CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP047794	Staphylococcus aureus strain UP_551 chromosome, complete genome	13 crisprs	csa3,cas3,DinG,DEDDh,WYL	4	3	9	1

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP047794_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP047794_1

332060-332142

Orphan

Consensus_repeat	Method
TGTTGGGGCCCCACCCCAACTTGCA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP047794_1

>merge|NZ_CP047794|1|332060-332142|CRISPRCasFinder
TGTTGGGGCCCCACCCCAACTTGCACATTATAGTAAGTTGACATTACGTCACCTTCTGTGTTGGGGCCCCACCCCAACTTGCA

>NZ_CP047794|1|1|332060-332142|CRISPRCasFinder
TGTTGGGGCCCCACCCCAACTTGCA	CATTATAGTAAGTTGACATTACGTCACCTTCTG
TGTTGGGGCCCCACCCCAACTTGCA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP047794.1\|WP_000717561.1\|340523_341492_+\|ATP-dependent-6-phosphofructokinase	unknown	unknown	gnl\|CDD\|235111
NZ_CP047794.1\|WP_000689995.1\|326359_327478_+\|alanine-dehydrogenase	unknown	unknown	gnl\|CDD\|240630
NZ_CP047794.1\|WP_160199092.1\|341513_343271_+\|pyruvate-kinase	unknown	unknown	gnl\|CDD\|235784
NZ_CP047794.1\|WP_000829167.1\|345329_346451_+\|citrate-synthase	unknown	unknown	gnl\|CDD\|184468
NZ_CP047794.1\|WP_000626082.1\|332418_333360_+\|pApA-hydrolase-Pde2	unknown	unknown	gnl\|CDD\|223691
NZ_CP047794.1\|WP_000040069.1\|324270_325473_+\|acetate-kinase	unknown	unknown	gnl\|CDD\|234680
NZ_CP047794.1\|WP_000160435.1\|330717_332016_+\|CBS-domain-containing-protein	unknown	unknown	gnl\|CDD\|226594
NZ_CP047794.1\|WP_000818525.1\|343620_344982_-\|amino-acid-permease	unknown	unknown	gnl\|CDD\|224038
NZ_CP047794.1\|WP_000136257.1\|322618_323113_+\|thiol-peroxidase	unknown	unknown	gnl\|CDD\|179055
NZ_CP047794.1\|WP_000840576.1\|323235_324183_+\|class-I-SAM-dependent-methyltransferase	unknown	unknown	gnl\|CDD\|223897
NZ_CP047794.1\|WP_000123175.1\|346499_347768_+\|NADP-dependent-isocitrate-dehydrogenase	unknown	unknown	gnl\|CDD\|180792
NZ_CP047794.1\|WP_000277602.1\|330099_330513_-\|universal-stress-protein	unknown	unknown	gnl\|CDD\|366180
NZ_CP047794.1\|WP_000058379.1\|337029_338259_+\|NAD-dependent-malic-enzyme-4	unknown	unknown	gnl\|CDD\|235976
NZ_CP047794.1\|WP_047213534.1\|321750_322521_+\|TSUP-family-transporter	unknown	unknown	gnl\|CDD\|182593
NZ_CP047794.1\|WP_000471571.1\|338453_339311_+\|acetyl-CoA-carboxylase-carboxyltransferase-subunit-beta	unknown	unknown	gnl\|CDD\|235547
NZ_CP047794.1\|WP_000777192.1\|329022_329712_+\|metal-dependent-hydrolase	unknown	unknown	gnl\|CDD\|234811
NZ_CP047794.1\|WP_000226939.1\|333380_336578_+\|DNA-polymerase-III-subunit-alpha	unknown	unknown	gnl\|CDD\|223660
NZ_CP047794.1\|WP_000161654.1\|327792_328848_-\|aminopeptidase-P-family-protein	unknown	unknown	gnl\|CDD\|223085
NZ_CP047794.1\|WP_000883646.1\|339310_340255_+\|acetyl-CoA-carboxylase-carboxyltransferase-subunit-alpha	unknown	unknown	gnl\|CDD\|235580
NZ_CP047794.1\|WP_000634175.1\|325718_326219_-\|universal-stress-protein	unknown	unknown	gnl\|CDD\|366180

Protein	Function_ID	Function_description	E-value
NZ_CP047794.1\|WP_000717561.1\|340523_341492_+\|ATP-dependent-6-phosphofructokinase	gnl\|CDD\|235111	PRK03202, PRK03202, ATP-dependent 6-phosphofructokinase.	0
NZ_CP047794.1\|WP_000689995.1\|326359_327478_+\|alanine-dehydrogenase	gnl\|CDD\|240630	cd05305, L-AlaDH, Alanine dehydrogenase NAD-binding and catalytic domains. Alanine dehydrogenase (L-AlaDH) catalyzes the NAD-dependent conversion of pyruvate to L-alanine via reductive amination. Like formate dehydrogenase and related enzymes, L-AlaDH is comprised of 2 domains connected by a long alpha helical stretch, each resembling a Rossmann fold NAD-binding domain. The NAD-binding domain is inserted within the linear sequence of the more divergent catalytic domain. Ligand binding and active site residues are found in the cleft between the subdomains. L-AlaDH is typically hexameric and is critical in carbon and nitrogen metabolism in micro-organisms.	0
NZ_CP047794.1\|WP_160199092.1\|341513_343271_+\|pyruvate-kinase	gnl\|CDD\|235784	PRK06354, PRK06354, pyruvate kinase; Provisional.	0
NZ_CP047794.1\|WP_000829167.1\|345329_346451_+\|citrate-synthase	gnl\|CDD\|184468	PRK14035, PRK14035, citrate synthase; Provisional.	0
NZ_CP047794.1\|WP_000626082.1\|332418_333360_+\|pApA-hydrolase-Pde2	gnl\|CDD\|223691	COG0618, COG0618, Exopolyphosphatase-related proteins [General function prediction only].	9.95606e-99
NZ_CP047794.1\|WP_000040069.1\|324270_325473_+\|acetate-kinase	gnl\|CDD\|234680	PRK00180, PRK00180, acetate kinase A/propionate kinase 2; Reviewed.	0
NZ_CP047794.1\|WP_000160435.1\|330717_332016_+\|CBS-domain-containing-protein	gnl\|CDD\|226594	COG4109, COG4109, Predicted transcriptional regulator containing CBS domains [Transcription].	0
NZ_CP047794.1\|WP_000818525.1\|343620_344982_-\|amino-acid-permease	gnl\|CDD\|224038	COG1113, AnsP, Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism].	0
NZ_CP047794.1\|WP_000136257.1\|322618_323113_+\|thiol-peroxidase	gnl\|CDD\|179055	PRK00522, tpx, thiol peroxidase.	5.93419e-100
NZ_CP047794.1\|WP_000840576.1\|323235_324183_+\|class-I-SAM-dependent-methyltransferase	gnl\|CDD\|223897	COG0827, COG0827, Adenine-specific DNA methylase [DNA replication, recombination, and repair].	3.79172e-57
NZ_CP047794.1\|WP_000123175.1\|346499_347768_+\|NADP-dependent-isocitrate-dehydrogenase	gnl\|CDD\|180792	PRK07006, PRK07006, isocitrate dehydrogenase; Reviewed.	0
NZ_CP047794.1\|WP_000277602.1\|330099_330513_-\|universal-stress-protein	gnl\|CDD\|366180	pfam00582, Usp, Universal stress protein family. The universal stress protein UspA is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. UspA enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae UspA reveals an alpha/beta fold similar to that of the Methanococcus jannaschii MJ0577 protein, which binds ATP, though UspA lacks ATP-binding activity.	6.00154e-19
NZ_CP047794.1\|WP_000058379.1\|337029_338259_+\|NAD-dependent-malic-enzyme-4	gnl\|CDD\|235976	PRK07232, PRK07232, bifunctional malic enzyme oxidoreductase/phosphotransacetylase; Reviewed.	0
NZ_CP047794.1\|WP_047213534.1\|321750_322521_+\|TSUP-family-transporter	gnl\|CDD\|182593	PRK10621, PRK10621, hypothetical protein; Provisional.	6.72678e-38
NZ_CP047794.1\|WP_000471571.1\|338453_339311_+\|acetyl-CoA-carboxylase-carboxyltransferase-subunit-beta	gnl\|CDD\|235547	PRK05654, PRK05654, acetyl-CoA carboxylase carboxyltransferase subunit beta.	0
NZ_CP047794.1\|WP_000777192.1\|329022_329712_+\|metal-dependent-hydrolase	gnl\|CDD\|234811	PRK00685, PRK00685, metal-dependent hydrolase; Provisional.	2.522e-133
NZ_CP047794.1\|WP_000226939.1\|333380_336578_+\|DNA-polymerase-III-subunit-alpha	gnl\|CDD\|223660	COG0587, DnaE, DNA polymerase III, alpha subunit [DNA replication, recombination, and repair].	0
NZ_CP047794.1\|WP_000161654.1\|327792_328848_-\|aminopeptidase-P-family-protein	gnl\|CDD\|223085	COG0006, PepP, Xaa-Pro aminopeptidase [Amino acid transport and metabolism].	2.79772e-126
NZ_CP047794.1\|WP_000883646.1\|339310_340255_+\|acetyl-CoA-carboxylase-carboxyltransferase-subunit-alpha	gnl\|CDD\|235580	PRK05724, PRK05724, acetyl-CoA carboxylase carboxyltransferase subunit alpha; Validated.	0
NZ_CP047794.1\|WP_000634175.1\|325718_326219_-\|universal-stress-protein	gnl\|CDD\|366180	pfam00582, Usp, Universal stress protein family. The universal stress protein UspA is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. UspA enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae UspA reveals an alpha/beta fold similar to that of the Methanococcus jannaschii MJ0577 protein, which binds ATP, though UspA lacks ATP-binding activity.	9.27306e-36

>NZ_CP047794.1|WP_000160435.1|330717_332016_+|CBS-domain-containing-protein
MTKHEQILDYIESLSIGSKISVRKIAKFLNVSEGTAYRAIKDADKMGMVATIDRVGTVRIEKRNRNEIEHLTFNEIVNIIDGQVLGGNKGITKMVSKFAIGAMELKDILKYIGPKTLLIVGNREDVQIEALKRGTAILITGGFKPSNKVINFANEHDLPVLSSSYDTFLVANIINKALFNQKIRKDILIVQDIMTPLDDLSVLFDTMKIADYKRMANRTGHTRFPVVNESYKLVGIVTSREMINTKDDDEIDKVMTRNPIYVNAMSTVASCAHMMIWEGIELIPVVSSNKKTVGVINRQDVLKSMQLLGRQPQMGETINDQIAKYITMNQDGITVEVSPLLINHYGTVSKAAFVSIIEETIQYEMRKFKKGNVMIENLNIVYIKTVPIESHITVRFGILDVGRNFAKIEVNMHSQNDKVASALVICQMFDEV
>NZ_CP047794.1|WP_000277602.1|330099_330513_-|universal-stress-protein
MYKNILLGVDTQLKNEKALKEVSKLAGEGTVVTVLNAISEQDAQASIKAGVHLNKLTEERSKRLEKTRKALEDYGIDYDQIIVRGNAKEELLKHANSGKYEIVVLSNRKAEDKKKFVLGSVSHKVAKRATIPVLIVK
>NZ_CP047794.1|WP_000777192.1|329022_329712_+|metal-dependent-hydrolase
MKLSFHGQSTIYLEGNNKKVIVDPFISNNPKCDLNIETVQVDYIVLTHGHFDHFGDVVELAKNTGATVIGSAEMADYLSSYHGVENVHGMNIGGKANFDFGSVKFVQAFHSSSFTHENGIPVYLGMPMGIVFEVEGKTIYHTGDTGLFSDMSLIAKRHPVDVCFVPIGDNFTMGIDDASYAINEFIKPKISVPIHYDTFPLIEQDPQQFKDAVNVGDVQILKPGESVQF
>NZ_CP047794.1|WP_000161654.1|327792_328848_-|aminopeptidase-P-family-protein
MTKISKIIDELNNQQADAAWITTPLNVYYFTGYRSEPHERLFALLIKKDGKQVLFCPKMEVEEVKASPFTGEIVGYLDTENPFSLYPQTINKLLIESEHLTVARQKQLISGFNVNSFGDIDLTIKQLRNIKSEDEISKIRKAAELADKCIEIGVSYLKEGVTEREVVNHIEQTIKQYGVNEMSFDTMVLFGDHAASPHGTPGDRRLKSNEYVLFDLGVIYEHYCSDMTRTIKFGEPNKEAQEIYNIVLEAETSAIQAIKPGIPLKDIDHIARNIISEKGYGEYFPHRLGHGLGLQEHEYQDVSSTNSNLLEAGMVITIEPGIYVPGVAGVRIEDDILVTNEGFEVLTHYEK
>NZ_CP047794.1|WP_000689995.1|326359_327478_+|alanine-dehydrogenase
MKIGIPREIKNNENRVGLSPSGVHALVESGHTVLVETNAGSGSFFEDVDYKEAGAEIVAEQAKVWDVDMVIKVKEPLESEYPYFKEGLVLFTYLHLANEDKLTQALIDRKVISIAYETVQLPDRSLPLLSPMSEVAGRMSAQVGAEFLQKLNGGMGILLGGVPGVPKGKVTIIGGGQAGTNAAKIALGLGADVTILDVNPKRLQQLDDLFGGRVHTIMSNPLNIELYVKQSDLVIGAVLIPGAKAPRLVTEDMIKQMKNGSVIIDIAIDQGGIFETTDKITTHDDPTYIKHGVVHYAVANMPGAVPRTSTLALNNATLPYALMLANKGYREAFKSNQPLSLGLNTYKGHVTNKGVAEAFEMEYKSVEEALQL
>NZ_CP047794.1|WP_000634175.1|325718_326219_-|universal-stress-protein
MITYKNILIAVDGSHEAEWAFNRAVGVAKRNDAKLTIVNVIDSRTYSSYEVYDAQFTEKSKHFAEELLNGYKEVATNAGVKDVETRLEFGSPKSIIPKKLAHEINADLIMSGTSGLNAVERFIVGSVSESIVRHAPCDVLVVRTEELPADFQPQVATTQLREKYQN
>NZ_CP047794.1|WP_000040069.1|324270_325473_+|acetate-kinase
MSKLILAINAGSSSLKFQLIRMPEEELVTKGLVERIGLKDSIFTIEVNGEKVKTVQDIKDHVEAVDIMLDAFKAHNIINDINDIDGTGHRVVHGGEKFPESVAITDEVEKEIEELSELAPLHNPANLMGIRAFRKLLPNIPHVAIFDTAFHQTMPEKAYLYSLPYHYYKDYGIRKYGFHGTSHKFVSQRAAEMLDKPIEDLRIISCHIGNGASIAAIDGGKSIDTSMGFTPLAGVTMGTRSGNIDPALIPFIMEKTGKTAEQVLEILNKESGLLGLSGTSSDLRDLSEEAESGKARSQMALDVFASKIHKYIGSYAARMHGVDVIVFTAGIGENSVEIRAKVLEGLEFMGVYWDPKKNENLLRGKEGFINYPHSPVKVVVIPTDEESMIARDVMTFGGLK
>NZ_CP047794.1|WP_000840576.1|323235_324183_+|class-I-SAM-dependent-methyltransferase
MAEQQTIMERLFHTLDEKAKTLNNENGQSFIENLGLAMEQVYTNERGLLEQSTLQDRRKAFQFAYLSLMQEEKIQANHQITPDSIGLILGFLVERFMNNQEELHIVDIASGAGHLSATVKEVLPEIAVMHHLIEVDPVLSRVSVHLANFLEIPFDVYPQDAIMPLPLEEADIVIGDFPVGYYPIDERSKEFKLGFEEGHSYSHYLLIEQAINALKDAGYAFLVVPSNIFTGEHVKQLEKYIATETEMQAFLNLPPTLFKNEKARKSILILQKKKSGETKPVEVLLANIPDFKNPSQFQGFMTELNQWMDTNRPKK
>NZ_CP047794.1|WP_000136257.1|322618_323113_+|thiol-peroxidase
MTEITFKGGPIHLKGQQINEGDFAPDFTVLDNDLNQVTLADYAGKKKLISVVPSIDTGVCDQQTRKFNSEASKEEGIVLTISADLPFAQKRWCASAGLDNVITLSDHRDLSFGENYGVVMEELRLLARAVFVLDADNKVVYKEIVSEGTDFPDFDAALAAYKNI
>NZ_CP047794.1|WP_047213534.1|321750_322521_+|TSUP-family-transporter
MDLNLTMIIIIILFGFIAAFIDSVVGGGGLISTPALLAIGLPPSVALGTNKLASSFGSLTSTIKFIRSGKVDLYVVAKLFGFVFLASACGAYIATMVPSQILKPLIIIALSSVFIFTLLKKDWGNTRTFTQFTFKKAILFAALFILIGFYDGFVGGGTGSFMLFVLLVFGFDFLSAAGNAKVLNFASNIGALVLFMVLGQVDYVIGLIMASSMIAGSYTGAHFAIKQGVGYVKVLFIIITAILILKNAFDYIQQFL
>NZ_CP047794.1|WP_000626082.1|332418_333360_+|pApA-hydrolase-Pde2
MISTLNEIMKCIEDNDTIIIHRHVRPDPDAYGSQLGLKYYIQQKFPQKQVFAVGEAESSLSFIGELDNIDDKTYQDALVIVCDTANAPRIDDERYSTGSKLIKIDHHPAVDQYGDINLVNTNASSTSEIIYDLISHFNDEAIVNKDIASVLYLGIVGDTGRFLFNNTSEHTMEIAGKLIGHDIDHNALLNKMMEKDPKMLPFQGYVLQHFELMDDGFCQVKITEDVLEQFGIQPNEASQFVNTIADIKGLKIWVFAVDEGSEIRCRLRSKGQLIINDIAQDFGGGGHPNASGVSVNSWDEFEQLATALRTKLN
>NZ_CP047794.1|WP_000226939.1|333380_336578_+|DNA-polymerase-III-subunit-alpha
MVAYLNIHTAYDLLNSSLKIEDAVRLAVSENVEALAITDTNVLYGFPKFYDACIANNIKPIFGMTIYVTNGLNTIETVVLAKDNNGLKDLYQLSSKIKMNSMENVSFELLQQFSSNLIIIFKNVADEHRDIVQVFDSHEDTYLDHQSVLVQGIKHVWIQNVCYQTRQDADTISALAAIRDNTKLDLIHDQEDFGAHFLTEKEIKQLDINQEYLTQVDVIAQKCNAELKYHQSLLPQYQTPNDESAKKYLWRVLVTQLKKLELNYDVYLERLKYEYKVITNMGFEDYFLIVSDLIHYAKTNDVMVGPGRGSSAGSLVSYLLGITTIDPIKFNLLFERFLNPERVTMPDIDIDFEDTRRERVIQYVQEKYGELHVSGIVTFGHLLARAVARDVGRIMGFDEVTLNEISSLIPHKLGITLDEAYQIDDFKKFVHRNHRHERWFSICKKLEGLPRHTSTHAAGIIINDHPLYEYAPLTKGDTGLLTQWTMTEAERIGLLKIDFLGLRNLSIIHQILTQVKKDLGINIDIEKIPFDNQKVFELLSQGDTTGIFQLESDGVRSVLKKLKPEHFEDIVAVTSLYRPGPMEEIPTYITRRHDPSKVQYLHPHLEPILKNTYGVIIYQEQIMQIASTFANFSYGEADILRRAMSKKNRAVLESERQHFIEGAKQNGYHEDISKQIFDLILKFADYGFPRAHAVSYSKIAYIMSFLKVHYPNYFYANILSNVIGSEKKTAQMIEEAKKQGITILPPNINESHWFYKPSQEGIYLSIGTIKGVGYQSVKVIVDERYQNGKFKDFFDFARRIPKRVKTRKLLEALILVGAFDAFGKTRSTLLQAIDQVLDGDLNIEQDGFLFDILTPKQMYEDKEELPDALISQYEKEYLGFYVSQHPVDKKFVAKQYLTIFKLSNAQNNKPILVQFDKVKQIRTKNGQNMAFVTLNDGIETLDGVIFPNQFKKYEELLSHNDLFIVSGKFDHRKQQRQLIINEIQTLATFEEQKLAFAKQIIIRNKSQIDMFEEMIKATKENANDVVLSFYDETIKQMTTLGYINQKDSMFNNFIQSFNPSDIRLI
>NZ_CP047794.1|WP_000058379.1|337029_338259_+|NAD-dependent-malic-enzyme-4
MSLRDEALEMHKRNQGKLEVKPNVKVTNKEELSLAYSPGVAEPCKDIYEDKRKVYDYTIKGNTVAVITDGTAVLGLGNIGPEASIPVMEGKAVLFKSFAGINGVPIALNTTDTEEIIKTVKLLEPNYGGINLEDISAPRCFEIEERLKKETNIPVFHDDQHGTAIVTIAGLVNALRVVNKDIAKIKVVLNGAGAAGIAIVKLLYAYGVRNMVMCDSRGAIFEGRSYGMNPTKDVVAKWTNKDKIEGSLEEVVKDADVFIGVSVANALSQDMVKSMADNPIIFAMANPNPEIIPDDAKAAGARVVGTGRSDYPNQINNVLAFPGIFRGALEVEATHINEEMKKAAVEAIADLIDSSELNEDYCIPGPFDKRVAPSVARNVAKAAMESGVARIEVDPQDVYDKTMKLTDLQ
>NZ_CP047794.1|WP_000471571.1|338453_339311_+|acetyl-CoA-carboxylase-carboxyltransferase-subunit-beta
MFKDFFNRTKKKKYLTVQDSKNNDVPAGIMTKCPKCKKIMYTKELAENLNVCFNCDHHIALTAYKRIEAISDEGSFTEFDKGMTSANPLDFPSYLEKIEKDQQKTGLKEAVVTGTAQLDGMKFGVAVMDSRFRMGSMGSVIGEKICRIIDYCTENRLPFILFSASGGARMQEGIISLMQMGKTSVSLKRHSDAGLLYISYLTHPTTGGVSASFASVGDINLSEPKALIGFAGRRVIEQTINEKLPDDFQTAEFLLEHGQLDKVVHRNDMRQTLSEILKIHQEVTK
>NZ_CP047794.1|WP_000883646.1|339310_340255_+|acetyl-CoA-carboxylase-carboxyltransferase-subunit-alpha
MLDFEKPLFEIRNKIESLKESQDKNDVDLQEEIDMLEASLERETKKIYTNLKPWDRVQIARLQERPTTLDYIPYIFDSFMELHGDRNFRDDPAMIGGIGFLNGRAVTVIGQQRGKDTKDNIYRNFGMAHPEGYRKALRLMKQAEKFNRPIFTFIDTKGAYPGKAAEERGQSESIATNLIEMASLKVPVIAIVIGEGGSGGALGIGIANKVLMLENSTYSVISPEGAAALLWKDSNLAKIAAETMKITAHDIKQLGIIDDVISEPLGGAHKDIEQQALAIKSAFVEQLDSLESLSRDEIANDRFEKFRNIGSYIE
>NZ_CP047794.1|WP_000717561.1|340523_341492_+|ATP-dependent-6-phosphofructokinase
MKKIAVLTSGGDSPGMNAAVRAVVRTAIYNEIEVYGVYHGYQGLLNDDIHKLELGSVGDTIQRGGTFLYSARCPEFKEQEVRKVAIENLRKRGIEGLVVIGGDGSYRGAQRISEECKEIQTIGIPGTIDNDINGTDFTIGFDTALNTIIGLVDKIRDTASSHARTFIIEAMGRDCGDLALWAGLSVGAETIVVPEVKTDIKEIADKIEQGIKRGKKHSIVLVAEGCMTAQDCQKELSQYINVDNRVSVLGHVQRGGSPTGADRVLASRLGGYAVDLLMQGETAKGVGIKNNKIVATSFDEIFDGKDHKFDYSLYELANKLSI
>NZ_CP047794.1|WP_160199092.1|341513_343271_+|pyruvate-kinase
MRKTKIVCTIGPASESEEMIEKLINAGMNVARLNFSHGSHEEHKGRIDTIRKVAKRLDKIVAILLDTKGPEIRTHNMKDGIIELERGNEVIVSMNEVEGTPEKFSVTYENLINDVQVGSYILLDDGLIELQVKDIDHAKKEVKCDILNSGELKNKKGVNLPGVRVSLPGITEKDAEDIRFGIEENVDFIAASFVRRPSDVLEIREILEEQKANISVFPKIENQEGIDNIAEILEVSDGLMVARGDMGVEIPPEKVPMVQKDLIRQCNKLGKPVITATQMLDSMQRNPRATRAEASDVANAIYDGTDAVMLSGETAAGLYPEEAVKTMRNIAVSAEAAQDYKKLLSDRTKLVETSLVNAIGISVAHTALNLNVKAIVAATESGSTARTISKYRPHSDIIAVTPSEETARQCSIVWGVQPVVKKGRKSTDALLNNAVATAVETGRVTNGDLIIITAGVPTGETGTTNMMKIHLVGDEIANGQGIGRGSVVGTTLVAETVKDLEGKDLSDKVIVTNSIDETFVPYVEKALGLITEENGITSPSAIVGLEKGIPTVVGVEKAVKNISNNMLVTIDAAQGKIFEGYANVL
>NZ_CP047794.1|WP_000818525.1|343620_344982_-|amino-acid-permease
MAEKLQRELSNRHIQLIAIGGAIGTGLFLGAGQTIALTGPSILLTYIIIGFMLFMFMRGLGEIIIQNTEFKSFADVTNTYIGPFAGFVTGWTYWFCWIITGMAEVTAVAKYVSFWFPEIPNWISALFCVLLLMSFNLLSARLFGELEFWFSIIKIATIIGLIVVGFVMILFAFKTQFGHASFTNLYEHGIFAKGASGFFMSFQMALFSFVGIEMIGVTAGETKDPVKTIPKAINSVPIRILIFYVGALAVIMSIIPWQQVDPDNSPFVKLFALIGIPFAAGLINFVVLTAAASSCNSGIFSNSRMLFGLSSQQQAPPNFSKTNKYGVPHVAIFASSALLLVAALLNYIFPDATKVFTYVTTISTVLFLVVWGLIIIAYINYSRKNPDLHKNATYKLLGGKYMGYLIFVFFIFVFGLLFINVDTRRAIYFIPIWFILLAFMYLRYKRIAAKSNK
>NZ_CP047794.1|WP_000829167.1|345329_346451_+|citrate-synthase
MAELQRGLEGVIAAETKISSIIESQLTYAGYDIDDLAENAQFEEVIFLLWNYRLPNEEELAHLKGKLNQYMTLNPRVYTHFEEYVTDHVHPMTALRTSLSYIAHFDPDAENESDENRYERAMRIQAKVASLVTAFARVRQDKEPLKPNPDLSYAANFLYMLRGELPTDIEVEAFNKALILHADHELNASAFTARCAVSSLSDMYSGIVAAVGSLKGPLHGGANEQVMTMLSEIGSIENVDAYLDEKFANKDKVMGFGHRVYKDGDPRAKYLREMSRQITKDAGREELFEMSVKMEKRMAEEKGLIPNVDFYSASVYHCMEIPHDLFTPIFAVSRSAGWIAHILEQYKDNRIMRPRAKYIGETNRKYIPLEERK
>NZ_CP047794.1|WP_000123175.1|346499_347768_+|NADP-dependent-isocitrate-dehydrogenase
MTAEKITQGTEGLNVPNEPIIPFIIGDGIGPDIWKAASRVIDAAVEKAYNGEKRIEWKEVLAGQKAFDTTGEWLPQETLDTIKEYLIAVKGPLTTPIGGGIRSLNVALRQELDLFTCLRPVRWFKGVPSPVKRPQDVDMVIFRENTEDIYAGIEFKEGTTEVKKVIDFLQNEMGATNIRFPETSGIGIKPVSKEGTERLVRAAIQYAIDNNRKSVTLVHKGNIMKFTEGSFKQWGYDLALTEFGDQVFTWQQYDEIVENEGRDAANAAQEKAEKEGKIIIKDSIADIFLQQILTRPAEHDVVATMNLNGDYISDALAAQVGGIGIAPGANINYETGHAIFEATHGTAPKYAGLNKVNPSSVILSSVLMLEHLGWQEAADKITDSIEDTIASKVVTYDFARLMDGAEEVSTSAFADELIKNLK

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Crispr_ID: NZ_CP047794_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP047794_2

1070088-1070184

Orphan

Consensus_repeat	Method
CCTTACAACTTTTAGTTGTTAGGGGCTTTTATGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP047794_2

>merge|NZ_CP047794|2|1070088-1070184|CRISPRCasFinder
CCTTACAACTTTTAGTTGTTAGGGGCTTTTATGCATGCGCTCAGCGCAAGTATCCCTCTTTTACCTTACAACTTTTAGTTGTTAGGGGCTTTTATGC

>NZ_CP047794|2|2|1070088-1070184|CRISPRCasFinder
CCTTACAACTTTTAGTTGTTAGGGGCTTTTATGC	ATGCGCTCAGCGCAAGTATCCCTCTTTTA
CCTTACAACTTTTAGTTGTTAGGGGCTTTTATGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP047794.1\|WP_031927754.1\|1073717_1074965_-\|phosphoribosylamine--glycine-ligase	unknown	unknown	gnl\|CDD\|237507
NZ_CP047794.1\|WP_000709282.1\|1074986_1076465_-\|bifunctional-phosphoribosylaminoimidazolecarboxamide-formyltransferase/IMP-cyclohydrolase	unknown	unknown	gnl\|CDD\|234854
NZ_CP047794.1\|WP_000273259.1\|1072645_1073452_+\|energy-coupling-factor-transporter-transmembrane-protein-EcfT	unknown	unknown	gnl\|CDD\|223692
NZ_CP047794.1\|WP_000032747.1\|1079533_1081723_-\|phosphoribosylformylglycinamidine-synthase-subunit-PurL	unknown	unknown	gnl\|CDD\|234921
NZ_CP047794.1\|WP_000666799.1\|1081715_1082387_-\|phosphoribosylformylglycinamidine-synthase-subunit-PurQ	unknown	unknown	gnl\|CDD\|235140
NZ_CP047794.1\|WP_000030808.1\|1077048_1078077_-\|phosphoribosylformylglycinamidine-cyclo-ligase	unknown	unknown	gnl\|CDD\|235439
NZ_CP047794.1\|WP_001289618.1\|1063626_1063860_+\|glutaredoxin-family-protein	unknown	unknown	gnl\|CDD\|239274
NZ_CP047794.1\|WP_031927757.1\|1064096_1065815_-\|phosphoenolpyruvate--protein-phosphotransferase	unknown	unknown	gnl\|CDD\|224006
NZ_CP047794.1\|WP_000437472.1\|1065817_1066084_-\|phosphocarrier-protein-HPr	unknown	unknown	gnl\|CDD\|237503
NZ_CP047794.1\|WP_000505962.1\|1066237_1066780_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|368297
NZ_CP047794.1\|WP_000921977.1\|1071252_1072653_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|213192
NZ_CP047794.1\|WP_047213340.1\|1066833_1068072_-\|class-I-SAM-dependent-rRNA-methyltransferase	unknown	unknown	gnl\|CDD\|224017
NZ_CP047794.1\|WP_000033477.1\|1070661_1071237_+\|ECF-transporter-S-component	unknown	unknown	gnl\|CDD\|227065
NZ_CP047794.1\|WP_000638453.1\|1061051_1062071_-\|cytochrome-d-ubiquinol-oxidase-subunit-II	unknown	unknown	gnl\|CDD\|224213
NZ_CP047794.1\|WP_000381852.1\|1062067_1063429_-\|cytochrome-ubiquinol-oxidase-subunit-I	unknown	unknown	gnl\|CDD\|376587
NZ_CP047794.1\|WP_000848351.1\|1082388_1082652_-\|phosphoribosylformylglycinamidine-synthase-subunit-PurS	unknown	unknown	gnl\|CDD\|224741
NZ_CP047794.1\|WP_031927753.1\|1076479_1077046_-\|phosphoribosylglycinamide-formyltransferase	unknown	unknown	gnl\|CDD\|223376
NZ_CP047794.1\|WP_000009069.1\|1068496_1069792_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP047794.1\|WP_000514290.1\|1060256_1060919_-\|TrkA-family-potassium-uptake-protein	unknown	unknown	gnl\|CDD\|223643
NZ_CP047794.1\|WP_000064214.1\|1069943_1070078_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP047794.1\|WP_031927754.1\|1073717_1074965_-\|phosphoribosylamine--glycine-ligase	gnl\|CDD\|237507	PRK13790, PRK13790, phosphoribosylamine--glycine ligase; Provisional.	0
NZ_CP047794.1\|WP_000709282.1\|1074986_1076465_-\|bifunctional-phosphoribosylaminoimidazolecarboxamide-formyltransferase/IMP-cyclohydrolase	gnl\|CDD\|234854	PRK00881, purH, bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; Provisional.	0
NZ_CP047794.1\|WP_031927757.1\|1064096_1065815_-\|phosphoenolpyruvate--protein-phosphotransferase	gnl\|CDD\|224006	COG1080, PtsA, Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria) [Carbohydrate transport and metabolism].	0
NZ_CP047794.1\|WP_000032747.1\|1079533_1081723_-\|phosphoribosylformylglycinamidine-synthase-subunit-PurL	gnl\|CDD\|234921	PRK01213, PRK01213, phosphoribosylformylglycinamidine synthase subunit PurL.	0
NZ_CP047794.1\|WP_000666799.1\|1081715_1082387_-\|phosphoribosylformylglycinamidine-synthase-subunit-PurQ	gnl\|CDD\|235140	PRK03619, PRK03619, phosphoribosylformylglycinamidine synthase subunit PurQ.	1.77638e-140
NZ_CP047794.1\|WP_000030808.1\|1077048_1078077_-\|phosphoribosylformylglycinamidine-cyclo-ligase	gnl\|CDD\|235439	PRK05385, PRK05385, phosphoribosylaminoimidazole synthetase; Provisional.	0
NZ_CP047794.1\|WP_001289618.1\|1063626_1063860_+\|glutaredoxin-family-protein	gnl\|CDD\|239274	cd02976, NrdH, NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, could be a mechanism for regulating the oxidation state of the protein.	1.21197e-16
NZ_CP047794.1\|WP_000273259.1\|1072645_1073452_+\|energy-coupling-factor-transporter-transmembrane-protein-EcfT	gnl\|CDD\|223692	COG0619, CbiQ, ABC-type cobalt transport system, permease component CbiQ and related transporters [Inorganic ion transport and metabolism].	1.09792e-29
NZ_CP047794.1\|WP_000505962.1\|1066237_1066780_-\|hypothetical-protein	gnl\|CDD\|368297	pfam05128, DUF697, Domain of unknown function (DUF697). Family of bacterial hypothetical proteins that is sometimes associated with GTPase domains.	0.00760449
NZ_CP047794.1\|WP_000921977.1\|1071252_1072653_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|213192	cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system. Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.	9.64258e-65
NZ_CP047794.1\|WP_047213340.1\|1066833_1068072_-\|class-I-SAM-dependent-rRNA-methyltransferase	gnl\|CDD\|224017	COG1092, COG1092, Predicted SAM-dependent methyltransferases [General function prediction only].	6.42628e-143
NZ_CP047794.1\|WP_000033477.1\|1070661_1071237_+\|ECF-transporter-S-component	gnl\|CDD\|227065	COG4721, COG4721, ABC-type cobalt transport system, predicted permease component [Inorganic ion transport and metabolism].	4.34592e-70
NZ_CP047794.1\|WP_000638453.1\|1061051_1062071_-\|cytochrome-d-ubiquinol-oxidase-subunit-II	gnl\|CDD\|224213	COG1294, AppB, Cytochrome bd-type quinol oxidase, subunit 2 [Energy production and conversion].	1.67944e-76
NZ_CP047794.1\|WP_000381852.1\|1062067_1063429_-\|cytochrome-ubiquinol-oxidase-subunit-I	gnl\|CDD\|376587	pfam01654, Cyt_bd_oxida_I, Cytochrome bd terminal oxidase subunit I. This family are the alternative oxidases found in many bacteria which oxidize ubiquinol and reduce oxygen as part of the electron transport chain. This family is the subunit I of the oxidase E. coli has two copies of the oxidase, bo and bd', both of which are represented here In some nitrogen fixing bacteria, e.g. Klebsiella pneumoniae this oxidase is responsible for removing oxygen in microaerobic conditions, making the oxidase required for nitrogen fixation. This subunit binds a single b-haem, through ligands at His186 and Met393 (using SW:P11026 numbering). In addition His19 is a ligand for the haem b found in subunit II.	1.81103e-165
NZ_CP047794.1\|WP_000848351.1\|1082388_1082652_-\|phosphoribosylformylglycinamidine-synthase-subunit-PurS	gnl\|CDD\|224741	COG1828, PurS, Phosphoribosylformylglycinamidine (FGAM) synthase, PurS component [Nucleotide transport and metabolism].	2.06309e-30
NZ_CP047794.1\|WP_031927753.1\|1076479_1077046_-\|phosphoribosylglycinamide-formyltransferase	gnl\|CDD\|223376	COG0299, PurN, Folate-dependent phosphoribosylglycinamide formyltransferase PurN [Nucleotide transport and metabolism].	1.64347e-91
NZ_CP047794.1\|WP_000514290.1\|1060256_1060919_-\|TrkA-family-potassium-uptake-protein	gnl\|CDD\|223643	COG0569, TrkA, K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism].	4.35421e-66
NZ_CP047794.1\|WP_000437472.1\|1065817_1066084_-\|phosphocarrier-protein-HPr	gnl\|CDD\|237503	PRK13780, PRK13780, phosphocarrier protein HPr; Provisional.	2.44795e-51

>NZ_CP047794.1|WP_000064214.1|1069943_1070078_+|hypothetical-protein
MSNENQNKKAAEKAKEVEEKLKDKKEEKTEDINQTKQDIQDTLN
>NZ_CP047794.1|WP_000009069.1|1068496_1069792_-|hypothetical-protein
MSFLRKHAEIIFSYLIGIVSLFTGLIILINLPLIKQLNGGKKVDTHVHNVWEFLNAFFSEIIKVMSRFIGNFPIVSAIVIIIFGILVMLIGHTLLRTIKYDYDISIFFLVIGIMYFIITLILMTQVYGFFAVIFIIPFTIHIGYIVYKDELNQENVKNHFMWIIVSYGISYLITQIALYGRIDANEIESIDILSVNAFFIIMWLLGQMAIWNFLFLRRALPLTKQELGEEEPELSRTSKGNVTNQTKIHLKQLQDKTTEYARKTRRSVDLDKIRAKRDKFKKKVNDIIDIQEDDIPDWMRKPKWVKPMYVELFCGVVIFLFTFLEFNNRNALFVSGDWKLSQTQYVIEWVTLLILLFIIIAYIATTLTFHLKGKFYYLQLFMGSILFFKLLTEFINIMIHGLLLSVFITPTLLLMLLAIIISYSLQLRERP
>NZ_CP047794.1|WP_047213340.1|1066833_1068072_-|class-I-SAM-dependent-rRNA-methyltransferase
MKIATLNKGKETKYFNGYPLIEEEDIYSQDHLKEEDIYSQDHLKEEDIYSQDHLKEGDIFQIVTDKSQYVATAYVGRQHKGLGWVLTYDKAQEINTAFFVKLFKTALAERDYYFNIDGTNAFRLFNAEGDGVGGLTIDNYDGHLLIQWYSKGIYKFKYAILEAVRKVFDYKSIYEKVRFKDSEYSGGFVEGDAPEFPIVIEENFTFYNVDLEDGLMTGIFLDQKEVRKKLRDQYAKERHVLNLFSYTGAFSVIAASEASSTTSVDLANRSRSLTEENFGLNAIDPKSQYIYVMDTFDFYKYAARHGHSYDTIVIDPPSFARNKKRTFSVQKDYDKLINGALNILSSEGTLLLCTNASVYPLKQFKNTIKKTLEESGVDYELTEVMGLPKDFKTHPHYKPSKYLKAVFVNIRH
>NZ_CP047794.1|WP_000505962.1|1066237_1066780_-|hypothetical-protein
MGFKNNLTSNLTNKIGNSVFKIENINEKGAMPTTIKELNERRQRAEAIVKRKSLMSSTMSVVPIPGLDFGVDLKLMKDIIEDVNKIYGLDHKQVNSLGDDVKERVMSAAAIQGSQFIGKRISSAFLKIVIRDVAKRTAAKQTKWFPVVGQAVSASISYYFMNKIGKDHIQKCENVIKNVM
>NZ_CP047794.1|WP_000437472.1|1065817_1066084_-|phosphocarrier-protein-HPr
MEQNSYVIIDETGIHARPATMLVQTASKFDSDIQLEYNGKKVNLKSIMGVMSLGVGKDAEITIYADGSDESDAIQAISDVLSKEGLTK
>NZ_CP047794.1|WP_031927757.1|1064096_1065815_-|phosphoenolpyruvate--protein-phosphotransferase
MSKLIKGIAASDGVAIAKAYLLVEPDLTFDKNEKVTDVEGEVAKFNGAIEASKVELTKIRNNAEVQLGADKAAIFDAHLLVLDDPELIQPIQDKIKNENANAATALTDVTTQFVTIFESMDNEYMKERAADIRDVSKRVLSHILGVELPNPSMIDESVVIVGNDLTPSDTAQLNKEFVQGFATNIGGRTSHSAIMSRSLEIPAIVGTKSITQEVKQGDMIIVDGLNGDVIVNPTEDELIAYQDKRERYFADKKELQKLRDADTVTVDGVHAELAANIGTPNDLPGVIENGAQGIGLYRTEFLYMGRDQMPTEEEQFEAYKEVLEAMNGKRVVVRTLDIGGDKELSYLNLPEEMNPFLGYRAIRLCLAQQDIFRPQLRALLRASVYGKLNIMFPMVATINEFREAKAILLEEKENLKNEGHDISDDIELGIMVEIPATAALADVFAKEVDFFSIGTNDLIQYTLAADRMSERVSYLYQPYNPSILRLVKQVIEASHKEGKWTGMCGEMAGDETAIPLLLGLGLDEFSMSATSILKARRQINGLSKNEMTELANRAVDCATQEEVIELVNNYVK
>NZ_CP047794.1|WP_001289618.1|1063626_1063860_+|glutaredoxin-family-protein
MSEIIVYTQNDCPPCTFVKNYLNEHQIDFEERNINNQQYRNEMIDFDAFSTPFILLNGNPMYHVDLDEINKVLNIQD
>NZ_CP047794.1|WP_000381852.1|1062067_1063429_-|cytochrome-ubiquinol-oxidase-subunit-I
MDTVEISRFLTAMTLAVHIIFATIGVGMPLMFAIAEFLGIRKNDLQYIAMAKRWAKAYTITVAVGVVTGTIIGLQLSLIWPTFMEMGGHVIALPLFMETFAFFFEAIFLSIYLYTWDRFKNKWTHFLISIPVIIGGSFSAFFITSVNSFMNTPAGFELKNGKMVNVQPIEAMFNPSFIVRSFHVITTAGMTMAFVIASIAAFKLLRNRQPKDTVYHKKALKMSMIVGFFSTLLSMLAGDLSAKFLHKFQPEKLAAYEWHFDTSSHAKLLLFGVLDEKTQQVKGAIELPGLLSFLADNSVKTKVQGLNDFPKSLHPPMIVHYFFDLMVTMGILCFVISGVYVLTLMFKKLRKFSTHKWMLYGILLTGPASMLAIEFGWFLTEMGRQPWIVRGYMRVAEAATQAGGITFVTILFGVLYIILMYTCAYVLIRMFKNKPAYEDVNRLAKKQGGEIEK
>NZ_CP047794.1|WP_000638453.1|1061051_1062071_-|cytochrome-d-ubiquinol-oxidase-subunit-II
MIYAFIGITVLWLFLFCYIIIASIDFGAGFFALHSKLTGDEKKINHLISRYLNPVWEVTNVFFVFFFVGFVGFFPESIKYLGTVLLIPGSIALIMISLRNSFYAFENYGQDTKLAWMIMYGVSGLLIPASLSTALTITEGGYINVRNNVIDLDWVQLLLSPFAWSVVFLAIISVLYISSGFLTYYAKKANDEPAYNLTRQWHIFLGPPMIIICLFVFLSLRIQNSEHFYSAVFDYWWMFAISFLFFALASLLTFFKKKHGLAFVFVILQMMFAFFGYGISKLPYLLYPFVKITDAYVNPEMGWTLVIVFILGLLLLLPSLILLLRLFVFDKEYVEGKKS
>NZ_CP047794.1|WP_000514290.1|1060256_1060919_-|TrkA-family-potassium-uptake-protein
MGKEYVVIGLGRFGGSIVRELNALDMDVMAIDHDENRVNEYSDIATHAVVADTTDEAVMKSLGIRNFDHVIVAIGENIQSSTLTTLILKELGVKKVTAKAQNDYHAKILNKIGADTVVHPERDMGRRIAHNVASASVLDYLELADEHSIVELKATEKMAGQSIIDLDIRAQYGINIIAIKRGKEFIISPNPNINLEIGDILIMIGHDNDLNRFEKNIATR
>NZ_CP047794.1|WP_000033477.1|1070661_1071237_+|ECF-transporter-S-component
MSKGLKLSEILVTVLISVVFAVIYNLWWFVYNGVQATGLHLEQLTNGVWFMAAIVCYLIIPKPGIALLAEFAAGAGETIIMGRFDIPTIVYAFIQGLACELVFAIFKYQSRSVMVAMLAGFCTAIAAFPIDYFYGYLNEVAGWNLTLFIVFRLISGAVVAGVLSYLLVKALDKTGVTKLFRPAAKEDYDNL
>NZ_CP047794.1|WP_000921977.1|1071252_1072653_+|ABC-transporter-ATP-binding-protein
MLKVSDLRLKYPSGQRKIFDHLNITIQDKEKVLLLGPSGCGKSTLLNVLSGIVPNLIELPMKYDELIVDPLSGVIFQDPDSQFCMPKVYEELAFVLENRQVPREDMDALIINALNMVNLNVTPETYIKDLSGGMKQKLAIVETILQQSKTLFLDEPTAMLDVQATEDLWTKLIELWENQTVVIVEHKVKHIWNHVDRVILMDYNGNIIADECPEIILQKYVHLLSEYGVWHPRAWEFAPSRVDFPTANSHLLQFKNGRIIRGKSTLLSFSDLEIGLGEWITITGANGSGKTTLLESIMQLIKYQGDVYFENQRLTKIKHAAKHMYLVYQNPELQFITNSVYDEINIHFNHLSKDQSDDETMQLLKLLDLENVKDQHPYELSIGQKRRLSVATALSSKADIIFLDEPTFGLDSHNTFQLIKLFQKRINLGQSIVMVTHDDEIIERYPSRRLKISDGALLDCDGDTNV
>NZ_CP047794.1|WP_000273259.1|1072645_1073452_+|energy-coupling-factor-transporter-transmembrane-protein-EcfT
MYEQWKVRQSFVDDVNIITKLFLGIILFFFIIFVHNFDFMLYITILMLVFLLMFNGTQFKITAIFITISIGFALLSSLFMILYGNGSHTILKFGFIHITTESLVRGLHVSLRTIAISFFGILIALTSQVVMIFYSLMQHLKVKSKVAYAFMAAIRMIPLMISSLIQLRRSLKMRYQMIDASNYRGLKRFKHLIIPLLSQNIRKAHQLSVAMESKGFRDGPRTYYYNVPFSYKDVIFIIVLIAIITLAYYCSINLPITGIDDVRLGRVG
>NZ_CP047794.1|WP_031927754.1|1073717_1074965_-|phosphoribosylamine--glycine-ligase
MNVLVIGAGGREHALAYKLNQSNLVKQVFVIPGNEAMTPIAEVHTEISESDHQGILDFAKQQDVDWVVIGPEQPLIDGLADILRANGFKVFGPNKQAAQIEGSKLFAKKIMEKYNIPTADYKEVERKKDALTYIENCELPVVVKKDGLAAGKGVIIADTIEAARSAIEIMYGDEEEGTVVFETFLEGEEFSLMTFVNGDLAVPFDCIAQDHKRAFDHDEGPNTGGMGAYCPVPHISDDVLKLTNETIAQPIAKAMLNEGYQFFGVLYIGAILTKDGPKVIEFNARFGDPEAQVLLSRMESDLMQHIIDLDEGKRTEFKWKNESIVGVMLASKGYPDAYEKGHKVSGFDLNENYFVSGLKKQGDTFVTSGGRVILAIGKGDNVHDAQRDAYEKVSQIQSDHLFYRHDIANKALQLK
>NZ_CP047794.1|WP_000709282.1|1074986_1076465_-|bifunctional-phosphoribosylaminoimidazolecarboxamide-formyltransferase/IMP-cyclohydrolase
MKKAILSVSNKTGIVEFAKALTQLNYELYSTGGTKRILDEANVPVRSVSDLTHFPEIMDGRVKTLHPAVHGGILADRNKPQHLNELSEQHIDLIDMVVVNLYPFQQTVANPDVTMDEAIENIDIGGPTMLRAAAKNYKHVTTIVHPADYQEVLTRLRNDSLDESYRQSLMIKVFEHTAEYDEAIVRFFKGDKETLRYGENPQQSAYFVRTSNAKHTIAGAKQLHGKQLSYNNIKDADATLALVKKFDTPAAVAVKHMNPCGVGIGDTIEQAFQHAYEADSQSIFGGIVALNRAVTPELAEQLHSIFLEVIIAPKFTDEALDILKQKKNVRLLEIDMTIDSNEEEFVSVSGGYLVQDKDNYVVPKEEMKVVTEVAPTDEQWEAMLLGWKVVPSVKSNAIILSNNKQTVGIGAGQMNRVGAAKIALERAIEINDHVALVSDGFFPMGDTVELAAQHGIKAIIQPGGSIKDQDSIDMANKHGIAMVVTGTRHFKH
>NZ_CP047794.1|WP_031927753.1|1076479_1077046_-|phosphoribosylglycinamide-formyltransferase
MVKIAIFASGSGSNFENIVEHVESGKLENIEVTALYTDHQNAFCIDRAKKHDIPVYINEPKKFDSKAAYEQHLVTLLNEDKVEWIILAGYMRLIGPDLLASFEGKILNIHPSLLPKYKGIDAIGQAYHSGDTITGSTVHYVDSGMDTGEIIEQRQCDIRPDDSKEQLEEKVKKLEYELYPSVIAKIVK
>NZ_CP047794.1|WP_000030808.1|1077048_1078077_-|phosphoribosylformylglycinamidine-cyclo-ligase
MSKAYEQSGVNIHAGYEAVERMSSHVKRTMRKEVIGGLGGFGATFDLSQLNMTAPVLVSGTDGVGTKLKLAIDYGKHDSIGIDAVAMCVNDILTTGAEPLYFLDYIATNKVVPEVIEQIVKGISDACVETNTALIGGETAEMGEMYHEGEYDVAGFAVGAVEKDDYVDGSEVEEGQVVIGLASSGIHSNGYSLVRKLINESGIELASNFDNRPFIDVFLEPTKLYVKPVLALKKEVSIKAMNHITGGGFYENIPRALPAGYAARIDTTSFPTPKIFDWLQQQGNIDTNEMYNIFNMGIGYTVIVDEKDVSRALKILAEQNVEAYQIGHIVKNESTAIELLGV
>NZ_CP047794.1|WP_000032747.1|1079533_1081723_-|phosphoribosylformylglycinamidine-synthase-subunit-PurL
MSKFIEPSVEEIKLEKVYQDMGLSDQEYEKVCDILGRQPNFTETGIFSVMWSEHCSYKHSKPFLKQFPTSGEHVLMGPGEGAGVVDIGDNQAVVFKVESHNHPSAIEPYQGAATGVGGIIRDIVSIGARPINLLNSLRFGELDNKQNQRLLKGVVKGIGGYGNCIGIPTTAGEIEFDERYDGNPLVNAMCVGVINHDMIQKGTAKGVGNSVIYVGLKTGRDGIHGATFASEELTEESESKRPSVQIGDPFVGKKLMEATLEAITFDELVGIQDMGAAGLTSSSSEMAAKGGSGLHLRLEQVPTREPGISPYEMMLSETQERMLLVVEKGTEQKFLDLFDKHELDSAVIGEVTDTNRFVLTYDDEVYADIPVEPLADEAPVYILEGEEKNYNTSKNDYTHIDVKDTFFKLLKHPTIASKHYLYDQYDQQVGANTIIKPGLQASVVRVEGTNKAIASTIDGEARYVYNNPYEGGKMVVAEAYRNLIAVGATPLAMTDCLNYGSPEKKEIYQQLIDSTKGMAEACDILKTPVVSGNVSLYNETKGTSIFPTPVVGMVGLIENVNYLNDFEPQVGDKLYLIGDTKDDFGGSQLEKLIYGKVNHEFESLDLSSEVEKGESIKTAIREGVLSHVQTVGKGGLLITLAKLSAHYGLGLKSSIDITNAQLFSETQGRYVVSVKSGKTLNIDNAIEIGLLTDSDNFKVTTPYTEISENVSDIKQIWEGAIAQCLTTQD
>NZ_CP047794.1|WP_000666799.1|1081715_1082387_-|phosphoribosylformylglycinamidine-synthase-subunit-PurQ
MKFAVLVFPGSNCDRDMFNAAIKSGVEAEYVDYRETSLSGFDGVLIPGGFSFGDYLRSGAMASVAPIISEVKRLAAEGKPVLGVCNGFQILTEIGLLPGALLHNDSHLFISRNEELEIVNNQTAFTNLYEQGEKVIYPVAHGEGHYYCTDEIYQQLKANNQIILKYVNNPNGSYDDIAGIVNEKGNVCGMMPHPERALETLLGTDSGVKLFEAMVKSWREQHV
>NZ_CP047794.1|WP_000848351.1|1082388_1082652_-|phosphoribosylformylglycinamidine-synthase-subunit-PurS
MKTIELHITLQPQVLDTQGQTLTRAVHDLGYAQVNDIRVGKVLYMTVDEVSDEKVHNIITTLSEKLFANTVIEEYSYKVLEDEKENA

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Crispr_ID: NZ_CP047794_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP047794_3

1255182-1255266

Orphan

Consensus_repeat	Method
TGCAAGTTGGGGTGGGGCCCCAACATA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP047794_3

>merge|NZ_CP047794|3|1255182-1255266|CRISPRCasFinder
TGCAAGTTGGGGTGGGGCCCCAACATAGAAGCTGGCGGAAAGTCAGCTTACAATAATGTGCAAGTTGGGGTGGGCCCCAACATAA

>NZ_CP047794|3|3|1255182-1255266|CRISPRCasFinder
TGCAAGTTGGGGTGGGGCCCCAACATA	GAAGCTGGCGGAAAGTCAGCTTACAATAATG
TGCAAGTTGGGGTGGGCCCCAACATAA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP047794.1\|WP_000589549.1\|1257066_1257423_-\|arsenate-reductase-family-protein	unknown	unknown	gnl\|CDD\|239334
NZ_CP047794.1\|WP_000569881.1\|1260343_1260838_+\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|372596
NZ_CP047794.1\|WP_000168845.1\|1248274_1249036_-\|Fe-S-cluster-assembly-ATPase-SufC	unknown	unknown	gnl\|CDD\|223473
NZ_CP047794.1\|WP_106459731.1\|1255471_1256350_-\|DUF1963-domain-containing-protein	unknown	unknown	gnl\|CDD\|226395
NZ_CP047794.1\|WP_001065801.1\|1254206_1254503_-\|thioredoxin-family-protein	unknown	unknown	gnl\|CDD\|239245
NZ_CP047794.1\|WP_000807671.1\|1245513_1246755_-\|cysteine-desulfurase	unknown	unknown	gnl\|CDD\|131034
NZ_CP047794.1\|WP_047213258.1\|1252931_1253957_-\|methionine-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224058
NZ_CP047794.1\|WP_047213256.1\|1260994_1261612_+\|amino-acid-transporter	unknown	unknown	gnl\|CDD\|224198
NZ_CP047794.1\|WP_000752917.1\|1250448_1250643_-\|CsbD-family-protein	unknown	unknown	gnl\|CDD\|225777
NZ_CP047794.1\|WP_000290491.1\|1256528_1256909_-\|glycine-cleavage-system-protein-GcvH	unknown	unknown	gnl\|CDD\|234918
NZ_CP047794.1\|WP_001147955.1\|1257566_1257887_+\|thioredoxin-family-protein	unknown	unknown	gnl\|CDD\|239245
NZ_CP047794.1\|WP_000205572.1\|1246869_1248177_-\|Fe-S-cluster-assembly-protein-SufD	unknown	unknown	gnl\|CDD\|223791
NZ_CP047794.1\|WP_000662306.1\|1256351_1256465_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP047794.1\|WP_106459732.1\|1254495_1254882_-\|topiosmerase	unknown	unknown	gnl\|CDD\|224572
NZ_CP047794.1\|WP_031927537.1\|1259522_1259945_+\|organic-hydroperoxide-resistance-protein	unknown	unknown	gnl\|CDD\|274649
NZ_CP047794.1\|WP_031927536.1\|1258658_1259375_-\|type-I-3-dehydroquinate-dehydratase	unknown	unknown	gnl\|CDD\|184156
NZ_CP047794.1\|WP_001183850.1\|1249363_1250215_+\|DUF368-domain-containing-protein	unknown	unknown	gnl\|CDD\|224946
NZ_CP047794.1\|WP_000520233.1\|1252243_1252939_-\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224922
NZ_CP047794.1\|WP_000732334.1\|1251404_1252226_-\|MetQ/NlpA-family-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|224381
NZ_CP047794.1\|WP_000422908.1\|1258036_1258576_-\|nitroreductase	unknown	unknown	gnl\|CDD\|380312

Protein	Function_ID	Function_description	E-value
NZ_CP047794.1\|WP_000589549.1\|1257066_1257423_-\|arsenate-reductase-family-protein	gnl\|CDD\|239334	cd03036, ArsC_like, Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.	1.06191e-56
NZ_CP047794.1\|WP_000569881.1\|1260343_1260838_+\|GNAT-family-N-acetyltransferase	gnl\|CDD\|372596	pfam13420, Acetyltransf_4, Acetyltransferase (GNAT) domain.	4.38838e-47
NZ_CP047794.1\|WP_000168845.1\|1248274_1249036_-\|Fe-S-cluster-assembly-ATPase-SufC	gnl\|CDD\|223473	COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones].	1.29081e-150
NZ_CP047794.1\|WP_106459731.1\|1255471_1256350_-\|DUF1963-domain-containing-protein	gnl\|CDD\|226395	COG3878, COG3878, Uncharacterized protein conserved in bacteria [Function unknown].	1.61092e-75
NZ_CP047794.1\|WP_001065801.1\|1254206_1254503_-\|thioredoxin-family-protein	gnl\|CDD\|239245	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functional TRXs have been reported in most organisms; in eukaryotes, they are located in the cytoplasm and the mitochondria. Higher plants contain more types (at least 20 TRX genes have been detected in the genome of Arabidopsis thaliana), two of which (types f amd m) are located in the same compartment, the chloroplast. Also included in the alignment are TRX-like domains which show sequence homology to TRX but do not contain the redox active CXXC motif. Group II proteins, in addition to either a redox active TRX or a TRX-like domain, also contain additional domains, which may or may not possess homology to known proteins.	7.01368e-14
NZ_CP047794.1\|WP_000807671.1\|1245513_1246755_-\|cysteine-desulfurase	gnl\|CDD\|131034	TIGR01979, Probable_cysteine_desulfurase, cysteine desulfurases, SufSfamily. This model represents a subfamily of NifS-related cysteine desulfurases involved in FeS cluster formation needed for nitrogen fixation among other vital functions. Many cysteine desulfurases are also active as selenocysteine lyase and/or cysteine sulfinate desulfinase. This subfamily is associated with the six-gene SUF system described in E. coli and Erwinia as an FeS cluster formation system during oxidative stress. The active site Cys is this subfamily resembles GHHC with one or both His conserved. [Biosynthesis of cofactors, prosthetic groups, and carriers, Other].	0
NZ_CP047794.1\|WP_047213258.1\|1252931_1253957_-\|methionine-ABC-transporter-ATP-binding-protein	gnl\|CDD\|224058	COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism].	4.55049e-170
NZ_CP047794.1\|WP_047213256.1\|1260994_1261612_+\|amino-acid-transporter	gnl\|CDD\|224198	COG1279, COG1279, Lysine efflux permease [General function prediction only].	2.70917e-61
NZ_CP047794.1\|WP_000752917.1\|1250448_1250643_-\|CsbD-family-protein	gnl\|CDD\|225777	COG3237, COG3237, Uncharacterized protein conserved in bacteria [Function unknown].	5.95583e-07
NZ_CP047794.1\|WP_000290491.1\|1256528_1256909_-\|glycine-cleavage-system-protein-GcvH	gnl\|CDD\|234918	PRK01202, PRK01202, glycine cleavage system protein GcvH.	9.01516e-70
NZ_CP047794.1\|WP_001147955.1\|1257566_1257887_+\|thioredoxin-family-protein	gnl\|CDD\|239245	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functional TRXs have been reported in most organisms; in eukaryotes, they are located in the cytoplasm and the mitochondria. Higher plants contain more types (at least 20 TRX genes have been detected in the genome of Arabidopsis thaliana), two of which (types f amd m) are located in the same compartment, the chloroplast. Also included in the alignment are TRX-like domains which show sequence homology to TRX but do not contain the redox active CXXC motif. Group II proteins, in addition to either a redox active TRX or a TRX-like domain, also contain additional domains, which may or may not possess homology to known proteins.	3.63533e-24
NZ_CP047794.1\|WP_000205572.1\|1246869_1248177_-\|Fe-S-cluster-assembly-protein-SufD	gnl\|CDD\|223791	COG0719, SufB, Cysteine desulfurase activator SufB [Posttranslational modification, protein turnover, chaperones].	8.11734e-136
NZ_CP047794.1\|WP_106459732.1\|1254495_1254882_-\|topiosmerase	gnl\|CDD\|224572	COG1658, COG1658, Small primase-like proteins (Toprim domain) [DNA replication, recombination, and repair].	3.90127e-36
NZ_CP047794.1\|WP_031927537.1\|1259522_1259945_+\|organic-hydroperoxide-resistance-protein	gnl\|CDD\|274649	TIGR03561, organ_hyd_perox, peroxiredoxin, Ohr subfamily. pfam02566, OsmC-like protein, contains several deeply split clades of homologous proteins. The clade modeled here includes the protein Ohr, or organic hydroperoxide resistance protein. [Cellular processes, Detoxification].	1.04925e-60
NZ_CP047794.1\|WP_031927536.1\|1258658_1259375_-\|type-I-3-dehydroquinate-dehydratase	gnl\|CDD\|184156	PRK13575, PRK13575, type I 3-dehydroquinate dehydratase.	2.15062e-147
NZ_CP047794.1\|WP_001183850.1\|1249363_1250215_+\|DUF368-domain-containing-protein	gnl\|CDD\|224946	COG2035, COG2035, Predicted membrane protein [Function unknown].	1.31099e-76
NZ_CP047794.1\|WP_000520233.1\|1252243_1252939_-\|ABC-transporter-permease	gnl\|CDD\|224922	COG2011, AbcD, ABC-type metal ion transport system, permease component [Inorganic ion transport and metabolism].	9.67625e-100
NZ_CP047794.1\|WP_000732334.1\|1251404_1252226_-\|MetQ/NlpA-family-ABC-transporter-substrate-binding-protein	gnl\|CDD\|224381	COG1464, NlpA, ABC-type metal ion transport system, periplasmic component/surface antigen [Inorganic ion transport and metabolism].	9.86321e-113
NZ_CP047794.1\|WP_000422908.1\|1258036_1258576_-\|nitroreductase	gnl\|CDD\|380312	cd02135, YdjA-like, nitroreductase family protein similar to Escherichia coli YdjA. A subfamily of the nitroreductase family containing uncharacterized proteins that are similar to nitroreductase YdjA from Escherichia coli. Nitroreductase catalyzes the reduction of nitroaromatic compounds such as nitrotoluenes, nitrofurans and nitroimidazoles. This process requires NAD(P)H as electron donor in an obligatory two-electron transfer and uses FMN as cofactor. The enzyme is typically a homodimer. Members of this family are also called NADH dehydrogenase, oxygen-insensitive NAD(P)H nitrogenase or dihydropteridine reductase.	2.10032e-49

>NZ_CP047794.1|WP_106459732.1|1254495_1254882_-|topiosmerase
MAIVNKVTIVEGKSDKKRVQQVIAEPVNIICTHGTMSIDKLDDMIESLYDKQVFVLADSDDEGDRIRNWFKRYLSECEHIFIDKTYCQVANCPKQYLAHVLSKHGFTCKKETPSLPNINNERLVLVNE
>NZ_CP047794.1|WP_001065801.1|1254206_1254503_-|thioredoxin-family-protein
MNNSLDIKDVTTFYEEDKHLIFGYTPTCGTCKVSERMLDIANEILQLPLLKIDLNFYPQFCKDMQIMSTPILLLMNKDKEVKRIYAFKSVTDLLENLK
>NZ_CP047794.1|WP_047213258.1|1252931_1253957_-|methionine-ABC-transporter-ATP-binding-protein
MIELKEVVKEYRTKNKEVLAVDHVNLSIRAGSIYGVIGFSGAGKSTLIRMFNHLEAPTSGEVIIDGDHIGQLSKNGLRAKRQKVSMIFQHFNLLWSRTVLKNIMFPLEIAGVPRRRAKQKALELVELVGLKGREKAYPSELSGGQKQRVGIARALANDPTVLLCDEATSALDPQTTDEILDLLLKIREQQNLTIVLITHEMHVIRRICDEVAVMESGKVIEHGPVTQVFENPQHTMTKRFVKEDLNDDFETSLTELEPLEKDAYIVKLVFAGSTTTEPIVSSLSTAYDIKINILEANIKNTKNGTVGFLVLHIPYISSVDFGKFEKELIERQVKMEVLRHG
>NZ_CP047794.1|WP_000520233.1|1252243_1252939_-|ABC-transporter-permease
MGKSFSEIINEMITMPNIQWPEVWTAIVETLYMTVVSTIFAFILGLILGVLLFLSAKGKSIGARLFYSIVSFIVNLFRAIPFIILILLLIPFTSLILGTISGPTGALPALIIGAAPFYARLVEIAFKEIDKGVIEAAWSMGANTWTVIRKVLLPEAMPALVSGITVTAIALVGSTAVAGVIGAGGLGNLAYLTGFTRNQNDVILVSTVFILIIVFIIQFIGDWLTNKLDKR
>NZ_CP047794.1|WP_000732334.1|1251404_1252226_-|MetQ/NlpA-family-ABC-transporter-substrate-binding-protein
MKKLFGLILVLTFAVVLAACGNGSKSGSDDKKITVGASPAPHAEILEKAKPLLEKKGYELDIKTINDYTTPNKLLDKGEIDANYFQHTPYLNTEKKDKGYKIVSAGDVHLEPMAVYSKKYKSLKELPKGATVYVSNNPAEQGRFLKFFVDAGLIKIKKGVKIEDAKFSDITENKKDIKFNNKQSAEFLPKIYQNEDADAVIINSNFAIEQKLNPKKDSIAVESAKDNPYANLIAVKEGHQDDKKIKALIEVLQSKDIQDFINEKYNGAVIPAK
>NZ_CP047794.1|WP_000752917.1|1250448_1250643_-|CsbD-family-protein
MADESKFEQAKGNVKETVGNVTDNKNLENEGKEDKASGKAKEFVENAKEKATDFIDKVKGNKGE
>NZ_CP047794.1|WP_001183850.1|1249363_1250215_+|DUF368-domain-containing-protein
MQQFKWINILKGFAMGTSDLVPGVSGGTIALLLGIYNQFIASISGIFSRRFWPSFTFLIPIIIGMLLAMGSLSNLFNYLLSQHHIPTMFFFGGLIIGIVPYLLKISNYKTSFTTKHYMMVIAGIAILIVITLMNNGDKHAGETLTLSTGLIIKYFIAGMCASSAMLLPGISGSFMLLVFGVYGTVMLAISEVVKLNFAGLPILLAVGFGVLAGFIISSKIIQYFLTHHKLMTFALIIGFVVGSLFAVFPGLPTNIMMWFVSLVVFIIGFIVSLTLGRITAENE
>NZ_CP047794.1|WP_000168845.1|1248274_1249036_-|Fe-S-cluster-assembly-ATPase-SufC
MASTLEIKDLHVSIEDKEILKGVNLTINTDEIHAIMGPNGTGKSTLSSAIMGHPSYEVTKGEVLLDGVNILELEVDERAKAGLFLAMQYPSEITGVTNADFMRSAINAKREEGQEINLMQFIKKLDKNMDFLDIDKDMAQRYLNEGFSGGEKKRNEILQLMMLEPKFAILDEIDSGLDIDALKVVSKGINQMRGENFGALMITHYQRLLNYITPDKVHVMYAGKVVKSGGPELAKRLEEEGYEWVKEEFGSAE
>NZ_CP047794.1|WP_000205572.1|1246869_1248177_-|Fe-S-cluster-assembly-protein-SufD
MTTDILNISEEQLVDYSKAHNEPSWMTELRKKALKLTETLEMPKPDKTKLRKWDFDSFKQHDVKGDVYQSLSQLPESVREIIDVDHSKNLVIQHNNTIAYTQVDDNASKDGVIVEGLADALMNHSDLVQKYFMKDAVTVDEHRITALHTALVNGGVFVYVPKNVVVEHPVQYVVLHDDENASFYNHVIIVTEESAEVTYVENYLSNASGEGNQLNIISEVIAGANSNITYGSVDYMDKGFTGHIIRRGITEADASINWALGLMNEGSQIIDNTTNLFGDRSTSSLKSVVVGTGEQKINLTSKIVQYGKETDGYILKHGVMKEHASSVFNGIGYIKHGGTKSIANQESRVLMLSEHARGDANPILLIDEDDVQAGHAASVGRVDPDQLYYLMSRGISQREAERLVIHGFLDPVVRELPIEDVKRQLREVIERKVSK
>NZ_CP047794.1|WP_000807671.1|1245513_1246755_-|cysteine-desulfurase
MAEHSFDVNEVIKDFPILDQKVNGKRLAYLDSTATSQTPVQVLNVLEDYYKRYNSNVHRGVHTLGSLATDGYENARETVRRFINAKYFEEIIFTRGTTASINLVAHSYGDANVEEGDEIVVTEMEHHANIVPWQQLAKRKNATLKFIPMTADGELNIEDIKQTINDKTKIVAIAHISNVLGTINDVKTIAEIAHQHGAIISVDGAQAAPHMKLDMQEMNADFYSFSGHKMLGPTGIGVLFGKRELLQKMEPIEFGGDMIDFVSKYDATWADLPTKFEAGTPLIAQAIGLAEAIRYLERIGFDAIHKYEQELTIYAYEQMSAIEGIEIYGPPKDRRAGVITFNLQDVHPHDVATAVDTEGVAVRAGHHCAQPLMKWLNVSSTARASFYIYNTKEDVDQLINALKQTKEFFSYEF
>NZ_CP047794.1|WP_106459731.1|1255471_1256350_-|DUF1963-domain-containing-protein
MLNIQDVSHLSKKEQKAYNRFVESVENGNLPVLPCIEMDLKEMQEETLSQSEIGGMPFLKSFKDIPLDENNVPMVLLAQINLNDLPEQQELFPVNEGILQFWISSEDQMYGMSENLKGNNINSRLVYIKEPITDLSLENIQVHLKSLDADNEDIPFSGAFSIEFRLSKQTITCTDYKYDEDVLALWNKVNPSFALKSMFGGYDELMEPVCNTFTAKEPFNQLGGYPYFDQIDPRTNDQELKMYDRVLLQIDSTRDGKSSIIWGDLGIANILVKSTDLEAMKFDDYMYSWDCS
>NZ_CP047794.1|WP_000662306.1|1256351_1256465_-|hypothetical-protein
MKENLLGTIIWSIATFYYSRMMKIMNLAILKIKIGGS
>NZ_CP047794.1|WP_000290491.1|1256528_1256909_-|glycine-cleavage-system-protein-GcvH
MAVPNELKYSKEHEWVKVEGNVATIGITEYAQSELGDIVFVELPETDDEINEGDTFGSVESVKTVSELYAPISGKVVEVNEELEDSPEFVNESPYEKAWMVKVEISDESQLEALLTAEKYSEMIGE
>NZ_CP047794.1|WP_000589549.1|1257066_1257423_-|arsenate-reductase-family-protein
MIKFYQYKNCTTCKKAAKFLDEYGVSYEPIDIVQHTPTINEFKTIIANTGVEINKLFNTHGAKYRELDLKNKLQTLSDDEKLELLSSDGMLVKRPLAVMGDKITLGFKEDQYKETWLA
>NZ_CP047794.1|WP_001147955.1|1257566_1257887_+|thioredoxin-family-protein
MQAIKSNESFKSVINSDTPVIVKFEAGWCPDCRAMDLWIDPIVEQYNDYQWYTVNRDELEDVVVENEVMGIPSLLVFKNGDKIAHLHSANAKSPEQVESFLAETFK
>NZ_CP047794.1|WP_000422908.1|1258036_1258576_-|nitroreductase
MELQQAIANRRSVKKFKRDMHIDDALLYQAIEKAADAPNHGMREPWRVVHVPKDRLGDMSKDISKFAFPNELDKQQCHYDAVTKLGGMLLLILKTDPRQRQNDENYFAFGAYAQNLMLLLYEAGIGTCWKSPLYIYDPKVRKTLGIKKDEVLAGFLYLTDLEEDMPKAPRKNRNLITLY
>NZ_CP047794.1|WP_031927536.1|1258658_1259375_-|type-I-3-dehydroquinate-dehydratase
MTHVEVVATIAPQLYIEETLIQKINHRIDAIDVLELRIDQIENVTVDQVAEMITKLKVMQDSFKLLVTYRTKLQGGYGQFTNDLYLNLISDLANINGIDMIDIEWQADIDIEKHQRIITHLQQYNKEVVISHHNFESTPPLDELQFIFFKMQKFNPEYVKLAVMPHNKNDVLNLLQAMSTFSDTMDCKVVGISMSKLGLISRTAQGVFGGALTYGCIGEPQAPGQIDVTDLKAQVTLY
>NZ_CP047794.1|WP_031927537.1|1259522_1259945_+|organic-hydroperoxide-resistance-protein
MAIHYETKATNVGGRKGHVYTDDRALDIDIVPPAQADGKATNPEQLFAAGYASCFNGAFDLILKQNKVRDAHPEVTLTVRLEDDPDSESPKLSVSIDATIKNVISQEEAEKYLQMSHEFCPYSKATQGNINVDLNVNVVD
>NZ_CP047794.1|WP_000569881.1|1260343_1260838_+|GNAT-family-N-acetyltransferase
MIEIKTLTNNDFNEYKRLVSTVNEEFTQDSHYSQTMTDTLIHDILNQGSPKCIVFGCYENEALIATAALEQIRYVGKEHKSLIKYNFVTNNDKSINSELINFIINYARQNNYESLLTSIVSNNIGAKVFYSALGFDILGFEKNAIKIGNTYFDEHWLFYDLINK
>NZ_CP047794.1|WP_047213256.1|1260994_1261612_+|amino-acid-transporter
MLTAIIHGFILAIGLILPLGAQNVFIFNQGANQPKYRYVLPAIITAGLSDSLLIIIAVVGVSIIIMSLPVLQAIIYIVGLIFLMYMAWTIWHDKPSTDGEAQIMSPMKQVSFALSVSLLNPHAILDTIGVIGSSAALYSGSNKIAFTIACISVSWLWFFLLAILGKMVGSIDKTGKLLTIINKTSSIIIIIVALMILQKLIQLIF

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Click the colored protein region to show detailed information

Crispr_ID: NZ_CP047794_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP047794_4

1304017-1304099

Orphan

Consensus_repeat	Method
TGCAAGTTGGGGATGGGCCCCAACA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP047794_4

>merge|NZ_CP047794|4|1304017-1304099|CRISPRCasFinder
TGCAAGTTGGGGATGGGCCCCAACACAGAAGCTGACGAAAAGTCAGCTTACAATAATGTGCAAGTTGGGGATGGGCCCCAACA

>NZ_CP047794|4|4|1304017-1304099|CRISPRCasFinder
TGCAAGTTGGGGATGGGCCCCAACA	CAGAAGCTGACGAAAAGTCAGCTTACAATAATG
TGCAAGTTGGGGATGGGCCCCAACA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP047794.1\|WP_001165970.1\|1294381_1295122_-\|prolyl-oligopeptidase-family-serine-peptidase	unknown	unknown	gnl\|CDD\|224561
NZ_CP047794.1\|WP_000369723.1\|1311867_1312779_-\|RNase-adapter-RapZ	unknown	unknown	gnl\|CDD\|224574
NZ_CP047794.1\|WP_001121764.1\|1296348_1297653_-\|phosphopyruvate-hydratase	unknown	unknown	gnl\|CDD\|234617
NZ_CP047794.1\|WP_000057563.1\|1314546_1315986_-\|tetratricopeptide-repeat-protein	unknown	unknown	gnl\|CDD\|276809
NZ_CP047794.1\|WP_000070823.1\|1304404_1305034_-\|DUF4887-domain-containing-protein	unknown	unknown	gnl\|CDD\|130141
NZ_CP047794.1\|WP_001074743.1\|1300185_1301376_-\|phosphoglycerate-kinase	unknown	unknown	gnl\|CDD\|234613
NZ_CP047794.1\|WP_001260088.1\|1299302_1300064_-\|triose-phosphate-isomerase	unknown	unknown	gnl\|CDD\|234589
NZ_CP047794.1\|WP_000816306.1\|1305736_1306639_+\|TIGR01777-family-protein	unknown	unknown	gnl\|CDD\|224015
NZ_CP047794.1\|WP_047213242.1\|1309820_1310765_-\|DNA-binding-protein-WhiA	unknown	unknown	gnl\|CDD\|273194
NZ_CP047794.1\|WP_047213244.1\|1306845_1308480_-\|NAD-dependent-malic-enzyme	unknown	unknown	gnl\|CDD\|237414
NZ_CP047794.1\|WP_000654030.1\|1302577_1303591_-\|sugar-binding-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225263
NZ_CP047794.1\|WP_000785251.1\|1295550_1296009_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP047794.1\|WP_001049165.1\|1308661_1309249_-\|ATP-dependent-Clp-endopeptidase-proteolytic-subunit-ClpP	unknown	unknown	gnl\|CDD\|178955
NZ_CP047794.1\|WP_031927540.1\|1291975_1294348_-\|ribonuclease-R	unknown	unknown	gnl\|CDD\|273947
NZ_CP047794.1\|WP_001085505.1\|1297782_1299300_-\|2,3-bisphosphoglycerate-independent-phosphoglycerate-mutase	unknown	unknown	gnl\|CDD\|235463
NZ_CP047794.1\|WP_000279414.1\|1301514_1302525_-\|type-I-glyceraldehyde-3-phosphate-dehydrogenase	unknown	unknown	gnl\|CDD\|273675
NZ_CP047794.1\|WP_000134963.1\|1313544_1314480_-\|thioredoxin-disulfide-reductase	unknown	unknown	gnl\|CDD\|273540
NZ_CP047794.1\|WP_001248939.1\|1310875_1311871_-\|YvcK-family-protein	unknown	unknown	gnl\|CDD\|211689
NZ_CP047794.1\|WP_000556760.1\|1295250_1295484_-\|preprotein-translocase-subunit-SecG	unknown	unknown	gnl\|CDD\|224233
NZ_CP047794.1\|WP_001224802.1\|1315993_1316479_-\|acyltransferase	unknown	unknown	gnl\|CDD\|100053

Protein	Function_ID	Function_description	E-value
NZ_CP047794.1\|WP_000369723.1\|1311867_1312779_-\|RNase-adapter-RapZ	gnl\|CDD\|224574	COG1660, COG1660, Predicted P-loop-containing kinase [General function prediction only].	8.91133e-170
NZ_CP047794.1\|WP_001121764.1\|1296348_1297653_-\|phosphopyruvate-hydratase	gnl\|CDD\|234617	PRK00077, eno, enolase; Provisional.	0
NZ_CP047794.1\|WP_000057563.1\|1314546_1315986_-\|tetratricopeptide-repeat-protein	gnl\|CDD\|276809	sd00006, TPR, Tetratricopeptide repeat. The Tetratricopeptide repeat (TPR) typically contains 34 amino acids and is found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans. It is present in a variety of proteins including those involved in chaperone, cell-cycle, transcription, and protein transport complexes. The number of TPR motifs varies among proteins. Those containing 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accommodate an alpha-helix of a target protein. It has been proposed that TPR proteins preferentially interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes.	7.54952e-06
NZ_CP047794.1\|WP_000070823.1\|1304404_1305034_-\|DUF4887-domain-containing-protein	gnl\|CDD\|130141	TIGR01069, Endonuclease_MutS2, MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function. [DNA metabolism, Other].	0.000169916
NZ_CP047794.1\|WP_001074743.1\|1300185_1301376_-\|phosphoglycerate-kinase	gnl\|CDD\|234613	PRK00073, pgk, phosphoglycerate kinase; Provisional.	0
NZ_CP047794.1\|WP_001260088.1\|1299302_1300064_-\|triose-phosphate-isomerase	gnl\|CDD\|234589	PRK00042, tpiA, triosephosphate isomerase; Provisional.	5.89216e-146
NZ_CP047794.1\|WP_000816306.1\|1305736_1306639_+\|TIGR01777-family-protein	gnl\|CDD\|224015	COG1090, COG1090, Predicted nucleoside-diphosphate sugar epimerase [General function prediction only].	4.63895e-153
NZ_CP047794.1\|WP_047213242.1\|1309820_1310765_-\|DNA-binding-protein-WhiA	gnl\|CDD\|273194	TIGR00647, DNA_bind_WhiA, DNA-binding protein WhiA. This family describes a DNA-binding protein widely conserved in Gram-positive bacteria, and occasionally occurring elsewhere, such as in Thermotoga. It is associated with cell division, and in sporulating organisms with sporulation. [Cellular processes, Cell division].	7.99155e-152
NZ_CP047794.1\|WP_047213244.1\|1306845_1308480_-\|NAD-dependent-malic-enzyme	gnl\|CDD\|237414	PRK13529, PRK13529, oxaloacetate-decarboxylating malate dehydrogenase.	0
NZ_CP047794.1\|WP_000654030.1\|1302577_1303591_-\|sugar-binding-transcriptional-regulator	gnl\|CDD\|225263	COG2390, DeoR, Transcriptional regulator, contains sigma factor-related N-terminal domain [Transcription].	1.39665e-92
NZ_CP047794.1\|WP_001165970.1\|1294381_1295122_-\|prolyl-oligopeptidase-family-serine-peptidase	gnl\|CDD\|224561	COG1647, COG1647, Esterase/lipase [General function prediction only].	2.61955e-130
NZ_CP047794.1\|WP_001049165.1\|1308661_1309249_-\|ATP-dependent-Clp-endopeptidase-proteolytic-subunit-ClpP	gnl\|CDD\|178955	PRK00277, clpP, ATP-dependent Clp protease proteolytic subunit; Reviewed.	4.59321e-148
NZ_CP047794.1\|WP_031927540.1\|1291975_1294348_-\|ribonuclease-R	gnl\|CDD\|273947	TIGR02063, Ribonuclease_R, ribonuclease R. This family consists of an exoribonuclease, ribonuclease R, also called VacB. It is one of the eight exoribonucleases reported in E. coli and is broadly distributed throughout the bacteria. In E. coli, double mutants of this protein and polynucleotide phosphorylase are not viable. Scoring between trusted and noise cutoffs to the model are shorter, divergent forms from the Chlamydiae, and divergent forms from the Campylobacterales (including Helicobacter pylori) and Leptospira interrogans. [Transcription, Degradation of RNA].	0
NZ_CP047794.1\|WP_001085505.1\|1297782_1299300_-\|2,3-bisphosphoglycerate-independent-phosphoglycerate-mutase	gnl\|CDD\|235463	PRK05434, PRK05434, 2,3-bisphosphoglycerate-independent phosphoglycerate mutase.	0
NZ_CP047794.1\|WP_000279414.1\|1301514_1302525_-\|type-I-glyceraldehyde-3-phosphate-dehydrogenase	gnl\|CDD\|273675	TIGR01534, Glyceraldehyde-3-phosphate_dehydrogenase, glyceraldehyde-3-phosphate dehydrogenase, type I. This model represents glyceraldehyde-3-phosphate dehydrogenase (GAPDH), the enzyme responsible for the interconversion of 1,3-diphosphoglycerate and glyceraldehyde-3-phosphate, a central step in glycolysis and gluconeogenesis. Forms exist which utilize NAD (EC 1.2.1.12), NADP (EC 1.2.1.13) or either (1.2.1.59). In some species, NAD- and NADP- utilizing forms exist, generally being responsible for reactions in the anabolic and catabolic directions respectively. Two Pfam models cover the two functional domains of this protein; pfam00044 represents the N-terminal NAD(P)-binding domain and pfam02800 represents the C-terminal catalytic domain. An additional form of gap gene is found in gamma proteobacteria and is responsible for the conversion of erythrose-4-phosphate (E4P) to 4-phospho-erythronate in the biosynthesis of pyridoxine. This pathway of pyridoxine biosynthesis appears to be limited, however, to a relatively small number of bacterial species although it is prevalent among the gamma-proteobacteria. This enzyme is described by TIGR001532. These sequences generally score between trusted and noise to this GAPDH model due to the close evolutionary relationship. There exists the possiblity that some forms of GAPDH may be bifunctional and act on E4P in species which make pyridoxine and via hydroxythreonine and lack a separate E4PDH enzyme (for instance, the GAPDH from Bacillus stearothermophilus has been shown to posess a limited E4PD activity as well as a robust GAPDH activity). There are a great number of sequences in the databases which score between trusted and noise to this model, nearly all of them due to fragmentary sequences. It seems that study of this gene has been carried out in many species utilizing PCR probes which exclude the extreme ends of the consenses used to define this model. The noise level is set relative not to E4PD, but the next closest outliers, the class II GAPDH's (found in archaea, TIGR01546) and aspartate semialdehyde dehydrogenase (ASADH, TIGR01296) both of which have highest-scoring hits around -225 to the prior model. [Energy metabolism, Glycolysis/gluconeogenesis].	0
NZ_CP047794.1\|WP_000134963.1\|1313544_1314480_-\|thioredoxin-disulfide-reductase	gnl\|CDD\|273540	TIGR01292, Thioredoxin_reductase, thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (pfam00070). [Energy metabolism, Electron transport].	4.19425e-154
NZ_CP047794.1\|WP_001248939.1\|1310875_1311871_-\|YvcK-family-protein	gnl\|CDD\|211689	TIGR01826, Putative_gluconeogenesis_factor, conserved hypothetical protein, cofD-related. This model represents a subfamily of conserved hypothetical proteins that forms a sister group to the family of CofD, (TIGR01819), LPPG:Fo 2-phospho-L-lactate transferase, an enzyme of cytochrome F420 biosynthesis. Both this family and TIGR01819 are within the scope of the pfam01933. [Hypothetical proteins, Conserved].	5.06652e-172
NZ_CP047794.1\|WP_000556760.1\|1295250_1295484_-\|preprotein-translocase-subunit-SecG	gnl\|CDD\|224233	COG1314, SecG, Preprotein translocase subunit SecG [Intracellular trafficking and secretion].	6.41939e-15
NZ_CP047794.1\|WP_001224802.1\|1315993_1316479_-\|acyltransferase	gnl\|CDD\|100053	cd04647, LbH_MAT_like, Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins. MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates. MAT acetylates maltose and glucose exclusively while GAT specifically acetylates galactopyranosides. XAT catalyzes the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others. XATs are implicated in inactivating xenobiotics leading to xenobiotic resistance in patients. Members of this family contain a a left-handed parallel beta-helix (LbH) domain with at least 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). They are trimeric in their active form.	1.61723e-29

>NZ_CP047794.1|WP_000654030.1|1302577_1303591_-|sugar-binding-transcriptional-regulator
MKDLLQAQQKLIPDLIDKMYKRFSILTTISKNQPVGRRSLSEHMDMTERVLRSETDMLKKQDLIKVKPTGMEITAEGEQLISQLKGYFDIYADDNRLSEGIKNKFQIKEVHVVPGDADNSQSVKTELGRQAGQLLEGILQEDAIVAVTGGSTMACVSEAIHLLPYNVFFVPARGGLGENVVFQANTIAASMAQQAGGYYTTMYVPDNVSETTYNTLLLEPSVINTLDKIKQANVILHGIGDALKMAHRRQSPEKVIEQLQHHQAVGEAFGYYFDTQGQIVHKVKTIGLQLEDLESKDFIFAVAGGKSKGEAIKAYLTIAPKNTVLITDEAAAKIILE
>NZ_CP047794.1|WP_000279414.1|1301514_1302525_-|type-I-glyceraldehyde-3-phosphate-dehydrogenase
MAVKVAINGFGRIGRLAFRRIQEVEGLEVVAVNDLTDDDMLAHLLKYDTMQGRFTGEVEVVDGGFRVNGKEVKSFSEPDASKLPWKDLNIDVVLECTGFYTDKDKAQAHIEAGAKKVLISAPATGDLKTIVFNTNHQELDGSETVVSGASCTTNSLAPVAKVLNDDFGLVEGLMTTIHAYTGDQNTQDAPHRKGDKRRARAAAENIIPNSTGAAKAIGKVIPEIDGKLDGGAQRVPVATGSLTELTVVLEKQDVTVEQVNEAMKNASNESFGYTEDEIVSSDVVGMTYGSLFDATQTRVMSVGDRQLVKVAAWYDNEMSYTAQLVRTLAYLAELSK
>NZ_CP047794.1|WP_001074743.1|1300185_1301376_-|phosphoglycerate-kinase
MAKKIVSDLDLKGKTVLVRADFNVPLKDGEITNDNRIVQALPTIQYIIEQGGKIVLFSHLGKVKEESDKAKLTLRPVAEDLSKKLDKEVVFVPETRGEKLEAAIKDLKEGDILLVENTRYEDLDGKKESKNDPELGKYWASLGDVFVNDAFGTAHREHASNVGISTHLETAAGFLMDKEIKFIGGVVNDPHKPVVAILGGAKVSDKINVIKNLVNIADKIIIGGGMAYTFLKAQGKEIGISLLEEDKIDFAKDLLEKHGDKIVLPVDTKVAKEFSNDAKITVVPSDSIPADQEGMDIGPNTVKLFADELEGAHTVVWNGPMGVFEFSNFAQGTIGVCKAIANLKDAITIIGGGDSAAAAISLGFENDFTHISTGGGASLEYLEGKELPGIKAINNK
>NZ_CP047794.1|WP_001260088.1|1299302_1300064_-|triose-phosphate-isomerase
MRTPIIAGNWKMNKTVQEAKDFVNALPTLPDSKEVESVICAPAIQLDALTTAVKEGKAQGLEIGAQNTYFEDNGAFTGETSPVALADLGVKYVVIGHSERRELFHETDEEINKKAHAIFKHGMTPIICVGETDEERESGKANDVVGEQVKKAVAGLSEDQLKSVIIAYEPIWAIGTGKSSTSEDANEMCAFVRQTIADLSSKEVSEATRIQYGGSVKPNNIKEYMAQTDIDGALVGGASLKVEDFVQLLEGAK
>NZ_CP047794.1|WP_001085505.1|1297782_1299300_-|2,3-bisphosphoglycerate-independent-phosphoglycerate-mutase
MAKKPTALIILDGFANRESEHGNAVKLANKPNFDRYYNKYPTTQIEASGLDVGLPEGQMGNSEVGHMNIGAGRIVYQSLTRINKSIEDGDFFENDVLNNAIAHVNSHDSALHIFGLLSDGGVHSHYKHLFALLELAKKQGVEKVYVHAFLDGRDVDQKSALKYIEETEAKFNELGIGQFASVSGRYYAMDRDKRWEREEKAYNAIRNFDAPTYATAKEGVEASYNEGLTDEFVVPFIVENQNDGVNDGDAVIFYNFRPDRAAQLSEIFANRAFEGFKVEQVKDLFYATFTKYNDNIDAAIVFEKVDLNNTIGEIAQNNNLTQLRIAETEKYPHVTYFMSGGRNEEFKGERRRLIDSPKVATYDLKPEMSAYEVKDALLEELNKGDLDLIILNFANPDMVGHSGMLEPTIKAIEAVDECLGEVVDKILDMDGYAIITADHGNSDQVLTDDDQPMTTHTTNPVPVIVTKEGVTLRETGRLGDLAPTLLDLLNVEQPEDMTGESLIKH
>NZ_CP047794.1|WP_001121764.1|1296348_1297653_-|phosphopyruvate-hydratase
MPIITDVYAREVLDSRGNPTVEVEVLTESGAFGRALVPSGASTGEHEAVELRDGDKSRYLGKGVTKAVENVNEIIAPEIIEGEFSVLDQVSIDKMMISLDGTPNKGKLGANAILGVSIAVARAAADLLGQPLYKYLGGFNGKQLPVPMMNIVNGGSHSDAPIAFQEFMILPVGATTFKESLRWGTEIFHNLKSILSKRGLETAVGDEGGFAPKFEGTEDAVETIIQAIEAAGYKPGEEVFLGFDCASSEFYENGVYDYSKFEGEHGAKRTAAEQVDYLEQLVDKYPIITIEDGMDENDWDGWKQLTERIGDRVQLVGDDLFVTNTEILAKGIENGIGNSILIKVNQIGTLTETFDAIEMAQKAGYTAVVSHRSGETEDTTIADIAVATNAGQIKTGSLSRTDRIAKYNQLLRIEDELFETAKYDGIKSFYNLDK
>NZ_CP047794.1|WP_000785251.1|1295550_1296009_-|hypothetical-protein
MADRTNKEIKTGRFIATASIVFSILLIIHYFVSLDNATAKALLNLTNQNTSDKAIDYILNSFRFTGIMYILAYLAGFITFWNRHTYVWWFMFAVYVSNSLFTLINLSITIQAIKAAHGAYLTLPILIVIIGSIALAIYMLVVSIKRKSTFNR
>NZ_CP047794.1|WP_000556760.1|1295250_1295484_-|preprotein-translocase-subunit-SecG
MHTFLIVLLIIDCIALITVVLLQEGKSSGLSGAISGGAEQLFGKQKQRGVDLFLNRLTIILSILFFVLMICISYLGM
>NZ_CP047794.1|WP_001165970.1|1294381_1295122_-|prolyl-oligopeptidase-family-serine-peptidase
MQIKLPKPFFFEEGKRAVLLLHGFTGNSSDVRQLGRFLQKKGYTSYAPQYEGHAAPPEEILQSSPFVWFKDALDGYDYLVEQGYDEIVVAGLSLGGDFALKLSLNRDVKGIVTMCAPMGGKTEGAIYEGFLEYARNFKKYEGKDQETIDNEMHHFKPTETLKELSEALDTIKDQVDEVFDPILVIQAENDNMIDPQSANYIYEHVDSDEKDIKWYSQSGHVITIDKEKEQVFDDIYQFLESLDWSE
>NZ_CP047794.1|WP_031927540.1|1291975_1294348_-|ribonuclease-R
MNLKQSIEEIINQPEYEPMSVSDFQDALGLSSADSFRDLIKVLVELEQSGLIERSKTDRYQKKHSSKGQSKLIKGTLSQNKKGFAFLRPEDKDMEDIFIPPTKINRALDGDTVIVEIHQSKGEHKGKIEGEVKSIEKHSVTQVVGTYSQARHFGFVIPDDKRIMQDIFIPKGQSLGAVDGHKVLVQITKYADGSDNPEGHISAILGHKNDPGVDILSIIYQHGIEIEFPDEVLQEAEATPDNIEDSEIKGRHDLRNELTITIDGADAKDLDDAISVKKLANGNTQLTVSIADVSYYVTEGSALDKEAYDRATSVYLVDRVIPMIPHRLSNGICSLNPNVDRLTLSCRMEIDDSGRVVKHEIFDSVIHSDYRMTYDEVNQIITEKDPTIREQYNEITPMLDLAQDLSNRLIQMRKRRGEIDFDISEAKVLVNEDGIPTDVQLRQRGEGERLIESFMLIANETVAEHFSKLDVPFIYRVHEQPKSDRLRQFFDFITNFGIMIKGTGEDIHPTTLQKVQEEVEGRPEQMVISTMMLRSMQQAHYDDVNLGHFGLSAEYYTHFTSPIRRYPDLTVHRLIRKYLIEKSMDNKEVKRWEDKLPELAEHTSKRERRAIEAERDTDELKKAEYMIQHIGDEFEGIVSSVANFGMFIELPNTIEGMVHIANMTDDYYRFEERQMALIGERQAKVFRIGDTVKVKVTHVDVDERLIDFQIVGMPLPKNDRSQRPARGKTIQAKTRGKSLDKSKSDDKGHKKKGKQRKGKNERKNDKSGNSKYKPFYKDKSVKKKARRKKK
>NZ_CP047794.1|WP_000070823.1|1304404_1305034_-|DUF4887-domain-containing-protein
MSNQNYDYNKNEDGSKKKMSTTAKVVSIATVLLLLGGLVFAIFAYVDHSNKAKERMLNEQKQEQKEKRQKENAEKERKKKQQEEKEQNELDSQANQYQQLPQQNQYQYVPPQQQAPTKQLPAKEENDDKASKDESKDKDDKASQDKSDDNQKKTDDNKQPAQPKPQPQQPTPKPNNNQQNNQSNQQAKPQAPQQNSQSTTNKQNNANDK
>NZ_CP047794.1|WP_000816306.1|1305736_1306639_+|TIGR01777-family-protein
MKQYLITGGTGMVGSQLVNEIKKSDSHITILTRHDQISNDKKISYVNWAKSGWEHKVPQNIDVVINLAGATLNKRWTPEYKQTLMLSRIQSTQALYELFKSRNKAPKVLFNASATGYYPPDLFMSYTEVYKTLPFDFLSDIVYQWERFAQQIEQLGTRVVIGRFGIILSNEGGALQTMKLPYEYYIGGKLGSGQQWYSWIHINDLIQAILFLINNESASGPFNLTAPIPERQNLFGYTLARAMHKPHETWAPSLAMRLILGQMSTVVLDTQKVLPNKIQALGFQFKYSNLKMALEDLISK
>NZ_CP047794.1|WP_047213244.1|1306845_1308480_-|NAD-dependent-malic-enzyme
MKGIELLNNPFLNKGTAFTNEERKQLGLEGLLPVNVRTLEQQAEQCYEQFKAKQTDFEKRLFLMAIFNRNRTLFYKLTSEHLVEFMPIIYDPVIAQSIEQYNENFSRPQDAVFLSVDRQDQIEQELRNVANGRDIRLIVVTDAEGILGIGDWGVDGVDIAIGKLIVYTAAAGINPSQVLPVSLDVGTNNEQLLKDDLYLGNRHKRVDDETYYAFVDKFVSAVRKEYPNALLHWEDFGRGHAKNILDKYEDTLPTFNDDIQGTGIVTLAGVLGALNISKVDYTNQTFLVYGGGTAGMGITNILKDELIKQGVSEEKANQHFYIMDKQGLLFDDMDDLTEAQQVFAKNRNEFSNTVNWKNLKEVIENIKPTVLIGTSTQTGAFTEDAVKEMLKHTERPMIFPLSNPTKLAEATAQDLLKWTNGKALIGTGIPYNDIEYNGVNYSIGQANNALMYPGLGLDLIASKAKKVNQQILSAASHALGGMVNPDEPGAAVLPPVEKIHQCSRAIAKAVAQSVIDQGLNAETIDDIDKAIEAEIWYPEYKSYI
>NZ_CP047794.1|WP_001049165.1|1308661_1309249_-|ATP-dependent-Clp-endopeptidase-proteolytic-subunit-ClpP
MNLIPTVIETTNRGERAYDIYSRLLKDRIIMLGSQIDDNVANSIVSQLLFLQAQDSEKDIYLYINSPGGSVTAGFAIYDTIQHIKPDVQTICIGMAASMGSFLLAAGAKGKRFALPNAEVMIHQPLGGAQGQATEIEIAANHILKTREKLNRILSERTGQSIEKIQKDTDRDNFLTAEEAKEYGLIDEVMVPETK
>NZ_CP047794.1|WP_047213242.1|1309820_1310765_-|DNA-binding-protein-WhiA
MSFASEMKNELTRIDVDEMNAKAELSALIRMNGALSLSNQQFVINVQTENATTARRIYSLIKRVFNVEVEILVRKKMKLKKNNIYICRTKMKAKEILDELGILKDGIFTHEIDHSMIQDDEMRRSYLRGAFLAGGSVNNPETSSYHLEIFSQNESHAEGLTKLMNSYELNAKHLERKKGSITYLKEAEKISDFLSLIGGYQALLKFEDVRIVRDMRNSVNRLVNCETANLNKTVSAAMKQVESIKLIDKEIGIENLPNRLREIARIRVEHQEISLKELGEMVSTGPISKSGVNHRLRKLNDLADKIRNGEQIEL
>NZ_CP047794.1|WP_001248939.1|1310875_1311871_-|YvcK-family-protein
MRQIKVVLIGGGTGLSVMARGLREFPIDITAIVTVADNGGSTGKIRDEMDIPAPGDIRNVIAALSDSESVLSQLFQYRFEENQISGHSLGNLLIAGMTNITNDFGHAIKALSKILNIKGRVIPSTNTSVQLNAVMEDGEIVFGETNIPKKHKKIDRVFLEPNDVQPMEEAIDALREADLIVLGPGSLYTSVISNLCVNGISDALIHSDAPKLYVSNVMTQPGETDGYSVKDHIDAIHRQAGQPFIDYVICSTQTFNAQVLKKYEEKHSKPVEVNKAELEKESINVKTSSNLVEISENHLVRHNTKVLSTMIYDIALELISTIPFVPSDKRK
>NZ_CP047794.1|WP_000369723.1|1311867_1312779_-|RNase-adapter-RapZ
MDNNEKEKSKSELLVVTGLSGAGKSLVIQCLEDMGYFCVDNLPPVLLPKFVELMEQGNPSLRKVAIAIDLRGKELFNSLVAVVDKVKSESDVIIDVMFLEASTEKLISRYKETRRAHPLMEQGKRSLINAINEEREHLSQIRSIANFVIDTTKLSPKELKERIRRYYEDEEFETFTINVTSFGFKHGIQMDADLVFDVRFLPNPYYVVDLRPLTGLDKDVYNYVMKWKETEIFFEKLTDLLDFMIPGYKKEGKSQLVIAIGCTGGQHRSVALAERLGNYLNEVFEYNVYVHHRDAHIESGEKK
>NZ_CP047794.1|WP_000134963.1|1313544_1314480_-|thioredoxin-disulfide-reductase
MTEIDFDIAIIGAGPAGMTAAVYASRANLKTVMIERGIPGGQMANTEEVENFPGFEMITGPDLSTKMFEHAKKFGAVYQYGDIKSVEDKGEYKVINFGNKELTAKAVIIATGAEYKKIGVPGEQELGGRGVSYCAVCDGAFFKNKRLFVIGGGDSAVEEGTFLTKFADKVTIVHRRDELRAQRILQDRAFKNDKIDFIWSHTLKSINEKDGKVGSVTLTSTKDGSEETHEADGVFIYIGMKPLTAPFKDLGITNDVGYIVTKDDMTTSVPGIFAAGDVRDKGLRQIVTATGDGSIAAQSAAEYIEHLNDQA
>NZ_CP047794.1|WP_000057563.1|1314546_1315986_-|tetratricopeptide-repeat-protein
MAQKNNNVIPMTFDDAFYRKMANQKFKQREYKRAAEYFEKVLELSPDDLEIQIDYAQCLVQLGIAKKAEHLFYDNIIYNRHLEDSFYELSQLNIEVNEPNKAFLFGINYVIVSDDQDYRDELDQMFDVKYQSEEQIELEAQLFVVQILFQYLFSQGRLKDAKNYVLHQPQEVQDHRVVRNLLAMCYLYLGEYDTAKALYEALLQEDSTDIYALCHYTLLLYNTKENEQYQKYLKILNKVVPMNDDESFKLGIVLSYLKQYRASQQLLYPLYKKGKFLSIQMYNALAYNYYYLGEEDESHYYWDKLKQISKVEIGHAPWVIENSKEVFDQHILPLLQSDDSHYRLYGIFLLDQLNGKEIVMTESIWQVLENLNNYEKLYLTYLVQGLTLNKLDFIHRGLLTLYHNELFVSENDLMVAWINQGELIIAEKVDLTDVEPYIGAFIYLYFKNQPRNVTKNQITTWLGITQYKLNKMIEFLLSI
>NZ_CP047794.1|WP_001224802.1|1315993_1316479_-|acyltransferase
MRKFLSKTYHHTNPLWHVYRLVKFSKVFKNVIIIEFSKFIPSMVLKRHIYKQLLNINIGNQSSIAYKVMLDIFYPELITIGSNSVIGYNVTILTHEALVDEFRYGPVTIGSNTLIGANTTILPGITIGDNVKVAAGTVVSKDIPDNGFAYGNPMYIKMIRR

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Crispr_ID: NZ_CP047794_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP047794_5

1411877-1411983

Orphan

Consensus_repeat	Method
CCCTTTTAATTTATTAATTAGGGGCTCTTATGCAGTTG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP047794_5

>merge|NZ_CP047794|5|1411877-1411983|CRISPRCasFinder
CCCTTTTAATTTATTAATTAGGGGCTCTTATGCAGTTGGTGCGTTAGCAACCAACTGTATTCCTTTGTCCCCTTTTAATTTATTAATTAGGGGCTCTTTTGCAGTTG

>NZ_CP047794|5|5|1411877-1411983|CRISPRCasFinder
CCCTTTTAATTTATTAATTAGGGGCTCTTATGCAGTTG	GTGCGTTAGCAACCAACTGTATTCCTTTGTC
CCCTTTTAATTTATTAATTAGGGGCTCTTTTGCAGTTG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP047794.1\|WP_000820892.1\|1406622_1407189_+\|TIGR00730-family-Rossman-fold-protein	unknown	unknown	gnl\|CDD\|224527
NZ_CP047794.1\|WP_000081599.1\|1418774_1419419_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|223742
NZ_CP047794.1\|WP_031927551.1\|1413835_1413952_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP047794.1\|WP_000358498.1\|1405476_1406160_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|234750
NZ_CP047794.1\|WP_000148824.1\|1406162_1406621_+\|YaiI/YqxD-family-protein	unknown	unknown	gnl\|CDD\|178882
NZ_CP047794.1\|WP_001259673.1\|1408794_1409238_-\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|366181
NZ_CP047794.1\|WP_001807240.1\|1410637_1411858_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|341024
NZ_CP047794.1\|WP_000687412.1\|1412064_1412931_-\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|223656
NZ_CP047794.1\|WP_000532966.1\|1414516_1415233_-\|YebC/PmpR-family-DNA-binding-transcriptional-regulator	unknown	unknown	gnl\|CDD\|237084
NZ_CP047794.1\|WP_001090984.1\|1415422_1415782_-\|HTH-type-transcriptional-regulator-SarX	unknown	unknown	gnl\|CDD\|130944
NZ_CP047794.1\|WP_000545116.1\|1407906_1408206_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP047794.1\|WP_000842864.1\|1409364_1410054_+\|DUF1129-family-protein	unknown	unknown	unknown
NZ_CP047794.1\|WP_000638616.1\|1407284_1407827_-\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|379112
NZ_CP047794.1\|WP_000833486.1\|1414043_1414517_-\|cupin	unknown	unknown	gnl\|CDD\|226072
NZ_CP047794.1\|WP_031927553.1\|1415927_1418078_-\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|197666
NZ_CP047794.1\|WP_000731644.1\|1419779_1420577_+\|LysM-peptidoglycan-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|226451
NZ_CP047794.1\|WP_000120365.1\|1421161_1422169_-\|inorganic-phosphate-transporter	unknown	unknown	gnl\|CDD\|376541
NZ_CP047794.1\|WP_000152589.1\|1410152_1410641_-\|DUF456-domain-containing-protein	unknown	unknown	gnl\|CDD\|225395
NZ_CP047794.1\|WP_000733447.1\|1408343_1408727_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226894
NZ_CP047794.1\|WP_000865620.1\|1413046_1413691_-\|DUF402-domain-containing-protein	unknown	unknown	gnl\|CDD\|225188

Protein	Function_ID	Function_description	E-value
NZ_CP047794.1\|WP_000820892.1\|1406622_1407189_+\|TIGR00730-family-Rossman-fold-protein	gnl\|CDD\|224527	COG1611, COG1611, Predicted Rossmann fold nucleotide-binding protein [General function prediction only].	1.24037e-61
NZ_CP047794.1\|WP_000081599.1\|1418774_1419419_-\|hypothetical-protein	gnl\|CDD\|223742	COG0670, COG0670, Integral membrane protein, interacts with FtsH [General function prediction only].	9.5936e-33
NZ_CP047794.1\|WP_000358498.1\|1405476_1406160_+\|hypothetical-protein	gnl\|CDD\|234750	PRK00409, PRK00409, recombination and DNA strand exchange inhibitor protein; Reviewed.	0.000491798
NZ_CP047794.1\|WP_000148824.1\|1406162_1406621_+\|YaiI/YqxD-family-protein	gnl\|CDD\|178882	PRK00124, PRK00124, YaiI/YqxD family protein.	3.30551e-77
NZ_CP047794.1\|WP_001259673.1\|1408794_1409238_-\|GNAT-family-N-acetyltransferase	gnl\|CDD\|366181	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family. This family contains proteins with N-acetyltransferase functions such as Elp3-related proteins.	8.28382e-13
NZ_CP047794.1\|WP_001807240.1\|1410637_1411858_-\|MFS-transporter	gnl\|CDD\|341024	cd17471, MFS_Set, Sugar efflux transporter (Set) family of the Major Facilitator Superfamily of transporters. This family is composed of sugar transporters such as Escherichia coli Sugar efflux transporter SetA, SetB, SetC and other sugar transporters. SetA, SetB, and SetC are involved in the efflux of sugars such as lactose, glucose, IPTG, and substituted glucosides or galactosides. They may be involved in the detoxification of non-metabolizable sugar analogs. The Set family belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	1.22841e-101
NZ_CP047794.1\|WP_000687412.1\|1412064_1412931_-\|LysR-family-transcriptional-regulator	gnl\|CDD\|223656	COG0583, LysR, Transcriptional regulator [Transcription].	4.04787e-39
NZ_CP047794.1\|WP_000532966.1\|1414516_1415233_-\|YebC/PmpR-family-DNA-binding-transcriptional-regulator	gnl\|CDD\|237084	PRK12378, PRK12378, YebC/PmpR family DNA-binding transcriptional regulator.	8.8628e-136
NZ_CP047794.1\|WP_001090984.1\|1415422_1415782_-\|HTH-type-transcriptional-regulator-SarX	gnl\|CDD\|130944	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family. This model represents a family of transcriptional regulatory proteins in Staphylococcus aureus and Staphylococcus epidermidis. Some members contain two tandem copies of this region. This family is related to the MarR transcriptional regulator family described by pfam01047. [Regulatory functions, DNA interactions].	8.17439e-23
NZ_CP047794.1\|WP_000638616.1\|1407284_1407827_-\|GNAT-family-N-acetyltransferase	gnl\|CDD\|379112	pfam13302, Acetyltransf_3, Acetyltransferase (GNAT) domain. This domain catalyzes N-acetyltransferase reactions.	2.46003e-27
NZ_CP047794.1\|WP_000833486.1\|1414043_1414517_-\|cupin	gnl\|CDD\|226072	COG3542, COG3542, Uncharacterized conserved protein [Function unknown].	7.22926e-75
NZ_CP047794.1\|WP_031927553.1\|1415927_1418078_-\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|197666	smart00342, HTH_ARAC, helix_turn_helix, arabinose operon control protein.	1.96752e-20
NZ_CP047794.1\|WP_000731644.1\|1419779_1420577_+\|LysM-peptidoglycan-binding-domain-containing-protein	gnl\|CDD\|226451	COG3942, COG3942, Surface antigen [General function prediction only].	1.27934e-40
NZ_CP047794.1\|WP_000120365.1\|1421161_1422169_-\|inorganic-phosphate-transporter	gnl\|CDD\|376541	pfam01384, PHO4, Phosphate transporter family. This family includes PHO-4 from Neurospora crassa which is a is a Na(+)-phosphate symporter. This family also contains the leukaemia virus receptor.	2.03179e-103
NZ_CP047794.1\|WP_000152589.1\|1410152_1410641_-\|DUF456-domain-containing-protein	gnl\|CDD\|225395	COG2839, COG2839, Uncharacterized protein conserved in bacteria [Function unknown].	2.67215e-44
NZ_CP047794.1\|WP_000733447.1\|1408343_1408727_-\|hypothetical-protein	gnl\|CDD\|226894	COG4499, COG4499, Predicted membrane protein [Function unknown].	0.00351431
NZ_CP047794.1\|WP_000865620.1\|1413046_1413691_-\|DUF402-domain-containing-protein	gnl\|CDD\|225188	COG2306, COG2306, Predicted RNA-binding protein, associated with RNAses E/G family [General function prediction only].	6.81513e-92

>NZ_CP047794.1|WP_001807240.1|1410637_1411858_-|MFS-transporter
MDMFAALLQIKNYKLFVANMFLLGMGIAVTVPYLVLFATKDLGMTTNQYGLLLASAAISQFTVNSIIARFSDTHHFNRKIIIIFALLMGALGFSIYFFVDTIWLFILLYAIFQGLFAPAMPQLYASARESINVSSSKDRAQFANTVLRSMFSLGFLFGPFIGAQLIGLKGYAGLFGGTISIILFTLVLQVFFYKDLNIKHPISTQQHVEKIAPNMFKDKTLLLPFIAFILLHIGQWMYTMNMPLFVTDYLKENEQHVGYLASLCAGLEVPFMIILGVLSSRLQTRTLLIYGAIFGALFYFSIGVFKNFYMMLAGQVFLAIFLAVLLGIGISYFQDILPDFPGYASTLFSNAMVIGQLGGNLLGGAMSHWVGLENVFFVSATSIMLGMILIFFTKNQKITKEDVIST
>NZ_CP047794.1|WP_000152589.1|1410152_1410641_-|DUF456-domain-containing-protein
MTIILWLLILAAFMLAFVGLIKPIIPSVLVLWVGFLIYQFGFHNQHLSWVFYVSMALLTILILCADFLANKYFVNRFGGSKFGEYAALIGVVIGCFVLPPFGIIIIPFILVFIVELIQGYSFERAVKVSIGSIVAFLTSSIAQAIIMFIMIVWFFIDALLIN
>NZ_CP047794.1|WP_000842864.1|1409364_1410054_+|DUF1129-family-protein
MKSTAQLTKENNVKSLRLSNTDREIFENYMTYMRSDFRVNPHDTELIINRILKQLLSAEQHGLLALDFFNHDPKAHAIKELKAMPNETFKNIFKYIYQHIVLLIGIVSFLKGFLGFFMEKSGSNLYFVSFPFSVVVGFFIVFLFIWFSFKTIQLQCFNNSNWIWIFTYLAIILLIVGFFYVFFIPQSLLAFGPYIQVSNWVFIIFSFIVMPIGLRIEKNISKKHSHTFL
>NZ_CP047794.1|WP_001259673.1|1408794_1409238_-|GNAT-family-N-acetyltransferase
MRTLNKDEHNYIKQIANIHETLLSQAESNYKCTKLSIALRYEMICSRLEHTNDKIYIYENEGQLIAFIWGHFSNEKSMVNIELLYVEPQFRKLGIATQLKIALEKWAKTMNAKRISSTIHKSNLPMISLNKDLGYQVSHVKMYKDID
>NZ_CP047794.1|WP_000733447.1|1408343_1408727_-|hypothetical-protein
MKKLIISIMSVMILLAGCGKSEEKATLEKDIDNLQKENKELKDKKEKLQQEKEKLADKQKDLEKEVKDLKPSKEDNKDDKKDKDKDKDKEASQDKQSKDQTKSSDKDNHKKPTSTDKDQKANDKHQS
>NZ_CP047794.1|WP_000545116.1|1407906_1408206_-|hypothetical-protein
MHEQDFRILEGQDITLPELGRELENITGRTIADSTGEIKRVIAHLPNFESDTDTFVATYRLNHQQDFIDATFTALKSDRARLKEVPVHVELISYISKSK
>NZ_CP047794.1|WP_000638616.1|1407284_1407827_-|GNAT-family-N-acetyltransferase
MIYCETERLILRDWHEDDLLPFQKMNANYDVRKYFPSLLSYRRSELDMRTMDAVIKDYGIGLFAVEDKESHQWIGFIGLNYIPETSDYPFKELPLYEIGWRLLPEFWRKGLATEGAKAALKLAEQHQIYDVYSFTAEANKASQRVMEKIGMTVYDHFELPNLSKYHLLKRQVRYYINLRK
>NZ_CP047794.1|WP_000820892.1|1406622_1407189_+|TIGR00730-family-Rossman-fold-protein
MKRIAVYCGASKGHDPSYVQKAYDLGKYFAEQGYELVFGAGSIGIMGAIQDGVLDHGGKAIGVMPKMLDEHEITSQRLTELILVDSMHERKNKMAELADAFVMAPGGAGSLEEFFEMYSWAQIGIHEKPIAIYNINGFFNPLQTMIDHMIEEGFIDPKYRALAPLCDTKESLIESILNFKPLGTRSYD
>NZ_CP047794.1|WP_000148824.1|1406162_1406621_+|YaiI/YqxD-family-protein
MTHIIIDGDACPVVDSIIDLTTETGIFVTIIRSFSHFSNQLYPPHVSTLYVDDGPDAVDYKIVQLSTKDDIVITQDYGLASLLVDKVLIVMHHNGKIYNSKNIQQLLDKRYMNAQIRKQGGRHKGPPPFTKQDQKVFEQSLLRVIQRIKELD
>NZ_CP047794.1|WP_000358498.1|1405476_1406160_+|hypothetical-protein
MDKKKVIKFMINVLPIVLVPLIVERKRIKQHPDVQKVTDATSKVASKTSAAISNTASDVKEYVGDKKQDFENKRELKKFAREHDPAYIEKKGEKLAKQNRKDADKMNKILQKNIEKRHKEEQKAREKNEIQRIKDMKKSQKYEEKAGLTPNKLDEKTEKKGDKLAEKNRKEIAKMNKKLQKNIEKRHKEEQKRQQEADKARIKSFKKYKDYVAKSASQQNKENNTEA
>NZ_CP047794.1|WP_000687412.1|1412064_1412931_-|LysR-family-transcriptional-regulator
MKIEDYRLLITLDETKTLRKAAEILYISQPAVTQRLKAIENAFGVDIFIRTKKQLITTTEGTMIIEHARDMLKRERLFFDKMQAHIGEVNGTISIGCSSLIGQTLLPEVLSLYNAQFPNVEIQVQVGSTEQIKANHRDYHVMITRGNKVMNLANTHLFNDDHYFIFPKNRRDDVTKLPFIEFQADPIYINQIKQWYNDNLEQDYHATITVDQVATCKEMLISGVGVTILPEIMMKNISKEQFEFEKVEIDNEPLIRSTFMSYDPSMLQLPQVDSFVNLMASFVEQPKA
>NZ_CP047794.1|WP_000865620.1|1413046_1413691_-|DUF402-domain-containing-protein
MKVKYIDKRHWRRLIDREYTEVKVNNNRFKGIIGLVTMKKVRDPLEVTVVGQNIIVADDNYKWLQILPEKKRYSITVMFDNKGNPLEYYFDINIKNITQKGNARTVDLCLDVLALPSGEYELVDEDDLMFALESEQITKKQFHEAYMIAHQIMAELENDFKGFQKKIMYCFNKINAKAQKNHQKPQNKTNFEKSKQIKPKQNNQTKNHQQQKKN
>NZ_CP047794.1|WP_031927551.1|1413835_1413952_-|hypothetical-protein
MLQLFLMKLTLNDFENDKTILIIILKNHCYEEVCVLSN
>NZ_CP047794.1|WP_000833486.1|1414043_1414517_-|cupin
MKSAEQWIDELQLESHPEGGFYRETIREVLKDGRRAPFSSIYFLLTDDNISHFHRIDADEVWYYHAGDSLTIHMINPDGEYTTATLGTDIQNGDVLQYVVPKGTIFASSIEISNTYSLVGCMCQPAFEFKQFELFKQSELITQYPHLKSVIEKYALK
>NZ_CP047794.1|WP_000532966.1|1414516_1415233_-|YebC/PmpR-family-DNA-binding-transcriptional-regulator
MGRKWNNIKEKKAQKDKNTSRIYAKFGKEIYVAAKSGEPNPESNQALRLVLERAKTYSVPNHIIEKAIDKAKGAGDENFDHLRYEGFGPSGSMLIVDALTNNVNRTASDVRAAFGKNGGNMGVSGSVAYMFDHVATFGIEGKSVDEILETLMEQDVDVNDVIDDNGLTIVYAEPDQFAVVQDALRAAGVEEFKVAEFEMLPQTDIELSEADQVTFEKLIDALEDLEDVQNVFHNVDLK
>NZ_CP047794.1|WP_001090984.1|1415422_1415782_-|HTH-type-transcriptional-regulator-SarX
MNTEKLETLLGFYKQYKALSEYIDKKYKLSLNDLAVLDLTMKHCKDEKVLMQSFLKTAMDELDLSRTKLLVSIRRLIEKERLSKVRSSKDERKIYIYLNDDDISKFNALFEDVEQFLNI
>NZ_CP047794.1|WP_031927553.1|1415927_1418078_-|helix-turn-helix-transcriptional-regulator
MAKSCLHILTNNEYATTRCQDGIVLFWPIDGEIELQKFRKSKIIEDDIYIINHLDVFSIKNNKKTIMLYLSSDWFAELGYTFFNYHYTAKLIKSSYNLKCLLLKLTYRYLDNQPLNDADVRKLQDIIKIIAKEASMDKKIAQNQYRYAYYGDLRDELEYIYQNVNQRLTLKSVADKLFVSKSNLSSQFHLLMGMGFKKYIDTLKIGKSIEILLTTDSTISNISEHLGFSSSSTYSKMFKSYMDITPNEYRNLSKYNKCLMLKPEPLVGKMVQEVKEIILNYIEHYKNHLTDVIHIDEDKFETPKLFQTVIQINTYTEMKLVFLEGIFKTLLNKNSQVVFFIMPSILKSKNTMSEEEKFAIIKTIIESDLKIAFNINDIETTYYVEEAFMSVFRQISPNELSNHNNYEVHFVFDLSLMEIRTIYRMILKLHNIMLNVKLGLNITCLFEKPSVFKSLVSQIKRLKFDSLIIDNANLSSPYLMGESDELLLKNILHFKNLKQVINELDIEQEKLIFLNVENHKLLNNKEQDLSNSAPLIYKTLSALYHNFDGFGLNIFDNHQAFNAMHLYDKNGFKTTLGLILEKFIEYVSKPKYENSYYSIFDIENYYCLVIYDWRVIESETIMSNFEDSQVYINFKNNVLNDKYLIIIETLDENSGNINHLISKELRDKYEWNPSLLSKIDNYLKPAIEIKEHNFSNNSLNINVTFNALYIIKIGKK
>NZ_CP047794.1|WP_000081599.1|1418774_1419419_-|hypothetical-protein
MSQNTNHSYYHQNQHAQSISKVWLYFMYYWIIFGIGCYLGQFLPLSWRQPLSFGLLIIILATLVFERARRFGLIISHIYAVVIGLLSYATFTTYLQNLGPDIFYKNIALAIFAFIAFGIIGYFFVGDASSIGKYLFVTLITLIIASIIGIFLQNPIFYTIITVVSLLLFLLYTLYDFNRLKRGDYSPREMGFNLFINLLNIIKDILYLANMFRR
>NZ_CP047794.1|WP_000731644.1|1419779_1420577_+|LysM-peptidoglycan-binding-domain-containing-protein
MKKLAFAITATSGAAAFLTHHDAQASTQHTVQSGESLWSIAQKYNTSVESIKQNNQLDNNLVFPGQVISVGGSDAQNTSNTSPQAGSASSHTVQAGESLNIIASRYGVSVDQLMAANNLRGYLIMPNQTLQIPNGGSGGTTPTATTGSNGNASSFNHQNLYTAGQCTWYVFDRRAQAGSPISTYWSDAKYWAGNAANDGYQVNNTPSVGSIMQSTPGPYGHVAYVERVNGDGSILISEMNYTYGPYNMNYRTIPASEVSSYAFIH
>NZ_CP047794.1|WP_000120365.1|1421161_1422169_-|inorganic-phosphate-transporter
MSYIIIVTIAVVIFSLIFDFINGFHDTANAVATAVSTRALTPKTAILMAAVMNFIGALTFTGVAGTITKDIVDPFKLENGLVVVLAAILAAIIWNLATWFYGIPSSSSHALIGSIAGAAIASEGSFGVLHYQGFTKIIIVLIVSPIIAFCVGFLMYSIFKVIFKNANLTRANRNFRFFQIFTAALQSFSHGTNDAQKSMGIITLALIVANVQNDGSVEPQLWVKFACATAMGLGTAIGGWKIIKTVGGNIMKIRPANGAAADLSSALTIFVASSLHFPLSTTHVVSSSILGVGASNRAKGVKWSTAQRMIITWVITLPISAFLAAFLFYILNLFF

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Crispr_ID: NZ_CP047794_6

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP047794_6

1592234-1592323

Unclear

Consensus_repeat	Method
CAGCTTCTATGTTGGGGCCCACACCCCAACT	CRISPRCasFinder

1 spacers

cas3

The CRISPR arrays of NZ_CP047794_6

>merge|NZ_CP047794|6|1592234-1592323|CRISPRCasFinder
CAGCTTCTATGTTGGGGCCCACACCCCAACTTGCACTTTATCGTAAGCTGACTTTTCGTCAGCTTCTGTGTTGGGGCCCACACCCCAACT

>NZ_CP047794|6|6|1592234-1592323|CRISPRCasFinder
CAGCTTCTATGTTGGGGCCCACACCCCAACT	TGCACTTTATCGTAAGCTGACTTTTCGT
CAGCTTCTGTGTTGGGGCCCACACCCCAACT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP047794.1\|WP_000613714.1\|1588130_1588607_-\|2-amino-4-hydroxy-6--hydroxymethyldihydropteridine-diphosphokinase	unknown	unknown	gnl\|CDD\|223872
NZ_CP047794.1\|WP_000034728.1\|1574695_1575583_-\|pyridoxal-5'-phosphate-synthase-lyase-subunit-PdxS	unknown	unknown	gnl\|CDD\|179769
NZ_CP047794.1\|WP_141722654.1\|1577645_1579213_+\|IS3-like-element-ISSau2-family-transposase	unknown	unknown	gnl\|CDD\|222853
NZ_CP047794.1\|WP_001154302.1\|1588603_1588969_-\|dihydroneopterin-aldolase	unknown	unknown	gnl\|CDD\|238298
NZ_CP047794.1\|WP_000148607.1\|1591076_1591958_-\|Hsp33-family-molecular-chaperone-HslO	unknown	unknown	gnl\|CDD\|234643
NZ_CP047794.1\|WP_000021445.1\|1596915_1597317_-\|RNA-binding-protein-S1	unknown	unknown	gnl\|CDD\|236305
NZ_CP047794.1\|WP_000792417.1\|1597421_1597814_-\|septum-formation-initiator-family-protein	unknown	unknown	gnl\|CDD\|225471
NZ_CP047794.1\|WP_000551283.1\|1594896_1595436_-\|hypoxanthine-phosphoribosyltransferase	unknown	unknown	gnl\|CDD\|223707
NZ_CP047794.1\|WP_000951460.1\|1598091_1599285_-\|nucleotide-pyrophosphohydrolase	unknown	unknown	gnl\|CDD\|226465
NZ_CP047794.1\|WP_000167928.1\|1588946_1589750_-\|dihydropteroate-synthase	unknown	unknown	gnl\|CDD\|238380
NZ_CP047794.1\|WP_001167888.1\|1592545_1594639_-\|ATP-dependent-metallopeptidase-FtsH/Yme1/Tma-family-protein	unknown	unknown	gnl\|CDD\|273520
NZ_CP047794.1\|WP_001234988.1\|1597831_1598095_-\|RNA-binding-S4-domain-containing-protein	unknown	unknown	gnl\|CDD\|224109
NZ_CP047794.1\|WP_001790128.1\|1587644_1587737_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP047794.1\|WP_047213184.1\|1589965_1590898_-\|cysteine-synthase-A	unknown	unknown	gnl\|CDD\|273465
NZ_CP047794.1\|WP_047213181.1\|1599284_1600811_-\|polysaccharide-biosynthesis-protein	unknown	unknown	gnl\|CDD\|240529
NZ_CP047794.1\|WP_001176701.1\|1595440_1596736_-\|tRNA-lysidine(34)-synthetase-TilS	unknown	unknown	gnl\|CDD\|366502
NZ_CP047794.1\|WP_047213187.1\|1586104_1587592_-\|lysine--tRNA-ligase	unknown	unknown	gnl\|CDD\|234778
NZ_CP047794.1\|WP_000649791.1\|1604306_1604879_-\|aminoacyl-tRNA-hydrolase	unknown	unknown	gnl\|CDD\|223271
NZ_CP047794.1\|WP_000154242.1\|1600800_1604307_-\|transcription-repair-coupling-factor	cas3	cd09639_cas3_CAS-I	gnl\|CDD\|224118
NZ_CP047794.1\|WP_000799253.1\|1575686_1577069_+\|PLP-dependent-aminotransferase-family-protein	unknown	unknown	gnl\|CDD\|224089

Protein	Function_ID	Function_description	E-value
NZ_CP047794.1\|WP_000613714.1\|1588130_1588607_-\|2-amino-4-hydroxy-6--hydroxymethyldihydropteridine-diphosphokinase	gnl\|CDD\|223872	COG0801, FolK, 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase [Coenzyme metabolism].	9.12434e-73
NZ_CP047794.1\|WP_000034728.1\|1574695_1575583_-\|pyridoxal-5'-phosphate-synthase-lyase-subunit-PdxS	gnl\|CDD\|179769	PRK04180, PRK04180, pyridoxal 5'-phosphate synthase lyase subunit PdxS.	0
NZ_CP047794.1\|WP_001154302.1\|1588603_1588969_-\|dihydroneopterin-aldolase	gnl\|CDD\|238298	cd00534, DHNA_DHNTPE, Dihydroneopterin aldolase (DHNA) and 7,8-dihydroneopterin triphosphate epimerase domain (DHNTPE); these enzymes have been designated folB and folX, respectively. Folate derivatives are essential cofactors in the biosynthesis of purines, pyrimidines, and amino acids, as well as formyl-tRNA. Mammalian cells are able to utilize pre-formed folates after uptake by a carrier-mediated active transport system. Most microbes and plants lack this system and must synthesize folates de novo from guanosine triphosphate. One enzyme from this pathway is DHNA which catalyses the conversion of 7,8-dihydroneopterin to 6-hydroxymethyl-7,8-dihydropterin in the biosynthetic pathway of tetrahydrofolate. Though it is known that DHNTPE catalyzes the epimerization of dihydroneopterin triphosphate to dihydromonapterin triphosphate, the biological role of this enzyme is still unclear. It is hypothesized that it is not an essential protein since a folX knockout in E. coli has a normal phenotype and the fact that folX is not present in H. influenza. In addition both enzymes have been shown to be able to compensate for the other's activity albeit at slower reaction rates. The functional enzyme for both is an octamer of identical subunits. Mammals lack many of the enzymes in the folate pathway including, DHNA and DHNTPE.	1.74147e-48
NZ_CP047794.1\|WP_141722654.1\|1577645_1579213_+\|IS3-like-element-ISSau2-family-transposase	gnl\|CDD\|222853	PHA02517, PHA02517, putative transposase OrfB; Reviewed.	9.7105e-44
NZ_CP047794.1\|WP_000148607.1\|1591076_1591958_-\|Hsp33-family-molecular-chaperone-HslO	gnl\|CDD\|234643	PRK00114, hslO, Hsp33 family molecular chaperone HslO.	1.29884e-159
NZ_CP047794.1\|WP_000021445.1\|1596915_1597317_-\|RNA-binding-protein-S1	gnl\|CDD\|236305	PRK08582, PRK08582, RNA-binding protein S1.	4.42227e-78
NZ_CP047794.1\|WP_000792417.1\|1597421_1597814_-\|septum-formation-initiator-family-protein	gnl\|CDD\|225471	COG2919, COG2919, Septum formation initiator [Cell division and chromosome partitioning].	3.2193e-21
NZ_CP047794.1\|WP_001234988.1\|1597831_1598095_-\|RNA-binding-S4-domain-containing-protein	gnl\|CDD\|224109	COG1188, COG1188, Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog) [Translation, ribosomal structure and biogenesis].	2.63429e-32
NZ_CP047794.1\|WP_000951460.1\|1598091_1599285_-\|nucleotide-pyrophosphohydrolase	gnl\|CDD\|226465	COG3956, COG3956, Protein containing tetrapyrrole methyltransferase domain and MazG-like (predicted pyrophosphatase) domain [General function prediction only].	0
NZ_CP047794.1\|WP_000167928.1\|1588946_1589750_-\|dihydropteroate-synthase	gnl\|CDD\|238380	cd00739, DHPS, DHPS subgroup of Pterin binding enzymes. DHPS (dihydropteroate synthase), a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS.	1.16187e-122
NZ_CP047794.1\|WP_000551283.1\|1594896_1595436_-\|hypoxanthine-phosphoribosyltransferase	gnl\|CDD\|223707	COG0634, Hpt, Hypoxanthine-guanine phosphoribosyltransferase [Nucleotide transport and metabolism].	4.50006e-94
NZ_CP047794.1\|WP_001167888.1\|1592545_1594639_-\|ATP-dependent-metallopeptidase-FtsH/Yme1/Tma-family-protein	gnl\|CDD\|273520	TIGR01241, ATP-dependent_zinc_metalloprotease_FtsH, ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH. [Cellular processes, Cell division, Protein fate, Degradation of proteins, peptides, and glycopeptides].	0
NZ_CP047794.1\|WP_047213184.1\|1589965_1590898_-\|cysteine-synthase-A	gnl\|CDD\|273465	TIGR01139, Cysteine_synthase, cysteine synthase A. This model distinguishes cysteine synthase A (CysK) from cysteine synthase B (CysM). CysM differs in having a broader specificity that also allows the use of thiosulfate to produce cysteine thiosulfonate. [Amino acid biosynthesis, Serine family].	3.8342e-167
NZ_CP047794.1\|WP_047213181.1\|1599284_1600811_-\|polysaccharide-biosynthesis-protein	gnl\|CDD\|240529	cd13124, MATE_SpoVB_like, Stage V sporulation protein B, also known as Stage III sporulation protein F, and related proteins. The integral membrane protein SpoVB has been implicated in the biosynthesis of the peptidoglycan component of the spore cortex in Bacillus subtilis. This model represents a subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins. Proteins from the MATE family are involved in exporting metabolites across the cell membrane and are often responsible for multidrug resistance (MDR).	2.05199e-87
NZ_CP047794.1\|WP_001176701.1\|1595440_1596736_-\|tRNA-lysidine(34)-synthetase-TilS	gnl\|CDD\|366502	pfam01171, ATP_bind_3, PP-loop family. This family of proteins belongs to the PP-loop superfamily.	3.10271e-78
NZ_CP047794.1\|WP_047213187.1\|1586104_1587592_-\|lysine--tRNA-ligase	gnl\|CDD\|234778	PRK00484, lysS, lysyl-tRNA synthetase; Reviewed.	0
NZ_CP047794.1\|WP_000649791.1\|1604306_1604879_-\|aminoacyl-tRNA-hydrolase	gnl\|CDD\|223271	COG0193, Pth, Peptidyl-tRNA hydrolase [Translation, ribosomal structure and biogenesis].	5.81135e-97
NZ_CP047794.1\|WP_000154242.1\|1600800_1604307_-\|transcription-repair-coupling-factor	gnl\|CDD\|224118	COG1197, Mfd, Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription].	0
NZ_CP047794.1\|WP_000799253.1\|1575686_1577069_+\|PLP-dependent-aminotransferase-family-protein	gnl\|CDD\|224089	COG1167, ARO8, Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism].	2.73424e-131

>NZ_CP047794.1|WP_000148607.1|1591076_1591958_-|Hsp33-family-molecular-chaperone-HslO
MTHDYIVKALAFDGEIRAYAALTTETVQEAQTRHYTWPTASAAMGRTMTATAMMGAMLKGDQKLTVTVDGQGPIGRIIADANAKGEVRAYVDHPQTHFPLNEQGKLDVRRAVGTNGSIMVVKDVGMKDYFSGASPIVSGELGEDFTYYYATSEQTPSSVGLGVLVNPDNTIKAAGGFIIQVMPGAKDETISKLEKAISEMTPVSKLIEQGLTPEGLLNEILGKDHVQILEKMPVQFECNCSHEKFLNAIKGLGEAEIQNMIKEDHGAEAVCHFCGNKYKYTEEELNVLLESLV
>NZ_CP047794.1|WP_047213184.1|1589965_1590898_-|cysteine-synthase-A
MAQKPVDNITQIIGGTPVVKLRNVVDDNAADVYVKLDYQNPGGSVKDRIALAMIEKAEREGKIKPGDTIVEPTSGNTGIGLAFVCAAKGYKAVFTMPETMSQERRNLLKAYGAELVLTPGSEAMKGAIKKAKELKEEHGYFEPQQFENPANPEVHELTTGPELLQQFEGKTIDAFLAGVGTGGTLSGVGKVLKKEYPNIEVVAIEPEASPVLSGGEPGPHKLQGLGAGFIPGTLNTEIYDSIIKVGNDTAMEMSRRVAKEEGILAGISSGAAIYAAIQKAKELGKGKTVVTVLPSNGERYLSTPLYSFDD
>NZ_CP047794.1|WP_000167928.1|1588946_1589750_-|dihydropteroate-synthase
MTKTKIMGILNVTPDSFSDGGKFNNVESAVTRVKAMMDEGADIIDVGGASTRPGHEMISLEEELNRVLPVVEAIVGFDVKISVDTFRSEVAEACLKLGVDIINDQWAGLYDHRMFQVVAKYDAEIVLMHNGNGNRDEPVVEEMLTSLLAQAHQAKIAGISSNKIWLDPGIGFAKTRNEEAEVMARLDELVATEYPVLLATSRKRFTKEMMGYDTTPVERDEVTAATTAYGIMKGVRAVRVHNVELNAKLAKGIDFLKENENARHNLS
>NZ_CP047794.1|WP_001154302.1|1588603_1588969_-|dihydroneopterin-aldolase
MQDTIFLKGMRFYGYHGALSAENEIGQIFKVDVTLKVDLAEAGRTDNVIDTVHYGEVFEEVKSIMEGKAVNLLEHLAERIANRINSQYNRVMETKVRITKENPPIPGHYDGVGIEIVRENK
>NZ_CP047794.1|WP_000613714.1|1588130_1588607_-|2-amino-4-hydroxy-6--hydroxymethyldihydropteridine-diphosphokinase
MIQAYLGLGSNIGDRESQLNDAIKILNEYDGINVFNISPIYETAPVGYTEQPNFLNLCVEIQTTLTVLQLLECCLKTEECLHRVRKERWGPRTLDVDILLYGEEMIDLPKLSVPHPRMNERAFVLIPLNDIAANVIEPRSKLKVKDLVFVDDSVKRYK
>NZ_CP047794.1|WP_001790128.1|1587644_1587737_-|hypothetical-protein
MVNDKVLETSKEMYVEQKCLIFYKTLKENV
>NZ_CP047794.1|WP_047213187.1|1586104_1587592_-|lysine--tRNA-ligase
MSEEMNDQMLVRRQKLQELYDLGIDPFGSKFDRSGLSSDLKEEWDQYSKEELVEKEADSHVAIAGRLMTKRGKGKAGFAHVQDLAGQIQIYVRKDQVGDDEFDLWKNADLGDIVGVEGVMFKTNTGELSVKAKKFTLLTKSLRPLPDKFHGLQDIEQRYRQRYLDLITNEDSTRTFINRSKIIQEMRNYLNNKGFLEVETPMMHQIAGGAAARPFVTHHNALDATLYMRIAIELHLKRLIVGGLEKVYEIGRVFRNEGVSTRHNPEFTMIELYEAYADYHDIMDLTESMVRHIANEVLGSAKVQYNGETIDLESAWTRLHIVDAVKEATGVDFYEIKSDEEAKALAKEHGIEIKDTMKYGHILNEFFEQKVEETLIQPTFIYGHPTEISPLAKKNPEDPRFTDRFELFIVGREHANAFTELNDPIDQKGRFEAQLVEKAQGNDEAHEMDEDYIEALEYGMPPTGGLGIGIDRLVMLLTDSPSIRDVLLFPYMRQK
>NZ_CP047794.1|WP_141722654.1|1577645_1579213_+|IS3-like-element-ISSau2-family-transposase
MKTLKGALFMSIKPKVDIDVLLYMFQEYEKGVSFQYLIDTLQLDINVNTLYPKYKYYKTHGIETLLTQKQYNHYSKELKLKVVNEYLNSNQSTQDLAIKYNIRSSTQVKNWIKMYTVGKEIKNQSPKTGVYIMKARKTTFEERVTIVEYYLNHKQSYREVAEHFNISYGQIYQWVQKYQAHGKNGLVDGRGKGKPKSMMTPEEQKEAEIQALKAQNRLLEMENDVFKKVSSIGKRDDSKRKQITAYKTIEALKHQYPIQRLCRILGISRASYYKWVHYQSSELELENEQLKREIESIYHKYNGIYGYRRIYIYIRLKLGKQVNRKRIYRLMKELNLKAVIRQKRKPYRRSTPQITSENKLNRQFDIDTPNKVWLTDVTEFKIKEGSKIYLSAIYDLGVKRIVSYELGPSNNNQLVFKTFNQAIEKVENTKGILFHSDRGFQYTSKTFKHMLDECGMIQSMSRVSKCIDNGPMEGVWGTIKSEIFRGNKHFKFNSVEEATKTIHDFILFFNHERITLKMADSV
>NZ_CP047794.1|WP_000799253.1|1575686_1577069_+|PLP-dependent-aminotransferase-family-protein
MKNTLYHQLYEKLKKQIIEGQFKEGDKFYSKRQLSKHLSISQTTVEHAYQLLLDEGYIYSRPRSGYFVSEIESLTILNNQPIPSLFDDDSYKPKASDEAYDYAFNLDEIDTKHFPIELFRKYSKDLYDTNHLNQLRRGHFQGELHLRFQLAFYLFTNRGVICDPNQIIIGSSTEQLVNQLVDLLYTSTFIIEKPSYPPIKNILDKKQVEYEQIEVEDNGINVDEVIKSQKNIVYITPSHQFPTGYVMDLKKRTQLIQWAQEKEERFIIEDDYDSEFRYFGKPIPAIQGLYSRGEKVIYISTFSKSIFPSCRVAYMVLPYSIMKKYHSQNHIEGNTVPVHMQNLIATFISSGGFERHLNKMRRIYRRKLTYILNRLKPYKEQLDIQGAETGMHFTITVKNGLTLQECLDRANKVKLKLQVYNFDDDQDYKKTPKFILGFGGIDDDALKPHVDALIKSLIIK
>NZ_CP047794.1|WP_000034728.1|1574695_1575583_-|pyridoxal-5'-phosphate-synthase-lyase-subunit-PdxS
MSKIIGSDRVKRGMAEMQKGGVIMDVVNAEQARIAEEAGAVAVMALERVPSDIRAAGGVARMANPKIVEEVMNAVSIPVMAKARIGHITEARVLEAMGVDYIDESEVLTPADEEYHLRKDQFTVPFVCGCRNLGEAARRIGEGAAMLRTKGEPGTGNIVEAVRHMRQVNSEVSRLTVMNDDEIMTFAKDIGAPYEILKQIKDNGRLPVVNFAAGGVATPQDAALMMELGADGVFVGSGIFKSEDPEKFAKAIVQATTHYQDYELIGRLASELGTAMKGLDINQLSLEERMQERGW
>NZ_CP047794.1|WP_001167888.1|1592545_1594639_-|ATP-dependent-metallopeptidase-FtsH/Yme1/Tma-family-protein
MQKAFRNVLVIVIIGVIIFGLFSYLNGNGNMPKQLTYNQFTEKLEKGDLKTLEIQPQQNVYMVSGKTKNDEDYSSTILYNNEKELQKITDAAKKQNGVKLTIKEEEKQSVFVSILSTLIPVVVIALLFIFFLSQAQGGGSGGRMMNFGKSKAKMYDNNKRRVRFSDVAGADEEKQELIEIVDFLKDNKKFKEMGSRIPKGVLLVGPPGTGKTLLARAVAGEAGAPFFSISGSDFVEMFVGVGASRVRDLFDNAKKNAPCIIFIDEIDAVGRQRGAGVGGGHDEREQTLNQLLVEMDGFGENEGIIMIAATNRPDILDPALLRPGRFDRQIQVGRPDVKGREAILHVHAKNKPLDETVDLKAISQRTPGFSGADLENLLNEASLIAVREGKKKIDMRDIEEATDRVIAGPAKKSRVISKKERNIVAHHEAGHTIIGMVLDEAEVVHKVTIVPRGQAGGYAMMLPKQDRFLMTEQELLDKICGLLGGRVSEDINFNEVSTGASNDFERATQIARSMVTQYGMSKKLGPLQFGHSNGQVFLGKDMQGEPNYSSQIAYEIDKEVQRIVKEQYERCKQILLEHKEQLILIAETLLTEETLVAEQIQSLFYEGKLPEIDYDAAKVVKDEDSEFNDGKFGKSYEEIRKEQLEDGQRDESEDRKEEKDIAEDKKEADKSDEKDEPAHRQAPNIEKPYDPNHPDNK
>NZ_CP047794.1|WP_000551283.1|1594896_1595436_-|hypoxanthine-phosphoribosyltransferase
MHNDLKEVLLTEEDIQNICKELGAQLTKDYQGKPLVCVGILKGSAMFMSDLIKRIDTHLSIDFMDVSSYHGGTESTGEVQIIKDLGSSIENKDVLIIEDILETGTTLKSITELLQSRKVNSLEIVTLLDKPNRRKADIEAKYVGKKIPDEFVVGYGLDYRELYRNLPYIGTLKPEVYSN
>NZ_CP047794.1|WP_001176701.1|1595440_1596736_-|tRNA-lysidine(34)-synthetase-TilS
MQLNSNGWHVDDHIVVAVSTGIDSMCLLYQLLKDYKDSYRKLTCLHVNHGVRSASIEEARFLEAYCERHHIDLHIKKLDLSHSLNRNNSIQNEARIKRYEWFDEMMNVLEADVLLTAHHLDDQLETIMYRIFNGKSTRNKLGFDELSKRKGYQIYRPLLAVSKKEIKQFQERYHIPYFEDESNKDNKYVRNDIRNRIIPAIDENNQLKVSHLLKLKQWHDEQYDILQYSAKQFIQEFVKFDEQSKYLEVSRQSFNDLPNSLKMVVLDCLLSKYYELFNISAKTYEEWFKQFSSKKAQFSINLTDKWIIQIAYGKLIIMAKNNGDTYFRVQTIEKPGNYIFNKYRLEIHSNLPKCLFPLSVRTRQSGDTFKLNGRDGYKKVNRLFIDCKVQQWVRDQMPIVLDKQQRIIAVGDLYQQQTIKQWIIISKNGDE
>NZ_CP047794.1|WP_000021445.1|1596915_1597317_-|RNA-binding-protein-S1
MSIEVGNKLKGKVTGIKKFGAFVELPEGKSGLVHISEVADNYVENVEEHLSVGDEVDVKVLSIADDGKISLSIKKAKDRPRRQHTSKPSHQKPVQKAEDFEKKLSNFLKDSEDKLTSIKRQTESRRGGKGSRR
>NZ_CP047794.1|WP_000792417.1|1597421_1597814_-|septum-formation-initiator-family-protein
MKNKVEHIENQYTSQENKKKQRQKMKMRVVRRRITVFAGVLLAIIVVLSILLVVQKHRNDIDAQERKAKEAQFQKQQNEEIALKEKLNNLNDKDYIEKIARDDYYLSNKGEVIFRLPEDKDSSSSKSSKK
>NZ_CP047794.1|WP_001234988.1|1597831_1598095_-|RNA-binding-S4-domain-containing-protein
MRLDKYLKVSRLIKRRTLAKEVSDQGRITINGNVAKAGSDVKVEDVLTIRFGQKLVTVKVTALNEHASKDNAKGMYEIIEERRLEEA
>NZ_CP047794.1|WP_000951460.1|1598091_1599285_-|nucleotide-pyrophosphohydrolase
MAHTITIVGLGNYGIDDLPLGIYKFLKTQNKVYARTLDHPVIESLQDELTFQSFDHVYETHDQFEDVYNDIVAQLVEAANEKDIVYAVPGHPRVAETTTVKLLALAKDNTDIDVKVLGGKSFIDDVFEAVNVDPNDGFTLLDATSLQEVTLNVRTHTLITQVYSAMVAANLKITLMERYPDDYPVQIVTGARSDGADNVVTCPLYELDHDENAFNNLTSVFVPKITTPTYLYHDFDFATEVIDTLVDEDKGCPWDKVQTHETLKRYLLEETFELFEAIDNEDDWHMIEELGDILLQVLLHTSIGKKEGYIDIKEVITSLNAKMIRRHPHIFGDANAETIDDLKEIWSKAKDAEGKQPRVKFEKVFAEHFLNLYEKTKDKSFDEAALKQWLEKGESNT
>NZ_CP047794.1|WP_047213181.1|1599284_1600811_-|polysaccharide-biosynthesis-protein
MKHKEAFNGVVVLTAALIVIKILSAVYRIPYQNILGDTGLYAYQQVYPIVALGMILSMNAIPSAITQNIGEYHSDEAYAKAVAYIQLVGILLFIAIFVFANNIAYMMGDSHLTPMIQAASLSFIFIGMLGVLRGYYQSANNMTVPAISQVIEQVIRVGIIIVTIVIFVDRGWTIYEAGTIAILASTIGFLGSSIYLVAHRPFKFKMVNNTAKIVWKQFALSVLIFAISQLIVILWQVIDSVTIIKSLQAIRVPFDVAITEKGVYDRGASFIQMGLIVTTTFSFALIPLLSDAIKMNNQVLMNRYANASLKITILISTAAGIGLINLLPLMNGVFFKTNDLTLTLSVYMITVICVSLIMMDMALLQAQHAVRPIFVGMMAGLVIKFILNIILIRLSGIIGASISTVVSLIIFGTIIHIAVTRKYHLHAMRRFFINVVLGMVFMSIVVQCVLNIVTTHGRITGLIELLCAAVLGIIALFFYIFRFNVLTYKELTYLPFGSKLYQIKKGRR
>NZ_CP047794.1|WP_000154242.1|1600800_1604307_-|transcription-repair-coupling-factor
MTILTTLIKEDNHFQDLNQVFGQANTLVTGLSPSAKVTMIAEKYAQSNQQLLLITNNLYQADKLETDLLQFVDAEELYKYPVQDIMTEEFSTQSPQLMSERIRTLTALAQGKKGLFIVPLNGLKKWLTPVEMWQNHQMTLRVGEDIDVDQFLNKLVNMGYKRESVVSHIGEFSLRGGIIDIFPLIGEPIRIELFDTEIDSIRDFDVETQRSKDNIEEVDITTASDYIITEEVISHLKEELKTAYENTRPKIDKSVRNDLKETYESFKLFESTYFDHQILRRLVAFMYETPSTIIDYFQKDAIIAVDEFNRIKETEESLTVESDTFISNIIESGNGFIGQSFIKYDDFETLIEGYPVTYFSLFATTMPIKLNHIIKFSCKPVQQFYGQYDIMRSEFQRYVNQNYHIVVLVETETKVERMQAMLSEMHIPSITKLHRSMSSGQAVIIEGSLSEGFELPDMGLVVITERELFKSKQKKQRKRTKAISNAEKIKSYQDLNVGDYIVHVHHGVGRYLGVETLEVGQTHRDYIKLQYKGTDQLFVPVDQMDQVQKYVASEDKTPKLNKLGGSEWKKTKAKVQQSVEDIAEELIDLYKEREMAEGYQYGEDTAEQTTFELDFPYELTPDQAKSIDEIKDDMQKSRPMDRLLCGDVGYGKTEVAVRAAFKAVMEGKQVAFLVPTTILAQQHYETLIERMQDFPVEIQLMSRFRTPKEIKQTKEGLKTGFVDIVVGTHKLLSKDIQYKDLGLLIVDEEQRFGVRHKERIKTLKHNVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPENRFPVQTYVLEQNMSFIKEALERELSRDGQVFYLYNKVQSIYEKREQLQMLMPDANIAVAHGQMTERDLEETMLSFINNEYDILVTTTIIETGVDVPNANTLIIEDADRFGLSQLYQLRGRVGRSSRIGYAYFLHPANKVLTETAEDRLQAIKEFTELGSGFKIAMRDLNIRGAGNLLGKQQHGFIDTVGFDLYSQMLEEAVNEKRGIKEPESEVPEVEVDLNLDAYLPTEYIANEQAKIEIYKKLRKTETFDQIIDIKDELIDRFNDYPVEVARLLDIVEIKVHALHSGITLIKDKGKIIDIHLSVKATENIDGEVLFKATQPLGRTMKVGVQNNAMTITLTKQNQWLDSLKFLVKCIEESMRISDEA
>NZ_CP047794.1|WP_000649791.1|1604306_1604879_-|aminoacyl-tRNA-hydrolase
MKCIVGLGNIGKRFELTRHNIGFEVVDYILEKNNFSLDKQKFKGAYTIERMNGDKVLFIEPMTMMNLSGEAVAPIMDYYNVNPEDLIVLYDDLDLEQGQVRLRQKGSAGGHNGMKSIIKMLGTDQFKRIRIGVGRPTNGMTVPDYVLQRFSNDEMVTMEKVIEHAARAIEKFVETSRFDHVMNEFNGEVK

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Crispr_ID: NZ_CP047794_7

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP047794_7

1836411-1836491

Orphan

Consensus_repeat	Method
AAGTTGGGGTGTGGGCCTCAACA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP047794_7

>merge|NZ_CP047794|7|1836411-1836491|CRISPRCasFinder
AAGTTGGGGTGTGGGCCTCAACAAAGAGAATTTCGAAAAGAAATTCTACAGGCAATGTAAGTTGGGGTGTGGGCCCCAACA

>NZ_CP047794|7|7|1836411-1836491|CRISPRCasFinder
AAGTTGGGGTGTGGGCCTCAACA	AAGAGAATTTCGAAAAGAAATTCTACAGGCAATGT
AAGTTGGGGTGTGGGCCCCAACA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP047794.1\|WP_000608831.1\|1828536_1829211_-\|iron-sulfur-cluster-repair-di-iron-protein-ScdA	unknown	unknown	gnl\|CDD\|183940
NZ_CP047794.1\|WP_160199127.1\|1839459_1840176_-\|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	unknown	unknown	gnl\|CDD\|184017
NZ_CP047794.1\|WP_000815795.1\|1844477_1844756_-\|PTS-sugar-transporter-subunit-IIB	unknown	unknown	gnl\|CDD\|99908
NZ_CP047794.1\|WP_000240920.1\|1831108_1832797_-\|CDP-glycerol-glycerophosphotransferase-family-protein	unknown	unknown	gnl\|CDD\|367953
NZ_CP047794.1\|WP_047213099.1\|1836725_1838420_-\|CDP-glycerol-glycerophosphotransferase-family-protein	unknown	unknown	gnl\|CDD\|367953
NZ_CP047794.1\|WP_000610198.1\|1832818_1833844_-\|alcohol-dehydrogenase-catalytic-domain-containing-protein	unknown	unknown	gnl\|CDD\|176199
NZ_CP047794.1\|WP_000645454.1\|1825793_1826534_-\|DNA-binding-response-regulator	unknown	unknown	gnl\|CDD\|184495
NZ_CP047794.1\|WP_000610166.1\|1838441_1839467_-\|alcohol-dehydrogenase-catalytic-domain-containing-protein	unknown	unknown	gnl\|CDD\|176199
NZ_CP047794.1\|WP_000607067.1\|1824543_1825245_-\|antiholin-like-protein-LrgB	unknown	unknown	gnl\|CDD\|179810
NZ_CP047794.1\|WP_001792906.1\|1825237_1825681_-\|antiholin-like-murein-hydrolase-modulator-LrgA	unknown	unknown	gnl\|CDD\|235222
NZ_CP047794.1\|WP_000120101.1\|1842991_1844251_-\|PTS-galactitol-transporter-subunit-IIC	unknown	unknown	gnl\|CDD\|226298
NZ_CP047794.1\|WP_000975345.1\|1829354_1831076_-\|glycosyltransferase-family-2-protein	unknown	unknown	gnl\|CDD\|376098
NZ_CP047794.1\|WP_000872486.1\|1833836_1834553_-\|D-ribitol-5-phosphate-cytidylyltransferase	unknown	unknown	gnl\|CDD\|184017
NZ_CP047794.1\|WP_000645615.1\|1840703_1841747_-\|galactitol-1-phosphate-5-dehydrogenase	unknown	unknown	gnl\|CDD\|176198
NZ_CP047794.1\|WP_000646193.1\|1841918_1842974_-\|zinc-binding-dehydrogenase	unknown	unknown	gnl\|CDD\|176219
NZ_CP047794.1\|WP_000230360.1\|1841770_1841917_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP047794.1\|WP_160199128.1\|1845230_1847327_-\|transcription-antiterminator	unknown	unknown	gnl\|CDD\|226234
NZ_CP047794.1\|WP_000598268.1\|1834828_1835998_-\|CDP-glycerol-glycerophosphotransferase-family-protein	unknown	unknown	gnl\|CDD\|367953
NZ_CP047794.1\|WP_000531476.1\|1844778_1845246_-\|PTS-sugar-transporter-subunit-IIA	unknown	unknown	gnl\|CDD\|238129
NZ_CP047794.1\|WP_160199126.1\|1826536_1828276_-\|sensor-histidine-kinase	unknown	unknown	gnl\|CDD\|225814

Protein	Function_ID	Function_description	E-value
NZ_CP047794.1\|WP_000608831.1\|1828536_1829211_-\|iron-sulfur-cluster-repair-di-iron-protein-ScdA	gnl\|CDD\|183940	PRK13276, PRK13276, iron-sulfur cluster repair di-iron protein ScdA.	7.18502e-154
NZ_CP047794.1\|WP_160199127.1\|1839459_1840176_-\|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	gnl\|CDD\|184017	PRK13385, PRK13385, 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; Provisional.	5.04762e-127
NZ_CP047794.1\|WP_000815795.1\|1844477_1844756_-\|PTS-sugar-transporter-subunit-IIB	gnl\|CDD\|99908	cd05566, PTS_IIB_galactitol, PTS_IIB_galactitol: subunit IIB of enzyme II (EII) of the galactitol-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII is a galactitol-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain that are expressed on three distinct polypeptide chains, in contrast to other PTS sugar transporters. The three genes encoding these subunits (gatA, gatB, and gatC) comprise the gatCBA operon. Galactitol PTS permease takes up exogenous galactitol, releasing the phosphate ester into the cytoplasm in preparation for oxidation and further metabolism via a modified glycolytic pathway called the tagatose-6-phosphate glycolytic pathway. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include galactitol, chitobiose/lichenan, ascorbate, lactose, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.	3.43648e-34
NZ_CP047794.1\|WP_000240920.1\|1831108_1832797_-\|CDP-glycerol-glycerophosphotransferase-family-protein	gnl\|CDD\|367953	pfam04464, Glyphos_transf, CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase. Wall-associated teichoic acids are a heterogeneous class of phosphate-rich polymers that are covalently linked to the cell wall peptidoglycan of gram-positive bacteria. They consist of a main chain of phosphodiester-linked polyols and/or sugar moieties attached to peptidoglycan via a linkage unit. CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase is responsible for the polymerization of the main chain of the teichoic acid by sequential transfer of glycerol-phosphate units from CDP-glycerol to the linkage unit lipid.	4.42901e-119
NZ_CP047794.1\|WP_047213099.1\|1836725_1838420_-\|CDP-glycerol-glycerophosphotransferase-family-protein	gnl\|CDD\|367953	pfam04464, Glyphos_transf, CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase. Wall-associated teichoic acids are a heterogeneous class of phosphate-rich polymers that are covalently linked to the cell wall peptidoglycan of gram-positive bacteria. They consist of a main chain of phosphodiester-linked polyols and/or sugar moieties attached to peptidoglycan via a linkage unit. CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase is responsible for the polymerization of the main chain of the teichoic acid by sequential transfer of glycerol-phosphate units from CDP-glycerol to the linkage unit lipid.	4.37957e-114
NZ_CP047794.1\|WP_000610198.1\|1832818_1833844_-\|alcohol-dehydrogenase-catalytic-domain-containing-protein	gnl\|CDD\|176199	cd08237, ribitol-5-phosphate_DH, ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability.	0
NZ_CP047794.1\|WP_000645454.1\|1825793_1826534_-\|DNA-binding-response-regulator	gnl\|CDD\|184495	PRK14084, PRK14084, DNA-binding response regulator.	9.61135e-152
NZ_CP047794.1\|WP_000610166.1\|1838441_1839467_-\|alcohol-dehydrogenase-catalytic-domain-containing-protein	gnl\|CDD\|176199	cd08237, ribitol-5-phosphate_DH, ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability.	5.94097e-178
NZ_CP047794.1\|WP_000607067.1\|1824543_1825245_-\|antiholin-like-protein-LrgB	gnl\|CDD\|179810	PRK04288, PRK04288, antiholin-like protein LrgB; Provisional.	5.86643e-124
NZ_CP047794.1\|WP_001792906.1\|1825237_1825681_-\|antiholin-like-murein-hydrolase-modulator-LrgA	gnl\|CDD\|235222	PRK04125, PRK04125, antiholin-like protein LrgA.	8.44339e-64
NZ_CP047794.1\|WP_000120101.1\|1842991_1844251_-\|PTS-galactitol-transporter-subunit-IIC	gnl\|CDD\|226298	COG3775, GatC, Phosphotransferase system, galactitol-specific IIC component [Carbohydrate transport and metabolism].	0
NZ_CP047794.1\|WP_000975345.1\|1829354_1831076_-\|glycosyltransferase-family-2-protein	gnl\|CDD\|376098	pfam18674, TarS_C1, TarS beta-glycosyltransferase C-terminal domain 1. Beta-glycosyltransferase TarS is an enzyme responsible for the glycosylation of wall teichoic acid polymers of the S. aureus cell wall, a process that has been shown to be specifically responsible for methicillin resistance in MRSA. It contains a trimerization domain composed of tandem carbohydrate binding motifs.The two C-terminally localized regions composed of a series of beta-sheets participate in an extensive trimerization interface and they assume an immunoglobulin-like fold. It is suggested that both carbohydrate binding domains may be involved in polyRboP binding, however unlike pullulanase, the CBMs of TarS are involved in the formation of an extensive trimerization interface.	5.09942e-35
NZ_CP047794.1\|WP_000872486.1\|1833836_1834553_-\|D-ribitol-5-phosphate-cytidylyltransferase	gnl\|CDD\|184017	PRK13385, PRK13385, 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; Provisional.	2.28851e-105
NZ_CP047794.1\|WP_000645615.1\|1840703_1841747_-\|galactitol-1-phosphate-5-dehydrogenase	gnl\|CDD\|176198	cd08236, sugar_DH, NAD(P)-dependent sugar dehydrogenases. This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Horse liver alcohol dehydrogenase is a dimeric enzyme and each subunit has two domains. The NAD binding domain is in a Rossmann fold and the catalytic domain contains a zinc ion to which substrates bind. There is a cleft between the domains that closes upon formation of the ternary complex.	2.26749e-178
NZ_CP047794.1\|WP_000646193.1\|1841918_1842974_-\|zinc-binding-dehydrogenase	gnl\|CDD\|176219	cd08258, Zn_ADH4, Alcohol dehydrogenases of the MDR family. This group shares the zinc coordination sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines.	1.81132e-146
NZ_CP047794.1\|WP_160199128.1\|1845230_1847327_-\|transcription-antiterminator	gnl\|CDD\|226234	COG3711, BglG, Transcriptional antiterminator [Transcription].	1.82137e-84
NZ_CP047794.1\|WP_000598268.1\|1834828_1835998_-\|CDP-glycerol-glycerophosphotransferase-family-protein	gnl\|CDD\|367953	pfam04464, Glyphos_transf, CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase. Wall-associated teichoic acids are a heterogeneous class of phosphate-rich polymers that are covalently linked to the cell wall peptidoglycan of gram-positive bacteria. They consist of a main chain of phosphodiester-linked polyols and/or sugar moieties attached to peptidoglycan via a linkage unit. CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase is responsible for the polymerization of the main chain of the teichoic acid by sequential transfer of glycerol-phosphate units from CDP-glycerol to the linkage unit lipid.	3.12979e-160
NZ_CP047794.1\|WP_000531476.1\|1844778_1845246_-\|PTS-sugar-transporter-subunit-IIA	gnl\|CDD\|238129	cd00211, PTS_IIA_fru, PTS_IIA, PTS system, fructose/mannitol specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIA PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation.	1.27465e-37
NZ_CP047794.1\|WP_160199126.1\|1826536_1828276_-\|sensor-histidine-kinase	gnl\|CDD\|225814	COG3275, LytS, Putative regulator of cell autolysis [Signal transduction mechanisms].	0

>NZ_CP047794.1|WP_000598268.1|1834828_1835998_-|CDP-glycerol-glycerophosphotransferase-family-protein
MIKTTIKKLIEHSIYTTFKLLSKLPNKNLIYFESFHGKQYSDNPKALYEYLTEHSDAQLIWGVKKGYEHIFQQHNVPYVTKFSMKWFLAMPRAKAWMINTRTPDWLYKSPRTTYLQTWHGTPLKKIGLDISNVKMLGTNTQNYQDGFKKESQRWDYLVSPNPYSTSIFQHAFHVSRDKILETGYPRNDKLSHKRNDTEYINGIKTRLNIPLDKKVIMYAPTWRDDEAIREGSYQFNVNFDIEDLRQALDDDYVILLRMHYLVVTRIDEHDDFVKDVSDYEDISDLYLISDALVTDYSSVMFDFGVLKRPQIFYAYDLDKYGDELRGFYMDYKKELPGPIVENQTALIDALKQIDETANEYIEARTVFYQKFCSLEDGHASQRICQTIFK
>NZ_CP047794.1|WP_000872486.1|1833836_1834553_-|D-ribitol-5-phosphate-cytidylyltransferase
MKYAGILAGGIGSRMGNVPLPKQFLDLDNKPILIHTLEKFILINDFEKIIIATPQQWMTHTKDTLRKFKISDERIEVIQGGSDRNDTIMNIVKHIESTNGINDDDVIVTHDAVRPFLTHRIIKENIQAALEYGAVDTVIDAIDTIVTSKDNQTIDAIPVRNEMYQGQTPQSFNINLLKESYAQLSDEQKSILSDACKIIVETNKPVRLVKGELYNIKVTTPYDLKVANAIIRGGIADD
>NZ_CP047794.1|WP_000610198.1|1832818_1833844_-|alcohol-dehydrogenase-catalytic-domain-containing-protein
MINQVYQLVAPRQFEVTYNNVDIYSDYVIVRPLYMSICAADQRYYTGSRDENVLSKKLPMSLIHEGVGEVVFDSKGVFNKGTKVVMVPNTPTEKDDVIAENYLKSSYFRSSGHDGFMQDFVLLNHDRAVPLPDDIDLSIISYTELVTVSLHAIRRFEKKSISNKNTFGIWGDGNLGYITAILLRKLYPESKIYVFGKTDYKLSHFSFVDDVFFINKIPECLTFDHAFECVGGRGSQSAINQMIDYISPEGSIALLGVSEFPVEVNTRLVLEKGLTLIGSSRSGSKDFQDVVDLYIQYPDIVDKLALLKGQEFEIATINDLTEAFEADLSTSWGKTVLKWIM
>NZ_CP047794.1|WP_000240920.1|1831108_1832797_-|CDP-glycerol-glycerophosphotransferase-family-protein
MVKSKIYIDKIYWERVQLFVEGHSENLDLEDSNFVLRNLTETRTMKANDVKIDGNQFVCRFNVAILDNGYYLPEDKYLLVNEQELDYIAQLNPDVINDAYQNLKPEQEEEYNELETQNGKINFLLQTYLKEFRKGGISKKTVYTVTPEISSDVNEFVLDVVVTTPEVKSIYIVRKYKELRKYFRKQSFNTRQFIFKAIFNTTKFFHLKKGNTVLFTSDSRPTMSGNFEYIYNEMLRQNLDKKYDIHTVFKANITDRRGIIDKFRLPYLLGKADYIFVDDFHPLIYTVRFRRSQEVIQVWHAVGAFKTVGFSRTGKKGGPFIDSLNHRSYTKAYVSSETDIPFYAEAFGIKEKNVVPTGVPRTDVLFDEAYATQIKQEMEDELPIIKGKKVILFAPTFRGSGHGTAHYPFFKIDFERLARYCEKNNAVVLFKMHPFVKNRLNIADKHKQYFVDVSDFREVNDILFITDLLISDYSSLIYEYAVFKKPMIFYAFDLEDYITTRDFYEPYESFVPGKIVQSFDALMDALDNEDYEGEKVIPFLDKHFKYQDGRSSERLVRNLFGS
>NZ_CP047794.1|WP_000975345.1|1829354_1831076_-|glycosyltransferase-family-2-protein
MMKFSVIVPTYNSEKYITELLNSLAKQDFPKTEFEVVVVDDCSTDQTLQIVEKYRNKLNLKVSQLETNSGGPGKPRNVALKQAEGEFVLFVDSDDYINKETLKDAAAFIDEHHSDVLLIKMKGVNGRGVPQSMFKETAPEVTLLNSRIIYTLSPTKIYRTALLKDNDIYFPEELKSAEDQLFTMKAYLNANRISVLSDKAYYYATKREGEHMSSAYVSPEDFYEVMRLIAVEILNADLEEAHKDQILAEFLNRHFSFSRTNGFSLKVKLEDQPQWINALGDFIQAVPERVDALVMSKLRPLLHYARAKDIDNYRTVEESYRQGQYYRFDIVDGKLNIQFNEGEPYFEGIDIAKPKVKMTAFKFDNHKIVTELTLNEFMIGEGHYDVRLKLHSRNKKHTMYVPLSVNANKQYRFNIMLEDIKAYLPKEKIWDVFLEVQIGTEVFEVRVGNQRNKYAYTAETSALIHLNNDFYRLTPYFTKDFNNISLYFTAITLTDSISMKLKGKNKIILTGLDRGYVFEEGMASVVLKDDMIMGMLSQTSENEVEILLSKDIKKRDFKNIVKLNTAHMTYSLK
>NZ_CP047794.1|WP_000608831.1|1828536_1829211_-|iron-sulfur-cluster-repair-di-iron-protein-ScdA
MINKNDIVADVVTDYPKAADIFRSVGIDFCCGGQVSIEAASLEKKNVDLNELLQRLNDVEQTNTPGSLNPKFLNVSSLIQYIQAAYHEPLREEFKNLTPYVTKLSKVHGPNHPYLVELKETYDTFKNGMLEHMQKEDDVDFPKLIKYEQGEVVDDINTVIDDLVSDHIATGQLLVKMSDLTSSYEPPIEACGTWRLVYQRLKALEVLTHEHVHLENHVLFKKVS
>NZ_CP047794.1|WP_160199126.1|1826536_1828276_-|sensor-histidine-kinase
MLLLERVGLIIILAYVLMNIPYFKNLMNRRRTWKARWQLCIIFSLFALMSNLTGIVIDHQHSLSGSVYFRLDDDVSLANTRVLTIGVAGLVGGPFVGLFVGVISGIFRVYMGGADAQVYLISSIFIGIIAGYFGLQAQRRKRYPSIAKSAMIGIVMEMIQMLSILTFSHDKAYAVDLISLIALPMIIVNSVGTAIFMSIIISTLKQEEQMKAVQTHDVLQLMNQTLPYFKEGLNRESAQQIAMIIKNLMKVSAVAITSKNEILSHVGAGSDHHIPTNEILTSLSKDVLKSGKLKEVHTKEEIGCSHPNCPLRAAIVIPLEMHGSIVGTLKMYFTNPNDLTFVERQLAEGVANIFSSQIELGEAETQSKLLKDAEIKSLQAQVSPHFFFNSINTISALVRINSEKARELLLELSYFFRANLQGSKQHTITLDKELSQVRAYLSLEQARYPGRFNININVEDKYRDVLVPPFLIQILVENAIKHAFTNRKQGNDIDVSVIKETATHVRIIVQDNGQGISKDKMHLLGETSVESESGTGSALENLNLRLKGLFGKSAALQFESTSSGTTFWCVLPYERQEEE
>NZ_CP047794.1|WP_000645454.1|1825793_1826534_-|DNA-binding-response-regulator
MKALIIDDEPLARNELTYLLNEIGGFEEINEAENVKETLEALLINQYDIIFLDVNLMDENGIELGAKIQKMKEPPAIIFATAHDQYAVQAFELNATDYILKPFGQKRIEQAVNKVRATKAKDDNSANAIANDMSANFDQSLPVEIDDKIHMLKQQNIIGIGTHNGITTIHTTNHKYETTEPLNRYEKRLNPTYFIRIHRSYIINTKHIKEVQQWFNYTYMVILTNGVKMQVGRSFMKDFKASIGLL
>NZ_CP047794.1|WP_001792906.1|1825237_1825681_-|antiholin-like-murein-hydrolase-modulator-LrgA
MVVKQQKDASKPAHFFHQVIVIALVLFVSKIIESFMPIPMPASVIGLVLLFVLLCTGAVKLGEVEKVGTTLTNNIGLLFVPAGISVVNSLGVISQAPFLIIGLIIVSTILLLICTGYVTQIIMKVTSRSKGDKVTKKIKIEEAQAHD
>NZ_CP047794.1|WP_000607067.1|1824543_1825245_-|antiholin-like-protein-LrgB
MINHLALNTPYFGILLSVIPFFLATILFEKTNRFFLFAPLFVSMVFGVAFLYLTGIPYKTYKIGGDIIYFFLEPATICFAIPLYKKREVLVKHWHRIIGGIGIGTVVALLIILTFAKLAQFANDVILSMLPQAATTAIALPVSAGIGGIKELTSLAVILNGVIIYALGNKFLKLFRITNPIARGLALGTSGHTLGVAPAKELGPVEESMASIALVLVGVVVVAVVPVFVAIFF
>NZ_CP047794.1|WP_047213099.1|1836725_1838420_-|CDP-glycerol-glycerophosphotransferase-family-protein
MTKTKQAIHIDNIYWERVQLYIEGHSEGVDLTSGQFVLRNLTETKTLEANEMKIDGNTFICRFNVAILDDGYYLPMDKYLFVYHDQLEYIGQLNPNIIDQAYAALNEEQIEEYNELTTQNGKANYVLANEAKVFRKGGVSQHTVYTITPEIASDVNEFVFDIEITLPQEKSGVIATSAHWLHKQGHKASFESRSFLFKAIFNITKLLHIKRSKTILFTSDSRPNLSGNFKYVYDELLRQKVDFDYDIQTVFKANITDRRKWRDKFRLPYLLGKADYIFVDDFHPLIYTVRFRPSQEIIQVWHAVGAFKTVGFSRTGKKGGPFIDSLNHRSYTKAYVSSETDIPFYAEAFGIREENVVPTGVPRTDVLFDEAYATQIKQEMEDELPIIKGKKVILFAPTFRGNGHGTAHYPFFKIDFERLARYCEKNNVVVLFKMHPFVKNRLNISREHRQYFIDVSDYREVNDILFVTDLLISDYSSLIYEYAVFKKPMIFYAFDLEDYITTRDFYEPYELFVPGKIVQSFDALMDALDNEDYEVEKVVPFLDKHFKYQDGRSSERLVKDLFRR
>NZ_CP047794.1|WP_000610166.1|1838441_1839467_-|alcohol-dehydrogenase-catalytic-domain-containing-protein
MINQVYQLVAPRQFDVTYNNVDIYGNHVIVRPLYLSICAADQRYYTGRRDENVLRKKLPMSLVHEAVGEVVFDSKGVFEKGMKVVMVPNTPTEKHDVIAENYLASSYFRSSGYDGFMQDYVVMAHDRIVPLPNDIDLSTISYTELVSVSYHAIQRFERKSIPLKTSFGIWGDGNLGYITAILLRKLYPEAKIYVFGKTDYKLSHFSFVDDIFTVNQIPDDLKIDHAFECVGGKGSQVALQQIVEHISPEGSIALLGVSELPVEVNTRLVLEKGLTLIGSSRSGSKDFEQVVDLYRKYPDIVEKLALLKGHEINVCTMQDIVQAFEMDLSTSWGKTVLKWTI
>NZ_CP047794.1|WP_160199127.1|1839459_1840176_-|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase
MIYAGILAGGIGSRMGNVPLPKQFLDIDNKPILIHTIEKFILVSEFNEIIIATPAQWISHTQDIFKKYNITDQRVKVVAGGTDRNETIMNIIDHIRNTQGINNDDVIVTHDAVRPFLTQRIIKENIEVAAKYGAVDTVIEAIDTIVMSKDKQNIHSIPVRNEMYQGQTPQSFNIKLLQDSYRALSSEQKEILSDACKIIVESGHAVKLVRGELYNIKVTTPYDLKVANAIIQGDIADD
>NZ_CP047794.1|WP_000645615.1|1840703_1841747_-|galactitol-1-phosphate-5-dehydrogenase
MKALKLYGVEDLRYEDNEKPVIESVNDVIVKVRATGICGSDTSRYKKMGPYIKGMPFGHEFSGVVDAIGSDVTHVNVGDKVTGCPAIPCYQCEYCLKGEYARCEKLFVIGSYEPGSFAEYVKLPAQNVLKVPDNVDYIEAAMVEPSAVVAHGFYKSNIQPGMTVAVMGCGSIGLLAIQWARIFGAAHIIAIDIDAHKLDIATSLGAHQTINSKEENLEKFIENHYANQIDLAIESSGAKVTIGQILTLPKKGGEVVLLGIPYDDIEIDRVHFEKILRNELTVCGSWNCLSSNFPGKEWTATLHYMKTKDINVKPIISHFLPLEKGPETFDKLVNKKERFDKVMFTIY
>NZ_CP047794.1|WP_000230360.1|1841770_1841917_-|hypothetical-protein
MVESMLTFMLGPLRQITDFYMEHLLVSNSIVIVGYFATGIFKKKKVVN
>NZ_CP047794.1|WP_000646193.1|1841918_1842974_-|zinc-binding-dehydrogenase
MKALVKTREGHGNLELLDKEVATPLDDKVKIKVHYAGICGTDIHTYEGHYKVNFPVTLGHEFSGEIVEVGADVKDFKVGDRVTSETTFYVCNECEYCESKDYNLCNHRKGIGTQVDGAFTNYVIAREESLHHIPDEVSYQSAAMTEPLACAHHGVSKIQVNSGDVAVVMGPGPIGLLVAQVLKSKGATVVVTGLDNDKVRLDKAEALHMDYVVNLQQTDLKTYINGITDGYGADVVVECSGAVPAARQGLDILRKKGFYSQIGIFKDAEIPFDMEKVIQKEITVVGSRSQKPADWEPSLQLMADGLVNAEALVTKIYDISKWDEAYQHLKSGEGIKALLKPLDLDENEGEN
>NZ_CP047794.1|WP_000120101.1|1842991_1844251_-|PTS-galactitol-transporter-subunit-IIC
MSYFTDFVRGFLDLGATVILPVVIFLLGLFFRQKIGAAFRSGLTIGVAFVGIFLVIDLLVKNLGAAAQAMVKNLGVSLNVIDVGWPATSSIAWASSVAAFIIPLGIIVNVVLLVTKVTKTMNVDIWNFWHYTFTAAMVYAVSGSIWQALLAAVIFQVICLKVADWTAPMMSEFFDLPGVSIATGSTISYAPGIYLVKLLQRVPGLNKLDADPETIQKRFGAFGESIFVGLILGLGIGVLAGYKPGDIINLGMSMAAVMVLMPRMVKILMEGLMPVSESARTWLNKRFGEREIYIGLDAAVALGHPAVISTALILVPITVLLAVILPGNQVLPFGDLATIPFVVAFIVGAARGNIIHSVIVGTIMIAISLYIATDVAPIFTDMAKGTNVQMPKGSSEISSIDQGGNIVNYLIFKLFSLFN
>NZ_CP047794.1|WP_000815795.1|1844477_1844756_-|PTS-sugar-transporter-subunit-IIB
MKQVLVACGAGIATSTVVNNAIEEMAKEHNIKVDIKQIKITEVGPYEDTADLLVTTAMTKKEYKFPVINARNFLTGIGIEETKQQILTELQK
>NZ_CP047794.1|WP_000531476.1|1844778_1845246_-|PTS-sugar-transporter-subunit-IIA
MGQQLVHKENIMLNLSATDKESVLSQMSDVLFQNGFVKSTFKDAVIDREKEFATGLPTHLCSVAIPHTDVEHINHRTIGVAVLEKEVPFIEMGTLDQQTEVKIVFMLAMDKVDDQLKLLQQLMQIFQSEEKLEQILRTKDETILATLINDYLEYN
>NZ_CP047794.1|WP_160199128.1|1845230_1847327_-|transcription-antiterminator
MNGDNQQILREIVLNPTIHGKELESIFGLSRRQLGYRIQKINLWLEQEGYPKLERTSQGNFIVSSEIMTLFKRDVSEQQMLNGNNVIFSIETRRYYLMLMLFSKENAMSLNHFSIDLQVSKNTVIHDINHVKEQLEDHGLSLKYSRKHGYEIVGDEFEVRRFFIKLIDQRLNHDITKSEVLKALNLTFEDIAYQKDKIKQVEQFLKSRFIDKSLSSLPYVLCVIRRRIQSGHVINPLNINYQYLRDTKEYQATEIMTQHEPDLPEAEKLYLTLHLLSTSVQWTDLQESDNISNLTMAIAQMIHHFEQITFINIEDKEKLSQQLLLHLTPAFYRIKYNLTDRDELINPLQGNYQSLFHMVKQSCQSLTEYFGKSLPDNEIAYLTMLFGGSLRRQDENFDGKIKAIIVCTQGTSVSQMMLYELRNLFPEIIFLDAISLRTFENYTLDYDIVFSPMFVLTHKKLFITKVALSENEQRKLRKDVMKYINKESADIDKEINKLMGLIERTTTVNDITELRDGLEDFIANYNSISTINGSIVTQNKTLDLADLIPARHVKRIHHVENIDEAIAKASDVLVANHFIDIKYIHEMQQAFDDSYMVIMQNIAIPHAYSEKHVHKTAMSMLILQEPIYMSDGTAIHIIVPIAAVDKVTHLRALLQLRDVAQDNDAIKRIIQSRKNSDVNEILKNYSNKEARENGWDSN

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Crispr_ID: NZ_CP047794_8

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP047794_8

2343979-2344074

Orphan

Consensus_repeat	Method
AAAATTACAGGTATAGAGGAATACAGTTG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP047794_8

>merge|NZ_CP047794|8|2343979-2344074|CRISPRCasFinder
AAAATTACAGGTATAGAGGAATACAGTTGCTTGCTTCGCAACAACTGCATAAGAGCCTCTAGTAATTAAAATTACAGGTATAGAGGAATACAGTTG

>NZ_CP047794|8|8|2343979-2344074|CRISPRCasFinder
AAAATTACAGGTATAGAGGAATACAGTTG	CTTGCTTCGCAACAACTGCATAAGAGCCTCTAGTAATT
AAAATTACAGGTATAGAGGAATACAGTTG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP047794.1\|WP_001026116.1\|2342755_2343523_+\|MBL-fold-metallo-hydrolase	unknown	unknown	gnl\|CDD\|225130
NZ_CP047794.1\|WP_000202041.1\|2340063_2341602_-\|AbgT-family-transporter	unknown	unknown	gnl\|CDD\|367668
NZ_CP047794.1\|WP_000824927.1\|2341836_2342655_+\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|181491
NZ_CP047794.1\|WP_106459678.1\|2337981_2338407_+\|DUF1433-domain-containing-protein	unknown	unknown	gnl\|CDD\|284628
NZ_CP047794.1\|WP_001146762.1\|2339529_2339952_+\|carboxymuconolactone-decarboxylase-family-protein	unknown	unknown	gnl\|CDD\|225039
NZ_CP047794.1\|WP_000038226.1\|2338658_2339072_+\|DUF1433-domain-containing-protein	unknown	unknown	gnl\|CDD\|284628
NZ_CP047794.1\|WP_000040586.1\|2345930_2347232_+\|staphylopine-dehydrogenase-CntM	unknown	unknown	gnl\|CDD\|226839
NZ_CP047794.1\|WP_000590515.1\|2351591_2352341_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224049
NZ_CP047794.1\|WP_000472235.1\|2348985_2349921_+\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|223674
NZ_CP047794.1\|WP_000675402.1\|2352352_2353546_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|341042
NZ_CP047794.1\|WP_001081678.1\|2344287_2345109_+\|histidine-racemase-CntK	unknown	unknown	gnl\|CDD\|223331
NZ_CP047794.1\|WP_000072454.1\|2353769_2354519_-\|CPBP-family-intramembrane-metalloprotease	unknown	unknown	unknown
NZ_CP047794.1\|WP_001224379.1\|2336003_2336195_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP047794.1\|WP_001229078.1\|2347374_2348973_+\|staphylopine-dependent-metal-ABC-transporter-substrate-binding-protein-CntA	unknown	unknown	gnl\|CDD\|274072
NZ_CP047794.1\|WP_000220934.1\|2336454_2336736_-\|single-stranded-DNA-binding-protein	unknown	unknown	gnl\|CDD\|377790
NZ_CP047794.1\|WP_031788452.1\|2335446_2335569_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP047794.1\|WP_001058842.1\|2345119_2345938_+\|D-histidine-(S)-2-aminobutanoyltransferase-CntL	unknown	unknown	gnl\|CDD\|176222
NZ_CP047794.1\|WP_000217469.1\|2337035_2337731_+\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|226674
NZ_CP047794.1\|WP_000173873.1\|2350783_2351599_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|223521
NZ_CP047794.1\|WP_000584765.1\|2349917_2350787_+\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224094

Protein	Function_ID	Function_description	E-value
NZ_CP047794.1\|WP_001026116.1\|2342755_2343523_+\|MBL-fold-metallo-hydrolase	gnl\|CDD\|225130	COG2220, COG2220, Predicted Zn-dependent hydrolases of the beta-lactamase fold [General function prediction only].	7.05212e-25
NZ_CP047794.1\|WP_000202041.1\|2340063_2341602_-\|AbgT-family-transporter	gnl\|CDD\|367668	pfam03806, ABG_transport, AbgT putative transporter family.	0
NZ_CP047794.1\|WP_000824927.1\|2341836_2342655_+\|SDR-family-oxidoreductase	gnl\|CDD\|181491	PRK08589, PRK08589, SDR family oxidoreductase.	0
NZ_CP047794.1\|WP_106459678.1\|2337981_2338407_+\|DUF1433-domain-containing-protein	gnl\|CDD\|284628	pfam07252, DUF1433, Protein of unknown function (DUF1433). This family contains a number of hypothetical bacterial proteins of unknown function approximately 100 residues in length.	1.69803e-32
NZ_CP047794.1\|WP_001146762.1\|2339529_2339952_+\|carboxymuconolactone-decarboxylase-family-protein	gnl\|CDD\|225039	COG2128, COG2128, Uncharacterized conserved protein [Function unknown].	1.64055e-29
NZ_CP047794.1\|WP_000038226.1\|2338658_2339072_+\|DUF1433-domain-containing-protein	gnl\|CDD\|284628	pfam07252, DUF1433, Protein of unknown function (DUF1433). This family contains a number of hypothetical bacterial proteins of unknown function approximately 100 residues in length.	7.4923e-35
NZ_CP047794.1\|WP_000675402.1\|2352352_2353546_+\|MFS-transporter	gnl\|CDD\|341042	cd17489, MFS_YfcJ_like, Escherichia coli YfcJ, YhhS, and similar transporters of the Major Facilitator Superfamily. This subfamily is composed of Escherichia coli membrane proteins, YfcJ and YhhS, Bacillus subtilis uncharacterized MFS-type transporter YwoG, and similar proteins. YfcJ and YhhS are putative arabinose efflux transporters. YhhS has been implicated glyphosate resistance. YfcJ-like arabinose efflux transporters belong to the bacterial MdtG-like and eukaryotic solute carrier 18 (SLC18) family of the Major Facilitator Superfamily (MFS) of transporters. MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	7.36995e-79
NZ_CP047794.1\|WP_000590515.1\|2351591_2352341_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224049	COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism].	5.955e-107
NZ_CP047794.1\|WP_000472235.1\|2348985_2349921_+\|ABC-transporter-permease	gnl\|CDD\|223674	COG0601, DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism].	1.46808e-99
NZ_CP047794.1\|WP_001081678.1\|2344287_2345109_+\|histidine-racemase-CntK	gnl\|CDD\|223331	COG0253, DapF, Diaminopimelate epimerase [Amino acid transport and metabolism].	5.02392e-73
NZ_CP047794.1\|WP_000040586.1\|2345930_2347232_+\|staphylopine-dehydrogenase-CntM	gnl\|CDD\|226839	COG4408, COG4408, Uncharacterized protein conserved in bacteria [Function unknown].	0
NZ_CP047794.1\|WP_001229078.1\|2347374_2348973_+\|staphylopine-dependent-metal-ABC-transporter-substrate-binding-protein-CntA	gnl\|CDD\|274072	TIGR02294, Nickel-binding_periplasmic_protein, nickel ABC transporter, nickel/metallophore periplasmic binding protein. Members of this family are periplasmic nickel-binding proteins of nickel ABC transporters. Most appear to be lipoproteins. This protein was previously (circa 2003) thought to mediate binding to nickel through water molecules, but is now thought to involve a chelating organic molecule, perhaps butane-1,2,4-tricarboxylate, acting as a metallophore. [Transport and binding proteins, Cations and iron carrying compounds].	0
NZ_CP047794.1\|WP_000220934.1\|2336454_2336736_-\|single-stranded-DNA-binding-protein	gnl\|CDD\|377790	pfam07205, DUF1413, Domain of unknown function (DUF1413). This family consists of several hypothetical bacterial proteins which seem to be specific to firmicute species. Members of this family are typically around 100 residues in length. The function of this family is unknown.	2.36664e-16
NZ_CP047794.1\|WP_001058842.1\|2345119_2345938_+\|D-histidine-(S)-2-aminobutanoyltransferase-CntL	gnl\|CDD\|176222	cd08261, Zn_ADH7, Alcohol dehydrogenases of the MDR family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines.	0.000230915
NZ_CP047794.1\|WP_000217469.1\|2337035_2337731_+\|SDR-family-oxidoreductase	gnl\|CDD\|226674	COG4221, COG4221, Short-chain alcohol dehydrogenase of unknown specificity [General function prediction only].	9.67028e-99
NZ_CP047794.1\|WP_000173873.1\|2350783_2351599_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|223521	COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism].	6.55691e-118
NZ_CP047794.1\|WP_000584765.1\|2349917_2350787_+\|ABC-transporter-permease	gnl\|CDD\|224094	COG1173, DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism].	1.26003e-84

>NZ_CP047794.1|WP_001026116.1|2342755_2343523_+|MBL-fold-metallo-hydrolase
MNIRHIRNATAVIEYGGKRILIDPMLSDKGAFEPFPNSPRQDENNPLVELPLAIEDIINNIDLVILTHLHIDHFDPKAIEVLPKDIKIYTQNEADASEVEGYDFTNVSVFNDVTHIGEIELIKTDAQHGHGEILKMTGHVHGLVLKHSEEPTLYLAADTVWFDGVEKTLKAHHPDVVVLNGGANQFFEGGPLVMDEHDVLKVAHTLPLAQIVVVHMEAVNHWHLSREELNEFINSNDLGNRVVVPNDGELLTFEK
>NZ_CP047794.1|WP_000824927.1|2341836_2342655_+|SDR-family-oxidoreductase
MKRLENKVAVVTGASTGIGQASAIALAQEGAYVLAVDIAEAVSETVDKIKSNGDKAKAYIVDIASEQQIDNFASEIREQFEHVDVLFNNAGVDNAAGRIHEYPTDVYDKIMNVDMRGTFLMTKMMLPLMMTKGGSIVNTSSFSGQAADLYRSGYNAAKGAVINFTKSIAIEYGRDGIRANAIAPGTIETPLVDNLTGTCEDKEGKAFRENQKWMTPLGRLGKPEEVGKLVVFLASDESSFITGETIRIDGGVMAYTWPGEMLSDDSWKRTLE
>NZ_CP047794.1|WP_000202041.1|2340063_2341602_-|AbgT-family-transporter
MTSKHQQKGSIVNRFLNSVEKIGNKLPDPSVLFFLMCVGLAIMTWVISLFNVSVKHPGTHQTIYIKNIISHDGFTMIMNDTIKNFSEFPALGLVLAVMIGIGVAEKTGYFDKLMISVVNRAPRFLILPTIILIGILGSTAGDAATIILPPLAAMLFIKIGYHPIAGLTMAYASAVGGFAANIVVGMQDALVYSFTEPSTRIVSDSIKTNVAMNWYFIAASVVVLLPTILLVTTKLIIPRLGQYDNRLMHDDHEETSSHITDKEAHALKWANISFIVTIILLIITAIPEHSFLRNAKTGSLLDDAPLINGVGLIILVVFLVPGLVYGILSKEIKNTKDLGKMFGDAVGSMGTFIVIVFFAAQLLAYLKWSNLGIIAAVKGAKLLEHQNGIVLILGIIVLSAMVNMLIGSASAKWGILGPIFVPMLILIGFHPAFTQVIYRVGDSITNPITPMMPYLPLLLTYAQKYDKRMKLGALLSSLMPYSIALSIMWTVFVIIWFLLGIPVGPGGPIFVK
>NZ_CP047794.1|WP_001146762.1|2339529_2339952_+|carboxymuconolactone-decarboxylase-family-protein
MPYNYKKQNGELMSVMSQGEKFIHQSPVNDELSALIKLLISKINGCHYCVDIHKKELKELGVTQMKIDEVLSFRHLDLFTDQEKVTLEFAEMLNSIKDFKKFEIIDRLKSFYDEEQIIDLVFVVNQINGWNRLNIISDKL
>NZ_CP047794.1|WP_000038226.1|2338658_2339072_+|DUF1433-domain-containing-protein
MSKKKILILTSIMLIILISVAGIHLKMKYDEKEKQKAIYYKEQQERITLYLKHNTKEPNTIKSVHFTNLETSPMGSAVIEGYINENKKDDFVAYASPENNFQFVGDIVLSKNLSEIIKIKTKSPDEIKEELDKKEGH
>NZ_CP047794.1|WP_106459678.1|2337981_2338407_+|DUF1433-domain-containing-protein
MTKKHVFIIIGVILCICIVATVIYLKVKYDEKEKQKALYYKEQQERITLYLKHNTKEPNTIKTVHFTSLKTGPMGDAVIEGYINENKKADFVAYGSPEENYQFTGGLTGSNEVLGKLKKAENLKSPEKIKEEINKKKNTKQ
>NZ_CP047794.1|WP_000217469.1|2337035_2337731_+|SDR-family-oxidoreductase
MTVLTDKVAVVTGAGSGIGEAIATLLHEEGVKVILAGRNKDKLQNVANQLAQDSVKVVPTDVTKKEEVDELIKIAQQTFGGLDIVINSAGQMLSSKITDYQVDEWDSMIDVNIKGTLYTAQAALPTMLEQSSGHLINIASISGFEVTKSSTIYSATKAAVHTITQGLEKELAKTGVKVTSISPGMVDTAITAAYNPTDRKKLEPQDIAEAVLYALTQPKHVNVNEITVRPV
>NZ_CP047794.1|WP_000220934.1|2336454_2336736_-|single-stranded-DNA-binding-protein
MTYHERVLALRAESKRTAFDFRFEDLFSKEEWLSMSLAERQKAEKAFRHEVKKLDDVRMPFSSAHDAQVKLYNVVYSYNGIKRNFKQVENEGF
>NZ_CP047794.1|WP_001224379.1|2336003_2336195_+|hypothetical-protein
MRKEIEALIFSDVSSYDIYVNTGVNQGLIGDIKDGYLTIDSMPYIDAERLYHFAMERKSLVTN
>NZ_CP047794.1|WP_031788452.1|2335446_2335569_-|hypothetical-protein
MSYIIKFTFKFFEMTTYISQLTLDIELVSSELLVILSGFI
>NZ_CP047794.1|WP_001081678.1|2344287_2345109_+|histidine-racemase-CntK
MNRQVIEFSKYNPSGNMTILVHSKHDASEYASIANQLMAATHVCCEQVGFIESTQNDDGNDFHLVMSGNEFCGNATMSYIHHLQESHLLKDQQFKVKVSGCSDLVQCAIHDCQYYEVQMPQAHRVVETTINMGNHSWKAIEIIYETYVHYVIPVKQVTTEIQHLVETYVREQQWNHKYKTVGMMLFDEQRQFLQPLIYIPEIQSLIWENSCGSGTASIGVFNNYQRNDACKDFTVHQPGGSILVTSKRCHQLGYQTSIKGQVTTVATGKAYIE
>NZ_CP047794.1|WP_001058842.1|2345119_2345938_+|D-histidine-(S)-2-aminobutanoyltransferase-CntL
MNNFNNEIKLILQQYLEKFEAHYERVLQDDQYIEALETLMDDYSEFILNPIYEQQFNAWRDVEEKAQLIKSLQYITAQCVKQVEVIRARRLLDGQASTTGYFDNIEHCIDEEFGQCSIASNDKLLLVGSGAYPMTLIQVAKETGASVIGIDIDPLAVDLGRRIVNVLAPNEDITITDQKVSELKDIKDVTHIIFSSTIPLKYSILEELYDLTNENVVVAMRFGDGIKAIFNYPSQETAEDKWQCVNKHMRPQQIFDIALYKKAAIKVGITDV
>NZ_CP047794.1|WP_000040586.1|2345930_2347232_+|staphylopine-dehydrogenase-CntM
MSKLLMIGTGPVAIQLANICYLKSDYEIDMVGRASTSEKSKRLYQAYKKEKQFEVKIQNEAHQHLEGKFEINRLYKDVKNVKGEYETVVMACTADAYYDTLQQLSLETLQSVKHVILISPTFGSQMIVEQFMSKFSQDIEVISFSTYLGDTRIVDKEAPNHVLTTGVKKKLYMGSTHSNSTMCQRISALAEQLKIQLEVVESPLHAETRNSSLYVHPPLFMNDFSLKAIFEGTDVPVYVYKLFPEGPITMTLIREMRLMWKEMMAILQAFRVPSVNLLQFMVKENYPVRPETLDEGDIEHFEILPDILQEYLLYVRYTAILIDPFSQPDENGHYFDFSAVPFKQVYKNEQDVVQIPRMPSEDYYRTAMIQHIGKMLGIKTPMIDQFLTRYEASCQAYKAMHQDQQLSSQFNTNLFEGDKALVTKFLEINRTLS
>NZ_CP047794.1|WP_001229078.1|2347374_2348973_+|staphylopine-dependent-metal-ABC-transporter-substrate-binding-protein-CntA
MRKLTKMSAMLLASGLILTGCGGNKGLEEKKENKQLTYTTVKDIGDMNPHVYGGSMSAESMIYEPLVRNTKDGIKPLLAKKWDVSEDGKTYTFHLRDDVKFHDGTPFDADAVKKNIDAVQENKKLHSWLKISTLIDNVKVKDKYTVELNLKEAYQPALAELAMPRPYVFVSPKDFKNGTTKDGVKKFDGTGPFKLGEHKKDESADFNKNDQYWGEKSKLNKVQAKVMPAGETAFLSMKKGETNFAFTDDRGTDSLDKDSLKQLKDTGDYQVKRSQPMNTKMLVVNSGKKDNAVSDKTVRQAIGHMVNRDKIAKEILDGQEKPATQLFAKNVTDINFDMPTRKYDLKKAESLLDEAGWKKGKDSDVRQKDGKNLEMAMYYDKGSSSQKEQAEYLQAEFKKMGIKLNINGETSDKIAERRTSGDYDLMFNQTWGLLYDPQSTIAAFKAKNGYESATSGIENKDKIYNSIDDAFKIQNGKERSDAYKNILKQVDDEGIFIPISHGSMTVVAPKDLEKVSFTQSQYELPFNEMQYK
>NZ_CP047794.1|WP_000472235.1|2348985_2349921_+|ABC-transporter-permease
MFKFILKRIALMFPLMIVVSFMTFLLTYITNENPAVTILHAQGTPNVTPELIAETNEKYGFNDPLLIQYKNWLLEAMQFNFGTSYITGDPVAERIGPAFMNTLKLTIISSVMVMITSIILGVVSALKRGKFTDRAIRSVAFFLTALPSYWIASILIIYVSVKLNILPTSGLTGPESYILPVIVITIAYAGIYFRNVRRSMVEQLNEDYVLYLRASGVKSITLMLHVLRNALQVAVSIFCMSIPMIMGGLVVIEYIFAWPGLGQLSLKAILEHDFPVIQAYVLIVAVLFIVFNTLADIINALLNPRLREGAR
>NZ_CP047794.1|WP_000584765.1|2349917_2350787_+|ABC-transporter-permease
MIILKRLLQDKGAVIALGIIVLYVFLGLAAPLVTFYDPNHIDTANKFAGMSFQHLLGTDHLGRDILTRLIYAIRPSLLYVFVALFVSVLIGSILGFLSGYFQGFVDALIMRACDVMLAFPSYVVTLALIALFGMGAENIIMAFILTRWAWFCRVIRTSVMQYTASDHVRFAKTIGMNDMKIIHKHIMPLTLADIAIISSSSMCSMILQISGFSFLGLGVKAPTAEWGMMLNEARKVMFTHPEMMFAPGIAIVIIVMAFNFLSDALQIAIDPRISSKDKLRSVKKGVVQS
>NZ_CP047794.1|WP_000173873.1|2350783_2351599_+|ABC-transporter-ATP-binding-protein
MTLLTVKHLTITDTWTDQPLVSDVNFTLTKGETLGVIGESGSGKSITCKSIVGLNPERLRVTGDITFDGKPMLSLSEAQLKKYRGKDIAMVMQQGSRAFDPSTTVGKQMFETMKVHTSMSTQEIEKTLIEYMDYLSLKDPKRILKSYPYMLSGGMLQRLMIALALALKPKLIIADEPTTALDTITQYDVLEAFIDIKKHFDCAMIFISHDLTVINKIADRVVVMKNGQLIEHGTRESVLHHPEHVYTKYLLSTKKKINDHFKHVMRGDVHD
>NZ_CP047794.1|WP_000590515.1|2351591_2352341_+|ABC-transporter-ATP-binding-protein
MIKIKDVEKSYQSAHVFKRRRTPIVKGVSFECPIGATIAIIGESGSGKSTLSRMILGIEKPDKGCVTLNDQPMHKKKVRRHQIGAVFQDYTSSLHPFQTVREILFEVMCQCDGQPKDVMEVQAITLLEEVGLSKAYMDKYPNMLSGGEAQRVAIARAICINPKYILFDEAISSLDMSIQTQILDLLIHLRETRQLSYIFITHDIQAATYLCDQLIIFKNGKIEEQIPTSALHKSDNAYTRELIEKQLSF
>NZ_CP047794.1|WP_000675402.1|2352352_2353546_+|MFS-transporter
MKGAMAWPFLRLYILTLMFFSANAILNVFIPLRGHDLGATNTVIGIVMGAYMLTAMVFRPWAGQIIARVGPIKVLRIILIINAIALIIYGFTGLEGYFVARVMQGVCTAFFSMSLQLGIIDALPEEHRSEGVSLYSLFSTIPNLIGPLVAVGIWNANNISLFAIVIIFIALTTTFFGYRVTFAEQEPDTSDKIEKMPFNAVTVFAQFFKNKELLNSGIIMIVASIVFGAVSTFVPLYTVSLGFANAGIFLTIQAIAVVAARFYLRKYIPSDGMWHPKYMVSVLSLLVIASFVVAFGPQVGAIIFYGSAILIGMTQAMVYPTLTSYLSFVLPKVGRNMLLGLFIACADLGISLGGALMGPISDLVGFKWMYLICGMLVIVIMIMSLLKKPTPRPANSL
>NZ_CP047794.1|WP_000072454.1|2353769_2354519_-|CPBP-family-intramembrane-metalloprotease
MSNTNKHYIEEEYATEQSRFFKRDIGFIFLYIFLVNILPIIIVFLTFGLVAVFTQQAPWGFSFPISMNISYLLAVIISLAIFRRMHEDAFVPMIRSQIVASAKYKWHILISFTLSIVLFLLLNHFDIFALNVDSFTVFDIYPLIREYGSISLIAIFSLTIILNTLICQLIFRHILIQELSRLMPLKITIVLSVILETLYYYPYINTWWEFIPALILASSATYLYLKSNRNFMVSYFYQLAVILVLHIFM

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Crispr_ID: NZ_CP047794_9

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP047794_9

2402867-2402945

Orphan

Consensus_repeat	Method
TGCAAGTTGGCGGGGCCCCAACA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP047794_9

>merge|NZ_CP047794|9|2402867-2402945|CRISPRCasFinder
TGCAAGTTGGCGGGGCCCCAACACAGTAGCTGTCGGAAAGTCAGCTTACAATAATGTGCAAGTTGGCGGAGCCCCAACA

>NZ_CP047794|9|9|2402867-2402945|CRISPRCasFinder
TGCAAGTTGGCGGGGCCCCAACA	CAGTAGCTGTCGGAAAGTCAGCTTACAATAATG
TGCAAGTTGGCGGAGCCCCAACA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP047794.1\|WP_000779353.1\|2401919_2402306_+\|GtrA-family-protein	unknown	unknown	gnl\|CDD\|225155
NZ_CP047794.1\|WP_000783428.1\|2412581_2413559_-\|bi-component-gamma-hemolysin-HlgAB/HlgCB-subunit-B	unknown	unknown	gnl\|CDD\|273388
NZ_CP047794.1\|WP_031927724.1\|2411359_2412052_+\|6-carboxyhexanoate--CoA-ligase	unknown	unknown	gnl\|CDD\|224342
NZ_CP047794.1\|WP_000486497.1\|2405038_2406772_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224055
NZ_CP047794.1\|WP_001191927.1\|2398397_2399609_-\|multidrug-effflux-MFS-transporter	unknown	unknown	gnl\|CDD\|340878
NZ_CP047794.1\|WP_031927726.1\|2407002_2407170_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP047794.1\|WP_031927727.1\|2403250_2405014_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224055
NZ_CP047794.1\|WP_078055982.1\|2393795_2394332_+\|IS30-family-transposase	unknown	unknown	gnl\|CDD\|225382
NZ_CP047794.1\|WP_001217929.1\|2407224_2407911_+\|dethiobiotin-synthase	unknown	unknown	gnl\|CDD\|223210
NZ_CP047794.1\|WP_031927729.1\|2399790_2400450_-\|membrane-protein	unknown	unknown	gnl\|CDD\|222878
NZ_CP047794.1\|WP_000482647.1\|2402439_2402547_+\|type-I-toxin-antitoxin-system-Fst-family-toxin	unknown	unknown	unknown
NZ_CP047794.1\|WP_160199145.1\|2394528_2395878_-\|amino-acid-permease	unknown	unknown	gnl\|CDD\|224038
NZ_CP047794.1\|WP_000971544.1\|2410233_2411349_+\|pyridoxal-phosphate-dependent-aminotransferase-family-protein	unknown	unknown	gnl\|CDD\|223234
NZ_CP047794.1\|WP_001046645.1\|2409248_2410256_+\|biotin-synthase-BioB	unknown	unknown	gnl\|CDD\|235755
NZ_CP047794.1\|WP_000456493.1\|2397801_2398275_+\|AraC-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|226231
NZ_CP047794.1\|WP_047212949.1\|2396163_2396970_+\|phosphohydrolase	unknown	unknown	gnl\|CDD\|163441
NZ_CP047794.1\|WP_001080281.1\|2397032_2397689_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|227323
NZ_CP047794.1\|WP_000200954.1\|2412062_2412530_+\|QueT-transporter-family-protein	unknown	unknown	gnl\|CDD\|377623
NZ_CP047794.1\|WP_001176870.1\|2400509_2401652_-\|glycerate-kinase	unknown	unknown	gnl\|CDD\|272872
NZ_CP047794.1\|WP_031927725.1\|2407888_2409247_+\|adenosylmethionine--8-amino-7-oxononanoate-transaminase	unknown	unknown	gnl\|CDD\|273109

Protein	Function_ID	Function_description	E-value
NZ_CP047794.1\|WP_000779353.1\|2401919_2402306_+\|GtrA-family-protein	gnl\|CDD\|225155	COG2246, COG2246, Predicted membrane protein [Function unknown].	6.67138e-23
NZ_CP047794.1\|WP_000783428.1\|2412581_2413559_-\|bi-component-gamma-hemolysin-HlgAB/HlgCB-subunit-B	gnl\|CDD\|273388	TIGR01002, synergohymenotropic_toxin, beta-channel forming cytolysin. This family of cytolytic pore-forming proteins includes alpha toxin and leukocidin F and S subunits from Staphylococcus aureus, hemolysin II of Bacillus cereus, and related toxins. [Cellular processes, Toxin production and resistance].	5.50766e-128
NZ_CP047794.1\|WP_031927724.1\|2411359_2412052_+\|6-carboxyhexanoate--CoA-ligase	gnl\|CDD\|224342	COG1424, BioW, Pimeloyl-CoA synthetase [Coenzyme metabolism].	2.10153e-129
NZ_CP047794.1\|WP_000486497.1\|2405038_2406772_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224055	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms].	1.47122e-143
NZ_CP047794.1\|WP_001191927.1\|2398397_2399609_-\|multidrug-effflux-MFS-transporter	gnl\|CDD\|340878	cd17320, MFS_MdfA_MDR_like, Multidrug transporter MdfA and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily. This family is composed of bacterial multidrug resistance (MDR) transporters including several proteins from Escherichia coli such as MdfA (also called chloramphenicol resistance pump Cmr), EmrD, MdtM, MdtL, bicyclomycin resistance protein (also called sulfonamide resistance protein), and the uncharacterized inner membrane transport protein YdhC. EmrD is a proton-dependent secondary transporter, first identified as an efflux pump for uncouplers of oxidative phosphorylation. It expels a range of drug molecules and amphipathic compounds across the inner membrane of E. coli. Similarly, MdfA is a secondary multidrug transporter that exports a broad spectrum of structurally and electrically dissimilar toxic compounds. These MDR transporters are drug/H+ antiporters (DHA) belonging to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	8.56815e-73
NZ_CP047794.1\|WP_031927727.1\|2403250_2405014_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224055	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms].	7.58914e-146
NZ_CP047794.1\|WP_078055982.1\|2393795_2394332_+\|IS30-family-transposase	gnl\|CDD\|225382	COG2826, Tra8, Transposase and inactivated derivatives, IS30 family [DNA replication, recombination, and repair].	4.46403e-52
NZ_CP047794.1\|WP_001217929.1\|2407224_2407911_+\|dethiobiotin-synthase	gnl\|CDD\|223210	COG0132, BioD, Dethiobiotin synthetase [Coenzyme metabolism].	1.38828e-70
NZ_CP047794.1\|WP_031927729.1\|2399790_2400450_-\|membrane-protein	gnl\|CDD\|222878	PHA02562, 46, endonuclease subunit; Provisional.	0.00755036
NZ_CP047794.1\|WP_160199145.1\|2394528_2395878_-\|amino-acid-permease	gnl\|CDD\|224038	COG1113, AnsP, Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism].	0
NZ_CP047794.1\|WP_000971544.1\|2410233_2411349_+\|pyridoxal-phosphate-dependent-aminotransferase-family-protein	gnl\|CDD\|223234	COG0156, BioF, 7-keto-8-aminopelargonate synthetase and related enzymes [Coenzyme metabolism].	9.08937e-138
NZ_CP047794.1\|WP_001046645.1\|2409248_2410256_+\|biotin-synthase-BioB	gnl\|CDD\|235755	PRK06256, PRK06256, biotin synthase; Validated.	0
NZ_CP047794.1\|WP_000456493.1\|2397801_2398275_+\|AraC-family-transcriptional-regulator	gnl\|CDD\|226231	COG3708, COG3708, Uncharacterized protein conserved in bacteria [Function unknown].	1.71435e-37
NZ_CP047794.1\|WP_047212949.1\|2396163_2396970_+\|phosphohydrolase	gnl\|CDD\|163441	TIGR03729, acc_ester, putative phosphoesterase. Members of this protein family belong to the larger family pfam00149 (calcineurin-like phosphoesterase), a family largely defined by small motifs of metal-chelating residues. The subfamily in this model shows a good but imperfect co-occurrence in species with domain TIGR03715 that defines a novel class of signal peptide typical of the accessory secretory system.	1.35954e-102
NZ_CP047794.1\|WP_001080281.1\|2397032_2397689_-\|hypothetical-protein	gnl\|CDD\|227323	COG4990, COG4990, Uncharacterized protein conserved in bacteria [Function unknown].	2.51069e-72
NZ_CP047794.1\|WP_000200954.1\|2412062_2412530_+\|QueT-transporter-family-protein	gnl\|CDD\|377623	pfam06177, QueT, QueT transporter. This family includes the queT gene encoding a hypothetical integral membrane protein with 5 predicted transmembrane regions. The queT genes in Firmicutes are often preceded by the PreQ1 (7-aminomethyl-7-deazaguanine) riboswitches of two distinct classes, suggesting involvement of the QueT transporters in uptake of a queuosine biosynthetic intermediate.	0.00118414
NZ_CP047794.1\|WP_001176870.1\|2400509_2401652_-\|glycerate-kinase	gnl\|CDD\|272872	TIGR00045, Glycerate_kinase, glycerate kinase. The only characterized member of this family so far is the glycerate kinase GlxK (EC 2.7.1.31) of E. coli. This enzyme acts after glyoxylate carboligase and 2-hydroxy-3-oxopropionate reductase (tartronate semialdehyde reductase) in the conversion of glyoxylate to 3-phosphoglycerate (the D-glycerate pathway) as a part of allantoin degradation. [Energy metabolism, Other].	0
NZ_CP047794.1\|WP_031927725.1\|2407888_2409247_+\|adenosylmethionine--8-amino-7-oxononanoate-transaminase	gnl\|CDD\|273109	TIGR00508, hypothetical_protein_DESPIG_00326, adenosylmethionine-8-amino-7-oxononanoate transaminase. All members of the seed alignment have been demonstrated experimentally to act as EC 2.6.1.62, an enzyme in the biotin biosynthetic pathway. Alternate names include 7,8-diaminopelargonic acid aminotransferase, DAPA aminotransferase, and adenosylmethionine-8-amino-7-oxononanoate aminotransferase. The gene symbol is bioA in E. coli and BIO3 in S. cerevisiae. [Biosynthesis of cofactors, prosthetic groups, and carriers, Biotin].	0

>NZ_CP047794.1|WP_000482647.1|2402439_2402547_+|type-I-toxin-antitoxin-system-Fst-family-toxin
MFNLLIDIMTSALSGCLVAFFAHWLRTRNNKKGDK
>NZ_CP047794.1|WP_000779353.1|2401919_2402306_+|GtrA-family-protein
MKLTQTHAEILKFIIVGGINTLNYYVVYLLLLKLLHIEYMISHITGFIVAFVISYYLNCYFVYRVKPTWRKFISFPITQIVNVSLQTVLLYVFVSWLNLPAEIAPFAGLIITIPITFILSKWILKDSN
>NZ_CP047794.1|WP_001176870.1|2400509_2401652_-|glycerate-kinase
MQLQKIVIAPDSFKESMTAQQVGNIIKQAFTNVYGNTLHYDIIPMADGGEGTTDALMHATGATKYTVIVNDPLMRPIEACYARADEQQIAIIEMAAASGLDLLEKEERNPLYTSSYGTGELIKDALNHGAKTIILGIGGSATNDGGTGMLSALGVKFTDVNGDLLQMNGANLAHIAQIDITNLDSRLKEVTFKVACDVSSPLLGENGATYIYGPQKGADAKMIPKLDFAMSHYHDKIKMCTGKSVNQIPGSGAAGGMGAALLAFCETTLTKGIDVVFDITDFHQRIKDADLVITGEGRMDYQTIFGKTPVGVALAAKQYHIPVIAICGSLGENYQHVYDFGIDSAYSIISSPSTLEDVLQNSEQNLLNTATDIARILKLQ
>NZ_CP047794.1|WP_031927729.1|2399790_2400450_-|membrane-protein
MKRTDKYRDSYQYDNQNQNHRRQSEDASYRQQYAKGDPEEHPERYYNGRDYRREQILEEENEKSRRSKKWLYIIIAILLIIVAIFVTRAILNNDSDKVSNDPKVSQNYKKQVENQDGQINQQVDNAKENIKNNQKTDDIIKNLQNQIDNLKQQEQNKADSKLTQFYQDQINKLTEANNALKNNASQGKIESMLNDINTKFDSIKSKLESLFKDDNGGAN
>NZ_CP047794.1|WP_001191927.1|2398397_2399609_-|multidrug-effflux-MFS-transporter
MQSSKTKTKHFSFLLLITLGVMTAFGPLTIDMYVPSLPKVQGDFGSTTSEIQLTLSFTMIGLALGQFIFGPLSDAFGRKRIAVSILIIFILVSGLSMFVDQLPLFLTLRFIQGLTGGGVIVIAKASAGDKFTGNALAKFLASLMVVNGIITILAPLAGGLALSVATWRSIFTILTIVALIILIGVASQLPKTSKDELKQVNFSSVIKDFGSLLKKPAFIIPMLLQGLTYVMLFSYSSASPFITQKLYNMTPQQFSIMFAVNGVGLIIVSQVVALLVEKLHRHILLIILTIIQVVGVALIILTLTFHLPLWVLLIAFFLNVCPVTSIGPLGFTMAMEERTGGSGNASSLLGLFQFILGGAVAPLVGLKGEFNTSPYMIIIFITAILLVSLQIIYFKMIKKQHVA
>NZ_CP047794.1|WP_000456493.1|2397801_2398275_+|AraC-family-transcriptional-regulator
MEYQLQQLASLTLVGIKETYENGRQAQQHIAGFWQRCYQEGVIADLQLKNNGDLAGILGLCIPELDGKMSYMIAVTGDNSADIEKYDVITLASSKYMVFEAQGSVPKAVQQKMEEVHHYIHQYQADTVKSAPFFELYQDGDTTSEKYITEIWMPVKG
>NZ_CP047794.1|WP_001080281.1|2397032_2397689_-|hypothetical-protein
MNRKILPVKPISQLFPIPMVMGCEGVSAAMMLQYNNQHIPATEIMRHWPTHPNNPHKGYVGHHLFIKLGNYHQTIFPEAYVPFLQKYNPNIVDGTGKSLEDLKGIIDQGQPVLIYHTNLGSKPLLRVFRFDNKPAKQVSNIHVTLLIGYDDYYYYYIDPLWSHIRRGLVLPAIIPNRKQIIKIRKEKMEYSFNSPGRKCIYVQPHSYTIENQQQNKHT
>NZ_CP047794.1|WP_047212949.1|2396163_2396970_+|phosphohydrolase
MKIGTIADLHIDRHNKKTSDDYLEALVEIVKYKNLDILLIAGDISNHYQLTQQFITQLTKQLDIPVKFVPGNHDLWEVESMTTQDIWNNYKSMSQCLVGKPFIVNEEWAIIGHTDWYDYSFAAQRFSLDELQKGKHYGATWQDKERVSWGISDQNLSEIAAEQVKKDILEVGNRRVILVTHVVTHPDFIVPMPHRIFDFYNAFIGTSDFNPLYAMFDIPYSIMGHVHFRKSVMDDGRCYLCPCLGYPRQWRSEDIYQEINETIQIIEI
>NZ_CP047794.1|WP_160199145.1|2394528_2395878_-|amino-acid-permease
MARKLHRELNNRHIQLIAIGGAIGTGLFLGSGQTISLTGPSLLFTYMIIGVVLFAFMRALGELLLSNTRFNSFVDIANEYLGPFGGFVIGWTYWLCWIVSSMSDLTAMGQYFAFWYPQVPNWITVLFIVLILISFNLLGARLFGELEFWFSIIKVVTIIAMVIVGLVLIFFSFKTHYGHASFTNLISHGGMFPGGTFGFLMSFQIAVYSFIGIELIGVTAGETKDPEKTLPKAINNVPIRILLFYIGGLLVIMSVIPWNDIDPNSSPFVKLFTLIGVPFAAGVVNFVVLTAAASATNSGIYSNSRILFGLSQQGLGPKVLNKTNSHGVPYLSMLVSSIALLIAALLNYIFPNAIQLFIYVTTLSTVLFLVVWAMIIVAYLMYLKKHPEAHKNSKFKLIGGKPIAYIILAFFFFVFILLFFSDETRAAIYISPFWFIFLFFFYGSVSIEK
>NZ_CP047794.1|WP_078055982.1|2393795_2394332_+|IS30-family-transposase
MGSKSINNREEFGHYEIDTVWSVRPSTYCLLTIIERKTRYLYASRLNTRKSNVVCNEIINIMKPLLPKSITMDRGKEFALFEQIEDELNCSIYFSDLGCPYQRGSIENVNGLLRQYYPKGTDFANITQKSLDEAVKQINTRPRMIFDYKSSEEMLKYHVSTQNCEPILNDCVRHEPVN
>NZ_CP047794.1|WP_031927727.1|2403250_2405014_+|ABC-transporter-ATP-binding-protein
MNNQTNWIKILSGFASDSKWKIMLSILLSIISVFSGLVPYWAVFKIILMMINNAYTINSIMVYIFIALIAYISQVCCFGASTMLSHITAYEILSEIRKKLAQKLMRLPLGVVESKKIGELKNIFVDKVETIELPLAHMIPEVIGNLLLSAAIFLYIMLIDWRMASALLVTIPISIFAFKKVMSGFNETYAEQMKSNNYMNSAIVEFIEGIEVIKTFNQSQSSYKKYKDAVDNYKIHTLNWFKNTWGYMNLGASVLPSTFLGILPVGMYLISINQLNYAEFFLCIVLSLGVVAPIKNFTNYVNHLKSIQYALTEMNQILSLEELVLSTKFKKPQHYEIAFNNVGFSYNKDKDDLVFKHLSFTVPENNFIAIVGASGSGKSTIAKLISRYWDVTSGEITIGGINIKDIESKQLNDLVGFVGQDNFLLNLTFKENIKLGNPEATDEAVEKAAKLAQCHEFIEKLPDGYDTNVGTVGDKLSGGEKQRVTIARMILKDAPIIVLDEATAYVDPDNEQKIQEALNVLTQDKTLIVIAHRLSTIQHADQIIVLGKQQILEKGSHHLLLKLNGNYKKMWDTHMHTKDWGINTGHN
>NZ_CP047794.1|WP_000486497.1|2405038_2406772_+|ABC-transporter-ATP-binding-protein
MFQITFKILNWIRPYKARMILGFSMSFLNAIFIALPIFLAAKIFNNVLSHKPIYMKDILNVVIIMVLLVIGRFITAYFKSKSHESIAYEMSAKERLDIGDKLKNVRLGYFNSHHSNELTTIVTTDLTFLENFAMKMVDVVVNGYILITVLILSLLVVSWQVSLLACIGVLLSFFAIQLLERKSRQNAPAYHNVQNQLVEKVLEVIRGIQVIKSFAKENTSLKSFNQAVNESKRINTKIEMQYIPFNLLHLLSLKVVSIMIVLVACLLYMNHSIDLPTLIMISIFSFVIFDSVENINSAAHVLEMIDMTIDDIEKIKNAPELDENGKNLTIKNENIAFQNVNFSYDDKQVIKNVNFEIPTQTSTAIIGPSGSGKSTLCHLLLRFYDIDDGNIRIDGVDIKDMTLSTLMSKISAVFQKVYLFNDTIENNILFGNPGATKEEIIRAAKQACCHDFIMSLPEGYQTMLNEKGSNLSGGERQRISIARAILKDAPIIILDEATASIDPENEHLIQHAIDELSKGKTVITIAHKLETIKNADQIIVLCDGEIIQRGSHDELIQKPGMYQDFITIKSKSAGWKL
>NZ_CP047794.1|WP_031927726.1|2407002_2407170_+|hypothetical-protein
MQLLILTDIFYRITVYICPNSVRSLSHFNSKVKILPKFKVILRSLNSCFLEKHAP
>NZ_CP047794.1|WP_001217929.1|2407224_2407911_+|dethiobiotin-synthase
MRIFITSTNTDVGKTYVTKHLYNALKTRGHRVCVFKPFQTEERQDGTFPDLEVFKNECDLSYDITSLYTFKQPVSPHLAFKMANQIFLNKQCVLDKVKVLDKEFDFILIEGAGGIAVPIYEGTDDFYMTKDLINDCADCVISVLPSKLGAISDAIVHQDYVNQNVSASNFLIMNRYTDSYIEKDNQMTIGKLTNKTVYTFEEYATYENFSEAFLKQLIGVKNELHTTT
>NZ_CP047794.1|WP_031927725.1|2407888_2409247_+|adenosylmethionine--8-amino-7-oxononanoate-transaminase
MNYTQQLKQKDSEYVWHPFTQMGVYSKEEAIIIEKGKGSYLYDTNGNKYLDGYASLWVNVHGHNNKYLNKVIKKQLNKIAHSTLLGSSNIPSIELAEKLIEITPSNLRKVFYSDTGSASVEIAIKMAYQYWKNIDREKYAKKNKFITLNHGYHGDTIGAVSVGGIKTFHKIFKDLIFENIQVESPSFYRSNYDTENEMMTAILTNIEQILIERNDEIAGFILEPLIQGATGLFVHPKGFLKEVEKLCKKYDVLLICDEVAVGFGRTGKMFACNHEDVQPDIMCLGKAITGGYLPLAATLTSQKIYDAFLSDSHGVNTFFHGHTYTGNQIVCTVALENIRLYEKRNLLSHIETTSSTLEKQLHALKRHRNVGDVRGRGLMFGVELVTDKDSKTPLEIEKVERIVRNCKENGLMIRNLENVITFVPVLSMSNKEVKTMVRIFKKAVHNILDRKC
>NZ_CP047794.1|WP_001046645.1|2409248_2410256_+|biotin-synthase-BioB
MNLAKRILQGEQLTKETVLKIYEDTNIDTLDLLNEAYILRKHYFGKKVKLNMILNAKSGICPENCGYCGQSRDIKQKQRYALIPEEQIIDGAKVAHDNHIGTYCIVMSGRGPSDKEVDHISNTVRTIKSQHPQLKICACLGLTNDEQAKKLKSAGVDRYNHNINTSENYHDNVVTTHSYKDRTDTIELMKANNISPCSGVICGMGESNQDIVDMAFALKEMDADSIPINFLHPIKGTKFGSMDDLTPMKCLRIVALFRLINPTKEIRIAGGREVNLRSLQPLALKAANSIFVGDYLITGGQPNQLDYDMINDLGFEIDYDTCENKENKNDVSRAN
>NZ_CP047794.1|WP_000971544.1|2410233_2411349_+|pyridoxal-phosphate-dependent-aminotransferase-family-protein
MMFQEQIDLLQQKGLYRSLKSVGYIDRQYIEVENKRCTNYTSNDYLGLGQIAFDKDDFERFMRKYSYHLSSSRLISGSSTAYEEIETMLAGWLGYSACTILNSGYDANLALFNIFKNTNCVVFSDQENHASIIDGIKLSGLEKVIYKHLDIADLEKRLAEYPNQNIQKIIISDSVFSTNGDLVDIGQLVSLKHKYNATLILDVSHSFGIENYSNYQGIDILTSSLSKACGAYGGVILSSNDVKDMLINHGRPLIYSSSLPIYNLYFIKRNIEKLINADDRRTKLNSLSKYFNQKLKALNVNYNSSNSPIKFIEFDDIEAAENIHQTLLKHHVFTSYLRYPTVTKPMLRISLSYFHTEQDVDRLFEILHQED
>NZ_CP047794.1|WP_031927724.1|2411359_2412052_+|6-carboxyhexanoate--CoA-ligase
MYSIKMRSSNQDVHISGAETICEFDKIEQTVQRFYNKGFFHENGQPDFLNIKIQKIMEPIQQIKALQIIEDDKANLQKLTQECGVTEQALNQGMTYIKNETVYTGAIILSAISGKRLDSFGQRGIRATHFSFEDINNKGDLNERVTDALAIASCINAHPYVKGELCVSDDLTYTTGYFASAKIGYHRLFDIKPVNTRYGGRIIFVDDRIDLHHYISFLESTPKQVVYETV
>NZ_CP047794.1|WP_000200954.1|2412062_2412530_+|QueT-transporter-family-protein
MTSKDITQISVIAAILTILAVLKIPSIIPGLDFQLSAPAALLILAFFGIKKYFLGGLLSSVLLLIFGVFNPINVIISIIFRVIAIAVVYLLKINVLSLVLASVLGSLVSRLLLSIILNLPVWVVLLNAIPGVIFTLIVAIPLYLTLRKRMAVLLR
>NZ_CP047794.1|WP_000783428.1|2412581_2413559_-|bi-component-gamma-hemolysin-HlgAB/HlgCB-subunit-B
MKMNKLVKSSVATSMALLLLSGTANAEGKITPVSVKKVDDKVTLYKTTATADSDKFKISQILTFNFIKDKSYDKDTLVLKATGNINSGFVKPNPNDYDFSKLYWGAKYNVSISSQSNDSVNVVDYAPKNQNEEFQVQNTLGYTFGGDISISNGLSGGLNGNTAFSETINYKQESYRTTLSRNTNYKNVGWGVEAHKIMNNGWGPYGRDSFHPTYGNELFLAGRQSSAYAGQNFIAQHQMPLLSRSNFNPEFLSVLSHRQDGAKKSKITVTYQREMDLYQIRWNGFYWAGANYKNFKTRTFKSTYEIDWENHKVKLLDTKETENNK

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Crispr_ID: NZ_CP047794_10

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP047794_10

2418204-2418295

Orphan

Consensus_repeat	Method
TTCGCAGAAAATAAAGGAACGCA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP047794_10

>merge|NZ_CP047794|10|2418204-2418295|CRISPRCasFinder
TTCGCAGAAAATAAAGGAACGCAGTTGGACGTAAAACGTCAACTGCATAAGCCTTTCTAGCTCATAAAATTCGCAGAAAATAAAGGAACGCA

>NZ_CP047794|10|10|2418204-2418295|CRISPRCasFinder
TTCGCAGAAAATAAAGGAACGCA	GTTGGACGTAAAACGTCAACTGCATAAGCCTTTCTAGCTCATAAAA
TTCGCAGAAAATAAAGGAACGCA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP047794.1\|WP_000819846.1\|2426169_2426532_+\|DUF4467-domain-containing-protein	unknown	unknown	gnl\|CDD\|291399
NZ_CP047794.1\|WP_047212940.1\|2418489_2419356_+\|cation-transporter	unknown	unknown	gnl\|CDD\|223131
NZ_CP047794.1\|WP_000783428.1\|2412581_2413559_-\|bi-component-gamma-hemolysin-HlgAB/HlgCB-subunit-B	unknown	unknown	gnl\|CDD\|273388
NZ_CP047794.1\|WP_031927724.1\|2411359_2412052_+\|6-carboxyhexanoate--CoA-ligase	unknown	unknown	gnl\|CDD\|224342
NZ_CP047794.1\|WP_000762708.1\|2420522_2420627_-\|putative-metal-homeostasis-protein	unknown	unknown	unknown
NZ_CP047794.1\|WP_001807148.1\|2417887_2418007_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP047794.1\|WP_001125208.1\|2419682_2420369_+\|2,3-diphosphoglycerate-dependent-phosphoglycerate-mutase	unknown	unknown	gnl\|CDD\|184518
NZ_CP047794.1\|WP_000038972.1\|2420800_2422240_+\|multidrug-efflux-MFS-transporter-MdeA	unknown	unknown	gnl\|CDD\|129794
NZ_CP047794.1\|WP_000162805.1\|2426550_2427150_+\|DsbA-family-protein	unknown	unknown	gnl\|CDD\|224565
NZ_CP047794.1\|WP_001217929.1\|2407224_2407911_+\|dethiobiotin-synthase	unknown	unknown	gnl\|CDD\|223210
NZ_CP047794.1\|WP_000825931.1\|2422360_2423140_+\|transporter-substrate-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|270429
NZ_CP047794.1\|WP_031927725.1\|2407888_2409247_+\|adenosylmethionine--8-amino-7-oxononanoate-transaminase	unknown	unknown	gnl\|CDD\|273109
NZ_CP047794.1\|WP_000200954.1\|2412062_2412530_+\|QueT-transporter-family-protein	unknown	unknown	gnl\|CDD\|377623
NZ_CP047794.1\|WP_000971544.1\|2410233_2411349_+\|pyridoxal-phosphate-dependent-aminotransferase-family-protein	unknown	unknown	gnl\|CDD\|223234
NZ_CP047794.1\|WP_001046645.1\|2409248_2410256_+\|biotin-synthase-BioB	unknown	unknown	gnl\|CDD\|235755
NZ_CP047794.1\|WP_000615459.1\|2423836_2424568_+\|amino-acid-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224051
NZ_CP047794.1\|WP_000792566.1\|2416482_2417793_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|288473
NZ_CP047794.1\|WP_000479576.1\|2423120_2423840_+\|amino-acid-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|223836
NZ_CP047794.1\|WP_001012216.1\|2424664_2425915_-\|FemA/FemB-family-glycyltransferase-FmhA	unknown	unknown	gnl\|CDD\|367067
NZ_CP047794.1\|WP_047212943.1\|2413560_2414508_-\|bi-component-gamma-hemolysin-HlgCB-subunit-C	unknown	unknown	gnl\|CDD\|369625

Protein	Function_ID	Function_description	E-value
NZ_CP047794.1\|WP_000819846.1\|2426169_2426532_+\|DUF4467-domain-containing-protein	gnl\|CDD\|291399	pfam14729, DUF4467, Domain of unknown function with cystatin-like fold (DUF4467). Large family of predicted lipoproteins from Gram-positive bacteria Experimentally determined structure shows a cystatitin-like fold, allowing us to classify this family in the NFT2 clan, despite lack of any detectable sequence similarity between members of this family and other families in this clan.	3.44071e-31
NZ_CP047794.1\|WP_047212940.1\|2418489_2419356_+\|cation-transporter	gnl\|CDD\|223131	COG0053, MMT1, Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism].	7.66469e-90
NZ_CP047794.1\|WP_000783428.1\|2412581_2413559_-\|bi-component-gamma-hemolysin-HlgAB/HlgCB-subunit-B	gnl\|CDD\|273388	TIGR01002, synergohymenotropic_toxin, beta-channel forming cytolysin. This family of cytolytic pore-forming proteins includes alpha toxin and leukocidin F and S subunits from Staphylococcus aureus, hemolysin II of Bacillus cereus, and related toxins. [Cellular processes, Toxin production and resistance].	5.50766e-128
NZ_CP047794.1\|WP_031927724.1\|2411359_2412052_+\|6-carboxyhexanoate--CoA-ligase	gnl\|CDD\|224342	COG1424, BioW, Pimeloyl-CoA synthetase [Coenzyme metabolism].	2.10153e-129
NZ_CP047794.1\|WP_000615459.1\|2423836_2424568_+\|amino-acid-ABC-transporter-ATP-binding-protein	gnl\|CDD\|224051	COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism].	4.20318e-144
NZ_CP047794.1\|WP_001125208.1\|2419682_2420369_+\|2,3-diphosphoglycerate-dependent-phosphoglycerate-mutase	gnl\|CDD\|184518	PRK14119, gpmA, phosphoglyceromutase; Provisional.	3.52864e-167
NZ_CP047794.1\|WP_000038972.1\|2420800_2422240_+\|multidrug-efflux-MFS-transporter-MdeA	gnl\|CDD\|129794	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. [Cellular processes, Toxin production and resistance, Transport and binding proteins, Other].	4.56422e-92
NZ_CP047794.1\|WP_000162805.1\|2426550_2427150_+\|DsbA-family-protein	gnl\|CDD\|224565	COG1651, DsbG, Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones].	6.8825e-31
NZ_CP047794.1\|WP_001217929.1\|2407224_2407911_+\|dethiobiotin-synthase	gnl\|CDD\|223210	COG0132, BioD, Dethiobiotin synthetase [Coenzyme metabolism].	1.38828e-70
NZ_CP047794.1\|WP_000825931.1\|2422360_2423140_+\|transporter-substrate-binding-domain-containing-protein	gnl\|CDD\|270429	cd13711, PBP2_Ngo0372_TcyA, Substrate binding domain of ABC transporters involved in cystine import; the type 2 periplasmic binding protein fold. This subgroup includes cystine-binding domain of periplasmic receptor-dependent ATP-binding cassette transporters from Neisseria gonorrhoeae and Bacillus subtilis and their related proteins. Cystine is an oxidized dimeric form of cysteine that is required for optimal bacterial growth. In Bacillus subtilis, three ABC transporters, TcyJKLMN (YtmJKLMN), TcyABC (YckKJI), and YxeMNO are involved in uptake of cystine. Likewise, three uptake systems were identified in Salmonella enterica serovar Typhimurium, while in Escherichia coli, two transport systems seem to be involved in cystine uptake. Moreover, L-cystine limitation was shown to prevent virulence of Neisseria gonorrhoeae; thus, its L-cystine solute receptor (Ngo0372) may be suited as target for an antimicrobial vaccine. The cystine receptor belongs to the type 2 periplasmic binding fold protein superfamily (PBP2). The PBP2 proteins are typically comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two receptor cytoplasmically-located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	2.35689e-100
NZ_CP047794.1\|WP_031927725.1\|2407888_2409247_+\|adenosylmethionine--8-amino-7-oxononanoate-transaminase	gnl\|CDD\|273109	TIGR00508, hypothetical_protein_DESPIG_00326, adenosylmethionine-8-amino-7-oxononanoate transaminase. All members of the seed alignment have been demonstrated experimentally to act as EC 2.6.1.62, an enzyme in the biotin biosynthetic pathway. Alternate names include 7,8-diaminopelargonic acid aminotransferase, DAPA aminotransferase, and adenosylmethionine-8-amino-7-oxononanoate aminotransferase. The gene symbol is bioA in E. coli and BIO3 in S. cerevisiae. [Biosynthesis of cofactors, prosthetic groups, and carriers, Biotin].	0
NZ_CP047794.1\|WP_000200954.1\|2412062_2412530_+\|QueT-transporter-family-protein	gnl\|CDD\|377623	pfam06177, QueT, QueT transporter. This family includes the queT gene encoding a hypothetical integral membrane protein with 5 predicted transmembrane regions. The queT genes in Firmicutes are often preceded by the PreQ1 (7-aminomethyl-7-deazaguanine) riboswitches of two distinct classes, suggesting involvement of the QueT transporters in uptake of a queuosine biosynthetic intermediate.	0.00118414
NZ_CP047794.1\|WP_000971544.1\|2410233_2411349_+\|pyridoxal-phosphate-dependent-aminotransferase-family-protein	gnl\|CDD\|223234	COG0156, BioF, 7-keto-8-aminopelargonate synthetase and related enzymes [Coenzyme metabolism].	9.08937e-138
NZ_CP047794.1\|WP_001046645.1\|2409248_2410256_+\|biotin-synthase-BioB	gnl\|CDD\|235755	PRK06256, PRK06256, biotin synthase; Validated.	0
NZ_CP047794.1\|WP_000792566.1\|2416482_2417793_-\|hypothetical-protein	gnl\|CDD\|288473	pfam11621, Sbi-IV, C3 binding domain 4 of IgG-bind protein SBI. This family of proteins represents Sbi domain IV which binds the central complement protein C3. Sbi-IV interacts with Sbi-III to induce a consumption of complement via alternative pathway activation. When not interacting with Sbi-III, Sbi-IV inhibits the alternative pathway without complement consumption. The structure of Sbi-IV consists of a three-helix bundle fold.	1.01337e-26
NZ_CP047794.1\|WP_000479576.1\|2423120_2423840_+\|amino-acid-ABC-transporter-permease	gnl\|CDD\|223836	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism].	4.98247e-78
NZ_CP047794.1\|WP_001012216.1\|2424664_2425915_-\|FemA/FemB-family-glycyltransferase-FmhA	gnl\|CDD\|367067	pfam02388, FemAB, FemAB family. The femAB operon codes for two nearly identical approximately 50-kDa proteins involved in the formation of the Staphylococcal pentaglycine interpeptide bridge in peptidoglycan. These proteins are also considered as a factor influencing the level of methicillin resistance.	0
NZ_CP047794.1\|WP_047212943.1\|2413560_2414508_-\|bi-component-gamma-hemolysin-HlgCB-subunit-C	gnl\|CDD\|369625	pfam07968, Leukocidin, Leukocidin/Hemolysin toxin family.	4.1102e-93

>NZ_CP047794.1|WP_001807148.1|2417887_2418007_+|hypothetical-protein
MLTNRLTSVNYVKKRLIQNIQRILSKEVLYGEMQWFANK
>NZ_CP047794.1|WP_000792566.1|2416482_2417793_-|hypothetical-protein
MKNKYISKLLVGAATITLATMISNGEAKASENTQQTSTKHQTTQNNYVTDQQKAFYQVLHLKGITEEQRNQYIKTLREHPERAQEVFSESLKDSKNPDRRVAQQNAFYNVLKNDNLTEQEKNNYIAQIKENPDRSQQVWVESVQSSKAKERQNIENADKAIKDFQDNKAPHDKSAAYEANSKLPKDLRDKNNRFVEKVSIEKAIVRHDERVKSANDAISKLNEKDSIENRRLAQREVNKAPMDVQKHLQKQLDALVAQKDAEKKVAPKVEAPQIQSPQIEKPKAESPKVEVPQIQSPKVEVPQSKLLGYYQSLKDSFNYGYKYLTDTYKSYKEKYDTAKYYTDKYFKYKGTIDKTVLSVFGNGYKSYIQPLKVEDQKNYVSKSYAQVRNYVTETLNTGKVLYAFYQNPKVVKAAITTAETASSIKNIFSSFTSFFK
>NZ_CP047794.1|WP_047212943.1|2413560_2414508_-|bi-component-gamma-hemolysin-HlgCB-subunit-C
MLRNKILATTLSVSLLAPLANPLLENAKAANDTEDIGKGSDIEIIKRTEDKTSNKWGVTQNIQFDFVKDKKYNKDALILKMQGFISSRTTYYNYKKTNHVKAMRWPFQYNIGLKTNDKYVSLINYLPKNKIESTNVSQTLGYNIGGNFQSAPSLGGNGSFNYSKSISYTQQNYVSEVEQQNSKSVLWGVKANSFATESGQKSAFDSDLFVGYKPHSKDPRDYFVPDSELPPLVQSGFNPSFIATVSHEKGSSDTSEFEITYGRNMDVTHAIKRSTHYGNSYLDGHRVHNAFVNRNYTVKYEVNWKTHEIKVKGQN
>NZ_CP047794.1|WP_000783428.1|2412581_2413559_-|bi-component-gamma-hemolysin-HlgAB/HlgCB-subunit-B
MKMNKLVKSSVATSMALLLLSGTANAEGKITPVSVKKVDDKVTLYKTTATADSDKFKISQILTFNFIKDKSYDKDTLVLKATGNINSGFVKPNPNDYDFSKLYWGAKYNVSISSQSNDSVNVVDYAPKNQNEEFQVQNTLGYTFGGDISISNGLSGGLNGNTAFSETINYKQESYRTTLSRNTNYKNVGWGVEAHKIMNNGWGPYGRDSFHPTYGNELFLAGRQSSAYAGQNFIAQHQMPLLSRSNFNPEFLSVLSHRQDGAKKSKITVTYQREMDLYQIRWNGFYWAGANYKNFKTRTFKSTYEIDWENHKVKLLDTKETENNK
>NZ_CP047794.1|WP_000200954.1|2412062_2412530_+|QueT-transporter-family-protein
MTSKDITQISVIAAILTILAVLKIPSIIPGLDFQLSAPAALLILAFFGIKKYFLGGLLSSVLLLIFGVFNPINVIISIIFRVIAIAVVYLLKINVLSLVLASVLGSLVSRLLLSIILNLPVWVVLLNAIPGVIFTLIVAIPLYLTLRKRMAVLLR
>NZ_CP047794.1|WP_031927724.1|2411359_2412052_+|6-carboxyhexanoate--CoA-ligase
MYSIKMRSSNQDVHISGAETICEFDKIEQTVQRFYNKGFFHENGQPDFLNIKIQKIMEPIQQIKALQIIEDDKANLQKLTQECGVTEQALNQGMTYIKNETVYTGAIILSAISGKRLDSFGQRGIRATHFSFEDINNKGDLNERVTDALAIASCINAHPYVKGELCVSDDLTYTTGYFASAKIGYHRLFDIKPVNTRYGGRIIFVDDRIDLHHYISFLESTPKQVVYETV
>NZ_CP047794.1|WP_000971544.1|2410233_2411349_+|pyridoxal-phosphate-dependent-aminotransferase-family-protein
MMFQEQIDLLQQKGLYRSLKSVGYIDRQYIEVENKRCTNYTSNDYLGLGQIAFDKDDFERFMRKYSYHLSSSRLISGSSTAYEEIETMLAGWLGYSACTILNSGYDANLALFNIFKNTNCVVFSDQENHASIIDGIKLSGLEKVIYKHLDIADLEKRLAEYPNQNIQKIIISDSVFSTNGDLVDIGQLVSLKHKYNATLILDVSHSFGIENYSNYQGIDILTSSLSKACGAYGGVILSSNDVKDMLINHGRPLIYSSSLPIYNLYFIKRNIEKLINADDRRTKLNSLSKYFNQKLKALNVNYNSSNSPIKFIEFDDIEAAENIHQTLLKHHVFTSYLRYPTVTKPMLRISLSYFHTEQDVDRLFEILHQED
>NZ_CP047794.1|WP_001046645.1|2409248_2410256_+|biotin-synthase-BioB
MNLAKRILQGEQLTKETVLKIYEDTNIDTLDLLNEAYILRKHYFGKKVKLNMILNAKSGICPENCGYCGQSRDIKQKQRYALIPEEQIIDGAKVAHDNHIGTYCIVMSGRGPSDKEVDHISNTVRTIKSQHPQLKICACLGLTNDEQAKKLKSAGVDRYNHNINTSENYHDNVVTTHSYKDRTDTIELMKANNISPCSGVICGMGESNQDIVDMAFALKEMDADSIPINFLHPIKGTKFGSMDDLTPMKCLRIVALFRLINPTKEIRIAGGREVNLRSLQPLALKAANSIFVGDYLITGGQPNQLDYDMINDLGFEIDYDTCENKENKNDVSRAN
>NZ_CP047794.1|WP_031927725.1|2407888_2409247_+|adenosylmethionine--8-amino-7-oxononanoate-transaminase
MNYTQQLKQKDSEYVWHPFTQMGVYSKEEAIIIEKGKGSYLYDTNGNKYLDGYASLWVNVHGHNNKYLNKVIKKQLNKIAHSTLLGSSNIPSIELAEKLIEITPSNLRKVFYSDTGSASVEIAIKMAYQYWKNIDREKYAKKNKFITLNHGYHGDTIGAVSVGGIKTFHKIFKDLIFENIQVESPSFYRSNYDTENEMMTAILTNIEQILIERNDEIAGFILEPLIQGATGLFVHPKGFLKEVEKLCKKYDVLLICDEVAVGFGRTGKMFACNHEDVQPDIMCLGKAITGGYLPLAATLTSQKIYDAFLSDSHGVNTFFHGHTYTGNQIVCTVALENIRLYEKRNLLSHIETTSSTLEKQLHALKRHRNVGDVRGRGLMFGVELVTDKDSKTPLEIEKVERIVRNCKENGLMIRNLENVITFVPVLSMSNKEVKTMVRIFKKAVHNILDRKC
>NZ_CP047794.1|WP_001217929.1|2407224_2407911_+|dethiobiotin-synthase
MRIFITSTNTDVGKTYVTKHLYNALKTRGHRVCVFKPFQTEERQDGTFPDLEVFKNECDLSYDITSLYTFKQPVSPHLAFKMANQIFLNKQCVLDKVKVLDKEFDFILIEGAGGIAVPIYEGTDDFYMTKDLINDCADCVISVLPSKLGAISDAIVHQDYVNQNVSASNFLIMNRYTDSYIEKDNQMTIGKLTNKTVYTFEEYATYENFSEAFLKQLIGVKNELHTTT
>NZ_CP047794.1|WP_047212940.1|2418489_2419356_+|cation-transporter
MSHNENLKLAQRGAYLSLIVYIILSIVKYVTGFVFNSAAVRADALNNMTDIIVSLAVIIGLKISIKPADRNHPYGHLKSENISSLLVSFVIMFVGIQVVIQNALRLFKEDDVVPNAITIIVSLISGLVMLIVFAVNQRLAKRTKSSSLNSAAKDNLSDSLVSIGTAIGLIFTQIGFPIVDIILATLLGLLIVYTGFGIFKEAIFMLSDGFNETELEAYRNDILEVDEVQEVKSIKGRYHGSSVFIDVTIVVDANLSLVEAHQICDNVEHHLHKKGISSVYVHPEPDHL
>NZ_CP047794.1|WP_001125208.1|2419682_2420369_+|2,3-diphosphoglycerate-dependent-phosphoglycerate-mutase
MPKLILCRHGQSEWNAKNLFTGWEDVNLSEQGINEATRAGEKVRENNIAIDVAFTSLLTRALDTTHYILTESKQQWIPVYKSWRLNERHYGGLQGLNKDDARKEFGEEQVHIWRRSYDVKPPAETEEQREAYLADRRYNHLDKRMMPYSESLKDTLVRVIPFWTDHISQYLLDGQTVLVSAHGNSIRALIKYLEDVSDEDIINYEIKTGAPLVYELTDDLEVIDKYYL
>NZ_CP047794.1|WP_000762708.1|2420522_2420627_-|putative-metal-homeostasis-protein
MKLDLQTARRNLNSPNIKTRKRALKIIKQHKRAK
>NZ_CP047794.1|WP_000038972.1|2420800_2422240_+|multidrug-efflux-MFS-transporter-MdeA
MSKKQKLTMIITMLMGGFFGLLNETLLVTALPSIMKDFEISYTQVQWLTTAFLLTNGIVIPLSALVIQRYTTRQVFLVGITIFFLGTLLGGLSPHFATLLVARIIQALGAGIMMPLMMTTILDVFQPHERGKYMGIFGLVIGLAPAIGPTLSGYLVEYFNWRSLFHVVAPIAAVTFLIGFKTIKNVGTTIKVPIDFISVIFSVLGFGGLLYGTSSISEKGFDNPIVLVSMIGGIALVALFVLRQYRLSTPLLNFAVFKNKQFTVGIIIMGVTMVSMIGSETILPIFVQNLLHRSALDSGLTLLPGAIVMAFMSMTSGALYEKFGPRKLALVGMAIVVITTAYFVVMDEQTSTIMLATVYAIRMVGIALGLIPVMTHTMNQLKPEMNAHGSSMTNTVQQIAGSIGTAALITILSHASKNFSPTMSDYNGMNKIDMMNQIKVDTMLHGYHAGFLFALLITVVSFFCSFMLQGKKKEVDSRQ
>NZ_CP047794.1|WP_000825931.1|2422360_2423140_+|transporter-substrate-binding-domain-containing-protein
MKRLLFVMIAFVFILAACGNNSSKDKEASKDSKTINVGTEGTYAPFSFHDKDGKLTGYDIDVIKAVAKEEGLKLKFNETSWDSMFAGLDAGRFDVIANQVGINPDREKKYKFSKPYTFSSAVLVIRENEKDIKDFDDVKGKKLAQTFTSNYGKLAKDKGADITKVDGFNQSMDLLLSKRVDGTFNDSLSYLDYKKQKPNAKIKAIKGNAEQSRSAFAFSKKVDDETVQKFNDGLKKIEENGELAKIGKKWFGQDVSKSK
>NZ_CP047794.1|WP_000479576.1|2423120_2423840_+|amino-acid-ABC-transporter-permease
MFLNLNSEQQHALDAAKQAFGPMLEGLVKYSIPITLVTFVLGLIIALFTALMRISTSKILRSISRVYVSIIRGTPMIVQLFIIFYGIPELGRLLTNDADNQWTLAPVVAAIIGLSLNVGAYASEIIRGGIISIPKGQTEAAYSIGMTYGQTIQRIILPQAIRVSIPALGNTFLSLIKDTSLLGFILVAEMFRKAQEVASTTYEYLTIYVLVALMYWVVCFIISIIQGIYESYIERGYRS
>NZ_CP047794.1|WP_000615459.1|2423836_2424568_+|amino-acid-ABC-transporter-ATP-binding-protein
MIQLNNIHKSFNDVEVIKGIDLSVEQGEVVTLIGRSGSGKTTLLRMINALEIPTEGTVYVNGKTYTSKDKKSQIEVRKQSGMVFQSYNLFPHKTALENVMEGLITVKKLKKDEARGKSLELLEKVGLTHVKDQRPHALSGGQQQRVAIARALAMNPKVMLFDEPTSALDPELVNDVLKVIKDLANEGMTMVIVTHEMRFAKEVSNNIVFIHEGMIGEQGAPEEMFNRPKTEELKRFLNVINEE
>NZ_CP047794.1|WP_001012216.1|2424664_2425915_-|FemA/FemB-family-glycyltransferase-FmhA
MNFVTLTSDEFNAFTTKHFSHYTQSAIHYNHKVDLKGDVHLVGVKDDNGQVIAGCLLTEARTLKFFKYFYTHRGPVMDYTNQSLVAFFFKALTSYLKKQNCLYVLVDPYLIENLRNADGEIVKSYDNRAFVRTMDTLGYKHQGFPVGYDSMSQIRWLSVLDLKDKTEDQLLKEMDYQTRRNIKKTYDIGVKTKTLTIDETQTFFDLFHMAEEKHGFKFRELPYFEEMQKLYDDHAMLKLAYIDLNEYLKTLQLKQQQLTAELSGVEEALEESPNSKKNKTKRTQLEQQLNSNKRKIDNTIEQIEQDGAVLNLASALFIYNEHEVYYLSSGSNPKYNAYMGAYHLQWEMIKFAKAHHIDRYNFYGITGDFSESSEDYGVQQFKKGFNAHVEEYIGDFIKPIKPLLYKVKTYLNHKRR
>NZ_CP047794.1|WP_000819846.1|2426169_2426532_+|DUF4467-domain-containing-protein
MKRFVATVLLLLVFISGCGNDKYVKEIDEAVKIQNQKQEQLAKKGNGDRVDHFERKDANIYVYDKDKIIILAYKPLSNDDEVHYYAYNFSDKRVSYKQDFDSRRYYQQHDADYHEENMTN
>NZ_CP047794.1|WP_000162805.1|2426550_2427150_+|DsbA-family-protein
MTKKLLTLFIVSMLILTACGKKESATTSSKNGKPLVVIYGDYKCPYCKELDEKVMPKLRKNYIDDHKVEYQFVNLAFLGKDSIVGSRASHAVLMYAPKSFLDFQKQLFAAQQDENKEWLTKELLDKHIKQLHLDKETENKIIKDYKTKDSKSWKAAEKDKKIAKDNHIKTTPTAFINGEKVEDPYDYESYEKLLKDKIK

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Crispr_ID: NZ_CP047794_11

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP047794_11

2685166-2685251

Orphan

Consensus_repeat	Method
TGCATAAGAGCCCCTAACAACTAAAGTTG	CRISPRCasFinder

1 spacers

csa3

The CRISPR arrays of NZ_CP047794_11

>merge|NZ_CP047794|11|2685166-2685251|CRISPRCasFinder
TGCATAAGAGCCCCTAACAACTAAAGTTGAAAAATAGGAGCGCCTGCGCTAAGCGCATGCATAAGAGCCCCTAACAACTAAAGTTG

>NZ_CP047794|11|11|2685166-2685251|CRISPRCasFinder
TGCATAAGAGCCCCTAACAACTAAAGTTG	AAAAATAGGAGCGCCTGCGCTAAGCGCA
TGCATAAGAGCCCCTAACAACTAAAGTTG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP047794.1\|WP_000019739.1\|2686624_2687605_-\|CDF-family-zinc-efflux-transporter-CzrB	unknown	unknown	gnl\|CDD\|224151
NZ_CP047794.1\|WP_031927658.1\|2678029_2679835_+\|glutamine--fructose-6-phosphate-transaminase-(isomerizing)	unknown	unknown	gnl\|CDD\|234729
NZ_CP047794.1\|WP_000070865.1\|2693495_2693939_+\|DNA-starvation/stationary-phase-protection-protein	unknown	unknown	gnl\|CDD\|223854
NZ_CP047794.1\|WP_001802298.1\|2684657_2684762_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP047794.1\|WP_001024091.1\|2688078_2688744_+\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|187554
NZ_CP047794.1\|WP_000908193.1\|2680066_2680849_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224044
NZ_CP047794.1\|WP_141226525.1\|2680916_2681774_+\|Cof-type-HAD-IIB-family-hydrolase	unknown	unknown	gnl\|CDD\|223635
NZ_CP047794.1\|WP_000927349.1\|2673643_2675776_-\|BglG-family-transcription-antiterminator	unknown	unknown	gnl\|CDD\|226234
NZ_CP047794.1\|WP_000123394.1\|2691051_2692425_+\|EVE-domain-containing-protein	unknown	unknown	gnl\|CDD\|376640
NZ_CP047794.1\|WP_047213683.1\|2689178_2690117_+\|class-I-mannose-6-phosphate-isomerase	unknown	unknown	gnl\|CDD\|224399
NZ_CP047794.1\|WP_000003759.1\|2687606_2687927_-\|Zn(II)-responsive-metalloregulatory-transcriptional-repressor-CzrA	csa3	COG0640_csa3_CAS-I-A	gnl\|CDD\|238042
NZ_CP047794.1\|WP_106459697.1\|2664339_2671773_+\|DUF1542-domain-containing-protein	unknown	unknown	gnl\|CDD\|275089
NZ_CP047794.1\|WP_001292149.1\|2673197_2673632_-\|mannitol-specific-phosphotransferase-enzyme-IIA-component	unknown	unknown	gnl\|CDD\|227014
NZ_CP047794.1\|WP_001123308.1\|2692882_2693296_+\|thiol-disulfide-oxidoreductase-DCC-family-protein	unknown	unknown	gnl\|CDD\|225556
NZ_CP047794.1\|WP_047213685.1\|2685267_2686359_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP047794.1\|WP_000808822.1\|2690147_2690378_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP047794.1\|WP_160199148.1\|2672091_2673198_-\|mannitol-1-phosphate-5-dehydrogenase	unknown	unknown	gnl\|CDD\|235031
NZ_CP047794.1\|WP_000083812.1\|2675810_2677349_-\|PTS-mannitol-transporter-subunit-IICB	unknown	unknown	gnl\|CDD\|225123
NZ_CP047794.1\|WP_047213687.1\|2682822_2683950_+\|SAP-domain-containing-protein	unknown	unknown	gnl\|CDD\|366887
NZ_CP047794.1\|WP_000160304.1\|2694059_2694770_-\|purine-nucleoside-phosphorylase	unknown	unknown	gnl\|CDD\|180275

Protein	Function_ID	Function_description	E-value
NZ_CP047794.1\|WP_000019739.1\|2686624_2687605_-\|CDF-family-zinc-efflux-transporter-CzrB	gnl\|CDD\|224151	COG1230, CzcD, Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism].	8.62765e-109
NZ_CP047794.1\|WP_031927658.1\|2678029_2679835_+\|glutamine--fructose-6-phosphate-transaminase-(isomerizing)	gnl\|CDD\|234729	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase.	0
NZ_CP047794.1\|WP_000160304.1\|2694059_2694770_-\|purine-nucleoside-phosphorylase	gnl\|CDD\|180275	PRK05819, deoD, DeoD-type purine-nucleoside phosphorylase.	2.10672e-157
NZ_CP047794.1\|WP_000070865.1\|2693495_2693939_+\|DNA-starvation/stationary-phase-protection-protein	gnl\|CDD\|223854	COG0783, Dps, DNA-binding ferritin-like protein (oxidative damage protectant) [Inorganic ion transport and metabolism].	5.87929e-68
NZ_CP047794.1\|WP_001024091.1\|2688078_2688744_+\|SDR-family-oxidoreductase	gnl\|CDD\|187554	cd05243, SDR_a5, atypical (a) SDRs, subgroup 5. This subgroup contains atypical SDRs, some of which are identified as putative NAD(P)-dependent epimerases, one as a putative NAD-dependent epimerase/dehydratase. Atypical SDRs are distinct from classical SDRs. Members of this subgroup have a glycine-rich NAD(P)-binding motif that is very similar to the extended SDRs, GXXGXXG, and binds NADP. Generally, this subgroup has poor conservation of the active site tetrad; however, individual sequences do contain matches to the YXXXK active site motif, the upstream Ser, and there is a highly conserved Asp in place of the usual active site Asn throughout the subgroup. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif.	8.86209e-48
NZ_CP047794.1\|WP_000908193.1\|2680066_2680849_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224044	COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism].	1.56485e-106
NZ_CP047794.1\|WP_141226525.1\|2680916_2681774_+\|Cof-type-HAD-IIB-family-hydrolase	gnl\|CDD\|223635	COG0561, Cof, Predicted hydrolases of the HAD superfamily [General function prediction only].	3.96757e-59
NZ_CP047794.1\|WP_000927349.1\|2673643_2675776_-\|BglG-family-transcription-antiterminator	gnl\|CDD\|226234	COG3711, BglG, Transcriptional antiterminator [Transcription].	5.9991e-68
NZ_CP047794.1\|WP_000123394.1\|2691051_2692425_+\|EVE-domain-containing-protein	gnl\|CDD\|376640	pfam01878, EVE, EVE domain. This domain was formerly known as DUF55. Crystal structures have shown that this domain is part of the PUA superfamily. This domain has been named EVE and is thought to be RNA-binding.	3.92966e-06
NZ_CP047794.1\|WP_047213683.1\|2689178_2690117_+\|class-I-mannose-6-phosphate-isomerase	gnl\|CDD\|224399	COG1482, ManA, Phosphomannose isomerase [Carbohydrate transport and metabolism].	1.46752e-128
NZ_CP047794.1\|WP_000003759.1\|2687606_2687927_-\|Zn(II)-responsive-metalloregulatory-transcriptional-repressor-CzrA	gnl\|CDD\|238042	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors. ARSR subfamily of helix-turn-helix bacterial transcription regulatory proteins (winged helix topology). Includes several proteins that appear to dissociate from DNA in the presence of metal ions.	1.8473e-17
NZ_CP047794.1\|WP_106459697.1\|2664339_2671773_+\|DUF1542-domain-containing-protein	gnl\|CDD\|275089	TIGR04263, cell_wall_surface_anchor_family_protein, SasC/Mrp/FmtB intercellular aggregation domain. This domain, about 375 amino acids long on average, occurs only in Staphylococcus and Streptococcus. It occurs as a non-repetitive N-terminal domain of LPXTG-anchored surface proteins, including SasC, Mrp, and FmtB. This region in SasC was shown to be involved in cell aggregation and biofilm formation, which may explain the methicillin resistance seen for Mrp and FmtB.	1.44528e-108
NZ_CP047794.1\|WP_001292149.1\|2673197_2673632_-\|mannitol-specific-phosphotransferase-enzyme-IIA-component	gnl\|CDD\|227014	COG4668, MtlA, Mannitol/fructose-specific phosphotransferase system, IIA domain [Carbohydrate transport and metabolism].	2.08822e-62
NZ_CP047794.1\|WP_001123308.1\|2692882_2693296_+\|thiol-disulfide-oxidoreductase-DCC-family-protein	gnl\|CDD\|225556	COG3011, COG3011, Predicted thiol-disulfide oxidoreductase [General function prediction only].	2.52292e-44
NZ_CP047794.1\|WP_160199148.1\|2672091_2673198_-\|mannitol-1-phosphate-5-dehydrogenase	gnl\|CDD\|235031	PRK02318, PRK02318, mannitol-1-phosphate 5-dehydrogenase; Provisional.	0
NZ_CP047794.1\|WP_000083812.1\|2675810_2677349_-\|PTS-mannitol-transporter-subunit-IICB	gnl\|CDD\|225123	COG2213, MtlA, Phosphotransferase system, mannitol-specific IIBC component [Carbohydrate transport and metabolism].	0
NZ_CP047794.1\|WP_047213687.1\|2682822_2683950_+\|SAP-domain-containing-protein	gnl\|CDD\|366887	pfam02037, SAP, SAP domain. The SAP (after SAF-A/B, Acinus and PIAS) motif is a putative DNA/RNA binding domain found in diverse nuclear and cytoplasmic proteins.	5.97077e-06

>NZ_CP047794.1|WP_001802298.1|2684657_2684762_+|hypothetical-protein
MLLLERTSMSDFEMLMVVLTIIGLVLISTQDHKK
>NZ_CP047794.1|WP_047213687.1|2682822_2683950_+|SAP-domain-containing-protein
MSVNARDLLVLHNNVNRLVGEEIFANKCLANNDVQIMNSIKKLIEAELLTTTNDFEVSIYKKTRPELQSILKSFGIKTTGNKPDLIKRIDDNFHIINNLDLPYVYIPTKKGEEILKKTEYLTSFIYSYKISLERAYYMVENYIDENCDDKVAEIYKFEFQRKYDNGEFDFNHGYNFELNMLIDHYKRDVKDYDNARKYSNFYLYFGLRDFLKKLMSNYSYYDSKGNIDLNEIQNDLNRFINSSASGMYERLIYNENLSNNIMFELFKKDTQDYSDLEEQLIEKFINYVVSYVKKESRSNTLIELSKMLEKGYTIDKEKFKKEDEYLSRYIITDINYLKNLESKIGVAIDSRNGEIHLVLDDDSLDKLIKNQKNRQ
>NZ_CP047794.1|WP_141226525.1|2680916_2681774_+|Cof-type-HAD-IIB-family-hydrolase
MDNVKAIFLDMDGTILHENNQASTYTKDVINRLREKGYKVFLATGRSHSEIHKLVPEDFAVNGIISSNGTIGEVDGEIIFKHGLSLAQVQQIINLAKRQQIYYEVFPFEGNRVSLKEDETWMRDMIRSQDPINGVSHSEWSSRQDALAGKIDWVTKFPEGEYSKIYLFSSNLEKITAFRDELKQNHVQLQISVSNSSRFNAETMAYQTDKGTGIKEMIAHFGIHQEETLVIGDSDNDRAMFEFGHYTVAMKNARPEIQALTSDVTAYTNEEDGAAKYLAKHFLAD
>NZ_CP047794.1|WP_000908193.1|2680066_2680849_+|ABC-transporter-ATP-binding-protein
MLIQLDQVGRMKQGKTILKNISWQINGGDKWILYGLNGAGKTTLLNILNVYEPPTTGDVNLFGKMPGKVGYSAETVRQHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMSAKAQQYIGYLSTGEKQRVMIARALMGQPQVLILDEPAAGLDFIARESLLSILDSLSDSYPTLAMIYVTHFIEEITGNFTKILLLKDGESVQQGLIDDILTSENMSRFFQKNVAVQRWNNRFSMAMLE
>NZ_CP047794.1|WP_031927658.1|2678029_2679835_+|glutamine--fructose-6-phosphate-transaminase-(isomerizing)
MCGIVGYIGYDNAKELLLKGLEKLEYRGYDSAGIAVVNDDNTTVFKEKGRIAELRKVADSSDFDGPVGIGHTRWATHGVPNHENSHPHQSSNGRFTLVHNGVIENYEELKSEYLQGVSFISETDTEVIVQLVEYFSNQGLSTEEAFTKVVSLLHGSYALGLLDAEDKDTIYVAKNKSPLLLGVGEGFNVIASDALAMLQVTSEYKEIHDHEIVIVKKDEVIIKDADGNVVERDSYIAEIDASDAEKGVYAHYMLKEIHEQPAVMRRIIQEYQDAEGNLKIDQDIINDVKEADRIYVIAAGTSYHAGLVGKEFLEKWAGVPTEVHVASEFVYNMPLLSEKPLFVYISQSGETADSRAVLVETNKLGHKSLTITNVAGSTLSREADHTLLLHAGPEIAVASTKAYTAQIAVLSILSQIVAKEHGREADIDLLRELAKVTTAIEAIVDDAPIMEQIATDFLETTRNAFFIGRTIDYNVSLEGALKLKEISYIQAEGFAGGELKHGTIALIEEGTPVVGLATQEKVNLSIRGNVKEVVARGAHPCIISMEGLEKEGDTYVIPHVHELLTPLVSVVALQLISYYAALHRDLDVDKPRNLAKSVTVE
>NZ_CP047794.1|WP_000083812.1|2675810_2677349_-|PTS-mannitol-transporter-subunit-IICB
MSQTEEKKGIGRRVQAFGSFLSSMIMPNIGAFIAWGFIAAIFIDNGWLPNKDLATLAGPMITYLIPLLIAFSGGRLIYDLRGGIIAATATMGVIVALPDTPMLLGAMIMGPLVGWLMKKTDQLIQPRTPQGFEMLFNNFSAGILGFIMTIVGFKVLAPIMKFIMYILSVAVESLVHAHLLPVVSILVEPAKILFLNNAINHGVFTPLGTDQAAKVGQSILYTIESNPGPGLGILLAYMIFGKGTAKATSYGAGIIHFLGGIHEIYFPYVLMRPLLFIAVILGGMTGVATYQATGFGFKTPASPGSFIVYCLNAPRGEFLHMLLGVFLAALVSFVVAALIMKFTREPKQDLEAATAQMENTKGKKSSVASKLVSSDKNVNTEENASGNVSETSSSDDDPEALLDNYNTEDVDAHNYNNINHVIFACDAGMGSSAMGASMLRNKFKKAGINDITVTNTAINQLPKDAQLVITQKKLTDRAIKQTPNAIHISVDNFLNSPRYEELLNNLKKDDQA
>NZ_CP047794.1|WP_000927349.1|2673643_2675776_-|BglG-family-transcription-antiterminator
MLLSTREKEMIALLIKYHGQYITIHDIAQQLAVSSRTIHRELKGVEAYLTSFSLTLERANKKGLRIAGEDSDLNDLKQSIAQHQTIDLSVEEQKVIIIYALIQAKEPVKQYSLAQEIGVSVQTLAKMLDDLELDLNKYQLSLSRKRGEGIYLVGTESKKREFLSQLMVNNLNSTSVYSVIENHFVFHSLNQIHKDFVDLERIFNVERLLMDYLSALPYQLTESSYLTLTVHIVLSISRIKNGEYVALNDDIYDSVQNTFEHKVASELADKLGQIYDVTFNQAEIAFITIHLRGAKRKNLNDTSLNNRCEENKIKAFVKKVEMISGMTFADLDTLVDGLTLHLNPAINRLQANIETYNPLTDMIKFKYPRLFENVRLALNDCWPDLIFPESEIAFIVLHFGGSIKNQGNRFLNILVVCSSGMGTSRLLSTRLEQVFSEIERITQASVSDLKSLDLSQYDGIISTVNLDIDSPYLTVNPLLPDSDISYVAQFLNTKSTFQETHDKSSNMIDKDDVHIETKDIDGNTSFENEQTSNLTSVFEKHLSDEKSEQLMHHMRSGLTLLDSVKIVSTEVKQWQTYIADYLYQCDVINDPTSFAELLEQRLIDNPGWILSPYPVAIPHLRDNMIKHPMILITVLEEPLALPSIQNDNQTIKYMISMFIPDNDFMASLVSDLSEFLSLKLESIDTFMENPQELETLLRNKFLERIKKQFI
>NZ_CP047794.1|WP_001292149.1|2673197_2673632_-|mannitol-specific-phosphotransferase-enzyme-IIA-component
MSELFSNDNIFLNVNVNSQNEAIEKAGKALVDSGAVTDAYIQAMKDREQVVSTFMGNGLAIPHGTDEAKTNVIHSGLTLLQIPEGVDWDGEVVKVVVGIAGKDGEHLDLLSKIAITFSEEENVDRIVQAKSAEEIKQVFEEADA
>NZ_CP047794.1|WP_160199148.1|2672091_2673198_-|mannitol-1-phosphate-5-dehydrogenase
MKAVHFGAGNIGRGFIGYILADNNVKVTFADVNEEIINALAHDHQYDVILADESKTTTRVNNVDAINSMQPSEALKQAILEADIITTAVGVNILPIIAKSFAPFLKEKTNHVNIVACENAIMATDTLKKTVLDITGPLGNNIHFANSAVDRIVPLQKNENILDVMVEPFYEWVVEKDAWYGPELNHIKYVDDLTPYIERKLLTVNTGHAYLAYAGKFADKATVLDAVKDSSIEAGLRRVLAETSQYITNEFDFTEAEQAGYVEKIIDRFNNSYLSDEVTRVGRGTLRKIGPKDRIIKPLTYLYNKDLERTGLLNTAALLLKYDDTADQETVEKNNYIKEHGLKVFLSEYAKVDDGLADEIIEAYNSLS
>NZ_CP047794.1|WP_106459697.1|2664339_2671773_+|DUF1542-domain-containing-protein
MNLFRQQKFSIRKFNVGIFSALIATVTFISTNPTTASAAEQNQPAQNQPAQPADANTQPNANAGAQANPTAQPAAPANQGQPAAQPANQGGQANPAGGAAQPNTQPAGQGNQADPNNAAQAQPGNQAAPANQAGQGNNQATPNNNATPANQTQPANAPAAAQPAANAQTQDPNASNTGEGSINTTLTFDDPAISTDENRQDPTVTVTDKVNGYSLINNGKIGFVNSELRRSDMFDKNNPQNYQARGNVAALGRVNANDSTDHGNFNGISKTVNVKPDSELIINFTTMQTNSKQGATNLVIKDAKKNTELATVNVAKTGTAHLFKVPTDADRLDLQFIPDNTAVADASRITTNKDGYKYYSFIDNVGLFSGSHLYVKNRDLAPKATNNKEFTINTEIGNNGNFGASLKADQFKYEVTLPQGVTYVNDSLTTTFPNGNEDSTVLKNMTVNYDQNANKVTFTSQGVTTARGTHTKEVLFPDKSLKLSYKVNVANIDTPKNIDFNEKLTYRTASDVVINNAQPEVTLTADPFSVAVEMNKDALQQQVNSQVDNSHYTTASIAEYNKLKQQADNILNEDANHVETANRASQAAIDGLVTKLQAALIDNQAAIAELDAKAQEKVTAAQQSKKVTQDEVAALVTKINNDKNNAIAEINKQTTSQGVTTEKDNGIAVLEQDVITPTVKPQAKQDIIQAVTTRKQQIKKSNASLQDEKDVANDKIGKIETKAIKDIDAATTNAQVEAIKTKAINDINQTAPATTAKAAALEEFDEVVQAQIDQASLNPDTTNEEVAEAIERINAAKVSDVKAIEATTTAQDLERVKNEEISKIENITDSTQTKMDAYNDVKQAATARKAQNATVSNATNEEVAEADAAVEAAQKQGLHDIQVVKSKQEVADTKSKVLDKINAIQTQAKVKPAADTEVENAYNTRKQEIQNSNASTTEEKQAAYTELDTKKQEARTNLDAANTNSDVTTAKDNSIAAINQVQAATTKKSDAKAEIAQKASERKTAIEAMNDSTTEEQQAAKDKVDQAVVTANTDIDNAAANTDVDNAKTTNEATIAAITPDANVKPTAKQAIADKVQAQETAIDAYNGATTEEKAAAKQQVQTEKTTADAAIDGAHSNAEVEAAKNAEIAKIEAIQPATTTKDDAKQAITTKANERKAAIAQTQDITAEEIAAANADVDNAVTQANSNIEAANSQNDVDQAKTTGETSIDQVTPTVNKKATARNEITTILNNKLQAIQATPDATDEEKQAADAEANTENGKANQAISAATTNAQVDEAKANAEVAINAVTPKVVKKQAAKDEIDQLQVAQTSVINNDQNATNEEKEAAIQQLATAVTDAKNNITAATDDNGVDQAKDAGKNSIQSTQPATAVKSNAKNEVDQAVTTQNQAIDNTTGATTEEKNAAKDLVLKAKEKAYQDILNAQTTNDVTQIKDQAVADVQGITADTTIKDVAKDELATKANEQKALIAQTADATTEEKEQANQQVDAQLTQGNQNIENAQSIDDVNTAKDNAIQAIDPIQASTDVKTNARAELLTEMQNKITEILSDNTTTNEEKGKDIEPVRATYEEGLNNINTANTTGDVTTAKDTAVQKVQQLHANPVKKPAGKTALDQAAADRKTQIEQTPNASQQEINDAKQEVDATLNQAKTNVDQSSTNEYVDNAVKEGKAKINAVKTFSEYKKDALAKIEAAYNSKVNEADNSNASTSSEIAEAKQKLAELKQTADQNVNQATSKDDIEVQIHNDLDNINDYTIPTGKKETATTDLYAYAGQKKNNISADTNATQDEKQQAIKQVDQNVQTALESINNGVDNGDVDDALTQGKAAIDAIQVDATVKPKANQAIEAKAEDTKESIDHSDQLTAEEKTEALAMIKQITDQAKKGINDATTTAEVEKAKAQGLEAFDNIQIDSTEKQKAIEELETALDQIEAGVNVDADATTEEKEAFTNALEDILSKATEDISDQTTNAEIATVKNSALEQLKAQRINPEVKKNALEAIREVVNKQIEIIKNADASAKEIARTDLGRYFDRFADNLDKTQTNAEVAELQNVTIPAIEAIVPQNDPDANDTNNGTDNNDATANSNANATPENTGQPNVSETTDNGKADASPTTPNNSDAATGETTATSTNNPSTDDANNKPTANNNSSVDASTDNSATGNGTIDKPEVESTNNGTTDKPATETDNVTPAESTTNNNSTTATNENAPTGSTATAPTTASTEAASSADSKDNAFVNDSKQNAEVNNSAESQSTNGMVVQPKSENKAKAEKDGRDSTNQSMVESTTETLPSADITEPKVPSNTSKDKEESTTNQTDAGHLKSETNVASNEVDKSEGNVDTDVSNKPSTSKPSEAKDKATSTEDSQKADMATADTKDNQAAIGATADVNNKATQNDGANASPATVSNGSNSTNQDMLNVTKTEENKANVKSAQQGKVNKPKQQAKTLPDTGMSHNDDLPYAELALGAGMAFLIRRFTKKDQQTEE
>NZ_CP047794.1|WP_047213685.1|2685267_2686359_-|hypothetical-protein
MFTYFKSALKNAKPQLLITLIYALIAFAVIAVVYLLANFQLAKYVQNIVIYSQFGQKPPGDVYLKVIAVLLIAAIVSLFVLVQIFIGITNVMKRAMSHEKVKFTDLFIAFKKGIYLKSVLIGLVSIAMIIVLSLLTSLLYKLFSPVSEMIMNSVQSSYADSTHLIGIAITTQSIIIIVVLLIKAIITWLLLIPIFNFMTSFVESTNDKVKTHLANGFKAMKNGQKTFFKFFIGILLLNLIIILFKTPVGYLISFNTQSLSQSVAENIIRVYTVMTIILFVVIHAIILMGIVQYYLKRGQKITKDKVKTADKDNKVVTEPKNTKVETDKVTTSVETKTEKAQDSLNDNTTKTMTSDKPEDNQPK
>NZ_CP047794.1|WP_000019739.1|2686624_2687605_-|CDF-family-zinc-efflux-transporter-CzrB
MSHSHHHHDHMHSHVTTNNKKVLFISFLIIGLYMFIEIIGGLLANSLALLSDGIHMFSDTFSLGVALIAFIYAEKNATATKTFGYKRFEVLAALFNGVTLFVISILIVFEAIKRFFVPSEVQSKEMLIISIIGLIVNIVVAFFMFKGGDTSHNLNMRGAFLHVIGDLLGSVGAITAAILIWAFGWTIADPIASILVSVIILKSAWGITKSSINILMEGTPSDVDIDEVITTIKKDSRIQSVHDCHVWTISNDMNALSCHVVVDHTLTMKECELLLENIEHDLLHLNIHHMTIQLETPNHKHDESIICSGTHSHSHNHHAHHHAHVH
>NZ_CP047794.1|WP_000003759.1|2687606_2687927_-|Zn(II)-responsive-metalloregulatory-transcriptional-repressor-CzrA
MSEQYSEINTDTLERVTEIFKALGDYNRIRIMELLSVSEASVGHISHQLNLSQSNVSHQLKLLKSVHLVKAKRQGQSMIYSLDDIHVATMLKQAIHHANHPKESGL
>NZ_CP047794.1|WP_001024091.1|2688078_2688744_+|SDR-family-oxidoreductase
MNILVIGANGGVGSLLVQQLAKENVPFTAGVRQSDQLNALKSQGMKAILVDVENDSIETLTETFKPFDKVIFSVGSGGNTGADKTIIVDLDGAVKSIIASKEANIKHYVMVSTYDSRRQAFDDSGDLKPYTIAKHYADDYLRRSGLNYTILHPGALTNAAGSGKIEAAQYFEGKGEIPREDVATVLKEIVTSNHFNHQEFQVISGEQDIKDALTQFENETD
>NZ_CP047794.1|WP_047213683.1|2689178_2690117_+|class-I-mannose-6-phosphate-isomerase
MPLFLQPILKTKLWGGQRLSEFGYQLDNDTTGECWCVSAHPNGKSEIINGPYQGQTLDRIWSEHRELFGDFPSKDFPLLTKIVDARESLSIHVHPDNSYAYEHENGQYGKSECWYIIDAEEDAEIVIGTLAESREEVANHVQRGTIESILRYIKVKPGEFYFIPAGTVHTISSGILAYETMQSSDITYRLYDFNRQDNQYNDRPLNIEKALDVIQYNAPLPNILPESEIIENHKCTHIVSNDFFTLVKWEISGTLNYMKPREFCLVTVLEGEGQMIVDGEIFKLTTGTNFILTSEDLDSVFEGDFTLMISYA
>NZ_CP047794.1|WP_000808822.1|2690147_2690378_+|hypothetical-protein
MKQFLYIALVCSVIAGLGAFLHIPQYPSMTIPRIVAILGIISAMLTFKDKQISASLKFSALLINVLPLCGTFVASN
>NZ_CP047794.1|WP_000123394.1|2691051_2692425_+|EVE-domain-containing-protein
MTAETNYFWLNCGYNRWNHNEPLVGQTALFESGAHFNPSQGFRAFKKAKVGDQVIFYQVQTDTGLLGCGEIISVETGAQNKIRVQFRFNEQLKPLTADYLKRSEALEFRMSNMKETLFNQINAEEFDLISGLGKGEIKIPRYFFLAETEEFEPGNQYTIYTHTYNGIKRNGYHFYTQLEEGDNIIFYNRTKNQSVVGIGEVSKHIHEKPPIPGRTNSTVIEVSYEKDITPITLSTLNKHPKLKNLYFLQENAKQAIASMSQAQYDAIIEMSDNNGLKSPFEMVQKPDMLESEKEEALKPFILLVVDRKEEGLKAANDLLQKANANPVITTGHPDFSEDMLYGKYLPNETGALYYREGFITQLMPKKDKSYLVIDNFNRIDTDIFQTYINVLEGYEVTLPRYNKDGNMIKWSRQKDSFYYFNPNWHIVGITYDSLEEIKEKYSEQFLKYTRIVKVKHD
>NZ_CP047794.1|WP_001123308.1|2692882_2693296_+|thiol-disulfide-oxidoreductase-DCC-family-protein
MPIVYYDGNCIYCYNYVIWLIQHDLPRNYQFATLKGEVGQQFFKQHPEAANKNSVILQKGDRIYFESQAIIQLITSLPNRTKLLGIGLWLVPKPVRNFGYRMFANNRNRMWKTTWHQPNDYEKSFFLDDNAKVKLTD
>NZ_CP047794.1|WP_000070865.1|2693495_2693939_+|DNA-starvation/stationary-phase-protection-protein
MSNQQDVVKELNQQVANWTVAYTKLHNFHWYVKGPNFFSLHVKFEELYNEASQYVDELAERILAVGGNPVGTLTECLEQSIVKEAAKGYSAEQMVEELSQDFTNISKQLEKAIEIAGNAGDDVSEDMFIGMQTSVDKHNWMFKSYLS
>NZ_CP047794.1|WP_000160304.1|2694059_2694770_-|purine-nucleoside-phosphorylase
MTKGTPHIQPNGVKIAKTVLMPGDPLRAKYIADNFLENVEQFNDVRNMFGYTGTYKGKEVSVMGSGMGIPSIGIYSYELYNFFDVDTIIRIGSCGALQENVNLYDVIIAQAASTNSNYVDQYNIPGHFAPIADFELVTKAKNVADQIGATTHVGNVLSSDTFYNADPTFNDAWKKMGILGIEMESAGLYLNAIHAGKKALGIFTVSDHILRDEATTPEERQNSFTQMMEIALEIAE

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Crispr_ID: NZ_CP047794_12

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP047794_12

2788384-2788538

Orphan

Consensus_repeat	Method
TCTATGTTGGGGCCCCACCCCAACTTGCACATTATTGTAAGCT	PILER-CR

2 spacers

The CRISPR arrays of NZ_CP047794_12

>merge|NZ_CP047794|12|2788384-2788538|PILER-CR
TATGTTGGGGCCCCGCCCCAACTTCCATTGTCTGTAGAAATTGGTGTTCCAATTTCTCTATGTTGGGGCCCCACCCCAACTTGCACATTATTGTAAGCTGACTTTCGGCCAGCTTCTATGTTGGGGCCCCGCCAACTTGCACATTATTGTAAGCT

>NZ_CP047794|12|1|2788384-2788538|PILER-CR
TATGTTGGGGCCCCGCCCCAACTTCCATTGTCTGTAGAAATTG	GTGTTCCAATTTCTCTATGTTGGGGCCCCACC
CCAACTTGCACATTATTGTAAGCTGACTTTCGGCCAGCTTCTA	TGTTGGGGCCCCGCC
AACTTGCACATTATTGTAAGCT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP047794.1\|WP_014532666.1\|2785712_2786147_+\|tRNA-(adenosine(37)-N6)-threonylcarbamoyltransferase-complex-ATPase-subunit-type-1-TsaE	unknown	unknown	gnl\|CDD\|223873
NZ_CP047794.1\|WP_001791590.1\|2790373_2790502_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP047794.1\|WP_000047831.1\|2781689_2783459_-\|biosynthetic-type-acetolactate-synthase-large-subunit	unknown	unknown	gnl\|CDD\|236076
NZ_CP047794.1\|WP_160199153.1\|2795342_2796593_+\|ammonium-transporter	unknown	unknown	gnl\|CDD\|223083
NZ_CP047794.1\|WP_000372755.1\|2786762_2787227_+\|ribosomal-protein-S18-alanine-N-acetyltransferase	unknown	unknown	gnl\|CDD\|273701
NZ_CP047794.1\|WP_072399972.1\|2780294_2781314_-\|ketol-acid-reductoisomerase	unknown	unknown	gnl\|CDD\|235491
NZ_CP047794.1\|WP_160199152.1\|2778735_2780265_-\|2-isopropylmalate-synthase	unknown	unknown	gnl\|CDD\|234864
NZ_CP047794.1\|WP_001086751.1\|2786127_2786790_+\|tRNA-(adenosine(37)-N6)-threonylcarbamoyltransferase-complex-dimerization-subunit-type-1-TsaB	unknown	unknown	gnl\|CDD\|274750
NZ_CP047794.1\|WP_047213656.1\|2799353_2800313_+\|carbohydrate-kinase	unknown	unknown	gnl\|CDD\|238572
NZ_CP047794.1\|WP_001255780.1\|2783486_2785175_-\|dihydroxy-acid-dehydratase	unknown	unknown	gnl\|CDD\|234861
NZ_CP047794.1\|WP_000581074.1\|2794908_2795133_+\|sulfurtransferase-TusA-family-protein	unknown	unknown	gnl\|CDD\|223502
NZ_CP047794.1\|WP_000159047.1\|2787219_2788245_+\|tRNA-(adenosine(37)-N6)-threonylcarbamoyltransferase-complex-transferase-subunit-TsaD	unknown	unknown	gnl\|CDD\|236585
NZ_CP047794.1\|WP_072358016.1\|2793820_2794849_+\|YeeE/YedE-family-protein	unknown	unknown	gnl\|CDD\|377230
NZ_CP047794.1\|WP_000602075.1\|2790646_2792575_-\|ABC-F-family-ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|223562
NZ_CP047794.1\|WP_001283612.1\|2792827_2793463_+\|redox-sensing-transcriptional-repressor-Rex	unknown	unknown	gnl\|CDD\|225221
NZ_CP047794.1\|WP_001791591.1\|2785492_2785648_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP047794.1\|WP_000106319.1\|2788674_2790285_-\|MutS-family-DNA-mismatch-repair-protein	unknown	unknown	gnl\|CDD\|223327
NZ_CP047794.1\|WP_000196910.1\|2781435_2781690_-\|ACT-domain-containing-protein	unknown	unknown	gnl\|CDD\|184144
NZ_CP047794.1\|WP_000141423.1\|2797872_2799357_+\|sucrose-6-phosphate-hydrolase	unknown	unknown	gnl\|CDD\|273554
NZ_CP047794.1\|WP_000790321.1\|2796773_2797724_+\|LacI-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|380484

Protein	Function_ID	Function_description	E-value
NZ_CP047794.1\|WP_014532666.1\|2785712_2786147_+\|tRNA-(adenosine(37)-N6)-threonylcarbamoyltransferase-complex-ATPase-subunit-type-1-TsaE	gnl\|CDD\|223873	COG0802, COG0802, Predicted ATPase or kinase [General function prediction only].	2.04507e-59
NZ_CP047794.1\|WP_000047831.1\|2781689_2783459_-\|biosynthetic-type-acetolactate-synthase-large-subunit	gnl\|CDD\|236076	PRK07710, PRK07710, acetolactate synthase large subunit.	0
NZ_CP047794.1\|WP_160199153.1\|2795342_2796593_+\|ammonium-transporter	gnl\|CDD\|223083	COG0004, AmtB, Ammonia permease [Inorganic ion transport and metabolism].	2.91498e-165
NZ_CP047794.1\|WP_000372755.1\|2786762_2787227_+\|ribosomal-protein-S18-alanine-N-acetyltransferase	gnl\|CDD\|273701	TIGR01575, rimI, ribosomal-protein-alanine acetyltransferase. Members of this model belong to the GCN5-related N-acetyltransferase (GNAT) superfamily. This model covers prokarotes and the archaea. The seed contains a characterized accession for Gram negative E. coli. An untraceable characterized accession (PIR\|S66013) for Gram positive B. subtilis scores well (205.0) in the full alignment. Characterized members are lacking in the archaea. Noise cutoff (72.4) was set to exclude M. loti paralog of rimI. Trusted cutoff (80.0) was set at next highest scoring member in the mini-database. [Protein synthesis, Ribosomal proteins: synthesis and modification].	1.81907e-31
NZ_CP047794.1\|WP_072399972.1\|2780294_2781314_-\|ketol-acid-reductoisomerase	gnl\|CDD\|235491	PRK05479, PRK05479, ketol-acid reductoisomerase; Provisional.	0
NZ_CP047794.1\|WP_160199152.1\|2778735_2780265_-\|2-isopropylmalate-synthase	gnl\|CDD\|234864	PRK00915, PRK00915, 2-isopropylmalate synthase; Validated.	0
NZ_CP047794.1\|WP_001086751.1\|2786127_2786790_+\|tRNA-(adenosine(37)-N6)-threonylcarbamoyltransferase-complex-dimerization-subunit-type-1-TsaB	gnl\|CDD\|274750	TIGR03725, T6A_YeaZ, tRNA threonylcarbamoyl adenosine modification protein YeaZ. This family describes a protein family, YeaZ, now associated with the threonylcarbamoyl adenosine (t6A) tRNA modification. Members of this family may occur as fusions with ygjD (previously gcp) or the ribosomal protein N-acetyltransferase rimI, and is frequently encoded next to rimI. [Protein synthesis, tRNA and rRNA base modification].	1.41038e-65
NZ_CP047794.1\|WP_001255780.1\|2783486_2785175_-\|dihydroxy-acid-dehydratase	gnl\|CDD\|234861	PRK00911, PRK00911, dihydroxy-acid dehydratase; Provisional.	0
NZ_CP047794.1\|WP_000581074.1\|2794908_2795133_+\|sulfurtransferase-TusA-family-protein	gnl\|CDD\|223502	COG0425, SirA, Predicted redox protein, regulator of disulfide bond formation [Posttranslational modification, protein turnover, chaperones].	2.80402e-20
NZ_CP047794.1\|WP_000159047.1\|2787219_2788245_+\|tRNA-(adenosine(37)-N6)-threonylcarbamoyltransferase-complex-transferase-subunit-TsaD	gnl\|CDD\|236585	PRK09604, PRK09604, tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD.	0
NZ_CP047794.1\|WP_072358016.1\|2793820_2794849_+\|YeeE/YedE-family-protein	gnl\|CDD\|377230	pfam04143, Sulf_transp, Sulphur transport. This is an integral membrane protein. It is predicted to have a function in the transport of sulphur-containing molecules. It contains several conserved glycines and an invariant cysteine that is probably an important functional residue.	1.34981e-115
NZ_CP047794.1\|WP_000602075.1\|2790646_2792575_-\|ABC-F-family-ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|223562	COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only].	0
NZ_CP047794.1\|WP_001283612.1\|2792827_2793463_+\|redox-sensing-transcriptional-repressor-Rex	gnl\|CDD\|225221	COG2344, COG2344, AT-rich DNA-binding protein [General function prediction only].	2.11486e-113
NZ_CP047794.1\|WP_047213656.1\|2799353_2800313_+\|carbohydrate-kinase	gnl\|CDD\|238572	cd01167, bac_FRK, Fructokinases (FRKs) mainly from bacteria and plants are enzymes with high specificity for fructose, as are all FRKs, but they catalyzes the conversion of fructose to fructose-6-phosphate, which is an entry point into glycolysis via conversion into glucose-6-phosphate. This is in contrast to FRKs [or ketohexokinases (KHKs)] from mammalia and halophilic archaebacteria, which phosphorylate fructose to fructose-1-phosphate.	8.24308e-117
NZ_CP047794.1\|WP_000106319.1\|2788674_2790285_-\|MutS-family-DNA-mismatch-repair-protein	gnl\|CDD\|223327	COG0249, MutS, Mismatch repair ATPase (MutS family) [DNA replication, recombination, and repair].	2.51659e-124
NZ_CP047794.1\|WP_000196910.1\|2781435_2781690_-\|ACT-domain-containing-protein	gnl\|CDD\|184144	PRK13562, PRK13562, ACT domain-containing protein.	8.054e-30
NZ_CP047794.1\|WP_000141423.1\|2797872_2799357_+\|sucrose-6-phosphate-hydrolase	gnl\|CDD\|273554	TIGR01322, Sucrose-6-phosphate_hydrolase, sucrose-6-phosphate hydrolase. [Energy metabolism, Biosynthesis and degradation of polysaccharides].	0
NZ_CP047794.1\|WP_000790321.1\|2796773_2797724_+\|LacI-family-transcriptional-regulator	gnl\|CDD\|380484	cd01542, PBP1_TreR-like, ligand-binding domain of DNA transcription repressor specific for trehalose (TreR) which is a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor specific for trehalose (TreR) which is a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of TreR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type 1 periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type 1 periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.	5.07107e-85

>NZ_CP047794.1|WP_000159047.1|2787219_2788245_+|tRNA-(adenosine(37)-N6)-threonylcarbamoyltransferase-complex-transferase-subunit-TsaD
MTKDILILAVETSCDETSVSVIKNGRDILSNTVLSQIESHKRFGGVVPEVASRHHVEGITTTINEALVDADVSMEDIDAIAVTEGPGLIGALLIGVNAAKALAFAYDKPLIPVHHIAGHIYANHIEEPLTFPLIALIVSGGHTELVYMKDHLTFEVIGETRDDAVGEAYDKVARTIGLNYPGGPQVDRLAAEGEDTYSFPRVWLDKDSYDFSFSGLKSAVINQLHNQRQKNIPIIEANVATSFQNSVVEVLTFKAIQACKEYGVQRLIVAGGVASNKGLRQSLADQCKVNDIQLTIPSPKLCTDNAAMIGVAGHYLYQQGRFADLALNGHSNIDLEEYSAE
>NZ_CP047794.1|WP_000372755.1|2786762_2787227_+|ribosomal-protein-S18-alanine-N-acetyltransferase
MDQQSKEQLNIREMTKEDVPQVFDIERRSFNDSSWTIDAFYHEIEQNNFAKYFVLEFEQQIIGYLGLWIVIDQAQITTVAIDDNYRGYGLGQMLLKYGINYASHTCDVMSLEVRVNNKVAQHVYENLGFQYGGKRKNYYGEGEDAMVMWVNLND
>NZ_CP047794.1|WP_001086751.1|2786127_2786790_+|tRNA-(adenosine(37)-N6)-threonylcarbamoyltransferase-complex-dimerization-subunit-type-1-TsaB
MNSLLIDTSNQPLSVALMQNDEVLAEITTDSKQNHSVQLMPAISQLFEQSKITKQQLDAIIVAEGPGSYTGLRIGVTVAKTLAYALDVKLYGVSSLKALAATIDHTDKLLVPVFDARRQAVYTGIFQWQNGQLVTILEDQYMSIEALRAFLEDLNQPFIYIGKDTVKLQDELQGDVIAQLPNASVMYQLIDKPSDVHTFTPKYHKLAEAERNWINSQKNN
>NZ_CP047794.1|WP_014532666.1|2785712_2786147_+|tRNA-(adenosine(37)-N6)-threonylcarbamoyltransferase-complex-ATPase-subunit-type-1-TsaE
MNQFAMFLVEQLKSGDLILLNGDLGAGKTTLTQFIGKALGVRRTINSPTFNIIKSYRGKNLKLHHMDCYRLEDSDEDLGFDEFFEDQAITVIEWSQFIKDLLPATHLSINISTISENTRQIELFAQGEHYEQIKEAIIHEFAAH
>NZ_CP047794.1|WP_001791591.1|2785492_2785648_-|hypothetical-protein
MIIHCSIVSNFIFNLYIVTNFNLNFLSLKQIISSKLIVRKFKIFVDILKQI
>NZ_CP047794.1|WP_001255780.1|2783486_2785175_-|dihydroxy-acid-dehydratase
MRSDMIKKGDHQAPARSLLHATGALKSPTDMNKPFVAICNSYIDIVPGHVHLRELADIAKEAIREAGAIPFEFNTIGVDDGIAMGHIGMRYSLPSREIIADAAETVINAHWFDGVFYIPNCDKITPGMILAAMRTNVPAIFCSGGPMKAGLSAHGKALTLSSMFEAVGAFKEGSISKEEFLDMEQNACPTCGSCAGMFTANSMNCLMEVLGLALPYNGTALAVSDQRREMIRQAAFKLVENIKNDLKPRDIVTREAIDDAFALDMAMGGSTNTVLHTLAIANEAGIDYDLERINAIAKRTPYLSKIAPSSSYSMHDVHEAGGVPAIINELMKKDGTLHPDRITVTGKTLRENNEGKEIKNFDVIHPLDAPYDAQGGLSILFGNIAPKGAVIKVGGVDPSIKTFTGKAICFNSHDEAVEAIDNRTVRAGHVVVIRYEGPKGGPGMPEMLAPTSSIVGRGLGKDVALITDGRFSGATRGIAVGHISPEAASGGPIALIEDGDEITIDLTNRTLNVNQPEDVLARRRESLTPFKAKVKTGYLARYTALVTSANTGGVMQVPENLI
>NZ_CP047794.1|WP_000047831.1|2781689_2783459_-|biosynthetic-type-acetolactate-synthase-large-subunit
MSKTQHEVNQNIDPLKMAESLEPEQLNEKTLNDMRSGSEVLVEALLKENVDYLFGYPGGAVLPLYDTFYDGKIKHILVRHEQGAVHAAEGYARVSGKTGVVVVTSGPGATNVMTGITDAHCDSLPLVVFTGQVATPGIGKDAFQEADILSMTSPITKQNYQVKRVEDIPKIVHEAFHVANSGRKGPVVIDFPKDMGVLATNVDLCDEINIPGYEVVTEPENKDIDTFISLLKEAKKPVVLAGAGINQSKSNQLLTQFVNKHQIPTVTTLLGLGAVPYEDTLFLGMGGMHGSYASNMALTECDLLINLGSRFDDRLASKPDAFAPNAKIVHVDIDPSEINKVIHVDLGIIADCKRFLECLNDKNVETVEHSDWVKHCQNNKQKHPFKLGEEDQVFCKPQQTIEYIGKITNGEAIVTTDVGQHQMWAAQFYPFKNHGQWVTSGGLGTMGFGIPSSIGAKLADPDKTVVCFVGDGGFQMTNQEMALLPEYGLDVKIVLINNGTLGMVKQWQDKFFNQRFSHSVFNGQPDFMKMAEAYGVKGFLIDKPEQLEEQLDAAFAYQGPALIEVRISPTEAVNPMVPSGKSNHEMEGL
>NZ_CP047794.1|WP_000196910.1|2781435_2781690_-|ACT-domain-containing-protein
MTRILKLQVADQVSTLNRITSAFVRLQYNIDTLHVTHSEQPGISNMEIQVDIQDDTSLHILIKKLKQQINVLTIECYDLVDNEA
>NZ_CP047794.1|WP_072399972.1|2780294_2781314_-|ketol-acid-reductoisomerase
MEEFIMTTVYYDQDVKTDALQGKKIAVVGYGSQGHAHAQNLKDNGYDVVIGIRPGRSFDKAKEDGFDVFPVAEAVKQADVIMVLLPDEIQGDVYKNEIEPNLEKHNALAFAHGFNIHFGVIQPPADVDVFLVAPKGPGHLVRRTFVEGSAVPSLFGIQQDASGQARNIALSYAKGIGATRAGVIETTFKEETETDLFGEQAVLCGGVSKLIQSGFETLVEAGYQPELAYFEVLHEMKLIVDLMYEGGMENVRYSISNTAEFGDYVSGPRVITPDVKENMKAVLTDIQNGNFSNRFIEDNKNGFKEFYKLREEQHGHQIEKVGRELREMMPFIKSKSIEK
>NZ_CP047794.1|WP_160199152.1|2778735_2780265_-|2-isopropylmalate-synthase
MSSHIQIFDTTLRDGEQTPGVNFTFDERLRIALQLEKWGVDVIEAGFPASSTGSFKSVQAIAQTLTTTAVCGLARCKKSDIDAVYEATKDAAKPVVHVFIATSPIHLEHKLKMSQEDVLASIKEHVTYAKQLFDVVQFSPEDATRTELPFLVKCVQTAVDAGATVINIPDTVGYSYHDEYAHIFKTLTESVTSSNEIIYSAHCHDDLGMAVSNSLAAIEGGARRIEGTVNGIGERAGNAALEEVALALYVRNDHYGAQTALNLEETKKTSDLISRYADIRVPRNKAIVGQNAFSHESGIHQDGVLKHRETYEIMTPQLVGVSTTELPLGKLSGKHAFSEKLKALGYDIDKEAQIDLFKQFKAIADKKKSVSDRDIHAIIQGSEHEHQALYKLETLQLQYVSSGLQSAVVVVKDKEGHIYQDSSIGTGSIVAIYNAVDRIFQKETELIDYRINSVTEGTDAQAEVHVNLLIEGKTVNGFGIDHDILQASCKAYVEAHAKFAAENVEKVGN
>NZ_CP047794.1|WP_000106319.1|2788674_2790285_-|MutS-family-DNA-mismatch-repair-protein
MSTNQTFLIFVIAIILLTSVIGIVGRYMSRQRLFKSMETLWQTISPLESFIRPNSHFDYEYKLYKDKFESHSLVDDKTWSDLNMNAIFHKMNYNLTAIGEMKLYACLRGMLSISNKSLLSLFNDNAEFRKNVTYHLALIGKTVYPTFPDQITPVKRQNILFLCPFLPVISFAVIFINSQVGILLFLMSCLFNIILSATLKRTYEDDLKSIFYASNVLKQGYTISKIKHAPQPEVNFKQFRTARHLTSVLAEVNDEDIGAMVIKLVKLIFMLDYVLFHSIQKSYTTHMNELKNCFDYIAELDNHYALAMYRRTLEYFTEPQIDDSNDGIVFSELTHPLIADAVANDFSLSQNILLTGSNASGKSTFMKSIAINIILASAIQTVTASKFVYQPGIVFTSMANADDVLSGDSYFMAELKSIKRIVEIPDNQKIYCFIDEIFKGTNTTERIAASESVLSFLHEKSNFRVIAATHDIELAELLKQRYENYHFNEVIENNNIHFDYKIKPGKANTRNAIELLKITSFPAKIYERAKDNVSNG
>NZ_CP047794.1|WP_001791590.1|2790373_2790502_+|hypothetical-protein
MIKTMSIENMRTYQQRVYNLWIKGVDNVIYCGYQVGKQKIND
>NZ_CP047794.1|WP_000602075.1|2790646_2792575_-|ABC-F-family-ATP-binding-cassette-domain-containing-protein
MILLQLNHISKSFDGEDIFTDVDFEVKTGERIGIVGRNGAGKSTLMKIIAGVENYDSGNVSKIKNLKLGYLTQQMTLNSNATVFEEMSKPFEHIKRMESLIKEETDWLSKHANDYDSDTYRTHMSRYESLSNQFEQLEGYQYESKIKTVLHGLNFSEEDFNKPINDFSGGQKTRLSLAQILLNEPDLLLLDEPTNHLDLETTKWLEDYLRYFKGAIVIISHDRYFLDKIVTQIYDVALGDVKRYVGNYEEFIQQRDLYYQKRMQEYESQQAEIKRLETFVEKNITRASTSGMAKSRRKILEKMERIDKPMLDAKSANIQFGFDRNTGNDVMHVKNLEIGYQTAITKPISIEVSKGDHIAIIGPNGIGKSTLIKTIAKQQKALNGDITFGANLQIGYYDQKQAEFKSSKTILDYVWDQYPLMNEKDIRAVLGRFLFVQDDVKKIINDLSGGEKARLQLALLMLQRDNVLILDEPTNHLDIDSKEMLEQALQHFEGTILFVSHDRYFINQLANKVFDLTIDGGKMYLGDYQYYIEKVEEAEALKAHQEEQSVNVQAHEKSMEQSSYHNQKEQRREQRKLERQISECENEIETLETTILQIDEQLTQPEVYNNPQKANELAIQKQDSEQKLEHAMSKWEELQQKL
>NZ_CP047794.1|WP_001283612.1|2792827_2793463_+|redox-sensing-transcriptional-repressor-Rex
MSDQVKIPRATLKRLPLYYRFVSSLKSKGIDRVNSKAISDALQIDSATIRRDFSYFGELGKKGYGYNIDSLLDFFKSELSESDMIKIAIVGVGNLGKALLTYNFSIHDDMTITEAFDVKEDVIGQKIGNVIVKDNDELITTLKKEEIDVVILTTPERVAQKVADELVQAGVKGILNFTPGRINTPSDVQVHQIDLGIELQSLLFFMKNYSE
>NZ_CP047794.1|WP_072358016.1|2793820_2794849_+|YeeE/YedE-family-protein
MQRTRFCLTGGFRDMYVQKNNKMFYALLIAITIQSIGLLILTATGILQIPAHSFPILGTVIGSFIFGIGIVLAGGCATGTWYRAGEGLIGSWIALVLYAVTAAITKTGILKPVMDKINQPTNINSDMSQTTGIPFWGLVVILTIITIFLVVRTLNNKKVRVAVPKLKQRYTGIRYYLFEKRYHPFIAAIAIGLIALLAWPMSASTGRNDGLGITTPSANLVHFLITGETKFIDWGVFLVLGIFIGSYIAARGSREFKWRLPDKITIRNSAIGGICMGFGASVAGGCSIGNGLVETATMTWQGWIALASMIVGVWTMSHFIFVRPMKKVQQQSAKVQQQTQIV
>NZ_CP047794.1|WP_000581074.1|2794908_2795133_+|sulfurtransferase-TusA-family-protein
MIHELGTVGMVCPFPLIEAQKKMATLKSGDELKIDFDCTQATEAIPNWAAENGYPVTNYEQIDNASWTITIQKV
>NZ_CP047794.1|WP_160199153.1|2795342_2796593_+|ammonium-transporter
MNLNDTIFMFLCTLLVWLMTPGLSLFYGGLVQSENALNTVMQSMAAIVLVTFVWITVGFTISFGNGNLWFGNWEYTFLNHVGFATQEDISPHIPFALFMLFQMMFCTIAISILSGSIAEKMKFIPYLLFVVIWTALVYSPVAHWVWGGGWINKLGVLDFAGGTVVHITSGVSGLVLAIMIGKGNKHSESTPHNLIITLIGGIFVWIGWYGFNVGSAFTFDNIAMLAFTNTVISASAGAIGWLILEYIFKKTTSLLGLLLGALAGLVVITPAAGYVTYLSATIMAMIGGICCYIVINYIKVKLKYHDALDAFGIHGVGGIIGAVLTAFFQSKKANPDIENGFIYTGDIHIILVQILCVTAVVIFSIVMTFIIAKVIKLITPLSVTEQETNIGLDKIVHGEHAYFEGELNRFNKHIRY
>NZ_CP047794.1|WP_000790321.1|2796773_2797724_+|LacI-family-transcriptional-regulator
MKNISDIAKLAGVSKSTVSRFLNNGSVSKKTSEKLTKIIAEHDYQPNQFAQSLRARQTHLIGAIIPRMNSYAVDETIKGLAKQCQKYESQLILNYTGLNIEAEIQALETLARSKVDGIVLMATDITERHIEVINKMNVPIVIVGQQHEQLHSIVHDDYKAGQIIGEWIGQQGYQQIEVFSVSEKDIAVGIHRKRGLLDQLAKYQIKPNIHETNFTYVEAQKDVANVLENVEQVDAVVGATDTIALAAYKYYSDKKDVMKPHQIYGFGGDPMTQLVSPSIKTIHYNYFEAGQCAMEEIQQMLKKQDMPYSVTVDVNI
>NZ_CP047794.1|WP_000141423.1|2797872_2799357_+|sucrose-6-phosphate-hydrolase
MTEWTREERYQRIEDVDTEYFKTLKQQVDQSKFRQQFHIQPETGLLNDPNGLIFYKGKYYVSHQWFPLGAVHGLKYWYNYTSDDLINFKAEGPILNPDTKYDSHGVYSGSAFEYNGHLYYMYTGNHRDNHWQRHASQMIARLKEDGSVEKFPKPVISQQPEGYTSHFRDPKVFKYGEKYYAIIGAQNNDQQGRLLLYNTEDIINWHYLGEINTELDDFGYMWECPDYFNVDNQDVILICPQGIKPKGDQFKNIYQSGYILGKFDIEKLTYEHENFVELDNGFDFYAPQTFLDEKGRRVLIGWMGLPEIEYPTDNEGWAHCLTIPRVLNVENGQLKQRPYPALEKLRHNKETALGYANKFTRKLHPYEGKQYELIIDILDNDATEVYFELRTSKTSSTLIAYNKRENKITLDRSDSGLLPTNVEGTMRSTILDTPLKQLQIFVDTSSIEIFCNDGERVLTSRIFPTEDALGIKTSTESGQVYLQFTKYDLKDEHK
>NZ_CP047794.1|WP_047213656.1|2799353_2800313_+|carbohydrate-kinase
MRRLFSIGEALIDFIPNITNANLKDVQTFTKQIGGAPCNVACTVQKLGQQAYMITQLGNDAFGDSIIETISSIGVDVSKVYRTNEANTALAFVSLTEAGERDFSFYRKPSADMLFEPSFVNDIDVNENDVVHFCSVDLVDSPMRDAHYQLITKTLNANGTVVFDPNVRLPLWDNAEDLRQTIHTFLPLAHIVKVSDEELEFITGIHDENEAIQSLFTGNVTVVIYTKGADGAAVYLKNGINHYHSGYKVKPVDTTGAGDAFIGAVISRILATDVLNLTQLFENEGEEILAFSNRVAAIVTTKYGAINSLPTLQEAEQAF

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Crispr_ID: NZ_CP047794_13

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP047794_13

2813838-2813917

Orphan

Consensus_repeat	Method
ACAATGCAAGTTGGGGTGGGGCC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP047794_13

>merge|NZ_CP047794|13|2813838-2813917|CRISPRCasFinder
ACAATGCAAGTTGGGGTGGGGCCCCAACACAGAGAATTTCGAAAAGAAATTCTACAAACAATGTAAGTTGGGGTGGGGCC

>NZ_CP047794|13|12|2813838-2813917|CRISPRCasFinder
ACAATGCAAGTTGGGGTGGGGCC	CCAACACAGAGAATTTCGAAAAGAAATTCTACAA
ACAATGTAAGTTGGGGTGGGGCC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP047794.1\|WP_000240648.1\|2808855_2810472_+\|chaperonin-GroEL	unknown	unknown	gnl\|CDD\|234573
NZ_CP047794.1\|WP_047213641.1\|2811191_2811818_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP047794.1\|WP_000522380.1\|2805542_2806169_-\|nitroreductase-family-protein	unknown	unknown	gnl\|CDD\|226090
NZ_CP047794.1\|WP_000705240.1\|2823984_2824167_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP047794.1\|WP_106459828.1\|2804405_2805191_-\|carbon-nitrogen-family-hydrolase	unknown	unknown	gnl\|CDD\|143607
NZ_CP047794.1\|WP_072512925.1\|2806365_2807553_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|236768
NZ_CP047794.1\|WP_000046023.1\|2803727_2803808_+\|delta-hemolysin	unknown	unknown	gnl\|CDD\|173213
NZ_CP047794.1\|WP_000191459.1\|2823191_2823806_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP047794.1\|WP_001013104.1\|2823802_2823949_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP047794.1\|WP_001045081.1\|2812389_2813697_-\|TrkH-family-potassium-uptake-protein	unknown	unknown	gnl\|CDD\|273349
NZ_CP047794.1\|WP_031918283.1\|2808495_2808780_+\|co-chaperone-GroES	unknown	unknown	gnl\|CDD\|178988
NZ_CP047794.1\|WP_031927406.1\|2814328_2815531_+\|5-aminolevulinate-synthase	unknown	unknown	gnl\|CDD\|236370
NZ_CP047794.1\|WP_000197641.1\|2807577_2808321_-\|CPBP-family-intramembrane-metalloprotease	unknown	unknown	gnl\|CDD\|376806
NZ_CP047794.1\|WP_000857174.1\|2822046_2823084_-\|site-specific-integrase	unknown	unknown	gnl\|CDD\|271189
NZ_CP047794.1\|WP_000206632.1\|2816900_2818124_-\|ArgE/DapE-family-deacylase	unknown	unknown	gnl\|CDD\|181490
NZ_CP047794.1\|WP_001108473.1\|2815533_2816403_+\|DMT-family-transporter	unknown	unknown	gnl\|CDD\|273359
NZ_CP047794.1\|WP_000201394.1\|2811015_2811195_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP047794.1\|WP_000791409.1\|2818559_2819615_+\|bi-component-leukocidin-LukGH-subunit-H	unknown	unknown	gnl\|CDD\|369625
NZ_CP047794.1\|WP_047213639.1\|2819636_2820653_+\|bi-component-leukocidin-LukGH-subunit-G	unknown	unknown	gnl\|CDD\|369625
NZ_CP047794.1\|WP_106459806.1\|2824237_2824957_-\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225484

Protein	Function_ID	Function_description	E-value
NZ_CP047794.1\|WP_000240648.1\|2808855_2810472_+\|chaperonin-GroEL	gnl\|CDD\|234573	PRK00013, groEL, chaperonin GroEL; Reviewed.	0
NZ_CP047794.1\|WP_047213639.1\|2819636_2820653_+\|bi-component-leukocidin-LukGH-subunit-G	gnl\|CDD\|369625	pfam07968, Leukocidin, Leukocidin/Hemolysin toxin family.	7.62134e-98
NZ_CP047794.1\|WP_000522380.1\|2805542_2806169_-\|nitroreductase-family-protein	gnl\|CDD\|226090	COG3560, FMR2, Predicted oxidoreductase related to nitroreductase [General function prediction only].	5.0673e-115
NZ_CP047794.1\|WP_106459828.1\|2804405_2805191_-\|carbon-nitrogen-family-hydrolase	gnl\|CDD\|143607	cd07583, nitrilase_5, Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.	8.49156e-126
NZ_CP047794.1\|WP_072512925.1\|2806365_2807553_+\|hypothetical-protein	gnl\|CDD\|236768	PRK10819, PRK10819, transport protein TonB; Provisional.	7.99091e-08
NZ_CP047794.1\|WP_000046023.1\|2803727_2803808_+\|delta-hemolysin	gnl\|CDD\|173213	PRK14752, PRK14752, delta-lysin family phenol-soluble modulin.	2.50854e-06
NZ_CP047794.1\|WP_001045081.1\|2812389_2813697_-\|TrkH-family-potassium-uptake-protein	gnl\|CDD\|273349	TIGR00933, Trk_system_potassium_uptake_protein_trkH., potassium uptake protein, TrkH family. The proteins of the Trk family are derived from Gram-negative and Gram-positive bacteria, yeast and wheat. The proteins of E. coli K12 TrkH and TrkG as well as several yeast proteins have been functionally characterized.The E. coli TrkH and TrkG proteins are complexed to two peripheral membrane proteins, TrkA, an NAD-binding protein, and TrkE, an ATP-binding protein. This complex forms the potassium uptake system. [Transport and binding proteins, Cations and iron carrying compounds].	9.80292e-81
NZ_CP047794.1\|WP_031927406.1\|2814328_2815531_+\|5-aminolevulinate-synthase	gnl\|CDD\|236370	PRK09064, PRK09064, 5-aminolevulinate synthase; Validated.	0
NZ_CP047794.1\|WP_031918283.1\|2808495_2808780_+\|co-chaperone-GroES	gnl\|CDD\|178988	PRK00364, groES, co-chaperonin GroES; Reviewed.	1.20776e-44
NZ_CP047794.1\|WP_001108473.1\|2815533_2816403_+\|DMT-family-transporter	gnl\|CDD\|273359	TIGR00950, Uncharacterized_inner_membrane_transporter_YicL, Carboxylate/Amino Acid/Amine Transporter. [Transport and binding proteins, Amino acids, peptides and amines].	2.86916e-09
NZ_CP047794.1\|WP_000197641.1\|2807577_2808321_-\|CPBP-family-intramembrane-metalloprotease	gnl\|CDD\|376806	pfam02517, Abi, CAAX protease self-immunity. Members of this family are probably proteases (after a isoprenyl group is attached to the Cys residue in the C-terminal CAAX motif of a protein to attach it to the membrane, the AAX tripeptide being removed by one of the CAAX prenyl proteases). The family contains the CAAX prenyl protease. The proteins contain a highly conserved Glu-Glu motif at the amino end of the alignment. The alignment also contains two histidine residues that may be involved in zinc binding. While they are involved in membrane anchoring of proteins in eukaryotes, little is known about their function in prokaryotes. In some known bacteriocin loci, Abi genes have been found downstream of bacteriocin structural genes where they are probably involved in self-immunity. Investigation of the bacteriocin-like loci in the Gram positive bacteria locus from Lactobacillus sakei 23K confirmed that the bacteriocin-like genes (sak23Kalphabeta) exhibited antimicrobial activity when expressed in a heterologous host and that the associated Abi gene (sak23Ki) conferred immunity against the cognate bacteriocin. Interestingly, the immunity genes from three similar systems conferred a high degree of cross-immunity against each other's bacteriocins, suggesting the recognition of a common receptor. Site-directed mutagenesis demonstrated that the conserved motifs constituting the putative proteolytic active site of the Abi proteins are essential for the immunity function of Sak23Ki - thus a new concept in self-immunity.	2.23687e-11
NZ_CP047794.1\|WP_000857174.1\|2822046_2823084_-\|site-specific-integrase	gnl\|CDD\|271189	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons. This family of tyrosine based site-specific integrases is has origins in bacterial phages and conjugate transposons. One member is the integrase from Bacillus subtilis conjugative transposon ICEBs1. ICEBs1 can be excised and transfered to various recipients in response to DNA damage or high concentrations of potential mating partners. The family belongs to the superfamily of DNA breaking-rejoining enzymes, which share the same fold in their catalytic domain and the overall reaction mechanism. The catalytic domain contains six conserved active site residues. Their overall reaction mechanism involves cleavage of a single strand of a DNA duplex by nucleophilic attack of a conserved tyrosine to give a 3' phosphotyrosyl protein-DNA adduct. In the second rejoining step, a terminal 5' hydroxyl attacks the covalent adduct to release the enzyme and generate duplex DNA.	4.6482e-25
NZ_CP047794.1\|WP_000206632.1\|2816900_2818124_-\|ArgE/DapE-family-deacylase	gnl\|CDD\|181490	PRK08588, PRK08588, succinyl-diaminopimelate desuccinylase; Reviewed.	0
NZ_CP047794.1\|WP_000791409.1\|2818559_2819615_+\|bi-component-leukocidin-LukGH-subunit-H	gnl\|CDD\|369625	pfam07968, Leukocidin, Leukocidin/Hemolysin toxin family.	1.31423e-77
NZ_CP047794.1\|WP_106459806.1\|2824237_2824957_-\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|225484	COG2932, COG2932, Predicted transcriptional regulator [Transcription].	5.47227e-16

>NZ_CP047794.1|WP_001045081.1|2812389_2813697_-|TrkH-family-potassium-uptake-protein
MNKVHKPLYFYLMLFFSTTIIGALLLYLPFTGKKPISFLDALFIASSAFTVTGLSPVDIGSQFNILGEIVILLLIQIGGLGIVTVTLLTLVFLNRKISMKNRFLIMVTWNIDEPGGVIKLIKHLAIYSLVTELIGMICLCLSFIPKFGIGKGLFLSLFTSVSAFNNAGFALFKNNLIDYSSDPIVIITISILIIFGGIGHFVVIDFINCKKLSKLSLHSKLVLTTTSILIIIGAITFFLLEQFNTMQNMGLVEKIGNSFFQSVTTRTAGFNSIDIASINKSTALMLMLLMFIGGAPLSASGGIKITTFAVAFIFVLNYIRKENNVSVFNKEISDKHIKLSIVTINISFLFISIITFILSIINPNISLIKLLFEVVSAFGTVGLSMNLTTEYHGITKIIIIFVMLCGKVGLLTLLRTFIPPKSPKNYRYTKGQIYL
>NZ_CP047794.1|WP_047213641.1|2811191_2811818_+|hypothetical-protein
MTVKVISLSELLTGDKQEVKRKIPSVLNILNSFETISISGSESAHDVDLFLKNKSIAFDRQNLSRTHLVFSQFKSKQILVGYFTISNKPLVFTKRMLDKISNTLKKKLYQKGKTHSGNDNLIIQGYLIAQIGKNYSEEALATKSINGNDLLTLAYEKVLEGANIFGGSYIWIDYEDVDRLREFYRKFGFTEIKDHTSENNLKMAILKI
>NZ_CP047794.1|WP_000201394.1|2811015_2811195_+|hypothetical-protein
MATISITTDYKFTKKSAQKLIDAMEINENKSNVNKTNIKATKIKSTCEIENLLKDYRSN
>NZ_CP047794.1|WP_000240648.1|2808855_2810472_+|chaperonin-GroEL
MVKQLKFSEDARQAMLRGVDQLANAVKVTIGPKGRNVVLDKEFTAPLITNDGVTIAKEIELEDPYENMGAKLVQEVANKTNEIAGDGTTTATVLAQAMIQEGLKNVTSGANPVGLRQGIDKAVKVAVEALHENSQKVENKNEIAQVGAISAADEEIGRYISEAMEKVGNDGVITIEESNGLNTELEVVEGMQFDRGYQSPYMVTDSDKMVAELERPYILVTDKKISSFQDILPLLEQVVQSNRPILIVADEVEGDALTNIVLNRMRGTFTAVAVKAPGFGDRRKAMLEDLAILTGAQVITDDLGLDLKDASIDMLGTASKVEVTKDNTTVVDGDGDENSIDARVSQLKSQIEETESDFDREKLQERLAKLAGGVAVIKVGAASETELKERKLRIEDALNSTRAAVEEGIVAGGGTALVNVYQKVSEIKAEGDIETGVNIVLKALTAPVRQIAENAGLEGSVIVERLKNAEPGVGFNAATNEWVNMLEAGIVDPTKVTRSALQHAASVAAMFLTTEAVVASIPEKNNDQPNMGGMPGMM
>NZ_CP047794.1|WP_031918283.1|2808495_2808780_+|co-chaperone-GroES
MLKPIGNRVIIEKKEQEQTTKSGIVLTDSAKEKSNEGVIVAVGTGRLLNDGTRVTPEVKKGDRVVFQQYAGTEVKRDNETYLVLNEEDILAVIE
>NZ_CP047794.1|WP_000197641.1|2807577_2808321_-|CPBP-family-intramembrane-metalloprotease
MTRLWASLLTVIIYILSQFLPLLIVTKLPFVQYSGIELTKAVIYIQLVLFLIAATTIILINLKIKNPTKLELEVKEPKKYIIPWALLGFALVMIYQMVVSIVYTQIFGTQQTSPNTERLIVIARKIPLFIFFVSIVGPLLEEYVFRKVIFGELFNAIKGNRIVAFAIATTVSSLIFALAHNDYKFIPIYFGMGVIFSLAYVWTKRLAVPIIIHMLQNGFVVIFQLLNPEALKKATEQANFIYHIFIP
>NZ_CP047794.1|WP_072512925.1|2806365_2807553_+|hypothetical-protein
MSYHWFKKMLLSTSILILSSSSLGLATHTVEAKDNLNGEKPTTNLNHNVTSPSVNSEINNNETGTPHESNQTGNEGTNSNSRDANPDSNNVKPDSNNQNPSSDSKPDPNNPNPGPNPKPDPDKPKPNPDPDPKPDPDKPKPNPNPKPDPDKPKPNPNPKPDPNKPNPNPSPDPNQPGDSNHSGGSKNGGTWNPNASDGSNQGQWQPNGNQGNSQNPTGNDFVSQRFLALANGAYKYNPYILNQINQLGKEFGEVTDEDIYNIIRKQNFSGNAYLNGLQQQSNYFRFQYFNPLKSERYYRNLDEQVLALITGEIGSMPDLKKPEDKPDSKQRSFEPHEKDDFTVVKKQEDNKKSASTAYSKSWLAIVCSMMVVFSIMLFLFVKRNKKKNKNESQRR
>NZ_CP047794.1|WP_000522380.1|2805542_2806169_-|nitroreductase-family-protein
MGLFKKDKKAMTFDNAMEERRSIYNLKDSISISDDELESMIAHAVKHVPSSFNSQSTRIVLLLNDNNNKFWDNTKAILKEVMGENRDFEPTEQKIDNFKHSYGTILFYEDQDVVSGLQEQMPNYYDNFAIWSTQTNAMHQFAIWTALATKGIGASLQHYNPLVDEITSNEFNIPKSWKLIAQMPFGDIREAAGEKTFNPVEDRFVIKK
>NZ_CP047794.1|WP_106459828.1|2804405_2805191_-|carbon-nitrogen-family-hydrolase
MKVQIYQLPIIFGDSSKNETQITQWFEKNMNDEVDVVVLPEMWNNGYDLEHLNEKADNNLGQSFSFIKHLAEKYKVDIVAGSVSNIRNNQIFNTAFSVNKSGQLINEYDKVHLVPMLREHEFLTAGENVAEPFQLSDGTYVTQLICYDLRFPELLRYPARSGAKIAFYVAQWPMSRLQHWHSLLKARAIENNMFVIGTNSTGFNGNTEYAGHSIVINPNGDLVGELNESADILTVDLNLNEVEQQRENIPVFKSIKLDLYK
>NZ_CP047794.1|WP_000046023.1|2803727_2803808_+|delta-hemolysin
MAQDIISTISDLVKWIIDTVNKFTKK
>NZ_CP047794.1|WP_031927406.1|2814328_2815531_+|5-aminolevulinate-synthase
MYKTLFFDKIAELKEKGSYRIFTEINRIANKYPLAKGEDGKEVVVFCSNDYLGMSQNQEVINVMSDALKEYGAGAGGSRNIGGSHKYFKLLENEIAKWHKKDSALVFPTGYSSNDAALQGLLRIFPEMIVFSDSKNHASIINALRSVKNKIEIFEHNNVKHLNELLNQYDINIPKLIVFESVYSMDGDIAPIVEIVELAKEYNSLTFLDEVHAIGMYGEEGRGYSDVVGVQEDIDIIQSTMAKGIGIIGGYITGDQLLIDVIRSYSSGFIFTTALPPVIAAGCLTSIKIVRSNDKLREELQDKTKYLKEKFKENGIEVLKQSKTHILPVIIGDSKKCEEAAKLLLDKFNIYVQAINSPTVEIGTERFRINVTPNHTKEQMDLLVSSIVYVFDFLNIRRSV
>NZ_CP047794.1|WP_001108473.1|2815533_2816403_+|DMT-family-transporter
MNYLMYLFCMFIWGLNFIAVKIQGDSLPLEVALLYRSLIAFSLFGVMFIFIFKKLKLNNTNWFTIIGFGLCNFTISYLLLYYGTFYSSAAIVTLIFSMKAILTPIFISMVFKRKISNRIYIGGGLGVVSVVVILYPDLNSLTNEFIIGVAFALLGTIITSIGDVLSLYNSESKVHPVLSNTIGMLSAVIFLLIYTSFKGYRYSFPLELNFWFGLLYLSILASFLAWFFYLKLINNIGAAESGYMVAMFPAIGGIASVIMGETHLSINLVVGIILACMGAYLALYKPKPS
>NZ_CP047794.1|WP_000206632.1|2816900_2818124_-|ArgE/DapE-family-deacylase
MTTFSEKEKIQLLADIVELQTENNNEIDVCNYLKDLFDKYDIKSEILKVNEHRANIVAEIGNGSPILALSGHMDVVDAGNQDNWTYPPFQLTEKDGKLYGRGTTDMKGGLMALVITLIELKEQNQLPQGTIRLLATAGEEKEQEGAKLLADKGYLDDVDGLIIAEPTGSGIYYAHKGSMSCKVTATGKAVHSSVPFIGDNAIDTLLEFYNQFKEKYSELKKHDTKHELDVAPMFKSLIGKEISEEDANYASGLTAVCSIINGGKQFNSVPDEASLEFNVRPVPEYDNDFIESFFQNIINNVNSNKLSLDIPSNHRPVTSDKNSKLITTIKDVASSYVNKDDIFVSALVGATDASSFLGDNKDNVDLAIFGPGNPLMAHQIDEYIEKDMYLKYIDIFKEASIQYLKEK
>NZ_CP047794.1|WP_000791409.1|2818559_2819615_+|bi-component-leukocidin-LukGH-subunit-H
MKNKKRVLIASSLSCAILLLSAATTQANSAHKDSQDQNKKEHVDKSQQKDKRNVTNKDKNSTVPDDIGKNGKITKRTETVYDEKTNILQNLQFDFIDDPTYDKNVLLVKKQGSIHSNLKFESHKEEKNSNWLKYPSEYHVDFQVKRNPKTEILDQLPKNKISTAKVDSTFSYSSGGKFDSTKGIGRTSSNSYSKTISYNQQNYDTIASGKNNNWHVHWSVIANDLKYGGEVKNRNDELLFYRNTRIATVENPELSFASKYRYPALVRSGFNPEFLTYLSNEKSNEKTQFEVTYTRNQDILKNRPGIHYAPPILEKNKDGQRLIVTYEVDWKNKTVKVVDKYSDDNKPYKEG
>NZ_CP047794.1|WP_047213639.1|2819636_2820653_+|bi-component-leukocidin-LukGH-subunit-G
MIKQLYKNITICSLAISTALTVFPATSYAKINSEIKAVSEKNLDGDTKMYTRTATTSDSQKNITQSLQFNFLTESNYDKETVFIKAKGTIGSGLRILEPNGYWNSTLRWPGSYSVSIQNVDDNNNTNVTDFAPKNQDESREVKYTYGYKTGGDFSINRGGLTGNITKESNYSETISYQQPSYRTLLDQSTSHKGVGWKVEAHLINNMGHDHTRQLTNDSDNRTKSEIFSLTRNGNLWAKDNFTPKDKMPVTVSEGFNPEFLAVMSHDKKDKGKSQFVVHYKRSMDEFKIDWNRHGFWGYWSGENHVDKKEEKLSALYEVDWKTHDVKFVKVLNDNEKK
>NZ_CP047794.1|WP_000857174.1|2822046_2823084_-|site-specific-integrase
MKTRCYDGKKWQYEFKHEGKRYRKKGFRTKREANSAGLDKLNELRSGFNIDNYITLAEYFENWIKTYKQPVVKENTYRHYRNALQHIQKHKIGKMELSKINRQVYQKFINDYSKEHAKETIRKTNGAIRSALDDALYDGLIFKNPAYKVNYKAGKPTKSEQEKFISVTEYEILKDHVRKKRTRSSLALFIMICTGCRVSGARNIKIEHINQVKNTIFIDERKTDTSPRYISIAKSDMKHIMDVISTFAISYDGYIFKEAGFIINLQAINNALKSACRVNNIPIITSHALRHTHCSYLLAKGVSIHYISKRLGHKNIAITTSVYSHLLEEKFNEEDKKTTKILESM
>NZ_CP047794.1|WP_000191459.1|2823191_2823806_+|hypothetical-protein
MTQFLGALLLTGVLGYIPYKYLTMIGLVSEKNKIINTPVLLIFSIETCLIWFYTFIIFNNVDLKNLSLLQLLTGLKANIWFLIIFVLTVLVFNPLIVKFIIWLINETRKFMNLDCISLLDKRDKLFNNNGKPVFIVIKDFENRIIEEGELKTYNSAGSDFDLLEVERQDFKVSDLPSNDELYIKHTLVDLKQQIKLDLYLMNEY
>NZ_CP047794.1|WP_001013104.1|2823802_2823949_-|hypothetical-protein
MNGGENFMADKNKKQEATRSNPINKSFEKPGASENLKSTLSEKAKKKD
>NZ_CP047794.1|WP_000705240.1|2823984_2824167_-|hypothetical-protein
MKITNCKIKKETIVYEVLTSGNQPFTYELPKDLSSHNARKYLEFISQKIDGDKLTKEDSL
>NZ_CP047794.1|WP_106459806.1|2824237_2824957_-|helix-turn-helix-transcriptional-regulator
MDKKELAKFIGNKIRYYRTKLNLTQDQLGEKLNTKKATISNYETGYRTPKQDDLFEIAHILNISIDDLFPTRNNKKNDITSIYNKLTPPRQKNVLNYANEQLDEQNKVTSIDGYKESKLVSYIACGATGAGIGEELYDDILHEEVFFKEDETPSNADFCILVNGDSMEPMLKQGTYAFIKKEDSIKDGTIALVVLDGVSLIKRVDICEDYINLVSLNPKYDDIKVASFSNIKVMGKVVL

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NZ_CP047794_3	3.1\|1255209\|31\|NZ_CP047794\|CRISPRCasFinder	1255209-1255239	31	NZ_CP047794.1	883004-883034	0	1.0
NZ_CP047794_3	3.1\|1255209\|31\|NZ_CP047794\|CRISPRCasFinder	1255209-1255239	31	NZ_CP047794.1	970404-970434	0	1.0
NZ_CP047794_3	3.1\|1255209\|31\|NZ_CP047794\|CRISPRCasFinder	1255209-1255239	31	NZ_CP047794.1	2788525-2788555	0	1.0
NZ_CP047794_3	3.1\|1255209\|31\|NZ_CP047794\|CRISPRCasFinder	1255209-1255239	31	NZ_CP047794.1	1932672-1932702	0	1.0
NZ_CP047794_4	4.1\|1304042\|33\|NZ_CP047794\|CRISPRCasFinder	1304042-1304074	33	NZ_CP047794.1	883118-883150	0	1.0
NZ_CP047794_13	13.1\|2813861\|34\|NZ_CP047794\|CRISPRCasFinder	2813861-2813894	34	NZ_CP047794.1	1255144-1255177	0	1.0
NZ_CP047794_13	13.1\|2813861\|34\|NZ_CP047794\|CRISPRCasFinder	2813861-2813894	34	NZ_CP047794.1	1313021-1313054	0	1.0
NZ_CP047794_4	4.1\|1304042\|33\|NZ_CP047794\|CRISPRCasFinder	1304042-1304074	33	NZ_CP047794.1	970518-970550	1	0.97
NZ_CP047794_4	4.1\|1304042\|33\|NZ_CP047794\|CRISPRCasFinder	1304042-1304074	33	NZ_CP047794.1	79977-80009	1	0.97
NZ_CP047794_4	4.1\|1304042\|33\|NZ_CP047794\|CRISPRCasFinder	1304042-1304074	33	NZ_CP047794.1	1313141-1313173	1	0.97
NZ_CP047794_4	4.1\|1304042\|33\|NZ_CP047794\|CRISPRCasFinder	1304042-1304074	33	NZ_CP047794.1	1836492-1836524	1	0.97
NZ_CP047794_6	6.1\|1592265\|28\|NZ_CP047794\|CRISPRCasFinder	1592265-1592292	28	NZ_CP047794.1	79986-80013	1	0.964
NZ_CP047794_6	6.1\|1592265\|28\|NZ_CP047794\|CRISPRCasFinder	1592265-1592292	28	NZ_CP047794.1	1313150-1313177	1	0.964
NZ_CP047794_6	6.1\|1592265\|28\|NZ_CP047794\|CRISPRCasFinder	1592265-1592292	28	NZ_CP047794.1	1484801-1484828	1	0.964
NZ_CP047794_13	13.1\|2813861\|34\|NZ_CP047794\|CRISPRCasFinder	2813861-2813894	34	NZ_CP047794.1	974550-974583	1	0.971
NZ_CP047794_13	13.1\|2813861\|34\|NZ_CP047794\|CRISPRCasFinder	2813861-2813894	34	NZ_CP047794.1	1359133-1359166	1	0.971
NZ_CP047794_13	13.1\|2813861\|34\|NZ_CP047794\|CRISPRCasFinder	2813861-2813894	34	NZ_CP047794.1	1743787-1743820	1	0.971
NZ_CP047794_3	3.1\|1255209\|31\|NZ_CP047794\|CRISPRCasFinder	1255209-1255239	31	NZ_CP047794.1	883118-883148	2	0.935
NZ_CP047794_3	3.1\|1255209\|31\|NZ_CP047794\|CRISPRCasFinder	1255209-1255239	31	NZ_CP047794.1	1592210-1592240	2	0.935
NZ_CP047794_3	3.1\|1255209\|31\|NZ_CP047794\|CRISPRCasFinder	1255209-1255239	31	NZ_CP047794.1	453918-453948	2	0.935
NZ_CP047794_3	3.1\|1255209\|31\|NZ_CP047794\|CRISPRCasFinder	1255209-1255239	31	NZ_CP047794.1	1836494-1836524	2	0.935
NZ_CP047794_6	6.1\|1592265\|28\|NZ_CP047794\|CRISPRCasFinder	1592265-1592292	28	NZ_CP047794.1	883114-883141	2	0.929
NZ_CP047794_13	13.1\|2813861\|34\|NZ_CP047794\|CRISPRCasFinder	2813861-2813894	34	NZ_CP047794.1	1250977-1251010	2	0.941
NZ_CP047794_13	13.1\|2813861\|34\|NZ_CP047794\|CRISPRCasFinder	2813861-2813894	34	NZ_CP047794.1	718941-718974	2	0.941

1. spacer 3.1|1255209|31|NZ_CP047794|CRISPRCasFinder matches to position: 883004-883034, mismatch: 0, identity: 1.0

gaagctggcggaaagtcagcttacaataatg	CRISPR spacer
gaagctggcggaaagtcagcttacaataatg	Protospacer
*******************************

2. spacer 3.1|1255209|31|NZ_CP047794|CRISPRCasFinder matches to position: 970404-970434, mismatch: 0, identity: 1.0

gaagctggcggaaagtcagcttacaataatg	CRISPR spacer
gaagctggcggaaagtcagcttacaataatg	Protospacer
*******************************

3. spacer 3.1|1255209|31|NZ_CP047794|CRISPRCasFinder matches to position: 2788525-2788555, mismatch: 0, identity: 1.0

gaagctggcggaaagtcagcttacaataatg	CRISPR spacer
gaagctggcggaaagtcagcttacaataatg	Protospacer
*******************************

4. spacer 3.1|1255209|31|NZ_CP047794|CRISPRCasFinder matches to position: 1932672-1932702, mismatch: 0, identity: 1.0

gaagctggcggaaagtcagcttacaataatg	CRISPR spacer
gaagctggcggaaagtcagcttacaataatg	Protospacer
*******************************

5. spacer 4.1|1304042|33|NZ_CP047794|CRISPRCasFinder matches to position: 883118-883150, mismatch: 0, identity: 1.0

cagaagctgacgaaaagtcagcttacaataatg	CRISPR spacer
cagaagctgacgaaaagtcagcttacaataatg	Protospacer
*********************************

6. spacer 13.1|2813861|34|NZ_CP047794|CRISPRCasFinder matches to position: 1255144-1255177, mismatch: 0, identity: 1.0

ccaacacagagaatttcgaaaagaaattctacaa	CRISPR spacer
ccaacacagagaatttcgaaaagaaattctacaa	Protospacer
**********************************

7. spacer 13.1|2813861|34|NZ_CP047794|CRISPRCasFinder matches to position: 1313021-1313054, mismatch: 0, identity: 1.0

ccaacacagagaatttcgaaaagaaattctacaa	CRISPR spacer
ccaacacagagaatttcgaaaagaaattctacaa	Protospacer
**********************************

8. spacer 4.1|1304042|33|NZ_CP047794|CRISPRCasFinder matches to position: 970518-970550, mismatch: 1, identity: 0.97

cagaagctgacgaaaagtcagcttacaataatg	CRISPR spacer
cagaagctgacgaaaagtcagcttacaagaatg	Protospacer
**************************** ****

9. spacer 4.1|1304042|33|NZ_CP047794|CRISPRCasFinder matches to position: 79977-80009, mismatch: 1, identity: 0.97

cagaagctgacgaaaagtcagcttacaataatg	CRISPR spacer
cagaagctgacgaaaagtcagcttacgataatg	Protospacer
**************************.******

10. spacer 4.1|1304042|33|NZ_CP047794|CRISPRCasFinder matches to position: 1313141-1313173, mismatch: 1, identity: 0.97

cagaagctgacgaaaagtcagcttacaataatg	CRISPR spacer
cagaagctgacgaaaagtcagcttacgataatg	Protospacer
**************************.******

11. spacer 4.1|1304042|33|NZ_CP047794|CRISPRCasFinder matches to position: 1836492-1836524, mismatch: 1, identity: 0.97

cagaagctgacgaaaagtcagcttacaataatg	CRISPR spacer
cagaagctgacgtaaagtcagcttacaataatg	Protospacer
************ ********************

12. spacer 6.1|1592265|28|NZ_CP047794|CRISPRCasFinder matches to position: 79986-80013, mismatch: 1, identity: 0.964

tgcactttatcgtaagctgacttttcgt	CRISPR spacer
tgcacattatcgtaagctgacttttcgt	Protospacer
***** **********************

13. spacer 6.1|1592265|28|NZ_CP047794|CRISPRCasFinder matches to position: 1313150-1313177, mismatch: 1, identity: 0.964

tgcactttatcgtaagctgacttttcgt	CRISPR spacer
tgcacattatcgtaagctgacttttcgt	Protospacer
***** **********************

14. spacer 6.1|1592265|28|NZ_CP047794|CRISPRCasFinder matches to position: 1484801-1484828, mismatch: 1, identity: 0.964

tgcactttatcgtaagctgacttttcgt	CRISPR spacer
tgcacattatcgtaagctgacttttcgt	Protospacer
***** **********************

15. spacer 13.1|2813861|34|NZ_CP047794|CRISPRCasFinder matches to position: 974550-974583, mismatch: 1, identity: 0.971

ccaacacagagaatttcgaaaagaaattctacaa	CRISPR spacer
ccaacacagataatttcgaaaagaaattctacaa	Protospacer
********** ***********************

16. spacer 13.1|2813861|34|NZ_CP047794|CRISPRCasFinder matches to position: 1359133-1359166, mismatch: 1, identity: 0.971

ccaacacagagaatttcgaaaagaaattctacaa	CRISPR spacer
ccaacaaagagaatttcgaaaagaaattctacaa	Protospacer
****** ***************************

17. spacer 13.1|2813861|34|NZ_CP047794|CRISPRCasFinder matches to position: 1743787-1743820, mismatch: 1, identity: 0.971

ccaacacagagaatttcgaaaagaaattctacaa	CRISPR spacer
ccaacaaagagaatttcgaaaagaaattctacaa	Protospacer
****** ***************************

18. spacer 3.1|1255209|31|NZ_CP047794|CRISPRCasFinder matches to position: 883118-883148, mismatch: 2, identity: 0.935

gaagctggcggaaagtcagcttacaataatg	CRISPR spacer
gaagctgacgaaaagtcagcttacaataatg	Protospacer
*******.**.********************

19. spacer 3.1|1255209|31|NZ_CP047794|CRISPRCasFinder matches to position: 1592210-1592240, mismatch: 2, identity: 0.935

gaagctggcggaaagtcagcttacaataatg	CRISPR spacer
gaagctgtcggaaagtcagcatacaataatg	Protospacer
******* ************ **********

20. spacer 3.1|1255209|31|NZ_CP047794|CRISPRCasFinder matches to position: 453918-453948, mismatch: 2, identity: 0.935

gaagctggcggaaagtcagcttacaataatg	CRISPR spacer
gaagctgacgaaaagtcagcttacaataatg	Protospacer
*******.**.********************

21. spacer 3.1|1255209|31|NZ_CP047794|CRISPRCasFinder matches to position: 1836494-1836524, mismatch: 2, identity: 0.935

gaagctggcggaaagtcagcttacaataatg	CRISPR spacer
gaagctgacgtaaagtcagcttacaataatg	Protospacer
*******.** ********************

22. spacer 6.1|1592265|28|NZ_CP047794|CRISPRCasFinder matches to position: 883114-883141, mismatch: 2, identity: 0.929

tgcactttatcgtaagctgacttttcgt	CRISPR spacer
tgcacattattgtaagctgacttttcgt	Protospacer
***** ****.*****************

23. spacer 13.1|2813861|34|NZ_CP047794|CRISPRCasFinder matches to position: 1250977-1251010, mismatch: 2, identity: 0.941

ccaacacagagaatttcgaaaagaaattctacaa	CRISPR spacer
ccaacatagaggatttcgaaaagaaattctacaa	Protospacer
******.****.**********************

24. spacer 13.1|2813861|34|NZ_CP047794|CRISPRCasFinder matches to position: 718941-718974, mismatch: 2, identity: 0.941

ccaacacagagaatttcgaaaagaaattctacaa	CRISPR spacer
ccaacacagagaatttcgaaaagaaatcccacaa	Protospacer
***************************.*.****

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP047794_6	6.1\|1592265\|28\|NZ_CP047794\|CRISPRCasFinder	1592265-1592292	28	NC_021536	Synechococcus phage S-IOM18 genomic sequence	159754-159781	5	0.821
NZ_CP047794_2	2.1\|1070122\|29\|NZ_CP047794\|CRISPRCasFinder	1070122-1070150	29	NZ_CP015322	Mesorhizobium amorphae CCNWGS0123 plasmid pM0123d, complete sequence	703321-703349	6	0.793
NZ_CP047794_6	6.1\|1592265\|28\|NZ_CP047794\|CRISPRCasFinder	1592265-1592292	28	LN846932	Carnobacterium maltaromaticum strain LMA28 LMA_pa plamid, complete genome	10627-10654	6	0.786
NZ_CP047794_6	6.1\|1592265\|28\|NZ_CP047794\|CRISPRCasFinder	1592265-1592292	28	NZ_CP015319	Mesorhizobium amorphae CCNWGS0123 plasmid pM0123a	9464-9491	7	0.75
NZ_CP047794_12	12.1\|2788427\|32\|NZ_CP047794\|PILER-CR	2788427-2788458	32	NZ_AP022840	Legionella sp. TUM19329 plasmid pTUM19329-1	98273-98304	9	0.719

1. spacer 6.1|1592265|28|NZ_CP047794|CRISPRCasFinder matches to NC_021536 (Synechococcus phage S-IOM18 genomic sequence) position: , mismatch: 5, identity: 0.821

tgcactttatcgtaagctgacttttcgt	CRISPR spacer
taaattttatcgtaaggtgagttttcgt	Protospacer
*. *.*********** *** *******

2. spacer 2.1|1070122|29|NZ_CP047794|CRISPRCasFinder matches to NZ_CP015322 (Mesorhizobium amorphae CCNWGS0123 plasmid pM0123d, complete sequence) position: , mismatch: 6, identity: 0.793

atgcgctcagcgcaagtatccctctttta	CRISPR spacer
atgcgctcagcgcaaggaaccctttgatc	Protospacer
**************** * ****.*  *

3. spacer 6.1|1592265|28|NZ_CP047794|CRISPRCasFinder matches to LN846932 (Carnobacterium maltaromaticum strain LMA28 LMA_pa plamid, complete genome) position: , mismatch: 6, identity: 0.786

tgcactttatcgtaagctgacttttcgt	CRISPR spacer
actaatttatcgtaatctgatttttcgt	Protospacer
  .* ********** ****.*******

4. spacer 6.1|1592265|28|NZ_CP047794|CRISPRCasFinder matches to NZ_CP015319 (Mesorhizobium amorphae CCNWGS0123 plasmid pM0123a) position: , mismatch: 7, identity: 0.75

tgcactttatcgtaagctgacttttcgt	CRISPR spacer
aaagctttttcgtaagctgacatttcga	Protospacer
 . .**** ************ *****

5. spacer 12.1|2788427|32|NZ_CP047794|PILER-CR matches to NZ_AP022840 (Legionella sp. TUM19329 plasmid pTUM19329-1) position: , mismatch: 9, identity: 0.719

ccattgtctgtagaaattggtgttccaatttc	CRISPR spacer
aatttgtctatagaaactggtgttcctcctgc	Protospacer
   ******.******.*********  .* *

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

0 : 24120

Staphylococcus_phage(100.0%)

head,portal,tail,terminase,holin,protease,capsid

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000133304.1\|0_1695_+\|terminase	phage terminase large subunit	D2JLE4	Staphylococcus_phage	0.0e+00	100.0
WP_000644965.1\|1669_1909_+	membrane protein	A7TWC1	Staphylococcus_phage	7.0e-35	100.0
WP_011447040.1\|1974_3165_+\|portal	phage portal protein	D2JLE6	Staphylococcus_phage	1.8e-224	100.0
WP_000032525.1\|3157_3742_+\|head,protease	HK97 family phage prohead protease	D2JLE7	Staphylococcus_phage	9.8e-107	100.0
WP_000849950.1\|3829_5077_+\|capsid	phage major capsid protein	A7TWC4	Staphylococcus_phage	5.0e-209	100.0
WP_001252099.1\|5112_5271_+	hypothetical protein	D2JLE9	Staphylococcus_phage	3.2e-20	100.0
WP_001177483.1\|5279_5612_+\|head,tail	phage head-tail adapter protein	D2JLF0	Staphylococcus_phage	2.1e-58	100.0
WP_000975314.1\|5598_5934_+\|head,tail	head-tail adaptor protein	A7TWC7	Staphylococcus_phage	1.1e-59	100.0
WP_000501244.1\|5933_6311_+	HK97 gp10 family phage protein	D2JLF2	Staphylococcus_phage	1.1e-61	100.0
WP_000611452.1\|6307_6688_+	hypothetical protein	D2JLF3	Staphylococcus_phage	5.8e-68	100.0
WP_000570652.1\|6688_7642_+\|tail	phage tail protein	A7TWD0	Staphylococcus_phage	6.2e-175	100.0
WP_000442602.1\|7706_8153_+	hypothetical protein	O80053	Staphylococcus_phage	1.9e-73	96.6
WP_000570353.1\|8212_8335_+	hypothetical protein	D2JLF6	Staphylococcus_phage	6.9e-15	100.0
WP_042908137.1\|8390_13040_+\|tail	phage tail tape measure protein	A0A1V0E5H1	Staphylococcus_phage	0.0e+00	98.2
WP_001154327.1\|13039_14530_+\|tail	phage tail protein	D2JLF8	Staphylococcus_phage	8.2e-299	100.0
WP_031927805.1\|14545_18331_+	phage minor structural protein	D2JLF9	Staphylococcus_phage	0.0e+00	99.4
WP_000654329.1\|18320_18473_+	hypothetical protein	D2JLG0	Staphylococcus_phage	1.2e-19	98.0
WP_001040255.1\|18519_18807_+	hypothetical protein	A0A075LZJ6	Staphylococcus_phage	5.8e-44	100.0
WP_000340977.1\|18862_19237_+	hypothetical protein	G4KNR3	Staphylococcus_phage	3.3e-39	100.0
WP_072357969.1\|19379_19556_+\|holin	putative holin-like toxin	D2JLG3	Staphylococcus_phage	6.5e-22	96.6
WP_031762631.1\|19608_19716_-	hypothetical protein	NA	NA	NA	NA
WP_000611512.1\|19767_20022_+\|holin	phage holin	D2JLG4	Staphylococcus_phage	4.1e-41	100.0
WP_000861038.1\|20033_20789_+	CHAP domain-containing protein	D2JLG5	Staphylococcus_phage	3.4e-152	100.0
WP_000920038.1\|20979_21471_+	staphylokinase	A0A1W6JQ12	Staphylococcus_phage	4.7e-86	99.4
WP_001110821.1\|22160_22457_+	peptidoglycan hydrolase	A0A1P8L6B4	Staphylococcus_phage	1.1e-48	94.9
WP_000702263.1\|22967_23318_+	complement inhibitor SCIN-A	A0A1P8L6B0	Staphylococcus_phage	7.5e-54	100.0
WP_001791826.1\|23369_23630_-	hypothetical protein	M9NS66	Staphylococcus_phage	2.3e-23	100.0
WP_000669791.1\|23940_24120_-	hypothetical protein	A0A1W6JQ29	Staphylococcus_phage	1.4e-24	98.3

DBSCAN-SWA_2

144395 : 266846

141

Staphylococcus_phage(87.93%)

head,portal,transposase,plate,tRNA,tail,terminase,integrase,holin,protease,capsid

attL 135224:135241|attR 233277:233294

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
135224:135241	attL	NA	NA	NA	NA
WP_001807150.1\|144395_145715_-\|transposase	ISL3-like element IS1181 family transposase	NA	NA	NA	NA
WP_047213579.1\|145804_146335_-	signal transduction protein TRAP	NA	NA	NA	NA
WP_000233535.1\|146596_147634_+	uroporphyrinogen decarboxylase	NA	NA	NA	NA
WP_000162881.1\|147691_148615_+	ferrochelatase	NA	NA	NA	NA
WP_000167553.1\|148638_150039_+	protoporphyrinogen oxidase	NA	NA	NA	NA
WP_000132893.1\|150358_150913_+	serine hydrolase family protein	NA	NA	NA	NA
WP_000146088.1\|152205_153255_-\|integrase	site-specific integrase	A0A2H4JB53	uncultured_Caudovirales_phage	5.2e-183	90.3
WP_031790084.1\|153316_153832_-	hypothetical protein	A9CR44	Staphylococcus_phage	6.3e-41	94.2
WP_000525009.1\|153849_154311_-	hypothetical protein	W5R9J0	Staphylococcus_phage	1.2e-83	100.0
WP_001260487.1\|154323_154647_-	helix-turn-helix transcriptional regulator	A0A0H3U2V8	Staphylococcus_phage	2.0e-53	100.0
WP_000272859.1\|154810_155059_+	helix-turn-helix transcriptional regulator	A0A2K9VBT6	Staphylococcus_phage	1.7e-39	100.0
WP_000435360.1\|155071_155515_+	hypothetical protein	W5R971	Staphylococcus_phage	1.5e-75	100.0
WP_000939495.1\|155529_155670_+	hypothetical protein	A0A2I6PDT8	Staphylococcus_phage	1.9e-16	100.0
WP_000772137.1\|155662_155872_-	hypothetical protein	A0A2I6PDR8	Staphylococcus_phage	9.1e-31	100.0
WP_031925041.1\|155928_156642_+	antirepressor	A0A059T7N7	Staphylococcus_phage	2.1e-127	98.7
WP_000455728.1\|156654_156864_+	hypothetical protein	A0A2H4PQR1	Staphylococcus_phage	9.7e-33	100.0
WP_031928972.1\|156877_157039_+	DUF1270 family protein	O80077	Staphylococcus_phage	7.2e-20	98.1
WP_000291089.1\|157132_157393_+	DUF1108 family protein	Q4ZBM7	Staphylococcus_phage	1.2e-43	100.0
WP_000999048.1\|157405_157942_+	hypothetical protein	A0A2I6PD93	Staphylococcus_phage	1.7e-81	100.0
WP_000840496.1\|157942_158593_+	single-stranded DNA-binding protein	A0A0F6N3I5	Staphylococcus_phage	1.1e-119	100.0
WP_001099010.1\|158589_159033_+	single-stranded DNA-binding protein	A0A2I6PD99	Staphylococcus_phage	3.2e-73	95.9
WP_031928974.1\|159044_159719_+	phi PV83 orf 19-like protein	A1KX69	Staphylococcus_virus	1.5e-130	99.6
WP_000371250.1\|159824_160682_-	DUF4393 domain-containing protein	Q4ZBL8	Staphylococcus_phage	9.5e-159	100.0
WP_000190223.1\|160746_161517_+	hypothetical protein	A0A0N6WMQ8	Staphylococcus_phage	1.8e-116	100.0
WP_000803062.1\|161526_162306_+	ATP-binding protein	G4KNP1	Staphylococcus_phage	3.8e-146	100.0
WP_000256597.1\|162299_162458_+	hypothetical protein	Q4ZBL5	Staphylococcus_phage	3.4e-22	100.0
WP_001123684.1\|162470_162692_+	DUF3269 family protein	Q4ZBL4	Staphylococcus_phage	1.7e-35	100.0
WP_015967236.1\|162701_163106_+	DUF1064 domain-containing protein	Q9G020	Staphylococcus_virus	9.6e-69	100.0
WP_031793838.1\|163110_163296_+	DUF3113 family protein	M1SNY0	Staphylococcus_phage	2.1e-26	98.4
WP_114665714.1\|163296_163665_+	hypothetical protein	Q9B0F5	Staphylococcus_virus	2.2e-51	95.1
WP_000132292.1\|163668_163911_+	hypothetical protein	A0A2K9VBX5	Staphylococcus_phage	1.1e-40	100.0
WP_024937270.1\|163924_164329_+	hypothetical protein	A0A0E3T8H9	Staphylococcus_phage	4.6e-71	99.2
WP_000979209.1\|164325_164673_+	hypothetical protein	D2JGL4	Staphylococcus_phage	5.9e-59	100.0
WP_000982708.1\|164791_165241_+	hypothetical protein	A0A2I6PDH2	Staphylococcus_phage	9.3e-81	100.0
WP_001105620.1\|165237_165522_+	hypothetical protein	A0A2I6PDI3	Staphylococcus_phage	9.4e-47	100.0
WP_031928976.1\|165514_165763_+	DUF1024 family protein	Q9MBR1	Staphylococcus_prophage	1.0e-36	96.3
WP_000185706.1\|165755_166286_+	hypothetical protein	I1W653	Staphylococcus_phage	9.2e-96	100.0
WP_001613442.1\|166322_166610_+	DUF1381 domain-containing protein	Q4ZAB6	Staphylococcus_virus	4.4e-44	96.8
WP_000608276.1\|166602_166839_+	hypothetical protein	A0A2I6PEM4	Staphylococcus_phage	2.0e-34	94.9
WP_160199080.1\|166828_167215_+	hypothetical protein	A0A2I6PDC1	Staphylococcus_phage	3.7e-62	96.9
WP_160199081.1\|167214_167388_+	transcriptional regulator	Q4ZBK0	Staphylococcus_phage	7.1e-21	98.2
WP_000286968.1\|167388_167790_+	hypothetical protein	A0A2H4PQK5	Staphylococcus_phage	5.6e-69	100.0
WP_072328463.1\|168143_168638_+\|terminase	terminase	A0A2I6PCU5	Staphylococcus_phage	1.3e-83	100.0
WP_160199082.1\|168630_169839_+\|terminase	PBSX family phage terminase large subunit	R4IG95	Staphylococcus_phage	2.3e-235	99.8
WP_001159668.1\|169792_171271_+\|portal	phage portal protein	Q4ZB45	Staphylococcus_virus	3.3e-284	99.6
WP_049881759.1\|171209_172193_+	hypothetical protein	A0A0N7E0U6	Staphylococcus_phage	6.8e-169	96.5
WP_000346033.1\|172194_172401_+	hypothetical protein	A0A0N9BB04	Staphylococcus_phage	3.2e-28	100.0
WP_000366932.1\|172505_173102_+	hypothetical protein	R4IG73	Staphylococcus_phage	5.6e-73	100.0
WP_001135558.1\|173122_173947_+\|capsid	N4-gp56 family major capsid protein	R4IH32	Staphylococcus_phage	5.6e-148	100.0
WP_000278799.1\|173963_174290_+	hypothetical protein	A0A0E3TAL3	Staphylococcus_phage	4.3e-51	100.0
WP_000338935.1\|174289_174604_+\|head,tail	phage head-tail adapter protein	R4IFL8	Staphylococcus_phage	4.0e-54	100.0
WP_000482986.1\|174596_174932_+\|head	phage head closure protein	A0A2H4PQL0	Staphylococcus_phage	3.0e-60	100.0
WP_001151335.1\|174918_175332_+	HK97 gp10 family phage protein	R4IG77	Staphylococcus_phage	2.0e-77	100.0
WP_000270196.1\|175344_175782_+	DUF3168 domain-containing protein	A0A0E3T9M9	Staphylococcus_phage	2.1e-77	100.0
WP_000046067.1\|175768_176329_+	hypothetical protein	A0A0H4ITY2	Staphylococcus_phage	5.9e-101	100.0
WP_000141082.1\|176390_176885_+	hypothetical protein	R4IFM1	Staphylococcus_phage	4.3e-87	100.0
WP_001580347.1\|176905_177247_+	hypothetical protein	A0A2H4PQL5	Staphylococcus_phage	3.5e-56	100.0
WP_000414234.1\|177249_180219_+\|terminase	terminase	R4IG82	Staphylococcus_phage	1.5e-280	99.7
WP_000560193.1\|180233_181169_+\|tail	phage tail protein	A7YGW1	Staphylococcus_virus	4.5e-178	98.7
WP_044556775.1\|181179_183063_+	peptidase	A0A0H4ITY6	Staphylococcus_phage	0.0e+00	99.0
WP_160199083.1\|183075_184974_+	hypothetical protein	R4IFM4	Staphylococcus_phage	0.0e+00	99.7
WP_160199084.1\|184973_186797_+\|plate	phage baseplate upper protein	A0A0F6N3G2	Staphylococcus_phage	0.0e+00	99.5
WP_000705896.1\|186796_187174_+	DUF2977 domain-containing protein	A0A0F6N3G4	Staphylococcus_phage	1.5e-60	100.0
WP_033858151.1\|187177_187351_+	XkdX family protein	A0A0F6N3L7	Staphylococcus_phage	1.9e-26	98.2
WP_000466777.1\|187390_187690_+	DUF2951 domain-containing protein	A0A0F6N3M6	Staphylococcus_phage	9.9e-47	100.0
WP_115292769.1\|187826_189701_+	CHAP domain-containing protein	Q9FZY4	Staphylococcus_virus	0.0e+00	99.2
WP_160199085.1\|189713_190952_+\|plate	BppU family phage baseplate upper protein	E0Y3M8	Staphylococcus_virus	7.7e-210	99.8
WP_000398873.1\|190956_191352_+	hypothetical protein	Q4ZDC6	Staphylococcus_virus	2.1e-68	99.2
WP_000354132.1\|191407_191845_+\|holin	phage holin	A0A2H4PQP0	Staphylococcus_phage	4.1e-73	100.0
WP_001148136.1\|191825_193271_+	CHAP domain-containing protein	Q08JW9	Staphylococcus_phage	1.8e-295	99.8
WP_000528632.1\|194226_194784_+	hypothetical protein	W5R8Q1	Staphylococcus_phage	5.7e-104	100.0
WP_001807150.1\|195235_196555_+\|transposase	ISL3-like element IS1181 family transposase	NA	NA	NA	NA
WP_129754921.1\|196781_197564_+	staphylococcal enterotoxin type O	A0A1X9H080	Staphylococcus_phage	6.7e-34	37.9
WP_000821651.1\|197842_198562_+	staphylococcal enterotoxin type M	A0A1X9H080	Staphylococcus_phage	5.8e-24	34.3
WP_031927819.1\|198596_199328_+	staphylococcal enterotoxin type I	A0A1X9H080	Staphylococcus_phage	5.1e-28	39.2
WP_031927818.1\|199478_200264_+	staphylococcal enterotoxin type C1/U	A0A097PAT7	Streptococcus_pyogenes_phage	3.8e-45	42.7
WP_001236367.1\|200302_201058_+	staphylococcal enterotoxin type N	A0A075M4C7	Staphylococcus_phage	3.9e-39	41.0
WP_031927817.1\|201341_202118_+	staphylococcal enterotoxin type G	NA	NA	NA	NA
WP_000554278.1\|203402_204002_-	hypothetical protein	NA	NA	NA	NA
WP_000410108.1\|204349_204571_-	hypothetical protein	NA	NA	NA	NA
WP_031927815.1\|204844_205339_-	hypothetical protein	NA	NA	NA	NA
WP_000848321.1\|205735_206512_-	DUF1828 domain-containing protein	NA	NA	NA	NA
WP_106459764.1\|206532_206769_-	hypothetical protein	NA	NA	NA	NA
WP_106459763.1\|207732_208668_+	beta-channel forming cytolysin	A0A2H4PQI5	Staphylococcus_phage	6.7e-174	99.7
WP_000782462.1\|208669_209653_+	beta-channel forming cytolysin	A0A2H4PQH7	Staphylococcus_phage	3.4e-184	98.8
WP_031927813.1\|210021_210813_-	DUF1828 domain-containing protein	NA	NA	NA	NA
WP_000550245.1\|210817_211291_-	hypothetical protein	NA	NA	NA	NA
WP_025174462.1\|211544_211763_+	hypothetical protein	A0A2H4PQH0	Staphylococcus_phage	4.1e-26	83.3
WP_001092761.1\|212236_212815_-	DUF4888 domain-containing protein	A0A2H4PQH6	Staphylococcus_phage	1.5e-67	74.0
WP_106459762.1\|214601_215324_+\|protease	serine protease SplB	A0A2H4PQN0	Staphylococcus_phage	2.4e-126	95.4
WP_001038864.1\|215381_216101_+\|protease	serine protease	A0A2H4PQP7	Staphylococcus_phage	2.4e-123	92.9
WP_001038741.1\|216226_216946_+\|protease	serine protease SplF	A0A2H4PQP1	Staphylococcus_phage	4.0e-126	95.8
WP_106459761.1\|217309_218854_+	type I restriction-modification system subunit M	A0A2H4PQP4	Staphylococcus_phage	1.3e-283	98.5
WP_047213567.1\|218846_220037_+	restriction endonuclease subunit S	A0A2H4PQP5	Staphylococcus_phage	1.5e-45	34.7
WP_000742593.1\|220673_221123_+	DUF1433 domain-containing protein	NA	NA	NA	NA
WP_000747794.1\|221436_221880_+	DUF1433 domain-containing protein	NA	NA	NA	NA
WP_160199086.1\|221879_222323_+	DUF1433 domain-containing protein	NA	NA	NA	NA
WP_106459760.1\|222508_223084_+	ImmA/IrrE family metallo-endopeptidase	A0A2H4PQN8	Staphylococcus_phage	4.5e-72	89.6
WP_000414223.1\|223281_223854_-	hypothetical protein	A0A2H4PQN4	Staphylococcus_phage	7.1e-25	93.1
WP_000627546.1\|223954_224296_-	DUF3969 family protein	A0A2H4PQN6	Staphylococcus_phage	3.0e-55	94.7
WP_047213559.1\|224336_224963_-	hypothetical protein	A0A2H4PQM7	Staphylococcus_phage	2.8e-75	92.4
WP_000070657.1\|225037_226033_-	DUF4352 domain-containing protein	A0A2H4PQN2	Staphylococcus_phage	2.9e-74	96.8
WP_072357764.1\|226114_226765_-	calcium-binding protein	A0A2H4PQM8	Staphylococcus_phage	9.5e-34	67.6
WP_072357839.1\|227066_227522_+	DUF4909 domain-containing protein	A0A2H4PQN7	Staphylococcus_phage	1.4e-79	98.6
WP_000348367.1\|227680_229159_+	o-succinylbenzoate--CoA ligase	A0A2H4PQM9	Staphylococcus_phage	6.9e-282	96.7
WP_000778513.1\|229163_230165_+	o-succinylbenzoate synthase	A0A2H4PQM0	Staphylococcus_phage	8.2e-186	97.3
WP_000718107.1\|230161_230419_-	membrane protein insertion efficiency factor YidD	A0A2H4PQM5	Staphylococcus_phage	7.2e-46	100.0
WP_000672018.1\|230484_230958_+	nucleoside triphosphatase YtkD	A0A2H4PQM4	Staphylococcus_phage	1.0e-82	97.5
WP_072357842.1\|230962_231709_+	S9 family peptidase	A0A2H4PQM6	Staphylococcus_phage	1.3e-140	97.6
WP_000109907.1\|232003_233596_-	phosphoenolpyruvate carboxykinase (ATP)	A0A2H4PQN1	Staphylococcus_phage	0.0e+00	99.8
233277:233294	attR	NA	NA	NA	NA
WP_000933822.1\|233967_235161_+	methionine adenosyltransferase	A0A2H4PQS6	Staphylococcus_phage	1.9e-218	99.7
WP_000366163.1\|235285_236194_+	NERD domain-containing protein	A0A2H4PQQ8	Staphylococcus_phage	3.4e-138	100.0
WP_000453315.1\|236405_237239_+	aldo/keto reductase	A0A2H4PQR8	Staphylococcus_phage	1.2e-158	99.6
WP_000623473.1\|237488_237842_-	CrcB family protein	A0A2H4PQQ7	Staphylococcus_phage	4.2e-20	77.8
WP_001200550.1\|237838_238204_-	fluoride efflux transporter CrcB	A0A2H4PQR0	Staphylococcus_phage	6.2e-59	98.3
WP_000091445.1\|238459_238762_-	hypothetical protein	NA	NA	NA	NA
WP_001096494.1\|239019_239733_+	transaldolase	M1PR54	Cyanophage	5.5e-19	35.3
WP_001168909.1\|240169_240805_-\|protease	CPBP family intramembrane metalloprotease SdpA	NA	NA	NA	NA
WP_001030469.1\|241102_241546_+	hypothetical protein	A0A2H4PQT8	Staphylococcus_phage	2.4e-57	98.6
WP_001153740.1\|241532_241976_-	competence protein ComK	NA	NA	NA	NA
WP_000671048.1\|242088_242559_-	RNA polymerase sigma factor	A0A2H4PQT5	Staphylococcus_phage	4.8e-80	96.8
WP_000384171.1\|242757_242982_+	hypothetical protein	NA	NA	NA	NA
WP_001032833.1\|243257_244112_+	autolysin	Q4ZCC7	Staphylococcus_virus	9.8e-39	38.6
WP_000163240.1\|244461_244857_-	arsenate reductase (thioredoxin)	A0A2H4PQT9	Staphylococcus_phage	2.4e-72	99.2
WP_000989112.1\|244874_246167_-	arsenite efflux transporter membrane subunit ArsB	A0A2H4PQU3	Staphylococcus_phage	8.8e-225	97.7
WP_000221188.1\|246166_246481_-	winged helix-turn-helix transcriptional regulator	A0A2H4PQT4	Staphylococcus_phage	2.8e-52	97.1
WP_047213554.1\|247001_248504_+	FAD-dependent oxidoreductase	A0A2H4PQX2	Staphylococcus_phage	8.6e-30	98.6
WP_000384178.1\|248996_250028_+	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	A0A2H4PQS8	Staphylococcus_phage	6.9e-196	98.8
WP_000493884.1\|250034_250667_+	riboflavin synthase	A0A2H4PQS5	Staphylococcus_phage	1.4e-111	98.6
WP_047213550.1\|250677_251859_+	bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II	A0A2H4PQS2	Staphylococcus_phage	5.1e-227	99.7
WP_001008551.1\|251871_252336_+	6,7-dimethyl-8-ribityllumazine synthase	A0A2H4PQS3	Staphylococcus_phage	5.8e-70	99.4
WP_001196354.1\|252457_253459_-	proline dehydrogenase	A0A2H4PQT6	Staphylococcus_phage	9.0e-185	99.7
WP_072357767.1\|253570_253690_+	hypothetical protein	NA	NA	NA	NA
WP_000266089.1\|253692_254520_+	alpha/beta hydrolase	NA	NA	NA	NA
WP_000757543.1\|255090_255492_+	MarR family transcriptional regulator	NA	NA	NA	NA
WP_000764419.1\|255611_256175_-	methyltransferase domain-containing protein	A0A2H4PQV0	Staphylococcus_phage	8.3e-103	99.5
WP_000526539.1\|256171_257125_-	TIGR01212 family radical SAM protein	A0A2H4PQV5	Staphylococcus_phage	2.2e-79	100.0
WP_001025061.1\|257234_258416_+	MFS transporter	A0A2H4PQR6	Staphylococcus_phage	5.6e-218	100.0
WP_001108719.1\|258706_261121_+\|tRNA	leucine--tRNA ligase	A0A2H4PQS0	Staphylococcus_phage	0.0e+00	99.3
WP_000836469.1\|261142_261454_+	rhodanese-like domain-containing protein	A0A2H4PQR9	Staphylococcus_phage	4.5e-50	96.1
WP_160199087.1\|261779_266846_+	DUF1542 domain-containing protein	A0A2H4PQU6	Staphylococcus_phage	7.3e-291	92.5

DBSCAN-SWA_3

395496 : 404539

uncultured_Mediterranean_phage(50.0%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001005767.1\|395496_396501_+	Holliday junction branch migration DNA helicase RuvB	B3GAM6	uncultured_virus	1.7e-05	29.1
WP_001019170.1\|396502_397528_+\|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	NA	NA	NA	NA
WP_001112045.1\|397550_398690_+\|tRNA	tRNA guanosine(34) transglycosylase Tgt	A0A1B1IVQ4	uncultured_Mediterranean_phage	5.4e-85	44.7
WP_001160682.1\|398708_398969_+	preprotein translocase subunit YajC	A0A1B1IVR5	uncultured_Mediterranean_phage	8.2e-05	35.3
WP_000749803.1\|399243_401523_+	protein translocase subunit SecDF	A0A1B1IVP7	uncultured_Mediterranean_phage	1.8e-31	35.8
WP_042908036.1\|401725_403999_+	single-stranded-DNA-specific exonuclease RecJ	A7KV88	Bacillus_phage	8.1e-64	29.3
WP_000364542.1\|404020_404539_+	adenine phosphoribosyltransferase	A0A1V0SKE5	Klosneuvirus	5.6e-29	46.5

DBSCAN-SWA_4

474018 : 482330

Caulobacter_phage(16.67%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_106459684.1\|474018_475818_+	DNA primase	A0A0K1LMQ9	Caulobacter_phage	3.0e-53	36.1
WP_001283055.1\|476041_477148_+	RNA polymerase sigma factor RpoD	A0A2I7SAT0	Vibrio_phage	1.1e-37	38.1
WP_000624574.1\|477278_477956_+\|tRNA	tRNA (adenine-N(1))-methyltransferase	NA	NA	NA	NA
WP_000683926.1\|477958_479059_+	Nif3-like dinuclear metal center hexameric protein	A0A1S5V250	Saudi_moumouvirus	2.3e-08	30.6
WP_001062177.1\|479172_480519_+	DEAD/DEAH box helicase	A0A1V0SIR5	Klosneuvirus	2.4e-55	34.0
WP_000924216.1\|480528_481419_+	deoxyribonuclease IV	A0A2H4UU70	Bodo_saltans_virus	2.0e-26	33.1
WP_001213908.1\|481544_482330_+	metal ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	8.0e-19	28.3

DBSCAN-SWA_5

758130 : 799370

Staphylococcus_phage(38.71%)

portal,transposase,terminase,tail,head,holin,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_052724874.1\|758130_759471_-	hypothetical protein	A0A1J0MFV1	Staphylococcus_phage	7.0e-140	58.7
WP_000997672.1\|759725_759935_-	helix-turn-helix domain-containing protein	A0A1W6JNK0	Staphylococcus_phage	1.9e-12	59.4
WP_000907423.1\|760338_760767_-	hypothetical protein	NA	NA	NA	NA
WP_000459699.1\|760766_761081_-	hypothetical protein	NA	NA	NA	NA
WP_001019311.1\|761093_761597_-	hypothetical protein	NA	NA	NA	NA
WP_001793526.1\|761790_761988_-	hypothetical protein	A0A1W6JNK0	Staphylococcus_phage	9.9e-11	50.0
WP_031927627.1\|762463_763384_-	N-acetylmuramoyl-L-alanine amidase	A0A1W6JQL2	Staphylococcus_phage	1.2e-66	50.2
WP_047213423.1\|763448_763832_-\|holin	phage holin family protein	H9A0W5	Staphylococcus_phage	4.3e-18	39.2
WP_000665466.1\|763815_764130_-	hypothetical protein	NA	NA	NA	NA
WP_000569801.1\|764164_764575_-	hypothetical protein	A0A1I9KKA6	Lactobacillus_phage	3.9e-09	32.8
WP_000571592.1\|768002_768761_-	hypothetical protein	NA	NA	NA	NA
WP_031927625.1\|768763_772945_-\|tail	phage tail tape measure protein	Q9T0X1	Lactobacillus_phage	3.2e-58	42.6
WP_000159313.1\|773002_773227_-	hypothetical protein	NA	NA	NA	NA
WP_000021684.1\|773274_773625_-	hypothetical protein	NA	NA	NA	NA
WP_000213868.1\|773652_774336_-	hypothetical protein	NA	NA	NA	NA
WP_000072314.1\|774341_774779_-	hypothetical protein	NA	NA	NA	NA
WP_000114215.1\|774778_775117_-	hypothetical protein	NA	NA	NA	NA
WP_000744618.1\|775100_775445_-\|head	phage head closure protein	NA	NA	NA	NA
WP_000406284.1\|775419_775725_-	hypothetical protein	A0A059T7R0	Listeria_phage	6.0e-15	44.8
WP_000152780.1\|775746_776916_-	hypothetical protein	A0A0U4JIF4	Bacillus_phage	1.2e-98	50.5
WP_047213417.1\|776942_777629_-\|protease	Clp protease ClpP	A0A2H4J8Y7	uncultured_Caudovirales_phage	1.4e-43	49.5
WP_000523761.1\|777628_778765_-\|portal	phage portal protein	A0A2H4JBZ5	uncultured_Caudovirales_phage	7.8e-84	41.4
WP_046463075.1\|778780_780424_-\|terminase	terminase large subunit	A0A0U4B089	Bacillus_phage	8.4e-180	57.3
WP_000868798.1\|780407_780740_-	hypothetical protein	NA	NA	NA	NA
WP_000870118.1\|781058_781349_-	HNH endonuclease	D2XR61	Bacillus_phage	1.3e-19	43.2
WP_000933402.1\|781781_782273_-	hypothetical protein	S5MAA9	Brevibacillus_phage	7.4e-07	30.0
WP_106459773.1\|782577_784452_-	DNA primase	A0A1B1P7L5	Bacillus_phage	3.1e-210	57.5
WP_000584491.1\|784483_784675_-	hypothetical protein	NA	NA	NA	NA
WP_000231299.1\|785095_785566_+	hypothetical protein	NA	NA	NA	NA
WP_000792984.1\|785588_785894_-	hypothetical protein	A0A2H4JF73	uncultured_Caudovirales_phage	6.2e-36	73.7
WP_000394569.1\|785969_786359_-	hypothetical protein	U3PG42	Staphylococcus_phage	4.5e-07	51.9
WP_000560476.1\|786462_788181_-	hypothetical protein	A0A1B1P7M5	Bacillus_phage	1.9e-211	63.6
WP_106459774.1\|788462_788945_-	DUF669 domain-containing protein	A0A2H4J1S8	uncultured_Caudovirales_phage	3.7e-19	37.3
WP_001250666.1\|788990_789197_-	hypothetical protein	NA	NA	NA	NA
WP_031927619.1\|789214_791041_-	AAA family ATPase	A0A1B1P7N0	Bacillus_phage	2.6e-166	56.3
WP_000160835.1\|791030_791336_-	hypothetical protein	A0A1B1P7M6	Bacillus_phage	5.8e-26	59.3
WP_025174483.1\|791328_791646_-	hypothetical protein	A0A2P0ZLA7	Lactobacillus_phage	7.1e-19	43.2
WP_001002734.1\|791636_792887_-	helicase SNF2	A0A1B1P7L4	Bacillus_phage	1.8e-134	57.8
WP_000786635.1\|792891_793158_-	hypothetical protein	A0A2I6PDG2	Staphylococcus_phage	3.9e-18	53.6
WP_000072840.1\|793551_793713_-	DUF1270 family protein	R4IH12	Staphylococcus_phage	1.1e-12	69.8
WP_001157026.1\|793811_794495_-	phage repressor protein	A9CR56	Staphylococcus_phage	8.0e-108	86.0
WP_000800340.1\|794554_794761_+	hypothetical protein	A1BTY8	Staphylococcus_virus	4.3e-25	75.0
WP_000932237.1\|795184_795460_-	hypothetical protein	NA	NA	NA	NA
WP_001209962.1\|795486_795705_-	DUF739 family protein	A0A2I6PE94	Staphylococcus_phage	4.9e-19	62.5
WP_000664916.1\|795872_796265_+	helix-turn-helix domain-containing protein	A0A2I6PE55	Staphylococcus_phage	2.7e-28	53.6
WP_047212960.1\|796421_797741_-\|transposase	ISL3-like element IS1181 family transposase	NA	NA	NA	NA
WP_000554410.1\|797936_798320_+	hypothetical protein	NA	NA	NA	NA
WP_047213408.1\|798331_799027_+	hypothetical protein	A0A2H4J5B8	uncultured_Caudovirales_phage	1.8e-06	40.9
WP_108630597.1\|799079_799370_+	hypothetical protein	A0A1W6JQD3	Staphylococcus_phage	7.0e-05	51.9

DBSCAN-SWA_6

1282171 : 1294348

Staphylococcus_phage(55.56%)

integrase,capsid

attL 1267976:1267990|attR 1291020:1291034

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1267976:1267990	attL	NA	NA	NA	NA
WP_000253083.1\|1282171_1282663_-	hypothetical protein	A0A2H4JB26	uncultured_Caudovirales_phage	3.0e-24	39.9
WP_160199114.1\|1282846_1283905_-\|capsid	phage capsid protein	NA	NA	NA	NA
WP_000884055.1\|1283891_1284098_-	hypothetical protein	NA	NA	NA	NA
WP_001081426.1\|1284322_1284667_-	hypothetical protein	A0A1W6JQD5	Staphylococcus_phage	5.5e-41	65.2
WP_160199115.1\|1285339_1287712_-	DNA primase	A0A2H4JCU9	uncultured_Caudovirales_phage	4.1e-135	39.2
WP_160199116.1\|1287803_1288103_-	DUF1474 family protein	Q4ZE75	Staphylococcus_phage	2.6e-39	81.8
WP_001058500.1\|1288103_1288328_-	hypothetical protein	A0A1W6JPA6	Staphylococcus_phage	2.9e-14	60.3
WP_000163544.1\|1288478_1288697_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_000583241.1\|1288848_1289586_+	helix-turn-helix transcriptional regulator	A0A1W6JQE6	Staphylococcus_phage	1.2e-05	31.2
WP_031898813.1\|1289600_1290707_+\|integrase	site-specific integrase	H0UST3	Bacillus_phage	6.9e-77	43.9
WP_000586155.1\|1290718_1290934_+	hypothetical protein	NA	NA	NA	NA
WP_001085185.1\|1291489_1291954_-	SsrA-binding protein SmpB	W5RAM5	Staphylococcus_phage	1.5e-81	100.0
1291020:1291034	attR	NA	NA	NA	NA
WP_031927540.1\|1291975_1294348_-	ribonuclease R	Q0GXV6	Lactococcus_phage	7.3e-92	38.6

DBSCAN-SWA_7

1346786 : 1360979

uncultured_Caudovirales_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000616870.1\|1346786_1347548_-	ABC transporter ATP-binding protein	Q9EMR9	Amsacta_moorei_entomopoxvirus	5.0e-18	31.6
WP_001245577.1\|1347544_1348501_-	iron chelate uptake ABC transporter family permease subunit	A0A2H4J116	uncultured_Caudovirales_phage	1.2e-05	57.8
WP_047213721.1\|1348490_1349459_-	ABC transporter permease	A0A2H4IY97	uncultured_Caudovirales_phage	8.0e-138	79.1
WP_000499194.1\|1349497_1349653_-	hypothetical protein	NA	NA	NA	NA
WP_000562498.1\|1349828_1350800_-	class 1b ribonucleoside-diphosphate reductase subunit beta	A0A2H4J4P3	uncultured_Caudovirales_phage	4.2e-171	91.3
WP_000855505.1\|1350917_1353023_-	class 1b ribonucleoside-diphosphate reductase subunit alpha	A0A2H4J2N6	uncultured_Caudovirales_phage	0.0e+00	91.7
WP_000692523.1\|1352985_1353384_-	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	A0A2H4J545	uncultured_Caudovirales_phage	4.3e-53	72.7
WP_001068503.1\|1354184_1355051_+	DMT family transporter	NA	NA	NA	NA
WP_000930020.1\|1355070_1355571_+	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	E7DN65	Pneumococcus_phage	2.2e-51	70.8
WP_000193751.1\|1355910_1357416_+	peptide MFS transporter	A0A0P0IY73	Acinetobacter_phage	2.0e-58	32.2
WP_000429016.1\|1357697_1358615_+	diacylglycerol kinase family lipid kinase	A0A1V0SBJ0	Catovirus	2.1e-07	22.4
WP_000197262.1\|1359220_1359763_-	5'-3'-deoxyribonucleotidase	NA	NA	NA	NA
WP_000663031.1\|1359920_1360979_-	histidinol-phosphate transaminase	A0A1X6WGT4	Pacmanvirus	2.3e-21	26.4

DBSCAN-SWA_8

1372951 : 1380771

Pandoravirus(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001217797.1\|1372951_1374103_-	anthranilate synthase component I family protein	S4VNU7	Pandoravirus	2.1e-23	36.1
WP_000604509.1\|1374086_1374680_-	aminodeoxychorismate/anthranilate synthase component II	A0A0P0IKJ1	Acinetobacter_phage	1.5e-38	44.0
WP_000446721.1\|1375030_1375699_+	7-cyano-7-deazaguanine synthase QueC	A0A2H4J8Q7	uncultured_Caudovirales_phage	9.6e-66	57.1
WP_000941334.1\|1375700_1376120_+	6-carboxytetrahydropterin synthase QueD	S4U060	uncultured_phage	6.3e-07	28.7
WP_001062968.1\|1376123_1376837_+	7-carboxy-7-deazaguanine synthase QueE	A0A1U9WRB6	Streptococcus_virus	6.5e-52	43.5
WP_000637683.1\|1376935_1377520_+	hypothetical protein	NA	NA	NA	NA
WP_001093557.1\|1377799_1378240_+	DM13 domain-containing protein	NA	NA	NA	NA
WP_001037811.1\|1378581_1379055_+	DoxX family protein	NA	NA	NA	NA
WP_000149344.1\|1379029_1379716_+	response regulator transcription factor	NA	NA	NA	NA
WP_000244415.1\|1379715_1380771_+	HAMP domain-containing histidine kinase	A0A1V0SGX0	Hokovirus	3.6e-14	29.8

DBSCAN-SWA_9

2818559 : 2840055

Staphylococcus_phage(89.74%)

terminase,integrase

attL 2821677:2821691|attR 2829857:2829871

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000791409.1\|2818559_2819615_+	bi-component leukocidin LukGH subunit H	A0A1X9IGW5	Staphylococcus_phage	1.9e-36	34.6
WP_047213639.1\|2819636_2820653_+	bi-component leukocidin LukGH subunit G	A0A1X9IGW5	Staphylococcus_phage	1.1e-25	30.2
2821677:2821691	attL	NA	NA	NA	NA
WP_000857174.1\|2822046_2823084_-\|integrase	site-specific integrase	A7TWL3	Staphylococcus_phage	1.7e-178	99.7
WP_000191459.1\|2823191_2823806_+	hypothetical protein	A7TW88	Staphylococcus_phage	7.9e-107	100.0
WP_001013104.1\|2823802_2823949_-	hypothetical protein	A0A2I6PEK8	Staphylococcus_phage	1.1e-14	89.6
WP_000705240.1\|2823984_2824167_-	hypothetical protein	A0A2I6PDR4	Staphylococcus_phage	5.3e-27	100.0
WP_106459806.1\|2824237_2824957_-	helix-turn-helix transcriptional regulator	Q8SDX2	Staphylococcus_phage	1.9e-131	99.2
WP_001198673.1\|2825098_2825317_+	helix-turn-helix transcriptional regulator	Q8SDX1	Staphylococcus_phage	2.9e-35	100.0
WP_000435341.1\|2825329_2825590_+	transcriptional regulator	A7TW91	Staphylococcus_phage	2.7e-40	100.0
WP_106459807.1\|2825613_2826153_-	hypothetical protein	A7TW92	Staphylococcus_phage	3.8e-97	99.4
WP_106459808.1\|2826209_2826959_+	oxidoreductase	Q8SDM9	Staphylococcus_phage	2.2e-135	99.2
WP_001566738.1\|2826975_2827170_+	hypothetical protein	Q4ZDS1	Staphylococcus_virus	1.0e-23	100.0
WP_000768245.1\|2827164_2827521_-	DUF2513 domain-containing protein	A0A1P8L6H1	Staphylococcus_phage	6.1e-59	100.0
WP_000389905.1\|2827570_2827762_+	hypothetical protein	Q4ZDR9	Staphylococcus_virus	2.1e-26	100.0
WP_000801108.1\|2827763_2827991_-	hypothetical protein	A7TWL9	Staphylococcus_phage	1.7e-38	100.0
WP_001120935.1\|2828049_2828370_+	DUF771 domain-containing protein	Q4ZDR7	Staphylococcus_virus	1.5e-56	100.0
WP_000066020.1\|2828366_2828528_+	DUF1270 domain-containing protein	A0A2I6PDF7	Staphylococcus_phage	1.9e-20	100.0
WP_000291489.1\|2828620_2828881_+	DUF1108 family protein	A0A1W6JQ03	Staphylococcus_phage	7.6e-43	100.0
WP_001205732.1\|2828889_2829153_+	hypothetical protein	A0A2I6PDG2	Staphylococcus_phage	7.7e-43	100.0
WP_160199160.1\|2829161_2831105_+	AAA family ATPase	R9QT82	Staphylococcus_phage	0.0e+00	98.5
2829857:2829871	attR	NA	NA	NA	NA
WP_000138475.1\|2831106_2832027_+	recombinase	A0A2I6PDH5	Staphylococcus_phage	2.3e-166	100.0
WP_106459809.1\|2832092_2832725_+	MBL fold metallo-hydrolase	A0A1W6JPL3	Staphylococcus_phage	3.9e-85	97.5
WP_106459810.1\|2832725_2833196_+	single-stranded DNA-binding protein	S4V682	Staphylococcus_phage	1.3e-77	94.2
WP_106459811.1\|2833225_2834110_+	DnaD domain protein	I1W658	Staphylococcus_phage	4.7e-137	98.6
WP_000338527.1\|2834116_2834335_+	hypothetical protein	A0A1P8L6E4	Staphylococcus_phage	4.0e-37	98.6
WP_106459812.1\|2834343_2834748_+	RusA family crossover junction endodeoxyribonuclease	A0A075M042	Staphylococcus_phage	2.4e-72	99.3
WP_000101270.1\|2834760_2835129_+	hypothetical protein	A0A0E3XD52	Staphylococcus_phage	6.7e-53	100.0
WP_000131381.1\|2835132_2835375_+	hypothetical protein	A0A1P8L6E3	Staphylococcus_phage	3.0e-41	100.0
WP_001065046.1\|2835389_2835641_+	DUF1024 family protein	G4KNP4	Staphylococcus_phage	4.1e-38	96.4
WP_001061842.1\|2836262_2836769_+	hypothetical protein	M9NS45	Staphylococcus_phage	5.9e-92	100.0
WP_070046073.1\|2836805_2837093_+	DUF1381 domain-containing protein	Q4ZAB6	Staphylococcus_virus	8.4e-43	94.7
WP_070046072.1\|2837085_2837322_+	hypothetical protein	A0A0E3T8L8	Staphylococcus_phage	2.2e-33	92.3
WP_106459813.1\|2837305_2837701_+	hypothetical protein	A7TWI1	Staphylococcus_phage	9.1e-64	95.4
WP_000595265.1\|2837697_2837847_+	transcriptional activator RinB	A0A1W6JPZ2	Staphylococcus_phage	4.8e-18	100.0
WP_106459814.1\|2837846_2838047_+	DUF1514 domain-containing protein	D2JLD9	Staphylococcus_phage	5.3e-28	98.5
WP_000282752.1\|2838069_2838531_+	hypothetical protein	D2JLE0	Staphylococcus_phage	1.1e-68	100.0
WP_000406189.1\|2838645_2839098_+	nucleoside triphosphate pyrophosphohydrolase family protein	D2JLE1	Staphylococcus_phage	3.9e-79	98.7
WP_106459818.1\|2839113_2839458_+	HNH endonuclease	D2JLE2	Staphylococcus_phage	4.3e-62	95.6
WP_000919026.1\|2839587_2840055_+\|terminase	phage terminase small subunit P27 family	D2JLE3	Staphylococcus_phage	1.1e-81	100.0

Anti-CRISPR protein detection

Acr_ID: NZ_CP047794.1|WP_000499194.1|1349497_1349653_-|hypothetical-protein

Click the colored protein region to show detailed information

Acr ID

Acr position

Acr size

Homology with known anti

Neighbor HTH/AcRanker

Neighbor Aca

In prophage

Protospacer in prophage

NZ_CP047794.1|WP_000499194.1|1349497_1349653_-|hypothetical-protein

1349497_1349653_-

51 aa aa

1346786-1360979

yes

CRISPR ID	CRISPR type	Spacer info	Spacer location	Spacer length	Protospacer location	Mismatch
NZ_CP047794_13	Orphan	13.1\|2813861\|34\|NZ_CP047794\|CRISPRCasFinder	2813861-2813894	34	1359166-1359133	1

1. spacer 13.1|2813861|34|NZ_CP047794|CRISPRCasFinder matches to NZ_CP047794 position: 1359166-1359133, mismatch: 1

ccaacacagagaatttcgaaaagaaattctacaa	CRISPR spacer
ccaacaaagagaatttcgaaaagaaattctacaa	Protospacer
****** ***************************

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP047794

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CRISPR-Cas detection and classification

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

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