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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP041970 Acinetobacter dispersus strain NCCP 16014 chromosome, complete genome 2 crisprs RT,DEDDh,csa3,cas3,WYL 0 1 3 0

Results visualization

1. NZ_CP041970
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP041970_1 1247752-1247849 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP041970_2 2408573-2408746 Orphan NA
3 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_CP041970_2 2.3|2408693|30|NZ_CP041970|CRISPRCasFinder 2408693-2408722 30 AP013557 Uncultured Mediterranean phage uvMED isolate uvMED-CGR-C28-MedDCM-OCT-S41-C64, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces 27638-27667 5 0.833
NZ_CP041970_2 2.3|2408693|30|NZ_CP041970|CRISPRCasFinder 2408693-2408722 30 AP014400 Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C28-MedDCM-OCT-S24-C124, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces 5630-5659 5 0.833
NZ_CP041970_2 2.3|2408693|30|NZ_CP041970|CRISPRCasFinder 2408693-2408722 30 AP013556 Uncultured Mediterranean phage uvMED isolate uvMED-CGR-C28-MedDCM-OCT-S32-C64, *** SEQUENCING IN PROGRESS ***, 6 ordered pieces 6804-6833 5 0.833
NZ_CP041970_2 2.3|2408693|30|NZ_CP041970|CRISPRCasFinder 2408693-2408722 30 NC_031245 Bacillus phage SP-15, complete genome 38481-38510 5 0.833
NZ_CP041970_2 2.3|2408693|30|NZ_CP041970|CRISPRCasFinder 2408693-2408722 30 MT774404 CrAssphage cr114_1, complete genome 48297-48326 6 0.8
NZ_CP041970_2 2.3|2408693|30|NZ_CP041970|CRISPRCasFinder 2408693-2408722 30 MT774400 CrAssphage cr4_1, complete genome 357-386 6 0.8
NZ_CP041970_2 2.3|2408693|30|NZ_CP041970|CRISPRCasFinder 2408693-2408722 30 MT774407 CrAssphage cr125_1, complete genome 60382-60411 6 0.8
NZ_CP041970_2 2.3|2408693|30|NZ_CP041970|CRISPRCasFinder 2408693-2408722 30 MF360958 Salicola phage SCTP-2, complete genome 76361-76390 7 0.767
NZ_CP041970_2 2.3|2408693|30|NZ_CP041970|CRISPRCasFinder 2408693-2408722 30 NC_010418 Clostridium botulinum A3 str. Loch Maree plasmid pCLK, complete sequence 198498-198527 8 0.733
NZ_CP041970_2 2.3|2408693|30|NZ_CP041970|CRISPRCasFinder 2408693-2408722 30 NZ_CP006909 Clostridium botulinum CDC_1436 plasmid pCBG, complete sequence 87309-87338 8 0.733

1. spacer 2.3|2408693|30|NZ_CP041970|CRISPRCasFinder matches to AP013557 (Uncultured Mediterranean phage uvMED isolate uvMED-CGR-C28-MedDCM-OCT-S41-C64, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces) position: , mismatch: 5, identity: 0.833

actactgctgcttctgaagctactactgct	CRISPR spacer
tgtgctgctgctactgaagctactgctgct	Protospacer
  *.******** ***********.*****

2. spacer 2.3|2408693|30|NZ_CP041970|CRISPRCasFinder matches to AP014400 (Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C28-MedDCM-OCT-S24-C124, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces) position: , mismatch: 5, identity: 0.833

actactgctgcttctgaagctactactgct	CRISPR spacer
tgtgctgctgctactgaagctactgctgct	Protospacer
  *.******** ***********.*****

3. spacer 2.3|2408693|30|NZ_CP041970|CRISPRCasFinder matches to AP013556 (Uncultured Mediterranean phage uvMED isolate uvMED-CGR-C28-MedDCM-OCT-S32-C64, *** SEQUENCING IN PROGRESS ***, 6 ordered pieces) position: , mismatch: 5, identity: 0.833

actactgctgcttctgaagctactactgct	CRISPR spacer
tgtgctgctgctactgaagctactgctgct	Protospacer
  *.******** ***********.*****

4. spacer 2.3|2408693|30|NZ_CP041970|CRISPRCasFinder matches to NC_031245 (Bacillus phage SP-15, complete genome) position: , mismatch: 5, identity: 0.833

actactgctgcttctgaagctactactgct	CRISPR spacer
actactgctgctactgaagctatggctact	Protospacer
************ *********. .**.**

5. spacer 2.3|2408693|30|NZ_CP041970|CRISPRCasFinder matches to MT774404 (CrAssphage cr114_1, complete genome) position: , mismatch: 6, identity: 0.8

actactgctgcttctgaagctactactgct	CRISPR spacer
attaaaactgctgctgaagctgctactgct	Protospacer
*.**  .***** ********.********

6. spacer 2.3|2408693|30|NZ_CP041970|CRISPRCasFinder matches to MT774400 (CrAssphage cr4_1, complete genome) position: , mismatch: 6, identity: 0.8

actactgctgcttctgaagctactactgct	CRISPR spacer
attaaaactgctgctgaagctgctactgct	Protospacer
*.**  .***** ********.********

7. spacer 2.3|2408693|30|NZ_CP041970|CRISPRCasFinder matches to MT774407 (CrAssphage cr125_1, complete genome) position: , mismatch: 6, identity: 0.8

actactgctgcttctgaagctactactgct	CRISPR spacer
attaaaactgctgctgaagctgctactgct	Protospacer
*.**  .***** ********.********

8. spacer 2.3|2408693|30|NZ_CP041970|CRISPRCasFinder matches to MF360958 (Salicola phage SCTP-2, complete genome) position: , mismatch: 7, identity: 0.767

actactgctgcttctgaagctactactgct	CRISPR spacer
ttaaaagctgcttttgaagctactactgat	Protospacer
 . *  *******.************** *

9. spacer 2.3|2408693|30|NZ_CP041970|CRISPRCasFinder matches to NC_010418 (Clostridium botulinum A3 str. Loch Maree plasmid pCLK, complete sequence) position: , mismatch: 8, identity: 0.733

actactgctgcttctgaagctactactgct	CRISPR spacer
ttagctgctgctgctgaagctactaaagca	Protospacer
 . .******** ************  ** 

10. spacer 2.3|2408693|30|NZ_CP041970|CRISPRCasFinder matches to NZ_CP006909 (Clostridium botulinum CDC_1436 plasmid pCBG, complete sequence) position: , mismatch: 8, identity: 0.733

actactgctgcttctgaagctactactgct	CRISPR spacer
ttagctgctgctgctgaagctactaaagca	Protospacer
 . .******** ************  ** 

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 363528 : 374329 10 Bacillus_phage(16.67%) NA NA
DBSCAN-SWA_2 856018 : 888509 47 Pseudomonas_phage(34.48%) integrase,head,tail,plate,transposase attL 859033:859049|attR 883048:883064
DBSCAN-SWA_3 3672584 : 3758618 98 uncultured_Caudovirales_phage(66.67%) holin,capsid,protease,integrase,terminase,head,tail,tRNA,plate,portal attL 3684996:3685013|attR 3702932:3702949
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage