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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP047698 Pseudomonas knackmussii strain N1-2 chromosome, complete genome 1 crisprs csa3,DEDDh,DinG,RT,cas3 0 1 10 0

Results visualization

1. NZ_CP047698
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP047698_1 1267145-1267228 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_CP047698_1 1.1|1267171|32|NZ_CP047698|CRISPRCasFinder 1267171-1267202 32 NZ_CP034351 Streptomyces sp. W1SF4 plasmid p1, complete sequence 309457-309488 9 0.719
NZ_CP047698_1 1.1|1267171|32|NZ_CP047698|CRISPRCasFinder 1267171-1267202 32 NZ_CP024428 Paracoccus yeei strain TT13 plasmid pTT13-6, complete sequence 21641-21672 10 0.688

1. spacer 1.1|1267171|32|NZ_CP047698|CRISPRCasFinder matches to NZ_CP034351 (Streptomyces sp. W1SF4 plasmid p1, complete sequence) position: , mismatch: 9, identity: 0.719

aatgacagggtgcgggaccgggtcgcgttctc	CRISPR spacer
acccggactgtgctggaccgggtcgggttctc	Protospacer
* . . *  **** *********** ******

2. spacer 1.1|1267171|32|NZ_CP047698|CRISPRCasFinder matches to NZ_CP024428 (Paracoccus yeei strain TT13 plasmid pTT13-6, complete sequence) position: , mismatch: 10, identity: 0.688

aatgacagggtgcgggaccgggtcgcgttctc	CRISPR spacer
cgggacaaggggcgggaccgggtcgccgccgg	Protospacer
 . ****.** ***************  .*  

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 102798 : 135392 26 Bacillus_virus(20.0%) transposase,holin NA
DBSCAN-SWA_2 1309762 : 1317566 7 uncultured_Mediterranean_phage(16.67%) NA NA
DBSCAN-SWA_3 1847338 : 1894598 72 Pseudomonas_phage(39.13%) integrase,head,terminase attL 1848093:1848140|attR 1895261:1895308
DBSCAN-SWA_4 2026359 : 2086751 60 uncultured_Caudovirales_phage(23.08%) protease,integrase,tRNA,portal,head,terminase,capsid,holin attL 2045399:2045416|attR 2068524:2068541
DBSCAN-SWA_5 2098205 : 2105470 10 Burkholderia_phage(25.0%) NA NA
DBSCAN-SWA_6 2482616 : 2564488 87 uncultured_Caudovirales_phage(57.45%) integrase,transposase,plate,head,tail,holin attL 2490869:2490890|attR 2564677:2564698
DBSCAN-SWA_7 3592693 : 3603723 14 uncultured_Caudovirales_phage(87.5%) tRNA NA
DBSCAN-SWA_8 3608396 : 3617063 9 Orpheovirus(16.67%) protease,transposase,tRNA NA
DBSCAN-SWA_9 4392609 : 4402310 8 Micromonas_sp._RCC1109_virus(28.57%) NA NA
DBSCAN-SWA_10 4734887 : 4742880 10 uncultured_Caudovirales_phage(28.57%) NA NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage