN-SWA_164

2170751 : 2172257

Staphylococcus_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001008401.1\|2170751_2172257_-	acyl--CoA ligase	A0A2H4PQM9	Staphylococcus_phage	3.5e-39	25.9

DBSCAN-SWA_165

2181132 : 2182662

Vibrio_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000838204.1\|2181132_2182662_-	PTS transporter subunit EIIC	A0A2I7SAJ6	Vibrio_phage	5.3e-11	52.0

DBSCAN-SWA_166

2189877 : 2190921

Synechococcus_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000645604.1\|2189877_2190921_+	galactitol-1-phosphate 5-dehydrogenase	E3SJ82	Synechococcus_phage	4.6e-14	24.6

DBSCAN-SWA_167

2200248 : 2204788

Catovirus(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000975357.1\|2200248_2201973_+	glycosyltransferase family 2 protein	A0A1V0SAH6	Catovirus	2.1e-11	37.4
WP_000608826.1\|2202112_2202787_+	iron-sulfur cluster repair di-iron protein ScdA	NA	NA	NA	NA
WP_000925394.1\|2203048_2204788_+	sensor histidine kinase	Q9EYF3	Enterobacteria_phage	1.5e-62	31.5

DBSCAN-SWA_168

2208548 : 2209985

Pandoravirus(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000163988.1\|2208548_2209985_+	6-phospho-beta-glucosidase	A0A0B5JD41	Pandoravirus	3.7e-30	25.8

DBSCAN-SWA_169

2219274 : 2220936

Arthrobacter_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000736798.1\|2219274_2220225_+	glycine-glycine endopeptidase LytM	V5R8R0	Arthrobacter_phage	1.5e-16	42.7
WP_000570071.1\|2220276_2220936_-	ABC transporter ATP-binding protein	Q9EMR9	Amsacta_moorei_entomopoxvirus	7.6e-23	37.2

DBSCAN-SWA_170

2232899 : 2237339

Mycobacterium_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_161575738.1\|2232899_2237339_+	type VII secretion protein EssC	V5UPA0	Mycobacterium_phage	8.2e-28	24.3

DBSCAN-SWA_171

2256525 : 2257203

Planktothrix_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000911019.1\|2256525_2257203_+	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	9.2e-32	38.9

DBSCAN-SWA_172

2271376 : 2313512

Staphylococcus_phage(72.31%)

integrase,terminase,plate,tail,capsid,portal,head,holin

attL 2271266:2271283|attR 2314247:2314264

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
2271266:2271283	attL	NA	NA	NA	NA
WP_117434768.1\|2271376_2272582_-\|integrase	site-specific integrase	A7YGM7	Staphylococcus_virus	4.2e-221	99.3
WP_117434767.1\|2272756_2273296_-	type II toxin-antitoxin system PemK/MazF family toxin	U5U4R0	Staphylococcus_phage	1.5e-13	32.4
WP_161575741.1\|2273435_2273603_-	hypothetical protein	Q4ZDJ4	Staphylococcus_virus	2.5e-23	96.4
WP_161575742.1\|2273802_2274573_-	helix-turn-helix domain-containing protein	A0A1P8L6G7	Staphylococcus_phage	1.4e-137	97.7
WP_000338187.1\|2274732_2274954_+	DUF739 family protein	A0A1X9H090	Staphylococcus_phage	7.6e-36	100.0
WP_000435355.1\|2274977_2275421_+	hypothetical protein	A0A0H3U2S6	Staphylococcus_phage	2.0e-75	99.3
WP_000939502.1\|2275435_2275579_+	hypothetical protein	Q4ZAL7	Staphylococcus_virus	1.9e-16	100.0
WP_000642493.1\|2275568_2275778_-	hypothetical protein	W5R9J5	Staphylococcus_phage	5.9e-30	98.6
WP_001572437.1\|2275834_2276578_+	phage antirepressor protein	A0A0E3T9K5	Staphylococcus_phage	8.9e-137	99.2
WP_103183909.1\|2276602_2276818_+	hypothetical protein	E9LT76	Staphylococcus_phage	1.0e-29	91.5
WP_001652266.1\|2276773_2277019_-	hypothetical protein	E9LT77	Staphylococcus_phage	2.9e-36	95.1
WP_000066027.1\|2277198_2277360_+	DUF1270 family protein	D2JGJ6	Staphylococcus_phage	2.1e-19	96.2
WP_000291076.1\|2277453_2277714_+	DUF1108 family protein	Q4ZDR5	Staphylococcus_virus	5.8e-43	98.8
WP_000815403.1\|2277723_2277945_+	DUF2483 domain-containing protein	A0A1X9H047	Staphylococcus_phage	1.2e-33	100.0
WP_029052133.1\|2277937_2278717_+	ATP-binding protein	A0A1W6JPW0	Staphylococcus_phage	1.5e-139	98.1
WP_000704707.1\|2278748_2279300_+	hypothetical protein	Q4ZBM4	Staphylococcus_phage	1.7e-100	99.5
WP_161575743.1\|2279312_2279984_+	hypothetical protein	A0A1X9H044	Staphylococcus_phage	2.4e-125	98.6
WP_016028252.1\|2280093_2280753_-	hypothetical protein	E0Y3Q0	Staphylococcus_virus	1.4e-120	100.0
WP_000190224.1\|2280798_2281569_+	hypothetical protein	W5R8N2	Staphylococcus_phage	1.4e-116	100.0
WP_038804410.1\|2281578_2282358_+	ATP-binding protein	Q4ZBL6	Staphylococcus_phage	1.6e-144	99.2
WP_000256597.1\|2282351_2282510_+	hypothetical protein	Q4ZBL5	Staphylococcus_phage	3.4e-22	100.0
WP_001123679.1\|2282522_2282744_+	DUF3269 family protein	Q9G021	Staphylococcus_phage	3.8e-35	98.6
WP_000401953.1\|2282753_2283161_+	RusA family crossover junction endodeoxyribonuclease	A9CR74	Staphylococcus_phage	1.0e-73	100.0
WP_001187259.1\|2283160_2283346_+	DUF3113 family protein	A0A1X9H053	Staphylococcus_phage	3.5e-26	95.1
WP_000907341.1\|2283346_2283964_+	hypothetical protein	A0A0H3U4U9	Staphylococcus_phage	1.2e-83	99.5
WP_001126831.1\|2283964_2284213_+	hypothetical protein	S4SVD3	Staphylococcus_phage	1.6e-42	98.8
WP_000695764.1\|2284225_2284630_+	hypothetical protein	S4V6D5	Staphylococcus_phage	1.3e-60	90.3
WP_000979209.1\|2284626_2284974_+	hypothetical protein	D2JGL4	Staphylococcus_phage	5.9e-59	100.0
WP_117225835.1\|2284970_2285279_+	hypothetical protein	Q6R826	Staphylococcus_virus	1.0e-46	93.1
WP_001065089.1\|2285271_2285520_+	DUF1024 family protein	A9CR86	Staphylococcus_phage	2.7e-37	98.8
WP_161575744.1\|2285512_2286046_+	dUTP pyrophosphatase	A0A059T5A7	Staphylococcus_phage	3.7e-92	96.6
WP_000120374.1\|2286082_2286328_+	hypothetical protein	A9CR89	Staphylococcus_phage	6.5e-28	100.0
WP_000195769.1\|2286324_2286531_+	DUF1381 domain-containing protein	A0A1W6JPY0	Staphylococcus_phage	1.6e-19	97.1
WP_001072794.1\|2286527_2286731_+	hypothetical protein	B2ZYX5	Staphylococcus_phage	8.8e-31	98.5
WP_001796216.1\|2286723_2286939_+	hypothetical protein	A0A0H3U4U1	Staphylococcus_phage	1.3e-16	73.2
WP_000990005.1\|2286939_2287086_+	hypothetical protein	B2ZYX7	Staphylococcus_phage	2.2e-15	100.0
WP_024273316.1\|2287100_2287520_+	transcriptional regulator	I1W651	Staphylococcus_phage	2.0e-69	97.8
WP_001003271.1\|2287705_2288146_+\|terminase	terminase small subunit	I1W650	Staphylococcus_phage	4.8e-74	100.0
WP_000169945.1\|2288132_2289410_+\|terminase	PBSX family phage terminase large subunit	S4V685	Staphylococcus_phage	1.3e-249	100.0
WP_001652961.1\|2289420_2290956_+\|portal	phage portal protein	Q4ZDN2	Staphylococcus_virus	4.5e-292	100.0
WP_161575745.1\|2290962_2291958_+\|head	phage head morphogenesis protein	E0Y3K7	Staphylococcus_virus	1.4e-182	99.1
WP_000072205.1\|2292030_2292201_+	hypothetical protein	Q4ZDN0	Staphylococcus_virus	4.3e-23	100.0
WP_000392141.1\|2292309_2292930_+	DUF4355 domain-containing protein	Q4ZDM9	Staphylococcus_virus	1.1e-63	100.0
WP_161575746.1\|2292943_2293918_+\|capsid	phage major capsid protein	I1W645	Staphylococcus_phage	1.8e-182	99.7
WP_061821932.1\|2293939_2294227_+	hypothetical protein	S4V6D9	Staphylococcus_phage	5.2e-45	98.9
WP_000208960.1\|2294235_2294568_+\|head,tail	phage head-tail connector protein	A0A0F6N3F4	Staphylococcus_phage	5.5e-54	100.0
WP_009560319.1\|2294564_2294867_+	hypothetical protein	S4SUQ1	Staphylococcus_phage	8.8e-51	100.0
WP_001017815.1\|2294866_2295214_+	HK97 gp10 family phage protein	A0A0F6N3F5	Staphylococcus_phage	4.1e-60	100.0
WP_015977972.1\|2295225_2295609_+	hypothetical protein	Q4ZDM4	Staphylococcus_virus	2.6e-68	100.0
WP_015977970.1\|2295627_2296209_+\|tail	phage major tail protein, TP901-1 family	Q4ZDM3	Staphylococcus_virus	1.8e-105	100.0
WP_001100161.1\|2296270_2296636_+	hypothetical protein	A0A0F6N4J9	Staphylococcus_phage	3.6e-59	100.0
WP_000105584.1\|2296665_2297010_+	hypothetical protein	A0A0F6N3F7	Staphylococcus_phage	2.5e-57	100.0
WP_161575747.1\|2297026_2300491_+	hypothetical protein	Q4ZDL9	Staphylococcus_virus	1.5e-258	93.8
WP_001557971.1\|2300503_2301451_+\|tail	phage tail family protein	Q8SDT6	Staphylococcus_phage	6.1e-183	99.7
WP_031942138.1\|2301459_2303361_+	peptidase	Q4ZDD8	Staphylococcus_virus	0.0e+00	99.8
WP_001668931.1\|2303375_2305286_+	hypothetical protein	Q4ZDL3	Staphylococcus_virus	0.0e+00	100.0
WP_161575748.1\|2305285_2307109_+\|plate	phage baseplate upper protein	B1H3M3	Staphylococcus_phage	1.1e-302	94.4
WP_000705910.1\|2307108_2307486_+	DUF2977 domain-containing protein	Q9FZY7	Staphylococcus_virus	1.2e-60	100.0
WP_000782200.1\|2307489_2307663_+	XkdX family protein	A0A0F6N3L7	Staphylococcus_phage	6.6e-27	100.0
WP_000466784.1\|2307703_2308003_+	DUF2951 domain-containing protein	A0A2I6PER2	Staphylococcus_phage	2.0e-31	100.0
WP_161575749.1\|2308139_2310038_+	CHAP domain-containing protein	A0EWU7	Staphylococcus_virus	0.0e+00	99.4
WP_161575750.1\|2310050_2311289_+\|plate	BppU family phage baseplate upper protein	E0Y3M8	Staphylococcus_virus	2.3e-206	98.3
WP_000398864.1\|2311293_2311689_+	hypothetical protein	A9CRD5	Staphylococcus_phage	4.7e-68	99.2
WP_000339141.1\|2311744_2312047_+\|holin	phage holin	A0A2I6PF56	Staphylococcus_phage	3.1e-48	100.0
WP_031788419.1\|2312057_2313512_+	CHAP domain-containing protein	I1W626	Staphylococcus_phage	5.7e-289	99.8
2314247:2314264	attR	NA	NA	NA	NA

DBSCAN-SWA_173

2318415 : 2321150

Tupanvirus(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000449060.1\|2318415_2319216_+	protein-ADP-ribose hydrolase	A0A2K9L8X2	Tupanvirus	8.9e-42	43.9
WP_001191946.1\|2319205_2320150_+	NAD-dependent deacetylase	NA	NA	NA	NA
WP_000280803.1\|2320127_2321150_+	lipoate--protein ligase	A0A2H4UVX5	Bodo_saltans_virus	1.1e-09	29.7

DBSCAN-SWA_174

2342248 : 2343091

Anomala_cuprea_entomopoxvirus(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000209565.1\|2342248_2343091_+	ABC transporter ATP-binding protein	W6JKT0	Anomala_cuprea_entomopoxvirus	7.7e-12	27.2

DBSCAN-SWA_175

2353009 : 2361427

Staphylococcus_phage(66.67%)

integrase

attL 2342117:2342131|attR 2364469:2364483

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
2342117:2342131	attL	NA	NA	NA	NA
WP_000655692.1\|2353009_2354113_-	aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme	A0A0B5JD48	Pandoravirus	3.9e-11	28.0
WP_001550052.1\|2354776_2355622_+	ParB/RepB/Spo0J family partition protein	A0A1C9EHW0	Gordonia_phage	1.6e-12	34.4
WP_001077602.1\|2355778_2356660_+	mechanosensitive ion channel family protein	NA	NA	NA	NA
WP_000157345.1\|2356689_2356893_+	DUF951 domain-containing protein	NA	NA	NA	NA
WP_001218732.1\|2356904_2358002_+	redox-regulated ATPase YchF	NA	NA	NA	NA
WP_001052483.1\|2358087_2358279_-	hypothetical protein	U3PCX8	Staphylococcus_phage	4.9e-23	80.0
WP_001261460.1\|2358522_2358819_+	30S ribosomal protein S6	NA	NA	NA	NA
WP_000934799.1\|2358839_2359343_+	single-stranded DNA-binding protein	A0A1W6JPL9	Staphylococcus_phage	1.2e-60	74.7
WP_000897044.1\|2359394_2359637_+	30S ribosomal protein S18	NA	NA	NA	NA
WP_001822249.1\|2359902_2360841_-	Abi family protein	NA	NA	NA	NA
WP_001797636.1\|2360879_2361191_-\|integrase	tyrosine-type recombinase/integrase	Q4ZE80	Staphylococcus_phage	5.5e-24	70.5
WP_000237577.1\|2361268_2361427_-\|integrase	integrase	Q4ZE80	Staphylococcus_phage	6.7e-10	66.7
2364469:2364483	attR	NA	NA	NA	NA

DBSCAN-SWA_176

2367622 : 2369146

Enterococcus_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000930486.1\|2367622_2369146_-	alkyl hydroperoxide reductase subunit F	A0A249XZT7	Enterococcus_phage	1.9e-40	33.6

DBSCAN-SWA_177

2378106 : 2383556

Klosneuvirus(25.0%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000264071.1\|2378106_2379573_+	IMP dehydrogenase	A0A1V0SHK8	Klosneuvirus	5.2e-96	40.5
WP_000424966.1\|2379597_2381139_+	glutamine-hydrolyzing GMP synthase	A0A1V0SH76	Hokovirus	1.2e-23	32.6
WP_000551776.1\|2381251_2381788_-	hypothetical protein	NA	NA	NA	NA
WP_000041883.1\|2382180_2382885_-	type II toxin-antitoxin system PemK/MazF family toxin	U5U4R0	Staphylococcus_phage	2.6e-29	37.6
WP_000159787.1\|2383283_2383556_-\|transposase	transposase	A0A0C5AJ30	Paenibacillus_phage	1.3e-13	50.6

DBSCAN-SWA_178

2397258 : 2400031

Staphylococcus_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000028628.1\|2397258_2398815_+	type I restriction-modification system subunit M	A0A2H4PQP4	Staphylococcus_phage	6.8e-288	99.2
WP_046593615.1\|2398807_2400031_+	restriction endonuclease subunit S	A0A2H4PQP5	Staphylococcus_phage	1.1e-131	63.5

DBSCAN-SWA_179

2426220 : 2432457

Lactococcus_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000634105.1\|2426220_2427135_+	cysteine synthase family protein	A0A1W6JIM2	Lactococcus_phage	6.6e-49	39.7
WP_001036663.1\|2427118_2428261_+	bifunctional cystathionine gamma-lyase/homocysteine desulfhydrase	NA	NA	NA	NA
WP_000569286.1\|2428554_2429580_+	methionine ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	8.2e-32	37.3
WP_000467994.1\|2429583_2430243_+	ABC transporter permease	NA	NA	NA	NA
WP_000825521.1\|2430279_2431122_+	dipeptide ABC transporter glycylmethionine-binding lipoprotein	NA	NA	NA	NA
WP_001170264.1\|2431452_2432457_+	autolysin/adhesin Aaa	A0A0A7NU10	Lactobacillus_phage	1.6e-24	41.2

DBSCAN-SWA_180

2440895 : 2447265

Streptococcus_phage(33.33%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001251201.1\|2440895_2442254_+	cell division protein FtsK	A0A1S5SFB5	Streptococcus_phage	8.9e-42	29.9
WP_000681144.1\|2442258_2444106_+	membrane protein	NA	NA	NA	NA
WP_001624771.1\|2444095_2445142_+	CHAP domain-containing protein	A0A1X9I9L1	Staphylococcus_phage	4.8e-19	36.9
WP_000810443.1\|2445148_2445739_+	hypothetical protein	NA	NA	NA	NA
WP_001255377.1\|2445794_2446136_+	cystatin-like fold lipoprotein	NA	NA	NA	NA
WP_000746372.1\|2446244_2446748_+\|transposase	transposase	NA	NA	NA	NA
WP_078056058.1\|2446728_2447265_+\|transposase	IS30 family transposase	Q9MBM9	Staphylococcus_prophage	9.9e-29	43.6

DBSCAN-SWA_181

2462445 : 2464143

Streptococcus_virus(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001109047.1\|2462445_2464143_+	DNA polymerase III subunit gamma/tau	A0A1U9WR94	Streptococcus_virus	1.9e-54	42.3

DBSCAN-SWA_182

2473534 : 2474152

Streptococcus_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001272126.1\|2473534_2474152_+	dTMP kinase	M1PSC7	Streptococcus_phage	9.2e-47	48.3

DBSCAN-SWA_183

2478058 : 2481156

Streptococcus_phage(50.0%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000279926.1\|2478058_2478898_+	16S rRNA (cytidine(1402)-2'-O)-methyltransferase	M1PLC5	Streptococcus_phage	2.7e-57	45.8
WP_001051127.1\|2479182_2481156_+\|tRNA	methionine--tRNA ligase	A0A1V0SHR2	Klosneuvirus	1.9e-93	36.2

DBSCAN-SWA_184

2487040 : 2489505

Tupanvirus(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001252529.1\|2487040_2488393_+	bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU	A0A2K9L821	Tupanvirus	8.3e-24	30.4
WP_000933774.1\|2488539_2489505_+	ribose-phosphate diphosphokinase	A0A1V0SHF7	Hokovirus	6.1e-45	35.4

DBSCAN-SWA_185

2498761 : 2509033

Klosneuvirus(16.67%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001176715.1\|2498761_2500057_+\|tRNA	tRNA lysidine(34) synthetase TilS	A0A1V0SI91	Klosneuvirus	4.8e-13	24.5
WP_000551283.1\|2500061_2500601_+	hypoxanthine phosphoribosyltransferase	A0A218MMB5	uncultured_virus	6.5e-12	29.8
WP_001167888.1\|2500857_2502951_+	ATP-dependent metallopeptidase FtsH/Yme1/Tma family protein	E5EQ50	Micromonas_sp._RCC1109_virus	4.0e-110	42.7
WP_000148605.1\|2503179_2504061_+	Hsp33 family molecular chaperone HslO	NA	NA	NA	NA
WP_000057594.1\|2504239_2505172_+	cysteine synthase A	A0A1X9I5K7	Streptococcus_phage	3.7e-108	65.7
WP_000167924.1\|2505387_2506191_+	dihydropteroate synthase	A0A0B5J4J5	Pandoravirus	1.3e-21	29.3
WP_001154302.1\|2506168_2506534_+	dihydroneopterin aldolase	NA	NA	NA	NA
WP_000613716.1\|2506530_2507007_+	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA
WP_001790128.1\|2507400_2507493_+	hypothetical protein	NA	NA	NA	NA
WP_001288202.1\|2507545_2509033_+\|tRNA	lysine--tRNA ligase	A0A1V0SAC0	Catovirus	2.1e-92	41.1

DBSCAN-SWA_186

2527964 : 2530421

Escherichia_phage(100.0%)

protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000897132.1\|2527964_2530421_+\|protease	ATP-dependent Clp protease ATP-binding subunit	A0A1C3S747	Escherichia_phage	1.4e-133	41.2

DBSCAN-SWA_187

2536432 : 2537833

Catovirus(100.0%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000631963.1\|2536432_2537833_+\|tRNA	cysteine--tRNA ligase	A0A1V0SAQ2	Catovirus	3.2e-55	32.0

DBSCAN-SWA_188

2544898 : 2555852

uncultured_Mediterranean_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000918667.1\|2544898_2548450_+	DNA-directed RNA polymerase subunit beta	A0A1B1ISA9	uncultured_Mediterranean_phage	2.1e-50	24.3
WP_001788197.1\|2548613_2552210_+	DNA-directed RNA polymerase subunit beta'	R4TQM7	Phaeocystis_globosa_virus	3.3e-67	24.6
WP_000031892.1\|2552346_2552601_+	50S ribosomal protein L7ae-like protein	NA	NA	NA	NA
WP_001142337.1\|2552698_2553112_+	30S ribosomal protein S12	NA	NA	NA	NA
WP_001137495.1\|2553177_2553648_+	30S ribosomal protein S7	NA	NA	NA	NA
WP_000090315.1\|2553770_2555852_+	elongation factor G	E4ZFJ7	Streptococcus_phage	2.7e-66	28.3

DBSCAN-SWA_189

2558880 : 2560068

Emiliania_huxleyi_virus(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000250824.1\|2558880_2560068_+	glycine C-acetyltransferase	V5LQ39	Emiliania_huxleyi_virus	7.5e-45	30.6

DBSCAN-SWA_190

2566645 : 2567308

Enterococcus_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001067262.1\|2566645_2567308_-	deoxynucleoside kinase	A0A0M3UL55	Enterococcus_phage	1.4e-24	37.4

DBSCAN-SWA_191

2585749 : 2589070

Burkholderia_virus(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000347061.1\|2585749_2587150_+	MFS transporter	Q6JIH2	Burkholderia_virus	9.4e-55	32.8
WP_001100835.1\|2587693_2589070_+	long-chain fatty acid--CoA ligase	A0A2H4PQM9	Staphylococcus_phage	3.9e-21	24.5

DBSCAN-SWA_192

2592711 : 2593368

Elephant_endotheliotropic_herpesvirus(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000455256.1\|2592711_2593368_+	uracil-DNA glycosylase	U5U4C1	Elephant_endotheliotropic_herpesvirus	1.1e-45	46.4

DBSCAN-SWA_193

2604673 : 2605996

Erysipelothrix_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000860582.1\|2604673_2605996_-	FAD-containing oxidoreductase	A0A2K5B2C5	Erysipelothrix_phage	2.2e-109	47.3

DBSCAN-SWA_194

2619543 : 2622897

Cafeteria_roenbergensis_virus(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000180230.1\|2619543_2620839_+	HD domain-containing protein	E3T4P8	Cafeteria_roenbergensis_virus	2.1e-24	27.9
WP_001788287.1\|2620866_2621388_+	hypothetical protein	NA	NA	NA	NA
WP_001200748.1\|2621886_2622897_+	alcohol dehydrogenase AdhP	A0A2K9L339	Tupanvirus	5.6e-33	27.3

DBSCAN-SWA_195

2635968 : 2636529

Streptococcus_phage(100.0%)

integrase

attL 2628562:2628576|attR 2641210:2641224

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
2628562:2628576	attL	NA	NA	NA	NA
WP_001044914.1\|2635968_2636529_+\|integrase	tyrosine-type recombinase/integrase	A0A141E172	Streptococcus_phage	1.3e-18	35.1
WP_001044914.1\|2635968_2636529_+\|integrase	tyrosine-type recombinase/integrase	A0A141E172	Streptococcus_phage	1.3e-18	35.1
2641210:2641224	attR	NA	NA	NA	NA

DBSCAN-SWA_196

2647680 : 2648424

Indivirus(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000894464.1\|2647680_2648424_-	metal ABC transporter ATP-binding protein	A0A1V0SE00	Indivirus	1.2e-11	29.7

DBSCAN-SWA_197

2655358 : 2659317

Streptomyces_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000832260.1\|2655358_2655757_+	glycerol-3-phosphate cytidylyltransferase	A0A222YWT0	Streptomyces_phage	3.2e-16	39.9
WP_000793070.1\|2655873_2657169_-	D-alanyl-D-alanine carboxypeptidase	B6DZZ7	Stx2-converting_phage	2.0e-14	26.9
WP_000817954.1\|2657589_2659317_+	ABC transporter ATP-binding protein	W8CYL7	Bacillus_phage	9.7e-110	43.3

DBSCAN-SWA_198

2662544 : 2663342

Planktothrix_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001080809.1\|2662544_2663342_+	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	1.1e-18	30.7

DBSCAN-SWA_199

2669864 : 2670908

Acanthamoeba_polyphaga_mimivirus(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001030771.1\|2669864_2670908_+	alpha/beta hydrolase	A0A0G2YDK2	Acanthamoeba_polyphaga_mimivirus	2.0e-17	26.6

DBSCAN-SWA_200

2675282 : 2676044

Planktothrix_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000985996.1\|2675282_2676044_+	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	7.2e-33	34.8

DBSCAN-SWA_201

2680875 : 2681673

Bacillus_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000731644.1\|2680875_2681673_-	LysM peptidoglycan-binding domain-containing protein	A0A223LD43	Bacillus_phage	1.2e-06	30.2

DBSCAN-SWA_202

2686935 : 2687409

Pandoravirus(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000833483.1\|2686935_2687409_+	cupin	A0A291AU44	Pandoravirus	2.1e-14	39.4

DBSCAN-SWA_203

2694200 : 2700480

Enterococcus_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000820892.1\|2694200_2694767_-	TIGR00730 family Rossman fold protein	A0A1G5S9X4	Enterococcus_phage	6.1e-21	36.9
WP_000148828.1\|2694768_2695227_-	YaiI/YqxD family protein	NA	NA	NA	NA
WP_000358498.1\|2695229_2695913_-	hypothetical protein	NA	NA	NA	NA
WP_000469890.1\|2696084_2696960_-	undecaprenyl-diphosphate phosphatase	NA	NA	NA	NA
WP_000737143.1\|2697178_2698810_+	ABC transporter ATP-binding protein/permease	W5SAS9	Pithovirus	6.7e-12	27.8
WP_000857602.1\|2698806_2700480_+	amino acid ABC transporter ATP-binding/permease protein	W8CYL7	Bacillus_phage	4.5e-11	22.9

DBSCAN-SWA_204

2705457 : 2706831

Bandra_megavirus(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000952048.1\|2705457_2706831_+	deoxyribodipyrimidine photo-lyase	A0A2K9V7Z5	Bandra_megavirus	5.6e-44	29.2

DBSCAN-SWA_205

2718443 : 2728289

Staphylococcus_phage(12.5%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000931237.1\|2718443_2719283_+	aldo/keto reductase	A0A2H4PQR8	Staphylococcus_phage	5.1e-56	42.3
WP_000702782.1\|2719414_2720398_+	glycosyltransferase family 2 protein	A0A192Y8W7	Salmonella_phage	1.5e-62	43.3
WP_000244412.1\|2720469_2721525_-	HAMP domain-containing histidine kinase	A0A1V0SGX0	Hokovirus	2.1e-14	30.0
WP_000149344.1\|2721524_2722211_-	response regulator transcription factor	NA	NA	NA	NA
WP_001037807.1\|2722185_2722659_-	DoxX family protein	NA	NA	NA	NA
WP_001093553.1\|2723000_2723441_-	DM13 domain-containing protein	NA	NA	NA	NA
WP_000637687.1\|2723720_2724305_-	hypothetical protein	NA	NA	NA	NA
WP_001062972.1\|2724403_2725117_-	7-carboxy-7-deazaguanine synthase QueE	A0A1U9WRB6	Streptococcus_virus	6.5e-52	43.5
WP_000941336.1\|2725120_2725540_-	6-carboxytetrahydropterin synthase QueD	S4U060	uncultured_phage	6.3e-07	28.7
WP_000446724.1\|2725541_2726210_-	7-cyano-7-deazaguanine synthase QueC	A0A2H4J8Q7	uncultured_Caudovirales_phage	9.6e-66	57.5
WP_000604514.1\|2726560_2727154_+	aminodeoxychorismate/anthranilate synthase component II	A0A0P0IKJ1	Acinetobacter_phage	4.4e-38	42.9
WP_001217785.1\|2727137_2728289_+	anthranilate synthase component I family protein	A0A0B5J984	Pandoravirus	1.6e-23	35.7

DBSCAN-SWA_206

2731428 : 2755050

uncultured_Caudovirales_phage(35.71%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000098285.1\|2731428_2733369_+	polyglycerol-phosphate lipoteichoic acid synthase LtaS	W6LM83	Streptococcus_phage	1.3e-110	39.5
WP_000525111.1\|2733639_2735523_+	ABC-F family ATP-binding cassette domain-containing protein	A0A2K9L3Z8	Tupanvirus	2.0e-55	30.6
WP_000983677.1\|2735534_2737316_+	DNA helicase RecQ	A0A2P1EM61	Moumouvirus	6.5e-77	37.0
WP_000589260.1\|2737537_2738515_+	ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	5.4e-25	33.3
WP_000180991.1\|2738507_2740022_+	ABC transporter permease/substrate-binding protein	NA	NA	NA	NA
WP_000663030.1\|2740261_2741320_+	histidinol-phosphate transaminase	A0A1X6WGT4	Pacmanvirus	7.9e-22	26.7
WP_000197271.1\|2741670_2742213_+	5'-3'-deoxyribonucleotidase	NA	NA	NA	NA
WP_000429014.1\|2742892_2743810_-	diacylglycerol kinase family lipid kinase	A0A1V0SBJ0	Catovirus	3.7e-07	22.0
WP_001790641.1\|2743900_2744002_+	hypothetical protein	NA	NA	NA	NA
WP_000193751.1\|2744080_2745586_-	peptide MFS transporter	A0A0P0IY73	Acinetobacter_phage	2.0e-58	32.2
WP_161575764.1\|2745926_2746427_-	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	E7DN65	Pneumococcus_phage	2.9e-51	70.8
WP_001068497.1\|2746446_2747313_-	DMT family transporter	NA	NA	NA	NA
WP_000692521.1\|2748114_2748513_+	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	A0A2H4J545	uncultured_Caudovirales_phage	1.2e-52	72.0
WP_000855505.1\|2748475_2750581_+	class 1b ribonucleoside-diphosphate reductase subunit alpha	A0A2H4J2N6	uncultured_Caudovirales_phage	0.0e+00	91.7
WP_000562498.1\|2750698_2751670_+	class 1b ribonucleoside-diphosphate reductase subunit beta	A0A2H4J4P3	uncultured_Caudovirales_phage	4.2e-171	91.3
WP_000499195.1\|2752183_2752339_+	hypothetical protein	NA	NA	NA	NA
WP_000876318.1\|2752377_2753349_+	ABC transporter permease	A0A2H4IY97	uncultured_Caudovirales_phage	4.3e-139	78.9
WP_001245578.1\|2753335_2754292_+	iron chelate uptake ABC transporter family permease subunit	A0A2H4J116	uncultured_Caudovirales_phage	1.2e-05	57.8
WP_000616842.1\|2754288_2755050_+	ABC transporter ATP-binding protein	Q9EMR9	Amsacta_moorei_entomopoxvirus	8.5e-18	31.6

DBSCAN-SWA_207

2764332 : 2770043

Streptococcus_phage(66.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000460983.1\|2764332_2765403_-	GGDEF domain-containing protein	A0A127AWB9	Bacillus_phage	1.3e-16	33.5
WP_000258151.1\|2765720_2766776_+	undecaprenyl/decaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphate transferase	NA	NA	NA	NA
WP_000192947.1\|2766945_2767587_-	YigZ family protein	A0A1X9I5T8	Streptococcus_phage	4.0e-37	48.3
WP_000686342.1\|2767730_2768597_+	DegV family protein	NA	NA	NA	NA
WP_001548033.1\|2768960_2770043_+	DEAD/DEAH box helicase	A0A1X9I5S6	Streptococcus_phage	1.3e-43	35.2

DBSCAN-SWA_208

2776121 : 2776961

uncultured_Caudovirales_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000749380.1\|2776121_2776961_+	CHAP domain-containing protein	A0A2H4J675	uncultured_Caudovirales_phage	3.5e-12	42.2

DBSCAN-SWA_209

2780279 : 2783126

uncultured_Mediterranean_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000662681.1\|2780279_2783126_+	excinuclease ABC subunit UvrA	A0A1B1IVR3	uncultured_Mediterranean_phage	0.0e+00	57.1

DBSCAN-SWA_210

2787516 : 2793393

Streptococcus_phage(40.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000134963.1\|2787516_2788452_+	thioredoxin-disulfide reductase	G3MA85	Bacillus_virus	2.9e-84	49.2
WP_000369722.1\|2789275_2790187_+	RNase adapter RapZ	A0A0R8VB27	Thermobifida_phage	1.1e-08	36.1
WP_001248939.1\|2790183_2791179_+	YvcK family protein	A1IMD5	Streptococcus_phage	4.8e-53	41.9
WP_000006551.1\|2791288_2792233_+	DNA-binding protein WhiA	Q7AWZ3	Streptococcus_phage	3.1e-54	40.6
WP_001049165.1\|2792805_2793393_+	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	A0A223W000	Agrobacterium_phage	8.2e-53	55.3

DBSCAN-SWA_211

2802449 : 2821702

Staphylococcus_phage(72.22%)

integrase,terminase,coat

attL 2792527:2792543|attR 2820880:2820896

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
2792527:2792543	attL	NA	NA	NA	NA
WP_001121760.1\|2802449_2803754_+	phosphopyruvate hydratase	W6LP63	Streptococcus_phage	6.7e-196	80.7
WP_000785252.1\|2804093_2804552_+	hypothetical protein	NA	NA	NA	NA
WP_000556760.1\|2804618_2804852_+	preprotein translocase subunit SecG	NA	NA	NA	NA
WP_001165952.1\|2804967_2805708_+	alpha/beta fold hydrolase	NA	NA	NA	NA
WP_001050064.1\|2805741_2808114_+	ribonuclease R	Q0GXV6	Lactococcus_phage	2.7e-94	39.2
WP_001085185.1\|2808135_2808600_+	SsrA-binding protein SmpB	W5RAM5	Staphylococcus_phage	1.5e-81	100.0
WP_000121223.1\|2809162_2810269_-\|integrase	site-specific integrase	H0UST3	Bacillus_phage	5.9e-76	44.2
WP_072474260.1\|2810274_2810922_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_001060953.1\|2811079_2811286_+	hypothetical protein	NA	NA	NA	NA
WP_161575765.1\|2811321_2811549_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_000784892.1\|2811545_2811719_+	hypothetical protein	NA	NA	NA	NA
WP_001231376.1\|2811685_2811889_+	hypothetical protein	A0A1W6JQF4	Staphylococcus_phage	2.0e-30	98.5
WP_000403833.1\|2811890_2812274_+	hypothetical protein	A0A1W6JQI7	Staphylococcus_phage	3.3e-63	96.9
WP_001103972.1\|2812274_2812598_+	DUF1474 family protein	A0A1W6JQH0	Staphylococcus_phage	2.6e-40	93.3
WP_161575766.1\|2812642_2814259_+	phage resistance protein	A0A1W6JPF4	Staphylococcus_phage	5.1e-246	77.9
WP_161575767.1\|2814434_2815238_+	DNA primase	Q4ZE69	Staphylococcus_phage	1.4e-148	96.3
WP_161575768.1\|2815224_2815497_+	pathogenicity island protein	Q4ZE68	Staphylococcus_phage	5.7e-41	91.1
WP_161575769.1\|2815498_2816140_+	pathogenicity island protein	Q4ZE67	Staphylococcus_phage	5.5e-111	93.0
WP_161575770.1\|2816675_2817017_+	pathogenicity island protein	Q4ZE66	Staphylococcus_phage	1.2e-56	97.3
WP_000846290.1\|2817028_2817607_+	hypothetical protein	A0A2H4JBG0	uncultured_Caudovirales_phage	1.3e-29	39.5
WP_000448773.1\|2817624_2817843_+	hypothetical protein	NA	NA	NA	NA
WP_123089815.1\|2817893_2818421_+\|coat	spore coat protein	Q4ZE87	Staphylococcus_phage	7.8e-87	94.9
WP_123089814.1\|2818423_2818765_+	pathogenicity island protein	A0A1W6JQM3	Staphylococcus_phage	3.5e-56	94.7
WP_001293078.1\|2818761_2819331_+\|terminase	terminase small subunit	Q4ZE85	Staphylococcus_phage	1.7e-100	97.9
WP_001820511.1\|2819722_2820907_+	Abi family protein	A0A0H4U080	Erysipelothrix_phage	1.5e-05	21.5
2820880:2820896	attR	NA	NA	NA	NA
WP_001035618.1\|2821147_2821702_-	DUF4888 domain-containing protein	A0A1W6JQE5	Staphylococcus_phage	4.8e-71	76.1

DBSCAN-SWA_212

2825756 : 2826485

Staphylococcus_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000757406.1\|2825756_2826485_-	DUF5067 domain-containing protein	H9A0X8	Staphylococcus_phage	1.3e-18	37.5

DBSCAN-SWA_213

2835584 : 2836828

Bacillus_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001548082.1\|2835584_2836271_+	thermonuclease family protein	A0A1P8CWK6	Bacillus_phage	3.8e-33	54.2
WP_001059082.1\|2836627_2836828_+	cold-shock protein	Q9AZD3	Lactococcus_phage	1.4e-20	70.8

DBSCAN-SWA_214

2840232 : 2845409

Streptococcus_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001802951.1\|2840232_2840793_+	histidine phosphatase family protein	A0A1X9IGJ2	Lactococcus_phage	3.8e-31	40.4
WP_000255561.1\|2840865_2841483_-	amino acid transporter	NA	NA	NA	NA
WP_000569884.1\|2841637_2842132_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_000974460.1\|2842530_2842953_-	organic hydroperoxide resistance protein	NA	NA	NA	NA
WP_000150017.1\|2843100_2843817_+	type I 3-dehydroquinate dehydratase	W6LP76	Streptococcus_phage	3.0e-17	30.6
WP_000422908.1\|2843899_2844439_+	nitroreductase	NA	NA	NA	NA
WP_001190695.1\|2844588_2844909_-	thioredoxin family protein	A0A1X9I9P5	Staphylococcus_phage	3.1e-06	36.4
WP_000589549.1\|2845052_2845409_+	arsenate reductase family protein	M1PLC0	Streptococcus_phage	4.7e-19	46.6

DBSCAN-SWA_215

2848670 : 2849696

Planktothrix_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000571218.1\|2848670_2849696_+	methionine ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	1.2e-27	36.8

DBSCAN-SWA_216

2853182 : 2876492

Staphylococcus_phage(85.29%)

integrase

attL 2856012:2856026|attR 2869026:2869040

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000168845.1\|2853182_2853944_+	Fe-S cluster assembly ATPase SufC	A0A1V0SE00	Indivirus	4.4e-06	23.3
WP_161575771.1\|2854041_2855349_+	Fe-S cluster assembly protein SufD	NA	NA	NA	NA
WP_001006454.1\|2855454_2856705_+	cysteine desulfurase	Q2XUY6	environmental_halophage	1.4e-110	44.5
2856012:2856026	attL	NA	NA	NA	NA
WP_001010508.1\|2856694_2857159_+	SUF system NifU family Fe-S cluster assembly protein	NA	NA	NA	NA
WP_001074405.1\|2857309_2858707_+	Fe-S cluster assembly protein SufB	NA	NA	NA	NA
WP_031764589.1\|2858774_2859824_-\|integrase	site-specific integrase	A1KWY3	Staphylococcus_virus	5.9e-203	99.7
WP_031900793.1\|2859890_2860133_-	hypothetical protein	NA	NA	NA	NA
WP_001558608.1\|2860143_2861127_-	glycosyltransferase family 2 protein	NA	NA	NA	NA
WP_031881520.1\|2861182_2861812_-	LexA family transcriptional regulator	Q4ZB06	Staphylococcus_virus	5.8e-113	99.5
WP_015978369.1\|2861965_2862193_+	helix-turn-helix transcriptional regulator	Q4ZB05	Staphylococcus_virus	1.6e-36	100.0
WP_031900794.1\|2862215_2862992_+	transcriptional regulator	A0A2I6PD87	Staphylococcus_phage	9.0e-124	89.1
WP_000435341.1\|2863017_2863278_+	transcriptional regulator	A7TW91	Staphylococcus_phage	2.7e-40	100.0
WP_000351243.1\|2863301_2863841_-	hypothetical protein	A7TW92	Staphylococcus_phage	1.7e-97	100.0
WP_001148618.1\|2863897_2864650_+	oxidoreductase	A0A1X9H0A0	Staphylococcus_phage	8.7e-140	100.0
WP_000388066.1\|2864666_2864861_+	hypothetical protein	A0A1X9H0A2	Staphylococcus_phage	1.5e-19	100.0
WP_000939496.1\|2864891_2865032_+	hypothetical protein	A0A2I6PDG0	Staphylococcus_phage	1.9e-16	100.0
WP_000275058.1\|2865046_2865679_-	hypothetical protein	A7TW95	Staphylococcus_phage	1.5e-113	100.0
WP_000594790.1\|2865749_2865971_+	hypothetical protein	A0A1X9H0Q4	Staphylococcus_phage	1.5e-31	100.0
WP_050956528.1\|2865963_2866125_+	DUF1270 domain-containing protein	A7TWM3	Staphylococcus_phage	7.2e-20	98.1
WP_000291489.1\|2866217_2866478_+	DUF1108 family protein	A0A1W6JQ03	Staphylococcus_phage	7.6e-43	100.0
WP_001205732.1\|2866486_2866750_+	hypothetical protein	A0A2I6PDG2	Staphylococcus_phage	7.7e-43	100.0
WP_000700562.1\|2866758_2868702_+	AAA family ATPase	A0A2I6PDH3	Staphylococcus_phage	0.0e+00	99.2
WP_000138481.1\|2868703_2869624_+	recombinase	A0A1V0E5D7	Staphylococcus_phage	1.0e-166	100.0
2869026:2869040	attR	NA	NA	NA	NA
WP_071621397.1\|2869704_2870322_+	MBL fold metallo-hydrolase	S4SWA4	Staphylococcus_phage	9.1e-87	100.0
WP_000934770.1\|2870322_2870793_+	single-stranded DNA-binding protein	A0A0E3T9H6	Staphylococcus_phage	4.8e-80	99.4
WP_000148301.1\|2870822_2871707_+	DnaD domain protein	S4V6D4	Staphylococcus_phage	3.1e-136	95.9
WP_000338528.1\|2871713_2871932_+	hypothetical protein	A0A1P8L6E4	Staphylococcus_phage	1.4e-37	100.0
WP_000401964.1\|2871940_2872345_+	RusA family crossover junction endodeoxyribonuclease	A0A0E3XBN4	Staphylococcus_phage	1.4e-72	100.0
WP_000101274.1\|2872357_2872726_+	hypothetical protein	W5RAK8	Staphylococcus_phage	8.2e-51	100.0
WP_000131366.1\|2872729_2872972_+	hypothetical protein	A0EWX8	Staphylococcus_phage	3.9e-41	100.0
WP_161575772.1\|2873036_2873486_+	hypothetical protein	A0A2I6PDH2	Staphylococcus_phage	1.8e-79	98.7
WP_001105598.1\|2873482_2873992_+	hypothetical protein	A0A1X9H0D4	Staphylococcus_phage	3.2e-93	100.0
WP_000197967.1\|2873988_2874399_+	hypothetical protein	C8CH13	Staphylococcus_phage	2.3e-70	100.0
WP_001066444.1\|2874391_2874928_+	hypothetical protein	A0A1X9H0S5	Staphylococcus_phage	1.4e-96	100.0
WP_000195820.1\|2874964_2875171_+	DUF1381 domain-containing protein	A0A1X9H0C2	Staphylococcus_phage	1.3e-21	100.0
WP_000595265.1\|2875167_2875317_+	transcriptional activator RinB	A0A1W6JPZ2	Staphylococcus_phage	4.8e-18	100.0
WP_000265041.1\|2875316_2875517_+	DUF1514 domain-containing protein	R9QT57	Staphylococcus_phage	1.1e-28	100.0
WP_000590126.1\|2875544_2875961_+	hypothetical protein	A0A1X9H0U8	Staphylococcus_phage	2.9e-76	100.0
WP_000988336.1\|2876192_2876492_+	HNH endonuclease	A0EWY8	Staphylococcus_phage	4.6e-52	100.0

Anti-CRISPR protein detection

Acr_ID: NZ_CP047809.1|WP_001790641.1|2743900_2744002_+|hypothetical-protein

Click the colored protein region to show detailed information

Acr ID

Acr position

Acr size

Homology with known anti

Neighbor HTH/AcRanker

Neighbor Aca

In prophage

Protospacer in prophage

NZ_CP047809.1|WP_001790641.1|2743900_2744002_+|hypothetical-protein

2743900_2744002_+

33 aa aa

2731428-2755050

yes

CRISPR ID	CRISPR type	Spacer info	Spacer location	Spacer length	Protospacer location	Mismatch
NZ_CP047809_1	Orphan	1.1\|62620\|26\|NZ_CP047809\|CRT	62620-62645	26	2751836-2751861	2
NZ_CP047809_2	Orphan	2.3\|293709\|37\|NZ_CP047809\|CRT	293709-293745	37	2742350-2742386	0
NZ_CP047809_2	Orphan	2.3\|293709\|37\|NZ_CP047809\|CRT	293709-293745	37	2741416-2741380	0

1. spacer 1.1|62620|26|NZ_CP047809|CRT matches to NZ_CP047809 position: 2751836-2751861, mismatch: 2

cggggccccaacacagaggctggcgg	CRISPR spacer
cggggccccaacacagaagcaggcgg	Protospacer
*****************.** *****

2. spacer 2.3|293709|37|NZ_CP047809|CRT matches to NZ_CP047809 position: 2742350-2742386, mismatch: 0

gaaattggattcccaatttctacagacaatgcaagtt	CRISPR spacer
gaaattggattcccaatttctacagacaatgcaagtt	Protospacer
*************************************

3. spacer 2.3|293709|37|NZ_CP047809|CRT matches to NZ_CP047809 position: 2741416-2741380, mismatch: 0

gaaattggattcccaatttctacagacaatgcaagtt	CRISPR spacer
gaaattggattcccaatttctacagacaatgcaagtt	Protospacer
*************************************

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP047809

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

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Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

Click the colored protein region to show detailed information