Please click to download your results

Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP019428 Pseudomonas sp. R76 chromosome, complete genome 7 crisprs DEDDh,RT,DinG,csa3,cas3,WYL,PD-DExK 0 3 8 0
NZ_CP019429 Pseudomonas sp. R76 plasmid p76, complete sequence 0 crisprs NA 0 0 0 0

Results visualization

1. NZ_CP019428
Click the left colored region to show detailed information
CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP019428_1 1060299-1060464 Orphan NA
3 spacers

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information
CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP019428_2 1568940-1569042 Orphan NA
1 spacers

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information
CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP019428_3 1746619-1746721 Orphan NA
1 spacers

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information
CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP019428_4 2040731-2040813 Orphan NA
1 spacers

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information
CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP019428_5 3082484-3082578 Orphan NA
1 spacers

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information
CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP019428_6 4153574-4153654 Orphan NA
1 spacers

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information
CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP019428_7 4669900-4670180 Orphan NA
4 spacers

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_CP019428_6 6.1|4153598|33|NZ_CP019428|CRISPRCasFinder 4153598-4153630 33 NC_011044 Mycobacterium phage Nigel, complete genome 65755-65787 6 0.818
NZ_CP019428_4 4.1|2040757|31|NZ_CP019428|CRISPRCasFinder 2040757-2040787 31 NZ_CP023068 Ensifer sojae CCBAU 05684 plasmid pSJ05684b, complete sequence 1346333-1346363 7 0.774
NZ_CP019428_4 4.1|2040757|31|NZ_CP019428|CRISPRCasFinder 2040757-2040787 31 MN585979 Mycobacterium phage Yecey3, complete genome 33095-33125 7 0.774
NZ_CP019428_4 4.1|2040757|31|NZ_CP019428|CRISPRCasFinder 2040757-2040787 31 NZ_AP022593 Mycolicibacterium arabiense strain JCM 18538 plasmid pJCM18538, complete sequence 2784554-2784584 8 0.742
NZ_CP019428_2 2.1|1568964|55|NZ_CP019428|CRISPRCasFinder 1568964-1569018 55 KU708004 Pseudomonas phage phiAH14a, complete genome 21275-21329 9 0.836
NZ_CP019428_4 4.1|2040757|31|NZ_CP019428|CRISPRCasFinder 2040757-2040787 31 NZ_LR699555 Paraburkholderia sp. Msb3 isolate PDMSB31 plasmid pI 74576-74606 9 0.71

1. spacer 6.1|4153598|33|NZ_CP019428|CRISPRCasFinder matches to NC_011044 (Mycobacterium phage Nigel, complete genome) position: , mismatch: 6, identity: 0.818

-cttgcagtcgtgcttggcggtggcgcacaggct	CRISPR spacer
gctggccg-ggtgcttggcggtggcgcagcggct	Protospacer
 ** ** *  ******************  ****

2. spacer 4.1|2040757|31|NZ_CP019428|CRISPRCasFinder matches to NZ_CP023068 (Ensifer sojae CCBAU 05684 plasmid pSJ05684b, complete sequence) position: , mismatch: 7, identity: 0.774

tgcggaagcggcgagagccgcagcagaagct	CRISPR spacer
cgcggaagaggcgaaagccgcagccgcggca	Protospacer
.******* *****.********* * .** 

3. spacer 4.1|2040757|31|NZ_CP019428|CRISPRCasFinder matches to MN585979 (Mycobacterium phage Yecey3, complete genome) position: , mismatch: 7, identity: 0.774

tgcggaagcggcgagagccgcagcagaagct	CRISPR spacer
cggggccgcggcgggagccgcagcaggagcg	Protospacer
.* **  ******.************.*** 

4. spacer 4.1|2040757|31|NZ_CP019428|CRISPRCasFinder matches to NZ_AP022593 (Mycolicibacterium arabiense strain JCM 18538 plasmid pJCM18538, complete sequence) position: , mismatch: 8, identity: 0.742

tgcggaagcggcgagagccgcagcagaagct	CRISPR spacer
gcctgccgcggcgcgcgccgcagcagaagca	Protospacer
  * *  ****** * ************** 

5. spacer 2.1|1568964|55|NZ_CP019428|CRISPRCasFinder matches to KU708004 (Pseudomonas phage phiAH14a, complete genome) position: , mismatch: 9, identity: 0.836

ccccaccaaaaaacaagggtcggaaaaatatccgatctacctcggataaatctcc	CRISPR spacer
ccccgccagcctcaaaggttcggaaaaatatccgatctacctcggagaaatctcc	Protospacer
****.***.     **** *************************** ********

6. spacer 4.1|2040757|31|NZ_CP019428|CRISPRCasFinder matches to NZ_LR699555 (Paraburkholderia sp. Msb3 isolate PDMSB31 plasmid pI) position: , mismatch: 9, identity: 0.71

tgcggaagcggcgagagccgcagcagaagct	CRISPR spacer
cgcggaagcggcgggaggcgcagctgggcgg	Protospacer
.************.*** ****** *..   

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 7162 : 71017 56 Stx2-converting_phage(33.33%) holin,integrase,tRNA,transposase NA
DBSCAN-SWA_2 1544667 : 1631787 122 Pseudomonas_phage(50.68%) lysis,terminase,tail,plate,holin,tRNA,capsid,protease,integrase attL 1538318:1538334|attR 1620259:1620275
DBSCAN-SWA_3 1728260 : 1733251 6 uncultured_Mediterranean_phage(33.33%) NA NA
DBSCAN-SWA_4 2706624 : 2712855 8 uncultured_Caudovirales_phage(83.33%) tRNA NA
DBSCAN-SWA_5 3215745 : 3282176 53 Stx2-converting_phage(25.0%) integrase,transposase attL 3246065:3246080|attR 3287156:3287171
DBSCAN-SWA_6 4199542 : 4267621 60 Staphylococcus_phage(20.0%) coat,integrase,tRNA,transposase attL 4199196:4199226|attR 4219292:4219322
DBSCAN-SWA_7 6210730 : 6261950 43 Tupanvirus(20.0%) holin,protease NA
DBSCAN-SWA_8 6745427 : 6792600 30 Lymphocystis_disease_virus(50.0%) transposase,protease NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage