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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP044367 Lactobacillus paracasei strain TD 062 plasmid unnamed6 0 crisprs NA 0 0 0 0
NZ_CP044363 Lactobacillus paracasei strain TD 062 plasmid unnamed2, complete sequence 0 crisprs NA 0 0 0 0
NZ_CP044366 Lactobacillus paracasei strain TD 062 plasmid unnamed5, complete sequence 0 crisprs NA 0 0 6 0
NZ_CP044361 Lactobacillus paracasei strain TD 062 chromosome, complete genome 1 crisprs DinG,DEDDh,csa3,cas3,WYL 0 0 12 0
NZ_CP044362 Lactobacillus paracasei strain TD 062 plasmid unnamed1, complete sequence 0 crisprs NA 0 0 0 0
NZ_CP044364 Lactobacillus paracasei strain TD 062 plasmid unnamed3, complete sequence 0 crisprs NA 0 0 0 0
NZ_CP044365 Lactobacillus paracasei strain TD 062 plasmid unnamed4, complete sequence 0 crisprs NA 0 0 0 0

Results visualization

1. NZ_CP044361
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP044361_1 1648904-1649005 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 19105 : 58531 37 Acinetobacter_phage(37.5%) transposase,protease,holin NA
DBSCAN-SWA_2 70502 : 202563 114 unidentified_phage(20.83%) transposase NA
DBSCAN-SWA_3 270360 : 311541 35 Faecalibacterium_phage(37.5%) transposase,protease NA
DBSCAN-SWA_4 474520 : 590860 97 unidentified_phage(10.71%) transposase,protease,bacteriocin,tRNA NA
DBSCAN-SWA_5 801174 : 926251 102 unidentified_phage(13.33%) tRNA,tail,transposase,protease,integrase attL 801123:801182|attR 851356:853016
DBSCAN-SWA_6 935482 : 1012820 85 Lactobacillus_phage(71.93%) head,terminase,tail,transposase,portal,protease,holin,capsid,integrase attL 938115:938133|attR 979956:979974
DBSCAN-SWA_7 1133771 : 1144047 9 Streptococcus_phage(16.67%) transposase,protease NA
DBSCAN-SWA_8 1747697 : 1840143 85 unidentified_phage(15.38%) transposase,tRNA NA
DBSCAN-SWA_9 1857525 : 1911814 58 Lactobacillus_phage(22.22%) head,tail,terminase,transposase,portal,capsid,integrase attL 1854345:1854361|attR 1902626:1902642
DBSCAN-SWA_10 2006443 : 2113203 108 Lactobacillus_phage(60.0%) tRNA,tail,terminase,transposase,protease,holin,integrase attL 1994165:1994224|attR 2110931:2112410
DBSCAN-SWA_11 2224284 : 2262290 39 unidentified_phage(22.22%) transposase NA
DBSCAN-SWA_12 2465800 : 2536149 60 Bacillus_virus(21.43%) transposase,protease,tRNA NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
2. NZ_CP044366
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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 0 : 6282 3 Enterococcus_phage(100.0%) transposase NA
DBSCAN-SWA_2 17291 : 19744 2 unidentified_phage(50.0%) transposase NA
DBSCAN-SWA_3 24940 : 34476 8 Lactobacillus_phage(33.33%) transposase NA
DBSCAN-SWA_4 40181 : 41312 1 Mycoplasma_phage(100.0%) NA NA
DBSCAN-SWA_5 51310 : 53567 3 Lactobacillus_phage(50.0%) transposase NA
DBSCAN-SWA_6 56671 : 63948 9 Lactobacillus_phage(40.0%) transposase NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage