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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP047784 Staphylococcus aureus strain UP_1209 chromosome, complete genome 10 crisprs cas3,DEDDh,DinG,csa3,WYL 6 3 6 0

Results visualization

1. NZ_CP047784
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP047784_1 260000-260085 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP047784_2 620777-620864 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP047784_3 791715-791805 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP047784_4 798926-799012 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP047784_5 835059-835140 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP047784_6 884220-884306 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP047784_7 1103499-1103584 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP047784_8 1868155-1868287 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP047784_9 2104805-2104890 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP047784_10 2532858-2532939 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
NZ_CP047784_3 3.1|791748|25|NZ_CP047784|CRISPRCasFinder 791748-791772 25 NZ_CP047784.1 141617-141641 0 1.0
NZ_CP047784_3 3.1|791748|25|NZ_CP047784|CRISPRCasFinder 791748-791772 25 NZ_CP047784.1 141674-141698 0 1.0
NZ_CP047784_3 3.1|791748|25|NZ_CP047784|CRISPRCasFinder 791748-791772 25 NZ_CP047784.1 259936-259960 0 1.0
NZ_CP047784_3 3.1|791748|25|NZ_CP047784|CRISPRCasFinder 791748-791772 25 NZ_CP047784.1 620769-620793 0 1.0
NZ_CP047784_3 3.1|791748|25|NZ_CP047784|CRISPRCasFinder 791748-791772 25 NZ_CP047784.1 1311784-1311808 0 1.0
NZ_CP047784_3 3.1|791748|25|NZ_CP047784|CRISPRCasFinder 791748-791772 25 NZ_CP047784.1 2413990-2414014 0 1.0
NZ_CP047784_3 3.1|791748|25|NZ_CP047784|CRISPRCasFinder 791748-791772 25 NZ_CP047784.1 2532842-2532866 0 1.0
NZ_CP047784_3 3.1|791748|25|NZ_CP047784|CRISPRCasFinder 791748-791772 25 NZ_CP047784.1 743925-743949 0 1.0
NZ_CP047784_3 3.1|791748|25|NZ_CP047784|CRISPRCasFinder 791748-791772 25 NZ_CP047784.1 786311-786335 0 1.0
NZ_CP047784_3 3.1|791748|25|NZ_CP047784|CRISPRCasFinder 791748-791772 25 NZ_CP047784.1 835132-835156 0 1.0
NZ_CP047784_3 3.1|791748|25|NZ_CP047784|CRISPRCasFinder 791748-791772 25 NZ_CP047784.1 1002299-1002323 0 1.0
NZ_CP047784_3 3.1|791748|25|NZ_CP047784|CRISPRCasFinder 791748-791772 25 NZ_CP047784.1 1028932-1028956 0 1.0
NZ_CP047784_3 3.1|791748|25|NZ_CP047784|CRISPRCasFinder 791748-791772 25 NZ_CP047784.1 1579963-1579987 0 1.0
NZ_CP047784_3 3.1|791748|25|NZ_CP047784|CRISPRCasFinder 791748-791772 25 NZ_CP047784.1 1903738-1903762 0 1.0
NZ_CP047784_3 3.1|791748|25|NZ_CP047784|CRISPRCasFinder 791748-791772 25 NZ_CP047784.1 2201911-2201935 0 1.0
NZ_CP047784_10 10.1|2532882|34|NZ_CP047784|CRISPRCasFinder 2532882-2532915 34 NZ_CP047784.1 1311883-1311916 0 1.0
NZ_CP047784_2 2.1|620807|28|NZ_CP047784|CRISPRCasFinder 620807-620834 28 NZ_CP047784.1 1902354-1902381 1 0.964
NZ_CP047784_3 3.1|791748|25|NZ_CP047784|CRISPRCasFinder 791748-791772 25 NZ_CP047784.1 903833-903857 1 0.96
NZ_CP047784_3 3.1|791748|25|NZ_CP047784|CRISPRCasFinder 791748-791772 25 NZ_CP047784.1 1612449-1612473 1 0.96
NZ_CP047784_3 3.1|791748|25|NZ_CP047784|CRISPRCasFinder 791748-791772 25 NZ_CP047784.1 1612682-1612706 1 0.96
NZ_CP047784_4 4.1|798955|29|NZ_CP047784|CRISPRCasFinder 798955-798983 29 NZ_CP047784.1 141616-141644 1 0.966
NZ_CP047784_4 4.1|798955|29|NZ_CP047784|CRISPRCasFinder 798955-798983 29 NZ_CP047784.1 141673-141701 1 0.966
NZ_CP047784_4 4.1|798955|29|NZ_CP047784|CRISPRCasFinder 798955-798983 29 NZ_CP047784.1 259935-259963 1 0.966
NZ_CP047784_4 4.1|798955|29|NZ_CP047784|CRISPRCasFinder 798955-798983 29 NZ_CP047784.1 620768-620796 1 0.966
NZ_CP047784_4 4.1|798955|29|NZ_CP047784|CRISPRCasFinder 798955-798983 29 NZ_CP047784.1 743922-743950 1 0.966
NZ_CP047784_4 4.1|798955|29|NZ_CP047784|CRISPRCasFinder 798955-798983 29 NZ_CP047784.1 786308-786336 1 0.966
NZ_CP047784_4 4.1|798955|29|NZ_CP047784|CRISPRCasFinder 798955-798983 29 NZ_CP047784.1 835129-835157 1 0.966
NZ_CP047784_4 4.1|798955|29|NZ_CP047784|CRISPRCasFinder 798955-798983 29 NZ_CP047784.1 1002296-1002324 1 0.966
NZ_CP047784_4 4.1|798955|29|NZ_CP047784|CRISPRCasFinder 798955-798983 29 NZ_CP047784.1 1028929-1028957 1 0.966
NZ_CP047784_4 4.1|798955|29|NZ_CP047784|CRISPRCasFinder 798955-798983 29 NZ_CP047784.1 1311783-1311811 1 0.966
NZ_CP047784_4 4.1|798955|29|NZ_CP047784|CRISPRCasFinder 798955-798983 29 NZ_CP047784.1 1579960-1579988 1 0.966
NZ_CP047784_4 4.1|798955|29|NZ_CP047784|CRISPRCasFinder 798955-798983 29 NZ_CP047784.1 1903735-1903763 1 0.966
NZ_CP047784_4 4.1|798955|29|NZ_CP047784|CRISPRCasFinder 798955-798983 29 NZ_CP047784.1 2201908-2201936 1 0.966
NZ_CP047784_4 4.1|798955|29|NZ_CP047784|CRISPRCasFinder 798955-798983 29 NZ_CP047784.1 2413989-2414017 1 0.966
NZ_CP047784_4 4.1|798955|29|NZ_CP047784|CRISPRCasFinder 798955-798983 29 NZ_CP047784.1 2532841-2532869 1 0.966
NZ_CP047784_5 5.1|835083|34|NZ_CP047784|CRISPRCasFinder 835083-835116 34 NZ_CP047784.1 1311883-1311916 1 0.971
NZ_CP047784_7 7.1|1103529|26|NZ_CP047784|CRISPRCasFinder 1103529-1103554 26 NZ_CP047784.1 259974-259999 1 0.962
NZ_CP047784_4 4.1|798955|29|NZ_CP047784|CRISPRCasFinder 798955-798983 29 NZ_CP047784.1 835455-835483 2 0.931
NZ_CP047784_4 4.1|798955|29|NZ_CP047784|CRISPRCasFinder 798955-798983 29 NZ_CP047784.1 903830-903858 2 0.931
NZ_CP047784_4 4.1|798955|29|NZ_CP047784|CRISPRCasFinder 798955-798983 29 NZ_CP047784.1 1612446-1612474 2 0.931
NZ_CP047784_4 4.1|798955|29|NZ_CP047784|CRISPRCasFinder 798955-798983 29 NZ_CP047784.1 1612679-1612707 2 0.931
NZ_CP047784_4 4.1|798955|29|NZ_CP047784|CRISPRCasFinder 798955-798983 29 NZ_CP047784.1 1757208-1757236 2 0.931
NZ_CP047784_4 4.1|798955|29|NZ_CP047784|CRISPRCasFinder 798955-798983 29 NZ_CP047784.1 1913084-1913112 2 0.931
NZ_CP047784_7 7.1|1103529|26|NZ_CP047784|CRISPRCasFinder 1103529-1103554 26 NZ_CP047784.1 754624-754649 2 0.923
NZ_CP047784_7 7.1|1103529|26|NZ_CP047784|CRISPRCasFinder 1103529-1103554 26 NZ_CP047784.1 884195-884220 2 0.923
NZ_CP047784_7 7.1|1103529|26|NZ_CP047784|CRISPRCasFinder 1103529-1103554 26 NZ_CP047784.1 2647356-2647381 2 0.923
NZ_CP047784_10 10.1|2532882|34|NZ_CP047784|CRISPRCasFinder 2532882-2532915 34 NZ_CP047784.1 141714-141747 2 0.941
NZ_CP047784_10 10.1|2532882|34|NZ_CP047784|CRISPRCasFinder 2532882-2532915 34 NZ_CP047784.1 1002249-1002282 2 0.941

1. spacer 3.1|791748|25|NZ_CP047784|CRISPRCasFinder matches to position: 141617-141641, mismatch: 0, identity: 1.0

cctgtagaatttcttttcgaaattc	CRISPR spacer
cctgtagaatttcttttcgaaattc	Protospacer
*************************

2. spacer 3.1|791748|25|NZ_CP047784|CRISPRCasFinder matches to position: 141674-141698, mismatch: 0, identity: 1.0

cctgtagaatttcttttcgaaattc	CRISPR spacer
cctgtagaatttcttttcgaaattc	Protospacer
*************************

3. spacer 3.1|791748|25|NZ_CP047784|CRISPRCasFinder matches to position: 259936-259960, mismatch: 0, identity: 1.0

cctgtagaatttcttttcgaaattc	CRISPR spacer
cctgtagaatttcttttcgaaattc	Protospacer
*************************

4. spacer 3.1|791748|25|NZ_CP047784|CRISPRCasFinder matches to position: 620769-620793, mismatch: 0, identity: 1.0

cctgtagaatttcttttcgaaattc	CRISPR spacer
cctgtagaatttcttttcgaaattc	Protospacer
*************************

5. spacer 3.1|791748|25|NZ_CP047784|CRISPRCasFinder matches to position: 1311784-1311808, mismatch: 0, identity: 1.0

cctgtagaatttcttttcgaaattc	CRISPR spacer
cctgtagaatttcttttcgaaattc	Protospacer
*************************

6. spacer 3.1|791748|25|NZ_CP047784|CRISPRCasFinder matches to position: 2413990-2414014, mismatch: 0, identity: 1.0

cctgtagaatttcttttcgaaattc	CRISPR spacer
cctgtagaatttcttttcgaaattc	Protospacer
*************************

7. spacer 3.1|791748|25|NZ_CP047784|CRISPRCasFinder matches to position: 2532842-2532866, mismatch: 0, identity: 1.0

cctgtagaatttcttttcgaaattc	CRISPR spacer
cctgtagaatttcttttcgaaattc	Protospacer
*************************

8. spacer 3.1|791748|25|NZ_CP047784|CRISPRCasFinder matches to position: 743925-743949, mismatch: 0, identity: 1.0

cctgtagaatttcttttcgaaattc	CRISPR spacer
cctgtagaatttcttttcgaaattc	Protospacer
*************************

9. spacer 3.1|791748|25|NZ_CP047784|CRISPRCasFinder matches to position: 786311-786335, mismatch: 0, identity: 1.0

cctgtagaatttcttttcgaaattc	CRISPR spacer
cctgtagaatttcttttcgaaattc	Protospacer
*************************

10. spacer 3.1|791748|25|NZ_CP047784|CRISPRCasFinder matches to position: 835132-835156, mismatch: 0, identity: 1.0

cctgtagaatttcttttcgaaattc	CRISPR spacer
cctgtagaatttcttttcgaaattc	Protospacer
*************************

11. spacer 3.1|791748|25|NZ_CP047784|CRISPRCasFinder matches to position: 1002299-1002323, mismatch: 0, identity: 1.0

cctgtagaatttcttttcgaaattc	CRISPR spacer
cctgtagaatttcttttcgaaattc	Protospacer
*************************

12. spacer 3.1|791748|25|NZ_CP047784|CRISPRCasFinder matches to position: 1028932-1028956, mismatch: 0, identity: 1.0

cctgtagaatttcttttcgaaattc	CRISPR spacer
cctgtagaatttcttttcgaaattc	Protospacer
*************************

13. spacer 3.1|791748|25|NZ_CP047784|CRISPRCasFinder matches to position: 1579963-1579987, mismatch: 0, identity: 1.0

cctgtagaatttcttttcgaaattc	CRISPR spacer
cctgtagaatttcttttcgaaattc	Protospacer
*************************

14. spacer 3.1|791748|25|NZ_CP047784|CRISPRCasFinder matches to position: 1903738-1903762, mismatch: 0, identity: 1.0

cctgtagaatttcttttcgaaattc	CRISPR spacer
cctgtagaatttcttttcgaaattc	Protospacer
*************************

15. spacer 3.1|791748|25|NZ_CP047784|CRISPRCasFinder matches to position: 2201911-2201935, mismatch: 0, identity: 1.0

cctgtagaatttcttttcgaaattc	CRISPR spacer
cctgtagaatttcttttcgaaattc	Protospacer
*************************

16. spacer 10.1|2532882|34|NZ_CP047784|CRISPRCasFinder matches to position: 1311883-1311916, mismatch: 0, identity: 1.0

atgggccccaacaaagagaaattggattcccaat	CRISPR spacer
atgggccccaacaaagagaaattggattcccaat	Protospacer
**********************************

17. spacer 2.1|620807|28|NZ_CP047784|CRISPRCasFinder matches to position: 1902354-1902381, mismatch: 1, identity: 0.964

ggtgtgggccccaacacagagaatttca	CRISPR spacer
ggtgtgggccccaacaaagagaatttca	Protospacer
**************** ***********

18. spacer 3.1|791748|25|NZ_CP047784|CRISPRCasFinder matches to position: 903833-903857, mismatch: 1, identity: 0.96

cctgtagaatttcttttcgaaattc	CRISPR spacer
cctgtagaatttcttttagaaattc	Protospacer
***************** *******

19. spacer 3.1|791748|25|NZ_CP047784|CRISPRCasFinder matches to position: 1612449-1612473, mismatch: 1, identity: 0.96

cctgtagaatttcttttcgaaattc	CRISPR spacer
cctgtagaatttctttacgaaattc	Protospacer
**************** ********

20. spacer 3.1|791748|25|NZ_CP047784|CRISPRCasFinder matches to position: 1612682-1612706, mismatch: 1, identity: 0.96

cctgtagaatttcttttcgaaattc	CRISPR spacer
cctgtagaatttctttacgaaattc	Protospacer
**************** ********

21. spacer 4.1|798955|29|NZ_CP047784|CRISPRCasFinder matches to position: 141616-141644, mismatch: 1, identity: 0.966

ttgcctgtagaatttcatttcgaaattct	CRISPR spacer
ttgcctgtagaatttcttttcgaaattct	Protospacer
**************** ************

22. spacer 4.1|798955|29|NZ_CP047784|CRISPRCasFinder matches to position: 141673-141701, mismatch: 1, identity: 0.966

ttgcctgtagaatttcatttcgaaattct	CRISPR spacer
ttgcctgtagaatttcttttcgaaattct	Protospacer
**************** ************

23. spacer 4.1|798955|29|NZ_CP047784|CRISPRCasFinder matches to position: 259935-259963, mismatch: 1, identity: 0.966

ttgcctgtagaatttcatttcgaaattct	CRISPR spacer
ttgcctgtagaatttcttttcgaaattct	Protospacer
**************** ************

24. spacer 4.1|798955|29|NZ_CP047784|CRISPRCasFinder matches to position: 620768-620796, mismatch: 1, identity: 0.966

ttgcctgtagaatttcatttcgaaattct	CRISPR spacer
ttgcctgtagaatttcttttcgaaattct	Protospacer
**************** ************

25. spacer 4.1|798955|29|NZ_CP047784|CRISPRCasFinder matches to position: 743922-743950, mismatch: 1, identity: 0.966

ttgcctgtagaatttcatttcgaaattct	CRISPR spacer
ttgcctgtagaatttcttttcgaaattct	Protospacer
**************** ************

26. spacer 4.1|798955|29|NZ_CP047784|CRISPRCasFinder matches to position: 786308-786336, mismatch: 1, identity: 0.966

ttgcctgtagaatttcatttcgaaattct	CRISPR spacer
ttgcctgtagaatttcttttcgaaattct	Protospacer
**************** ************

27. spacer 4.1|798955|29|NZ_CP047784|CRISPRCasFinder matches to position: 835129-835157, mismatch: 1, identity: 0.966

ttgcctgtagaatttcatttcgaaattct	CRISPR spacer
ttgcctgtagaatttcttttcgaaattct	Protospacer
**************** ************

28. spacer 4.1|798955|29|NZ_CP047784|CRISPRCasFinder matches to position: 1002296-1002324, mismatch: 1, identity: 0.966

ttgcctgtagaatttcatttcgaaattct	CRISPR spacer
ttgcctgtagaatttcttttcgaaattct	Protospacer
**************** ************

29. spacer 4.1|798955|29|NZ_CP047784|CRISPRCasFinder matches to position: 1028929-1028957, mismatch: 1, identity: 0.966

ttgcctgtagaatttcatttcgaaattct	CRISPR spacer
ttgcctgtagaatttcttttcgaaattct	Protospacer
**************** ************

30. spacer 4.1|798955|29|NZ_CP047784|CRISPRCasFinder matches to position: 1311783-1311811, mismatch: 1, identity: 0.966

ttgcctgtagaatttcatttcgaaattct	CRISPR spacer
ttgcctgtagaatttcttttcgaaattct	Protospacer
**************** ************

31. spacer 4.1|798955|29|NZ_CP047784|CRISPRCasFinder matches to position: 1579960-1579988, mismatch: 1, identity: 0.966

ttgcctgtagaatttcatttcgaaattct	CRISPR spacer
ttgcctgtagaatttcttttcgaaattct	Protospacer
**************** ************

32. spacer 4.1|798955|29|NZ_CP047784|CRISPRCasFinder matches to position: 1903735-1903763, mismatch: 1, identity: 0.966

ttgcctgtagaatttcatttcgaaattct	CRISPR spacer
ttgcctgtagaatttcttttcgaaattct	Protospacer
**************** ************

33. spacer 4.1|798955|29|NZ_CP047784|CRISPRCasFinder matches to position: 2201908-2201936, mismatch: 1, identity: 0.966

ttgcctgtagaatttcatttcgaaattct	CRISPR spacer
ttgcctgtagaatttcttttcgaaattct	Protospacer
**************** ************

34. spacer 4.1|798955|29|NZ_CP047784|CRISPRCasFinder matches to position: 2413989-2414017, mismatch: 1, identity: 0.966

ttgcctgtagaatttcatttcgaaattct	CRISPR spacer
ttgcctgtagaatttcttttcgaaattct	Protospacer
**************** ************

35. spacer 4.1|798955|29|NZ_CP047784|CRISPRCasFinder matches to position: 2532841-2532869, mismatch: 1, identity: 0.966

ttgcctgtagaatttcatttcgaaattct	CRISPR spacer
ttgcctgtagaatttcttttcgaaattct	Protospacer
**************** ************

36. spacer 5.1|835083|34|NZ_CP047784|CRISPRCasFinder matches to position: 1311883-1311916, mismatch: 1, identity: 0.971

attgagaatccaatttctctttgttggggcccat	CRISPR spacer
attgggaatccaatttctctttgttggggcccat	Protospacer
****.*****************************

37. spacer 7.1|1103529|26|NZ_CP047784|CRISPRCasFinder matches to position: 259974-259999, mismatch: 1, identity: 0.962

cggggccccaacatagaagctggtgg	CRISPR spacer
cggggccccaacatagaagctggcgg	Protospacer
***********************.**

38. spacer 4.1|798955|29|NZ_CP047784|CRISPRCasFinder matches to position: 835455-835483, mismatch: 2, identity: 0.931

ttgcctgtagaatttcatttcgaaattct	CRISPR spacer
ttgtctgtagaatttcttttcgaaattct	Protospacer
***.************ ************

39. spacer 4.1|798955|29|NZ_CP047784|CRISPRCasFinder matches to position: 903830-903858, mismatch: 2, identity: 0.931

ttgcctgtagaatttcatttcgaaattct	CRISPR spacer
ttgcctgtagaatttcttttagaaattct	Protospacer
**************** *** ********

40. spacer 4.1|798955|29|NZ_CP047784|CRISPRCasFinder matches to position: 1612446-1612474, mismatch: 2, identity: 0.931

ttgcctgtagaatttcatttcgaaattct	CRISPR spacer
ttgcctgtagaatttctttacgaaattct	Protospacer
**************** ** *********

41. spacer 4.1|798955|29|NZ_CP047784|CRISPRCasFinder matches to position: 1612679-1612707, mismatch: 2, identity: 0.931

ttgcctgtagaatttcatttcgaaattct	CRISPR spacer
ttgcctgtagaatttctttacgaaattct	Protospacer
**************** ** *********

42. spacer 4.1|798955|29|NZ_CP047784|CRISPRCasFinder matches to position: 1757208-1757236, mismatch: 2, identity: 0.931

ttgcctgtagaatttcatttcgaaattct	CRISPR spacer
ttgtctgtagaatttcttttcgaaattct	Protospacer
***.************ ************

43. spacer 4.1|798955|29|NZ_CP047784|CRISPRCasFinder matches to position: 1913084-1913112, mismatch: 2, identity: 0.931

ttgcctgtagaatttcatttcgaaattct	CRISPR spacer
ttgtctgtagaatttcctttcgaaattct	Protospacer
***.************ ************

44. spacer 7.1|1103529|26|NZ_CP047784|CRISPRCasFinder matches to position: 754624-754649, mismatch: 2, identity: 0.923

cggggccccaacatagaagctggtgg	CRISPR spacer
cggggccccaacatagaagcaggcgg	Protospacer
******************** **.**

45. spacer 7.1|1103529|26|NZ_CP047784|CRISPRCasFinder matches to position: 884195-884220, mismatch: 2, identity: 0.923

cggggccccaacatagaagctggtgg	CRISPR spacer
cggggccccaacacagaggctggtgg	Protospacer
*************.***.********

46. spacer 7.1|1103529|26|NZ_CP047784|CRISPRCasFinder matches to position: 2647356-2647381, mismatch: 2, identity: 0.923

cggggccccaacatagaagctggtgg	CRISPR spacer
cggggccccaacaaagaagctggcgg	Protospacer
************* *********.**

47. spacer 10.1|2532882|34|NZ_CP047784|CRISPRCasFinder matches to position: 141714-141747, mismatch: 2, identity: 0.941

atgggccccaacaaagagaaattggattcccaat	CRISPR spacer
atgggccccaacaaaaaggaattggattcccaat	Protospacer
***************.**.***************

48. spacer 10.1|2532882|34|NZ_CP047784|CRISPRCasFinder matches to position: 1002249-1002282, mismatch: 2, identity: 0.941

atgggccccaacaaagagaaattggattcccaat	CRISPR spacer
atgggccccaacaaagaggaattggatttccaat	Protospacer
******************.*********.*****

CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_CP047784_1 1.1|260030|26|NZ_CP047784|CRISPRCasFinder 260030-260055 26 NZ_CP009292 Novosphingobium pentaromativorans US6-1 plasmid pLA3, complete sequence 354197-354222 3 0.885
NZ_CP047784_1 1.1|260030|26|NZ_CP047784|CRISPRCasFinder 260030-260055 26 NZ_CP022541 Antarctobacter heliothermus strain SMS3 plasmid pSMS3-1, complete sequence 333735-333760 5 0.808
NZ_CP047784_4 4.1|798955|29|NZ_CP047784|CRISPRCasFinder 798955-798983 29 NZ_LT984809 Cupriavidus taiwanensis isolate Cupriavidus taiwanensis STM 8555 plasmid I, complete sequence 102953-102981 6 0.793
NZ_CP047784_4 4.1|798955|29|NZ_CP047784|CRISPRCasFinder 798955-798983 29 NZ_CP045275 Bacillus megaterium strain FDU301 plasmid pFDU301C, complete sequence 4578-4606 7 0.759
NZ_CP047784_4 4.1|798955|29|NZ_CP047784|CRISPRCasFinder 798955-798983 29 MN655998 Escherichia phage E26, complete genome 123445-123473 8 0.724
NZ_CP047784_4 4.1|798955|29|NZ_CP047784|CRISPRCasFinder 798955-798983 29 MH560358 Escherichia virus KFS-EC, complete genome 67718-67746 8 0.724
NZ_CP047784_4 4.1|798955|29|NZ_CP047784|CRISPRCasFinder 798955-798983 29 MK573636 Escherichia phage vB_EcoM_PHB13, partial genome 111150-111178 8 0.724
NZ_CP047784_4 4.1|798955|29|NZ_CP047784|CRISPRCasFinder 798955-798983 29 MT764208 Escherichia phage JEP8, complete genome 37770-37798 8 0.724
NZ_CP047784_4 4.1|798955|29|NZ_CP047784|CRISPRCasFinder 798955-798983 29 MT478991 Escherichia phage vB_EcoM_011D4, complete genome 74685-74713 8 0.724
NZ_CP047784_4 4.1|798955|29|NZ_CP047784|CRISPRCasFinder 798955-798983 29 MK327941 Escherichia phage vB_EcoM_G37-3, complete genome 125624-125652 8 0.724
NZ_CP047784_4 4.1|798955|29|NZ_CP047784|CRISPRCasFinder 798955-798983 29 NC_009821 Enterobacteria phage Phi1, complete genome 123689-123717 8 0.724
NZ_CP047784_4 4.1|798955|29|NZ_CP047784|CRISPRCasFinder 798955-798983 29 MF327006 Shigella phage Sf20, complete genome 59751-59779 8 0.724
NZ_CP047784_4 4.1|798955|29|NZ_CP047784|CRISPRCasFinder 798955-798983 29 MK327932 Escherichia phage vB_EcoM_G2248, complete genome 130440-130468 8 0.724
NZ_CP047784_4 4.1|798955|29|NZ_CP047784|CRISPRCasFinder 798955-798983 29 NC_025425 Enterobacteria phage GEC-3S complete genome 123230-123258 8 0.724
NZ_CP047784_4 4.1|798955|29|NZ_CP047784|CRISPRCasFinder 798955-798983 29 MN709127 Escherichia virus Ec_Makalu_002, complete genome 124447-124475 8 0.724
NZ_CP047784_4 4.1|798955|29|NZ_CP047784|CRISPRCasFinder 798955-798983 29 MN732896 Elizabethkingia phage TCUEAP1, complete genome 46961-46989 8 0.724
NZ_CP047784_4 4.1|798955|29|NZ_CP047784|CRISPRCasFinder 798955-798983 29 MK327947 Escherichia phage vB_EcoM_G5211, complete genome 123821-123849 8 0.724
NZ_CP047784_4 4.1|798955|29|NZ_CP047784|CRISPRCasFinder 798955-798983 29 NC_041936 Escherichia phage ECD7, complete genome 126064-126092 8 0.724
NZ_CP047784_4 4.1|798955|29|NZ_CP047784|CRISPRCasFinder 798955-798983 29 AY343333 Enterobacteria phage RB49, complete genome 123682-123710 8 0.724
NZ_CP047784_4 4.1|798955|29|NZ_CP047784|CRISPRCasFinder 798955-798983 29 MK327935 Escherichia phage vB_EcoM_G2494, complete genome 126619-126647 8 0.724
NZ_CP047784_4 4.1|798955|29|NZ_CP047784|CRISPRCasFinder 798955-798983 29 MK962753 Shigella phage JK32, complete genome 136063-136091 8 0.724
NZ_CP047784_4 4.1|798955|29|NZ_CP047784|CRISPRCasFinder 798955-798983 29 NC_012740 Enterobacteria phage JSE, complete genome 127422-127450 8 0.724
NZ_CP047784_4 4.1|798955|29|NZ_CP047784|CRISPRCasFinder 798955-798983 29 MN850574 Escherichia phage kaaroe, complete genome 146936-146964 8 0.724
NZ_CP047784_4 4.1|798955|29|NZ_CP047784|CRISPRCasFinder 798955-798983 29 MN850615 Escherichia phage kvi, complete genome 60987-61015 8 0.724
NZ_CP047784_4 4.1|798955|29|NZ_CP047784|CRISPRCasFinder 798955-798983 29 MN894885 Escherichia virus Ec_Makalu_001, complete genome 122754-122782 8 0.724
NZ_CP047784_4 4.1|798955|29|NZ_CP047784|CRISPRCasFinder 798955-798983 29 MN882349 Escherichia virus Ec_Makalu_003, complete genome 123140-123168 8 0.724
NZ_CP047784_9 9.1|2104831|34|NZ_CP047784|CRISPRCasFinder 2104831-2104864 34 JN882286 Cronobacter phage vB_CsaP_GAP52, complete genome 23034-23067 8 0.765
NZ_CP047784_9 9.1|2104831|34|NZ_CP047784|CRISPRCasFinder 2104831-2104864 34 CP030544 Staphylococcus aureus strain ER04166.3 plasmid unnamed2, complete sequence 7567-7600 8 0.765

1. spacer 1.1|260030|26|NZ_CP047784|CRISPRCasFinder matches to NZ_CP009292 (Novosphingobium pentaromativorans US6-1 plasmid pLA3, complete sequence) position: , mismatch: 3, identity: 0.885

ctgggccccaacacagaagctggcga	CRISPR spacer
ctgggcgccaacaccgaagctggcaa	Protospacer
****** ******* *********.*

2. spacer 1.1|260030|26|NZ_CP047784|CRISPRCasFinder matches to NZ_CP022541 (Antarctobacter heliothermus strain SMS3 plasmid pSMS3-1, complete sequence) position: , mismatch: 5, identity: 0.808

ctgggccccaacacagaagctggcga	CRISPR spacer
taaggcctcaacacagaagctggcgt	Protospacer
. .****.***************** 

3. spacer 4.1|798955|29|NZ_CP047784|CRISPRCasFinder matches to NZ_LT984809 (Cupriavidus taiwanensis isolate Cupriavidus taiwanensis STM 8555 plasmid I, complete sequence) position: , mismatch: 6, identity: 0.793

ttgcctgtagaatttcatttcgaaattct	CRISPR spacer
tccactgcagaatttcattttgaaatttt	Protospacer
*.  ***.************.******.*

4. spacer 4.1|798955|29|NZ_CP047784|CRISPRCasFinder matches to NZ_CP045275 (Bacillus megaterium strain FDU301 plasmid pFDU301C, complete sequence) position: , mismatch: 7, identity: 0.759

ttgcctgtagaatttcatttcgaaattct	CRISPR spacer
ttgcctctagaatttcattacgagctcta	Protospacer
****** ************ ***. *.. 

5. spacer 4.1|798955|29|NZ_CP047784|CRISPRCasFinder matches to MN655998 (Escherichia phage E26, complete genome) position: , mismatch: 8, identity: 0.724

ttgcctgtagaatttcatttcgaaattct	CRISPR spacer
cagccagtagaattttatttcgaaaagta	Protospacer
. *** *********.*********  . 

6. spacer 4.1|798955|29|NZ_CP047784|CRISPRCasFinder matches to MH560358 (Escherichia virus KFS-EC, complete genome) position: , mismatch: 8, identity: 0.724

ttgcctgtagaatttcatttcgaaattct	CRISPR spacer
cagccagtagaattttatttcgaaaagta	Protospacer
. *** *********.*********  . 

7. spacer 4.1|798955|29|NZ_CP047784|CRISPRCasFinder matches to MK573636 (Escherichia phage vB_EcoM_PHB13, partial genome) position: , mismatch: 8, identity: 0.724

ttgcctgtagaatttcatttcgaaattct	CRISPR spacer
cagccagtagaattttatttcgaaaagta	Protospacer
. *** *********.*********  . 

8. spacer 4.1|798955|29|NZ_CP047784|CRISPRCasFinder matches to MT764208 (Escherichia phage JEP8, complete genome) position: , mismatch: 8, identity: 0.724

ttgcctgtagaatttcatttcgaaattct	CRISPR spacer
cagccagtagaattttatttcgaaaagta	Protospacer
. *** *********.*********  . 

9. spacer 4.1|798955|29|NZ_CP047784|CRISPRCasFinder matches to MT478991 (Escherichia phage vB_EcoM_011D4, complete genome) position: , mismatch: 8, identity: 0.724

ttgcctgtagaatttcatttcgaaattct	CRISPR spacer
cagccagtagaattttatttcgaaaagta	Protospacer
. *** *********.*********  . 

10. spacer 4.1|798955|29|NZ_CP047784|CRISPRCasFinder matches to MK327941 (Escherichia phage vB_EcoM_G37-3, complete genome) position: , mismatch: 8, identity: 0.724

ttgcctgtagaatttcatttcgaaattct	CRISPR spacer
cagccagtagaattttatttcgaaaagta	Protospacer
. *** *********.*********  . 

11. spacer 4.1|798955|29|NZ_CP047784|CRISPRCasFinder matches to NC_009821 (Enterobacteria phage Phi1, complete genome) position: , mismatch: 8, identity: 0.724

ttgcctgtagaatttcatttcgaaattct	CRISPR spacer
cagccagtagaattttatttcgaaaagta	Protospacer
. *** *********.*********  . 

12. spacer 4.1|798955|29|NZ_CP047784|CRISPRCasFinder matches to MF327006 (Shigella phage Sf20, complete genome) position: , mismatch: 8, identity: 0.724

ttgcctgtagaatttcatttcgaaattct	CRISPR spacer
cagccagtagaattttatttcgaaaagta	Protospacer
. *** *********.*********  . 

13. spacer 4.1|798955|29|NZ_CP047784|CRISPRCasFinder matches to MK327932 (Escherichia phage vB_EcoM_G2248, complete genome) position: , mismatch: 8, identity: 0.724

ttgcctgtagaatttcatttcgaaattct	CRISPR spacer
cagccagtagaattttatttcgaaaagta	Protospacer
. *** *********.*********  . 

14. spacer 4.1|798955|29|NZ_CP047784|CRISPRCasFinder matches to NC_025425 (Enterobacteria phage GEC-3S complete genome) position: , mismatch: 8, identity: 0.724

ttgcctgtagaatttcatttcgaaattct	CRISPR spacer
cagccagtagaattttatttcgaaaagta	Protospacer
. *** *********.*********  . 

15. spacer 4.1|798955|29|NZ_CP047784|CRISPRCasFinder matches to MN709127 (Escherichia virus Ec_Makalu_002, complete genome) position: , mismatch: 8, identity: 0.724

ttgcctgtagaatttcatttcgaaattct	CRISPR spacer
cagccagtagaattttatttcgaaaagta	Protospacer
. *** *********.*********  . 

16. spacer 4.1|798955|29|NZ_CP047784|CRISPRCasFinder matches to MN732896 (Elizabethkingia phage TCUEAP1, complete genome) position: , mismatch: 8, identity: 0.724

ttgcctgtagaatttcatttcgaaattct	CRISPR spacer
caggtggtataatttcatttcgaaattga	Protospacer
. * . *** *****************  

17. spacer 4.1|798955|29|NZ_CP047784|CRISPRCasFinder matches to MK327947 (Escherichia phage vB_EcoM_G5211, complete genome) position: , mismatch: 8, identity: 0.724

ttgcctgtagaatttcatttcgaaattct	CRISPR spacer
cagccagtagaattttatttcgaaaagta	Protospacer
. *** *********.*********  . 

18. spacer 4.1|798955|29|NZ_CP047784|CRISPRCasFinder matches to NC_041936 (Escherichia phage ECD7, complete genome) position: , mismatch: 8, identity: 0.724

ttgcctgtagaatttcatttcgaaattct	CRISPR spacer
cagccagtagaattttatttcgaaaagta	Protospacer
. *** *********.*********  . 

19. spacer 4.1|798955|29|NZ_CP047784|CRISPRCasFinder matches to AY343333 (Enterobacteria phage RB49, complete genome) position: , mismatch: 8, identity: 0.724

ttgcctgtagaatttcatttcgaaattct	CRISPR spacer
cagccagtagaattttatttcgaaaagta	Protospacer
. *** *********.*********  . 

20. spacer 4.1|798955|29|NZ_CP047784|CRISPRCasFinder matches to MK327935 (Escherichia phage vB_EcoM_G2494, complete genome) position: , mismatch: 8, identity: 0.724

ttgcctgtagaatttcatttcgaaattct	CRISPR spacer
cagccagtagaattttatttcgaaaagta	Protospacer
. *** *********.*********  . 

21. spacer 4.1|798955|29|NZ_CP047784|CRISPRCasFinder matches to MK962753 (Shigella phage JK32, complete genome) position: , mismatch: 8, identity: 0.724

ttgcctgtagaatttcatttcgaaattct	CRISPR spacer
cagccagtagaattttatttcgaaaagta	Protospacer
. *** *********.*********  . 

22. spacer 4.1|798955|29|NZ_CP047784|CRISPRCasFinder matches to NC_012740 (Enterobacteria phage JSE, complete genome) position: , mismatch: 8, identity: 0.724

ttgcctgtagaatttcatttcgaaattct	CRISPR spacer
cagccagtagaattttatttcgaaaagta	Protospacer
. *** *********.*********  . 

23. spacer 4.1|798955|29|NZ_CP047784|CRISPRCasFinder matches to MN850574 (Escherichia phage kaaroe, complete genome) position: , mismatch: 8, identity: 0.724

ttgcctgtagaatttcatttcgaaattct	CRISPR spacer
cagccagtagaattttatttcgaaaagta	Protospacer
. *** *********.*********  . 

24. spacer 4.1|798955|29|NZ_CP047784|CRISPRCasFinder matches to MN850615 (Escherichia phage kvi, complete genome) position: , mismatch: 8, identity: 0.724

ttgcctgtagaatttcatttcgaaattct	CRISPR spacer
cagccagtagaattttatttcgaaaagta	Protospacer
. *** *********.*********  . 

25. spacer 4.1|798955|29|NZ_CP047784|CRISPRCasFinder matches to MN894885 (Escherichia virus Ec_Makalu_001, complete genome) position: , mismatch: 8, identity: 0.724

ttgcctgtagaatttcatttcgaaattct	CRISPR spacer
cagccagtagaattttatttcgaaaagta	Protospacer
. *** *********.*********  . 

26. spacer 4.1|798955|29|NZ_CP047784|CRISPRCasFinder matches to MN882349 (Escherichia virus Ec_Makalu_003, complete genome) position: , mismatch: 8, identity: 0.724

ttgcctgtagaatttcatttcgaaattct	CRISPR spacer
cagccagtagaattttatttcgaaaagta	Protospacer
. *** *********.*********  . 

27. spacer 9.1|2104831|34|NZ_CP047784|CRISPRCasFinder matches to JN882286 (Cronobacter phage vB_CsaP_GAP52, complete genome) position: , mismatch: 8, identity: 0.765

ttgcatatctttagctttattgtttgcaactggg	CRISPR spacer
ttgcatatctttagctttatagcttttatatgct	Protospacer
******************** *.** .*  **  

28. spacer 9.1|2104831|34|NZ_CP047784|CRISPRCasFinder matches to CP030544 (Staphylococcus aureus strain ER04166.3 plasmid unnamed2, complete sequence) position: , mismatch: 8, identity: 0.765

ttgcatatctttagctttattgtttgcaactggg	CRISPR spacer
ttgaataactttagctttattgttataaacagta	Protospacer
*** *** ****************   *** * .

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 723008 : 730829 10 Hokovirus(16.67%) NA NA
DBSCAN-SWA_2 742795 : 757726 13 uncultured_Caudovirales_phage(50.0%) NA NA
DBSCAN-SWA_3 1003800 : 1012273 9 Synechococcus_phage(33.33%) NA NA
DBSCAN-SWA_4 1551560 : 1559890 7 Staphylococcus_phage(16.67%) tRNA NA
DBSCAN-SWA_5 1627781 : 1636824 7 uncultured_Mediterranean_phage(50.0%) tRNA NA
DBSCAN-SWA_6 1762132 : 1833459 68 Staphylococcus_phage(90.57%) transposase,protease,tRNA NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage