CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes
NZ_CP047175	Rathayibacter sp. VKM Ac-2760 plasmid unnamed2, complete sequence	0 crisprs	NA
NZ_CP047173	Rathayibacter sp. VKM Ac-2760 chromosome, complete genome	10 crisprs	csa3,DEDDh,cas3,WYL,RT
NZ_CP047174	Rathayibacter sp. VKM Ac-2760 plasmid unnamed1, complete sequence	0 crisprs	PD-DExK,csa3

Cas Category Instructions

Results visualization

1. NZ_CP047173

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP047173_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP047173_1

4333-4449

Orphan

Consensus_repeat	Method
TGCTGGTCGAGTAGCCGCGGAGCGGCGTATCGAGACCC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP047173_1

>merge|NZ_CP047173|1|4333-4449|CRISPRCasFinder
TGCTGGTCGAGTAGCCGCGGAGCGGCGTATCGAGACCCACGTCGCAAAGACGTCGGTCGCCGGGTCGTCGTCCCCTGCGTGCTGGTCGAGTAGCCGCGGGGCGGCGTATCGAGACCC

>NZ_CP047173|1|1|4333-4449|CRISPRCasFinder
TGCTGGTCGAGTAGCCGCGGAGCGGCGTATCGAGACCC	ACGTCGCAAAGACGTCGGTCGCCGGGTCGTCGTCCCCTGCG
TGCTGGTCGAGTAGCCGCGGGGCGGCGTATCGAGACCC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP047173.1\|WP_159982653.1\|12450_12975_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP047173.1\|WP_159982635.1\|0_1425_+\|chromosomal-replication-initiator-protein-DnaA	unknown	unknown	gnl\|CDD\|273037
NZ_CP047173.1\|WP_159982649.1\|11310_11721_+\|DUF3566-domain-containing-protein	unknown	unknown	gnl\|CDD\|378809
NZ_CP047173.1\|WP_123706109.1\|14051_14612_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP047173.1\|WP_159982651.1\|12172_12397_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP047173.1\|WP_159982641.1\|4497_5724_+\|DNA-replication/repair-protein-RecF	unknown	unknown	gnl\|CDD\|234608
NZ_CP047173.1\|WP_159982639.1\|3261_4149_+\|decarboxylating-6-phosphogluconate-dehydrogenase	unknown	unknown	gnl\|CDD\|236582
NZ_CP047173.1\|WP_159982637.1\|2014_3166_+\|DNA-polymerase-III-subunit-beta	unknown	unknown	gnl\|CDD\|236089
NZ_CP047173.1\|WP_159982643.1\|5716_6232_+\|DUF721-domain-containing-protein	unknown	unknown	gnl\|CDD\|179552
NZ_CP047173.1\|WP_159982655.1\|12979_13243_-\|thioredoxin	unknown	unknown	gnl\|CDD\|239245
NZ_CP047173.1\|WP_159982645.1\|6409_8491_+\|DNA-topoisomerase-(ATP-hydrolyzing)-subunit-B	unknown	unknown	gnl\|CDD\|235542
NZ_CP047173.1\|WP_159982656.1\|13535_13964_-\|NUDIX-domain-containing-protein	unknown	unknown	gnl\|CDD\|240040
NZ_CP047173.1\|WP_159982647.1\|8714_11318_+\|DNA-gyrase-subunit-A	unknown	unknown	gnl\|CDD\|235502

Protein	Function_ID	Function_description	E-value
NZ_CP047173.1\|WP_159982637.1\|2014_3166_+\|DNA-polymerase-III-subunit-beta	gnl\|CDD\|236089	PRK07761, PRK07761, DNA polymerase III subunit beta; Validated.	8.43114e-175
NZ_CP047173.1\|WP_159982643.1\|5716_6232_+\|DUF721-domain-containing-protein	gnl\|CDD\|179552	PRK03195, PRK03195, DUF721 family protein.	3.73269e-34
NZ_CP047173.1\|WP_159982647.1\|8714_11318_+\|DNA-gyrase-subunit-A	gnl\|CDD\|235502	PRK05560, PRK05560, DNA gyrase subunit A; Validated.	0
NZ_CP047173.1\|WP_159982635.1\|0_1425_+\|chromosomal-replication-initiator-protein-DnaA	gnl\|CDD\|273037	TIGR00362, DnaA, chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006). [DNA metabolism, DNA replication, recombination, and repair].	0
NZ_CP047173.1\|WP_159982649.1\|11310_11721_+\|DUF3566-domain-containing-protein	gnl\|CDD\|378809	pfam12089, DUF3566, Transmembrane domain of unknown function (DUF3566). This family of proteins is functionally uncharacterized. This protein is found in bacteria. Proteins in this family are typically between 136 to 304 amino acids in length. This region represents a transmembrane region found at the C-terminus of the proteins.	1.04235e-29
NZ_CP047173.1\|WP_159982655.1\|12979_13243_-\|thioredoxin	gnl\|CDD\|239245	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functional TRXs have been reported in most organisms; in eukaryotes, they are located in the cytoplasm and the mitochondria. Higher plants contain more types (at least 20 TRX genes have been detected in the genome of Arabidopsis thaliana), two of which (types f amd m) are located in the same compartment, the chloroplast. Also included in the alignment are TRX-like domains which show sequence homology to TRX but do not contain the redox active CXXC motif. Group II proteins, in addition to either a redox active TRX or a TRX-like domain, also contain additional domains, which may or may not possess homology to known proteins.	8.68395e-07
NZ_CP047173.1\|WP_159982645.1\|6409_8491_+\|DNA-topoisomerase-(ATP-hydrolyzing)-subunit-B	gnl\|CDD\|235542	PRK05644, gyrB, DNA gyrase subunit B; Validated.	0
NZ_CP047173.1\|WP_159982656.1\|13535_13964_-\|NUDIX-domain-containing-protein	gnl\|CDD\|240040	cd04684, Nudix_Hydrolase_25, Contains a crystal structure of the Nudix hydrolase from Enterococcus faecalis, which has an unknown function. In general, members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity. They also contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required.	6.25816e-36
NZ_CP047173.1\|WP_159982641.1\|4497_5724_+\|DNA-replication/repair-protein-RecF	gnl\|CDD\|234608	PRK00064, recF, recombination protein F; Reviewed.	1.38762e-128
NZ_CP047173.1\|WP_159982639.1\|3261_4149_+\|decarboxylating-6-phosphogluconate-dehydrogenase	gnl\|CDD\|236582	PRK09599, PRK09599, NADP-dependent phosphogluconate dehydrogenase.	1.7377e-179

>NZ_CP047173.1|WP_159982639.1|3261_4149_+|decarboxylating-6-phosphogluconate-dehydrogenase
MHIGLVGLGKMGDNMRSRLREKGVEVTGYDRNPDVSDAASLDEMIAALPAPRIVWVMVPAGAITDAVVTDLSEKLSEGDLVIDGGNSRFTEDFKHDALLKPKGIHYIDAGVSGGVWGLENGYGLMVGGPKELVDYAMPVFDALRPEGPREEGFVHVGEVGAGHYAKMVHNGIEYALMQAFAEGYELLDTRKDIIKDVTGTFKAWQRGTVVRSWLLELLVRALEQDPEFEHIEGYVQDSGEGRWTIEEAINNAVPVPTISASIFARFVSRQEDSPAMKAVAALRNQFGGHSVKAVD
>NZ_CP047173.1|WP_159982637.1|2014_3166_+|DNA-polymerase-III-subunit-beta
MRFQANRDVFSEAVSFAVKLLPQRTTLPILSGILIEATAEGLTLSSFDYEVSAQTQIAADVEETGTVLVSGRLLADIANRLPNAPVRVATEESRVSVSAGSAHFTLLQMPVEEYPSIPEIDASTGLVPADAFSAAISQVAVAASRDDVTPVITGVQLEITENTIGLVATDRYRVAVREIDWDNGDNAAPSQPLTALVPARTLQEVGKTFSHSGTVSVAITQRDERELIAFTADRKTVTSLLIKGNFPPVKRLFPAAVENYAVMATSDLIEATRRVSLVLEREAALRFSFSSDGLTLEAIGSEQAQASESIDAIVTGTDVVVSLKPQFLLDGLAAVHSEFVRIAFTKTENPNKPGPVLITAQTSREQPGNDSYRYLLQPNLLLR
>NZ_CP047173.1|WP_159982635.1|0_1425_+|chromosomal-replication-initiator-protein-DnaA
MPDDTSMIDAWNVIRGALSQDERITAPMYGFVSLVEPKGIMAGTFYLEVPNEFTRGMLEHRVRVPLLSAIGALDDSFGVTTFAFVVNPDIEHEPMSSPSSDSMNPFEPVTGSSATVAPPVRVVEELRTVPATDTRLNPKYSFDNFVIGGSNRFAHAAAVAVAEAPAKAYNPLFVYGDSGLGKTHLLHAIGHYAMSLYPGIRVRYVSSEEFTNDFINSIANNRGNAFHGRYRNVDILLIDDIQFLQGKAETQEAFFHTFNQLHDHNKQVVITSDLPPKALTGFEDRMRSRFEWGLITDVQAPDLETRIAILRKKAVSEKLLVPDDILEFMASKVSSNIRELEGTLIRVTAFASLNRTPVDMALVQTVLKDLITLDEDNVISPVDIINHTADYFKLTVDDLYGSSRSQAVATARQIAMYLCRELTNLSLPKIGQLFGNRDHTTVMYANKKISELMKERRSIYNQVTELTTRIKTNR
>NZ_CP047173.1|WP_159982641.1|4497_5724_+|DNA-replication/repair-protein-RecF
MQVTQLALSDFRNYASVDVALAPGPNLFVGRNGQGKTNLVESLGYLSTLGSHRVSTDQALIRAGQDSAVIRARLRNGERDLLAEVQINRSSPNRAQINRGGIKPRELRRFFSSVLFAPEDLLLIRGDPSARRRFLDQLVVLRSPRMSAVQADYERVLRQRNSLLKSARASGVRDPAKLGTLDIWDERLVALGTEIMQSRLTLVEELSGPVRSAYESVAGADQRPLLRSRLSIAGAVDDEDEPVDPSASSSPVASAELAGTFSAALLSGRRRELDRGISLVGPHRDDVQFELNDLPARGYASHGESWSFALALKLGAAELLRRDSPMGDPVLMLDDVFAELDARRRERLAAVVADYEQVLITAAVFDDVPPALAAHTVRIEAGRIVESDAVPDAAPAPVPDPDGEPNDG
>NZ_CP047173.1|WP_159982643.1|5716_6232_+|DUF721-domain-containing-protein
MADSPRRAAPAPDSEAARVYQHLKEVFGGDAPRRIRKTVDRAEPKGDAAPFGGGRDPHDLGDVLSSLTVKLGWTAPLAQGDLISSWTAIAGEETAKHSAPVGVVDGVLTVACESTAWSTQLRLMRIEIMNHIAVNHPDAGITAIRFQGPDVPNWKKGPRSIPGRGPRDTYG
>NZ_CP047173.1|WP_159982645.1|6409_8491_+|DNA-topoisomerase-(ATP-hydrolyzing)-subunit-B
MTPEPTDSTSPAANDLDANGSTGPSAPVDAPHESMSTKSSGDYGANQIQVLEGLEAVRKRPGMYIGSTGPRGLHHLVYEIVDNAVDEALAGHCDNIEVVVRADGGLTVVDNGRGIPVDMHPTEGISTVELVLTVLHAGGKFGGGGYAVSGGLHGVGSSVVNALSTRLEVEVKRQGAVYRMTFADGVPEAPLAKGEASDETGTTITFWPNADIFETVEFDYETLRARFQQMAFLNKGLRIALTDEKEVEFEGVGEDETSGPRTDVFLYEKGLVDYVEYINSLKKSDLVHSEIIDFESEDTERRISLEVAMQWTTAYTESVHTYANTINTHEGGTHEEGFRAALTTLVNKYARANNLLKEKDENLSGDDIREGLTAVVSIKLGEPQFEGQTKTKLGNTEAKAFVQRVAGEQLADWFDRNPNQAKDIIRKAIQAASARMAARKARETARRKGLLEGGGMPGKLKDCQSKDPSISEIFIVEGDSAGGSAVQGRNPETQAILPLRGKILNVEKARLDRALGNNEVQAMITAFGAGIGEDFNPDKARYHKIILMADADVDGQHITTLLLTLLFRYMRPLIDLGYVYLAQPPLYRLKWSNSPHEYVYSDRERDALIAHGSASNKRMPKENGIQRYKGLGEMDYKELWETTMDPATRTLLQVTLDDAAAADEIFSTLMGEDVESRRSFIQKNAKDVRFLDI
>NZ_CP047173.1|WP_159982647.1|8714_11318_+|DNA-gyrase-subunit-A
MADESDTPTGPADGEDIVTETGVVIHGHDKIEPVDLQLEMQRSYLDYAMSVIVGRALPEVRDGLKPVHRRVIYAMYDGGYRPDKAFSKCSRVVGDVMGQFHPHGDSAIYDALVRLVQPWSLRYPLALGQGNFGSPGNDGAAAPRYTETKMAPLALEMVRDIDKNTVDFQDNYDGRTREPAILPARFPNLLVNGSVGIAVGMATNIPPHNLREVASGAKWALENPEASREELLEALLQRIKGPDFPTGAQILGVRGIQDAYRTGRGSITMRAVVSIEEIQGRTCLVVTELPYQVNPDNLAIKIAELVKDGRVSGIADIRDETSGRTGQRLVVVLKRDAVAKVVLNNLYKHTPLQENFGANMLAIVDGIPRTLSLDGFIRAWVDHQVEVIVRRTQYLLDEAEARIHILRGYLKALDALDEVIALIRRSPTVEEARDGLMELLDIDEVQSRAILDMQLRRLAALERQKIIDEHDRIQAEIEDYKSILASPERQRTIISDELDEIVDRFGDDRRTEILFGFDGDMSVEDLIPEEEMVVTVTRGGYLKRTRSDSYRAQHRGGRGVRGAQLKADDIVEHFFVTTTHHWLLFFTNTGRVYRAKTYELQEVSRDAKGQHIANLLALEPGEQIAQILDIRDYEAARYLVLATRDGLVKKTALAEYDTNRSGGIIAIKLREGDELVSALLVDEDSDVLLVSRKGMSIRFTASDQALRPMGRSTSGVMGMSFRGDDRLLDANVVSDEGYVFVVTEGGYAKRTAVDQYRLQGRGGLGIKVAKLEEKRGDLVGAIITGEDDEVLVVLASGKVVRSAVAEVPAKGRDTMGVVFARFAEDDRIIALAKNTERNIDAPDEDPDAAAATAESDAVSEEDGSVDE
>NZ_CP047173.1|WP_159982649.1|11310_11721_+|DUF3566-domain-containing-protein
MSSTVAEKLARKSAKSPAAKQVRLKLVYVDFWSAVKLSFLLGLTLAIITIVVVYLVYTVLAQTGVFDEVNGLVQDIAGAEAFDLNTIISLPQIMGFAIVVAVLNTIVTTALGAIVALLYNLSVKITGGLLVGFTNQ
>NZ_CP047173.1|WP_159982651.1|12172_12397_-|hypothetical-protein
MLRAAGVTENVTVPVCAELLGDLRRCFDALTAYRSGDVHPIIETLAGASFAAVENGRRLATEIAAIGAQWDAES
>NZ_CP047173.1|WP_159982653.1|12450_12975_-|hypothetical-protein
MPHRRRVASVAVVLAATASLALAGCSTQPVSEATVGIGRGGQRAEVLGVVVVCSGAVDGLDLAIEDTAPLLIGDRERRITRWVAPEPVDDIGATDLSGRTVWPADREIERFPLGVDLTLGAYAVGGSVVGRPVVFTAEQFDTLSVGEIIVGDIRDGTSETLSVENFLGLACQPR
>NZ_CP047173.1|WP_159982655.1|12979_13243_-|thioredoxin
MIVELYTSAFCGACHAARSVLERAAELVPAAEIREFDVAFAPAAAEAADVRSTPTVVVRDETGRAVFRAEGAPSLPQALSALALAVG
>NZ_CP047173.1|WP_159982656.1|13535_13964_-|NUDIX-domain-containing-protein
MDIRVAAYGVIIDGERMLLAHWSQGPWEAWTLPGGGIDEGESPADAAVREIFEETGYHAELEGLIGVDSHVIPAHRRSDPEAGPLHAIRVVYRARVVGGELTHEVDGSTDAAAWFPLAEVEGLERVELIDVALTMNEAWSLR
>NZ_CP047173.1|WP_123706109.1|14051_14612_-|hypothetical-protein
MGLSRKHKKDLKRLRKNAEAVWSEQQEVLAHAASVLEKSRRHATKYAKKEVVPAVKDAYSSRVKPVYDNGVSAVEGTYSSARDAYKHKVLPTFAAVGGTAAAAFEAAKDSKNRAKLAEISKARWEELTTPPKKKNKVGTVFAIGAALVAVGGIGYAVWQTFRADDELWVAEDEPASAAQSPASTAS

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Crispr_ID: NZ_CP047173_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP047173_2

427354-427468

Orphan

Consensus_repeat	Method
CGCACCCCACTCCTCCGAAGTTGCGGTAGTCG	CRISPRCasFinder

1 spacers

csa3

The CRISPR arrays of NZ_CP047173_2

>merge|NZ_CP047173|2|427354-427468|CRISPRCasFinder
CGCACCCCACTCCTCCGAAGTTGCGGTAGTCGCGCTCGACTACCGCAACTTCTGGAGGGTGGGAGGGGCCGCTCGCGCTCGGGGCGCACCCACTCCTCCGAAGTTGCGGTAGTCG

>NZ_CP047173|2|2|427354-427468|CRISPRCasFinder
CGCACCCCACTCCTCCGAAGTTGCGGTAGTCG	CGCTCGACTACCGCAACTTCTGGAGGGTGGGAGGGGCCGCTCGCGCTCGGG
GCGCACCCACTCCTCCGAAGTTGCGGTAGTCG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP047173.1\|WP_159983243.1\|427527_427950_-\|RbsD-or-FucU-transport	unknown	unknown	gnl\|CDD\|377444
NZ_CP047173.1\|WP_159983245.1\|427960_428947_-\|substrate-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|224525
NZ_CP047173.1\|WP_159983239.1\|425057_425939_+\|SMP-30/gluconolactonase/LRE-family-protein	unknown	unknown	gnl\|CDD\|369882
NZ_CP047173.1\|WP_167306085.1\|421280_423266_+\|amino-acid-transporter	unknown	unknown	gnl\|CDD\|372624
NZ_CP047173.1\|WP_159983235.1\|419369_421076_+\|RNase-J-family-beta-CASP-ribonuclease	unknown	unknown	gnl\|CDD\|223668
NZ_CP047173.1\|WP_159983261.1\|436548_437439_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|223656
NZ_CP047173.1\|WP_159983253.1\|432571_433828_-\|FAD-binding-protein	unknown	unknown	gnl\|CDD\|130740
NZ_CP047173.1\|WP_159983231.1\|417135_417849_-\|DUF3800-domain-containing-protein	unknown	unknown	unknown
NZ_CP047173.1\|WP_159983257.1\|434696_435533_+\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|375319
NZ_CP047173.1\|WP_159983255.1\|433914_434595_-\|SDR-family-NAD(P)-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|187585
NZ_CP047173.1\|WP_055794488.1\|414783_415134_-\|helix-turn-helix-transcriptional-regulator	csa3	COG0640_csa3_CAS-I-A	gnl\|CDD\|223713
NZ_CP047173.1\|WP_159983241.1\|425952_427284_-\|DUF21-domain-containing-protein	unknown	unknown	gnl\|CDD\|224173
NZ_CP047173.1\|WP_159983249.1\|430095_431745_-\|trehalose-synthase	unknown	unknown	gnl\|CDD\|200473
NZ_CP047173.1\|WP_159983259.1\|435501_436458_-\|EamA-family-transporter	unknown	unknown	gnl\|CDD\|273359
NZ_CP047173.1\|WP_159983237.1\|423357_424797_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|340929
NZ_CP047173.1\|WP_159983233.1\|418113_418671_+\|recombinase-family-protein	unknown	unknown	gnl\|CDD\|239737
NZ_CP047173.1\|WP_159983229.1\|416538_417033_+\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|224168
NZ_CP047173.1\|WP_159983251.1\|432051_432450_-\|cation-transport-regulator-ChaB	unknown	unknown	gnl\|CDD\|377614
NZ_CP047173.1\|WP_159983247.1\|428948_430004_-\|aldo/keto-reductase	unknown	unknown	gnl\|CDD\|381297
NZ_CP047173.1\|WP_159983227.1\|415222_416542_+\|FAD-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|379355

Protein	Function_ID	Function_description	E-value
NZ_CP047173.1\|WP_159983243.1\|427527_427950_-\|RbsD-or-FucU-transport	gnl\|CDD\|377444	pfam05025, RbsD_FucU, RbsD / FucU transport protein family. The Escherichia coli high-affinity ribose-transport system consists of six proteins encoded by the rbs operon (rbsD, rbsA, rbsC, rbsB, rbsK and rbsR). Of the six components, RbsD is the only one whose function is unknown although it is thought that it somehow plays a critical role in PtsG-mediated ribose transport. This family also includes FucU a protein from the fucose biosynthesis operon that is presumably also involved in fucose transport by similarity to RbsD.	1.02727e-36
NZ_CP047173.1\|WP_159983245.1\|427960_428947_-\|substrate-binding-domain-containing-protein	gnl\|CDD\|224525	COG1609, PurR, Transcriptional regulators [Transcription].	3.2596e-84
NZ_CP047173.1\|WP_159983239.1\|425057_425939_+\|SMP-30/gluconolactonase/LRE-family-protein	gnl\|CDD\|369882	pfam08450, SGL, SMP-30/Gluconolaconase/LRE-like region. This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30), gluconolactonase and luciferin-regenerating enzyme (LRE). SMP-30 is known to hydrolyze diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 and LRE.	3.81714e-59
NZ_CP047173.1\|WP_167306085.1\|421280_423266_+\|amino-acid-transporter	gnl\|CDD\|372624	pfam13520, AA_permease_2, Amino acid permease.	2.10988e-12
NZ_CP047173.1\|WP_159983235.1\|419369_421076_+\|RNase-J-family-beta-CASP-ribonuclease	gnl\|CDD\|223668	COG0595, COG0595, mRNA degradation ribonucleases J1/J2 (metallo-beta-lactamase superfamily) [Translation, ribosomal structure and biogenesis; Replication, recombination and repair].	0
NZ_CP047173.1\|WP_159983261.1\|436548_437439_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|223656	COG0583, LysR, Transcriptional regulator [Transcription].	2.23219e-24
NZ_CP047173.1\|WP_159983253.1\|432571_433828_-\|FAD-binding-protein	gnl\|CDD\|130740	TIGR01679, bact_FAD_ox, FAD-linked oxidoreductase. This model represents a family of bacterial oxidoreductases with covalently linked FAD, closely related to two different eukaryotic oxidases, L-gulonolactone oxidase (EC 1.1.3.8) from rat and D-arabinono-1,4-lactone oxidase (EC 1.1.3.37) from Saccharomyces cerevisiae.	2.95472e-46
NZ_CP047173.1\|WP_159983257.1\|434696_435533_+\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|375319	pfam17765, MLTR_LBD, MmyB-like transcription regulator ligand binding domain. This domain is found in a family of actinobacterial transcription factors. The structure shows it has a PAS domain like fold and it is bound to Myristic acid.	7.93183e-41
NZ_CP047173.1\|WP_159983255.1\|433914_434595_-\|SDR-family-NAD(P)-dependent-oxidoreductase	gnl\|CDD\|187585	cd05324, carb_red_PTCR-like_SDR_c, Porcine testicular carbonyl reductase (PTCR)-like, classical (c) SDRs. PTCR is a classical SDR which catalyzes the NADPH-dependent reduction of ketones on steroids and prostaglandins. Unlike most SDRs, PTCR functions as a monomer. This subgroup also includes human carbonyl reductase 1 (CBR1) and CBR3. CBR1 is an NADPH-dependent SDR with broad substrate specificity and may be responsible for the in vivo reduction of quinones, prostaglandins, and other carbonyl-containing compounds. In addition it includes poppy NADPH-dependent salutaridine reductase which catalyzes the stereospecific reduction of salutaridine to 7(S)-salutaridinol in the biosynthesis of morphine, and Arabidopsis SDR1,a menthone reductase, which catalyzes the reduction of menthone to neomenthol, a compound with antimicrobial activity; SDR1 can also carry out neomenthol oxidation. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.	6.6895e-61
NZ_CP047173.1\|WP_055794488.1\|414783_415134_-\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|223713	COG0640, ArsR, Predicted transcriptional regulators [Transcription].	2.27243e-16
NZ_CP047173.1\|WP_159983241.1\|425952_427284_-\|DUF21-domain-containing-protein	gnl\|CDD\|224173	COG1253, TlyC, Hemolysins and related proteins containing CBS domains [General function prediction only].	3.48767e-113
NZ_CP047173.1\|WP_159983249.1\|430095_431745_-\|trehalose-synthase	gnl\|CDD\|200473	cd11334, AmyAc_TreS, Alpha amylase catalytic domain found in Trehalose synthetase. Trehalose synthetase (TreS) catalyzes the reversible interconversion of trehalose and maltose. The enzyme catalyzes the reaction in both directions, but the preferred substrate is maltose. Glucose is formed as a by-product of this reaction. It is believed that the catalytic mechanism may involve the cutting of the incoming disaccharide and transfer of a glucose to an enzyme-bound glucose. This enzyme also catalyzes production of a glucosamine disaccharide from maltose and glucosamine. The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase.	0
NZ_CP047173.1\|WP_159983259.1\|435501_436458_-\|EamA-family-transporter	gnl\|CDD\|273359	TIGR00950, Uncharacterized_inner_membrane_transporter_YicL, Carboxylate/Amino Acid/Amine Transporter. [Transport and binding proteins, Amino acids, peptides and amines].	1.43836e-11
NZ_CP047173.1\|WP_159983237.1\|423357_424797_-\|MFS-transporter	gnl\|CDD\|340929	cd17371, MFS_MucK, Cis,cis-muconate transport protein and similar proteins of the Major Facilitator Superfamily. This subfamily is composed of Acinetobacter sp. Cis,cis-muconate transport protein (MucK), Escherichia coli putative sialic acid transporter 1, and similar proteins. MucK functions in the uptake of muconate and allows Acinetobacter calcoaceticus ADP1 (BD413) to grow on exogenous cis,cis-muconate as the sole carbon source. The MucK subfamily belongs to the Metazoan Synaptic Vesicle Glycoprotein 2 (SV2) and related small molecule transporter family (SV2-like) of the Major Facilitator Superfamily (MFS) of membrane transport proteins. MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	1.20543e-41
NZ_CP047173.1\|WP_159983233.1\|418113_418671_+\|recombinase-family-protein	gnl\|CDD\|239737	cd03768, SR_ResInv, Serine Recombinase (SR) family, Resolvase and Invertase subfamily, catalytic domain; members contain a C-terminal DNA binding domain. Serine recombinases catalyze site-specific recombination of DNA molecules by a concerted, four-strand cleavage and rejoining mechanism which involves a transient phosphoserine linkage between DNA and the enzyme. They are functionally versatile and include resolvases, invertases, integrases, and transposases. Resolvases and invertases affect resolution or inversion and comprise a major phylogenic group. Resolvases (e.g. Tn3, gamma-delta, and Tn5044) normally recombine two sites in direct repeat causing deletion of the DNA between the sites. Invertases (e.g. Gin and Hin) recombine sites in inverted repeat to invert the DNA between the sites. Cointegrate resolution with gamma-delta resolvase requires the formation of a synaptosome of three resolvase dimers bound to each of two res sites on the DNA. Also included in this subfamily are some putative integrases including a sequence from bacteriophage phi-FC1.	6.81943e-59
NZ_CP047173.1\|WP_159983229.1\|416538_417033_+\|GNAT-family-N-acetyltransferase	gnl\|CDD\|224168	COG1247, COG1247, Sortase and related acyltransferases [Cell envelope biogenesis, outer membrane].	4.21e-42
NZ_CP047173.1\|WP_159983251.1\|432051_432450_-\|cation-transport-regulator-ChaB	gnl\|CDD\|377614	pfam06150, ChaB, ChaB. This family of proteins contain a conserved 60 residue region. This protein is known as ChaB in E. coli and is found next to ChaA which is a cation transporter protein. ChaB may be regulate ChaA function in some way.	5.47188e-15
NZ_CP047173.1\|WP_159983247.1\|428948_430004_-\|aldo/keto-reductase	gnl\|CDD\|381297	cd19071, AKR_AKR1-5-like, AKR1/2/3/4/5 family of aldo-keto reductase (AKR) and similar proteins. Aldo-keto reductases (AKRs) are a superfamily of soluble NAD(P)(H) oxidoreductases whose chief purpose is to reduce aldehydes and ketones to primary and secondary alcohols. The family includes AKR1A/B/C/D/E/G/I, AKR2A/B/C/D/E, AKR3A/B/C/D/E/G, AKR4A/B/C, AKR5A/B/C/D/E/F/G/H, and similar proteins.	4.61498e-98
NZ_CP047173.1\|WP_159983227.1\|415222_416542_+\|FAD-dependent-oxidoreductase	gnl\|CDD\|379355	pfam13738, Pyr_redox_3, Pyridine nucleotide-disulphide oxidoreductase.	1.70636e-15

>NZ_CP047173.1|WP_159983241.1|425952_427284_-|DUF21-domain-containing-protein
MDLDTLLNIGLVVLFVLIGGVFAGTEMAIVSLRESQVRAIEAGSERGRRIAELVRNPNTFLSAVQIGVTLAGFFSSAYGASTIAPDLVPPLESLGLSNGAASTVALILMTLVIAYLSLVLGELVPKRLAMQKSVAFTRVLAPPLNALARAMRPIIWLLSVSTDAVVRLLGADPREKGESVSADEVRDMISSNTEIAEDSRQLLADVFRADDRRVAEVMRPRPDVDFLRGDLPVAEGYAEVLGRPHSRYPVVGENRDDVLGFVHVRDLMAAFPEAERHGTASSVADITRPILAVPGTTKVLAALRTMRQDGHQIAVVIDEYGGTDGIITLEDLLEELVGEIYDEYDGARQDVDAKAGEQLQDLDGGMILEDLEELLGIELPEGPYETVGGYVLDRIGRVAVVGDTLVVGDHVLRVAETDRYRISRVTLTPQPASQPAAADEDRL
>NZ_CP047173.1|WP_159983239.1|425057_425939_+|SMP-30/gluconolactonase/LRE-family-protein
MIAATPAGTPAYVLSEGPVWDAETGRLTWVDIEAGAVLSAPLTVDGLGAITRSDVGEQVGCALPLGDGRVLVALTRRLAILEVDGSLTRGSELLPEGHRFNDGSIDPQGRLVVGSLTLGDSAGDDVLLRLEHDGAVTVLDHDLRLSNGLAWSPDGALMYSVDTESGVVYRRSYRDGENGTRETFLEPEEGVFIDGMTVDSEGRLWCSVWGGSGVRVYDAEGRRLEGEGIAIDAPHSSSIAFAGEGLDVAVISSASRDLSADERARYPQAGGLWLARPGATGLPATRWVETRLP
>NZ_CP047173.1|WP_159983237.1|423357_424797_-|MFS-transporter
MSTDTEERGPVRSLVPARIDRLPWTRFHWSIVVGLGFSWVLDGLEIQIVASAGFAKEFDLSAAQVGVLGTVYLVGQIVGALIFGRLSDRLGRRKLFILTLVIYLVASGLAGLAPNYLFLAVFRFFAGMGIGGEYAAINSAIDELIPSKYRGRVDIAINGTYWGGAALGSAANLFFLNDQLFAENVGWRLGFFLGPILGLAIIYLRRHIPESPRWLMTHGREEEAERTVDEIERRVESEGGNLEPVDDSQAITVKATESIPFRTIARVLIKQYPKRTLVGATMMITQSFLYNAIFFTYALVLENFYGVEQNAVSYFFFPFAIGNLVGPLVLGHLFDVWGRRKMIFLTYGVSGAVLALSALLFSMDVLTATTQTILWCVSFFFASAGASSAYLTVSEIFPLELRSQAISYFFTLGQIAGAVAPTLYGVLIGDGSDRGPLTVGYFVGAAVMIVGGVVALIFGVDAERRSLESITEPLSTVHD
>NZ_CP047173.1|WP_167306085.1|421280_423266_+|amino-acid-transporter
MTSSLVRGDADALEPSPLDSARSGGVKAWLLEGLRDGSGTHPGPHSTTEKTHSWWRVMCLTGVDYFSTLGYQPAIAALAAGLVSPLATIVLVLLTLFGALPVYRRVARESFRGEGSIAMLERLLPWWGGKLFVLVLLGFAATDFMITITLSAADATAHAVENPFAPEWFHGAEVPLTLGLVALLGIVFLRGFKEAISIAVVLVAVFLALNAVVIVVAIAHVAENPVVIGNWWSALTTQHGNPLIMVGIALIVFPKLALGLSGFETGVAVMPQIRGDASDTDAAPLGRIRGAKRLLITAAVTMSAFLITSSFVTTLLIPQAEFQPGGQANGRALAYLAHEYLGDAFGTAYDISTICILWFAGASAMAGLLNIVPRYLPRYGMAPQWAAAVRPLVLVFTAVAFLITILFQADVDAQGGAYATGVLVLITSASVAVFLSAKRKKQRKRAIGFAVIALVFVYTTVVNVVERPDGVRIASLFILGILVVSLISRVRRSFQLRATSVTFDAQALDFLSTDADDYGVIRILANEPDDGSEAEYRDKLAEEQRDSNLPMRGPILFLEVHTTDSSDFEEDLVVEGRVQHGFRVLTVTSGNIPNTIATVLLEIRDLTGVRPDVYFEWTEGGPLSNMFRFLITGTGEVAPVTREVLRRAEPRRERRPGVHVG
>NZ_CP047173.1|WP_159983235.1|419369_421076_+|RNase-J-family-beta-CASP-ribonuclease
MRNARTAKPVRHHLELPAPKPLEKGGLRITPLGGLGEIGRNMTVFEHEGKLLIVDCGVLFPEENQPGIDVILPDFAAIRSRLKDIEAIVLTHGHEDHIGGVPYLLKERGDIPIIASTFTLALITAKLTEHRITPRTRPVKEGDRIDAGVFDLEFLAVNHSIPDGLAVAIRTEAGLVLHTGDFKMDQFPLDGRTTDLPGFARLGDEGVDLFLVDSTNADVPGFAISEGDLAPAIDQVFRTAPRRIVVSSFASHVHRIQQVLDAAQKHGRKVAFVGRSMVRNMGIAAELGYLKIPAGLVVDMKVLEKLPATEIVMICTGSQGEPMAALSRMANKDHIIDIGPGDTVLLASSLIPGNENAIYRIINAFTRWGATVVHKGNAKVHVSGHASAGELAYCYNILRPTAVLPVHGEWRHLTANAAIATRTGIDEKNVFVVEDGVSIDLVKGRSRMSGRIPADLVFVDGTTIGVATEDAMIDRRVLAEEGAITVLAIVDLDRGTLGEPVEFFTRGFVEEASWKANASKAIDDAVLQAAGQPTDRDAIEKLITRTLGRWLTRRHRRNPVITTIVVEE
>NZ_CP047173.1|WP_159983233.1|418113_418671_+|recombinase-family-protein
MASIGYARVSTRDQNPDAQTDALTAAGCAKVFVEHASGVLAKRPALEDALDYLREGDSLVVTKLDRLGRSVRNLKEVADGLQQRGVGLKALSQGIDTTTPGGRLFFHMLAAIAEFEHDLIVERTHDGLAAARARGRKGGGRFKMTPTKAKQARAMYDEKTYTVQQIAETFGVSRGTIYRHLTEDH
>NZ_CP047173.1|WP_159983231.1|417135_417849_-|DUF3800-domain-containing-protein
MLIAYVDESYTQDFYFIGAAVTTQEKWEQLEQGYAALRDQIAADYGVPADVEFHGHELMGGAGEWAPLRGKHREAAGIYAAALRVAQEAEVRYLFRGVDVKRLNARYRYPEQPHKIVLQHLLERVNEYRRDVFSSDTEEVIVVADEIATQEEHRRQFESYRSLGTPGYLTSRLDLISSPIQFASSRNAAGVQAADLAVYLHRRRQTVTETHPKSAATMARLSGLVAASTSHDWIWTP
>NZ_CP047173.1|WP_159983229.1|416538_417033_+|GNAT-family-N-acetyltransferase
MTAVRPMAPEDWAAVEAIYREGIATGHATFEAEPPSGEAFNAGKMEVGRLVAFDGEQILGWGALSKVSTRPVYGGVVEHSVYIAAVARGRGVGSMLLAELIAAAENADLWTIQASIFPENIASLALHDRAGFRRVGTRERIAQMTYGPAAGQWRDTILIERRRP
>NZ_CP047173.1|WP_159983227.1|415222_416542_+|FAD-dependent-oxidoreductase
MTMLLTVPPRTDERRLTGLPVAVIGAGPVGLAAAAQLLERGLDVIVYEAGDSAGAAVQQWGHTRLFSPWEYLVDAACGRLLDAAGWEAPAAKKLPTGHEFVRDYLAPLAATPQLAPVIRYRSRVTAVTREGMDRTRSTGRAGTPFLLRLDTLEGVTDVTARAVIDTSGTYSTPNALASAGLDPIGVLDVAEHLSHALPDVLGADRARFAGKSVLVVGAGHSAANTLIKLARLAREEPDTRITWAIRGTSPLRVFGSGDDELEERGKLGGTVHQLVREGAITLLDRFEIDRLEKTPSGGVTVLGRRRKERESVEADVVVQATGFRPDLDMLREIRVSLDEIVEAPRALASLIDPNLHSCGTVDPHGVAELAHPEPNFYIAGMKSYGRAPTFLLVTGYEQVRSIADELAGDHAAARLVQLVLPETGVCSTDIGSAGGSCCS
>NZ_CP047173.1|WP_055794488.1|414783_415134_-|helix-turn-helix-transcriptional-regulator
MATTELTLTAAAAACCAPLAREPLSAEGAELLARALKAMADPARLRLVSIVASSSSGEVCVCDFTEPVGLSQPTVSHHLKILVDAGILAREKRGTWAYFSLVPGALDSLAGMLTRV
>NZ_CP047173.1|WP_159983243.1|427527_427950_-|RbsD-or-FucU-transport
MLTTTLLHPEILHALARAGHGSRILIADGNYPVGTTLGKSSALVHLNLRPDTLTVDEILEALLTAIVVEEATVMTPAPGLDVPAQDAFRATLAGVPFTSVERHAFYAEARTDDVALTIASGDRRIYANLILTIGVRPADA
>NZ_CP047173.1|WP_159983245.1|427960_428947_-|substrate-binding-domain-containing-protein
MATYKDLQRLTGLSLSTISKHYNGLPVRPENAAAIEAAAERLGFRVNGFARGLRSRRSRTVGVLLPALDNEFHLSIIAGLERALRGEGIGVLVGVSLPEPGAAVRLLLEKMVDGIVAVPTAGDVAALRDASEQGTPVVTLDWVDDALVTDRVVLDNRAAGASAARLLADHGHRAVAVLGGDPSVSTTRDRTAGFADELAARGLAAPAVEHGPLTVESGVAAMERILARAERPTAVFASNRELTVGALTALGDSGLRIPADLSLVGFDTVELARVVRPRLTIVAQPTEEIAAEAAALIRRRLDGAAEPPETRILPSRLLAGASVHHLHP
>NZ_CP047173.1|WP_159983247.1|428948_430004_-|aldo/keto-reductase
MDAAVTAADTAADTRTAAPPAFRTLASGRRIPAIGAGTFGSDRYDAETVGLAVEQSLRAGFRLLDCATVYGNEPRVGRAIAASGVPRDELFVMSKIWNDAHEPEAAVASVERSLADLGLDVLDAVFVHWPFPNHHPPHAETDARDPEARPYEHAAFLRTWAALESLVDRGLVSHLGTSNVTIPKLERILADVRIAPALNEMELHPCFQQPELFRYCLDHDIQPIGYSPLGSPSRPERDRVEGDLVDIEHPAVQAVARARGVHPVVVCLAWAVNRGQIPIPFAVKPEQIEANLAAASLALTAAEQESLRGAERNNRLIKGQVFLWPGSTDWLDLWDADGTVPGWDSYGSPAL
>NZ_CP047173.1|WP_159983249.1|430095_431745_-|trehalose-synthase
MRVTDTSDLWWRSAVYYNLDVKTFMDWDDDGVGDLEGLAHRIDYLAELGVSCLWLAPFYTSPGRDNGYDISDFFGVDERYGHHGDVVEVIRTAHDRGMRVIVDLVVNHTSDQHPWFQAARSSPDSPYRDYYVWRDEPPADEPANVFPDAEDGVWFHDEQAGQYYLHNFYRHQPDLNTDNPAVRDEIAKLVGFWLQLGVDGFRVDAVPFLIEPGAPDEHEWLRLLRRFVTRRSGEAMMLGEVDVTREEQLAFFGGEDADELSMQFDFIGNQYLYLALAREDATPLAEAIASRPAISTGSQWANFARNHDELNLSQLSDGEREEVFAAFAPEEAQRIHGRGIVRRLPPMLDGDPRRLRMVYSLLFSLPGAPVLYYGEEIGMGENADIPDRSGVRTPMQWTSAANAGFSRADAGDLIAAVTEGGFGPEHVNAADQLKDPDSLLAHLKGLAWLYRRSPEIGWGEYTHLPSDQSCVFAHRMSASTGTTVAVHNFASSPRTVALTLPGSAPGSRLVDSLGGESQPIGDDGAVSIGIDGYGARWFRVVTDESRRLV
>NZ_CP047173.1|WP_159983251.1|432051_432450_-|cation-transport-regulator-ChaB
MPAKEEIPSTIERSDEHAQALWSAAHDSAVDSYGEGERAHRTAFAALKHEYEKVGDHWERKAESGPSDDRAAERGPDGPGDTAGGVDANATKAHLLDLAKRLDVRGRSRMTKAELVDALQRANARETRRARA
>NZ_CP047173.1|WP_159983253.1|432571_433828_-|FAD-binding-protein
MTQRSNWAGTYEYRAADILEPESIDEVQTLVRGSERVRALGTRHSFNALPDTPGTLLHLGRIASDPVIDAEASTVTVGGATRYGIVASHLHSNGYALHNMGSLPHISVAGAISTGTHGSGDRNANLSSAVSALELVTADGSLRTIRRGEPGFEGVVVGLGAFGIVTRVTLDIQPTFDVRQDAFVDLPWDRVLDDFDAITSSAYSVSLMTHWSSPTVEQLWLKTKVEQCSVADVDATHLGAVAASASLFAVSEGVDSNLNPFGGSVGPWSERLPHFRLDREPSAGDEIQSEYMVPRENIREALVALRAIGERIDEVLLITELRTMAGDDQWLSPASGRDSVGIHFTFKKDRAGVDAVLPAVEGALLPLGARPHWGKHFLATAADIAPLYPHLDEWRTLRSAWDPEARFASPFVQDRLLG
>NZ_CP047173.1|WP_159983255.1|433914_434595_-|SDR-family-NAD(P)-dependent-oxidoreductase
MTTTLITGANKSLGLETARRLIEAGHTVHAGMRDPAKGDAARALGAQVVQLDVTDQASVDAALASLPALDVLVNNAGILGTSFGVDDLSAEAMASVLETNVVGIVRVTQAALPLLRRSAAPVIVNVSSGVGWPRALVTPGRDEFGVPAIPYAASKAAVITLTVQYAKNLPEFRINASDPGYTATDFNGHGGHQTVTEGTDATVALALLGPVGPTGEFHDRHGRIEY
>NZ_CP047173.1|WP_159983257.1|434696_435533_+|helix-turn-helix-domain-containing-protein
MSEFADVLRSWRERVTPAEVGLPAGPSRRTAGLRREELAALAGVSVDYIVRLEQGRAVHPSAQLLGALACALRVTEAERDHLYRVAGVAPPTATQVPQHITPGVQRIVDRCGDVPLAVFSAAHDILLWNPLWAALNGDPSRHTGLDRNLVWRYFTQGHEGTEFDDEHAEDFANDLAADLRAAVGRYPDDAALAHLVARLRTTSPDFERRWAVARVAEHRSSRKTVTSTPVGPITIDCDVLAVPGGDLRIVIYTATPGSTDQTRLDLLRVTGLQELVAH
>NZ_CP047173.1|WP_159983259.1|435501_436458_-|EamA-family-transporter
MPLRTRPDLAVDLLLLGVAAVWGASFVAAKDVAADIGVPSTVALRFLTAAAALALLCLVRRERLPRGRGLAVAALLGASQAAIIGLETWGVHLTSATNAGLLISLALVLTPALEGLASRSWLPRSFFVTAVAAVVGVALLVSDGGLRTPTWGDALVLAAAVVRAVHVTASARLVRGRTEGSLGVVLVQLLVCAAVFSLLAGPGLPAAALALDADGWAGVLFLGLLCSVFAFVVQLWAVRRTSAARASILMGTEPVWALLIGVVVAGEAIGTLGAVGAALIVAAGYAGQAIERRHRLGAGTPADRSAEPVSAPRAPAAP
>NZ_CP047173.1|WP_159983261.1|436548_437439_+|LysR-family-transcriptional-regulator
MDPARLRLLRELGDRGSVAAVATALGVSASAVSQQLAALQAGVPVPLTVKEGRRLVLTEAGEALAVAGVRVQQALAAAEETVGAFLRHDDRAVRVSAFHSAGLAFFGPLLAALAGGPRVALADADVAQSRFPGLTADHDLVVAHRLPQDPEWPRGRLVVTPLLVEPLDIALPAGHPLAGLPGIRPEQLADELWVSTHEGFPLTGVLEHLGALIGRAPRVAHRINEFSVAAQVVRSGAAIAILPRITAAPLAVDGMVLRPLEGAGLVRHVDVLARPDALARAAVRTVLAELRRVAAA

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Crispr_ID: NZ_CP047173_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP047173_3

467277-467413

Orphan

Consensus_repeat	Method
GCGTGCCGGAGGTGTTCTCCGTCGGGTTTCGGCTCGCGGAGTCGA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP047173_3

>merge|NZ_CP047173|3|467277-467413|CRISPRCasFinder
GCGTGCCGGAGGTGTTCTCCGTCGGGTTTCGGCTCGCGGAGTCGATTCGGGCTCGTCGGATTCGGGTGTTCCGGCGAGCCGGAGGTGTTTCTGCGTGCCGGAGGTGTTCGCCGTCGGGTTTCGGCTCGCGGAGTCGA

>NZ_CP047173|3|3|467277-467413|CRISPRCasFinder
GCGTGCCGGAGGTGTTCTCCGTCGGGTTTCGGCTCGCGGAGTCGA	TTCGGGCTCGTCGGATTCGGGTGTTCCGGCGAGCCGGAGGTGTTTCT
GCGTGCCGGAGGTGTTCGCCGTCGGGTTTCGGCTCGCGGAGTCGA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP047173.1\|WP_159983310.1\|476630_477266_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP047173.1\|WP_159983297.1\|462567_463689_-\|LPXTG-cell-wall-anchor-domain-containing-protein	unknown	unknown	gnl\|CDD\|235906
NZ_CP047173.1\|WP_159983303.1\|466197_466632_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|237030
NZ_CP047173.1\|WP_159983301.1\|465370_466039_-\|response-regulator	unknown	unknown	gnl\|CDD\|223816
NZ_CP047173.1\|WP_159986584.1\|458186_458927_-\|ABC-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|223472
NZ_CP047173.1\|WP_159983309.1\|474992_476279_-\|M18-family-aminopeptidase	unknown	unknown	gnl\|CDD\|235073
NZ_CP047173.1\|WP_159983291.1\|459101_460019_-\|ABC-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|224096
NZ_CP047173.1\|WP_159983299.1\|463910_465374_-\|HAMP-domain-containing-protein	unknown	unknown	gnl\|CDD\|223715
NZ_CP047173.1\|WP_159983305.1\|470523_471630_-\|Gfo/Idh/MocA-family-oxidoreductase	unknown	unknown	gnl\|CDD\|223745
NZ_CP047173.1\|WP_159983307.1\|472519_473521_+\|substrate-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|224525
NZ_CP047173.1\|WP_159983313.1\|478580_479186_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP047173.1\|WP_159983287.1\|455830_457612_-\|LPXTG-cell-wall-anchor-domain-containing-protein	unknown	unknown	gnl\|CDD\|237030
NZ_CP047173.1\|WP_159983308.1\|473562_474450_-\|alpha/beta-fold-hydrolase	unknown	unknown	gnl\|CDD\|366166
NZ_CP047173.1\|WP_159983315.1\|479848_480154_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP047173.1\|WP_159983293.1\|460018_461299_-\|extracellular-solute-binding-protein	unknown	unknown	gnl\|CDD\|270303
NZ_CP047173.1\|WP_159983317.1\|480150_481662_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP047173.1\|WP_159983306.1\|471626_472424_-\|trehalose-utilization-protein-ThuA	unknown	unknown	gnl\|CDD\|153236
NZ_CP047173.1\|WP_159983311.1\|477255_478350_+\|ImmA/IrrE-family-metallo-endopeptidase	unknown	unknown	gnl\|CDD\|225412
NZ_CP047173.1\|WP_159983289.1\|457858_458182_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP047173.1\|WP_159983295.1\|461391_462348_-\|phosphotransferase	unknown	unknown	gnl\|CDD\|366736

Protein	Function_ID	Function_description	E-value
NZ_CP047173.1\|WP_159983297.1\|462567_463689_-\|LPXTG-cell-wall-anchor-domain-containing-protein	gnl\|CDD\|235906	PRK07003, PRK07003, DNA polymerase III subunit gamma/tau.	2.75823e-07
NZ_CP047173.1\|WP_159983303.1\|466197_466632_+\|hypothetical-protein	gnl\|CDD\|237030	PRK12270, kgd, multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit.	2.28211e-08
NZ_CP047173.1\|WP_159983301.1\|465370_466039_-\|response-regulator	gnl\|CDD\|223816	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription].	7.45424e-73
NZ_CP047173.1\|WP_159986584.1\|458186_458927_-\|ABC-transporter-permease-subunit	gnl\|CDD\|223472	COG0395, UgpE, ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism].	9.51418e-76
NZ_CP047173.1\|WP_159983309.1\|474992_476279_-\|M18-family-aminopeptidase	gnl\|CDD\|235073	PRK02813, PRK02813, putative aminopeptidase 2; Provisional.	0
NZ_CP047173.1\|WP_159983291.1\|459101_460019_-\|ABC-transporter-permease-subunit	gnl\|CDD\|224096	COG1175, UgpA, ABC-type sugar transport systems, permease components [Carbohydrate transport and metabolism].	3.52368e-93
NZ_CP047173.1\|WP_159983299.1\|463910_465374_-\|HAMP-domain-containing-protein	gnl\|CDD\|223715	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms].	2.54741e-44
NZ_CP047173.1\|WP_159983305.1\|470523_471630_-\|Gfo/Idh/MocA-family-oxidoreductase	gnl\|CDD\|223745	COG0673, MviM, Predicted dehydrogenases and related proteins [General function prediction only].	9.70673e-43
NZ_CP047173.1\|WP_159983287.1\|455830_457612_-\|LPXTG-cell-wall-anchor-domain-containing-protein	gnl\|CDD\|237030	PRK12270, kgd, multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit.	2.20385e-07
NZ_CP047173.1\|WP_159983308.1\|473562_474450_-\|alpha/beta-fold-hydrolase	gnl\|CDD\|366166	pfam00561, Abhydrolase_1, alpha/beta hydrolase fold. This catalytic domain is found in a very wide range of enzymes.	1.32615e-23
NZ_CP047173.1\|WP_159983293.1\|460018_461299_-\|extracellular-solute-binding-protein	gnl\|CDD\|270303	cd13585, PBP2_TMBP_like, The periplasmic-binding component of ABC transport systems specific for trehalose/maltose and similar oligosaccharides; possess type 2 periplasmic binding fold. This family includes the periplasmic trehalose/maltose-binding component of an ABC transport system and related proteins from archaea and bacteria. Members of this group belong to the type 2 periplasmic-binding fold superfamily. PBP2 is comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. The majority of PBP2 proteins function in the uptake of small soluble substrates in eubacteria and archaea. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	2.89102e-75
NZ_CP047173.1\|WP_159983307.1\|472519_473521_+\|substrate-binding-domain-containing-protein	gnl\|CDD\|224525	COG1609, PurR, Transcriptional regulators [Transcription].	5.70764e-65
NZ_CP047173.1\|WP_159983311.1\|477255_478350_+\|ImmA/IrrE-family-metallo-endopeptidase	gnl\|CDD\|225412	COG2856, COG2856, Predicted Zn peptidase [Amino acid transport and metabolism].	2.96145e-27
NZ_CP047173.1\|WP_159983306.1\|471626_472424_-\|trehalose-utilization-protein-ThuA	gnl\|CDD\|153236	cd03142, GATase1_ThuA, Type 1 glutamine amidotransferase (GATase1)-like domain found in Sinorhizobium meliloti Rm1021 ThuA (SmThuA). Type 1 glutamine amidotransferase (GATase1)-like domain found in Sinorhizobium meliloti Rm1021 ThuA (SmThuA). This group includes proteins similar to SmThuA which plays a role in a major pathway for trehalose catabolism. SmThuA is induced by trehalose but not by related structurally similar disaccharides like sucrose or maltose. Proteins in this group lack the catalytic triad of typical GATase1 domains: a His replaces the reactive Cys found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. S. meliloti Rm1021 thuA mutants are impaired in competitive colonization of Medicago sativa roots but are more competitive than the wild-type Rml021 in infecting alfalfa roots and forming nitrogen-fixing nodules.	6.81125e-131
NZ_CP047173.1\|WP_159983295.1\|461391_462348_-\|phosphotransferase	gnl\|CDD\|366736	pfam01636, APH, Phosphotransferase enzyme family. This family consists of bacterial antibiotic resistance proteins, which confer resistance to various aminoglycosides they include: aminoglycoside 3'-phosphotransferase or kanamycin kinase / neomycin-kanamycin phosphotransferase and streptomycin 3''-kinase or streptomycin 3''-phosphotransferase. The aminoglycoside phosphotransferases inactivate aminoglycoside antibiotics via phosphorylation. This family also includes homoserine kinase. This family is related to fructosamine kinase pfam03881.	1.17489e-10

>NZ_CP047173.1|WP_159983303.1|466197_466632_+|hypothetical-protein
MSKTPDSTPGTQGSGFGPRRPRTRAIALCIAAGALGFAAIGSTAAFADSAPTSGSTSSSSSSTIETTPSATASATPTPDSSDAPTLTGPASTGPAACGPAGAGLPKPPAPGADGSMPTPPAAPAEGEAPTPPADGSMPTRPRPR
>NZ_CP047173.1|WP_159983301.1|465370_466039_-|response-regulator
MLPSARVLLVEDDDAIRSSVEAALRGERYTVRALPSGEDLARELADFAPDLVVLDWMLPGPSGIVLAERIRRSSDAAVIMLTARDAVDDRLRGFDEGVDDYVVKPFVLAELVARVTAVLRRRGRVPSIIEIGDLVVDPDSGRARRGGAPLDLTATEFRLLAFLAGSRGRTLTKTQILTQVWGYDHVDPNLVEVHLSSLRKKMEAHGDRLIHTVRGLGYRVEA
>NZ_CP047173.1|WP_159983299.1|463910_465374_-|HAMP-domain-containing-protein
MTVSPAPSAPLRTGSLRLRTVLAVLALLAVLLLALSATVQVVLGERLRDQIEERLADRASAAAALVGTIPDDELASRLSAQGVAVRIESPDGEAVVAGPSPDQLRQGPGAADQLGEPPSPPGSGISSTAATPRDATVTVTASTVSGDDQLITLQSTLSDGTELTLTSEASSVGSTLSSLNGILLGASAAFLLLAAAALVLVVRATLRPLERMTTVARSIAHGDRGRRLRPSRPGTELGRTATAFDEMLDDLEQAEQSALAAERRMRAFVSDAAHELRTPVAGIQAAADALVRADGTAEERERLSVHVVRESLRAGRLIQDMLLMARLDEGLALDARPLDAGAVAAAAIERQLLRGEGPAIVLHRDDAAPPAHADADRLGQIIGNLLENAARFARSRIDVTLAHTDDRVTVTVDDDGPGVPEADRDRVFDRLVRLDDARNRADGGSGLGLPIARGLARALGGDLVCLPGAAGARFRVLLPAASAQNIG
>NZ_CP047173.1|WP_159983297.1|462567_463689_-|LPXTG-cell-wall-anchor-domain-containing-protein
MPPHHQRPQSQRPQHQRPQSSRRGLGVPCTVAASLALTVGLLGAASAAHAVEPGAPAAAQSTPAADAAAPSVSVTFSAEFTWRTNEPLDSTGPVSMTVRFANTGSVPFLSGGTPATEGAFTVAPGETRSFSFHVASVSELLSKLSSLASIAAPTSATASPAATSTPATASAPAAAAAAAAAGTDAPTVRVEFTGDFTVTSTGAPKAGTVPTFTVTLTNIGTTPVVDAAVPGTSDSFTLAPGETKTFTFGIDSAGDLVSATVPPAPEPQPSPAPATPTPSEPTATPSSPAVADGPTDPAQTVAAAESAPAPAGSTAPAASTASAPTTSYARNVSSTRLAETGPDTAGAVPAAGILALLGSLGVFLGRRRTRTAD
>NZ_CP047173.1|WP_159983295.1|461391_462348_-|phosphotransferase
MDTIDERSAWARSVVERDFGVRLVDFLPIIGGLDHGAQVWFATDDTGAPWSLKASQRDGRFGLALAAALGDAQVTGIAAPHRARDGRPWTEDSGLLLSLAPWIVGDDAVDSGEDALSWSEFGAVLRAVHDSEPPAGAVPPRRGIRRAQRPPAELLAEVDEHLAPDTRDRLHALARAERRLKRTRTPTARVPVHGDPHPGNVVIDGQRHPWLIDFDEAAIAPREVDLHLVELGVIYSRPITDAQRRAFRAGYGESLIDDERIIRFGCVRAIEDAASTVLRALDPAQQEQHHELLAGQLGPHGLVSLVETALDRLGRPAA
>NZ_CP047173.1|WP_159983293.1|460018_461299_-|extracellular-solute-binding-protein
MRRRLLPLAALAASTLALTACSGFGGGGGSSADGDSITFTTWASESEQAAFESLISDFEAANDGVSVELNAVPYDQMFSNIDAQLSSGEAPDVFRVDYGNLGVYSSQGQLLDLTDRIPEFDSFTPAFQEAVSFEGTPYGVPHQTDVSALLVNTELLAAAGVTDIPTTAADAWTWEEFADVSAKLRASLPAEQYPFAANWQLGGTPRWLSWLFEADGALLEEDGTTPAIDSEAGAKALDFTKSFFENGWVPPTSSVKSATYADAFFTEQSVAMSFVGSFLVPDVDNLADFEWAATPMPVDERGATDLGGNALVATADSDNPELAAEFLAFMTEADNMAAFCAATNELPTRTDIDPASIDFAVRPDVMPVFVEQAATITPRDVQQLTSPFLAQISVAMQDQLEEAFVNGRSTEETLTGLSDAIAQATS
>NZ_CP047173.1|WP_159983291.1|459101_460019_-|ABC-transporter-permease-subunit
MTAVPLRGSPPRRRRTARTREALAGFGFVGPNLLLMALFLFVPILWAIQLSFQESRGFGTPEWVGLANYARMGADPVFWQSLGNTLLFTAVTVPLELLGGLGLAVLLNSVLPARGIFRTIIVLPLVISGVASGMIAVTIFSESSGIVNKVLSSLGASPVSWQSDGAAAMISVMLTAVWLRIGFNMVIYIAGLQGVSPELYEAARIDGATRWQQFRSLTVPLVGPSTFFLLIMNVIASFQVFDIVFVMTGGGPGFSTSVLGTYAYRNGFQVREQGYGAALGVVILLVSLAFTYLQWRTSRTRDLVE
>NZ_CP047173.1|WP_159986584.1|458186_458927_-|ABC-transporter-permease-subunit
MLVIAFSPRGEVFSPGPPQFWPSEISLENFATVFARFPVAEWFVNSVVVGAFVTAFTVVLNLLAGWGFARLRFPGRNLLFLLALATMMIPVQAIMVAQFKLVTGLQIYGTYWSVILPGAAAAFGIFLARQFFLSIPEELIEAARIDGAGHLRVFLQIVLPLSKPLIAVLILLTLLGSWNDFAWPLIALKDNELFTLPIGLLYLKGQSTPDYSASMALALVSVLPMVLLFLAFQRYFVQGFARSGIR
>NZ_CP047173.1|WP_159983289.1|457858_458182_+|hypothetical-protein
MAEDAGVAGAADGTGVADGDGDGDADCDGMADGTASAALAGVAEASRPMVSARDAATVRGVPAQRRRRKDSGTEDSWYWWESGRTKVASPESTHRTSGAARVRWRDS
>NZ_CP047173.1|WP_159983287.1|455830_457612_-|LPXTG-cell-wall-anchor-domain-containing-protein
MTTSARGEIMLKPGEQVKRGTTVTWTVTVTNTGDVPLHNVSVEGKSKTIDLAVGEVKTVSVTTQVDGFDVDELHVTFLSETAVGTSPQGTELRDDVHGRIELPVQQPQPAPAPAPAPTPVPSTPAAPSTPAPTPAPAPAPAPAPAATPVTATVVGTLDLKPGEPLKVGTTVTWVVTFHHQTRDTVKILPTTLELAPGYNGYVADTTKPGRITQADLDAGVVKYESEFTAEGPTGRYQIPAKGELRLAPAVGEHPALSGTLRGALDLEPGEKPQAGTTVKWTATLTNTGDVALHDVGVPDSKDRITLAPKETKDVTFLTTLRQDEVDSGRSRRNVTATGLSPAETPVTYSLGSSFDFPTGRPAPTPAPSPTPTPAPTPAPTPAPAPAEHPAIAGTLSGMLDLKPGEQPKVGTEVTWTATLTNTGDLEIDDIDLDDSGESIDLGPGETGELTTTTTLTQAELDKHTAALTTTATGETEDGELISTDLTGTFALPTPAPVPATPLTPSTPGPATPLTPSTPAPVPATPLTPAPLPATAVTAAKYPALPVTPQASAHHLAQTGADSAGLLTAASLLTALGALGVLGGRRRRRNRTAD
>NZ_CP047173.1|WP_159983305.1|470523_471630_-|Gfo/Idh/MocA-family-oxidoreductase
MTVRLVQVGAGAMGRAWIRTVRDSPDAELVGLVDLDVELAERAAEEEGVGSIAVGASVAEVAARSGADAVVNVTVPRAHLPVSSEALFAGLPVLSEKPIAPTIAESLILAATAEVSGKLLMVSQSRRYYPAIAAFREQVAGLGELGTASITFAKAPHFGGFREEMPHVLLVDMAIHAFDAARYVLDRDPVAVYCEEYDPGWSWYADGAAASAVFEFEGGVRLGYTGSWCADGLETSWNGDWRVNGAGGTAHWDGDGAPTWQARESEAVQTATLEPGPQEIAGSLAEFVRVLGSGAVPSGEVHANVRSLAMVEAAVRSSESGARVRIDDVLEEGYAEALGLARDERVRAALAAWGSAAAGLAARRQPVE
>NZ_CP047173.1|WP_159983306.1|471626_472424_-|trehalose-utilization-protein-ThuA
MKKDLSVTTPPPALRVLIWGENRHEQIEEKVRALYPDGMHTTIAAGITENLGERATVSTTTLDEPEHGLTEEVLAATDVLVWWGHMAHDAVADEIVERVHRHVLSGMGLVVLHSGHWSKIFGKLMGTTCTLRWRSAEDREIVWTVDPTHPIAQGVPHPFTIPQQEMYGEFFDVPAPDELVFLSTFSGGEVFRSGMTWKRGHGRIFFFSPGDQDFPVYHHPDVRRVIANGVEWARSDRPARSLPVLQRYESGEFFAGEDYRGALVR
>NZ_CP047173.1|WP_159983307.1|472519_473521_+|substrate-binding-domain-containing-protein
MATMQDVARRAGVSIATVSFVVNASKPVSPETAARVREAMRELDYRPHALARALARRRSMMIAVVYPLVPSRPLNTATAFLAGAAEAAAENGYSMVLWPTAGGSEKLADLRADGLLDGVVLMQVTSEDERVAILSDSGTPFALIGRTRDPAALDWVDIDFEGMVAQALDRLAALGHRRVALVLGPEGGADFGPYARTQAAFEQEAAARDLEASLLRCEETPAGGRALARSLDPEAATAVVVINGGAAVGFAHELRHRGVRVPEDLSIVLLASDPDVADLADPALDLLVAPGHALGRRGVEALLARLADPAAVPVQERIGGPWRPGGSVAAPAR
>NZ_CP047173.1|WP_159983308.1|473562_474450_-|alpha/beta-fold-hydrolase
MDDADDSRHWTDLDVAVRGGRLAAQSLGAATDPALLLLGGATWSRDWWADDFCDRLADLGVRVLRYDPRDTGASTASPPGRPDYTAADLADDAIAVLDAVGVRSATLAGLSMGGGLAQSIAAHHPDRVDALVLLSTSPAGDVERELPPPTAAILATFEEAGADPDWTDRRSVVDWVVRSERPYAGPDAFDEEALREIAGRVWDRSPSMASAANHFLVAEGATPIDLGALRDVPALVVHGSADPLFPPAHGEALAAALGARLIVLDGVGHQAPPPATWAEIVPAIAAHAREHAARP
>NZ_CP047173.1|WP_159983309.1|474992_476279_-|M18-family-aminopeptidase
MTSRADHLADFAEFLTASPSSFHAAAETARRLAAAGFASVDESAAWPTEPGRYYVLRDGAIIAWHLPAAATAVAPFRILGAHTDSPGFKLKPRPTIESKGWLQAGVEVYGGPLLNSWLDRELELAGRIVTRDGAEVLVRTGPFLRIPQLAIHLDRDANDGLKLDRQKHTVPVYGLGDADGNDLLEILAARAGLDGAADIAGYDLITADTQPPARFGLDEALFAAGRMDDLSSVHAGLVALLAASAEDAAAPHISMLAAFDHEELGSASRSGASGPFLEDVLTRIGAALGAGVDERARAMAGSWCLSADAGHSVHPNYPEKHDPVNQPVAGKGPLLKINASQRYATDARGAALWAGVCARAGVEFQEFVSNNTVPCGSTIGPLTATRLGISTVDVGVPLLSMHSARELAHVDDLVALTRAIEEFFSAAG
>NZ_CP047173.1|WP_159983310.1|476630_477266_+|hypothetical-protein
MTLAERLEISDVVQQAIVEGAREGHGVALAHDSDPGANPYTFGNDRYHRSCELIKQRFESFGLTPHMEGAGHRARARNYELWFSTARSIDVTDRSSFDFTSETKMEAGTANMAAYLPGMDHDSVPGREIVHVVLSGNNEQGLTAVHLGRLISVGSRYVTWADDLQRIDNIITQDAVATTEVTTTATSYLDQPEPPIPLEAVPAADVASDAE
>NZ_CP047173.1|WP_159983311.1|477255_478350_+|ImmA/IrrE-family-metallo-endopeptidase
MRSRSHLDPQNFSRERLRLARLRAGLNLRELADRVGVSHAAISQYESGRARPGNAVLGQLAIACGVPPRFLTHSGRPVSLAGLDGTHFRSLRSTTKQSRGRAWTWSEIVLDVADALERYVRLPTLDFPSHTLAEDATRDDIRDAAEHLRAHWALPDGPVGHLVRHMEAHGIVVCRLPIADEGIDAYSQNSSDRPVVILGTTKDDAARSRFDAAHELGHLVCHPEADSSGRHEKQAHAFAAELLLPEAAMRQALPRRFNLNSYARLKQEWGVSIQALLYRARTLEVISDAAYRRAIVDFNSTYGRRNEPFPLTRPDDPTLLANAAAVAERSGITPAELADVANLALSDVETVIAGAAARPLVAPS
>NZ_CP047173.1|WP_159983313.1|478580_479186_-|hypothetical-protein
MTAIVPLNDLVTAAVHTLSGERWAITGAGGRVPARPGLYAIYGDDQTWARLALEAAFGRPLFVGKAEDSLVSRDPNGHFAMNPRSKPQTGSSTVRRSFAALLRASLQLEAVPRNLANPERFANYALAPGGDERLTLWMHTRLTLAAWPVPVCMPVPLKEVETAVIEHLTPPLNIDKNPRRLARLSRARAEMAAEASRWRPT
>NZ_CP047173.1|WP_159983315.1|479848_480154_+|hypothetical-protein
MTGKLRYRDRHQAVDALNSTRRQRAYELAHFGSSTREETRIYRCADSGEGGCGGFHATSIPSSVRRGAAAAVTLQTPEAVSAAIHIMARASGLLGVGEVAA
>NZ_CP047173.1|WP_159983317.1|480150_481662_+|hypothetical-protein
MSRGDGTARRLTLRGHSLRSINATVSADQTLTGDIERTVPPVEGANVSAASAALGLRTMATARTRAGRSAAQASRKAESWRKAVQIRSDFNDRVDRKLKHPRTATRLSDALQYDVRSAGVAYLASWLPGIVVVGLALVMVSNDPPFVAATIRRALDIPESTPLWDVANPDILVTLASAAGITLILLGVAHLLGKSIASVLFLDPLLARQDDFPEAVRAREVLPRGRALIVVGAGAAVMTGAVLFLHTIAEQRFEGGIMAAFTGSSTTSAAITAYVTWLPVALVFLEVIASHPIFHHARKAARWSLGFRLTEAHDVRRDRRLARKVATVGRRARIGIARLGDMLGDVTLRSQGEVIEAALRTGKVSVADVATVLGVGATATSTDPSTSTDPKIDLTGTVNTGLQKTAVVSNRAAEAMASFLSVNAIKDLAGVATLWTDAREAATPSDFTLRSNFGASAHEGDGVNDEDGNSSLTQETDAREPAIPDLPRTSTTKTTTDTADAAA

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Crispr_ID: NZ_CP047173_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP047173_4

902782-902924

Orphan

Consensus_repeat	Method
TGCTGGTCGAGTAGCCCGCGCAGCGGGCGTATCGAGACCCAC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP047173_4

>merge|NZ_CP047173|4|902782-902924|CRISPRCasFinder
TGCTGGTCGAGTAGCCCGCGCAGCGGGCGTATCGAGACCCACGTCCCCAGCACATGCGGGAGCACGGCGGCCTCGCTCCGCTTCGCACCCCACGCCTCCCCTGCTGGTCGAGTAGCCCGCGCAGCGGGCGTATCGAGACCCAC

>NZ_CP047173|4|4|902782-902924|CRISPRCasFinder
TGCTGGTCGAGTAGCCCGCGCAGCGGGCGTATCGAGACCCAC	GTCCCCAGCACATGCGGGAGCACGGCGGCCTCGCTCCGCTTCGCACCCCACGCCTCCCC
TGCTGGTCGAGTAGCCCGCGCAGCGGGCGTATCGAGACCCAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP047173.1\|WP_159986631.1\|913978_914359_-\|MarR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224759
NZ_CP047173.1\|WP_159983911.1\|891687_894174_-\|family-78-glycoside-hydrolase-catalytic-domain	unknown	unknown	gnl\|CDD\|379971
NZ_CP047173.1\|WP_159986630.1\|911760_912363_+\|serine-O-acetyltransferase	unknown	unknown	gnl\|CDD\|223975
NZ_CP047173.1\|WP_159983921.1\|903999_904815_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|236940
NZ_CP047173.1\|WP_159983922.1\|904811_905408_-\|sigma-70-family-RNA-polymerase-sigma-factor	unknown	unknown	gnl\|CDD\|274357
NZ_CP047173.1\|WP_159983926.1\|912423_913893_-\|deoxyribodipyrimidine-photo-lyase	unknown	unknown	gnl\|CDD\|223492
NZ_CP047173.1\|WP_159983923.1\|905499_907839_-\|PASTA-domain-containing-protein	unknown	unknown	gnl\|CDD\|223815
NZ_CP047173.1\|WP_167306093.1\|896099_896909_-\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|235546
NZ_CP047173.1\|WP_159983912.1\|894651_895641_+\|substrate-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|224525
NZ_CP047173.1\|WP_159983924.1\|908046_910491_-\|PASTA-domain-containing-protein	unknown	unknown	gnl\|CDD\|223815
NZ_CP047173.1\|WP_159983919.1\|901037_902612_+\|aldehyde-dehydrogenase-family-protein	unknown	unknown	gnl\|CDD\|143434
NZ_CP047173.1\|WP_159983915.1\|897077_897686_+\|glyoxalase/bleomycin-resistance/dioxygenase-family-protein	unknown	unknown	gnl\|CDD\|319968
NZ_CP047173.1\|WP_159983925.1\|910828_911764_+\|cysteine-synthase-A	unknown	unknown	gnl\|CDD\|273463
NZ_CP047173.1\|WP_159983920.1\|902959_903358_+\|DUF779-domain-containing-protein	unknown	unknown	gnl\|CDD\|377532
NZ_CP047173.1\|WP_159983917.1\|898699_899644_+\|EamA-family-transporter	unknown	unknown	gnl\|CDD\|273359
NZ_CP047173.1\|WP_159983916.1\|897737_898580_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|153097
NZ_CP047173.1\|WP_159983913.1\|895771_895876_-\|PTS-transporter-subunit-EIIB	unknown	unknown	gnl\|CDD\|273919
NZ_CP047173.1\|WP_159983918.1\|899701_900928_+\|transcriptional-regulator	unknown	unknown	gnl\|CDD\|225822
NZ_CP047173.1\|WP_159986629.1\|903449_903932_+\|DUF4396-domain-containing-protein	unknown	unknown	gnl\|CDD\|379568
NZ_CP047173.1\|WP_159983910.1\|889378_890713_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|340883

Protein	Function_ID	Function_description	E-value
NZ_CP047173.1\|WP_159986631.1\|913978_914359_-\|MarR-family-transcriptional-regulator	gnl\|CDD\|224759	COG1846, MarR, Transcriptional regulators [Transcription].	2.98829e-10
NZ_CP047173.1\|WP_159983911.1\|891687_894174_-\|family-78-glycoside-hydrolase-catalytic-domain	gnl\|CDD\|379971	pfam17389, Bac_rhamnosid6H, Bacterial alpha-L-rhamnosidase 6 hairpin glycosidase domain. This family consists of bacterial rhamnosidase A and B enzymes. L-Rhamnose is abundant in biomass as a common constituent of glycolipids and glycosides, such as plant pigments, pectic polysaccharides, gums or biosurfactants. Some rhamnosides are important bioactive compounds. For example, terpenyl glycosides, the glycosidic precursor of aromatic terpenoids, act as important flavouring substances in grapes. Other rhamnosides act as cytotoxic rhamnosylated terpenoids, as signal substances in plants or play a role in the antigenicity of pathogenic bacteria.	1.56965e-132
NZ_CP047173.1\|WP_159986630.1\|911760_912363_+\|serine-O-acetyltransferase	gnl\|CDD\|223975	COG1045, CysE, Serine acetyltransferase [Amino acid transport and metabolism].	1.47028e-77
NZ_CP047173.1\|WP_159983921.1\|903999_904815_-\|hypothetical-protein	gnl\|CDD\|236940	PRK11633, PRK11633, cell division protein DedD; Provisional.	0.00080762
NZ_CP047173.1\|WP_159983922.1\|904811_905408_-\|sigma-70-family-RNA-polymerase-sigma-factor	gnl\|CDD\|274357	TIGR02937, RNA_polymerase_sigma_factor, RNA polymerase sigma factor, sigma-70 family. This model encompasses all varieties of the sigma-70 type sigma factors including the ECF subfamily. A number of sigma factors have names with a different number than 70 (i.e. sigma-38), but in fact, all except for the Sigma-54 family (TIGR02395) are included within this family. Several Pfam models hit segments of these sequences including Sigma-70 region 2 (pfam04542) and Sigma-70, region 4 (pfam04545), but not always above their respective trusted cutoffs.	8.08172e-27
NZ_CP047173.1\|WP_159983926.1\|912423_913893_-\|deoxyribodipyrimidine-photo-lyase	gnl\|CDD\|223492	COG0415, PhrB, Deoxyribodipyrimidine photolyase [DNA replication, recombination, and repair].	9.59246e-178
NZ_CP047173.1\|WP_159983923.1\|905499_907839_-\|PASTA-domain-containing-protein	gnl\|CDD\|223815	COG0744, MrcB, Membrane carboxypeptidase (penicillin-binding protein) [Cell envelope biogenesis, outer membrane].	1.82505e-90
NZ_CP047173.1\|WP_167306093.1\|896099_896909_-\|SDR-family-oxidoreductase	gnl\|CDD\|235546	PRK05653, fabG, 3-oxoacyl-ACP reductase FabG.	5.73588e-63
NZ_CP047173.1\|WP_159983912.1\|894651_895641_+\|substrate-binding-domain-containing-protein	gnl\|CDD\|224525	COG1609, PurR, Transcriptional regulators [Transcription].	1.50472e-34
NZ_CP047173.1\|WP_159983924.1\|908046_910491_-\|PASTA-domain-containing-protein	gnl\|CDD\|223815	COG0744, MrcB, Membrane carboxypeptidase (penicillin-binding protein) [Cell envelope biogenesis, outer membrane].	6.37256e-102
NZ_CP047173.1\|WP_159983919.1\|901037_902612_+\|aldehyde-dehydrogenase-family-protein	gnl\|CDD\|143434	cd07116, ALDH_ACDHII-AcoD, Ralstonia eutrophus NAD+-dependent acetaldehyde dehydrogenase II-like. Included in this CD is the NAD+-dependent, acetaldehyde dehydrogenase II (AcDHII, AcoD, EC=1.2.1.3) from Ralstonia (Alcaligenes) eutrophus H16 involved in the catabolism of acetoin and ethanol, and similar proteins, such as, the dimeric dihydrolipoamide dehydrogenase of the acetoin dehydrogenase enzyme system of Klebsiella pneumonia. Also included are sequences similar to the NAD+-dependent chloroacetaldehyde dehydrogenases (AldA and AldB) of Xanthobacter autotrophicus GJ10 which are involved in the degradation of 1,2-dichloroethane. These proteins apparently require RpoN factors for expression.	0
NZ_CP047173.1\|WP_159983915.1\|897077_897686_+\|glyoxalase/bleomycin-resistance/dioxygenase-family-protein	gnl\|CDD\|319968	cd16361, VOC_ShValD_like, vicinal oxygen chelate (VOC) family protein similar to Streptomyces hygroscopicus ValD protein. This subfamily of vicinal oxygen chelate (VOC) family protein includes Streptomyces hygroscopicus ValD protein and similar proteins. ValD protein functions in validamycin biosynthetic pathway. The vicinal oxygen chelate (VOC) superfamily is composed of structurally related proteins with paired beta.alpha.beta.beta.beta motifs that provide a metal coordination environment with two or three open or readily accessible coordination sites to promote direct electrophilic participation of the metal ion in catalysis. VOC domain is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.	7.2082e-14
NZ_CP047173.1\|WP_159983925.1\|910828_911764_+\|cysteine-synthase-A	gnl\|CDD\|273463	TIGR01136, Cysteine_synthase, cysteine synthase. This model discriminates cysteine synthases (EC 2.5.1.47) (both CysK and CysM) from cystathionine beta-synthase, a protein found primarily in eukaryotes and carrying a C-terminal CBS domain lacking from this protein. Bacterial proteins lacking the CBS domain but otherwise showing resemblamnce to cystathionine beta-synthases and considerable phylogenetic distance from known cysteine synthases were excluded from the seed and score below the trusted cutoff. [Amino acid biosynthesis, Serine family].	3.10378e-163
NZ_CP047173.1\|WP_159983920.1\|902959_903358_+\|DUF779-domain-containing-protein	gnl\|CDD\|377532	pfam05610, DUF779, Protein of unknown function (DUF779). This family consists of several bacterial proteins of unknown function.	7.67145e-59
NZ_CP047173.1\|WP_159983917.1\|898699_899644_+\|EamA-family-transporter	gnl\|CDD\|273359	TIGR00950, Uncharacterized_inner_membrane_transporter_YicL, Carboxylate/Amino Acid/Amine Transporter. [Transport and binding proteins, Amino acids, peptides and amines].	4.45761e-20
NZ_CP047173.1\|WP_159983916.1\|897737_898580_-\|hypothetical-protein	gnl\|CDD\|153097	cd00657, Ferritin_like, Ferritin-like superfamily of diiron-containing four-helix-bundle proteins. Ferritin-like, diiron-carboxylate proteins participate in a range of functions including iron regulation, mono-oxygenation, and reactive radical production. These proteins are characterized by the fact that they catalyze dioxygen-dependent oxidation-hydroxylation reactions within diiron centers; one exception is manganese catalase, which catalyzes peroxide-dependent oxidation-reduction within a dimanganese center. Diiron-carboxylate proteins are further characterized by the presence of duplicate metal ligands, glutamates and histidines (ExxH) and two additional glutamates within a four-helix bundle. Outside of these conserved residues there is little obvious homology. Members include bacterioferritin, ferritin, rubrerythrin, aromatic and alkene monooxygenase hydroxylases (AAMH), ribonucleotide reductase R2 (RNRR2), acyl-ACP-desaturases (Acyl_ACP_Desat), manganese (Mn) catalases, demethoxyubiquinone hydroxylases (DMQH), DNA protecting proteins (DPS), and ubiquinol oxidases (AOX), and the aerobic cyclase system, Fe-containing subunit (ACSF).	0.000321603
NZ_CP047173.1\|WP_159983913.1\|895771_895876_-\|PTS-transporter-subunit-EIIB	gnl\|CDD\|273919	TIGR01995, beta-glucosides_PTS_EIIBCA, PTS system, beta-glucoside-specific IIABC component. This model represents a family of PTS enzyme II proteins in which all three domains are found in the same polypeptide chain and which appear to have a broad specificity for beta-glucosides including salicin (beta-D-glucose-1-salicylate) and arbutin (Hydroquinone-O-beta-D-glucopyranoside). These are distinct from the closely related sucrose-specific and trehalose-specific PTS transporters.	3.45381e-05
NZ_CP047173.1\|WP_159983918.1\|899701_900928_+\|transcriptional-regulator	gnl\|CDD\|225822	COG3284, AcoR, Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription].	2.96875e-25
NZ_CP047173.1\|WP_159986629.1\|903449_903932_+\|DUF4396-domain-containing-protein	gnl\|CDD\|379568	pfam14342, DUF4396, Domain of unknown function (DUF4396). This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria, archaea and eukaryotes. Proteins in this family are typically between 167 and 310 amino acids in length.	7.80788e-42
NZ_CP047173.1\|WP_159983910.1\|889378_890713_+\|MFS-transporter	gnl\|CDD\|340883	cd17325, MFS_MdtG_SLC18_like, bacterial MdtG-like and eukaryotic solute carrier 18 (SLC18) family of the Major Facilitator Superfamily of transporters. This family is composed of eukaryotic solute carrier 18 (SLC18) family transporters and related bacterial multidrug resistance (MDR) transporters including several proteins from Escherichia coli such as multidrug resistance protein MdtG, from Bacillus subtilis such as multidrug resistance proteins 1 (Bmr1) and 2 (Bmr2), and from Staphylococcus aureus such as quinolone resistance protein NorA. The family also includes Escherichia coli arabinose efflux transporters YfcJ and YhhS. MDR transporters are drug/H+ antiporters (DHA) that mediate the efflux of a variety of drugs and toxic compounds, and confer resistance to these compounds. The SLC18 transporter family includes vesicular monoamine transporters (VAT1 and VAT2), vesicular acetylcholine transporter (VAChT), and SLC18B1, which is proposed to be a vesicular polyamine transporter (VPAT). The MdtG/SLC18 family belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	7.08606e-26

>NZ_CP047173.1|WP_159983919.1|901037_902612_+|aldehyde-dehydrogenase-family-protein
MTLYADPVAEQAPQEPESTVYANPGTEGSVASFRSRYDHYIGGEYVAPAKGQYFENITPITGKPFCEIARGTAEDIDRAVEAGWKAFASWGKTSPAERSNMLLKIADRMEANLELLAVAETWENGKPVRETLAADIPLAIDHFRYFAGAIRAQEGGVSEIDHDTIAYHFHEPLGVVGQIIPWNFPILMAVWKLAPALAAGNCVVLKPAEQTPASIHVLLDLIGDLIPAGVLNVVNGFGFEAGAPLASHPRIRKIAFTGETTTGRLIMQYASENLIPVTLELGGKSPNVFFADVAAERDSFYDKALEGFSFFALNQGEVCTCPSRALVQKSIYDDFVGDGLERVGRIKQGNPLDVSTMIGAQASNDQLEKILSYMDIGKQEGAKLLIGGDRADLGGELSGGYYVNPTVFEGRNSMRIFQEEIFGPVLALTSFEDFDDGISIANDTLYGLGAGVWSRNGAQLYRAGRAIEAGRVWSNTYHQYPAHAAFGGYKQSGIGRENHKVMLDHYQQTKNLLVSYAEGPMGFF
>NZ_CP047173.1|WP_159983918.1|899701_900928_+|transcriptional-regulator
MTNPWLALPGSGRRRPLVEASWERARRHRLDPERLTAPLSFSSDELRDYRMGHPLASVLPVIRRLLVRDADEDSGVLVAVGDALGRLLWIDGDQQLKSSAERMLFVEGAAWAEPDVGTSAPGTALVLDHGVQIHGAEHFASLVHPWSCTAVPIHDPETHEILGVIDITGGAEVVAPQTLPLMEATAAAVESQLMVQRLQRPRRSHPRPAAARAPSLRVLGRETGVVTAGGVELELSTRHAEILTLLAWHRAGLSAEALAHLLYGREDAVVTVRAEMVRLRKLLEPRLPRLVPLSRPYRLASPVDLDARQVVGLLDRGAHRLALDAYAGAPLPGSDAPGIRAIADELRGRVRATVLTSAAAETLLAYAHGPDGRDDAEVWAELLRILPRRSPRRAGIVAHLEELEAEQR
>NZ_CP047173.1|WP_159983917.1|898699_899644_+|EamA-family-transporter
MGSRGSAIVAIVLAAVCFGTTGTAQSLGAADVDPLLLGAARIVLGGTLLAALLGVETARAPRRATRRPRGSTVLLVLLGAAGVAAYQPAFFTGTAENGVAVGTIVALGSAPAFTGLLEWLVLRTAPSPRWFVSTALAAVGVVLLAGLLTGGGAGGVSVLGLAGSAGAGAAYALYAVCGKLLLERGFSPAAAMGAQFGAAALLALPVLLAGDPGQLAGSIPAVLWLGVVTVAVAYTFFARGLRILPAATVSTLTLVEPATATLLGVALLGERLTPDALVGIVVLVLAVLLLALPARRGSARRAVIAPETPSSRAE
>NZ_CP047173.1|WP_159983916.1|897737_898580_-|hypothetical-protein
MGIAEPFDVESYRRSAHGSLHDHFSIREFEETPLDREAIVAAAYLRALEHAAIARVLPLARAHPDPRVRTFATSWAAERHRIADALGEVLAASPRIRGVDTGPAEPIAAPKVLRDRASRLLAGPIALALAVDAQIALHAYRRLARLSLHPEMERLAETVAGILERHADFFGELAADSIGRPLRRRIVAAGVLAAVRLPVGESALPEELAREGRELVFGRDDGGLDGIDAGVVAGYALPCTAARRLLQPHRTLPLRAAVQAGRLGADVVAGVRELRSLIAE
>NZ_CP047173.1|WP_159983915.1|897077_897686_+|glyoxalase/bleomycin-resistance/dioxygenase-family-protein
MTSPLVSAVAHSGLTVTDLDDSVELWCSGLGFTLERAFTLDADTTVATTGVDGATIRGAVVTLGDHRVELLQDDPPRPARAAGSPADIGTVHIALTVSDLDRVLGLCATHGWRPVGPPHRMTSGARAGTRIVYLEGALGGFLELIAPPRRPYRGPARSLTESAFSNLGNKELPTLAGAPAPQRRPAPPDPEEASSEAHPSDC
>NZ_CP047173.1|WP_167306093.1|896099_896909_-|SDR-family-oxidoreductase
MPRSRPLPKRRDTVTDSSDIAIVTGAGSAEGIGAATALLLGRNGMRVVVTSTTERIQDRVADLRRAGIDAHGVVADLTGQLGVDAVLEATRRAFGEPTVLVNNAGMTSVSTTDSPAAIDDITIDQWTMSLDRNLTTALRMMRAVVPAMRAVGYGRVVNVSSLSGPVMAYSGDVAYHAAKAGMLGLTRGAAVDVAAAGITVNAVAPGWIVTSSSSEHEIAMGAATPIGRSGTPLEVAAAVAFLAGRSASYITGQLLVVDGANSIDEERGA
>NZ_CP047173.1|WP_159983913.1|895771_895876_-|PTS-transporter-subunit-EIIB
MLNSVGGPSNVTCLTRFATRLCFELVDRAKADLP
>NZ_CP047173.1|WP_159983912.1|894651_895641_+|substrate-binding-domain-containing-protein
MTTSAEVASHAGLSRSTVSQILNGRDHLFTPETIARVRTSAAALGYRPSLAGRTLARGTSDIVITLIPDVTFNPRLRELVDVVSAGLAQAGLTNLLQFVGAQTLLEDTILGLKPFGVVSLAPLSEEQRRRLLAQGVHLIVQSTSVQAAIDRAIGRLQAEHLIEAGYDILGVAVPVAARERKFALPREEGVTRFAASRGVTIIPTLHVALERGGSENALRSLPPERIGIAAYNDEVAMAVIGAGSRFGRSVPIDLGVIGVDNSSIAQSMTPTITTVDYDIVFSGHAIVEALLRGSEDAGSDAESVHQVEERLRVVQGESTSLSQRASDEN
>NZ_CP047173.1|WP_159983911.1|891687_894174_-|family-78-glycoside-hydrolase-catalytic-domain
MTESHISSPGGAQFIAAGHAAAEGDPVPYFRRVFHVGEGLRSARLRVTALGIVTSLVNGRRVGADVLAPGWTSYHHRIAVSEYEVTGDLGEGDNVLGALVAEGWAVGNMGYELKRHHYSDRPALYMELTLDYGDRTELIVTDDSFRVGEGAVRSASIYDGETYDARLEPSGWQTPQFDDATWSRATVHDSNLSALIEDGPPPIRRIEELRATSVINTPAGRTVVDFGQVLTGWVRLRVTGRPGQTVTFRHAELLNAQGEPEYETLRTAKATDSYTLRGEGEETWEPAFTFHGFRYVDIEGWPGDLDPADLVAVVVHSDMERTGWLETSDPLLNRLHENVVWSMRGNFVGVPTDCPQRDERLGWTGDIHTFAPTAAFLYDVRDVLGSWLQDVVAEQREKGFIPFFVPDVSGLPSAPTAQWGDVIVGLPVILYREYGDEGFLRRYWSAMTAYVDQVESLLDATGRWSSGHQFGDWLDPDAPSEDAAGGKTDRYLVATACFAKTVSQMAEAARVLDLHDQVARYTTLARRVRDAFRDEYVSRSGRLVSDSATAYSLAICYDLLDPQQREHAGARLAQLVTKAGYRISTGFVGTPLVAHALSDTGHVDVAYLLLTEQECPSFLYPLTQGATTIWERWDAIRPDGSLDSSGLTSLNHYALGSIAQWMYRVIGGLEALEPGYRRMRIAPQPGGGLTSAELVHDTIRGQIRVSWSKTAGELTVTVTVPEGASAEVVLPDHPVASTLEVQSGTHTWTYAVSEEQRETYTFDTSLQTLAADRTAWRALTQVFKKHLPFPIDASGAEAASITVAMLLTAIPHSTPELESDLRAALASL
>NZ_CP047173.1|WP_159983910.1|889378_890713_+|MFS-transporter
MRRKDAASNVPSNTPIEEVSQLTLRAEDAADGAGVEAPVSKVGPGFIFTYGLTYFGFFLCLFMPALFSLPYKIQLIDPASKETALGLIVGISAVVLLPIGPILGVLSDRSKFSWGRRRPFLLLGLAAFAVSAFVIATAPTVPIVLLGYVVAQLGVALVSVALNPALAELVPQAQRGKLGALSGVMASIAGVFATLVGSLLIGNLLLLFLLPVGVLAVGVALWIVVVPDRPAPERFQSVRLATALRSLLFNPLKHLDFTWVWIGKLCIGVGTAFFSTYQLYYLLDRLGFTVEQAGQQLAVAGGLALLATVGFTILGGFLSDKLHRRKPFIYIASAMIASGMVLAAFAPDFGVYIIGAVLLSAGSGAFNSVDLALASEVLPDPEAGGKWLSIYQISGTIATAVGPVIAPLLLAIGGGSGNYTALFIVGGLFALGAAVTASRVRGVR
>NZ_CP047173.1|WP_159983920.1|902959_903358_+|DUF779-domain-containing-protein
MDSTRVDVTEAAAGMLRRMSELHGPLMFHQSGGCCDGSSPMCFPVGMFRTGASDVLLETLHVDGLDPIEFHMSRSQFEYWKHTHLTVDLVDGRGSGFSVEAPEGKRFMIRSRLLTDAELVEFGLLPAAAVQL
>NZ_CP047173.1|WP_159986629.1|903449_903932_+|DUF4396-domain-containing-protein
MTDAAHDHSTHSSSTATSWRTAATATLHCLTGCAIGEVLGMVLGTALGLHNLGTVVLSIALAFLFGYALTMRGVLRAGVSWRAAVGIALAADTVSIAVMEVIDNTAMLAIPGAMDAGLATGLFWGSLVGSLALAFVVTTPVNRWLIGRGKGHAVVHRFHH
>NZ_CP047173.1|WP_159983921.1|903999_904815_-|hypothetical-protein
MNDKPVIDPERDRAFRRMIVENARADQALRPLRHRASFLVGLVTAAVLLSGGGVAVALTGAFDPPEPAPVETVTPEPVPTPSETQTATATAAAAPVPAPTPVPTETAATADLSDWVIGFDGIGPIVFGGSSESASAALDTTALVPYDFGIEECRSDRRASAENAQAWIMAVSDEPGRVTLLNVFGYGIDATRAAAAFPRTAEGIGIGSTEQELLAAYPGITPADPVAGDALYALSDGSGRSLWFRIAADQGTVVDITLNEQPVLTIGGCGA
>NZ_CP047173.1|WP_159983922.1|904811_905408_-|sigma-70-family-RNA-polymerase-sigma-factor
MTASSPPREAGVSWATALSGDPDDFGRLYDAFRQRVFWHALRHTRALHDAEDVTALVFLEAWRRRASVRLVDGSPLPWLLATTNNVARNAGRSARRHRLALGRLPEPVHQGDFAGDSDRRIDDEPRREAIRLAFGALGLRDQDVLSLCVVAEMPIADAAAVLGVPEGTVKSRLSRAKGKLAGLISDLTADAATDGGAR
>NZ_CP047173.1|WP_159983923.1|905499_907839_-|PASTA-domain-containing-protein
MIVSVLAGLLATAVVAPAFALTGAATSGTISAFQSLPSYLEVGELMQKTDVYAGDPDDPTLLASFYDQNRIEVSADQITGSVFDALIASEDPRYYEHGGIDLQGTLRAVASTYLLDAEPQGGSSITQQYVKNVLVQKAESITDETARDEAYAEATATTPERKLKEMRLAIGMEKEYSKDDILLGYLNIALFGGTVYGIEAAAEYYYGIHAADLTVGQSAALLAIVNNPEKFRFDRPDDPDNGEANGYALTTSRRDYILDRMLEYGKIDAATRDEAKAAPIEPRITPPSTGCQTAGSAAYFCDYVSHVLRDDPALGATDDERYAALKRGGLKVYTTIDLGLQETAQALMDEQIPASDPRFDVGATAVAVQTGTGKVLTMVQNKRYSQDPEVIASGPEYSAINLNVDAAMGGGNGFQPGSGYKVFTLAEWLRSGHTLLEQFDSKRKNWTGYTDSCEGTQNYADYNPKNAGDGAYSDTQTALNSTIWSLNTGYTGMSHLLDLCKIRTTAESFGIHRADGGALSQSAASVIGTNEIAPMTMAVAYAAIADDGMRCTPVVITEITGPDGNAIPPSESECTRAVSSSVARAMQYAMLKVTAEGTGTQADPKDGVQHITKTGTSDNSADTWALGASSSVSLAVWVGSIKAQATGSRVNLESIDFPSGWAPDARHRIWKPLMTEIDSLYRGSDFAAADPALIAAPQVVVPDLSGRSSDSAIRTLTDAGFTVGSTTQVDSTQPQGAVAGTVPAAGTTVDKGSVVGVTLSTGTPPAATPPPPAASPPTG
>NZ_CP047173.1|WP_159983924.1|908046_910491_-|PASTA-domain-containing-protein
MALPTASRSSARPLGMSLRAVLGFIGMSAVAGVLITVGVTPALALTGLATSNTIGMFQNLPGYLDAGQLMQRTNIYAGDGTTLLASVYNQNRVEVGWDEVAQTAKDAAVAGEDPRFYEHGGIDLQGTLRALAVTLTGDDLQGGSSITQQYVKNVLVQKAESITDEAARDEAYKLATDPTPERKLKEMRLAIGLEKESSKDDILLGYLNIALFGGTVYGIEAAANYYYGIPASQLSTAQAAALLAIVNNPSKFRFDNPADEANGAANGYAATKERRDYILGEELKYSKISQEVYDAAIAEPITPNITEPSTGCATAGDAAYFCEYVLNVLRNDEAFGATDDERYQRIRQGGFDIVTTLDLDIQQVSQAALNAYIPSYDPRFQVGATAASIQAGTGRVLSMVQNTKYSQDEEFLAANPGYSAINLNVDSAMGGTAGVQTGSTYKVFTLAQWLESGRTINESFPSPTSGFSSYPQKCNIDNKGYYYGKFSPKNDDSSENASSMTALAATTNSINTGFMGMAQQLDVCDVRTTAESFGVHRADGGELASGPASVLGTNEIAPLTMATAYAGIANDGTTCSTVVIDKITDASGAAVAAPASSCTPSVSADVAHGMQYAMQRVMTSGTGYASNPRDGIEHIGKTGTTDDAADVWTAGASKAASLAVWVGSIKGFDDNTKINLRNVRVTGEAGTIQAAQSRHAIWKPIMTALDQKYGGDDFTDPPASMLASSPRNATLAEVPDVTGLTVAAATATLTAAGFSVGILEPVGSASIPEGSVVSTTPSAELTALRGAVIPLQVSNGAAPKNTSDISDIDGDLIE
>NZ_CP047173.1|WP_159983925.1|910828_911764_+|cysteine-synthase-A
MARIHDDVTQLVGRTPLVRINRLDGADSAVVLAKLEFYNPANSVKDRIGVAIIDAAEASGELPPGGTIVEGTSGNTGIALAMVGAARGYKVVLTMPETMSVERRVLLRAYGAEIVLTPGSEGMRGAVERAQSIVAETPGAVLARQFENAANPEVHRRTTAEEVWEDTDGEVDVFVAGIGTGGTITGVGQVLKERKPGVQIIGVEPIDSPLLTQGTAGPHKIQGIGANFVPAILDREVYDEIIDVTLDDSVRVAREMAAREGILGGISSGSIMWAALEVAKRPENAGKTIVAIVCDFGERYISTVLYEDLRS
>NZ_CP047173.1|WP_159986630.1|911760_912363_+|serine-O-acetyltransferase
MSPAGPRPTALGRLRADVAAARLRDPAARTTAEVVLAYPGLHAVWLHRVAHRWWRRGARLPARLLAQAARAATGVEIHPGATIGRRLFIDHGMGVVIGETARIGDDCMLYHSVTLGGKSAKRERRHPTLGDRVVVGAGAVILGPIVLGSDVSVGANAVVVKDAPDGAVLVGIPARDLRALGRADDALADPAFWIDPAMYI
>NZ_CP047173.1|WP_159983926.1|912423_913893_-|deoxyribodipyrimidine-photo-lyase
MSSSSPTLVWLRDDLRLADNPALRAAIDRGGPVAVCYVLDEESDGIRPLGGAARWWLHGSLQSLASDLEEVGAALLLRRGPAEAVVLQLAEQLGAGAVHWNRRYGKAERTVDAAIKTALRDRDVEAESHHGSLLFEPWTVQTGGGGPYSVYTPFARACRNRETPRAPMPRPREIDGGVPSVASDDLDDWQLLPTSPDWAGGLRERWIPGEKAAAKRLRAFLAEQLDDYADDRDLPAHDATSNLSPHLRWGEISPFQVWHALEEAHAKGQHRGEGSDRFLSEVLWREFCYHLLFHWPDLATANFDSRFDSFPWGHPGEEKIDAWHQGRTGFPLVDAGMRELWKTGYMHNRVRMVTASFLIKNLLVDWRVGEDWFWDTLVDADPASNAANWQWVAGSGADASPFFRVFNPVTQSKKFDPEGGYLREYVPELAELDRTVIHEPWTLGDTLTPEADGYPAPILDLKETRVHALEAFAVIKSAKRDISRRDSDD
>NZ_CP047173.1|WP_159986631.1|913978_914359_-|MarR-family-transcriptional-regulator
MRALSTDFPSKEISLNEYDVLFNLTLQPGRRARLRDLNKHVLLTQPSVSRLIDRLVARGCVTKSEDPTDARGTVIEITEGGYALFRRVAMTHMQTISDHVGSALDDDELDQLAALCDKLRDRVASA

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Crispr_ID: NZ_CP047173_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP047173_5

1301165-1301311

Unclear

Consensus_repeat	Method
GGCTCGCTGGATCCGGCGATTTCCGCGTGCCGGAGGTGGTTCCGCGTGCCGGAGT	CRISPRCasFinder

1 spacers

cas3

The CRISPR arrays of NZ_CP047173_5

>merge|NZ_CP047173|5|1301165-1301311|CRISPRCasFinder
GGCTCGCTGGATCCGGCGATTTCCGCGTGCCGGAGGTGGTTCCGCGTGCCGGAGTCCGGTCGGCGGCATCTTCGGCTCGCGGAATCGGCTCGGGCTCGCTGGATCCGGCGATTTCCGCGTGCCGGAGGTGGTTTCGCGTGCCGGAGT

>NZ_CP047173|5|5|1301165-1301311|CRISPRCasFinder
GGCTCGCTGGATCCGGCGATTTCCGCGTGCCGGAGGTGGTTCCGCGTGCCGGAGT	CCGGTCGGCGGCATCTTCGGCTCGCGGAATCGGCTCG
GGCTCGCTGGATCCGGCGATTTCCGCGTGCCGGAGGTGGTTTCGCGTGCCGGAGT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP047173.1\|WP_159984198.1\|1311708_1312776_-\|phosphotransferase	unknown	unknown	gnl\|CDD\|270701
NZ_CP047173.1\|WP_159984191.1\|1296658_1297681_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|377028
NZ_CP047173.1\|WP_159984201.1\|1315513_1316317_-\|TOMM-precursor-leader-peptide-binding-protein	unknown	unknown	gnl\|CDD\|274832
NZ_CP047173.1\|WP_159984192.1\|1297744_1298587_+\|PHP-domain-containing-protein	unknown	unknown	gnl\|CDD\|223686
NZ_CP047173.1\|WP_159984188.1\|1293427_1294210_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP047173.1\|WP_159984195.1\|1301531_1302203_-\|GntR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224715
NZ_CP047173.1\|WP_159984196.1\|1304541_1304859_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP047173.1\|WP_159984190.1\|1295065_1296592_-\|M24-family-metallopeptidase	unknown	unknown	gnl\|CDD\|238520
NZ_CP047173.1\|WP_159986676.1\|1303778_1304465_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226611
NZ_CP047173.1\|WP_159984189.1\|1294290_1295043_+\|C26-family-cysteine-hydrolase-domain-containing-family	unknown	unknown	gnl\|CDD\|224982
NZ_CP047173.1\|WP_159984199.1\|1312936_1313884_+\|NAD(+)-diphosphatase	unknown	unknown	gnl\|CDD\|234699
NZ_CP047173.1\|WP_159984197.1\|1308538_1311772_+\|UvrD-helicase-domain-containing-protein	unknown	unknown	gnl\|CDD\|223288
NZ_CP047173.1\|WP_159984185.1\|1291184_1291622_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|377727
NZ_CP047173.1\|WP_159984200.1\|1313880_1315593_+\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|223288
NZ_CP047173.1\|WP_159984194.1\|1300386_1301106_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|205967
NZ_CP047173.1\|WP_159984186.1\|1291618_1292410_-\|crotonase/enoyl-CoA-hydratase-family-protein	unknown	unknown	gnl\|CDD\|180625
NZ_CP047173.1\|WP_159984193.1\|1298787_1300233_-\|DEAD/DEAH-box-helicase	cas3	cd09639_cas3_CAS-I	gnl\|CDD\|223587
NZ_CP047173.1\|WP_159986675.1\|1302498_1303782_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|340929
NZ_CP047173.1\|WP_159984187.1\|1292534_1293368_-\|arginase-family-protein	unknown	unknown	gnl\|CDD\|212523
NZ_CP047173.1\|WP_123447586.1\|1304880_1305105_-\|DUF3107-domain-containing-protein	unknown	unknown	gnl\|CDD\|378634

Protein	Function_ID	Function_description	E-value
NZ_CP047173.1\|WP_159984198.1\|1311708_1312776_-\|phosphotransferase	gnl\|CDD\|270701	cd05152, MPH2', Macrolide 2'-Phosphotransferase. MPH2' catalyzes the transfer of the gamma-phosphoryl group from ATP to the 2'-hydroxyl of macrolide antibiotics such as erythromycin, clarithromycin, and azithromycin, among others. Macrolides penetrate the bacterial cell and bind to ribosomes, where it interrupts protein elongation, leading ultimately to the demise of the bacterium. Phosphorylation of macrolides leads to their inactivation. Based on substrate specificity and amino acid sequence, MPH2' is divided into types I and II, encoded by mphA and mphB genes, respectively. MPH2'I inactivates 14-membered ring macrolides while MPH2'II inactivates both 14- and 16-membered ring macrolides. Enzymatic inactivation of macrolides has been reported as a mechanism for bacterial resistance in clinical samples. MPH2' is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K).	3.06159e-38
NZ_CP047173.1\|WP_159984191.1\|1296658_1297681_-\|hypothetical-protein	gnl\|CDD\|377028	pfam03372, Exo_endo_phos, Endonuclease/Exonuclease/phosphatase family. This large family of proteins includes magnesium dependent endonucleases and a large number of phosphatases involved in intracellular signalling. This family includes: AP endonuclease proteins EC:4.2.99.18, DNase I proteins EC:3.1.21.1, Synaptojanin an inositol-1,4,5-trisphosphate phosphatase EC:3.1.3.56, Sphingomyelinase EC:3.1.4.12, and Nocturnin.	8.43389e-19
NZ_CP047173.1\|WP_159984201.1\|1315513_1316317_-\|TOMM-precursor-leader-peptide-binding-protein	gnl\|CDD\|274832	TIGR03882, hypothetical_protein, bacteriocin biosynthesis cyclodehydratase domain. This model describes a ThiF-like domain of a fusion protein found in clusters associated with the production of TOMMs (thiazole/oxazole-modified microcins), small bacteriocins with characteristic heterocycle modifications. This domain is presumed to act as a cyclodehydratase, as do members of the SagC family modeled by TIGR03603.	3.02613e-07
NZ_CP047173.1\|WP_159984192.1\|1297744_1298587_+\|PHP-domain-containing-protein	gnl\|CDD\|223686	COG0613, COG0613, Predicted metal-dependent phosphoesterases (PHP family) [General function prediction only].	2.2418e-34
NZ_CP047173.1\|WP_123447586.1\|1304880_1305105_-\|DUF3107-domain-containing-protein	gnl\|CDD\|378634	pfam11305, DUF3107, Protein of unknown function (DUF3107). Some members in this family of proteins are annotated as ATP-binding proteins however this cannot be confirmed. Currently no function is known.	1.91855e-28
NZ_CP047173.1\|WP_159984195.1\|1301531_1302203_-\|GntR-family-transcriptional-regulator	gnl\|CDD\|224715	COG1802, GntR, Transcriptional regulators [Transcription].	1.3091e-36
NZ_CP047173.1\|WP_159984190.1\|1295065_1296592_-\|M24-family-metallopeptidase	gnl\|CDD\|238520	cd01087, Prolidase, Prolidase. E.C. 3.4.13.9. Also known as Xaa-Pro dipeptidase, X-Pro dipeptidase, proline dipeptidase., imidodipeptidase, peptidase D, gamma-peptidase. Catalyses hydrolysis of Xaa-Pro dipeptides; also acts on aminoacyl-hydroxyproline analogs. No action on Pro-Pro.	1.89261e-102
NZ_CP047173.1\|WP_159986676.1\|1303778_1304465_+\|hypothetical-protein	gnl\|CDD\|226611	COG4126, COG4126, Hydantoin racemase [Amino acid transport and metabolism].	1.65262e-28
NZ_CP047173.1\|WP_159984189.1\|1294290_1295043_+\|C26-family-cysteine-hydrolase-domain-containing-family	gnl\|CDD\|224982	COG2071, COG2071, Predicted glutamine amidotransferases [General function prediction only].	9.57233e-51
NZ_CP047173.1\|WP_159984199.1\|1312936_1313884_+\|NAD(+)-diphosphatase	gnl\|CDD\|234699	PRK00241, nudC, NAD(+) diphosphatase.	4.97574e-69
NZ_CP047173.1\|WP_159984185.1\|1291184_1291622_-\|hypothetical-protein	gnl\|CDD\|377727	pfam06877, RraB, Regulator of ribonuclease activity B. This family of proteins regulate mRNA abundance by binding to RNaseE and inhibiting its endonucleolytic activity. A subset of these proteins are predicted to function as immunity proteins.	1.65837e-11
NZ_CP047173.1\|WP_159984200.1\|1313880_1315593_+\|AAA-family-ATPase	gnl\|CDD\|223288	COG0210, UvrD, Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair].	3.18028e-92
NZ_CP047173.1\|WP_159984194.1\|1300386_1301106_+\|hypothetical-protein	gnl\|CDD\|205967	pfam13794, MiaE_2, tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE)-like.	1.22519e-18
NZ_CP047173.1\|WP_159984186.1\|1291618_1292410_-\|crotonase/enoyl-CoA-hydratase-family-protein	gnl\|CDD\|180625	PRK06563, PRK06563, crotonase/enoyl-CoA hydratase family protein.	2.85769e-120
NZ_CP047173.1\|WP_159984193.1\|1298787_1300233_-\|DEAD/DEAH-box-helicase	gnl\|CDD\|223587	COG0513, SrmB, Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis].	6.39128e-148
NZ_CP047173.1\|WP_159986675.1\|1302498_1303782_+\|MFS-transporter	gnl\|CDD\|340929	cd17371, MFS_MucK, Cis,cis-muconate transport protein and similar proteins of the Major Facilitator Superfamily. This subfamily is composed of Acinetobacter sp. Cis,cis-muconate transport protein (MucK), Escherichia coli putative sialic acid transporter 1, and similar proteins. MucK functions in the uptake of muconate and allows Acinetobacter calcoaceticus ADP1 (BD413) to grow on exogenous cis,cis-muconate as the sole carbon source. The MucK subfamily belongs to the Metazoan Synaptic Vesicle Glycoprotein 2 (SV2) and related small molecule transporter family (SV2-like) of the Major Facilitator Superfamily (MFS) of membrane transport proteins. MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	4.47862e-47
NZ_CP047173.1\|WP_159984187.1\|1292534_1293368_-\|arginase-family-protein	gnl\|CDD\|212523	cd09999, Arginase-like_1, Arginase-like amidino hydrolase family. This family includes arginase, also known as arginase-like amidino hydrolase family, as well as arginase-like proteins and are found in bacteria, archaea and eykaryotes, but does not include metazoan arginases. Arginase is a binuclear Mn-dependent metalloenzyme and catalyzes hydrolysis of L-arginine to L-ornithine and urea (Arg, EC 3.5.3.1), the reaction being the fifth and final step in the urea cycle, providing the path for the disposal of nitrogenous compounds. Arginase controls cellular levels of arginine and ornithine which are involved in protein biosynthesis, and in production of creatine, polyamines, proline and nitric acid.	7.25386e-60
NZ_CP047173.1\|WP_159984197.1\|1308538_1311772_+\|UvrD-helicase-domain-containing-protein	gnl\|CDD\|223288	COG0210, UvrD, Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair].	1.21147e-83

>NZ_CP047173.1|WP_159984194.1|1300386_1301106_+|hypothetical-protein
MAAWFRRRRPLGEAPRLTPRGESSSKRDRVDLADLTPELLPYLGQVAYLQLAVFEALARGVAGTDDLADKEAISAAAGTALAKHHAVVAELRRRDVEPSEAMAPFRPAIDTFEHLTRGADLHETLLSAYITAGLLDDFFIRLTGGLPNDVGPRIAQTLGADTGIDGLIAILRREIAADERLGSRLAVWGRRLVGDTLLVARSALLGSGNHDSDESRIEPVFTELIASHTRRMDALGLTA
>NZ_CP047173.1|WP_159984193.1|1298787_1300233_-|DEAD/DEAH-box-helicase
MTFSDLNIDDDIVAALAAQGILEPFPIQEQTIPLALQKQDIIGQAKTGTGKTFGFGLPLIQALGNDPEPGVKALIVVPTRELAVQVTEDIELAASNRPTKIVSIYGGKAYEGQIEQLKAGAQIVVGTPGRLLDLAGQRLLSLASVQTMVLDEADKMLDLGFLSDIEKLFAQTPATRHTMLFSATMPGAIVALARRFMNKPIHIRATDPDEGITQANIKHIVYRAHSLDKDEVIARILQAEGRGKTVIFTRTKRAAARIVEELNDRGFNAAAVHGDLNQEQRERAMAAFKAGKKDILIATDVAARGIDVNDVTHVINHTIPDDDQTYLHRVGRTGRAGKTGIAVTFVDWEDLHKWALINRALEFGQPDPVETYSSSPHLYEDLDIPAGTKGRLKPTPIPAEAKADARPERSTRQREPREGGREPRRRNRGGDSAEVSNAAEGESVPAGQAPSSESKEHHDGNSEPRRRTRQRRRGPRPDGSA
>NZ_CP047173.1|WP_159984192.1|1297744_1298587_+|PHP-domain-containing-protein
MHVPGGRYDLHTHSLVSDGTEPPEVLVRAAAAAGLDGVALTDHDTTRGWAAAIAAAEEAGIDLLPGMELSSRVGWASVHVLAYLVDPEDPGLVAETTRIRSERSQRAQAIVAAIAADYDLTWEDVLAQTSPGTTIGRPHIADALVARGLATDRSAAFAGILDWRGGYYRPHYAPDPVEAVRLVRAAGGVPVIAHPATSTRGIVIESMLPDLVDAGLFGVEVEHRENTGEGKRRLRELAERYSLVTTGSSDYHGTGKPNRLGENTTARATVDAIRGAARAR
>NZ_CP047173.1|WP_159984191.1|1296658_1297681_-|hypothetical-protein
MGTRLVKFAVALAVALLLLVVAAPGFFGIAGQTPFAQLVSFRAATAVAAVAGAVVLVVVAVLVEPVRRLALVIAALGVAFALVLGGLQAVRGDDAAPPRAHRLGDLRVLSWNLLHDGVPAETIATLAAENAVDALALLEVSPERAQEVSDALSAAGRPMILHQVPGADANDGTALLLAPTLGGYSVDAASTPTATNASLVARPDGPGRPVLAAVHTTAPLPALTTEWRSDLARLADLCTAEDDLVVLGDLNSTLDHWSALPGDADLGGCTDAGALANAAASGTWPTSLPSGLAAPIDHVLFSGRWDVSGFEVLTGQDDAGSDHRPVLAQLSVRGMVKESS
>NZ_CP047173.1|WP_159984190.1|1295065_1296592_-|M24-family-metallopeptidase
MTNTDQQTSTDSTTTDHASTPSTAAAPAPRATTNRSTTPGSDRFRDFIASGWADRDEPLPAPREQAAFAARRRERLSALHTGVRLVVPAGRLKQRANDTDYPFRAHSAFTWLTGWGSDSEPGAVLVLEPSGDGHTATLYFRERAGRDSDEFYANSEIGEFWIGPRPSLAQVASDLGLDARGIDELDAALDAGDAPVAVLREADPLVTERLGKRSADGAADRDTALERDLSELRLIKDAYEIAELRAAVDATARGFEDVLADLPRIVRHERGERLIEGVFNGRARADGNAVGYDTIAAAGPHACILHWTRNDGPVRPGDLVLLDAGVEQESYYTADITRTFPVDGHYTEAQRRVHETVREAADAAFAIVRPGIRFREVHAAAMAVIARRTAEWGLLPVSAEEALEADNQQHRRYMVHGTSHHLGLDVHDCAKARREMYLDGIVEAGMVFTIEPGLYFQPDDLTVPAELRGIGVRIEDDVLVTEDGAENLSAGIPRSADDIEAWLARLAR
>NZ_CP047173.1|WP_159984189.1|1294290_1295043_+|C26-family-cysteine-hydrolase-domain-containing-family
MPGTLAIVEVASARPGRDEYHAYVQLLNGRLLSLARELGWQAERFAAEDLGTARLLEQTLSADAIVLAGGEDIAPERYGVPRGYPGEGPHAERADAAQIALVRRALARRTPLLGICRGLQIVNVALGGTLVPDLGPDAAHVNAAAPAHERMHRHDVLLAADSVLGGLFGAAALAVQSAHHQAVDALAPGLRVVARADDGVVEALEHLEAPIVGVQWHPEDPAAPAGQLAALLEGLALAVSRESAGAAVAA
>NZ_CP047173.1|WP_159984188.1|1293427_1294210_-|hypothetical-protein
MTSQPPTLPERLQRSRSAVSVLAGTTSERQVRPLREAIAAAAGRDAAGAAALLDTADALAELIDRAETQLSALERTVRDDLERAGTLADVRTTAQLASAADVATACAAASALLLSADDARSSETRHDPSAVLALLLEADAALDAVVAGYRDPRAQAQRQLLLVEGARTVALLGVEAVALLVAVHGERITAAPRILAEETRAQLAGALRIAATDPSAALAQARAADDRARSALDEALLDLDGPAAPSAEPLVAAPGELPAA
>NZ_CP047173.1|WP_159984187.1|1292534_1293368_-|arginase-family-protein
MASFLVVPQWQGSASTRAMRLVDGADAIRGDLPSSATIVVEVPAEAGDAQDTGVRRYASVAMTAERVREALAGRSGPVVTIGGDCGVEFAAIGHAVRTSAEPVALVWLDAHPDASTPETSPSGAFCGMVLSAVLGRGVGLLSATAADRVADERVVLAGVRAADPGELEGLLERGAARLDVDALDPEALVAAVEATGAGSVYVHIDLDVLDPAELAGLFDPVPFGVPASRLVECLAALRARFPLAGAGLTSFAPSSPAAAVDDLPTILRLVGALARGV
>NZ_CP047173.1|WP_159984186.1|1291618_1292410_-|crotonase/enoyl-CoA-hydratase-family-protein
MSDERRRVRTERRGHVLEIVLDRPEKRNAADFALLTELAAAYGVLDRDPELRAGVVLAEGAHFTAGLDLADIGPRLGGDGLDFVPEGGLDPWAIRTRPVSKPVVIGLQGTCLTLGIELALASDVVLAEESARFGQIEVARGILPFGGATLRFPRAAGWGDALRWILTGDEFDAREAHRIGLVQEVVPDGAVAEAARALAARIAAQAPLAVQAALANARLAVAASDAEAAAALPAELARLAASDDARIGMEAFLARSTAEFTGR
>NZ_CP047173.1|WP_159984185.1|1291184_1291622_-|hypothetical-protein
MSEQSTAPDTSAVGTPAPGTPVSSAPVSSTPASSRPSALEAQRERAAQQLEVRLRYGDQVCELREVDHFAVFSSRSRARRAGRALVASGFEIAISRLRLRLVLVASHHAAVDEEATTAFLRQVIDAVEREGGRYDGWRAEIVPAH
>NZ_CP047173.1|WP_159984195.1|1301531_1302203_-|GntR-family-transcriptional-regulator
MPTKSPAQTMSQRVYEELRARILDGRLPAGEPIRERDLATELAVSRVPIREALPWLELAGLVTVRPRSTAVVSIVRRRDVDELYDIRSALEPLVARKAAEAVARGADASALTAVVADASAALAAGDLARFHSESGRIHGAIEAIAGNRLLITTMQPLDERSNRLNIANIQAEPHVRHDEHVRLAEAIAAGDAPLAVSVAHAHVEWGRTRTIATLAHVPGFIDD
>NZ_CP047173.1|WP_159986675.1|1302498_1303782_+|MFS-transporter
MILFGVFFDAIEQNTVGVAGPILAADWGLAGAQIGLLNTATFTAVALGRVLAGVVMDRIGRRTLLGANLMIFAVGSLLCAFAPSYEILVAARFLVGLGLGGEIATAVIMLAEFFSAKHRGTAVGLINVAAAGLGNMLAPLFGVIVFSVFTGDDRWRWLFGILVIPALAVVVYRRALPETPRYLAARGRVAEANTVINRLAQGRLHRPVENEVDYLGGAADQPVTAAVTPRWTELFGRRHRRTTIALGIAVCMSYAAQISMLTLIPLILTSRGFDITSALWYTLVMQSGSLVGALVAALAARRLPRKLTLTVAALLGIGAGLGFGFLGTTVALVLVFGFLFNFSVIVLNTTIWLFAPEQYPTRIRGLGTSVILALGSLSGGLFPLLAGAVLDASGVGGMFALLAGLFAICAIAVQFPRETVGRPMAED
>NZ_CP047173.1|WP_159986676.1|1303778_1304465_+|hypothetical-protein
MSVRRTIVVVNPNTSVTTTRLLVAVARDAVRGEDVRIVGETAAEGPSIITTPAALAAAAGQVVAAAGRAVLLHAPDAIVVAAFGDPGAAGAAESTGLPVVGIGAAAVRAASAQGRRFAIATTTGRLEPVLRALVADTVGLGAYAGCFLTASPAEELDDPERLHRELRVAVLRARSAGAEAVIIGGGPLSAAAERLTAEFAGTLPVVEPIRAAVAEALAATERVEALPA
>NZ_CP047173.1|WP_159984196.1|1304541_1304859_-|hypothetical-protein
MELLFVTLGGVLLGLAARYGLPHRHLHGSMLIPALGGVVAAVVWVALTWAGLPWDGGLIWILALGLAAVAVLVADVALGRSRTRRDDTALEAMLAGRIAPDRVAP
>NZ_CP047173.1|WP_123447586.1|1304880_1305105_-|DUF3107-domain-containing-protein
MEIRIGIVNTPRELNFESSLSVAEVEKTVTTALEAGAKVLRLRDEKGKIYIVPTETIAFVEVGSEESRRVGFVA
>NZ_CP047173.1|WP_159984197.1|1308538_1311772_+|UvrD-helicase-domain-containing-protein
MIDALAIAAALDLRPPTAEQRAVIEAPLAPALVVAGAGSGKTETMANRVLWLLANGLAAPSEVLGLTFTRKAAAELGERIGRRIDQLGAAGLLPLREGQSEPDPFEAATVSTYNAFANTIFRDNAALIGREGDATVLSEASAWHLARGVVADTADPRILEVEASIDRLTDLVVSLAHDLADNLADPAEVAGFAEEFLRLGELPRGSSGSGMYRDLEKALQAVGALPVLTALAERFQEAKAERGFVEFSDQVALALRITERVPRIVDEHRARYRVVLLDEYQDTSVLQTRLLARLFAEQGVMAVGDPHQSIYGWRGASAEGLGRFALDFGSAARFSLSTSWRNGHGVLAAANAVVAPLTAGSAVPVDRLAAGPGASDHAVELTFPETIDDEADDVARWFAGHLGESAELGEQPPSAAALFRVRAHMDRFAAALSRHGVRYHILGIGGLLRQPEIADLVAALTVVEDPAAGSELVRLLSGARWRLGVRDLRALRDLASWLASRDHAHRLLPEEVRERMRASVTEGEGGSIIEALDFVASRRPGEDGRIDHSALSPFSDEGLRRLHEAGTLFARLRARAGLDLLDFVTLVEQELGLDIEVEANESRSDGRANLEAFREAVAGYLQTDDRGAGTGSSLRGFLRWLVLADKRDGLAPRPEDPEPGTVQLLTIHGSKGLEWDLVAVPRMVDGELPGTPVEGFRGWVRLGAMPYAFRGDAAELPDLAWRGCATQKEVVDAIADFGDTLRERNESEERRLAYVAVTRARHHLLLSGSWWAGQAKPRGPGVFLRDLAEAGTLPELPVEPSNPENPLEQAPRTFRWPHDPLGARGDRVRAAAERVLVAEPALLGARGADIRLLLAERAVRLSGGERVGLPTRIPASRFKDIVSTPAEVTAQLRRPMPERPYRQTRLGTTFHSWVENRFGIQGEAEAVDTFPDEFDDAGSDSAAGAEQEQLARLIETFERSEWAGRRPEAVEIEIHLQLAGHVVVCKLDAVYPTEEGHQIVDWKTGRAPKDAADLELKQFQLALYRLAYSRWKGVPLESVDAVFYFVADDLVLRPERFYSERELSEALSSATGASPRP
>NZ_CP047173.1|WP_159984198.1|1311708_1312776_-|phosphotransferase
MARSPLTLAALATSAVEGLDVRTTREFTHSTHGDFDSALLTTRDGARLVVRVPTSPLAEQEQLGDLVALRALTAGIRSRLPFDLQESIGQTPFDGTRGVVYPYLEGERVLIDDVAASSGLADSVGRAIGAIHSLPASFVQEAGLPVASARDSVNESVAVIERAADTGHVPAALVARWESASSDEALWQFDPTVVNGSMTSDSFLRSGDSVGAVLGWAALRVGDPARDLHWLLSAPGAGTAFAAYSRMRAGAVDRTIRQRAQLYAELELARWLLHGTESDDSAIVDDAVGMLDLLVDSVLGDLSAPLSTDTGPVLEISEVEELLNRTPGARTGSSAHGRGLAPVAEESASDSSRSE
>NZ_CP047173.1|WP_159984199.1|1312936_1313884_+|NAD(+)-diphosphatase
MTTSFSDRLPLARQAVDRDYLARARPELFDELVADEATRVLLLHGDKALVSGERLALRRSADVPAGALRLYLGRTTADAEGEPAGTPVVAAVLTDEQASALEPDDSAWGALRTLAEHLSDRDAGLFTEALAMVNWHASHGFSPRNGEATVIEQGGWVRRSPADGSQVFPRTDPAIIVCVLDADDRLLLGSNAMWGTGRFSLLAGFVEPGESLEAAVVREIFEESGMRVVDPQYLGSQPWPFPASLMVGFTARLAADQAPADLVPDGEEIVALRWFTRQQLHDSLESVLLPGRSSIARAMIEDWYGGALENGPIVA
>NZ_CP047173.1|WP_159984200.1|1313880_1315593_+|AAA-family-ATPase
MTLLDGLDEGQREAAEALLGPVCIMAGAGTGKTRTITHRIAHGVATGVYTPARVMALTFTSRSAAELRSRLRVLGAGGVMARTFHAAALSQLGFFWPQLVGGTMPQLLDGKARLLGHAAERLRLKLDTATLRDLSAEIEWRKVSALSLEQYAVAARTRALPGRLTLEQTVALVDEYEGLKDQRRQIDFEDVLLVTAGMLESEPAMAMQVREQYRFFVVDEYQDVNPLQQRLLELWLGDRSDLCVVGDASQTIYSFAGARADYLLDFGSRWPAATVVRLEENYRSAPPIVQTANRLMRGRPGALVLHSVAGAPEAAPTPEPAIDAYPDDVAEARGVAARVAADIEAGVRPSAIAILFRTNSQSAILERALHERGVAAHLRGGKRFFDLPEVKQAVMQLRAASVSISGEPLFKSVSDVLRSLGWSAEPPSAPGAVRERWESLDTLARLVDEAPAGWSFKQFTDDLLARQQVHHEPDRAAVTLATFHSAKGLEWESVHLMGLTEGLLPISYASGLEAIDEERRLLYVGITRARRLLRLSWSQSTVGRVTRREPSRFLAEIGTRTRGAAPAGAR
>NZ_CP047173.1|WP_159984201.1|1315513_1316317_-|TOMM-precursor-leader-peptide-binding-protein
MVLQLDPRLPLLWRSATTVQFGLDHPRALLDGVGYAEELLLDALRAGTSAGTARLIATRAGASDSRVDEVLAALRPVLVRSIDPGPPAAPRVVVEGTGSAADALRSLLRGEGCELVGDEGLPGLAVLIADFAVAPARAAHWLSSDVPHLAVVFGDEAVRIGPLVEPGTGPCLHCADRDRIDLDPDWPRLVIQVLGATASTRTPLASATVAVAAADAALRRLHAGWTGLRDGVRTYSDASGAFSELRLEPHPECACRSLRGTATAPVA

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Crispr_ID: NZ_CP047173_6

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP047173_6

1547884-1547977

Orphan

Consensus_repeat	Method
GCCGTTGCGCGGATACTCGACCAGCA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP047173_6

>merge|NZ_CP047173|6|1547884-1547977|CRISPRCasFinder
GCCGTTGCGCGGATACTCGACCAGCATGGAGGGGCCGCTGGGCGGTCGGCGTGCTCGGGTCTCGATACGCCGCTGCGCGGATACTCGACCAGCA

>NZ_CP047173|6|6|1547884-1547977|CRISPRCasFinder
GCCGTTGCGCGGATACTCGACCAGCA	TGGAGGGGCCGCTGGGCGGTCGGCGTGCTCGGGTCTCGATAC
GCCGCTGCGCGGATACTCGACCAGCA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP047173.1\|WP_159986705.1\|1551577_1552651_+\|prephenate-dehydrogenase	unknown	unknown	gnl\|CDD\|235824
NZ_CP047173.1\|WP_159986706.1\|1552689_1553487_+\|(d)CMP-kinase	unknown	unknown	gnl\|CDD\|236546
NZ_CP047173.1\|WP_159984376.1\|1553461_1554982_+\|ribosome-biogenesis-GTPase-Der	unknown	unknown	gnl\|CDD\|179525
NZ_CP047173.1\|WP_159984370.1\|1542844_1544533_+\|DNA-repair-protein-RecN	unknown	unknown	gnl\|CDD\|223571
NZ_CP047173.1\|WP_159984371.1\|1546322_1546961_+\|NUDIX-domain-containing-protein	unknown	unknown	gnl\|CDD\|239516
NZ_CP047173.1\|WP_159986703.1\|1544566_1546330_+\|CTP-synthase	unknown	unknown	gnl\|CDD\|235437
NZ_CP047173.1\|WP_159984374.1\|1549779_1550376_+\|SMC-Scp-complex-subunit-ScpB	unknown	unknown	gnl\|CDD\|377219
NZ_CP047173.1\|WP_159984375.1\|1550362_1551535_+\|pseudouridine-synthase	unknown	unknown	gnl\|CDD\|224108
NZ_CP047173.1\|WP_159984378.1\|1556485_1556746_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|381685
NZ_CP047173.1\|WP_167306099.1\|1540903_1541059_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP047173.1\|WP_159984366.1\|1532536_1533232_-\|DNA-binding-protein	unknown	unknown	unknown
NZ_CP047173.1\|WP_159984369.1\|1541915_1542839_+\|NAD-kinase	unknown	unknown	gnl\|CDD\|235121
NZ_CP047173.1\|WP_159984367.1\|1533334_1534645_+\|tyrosine--tRNA-ligase	unknown	unknown	gnl\|CDD\|235645
NZ_CP047173.1\|WP_159984368.1\|1541055_1541868_+\|TlyA-family-rRNA-(cytidine-2'-O)-methyltransferase	unknown	unknown	gnl\|CDD\|224110
NZ_CP047173.1\|WP_159984373.1\|1548947_1549790_+\|segregation/condensation-protein-A	unknown	unknown	gnl\|CDD\|224273
NZ_CP047173.1\|WP_159986702.1\|1531907_1532510_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP047173.1\|WP_159984379.1\|1556755_1558213_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP047173.1\|WP_159984372.1\|1548076_1548964_+\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|224113
NZ_CP047173.1\|WP_159986704.1\|1546957_1547866_+\|site-specific-tyrosine-recombinase-XerD	unknown	unknown	gnl\|CDD\|234713
NZ_CP047173.1\|WP_159984377.1\|1555576_1556143_-\|TetR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|366102

Protein	Function_ID	Function_description	E-value
NZ_CP047173.1\|WP_159986705.1\|1551577_1552651_+\|prephenate-dehydrogenase	gnl\|CDD\|235824	PRK06545, PRK06545, prephenate dehydrogenase; Validated.	1.50425e-121
NZ_CP047173.1\|WP_159986706.1\|1552689_1553487_+\|(d)CMP-kinase	gnl\|CDD\|236546	PRK09518, PRK09518, bifunctional cytidylate kinase/GTPase Der; Reviewed.	2.50652e-57
NZ_CP047173.1\|WP_159984376.1\|1553461_1554982_+\|ribosome-biogenesis-GTPase-Der	gnl\|CDD\|179525	PRK03003, PRK03003, GTP-binding protein Der; Reviewed.	0
NZ_CP047173.1\|WP_159984370.1\|1542844_1544533_+\|DNA-repair-protein-RecN	gnl\|CDD\|223571	COG0497, RecN, ATPase involved in DNA repair [DNA replication, recombination, and repair].	8.34775e-165
NZ_CP047173.1\|WP_159984371.1\|1546322_1546961_+\|NUDIX-domain-containing-protein	gnl\|CDD\|239516	cd03424, ADPRase_NUDT5, ADP-ribose pyrophosphatase (ADPRase) catalyzes the hydrolysis of ADP-ribose and a variety of additional ADP-sugar conjugates to AMP and ribose-5-phosphate. Like other members of the Nudix hydrolase superfamily, it requires a divalent cation, such as Mg2+, for its activity. It also contains a highly conserved 23-residue Nudix motif (GX5EX7REUXEEXGU, where U = I, L or V) which functions as a metal binding site/catalytic site. In addition to the Nudix motif, there are additional conserved amino acid residues, distal from the signature sequence, that correlate with substrate specificity. In humans, there are four distinct ADPRase activities, three putative cytosolic enzymes (ADPRase-I, -II, and -Mn) and a single mitochondrial enzyme (ADPRase-m). Human ADPRase-II is also referred to as NUDT5. It lacks the N-terminal target sequence unique to mitochondrial ADPRase. The different cytosolic types are distinguished by their specificities for substrate and specific requirement for metal ions. NUDT5 forms a homodimer.	1.37054e-40
NZ_CP047173.1\|WP_159986703.1\|1544566_1546330_+\|CTP-synthase	gnl\|CDD\|235437	PRK05380, pyrG, CTP synthetase; Validated.	0
NZ_CP047173.1\|WP_159984374.1\|1549779_1550376_+\|SMC-Scp-complex-subunit-ScpB	gnl\|CDD\|377219	pfam04079, SMC_ScpB, Segregation and condensation complex subunit ScpB. This is a family of prokaryotic proteins that form one of the subunits, ScpB, of the segregation and condensation complex, condensin, that plays a key role in the maintenance of the chromosome. In prokaryotes the complex consists of three proteins, SMC, ScpA (kleisin) and ScpB. ScpB dimerizes and binds to ScpA. As originally predicted, ScpB is structurally a winged-helix at both its N- and C-terminal halves. IN Bacillus subtilis,one Smc dimer is bridged by a single ScpAB to generate asymmetric tripartite rings analogous to eukaryotic SMC complex ring-shaped assemblies.	5.54214e-56
NZ_CP047173.1\|WP_159984375.1\|1550362_1551535_+\|pseudouridine-synthase	gnl\|CDD\|224108	COG1187, RsuA, 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases [Translation, ribosomal structure and biogenesis].	6.57541e-79
NZ_CP047173.1\|WP_159984378.1\|1556485_1556746_-\|hypothetical-protein	gnl\|CDD\|381685	cd10035, UDG_like, uncharacterized family of the uracil-DNA glycosylase superfamily. Uracil-DNA glycosylases (UDGs) initiate repair of uracils in DNA. Uracil may arise from misincorporation of dUMP residues by DNA polymerase or via deamination of cytosine. Uracil in DNA mispaired with guanine is one of the major pro-mutagenic events, causing G:C->A:T mutations; thus, UDG is an essential enzyme for maintaining the integrity of genetic information. UDGs have been classified into various families on the basis of their substrate specificity, conserved motifs, and structural similarities. Although these families demonstrate different substrate specificities, often the function of one enzyme can be complemented by the other. UDG family 1 is the most efficient uracil-DNA glycosylase (UDG, also known as UNG) and shows a specificity for uracil in DNA. UDG family 2 includes thymine DNA glycosylase which removes uracil and thymine from G:U and G:T mismatches, and mismatch-specific uracil DNA glycosylase (MUG) which in Escherichia coli is highly specific to G:U mismatches, but also repairs G:T mismatches at high enzyme concentration. UDG family 3 includes Human SMUG1 which can remove uracil and its oxidized pyrimidine derivatives from, single-stranded DNA and double-stranded DNA with a preference for single-stranded DNA. Pedobacter heparinus SMUG2, which is UDG family 3 SMUG1-like, displays catalytic activities towards DNA containing uracil or hypoxanthine/xanthine. UDG family 4 includes Thermotoga maritima TTUDGA, a robust UDG which like family 1, acts on double-stranded and single-stranded uracil-containing DNA. UDG family 5 (UDGb) includes Thermus thermophilus HB8 TTUDGB which acts on double-stranded uracil-containing DNA; it is a hypoxanthine DNA glycosylase acting on double-stranded hypoxanthine-containing DNA except for the C/I base pair, as well as a xanthine DNA glycosylase which acts on both double-stranded and single-stranded xanthine-containing DNA. UDG family 6 hypoxanthine-DNA glycosylase lacks any detectable UDG activity; it excises hypoxanthine. Other UDG families include one represented by Bradyrhizobium diazoefficiens Blr0248 which prefers single-stranded DNA and removes uracil, 5-hydroxymethyl-uracil or xanthine from it.	0.00064737
NZ_CP047173.1\|WP_159984369.1\|1541915_1542839_+\|NAD-kinase	gnl\|CDD\|235121	PRK03372, ppnK, inorganic polyphosphate/ATP-NAD kinase; Provisional.	1.14785e-153
NZ_CP047173.1\|WP_159984368.1\|1541055_1541868_+\|TlyA-family-rRNA-(cytidine-2'-O)-methyltransferase	gnl\|CDD\|224110	COG1189, COG1189, Predicted rRNA methylase [Translation, ribosomal structure and biogenesis].	5.67671e-88
NZ_CP047173.1\|WP_159984373.1\|1548947_1549790_+\|segregation/condensation-protein-A	gnl\|CDD\|224273	COG1354, scpA, Rec8/ScpA/Scc1-like protein (kleisin family) [Replication, recombination, and repair].	2.11552e-44
NZ_CP047173.1\|WP_159984367.1\|1533334_1534645_+\|tyrosine--tRNA-ligase	gnl\|CDD\|235645	PRK05912, PRK05912, tyrosyl-tRNA synthetase; Validated.	0
NZ_CP047173.1\|WP_159984372.1\|1548076_1548964_+\|AAA-family-ATPase	gnl\|CDD\|224113	COG1192, Soj, ATPases involved in chromosome partitioning [Cell division and chromosome partitioning].	1.4591e-81
NZ_CP047173.1\|WP_159986704.1\|1546957_1547866_+\|site-specific-tyrosine-recombinase-XerD	gnl\|CDD\|234713	PRK00283, xerD, tyrosine recombinase.	1.68349e-137
NZ_CP047173.1\|WP_159984377.1\|1555576_1556143_-\|TetR-family-transcriptional-regulator	gnl\|CDD\|366102	pfam00440, TetR_N, Bacterial regulatory proteins, tetR family.	0.00198541

>NZ_CP047173.1|WP_159986704.1|1546957_1547866_+|site-specific-tyrosine-recombinase-XerD
MTPAAIADAFLRQASVERGLSAHTIAAYRRDLGLYLGWLEERGVADLAALRRSDVGAFASWLAARAERPLAASSRARILSSVRGLHRFALEEGHVADDVAHDVVPPKLPMTLPKAITVEQMGALLDAARGEELADLRDRALLELLYATGARISEAVDLSVDDVVDSEVVRLTGKGSKQRMVPLGSLAREAVEDYLVRARPELSRRGRATPALFLGVRGNRLSRQSAWLLIRAVAEKAGLDREISPHTFRHSFATHLLAGGADVRVVQELLGHASVATTQIYTLVTADSLRDVYTTAHPRARR
>NZ_CP047173.1|WP_159984371.1|1546322_1546961_+|NUDIX-domain-containing-protein
MTDAREPLADELVEPEILTSERVFDGMVWGVRAETFRYGDGELRREFLDHTGAVAVLALDDEDRVALIKQYRHPVRTREWEIPAGLLDIEGEDALLAAQRELGEEIDVQAAQWDLLSEFATSPGGSDEVIRIYLARDLSATDAVFAREAEEADMELRWVALDEVVDAVLARRVQNPSLCLAALAAHAFRARGWAGLGDASSPWTRHPRARRG
>NZ_CP047173.1|WP_159986703.1|1544566_1546330_+|CTP-synthase
MLRWNPVVDNSNSGPSSSPSDTSAAGRDTAPAKVTKHIFVTGGVVSSLGKGLTAASLGNLLTARGLRVVMQKLDPYLNVDPGTMNPFQHGEVFVTDDGAETDLDIGHYERFLDINLNQAANVTTGQIYSRVIARERAGEYLGDTVQVIPHITDEIKRRMRLQAEDDPQPDVIITEIGGTVGDIESQPFIESARQVRHELGRRNVFFVHVSLVPFMGASGEQKTKPTQHSVAALRSIGIQPDALVLRSDRPVSESNKRKIALMCDVDEQAVVNAKDVASIYEIPSMLNEQGLDSYIIDQLDLSAGEVVWDGWSQLLEAVHEPKHEVTIGLVGKYIDLPDAYLSVTEALRAGGFAQQTKVVLRWIASDGLEDPEAAAKALSDLDGICVPGGFGIRGIEGKLGALRFARENGIPTLGLCLGLQCMVIEYARNEAGLEGASSSEFDPETEFPVIATMAEQVEILASGDMGGTMRLGLYPADLAEGSIVAEVYGAPRASERHRHRYEVNNGYRDRIAEAGLWFSGTSPDGSLVEYVELPRDKHPYYVGTQAHPELRSRPNNAHPLFRGLVTAALERQEASRLFPASEAGSDD
>NZ_CP047173.1|WP_159984370.1|1542844_1544533_+|DNA-repair-protein-RecN
MLEELQIRDLGVIAEATLPLGPGFTAVTGETGAGKTMVVTALGLVLGARSDASAVRSGSKQAWVSGRWLVPEEGAVADRVHDAGGDLDGPELLLARSVSAEGRGRAVVGGRSAPVSVLSELADQLVVVHGQSDQIRLRSAAAQRDALDRFGGPELGEALRDYASAFERWRANREELDGLTVAREARAREAERLRSALAEIEGVAPQRGEDVELSAQSERLGSIEQLRVSAGEAREAISSEELDGRDALSLVETARRVLERAAEHDAALEPLTQTLTEASVLLGDAAAGLSSYLAELDLDGAHDLELIENRRAELSALARTYGPTLDDVLDLVDSSGLRLLELDGDDERIAALEADTAADAELVDRLAGRLTELRTAAAAELGDRVSDELTALAMADARLHVRVTALGEPAMHGRDTVEMLLQPHTGATPRALAKGASGGELSRVMLAIEVVVAANDPVPTFVFDEVDAGVGGAAAIEIGRRLARLAETSQVIVVTHLAQVAAFATNHLRVEKGSDGSVTSSAVTQLDAEERVSEMARLLSGLTDSENALAHARELLESSRRG
>NZ_CP047173.1|WP_159984369.1|1541915_1542839_+|NAD-kinase
MQSPPGERNILVIAHTGRADSLDAAILVVERLRGSGARPVLCADDKGDIVRAASDLSDVAVLGADVPLDAIELVFVLGGDGTILRAAEIARTGTAPLLGVNLGHVGFLAESERDDLDDAVARALDGDYRVEERMTLQVRVKIEDAVVYETWALNEATVEKASRERMLEVMVGVDGRPLSSFGCDGIVVSTPTGSTAYAFSGGGPVVWPTLDAMLLVPLSAHALFARPLVVGPDSSLAVEVKERTDGVGVLWADGRRTYELPPGARVVFRRSPVPVRFARLHDAPFTDRLVQKFGLPIRGWRGSAETE
>NZ_CP047173.1|WP_159984368.1|1541055_1541868_+|TlyA-family-rRNA-(cytidine-2'-O)-methyltransferase
MTHAEDQRLDSALATRGIARSRVHAARLIADGVVTVDGAPALKPSIRVRPEQDIAVASLDHYVSRAAHKLIAALDTFRSVRVDGAMALDVGASTGGFSQVLLERGVASVIALDVGHGQLAPRIRSDDRVSVVEGFNAREMTTESLAAAAGTDTVPDLVVADVSFISLSMVLPAVAASVASTADFVVLVKPQFEVGRLGIKEGIVRDPELRREALSDVLWSAWDVGLGVAGLIESPLPGGAGNQEYLAHLHRDRGTIPTEWRDAVTALTTG
>NZ_CP047173.1|WP_167306099.1|1540903_1541059_+|hypothetical-protein
MSEDRASGSESVELGDRLDDIERSALASRAAAYAEVQEQLRVRLEGGDSAR
>NZ_CP047173.1|WP_159984367.1|1533334_1534645_+|tyrosine--tRNA-ligase
MTDQDFRGSATAPALDPSFENVWDELVWRGAVHVSTDAVALRELLAGDPITYYCGFDPTAPSLHLGNLVQLIVLRRLQLAGHRPLGLVGGSTGLIGDPRPTAERTLNSRETVVEWVSRLQAQVSRFLSTEGENPLRLVNNLDWTAPLSAIDFLREIGKHFRVGTMLKKDAVSARLNSDAGISYTEFSYQILQGLDYLELYRQHGCVLQTGGSDQWGNLTSGTDLIHRTEGVSVHAIGTPLVMNSDGTKFGKSEGNAVWLDPSLTSPYAFYQFWLNTDDRDVAARLKTFTYLPRVEIERLESASVEAPFKREAQRALASEVTTLVHGEAVTASVIAASAALFGRGSLDCIDADILRGALQAVTTVEATASTPVVQAFVEAGLVASLGEARRAIGQRGLSVNNTAVTDDAAVLGDLPLIDGIAVLRRGKKSFAGAFVS
>NZ_CP047173.1|WP_159984366.1|1532536_1533232_-|DNA-binding-protein
MFVITADQRDSRHDDDRVEQAITALVEAEEHAFVLPPERTAGDEFQFVLSRADAVVSVVLALHRTAHWSIGLGIGAIERPLPRTTRAARGEAYFAARRAVEAAKGRATRFALDPDSPAAAFPSVPDAQALFDPLLHLRDSRTPAGWEIVDLLDAGLTQKDAAEQLAVSPQAVSLRVRAASARADRPARDALTRLLTVVDRTLDPDGAASDDDSQAHPGRTDPDPEPERTPR
>NZ_CP047173.1|WP_159986702.1|1531907_1532510_-|hypothetical-protein
MLSAAVQSASWTGVVLVLLAGVAGAVLAVRLRRPSLAWISLGAAAAAFLLTGVGGSAAPPAVGLAVVVLAFALAVLGGGPVVLLTLDLATTDSRSGAHGGIMIAAAQRPTGPGAAPTAIGQPIEVLRGGTTIGVLERIATAGALIAGLPEGVAVIVAVKGVGRFSELASPEARERFIIGTLASLAWSAALGILARLYLAG
>NZ_CP047173.1|WP_159984372.1|1548076_1548964_+|AAA-family-ATPase
MTRKTDDKAELTGLEAPALGPTGRPLRDFPLPVELTGHGPARIISLCNQKGGVGKTTTTINLGATLAEYGRRVLAIDFDPQGALSAGLGVATYDAITIYDLLLGTVKDPSEAIRPTRVPGLDIIPANIDLSAAEVHLVNEVARETILARVLRKVSADYDVILIDCQPSLGLLTVNALTASHGVLIPLECEFFALRGVALLIETIDKVRDRLNPVIELDGILPTMYDSRTLHSREVLDRVVDAFGDSVLETVIGRTVKFPDASVSGVPITTFAPEHNAAKAYRKLARELISRGAVA
>NZ_CP047173.1|WP_159984373.1|1548947_1549790_+|segregation/condensation-protein-A
MARSPEAVLPRSADVDPAPAPRGFTLALSNFEGPFDLLLSLIAKQQVDITEIALSAVTDEFLSYLHGIDTAEGLDRASEFLVVAATLLDLKIAGLLPQGELVDAEDAAMLEARDLLFARLLQYRAFKQVSAWFAERIDAETGRHVRQVPLEEEFRAKKPELVWTLSPEDFAALAAVALAPREIPTVGLEHLHAPLISIREQAAYLVAMLRERTTATFGELVADADEKGVIVARFIAVLELYRHAAIAFEQPEPLGELTLQWVAEDWSDANLAHLGADYDR
>NZ_CP047173.1|WP_159984374.1|1549779_1550376_+|SMC-Scp-complex-subunit-ScpB
MTAESADGVAGAGTVAFEIDRAVEAILMIADEPQSLAALATALSRPIPVIRQSVERLAADFDGANGGIRRGFELREVGGGWRVYVRREYDSVVSDFVLTQNPTKLSQAALETLAVIAYKQPISRGQVAQIRAVNVDSVARTLLGRGLIAEVGSDPETGAVLYGTTEQLLVHLGLASLDELPKISPLLSDGRNGFDERA
>NZ_CP047173.1|WP_159984375.1|1550362_1551535_+|pseudouridine-synthase
MSAPDKPEGERLQKVLAAAGVASRRVVEEMIVARRIRVNGEVAGELGRRIDPANDRIEVDGVAVQLDTSRRYVMLNKPVGVVSSLSDENGRPDLRTYTQNFEERLFNVGRLDSETSGLLVLTNDGELAHVLAHPSFGVTKTYIAKVHGQVLPQTIAALTAGVELEDGTVAADKARLLGRPEGRSNASLVEITLHSGRNRVVRRMMAAVGHPVLELVRRQFGPLHLGSLRSGDLRDLTREELGALLTISRQGGEAPVEKPEPTRKASAGARRPRPETGGDRAVEGRGERRSEERSVRRSEERPVRRSDDRPERRSDDRPVRRSEERPERRSDDRGERRSDERAPRERPSDALRADERATAPQDRRRPSTGADRPDSSVRRSGQDKRRRPDR
>NZ_CP047173.1|WP_159986705.1|1551577_1552651_+|prephenate-dehydrogenase
MRTTGTVRVVGSGLLGASIGLGLASRGVDVVLDDASPASLSLAIDYGAGRAASAEDRPALIVVCVPPDVVAGVVERELAAFPEAVVTDVASVKMQPLRELRARGLDLSRYIGSHPMAGRERGGPVAARGDLFVGRPWVICRDGETPADALARVEALALDLGGSIIEMGPEEHDRSVGLVSHAPQVISSLLGQRLVDAPNDALRLAGQGVRDVSRLAASAPELWVQILGANREHVVAVLDAFRDDVAAVADALRDLDAPGARRLLAEHLAAGNAGVARLPGKHGQDQRFSTLIVLVDDTPGTLARLFVEIGEAGVNLEDVRLEHAEGRRVGLAEISVVPEAVGPLTEELTARGWRIAG
>NZ_CP047173.1|WP_159986706.1|1552689_1553487_+|(d)CMP-kinase
MTPARRAQQSIPEDGGAAPTRADGSRRDEAADFGAAVVVAIDGPAGSGKSSVSREAARRLDFEFLDTGAAYRALAWHGLDTGLDFADENAIVDALDGFDYSIGTDPETYSVWVGRTEVTAAIREPRVTAQVSAVAKVPEVRRRITLLFRRIIGETRKAGIIVEGRDITTAVAPSAGVRILLTASEEARMARRSREVTTQSAEATGQALRSRDRADSQVVDFMNAADGVTLLDSTHLDFEQTVDAVIAEVRTSRARAEHGTGHARR
>NZ_CP047173.1|WP_159984376.1|1553461_1554982_+|ribosome-biogenesis-GTPase-Der
MAQDTHVGDDELNFGDDDLVERLGDLDEQLASSRAQALRSGLEDYDLDEEDRDLLEYASDDPDEVRYLPALPVVAIVGRPNVGKSALVNRIIGRREAVVEDTPGVTRDRVSYKADWLDRQFTIVDTGGWEPDARGIDASVAMQAEIAIDLADAVIFVVDANVGATATDEHVVKLLRKTKKPVFLAANKVDDARQEPNAASLWSLGLGEPYPVSAVHGRGVADLLETVLKTLPLESLVAKREVGGPRRVAILGRPNVGKSSLLNKAAGEERVVVNELAGTTRDPVDEQVEIAGKIWRFVDTAGIRRRVHLQQGADFYASLRTSTALEKAEVAVVVIDVSEPISEQDVRIIDLVLESGRALVLAFNKWDLLDDERRRYLEREIEKDLAHVAWAPRVNISAKTGRHLEKLVPALELALESWDTRIPTGKFNAFLAELTAAHPHPLRGGKQPRVLFGTQASSRPPTFVLFTTGFLDPGYRRYIARRLREIYGFQGSPVNVNMRVREKRAR
>NZ_CP047173.1|WP_159984377.1|1555576_1556143_-|TetR-family-transcriptional-regulator
MALHRAIIDLATARDVSSLTVSEITDRAGVNRSTFYAHATSAAELLCAALGDELDAIRDDYLGTLRSGAATDATIRHGTARILGHLEGRRELYLRAFDAAGGDSGVRAMLAGHFRAAVLATLETGSLDLPDGDGLGAFLPDATASFLASGSAGLMEEWLRLPAPRTPETYLAAYRRLLPSWWPFATQD
>NZ_CP047173.1|WP_159984378.1|1556485_1556746_-|hypothetical-protein
MPCAMADLVLDLAPSIEVVLLQGADADHGWRRLLRLHPGIERERGLAVVRTFHPSPQALFTKDTAERAARVARREAAFAEVAALLR
>NZ_CP047173.1|WP_159984379.1|1556755_1558213_-|hypothetical-protein
MTSPLALVVLVTAVSSGVWFLTQGGVGGGPSGAPTVRIGGFVLGLSLILVALTAQRGSPLRLQPADVSWVLQSPSGPRIVLMVHASGTAAIAFVSTSAASATALVLRGGPVAWGVLSGCAMAAVLLLVRATSLTSHLLGRTIRPSRRRYALACVLTAGVVWISLWAQSLIVGEDSIGSASMSIAGLLFEVILVPEASGVEHASAAIGVLLLSSIAVGLLVRRAGIFIEPAVEESILANQLTRILSGESNRTLAGRGYAVGRSSWVRWPDSAVGAVLASHLAQARRRRWQEPRTALALLAVAVLSSLVRDDVPMPLSGLLLVLILALPGPSQATAQDLDHQHLPLADVSIARAGFAGVGLHALISLTVSLPAVVLWASVYLHGVGWGLLAILPLALCCMNAGLTGVGSRAFSDLLLGRVVVAVALSLLPVAGAASNLARYDQGHDALRVLVTLFGVLLISCLLSSGLAWAVLESARPARSSRAPAV

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Crispr_ID: NZ_CP047173_7

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP047173_7

1586300-1586433

Orphan

Consensus_repeat	Method
GCGAGCCGGAGGTGTGGGGGCCGCGGGTTCGGCTCGTGAAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP047173_7

>merge|NZ_CP047173|7|1586300-1586433|CRISPRCasFinder
GCGAGCCGGAGGTGTGGGGGCCGCGGGTTCGGCTCGTGAAAGGTCGTCCGGCTCGCGGGATTCGGCGGTTCTGGCGTGCCGGAGGTGATTTCGCGAGCCGGAGGTGATGGGGGCCGCGGGTTCGGCTCGTGAAA

>NZ_CP047173|7|7|1586300-1586433|CRISPRCasFinder
GCGAGCCGGAGGTGTGGGGGCCGCGGGTTCGGCTCGTGAAA	GGTCGTCCGGCTCGCGGGATTCGGCGGTTCTGGCGTGCCGGAGGTGATTTCG
CGAGCCGGAGGTGATGGGGGCCGCGGGTTCGGCTCGTGAAA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP047173.1\|WP_159984404.1\|1588357_1589677_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|214519
NZ_CP047173.1\|WP_159984400.1\|1583875_1584886_-\|zinc-binding-dehydrogenase	unknown	unknown	gnl\|CDD\|176190
NZ_CP047173.1\|WP_159984407.1\|1592408_1593302_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|237907
NZ_CP047173.1\|WP_159986709.1\|1580937_1581693_+\|triosephosphate-isomerase	unknown	unknown	gnl\|CDD\|238190
NZ_CP047173.1\|WP_159984405.1\|1589981_1590647_-\|TetR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|379883
NZ_CP047173.1\|WP_159984397.1\|1577135_1578509_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|131385
NZ_CP047173.1\|WP_159984410.1\|1596183_1597872_+\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|173857
NZ_CP047173.1\|WP_159984395.1\|1575429_1576146_-\|DUF4232-domain-containing-protein	unknown	unknown	gnl\|CDD\|379419
NZ_CP047173.1\|WP_159984398.1\|1580386_1580887_+\|ribose-5-phosphate-isomerase	unknown	unknown	gnl\|CDD\|376799
NZ_CP047173.1\|WP_159984401.1\|1584917_1585307_-\|DUF1304-family-protein	unknown	unknown	gnl\|CDD\|377753
NZ_CP047173.1\|WP_159984406.1\|1590760_1592269_+\|DHA2-family-efflux-MFS-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|129794
NZ_CP047173.1\|WP_159984399.1\|1582507_1583398_+\|NAD(P)-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|374872
NZ_CP047173.1\|WP_159986710.1\|1581770_1582511_+\|TIM-barrel-protein	unknown	unknown	gnl\|CDD\|366542
NZ_CP047173.1\|WP_159984396.1\|1576215_1576950_-\|FCD-domain-containing-protein	unknown	unknown	gnl\|CDD\|225097
NZ_CP047173.1\|WP_159986711.1\|1597913_1598912_+\|ABC-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|223674
NZ_CP047173.1\|WP_159984402.1\|1585423_1586005_+\|TetR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|366102
NZ_CP047173.1\|WP_159984411.1\|1598908_1599805_+\|ABC-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|224094
NZ_CP047173.1\|WP_159984403.1\|1586744_1588181_-\|argininosuccinate-synthase	unknown	unknown	gnl\|CDD\|235434
NZ_CP047173.1\|WP_159984409.1\|1594921_1596112_+\|acyl-CoA-dehydrogenase	unknown	unknown	gnl\|CDD\|224871
NZ_CP047173.1\|WP_159984408.1\|1593752_1594925_+\|LLM-class-flavin-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|238527

Protein	Function_ID	Function_description	E-value
NZ_CP047173.1\|WP_159984404.1\|1588357_1589677_+\|hypothetical-protein	gnl\|CDD\|214519	smart00108, B_lectin, Bulb-type mannose-specific lectin.	5.01632e-17
NZ_CP047173.1\|WP_159984400.1\|1583875_1584886_-\|zinc-binding-dehydrogenase	gnl\|CDD\|176190	cd05288, PGDH, Prostaglandin dehydrogenases. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES.	4.9528e-161
NZ_CP047173.1\|WP_159984407.1\|1592408_1593302_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|237907	PRK15092, PRK15092, DNA-binding transcriptional repressor LrhA; Provisional.	1.07094e-29
NZ_CP047173.1\|WP_159986709.1\|1580937_1581693_+\|triosephosphate-isomerase	gnl\|CDD\|238190	cd00311, TIM, Triosephosphate isomerase (TIM) is a glycolytic enzyme that catalyzes the interconversion of dihydroxyacetone phosphate and D-glyceraldehyde-3-phosphate. The reaction is very efficient and requires neither cofactors nor metal ions. TIM, usually homodimeric, but in some organisms tetrameric, is ubiqitous and conserved in function across eukaryotes, bacteria and archaea.	2.43151e-64
NZ_CP047173.1\|WP_159984405.1\|1589981_1590647_-\|TetR-family-transcriptional-regulator	gnl\|CDD\|379883	pfam16859, TetR_C_11, Bacterial transcriptional repressor C-terminal. This family of bacterial transcriptional repressors is characterized by the short approximately 50 amino acid stretch of residues constituting the helix-turn-helix DNA binding motif, around the YRFhY motif. The target proteins that are repressed are involved in the transcriptional control of multi-drug efflux pumps, pathways for the biosynthesis of antibiotics, response to osmotic stress and toxic chemicals, control of catabolic pathways, differentiation processes, and pathogenicity. Another target protein is BetI, an osmoprotectant which controls the choline-glycine betaine pathway in E.coli.	6.84447e-22
NZ_CP047173.1\|WP_159984397.1\|1577135_1578509_+\|MFS-transporter	gnl\|CDD\|131385	TIGR02332, putative_4-hydroxyphenylacetate_permease, 4-hydroxyphenylacetate permease. This protein is a part of the Major Facilitator Superfamily (pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. ( as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.	3.99425e-77
NZ_CP047173.1\|WP_159984410.1\|1596183_1597872_+\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|173857	cd08492, PBP2_NikA_DppA_OppA_like_15, The substrate-binding component of an uncharacterized ABC-type nickel/dipeptide/oligopeptide-like import system contains the type 2 periplasmic binding fold. This CD represents the substrate-binding domain of an uncharacterized ATP-binding cassette (ABC) type nickel/dipeptide/oligopeptide-like transporter. The oligopeptide-binding protein OppA and the dipeptide-binding protein DppA show significant sequence similarity to NikA, the initial nickel receptor. The DppA binds dipeptides and some tripeptides and is involved in chemotaxis toward dipeptides, whereas the OppA binds peptides of a wide range of lengths (2-35 amino acid residues) and plays a role in recycling of cell wall peptides, which precludes any involvement in chemotaxis. Most of other periplasmic binding proteins are comprised of only two globular subdomains corresponding to domains I and III of the dipeptide/oligopeptide binding proteins. The structural topology of these domains is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. Besides transport proteins, the PBP2 superfamily includes the ligand-binding domains from ionotropic glutamate receptors, LysR-type transcriptional regulators, and unorthodox sensor proteins involved in signal transduction.	0
NZ_CP047173.1\|WP_159984395.1\|1575429_1576146_-\|DUF4232-domain-containing-protein	gnl\|CDD\|379419	pfam14016, DUF4232, Protein of unknown function (DUF4232). This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are typically between 177 and 242 amino acids in length. Many members of this family are lipoproteins.	5.05281e-08
NZ_CP047173.1\|WP_159984398.1\|1580386_1580887_+\|ribose-5-phosphate-isomerase	gnl\|CDD\|376799	pfam02502, LacAB_rpiB, Ribose/Galactose Isomerase. This family of proteins contains the sugar isomerase enzymes ribose 5-phosphate isomerase B (rpiB), galactose isomerase subunit A (LacA) and galactose isomerase subunit B (LacB).	7.762e-57
NZ_CP047173.1\|WP_159984401.1\|1584917_1585307_-\|DUF1304-family-protein	gnl\|CDD\|377753	pfam06993, DUF1304, Protein of unknown function (DUF1304). This family consists of several hypothetical bacterial proteins of around 120 residues in length. The function of this family is unknown.	6.01848e-28
NZ_CP047173.1\|WP_159984406.1\|1590760_1592269_+\|DHA2-family-efflux-MFS-transporter-permease-subunit	gnl\|CDD\|129794	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. [Cellular processes, Toxin production and resistance, Transport and binding proteins, Other].	1.1491e-63
NZ_CP047173.1\|WP_159984399.1\|1582507_1583398_+\|NAD(P)-binding-domain-containing-protein	gnl\|CDD\|374872	pfam16896, PGDH_C, Phosphogluconate dehydrogenase (decarboxylating) C-term. PGDH_C is the C-terminal domain of putative bacterial phosphogluconate dehydrogenase proteins.	1.99869e-67
NZ_CP047173.1\|WP_159986710.1\|1581770_1582511_+\|TIM-barrel-protein	gnl\|CDD\|366542	pfam01261, AP_endonuc_2, Xylose isomerase-like TIM barrel. This TIM alpha/beta barrel structure is found in xylose isomerase and in endonuclease IV (EC:3.1.21.2). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae.	1.81913e-18
NZ_CP047173.1\|WP_159984396.1\|1576215_1576950_-\|FCD-domain-containing-protein	gnl\|CDD\|225097	COG2186, FadR, Transcriptional regulators [Transcription].	1.45544e-53
NZ_CP047173.1\|WP_159986711.1\|1597913_1598912_+\|ABC-transporter-permease-subunit	gnl\|CDD\|223674	COG0601, DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism].	3.2025e-93
NZ_CP047173.1\|WP_159984402.1\|1585423_1586005_+\|TetR-family-transcriptional-regulator	gnl\|CDD\|366102	pfam00440, TetR_N, Bacterial regulatory proteins, tetR family.	2.35554e-08
NZ_CP047173.1\|WP_159984411.1\|1598908_1599805_+\|ABC-transporter-permease-subunit	gnl\|CDD\|224094	COG1173, DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism].	5.6732e-77
NZ_CP047173.1\|WP_159984403.1\|1586744_1588181_-\|argininosuccinate-synthase	gnl\|CDD\|235434	PRK05370, PRK05370, argininosuccinate synthase; Validated.	0
NZ_CP047173.1\|WP_159984409.1\|1594921_1596112_+\|acyl-CoA-dehydrogenase	gnl\|CDD\|224871	COG1960, CaiA, Acyl-CoA dehydrogenases [Lipid metabolism].	3.41808e-43
NZ_CP047173.1\|WP_159984408.1\|1593752_1594925_+\|LLM-class-flavin-dependent-oxidoreductase	gnl\|CDD\|238527	cd01094, Alkanesulfonate_monoxygenase, Alkanesulfonate monoxygenase is the monoxygenase of a two-component system that catalyzes the conversion of alkanesulfonates to the corresponding aldehyde and sulfite. Alkanesulfonate monoxygenase (SsuD) has an absolute requirement for reduced flavin mononucleotide (FMNH2), which is provided by the NADPH-dependent FMN oxidoreductase (SsuE).	1.09147e-77

>NZ_CP047173.1|WP_159984402.1|1585423_1586005_+|TetR-family-transcriptional-regulator
MGRTQSFDTDQVIRSARGVFWDRGFEEASLPELEAATGLGRSSLYHAFGSKRGLFDAAVQSYLDEIVRPRLEPLTRGDVDPDALADYFAGLRDALADPRTVSAQSGCLLLNAAGAPIARDDAVREVIAEYRAELQRAMLAGARARWPEASAEWSGRQAGVLVSLLVTSLVLARVDPGQAVATAASALGLVRVG
>NZ_CP047173.1|WP_159984401.1|1584917_1585307_-|DUF1304-family-protein
MIVLGLVLAALAALLHVYIFVLESLLWTTPRARSTFGTTAGEAEATRELAFNQGFYNLFLAIVTIVGVIVLATGATNVGAALVFTGTGSMVAAALVLLLSSPGKRRAALTQMTPGLLAVLALGIGLAAS
>NZ_CP047173.1|WP_159984400.1|1583875_1584886_-|zinc-binding-dehydrogenase
MTTVTSTQIQLVRRPVGWPVAEDFRTAQVEYDAPAAGEIRVENAFLSVDPYMRGRMNDVKSYTPPYALGETMTGGAIGRVTVSSDPDFPVGAVVLHQLGWRDIVQAETSAFRVVPEIPGAPLSLRLGVLGMTGLTAFVGLTTIAGLKEGDTVFVSGAAGAVGSAAGQIARLLGAKRVIGSAGSAEKVALLTEKYGYDAAFDYHAGPVREQLAAAAPEGIDVYFDNVGCDHLEAALDAFNDGGRAALCGAIAGYNSTEKPAGPDNMANVITRGLTLRGFTLAAYLDHAPEFNRLMGGWFQEGSIAYDETVVDGIDHAVDAFLSMMRGGNTGKMVVRL
>NZ_CP047173.1|WP_159984399.1|1582507_1583398_+|NAD(P)-binding-domain-containing-protein
MTDTTATPAAGTAASALTVAVIGAGGKMGMRVSNNLQKSDYNALYSEASPAGQERTREAGREITATADAVKDADVVILAVPDVVLGAVSEDVIPQMKSGAIILTLDPAAAYAGLLAKREDIHYAVAHPCHPSVFLERTTPEEWADTFGGIAAPQEVVAALEDADDDVRAIAEKVISTIYAPVIAVHWVTVKQLAVLEPTLVETIACMIGEFLKEALEETVNGVGVPYEAARAMLYGHTWIALTNGLRGSNPFSEACHIAMGYGREALIKDDWKKIFDDSELDSVIAKMLKIDAVKR
>NZ_CP047173.1|WP_159986710.1|1581770_1582511_+|TIM-barrel-protein
MVRETAALGVGLLQLCDVPALEDCSDEQLAALRELAAAEGVALELGTRGTDPEHLRRWLRLARALDVVLLRSMWTSGEDRPDRAETLRRLGEIAPELEEAGVTLALETYEQVSTAELVDVIATLDHPRIRICLDPANTVANLELPADVTARCAPYVANWHVKDFDFSRNPGWVGFVYTGTALGDGRLDYDGMLALLQPEARGISQIIEFWLPWQDTVPAEEQALVTTRLEAEWVTTTLDQLRRRNP
>NZ_CP047173.1|WP_159986709.1|1580937_1581693_+|triosephosphate-isomerase
MYFGHERTLAWMRRIAEIARTHEAVASGAVELFVVPTFPALVPVGALAAEAGVALGAQDLYWEDAGAFTGEVSGAELREIGCRLVEIGHAERRALFGDDDERVRAKVAAAFRNDLVPLLCVGETERGSVDDAVAVVLAQIDSALADAVEAGADGPILAAYEPVWAIGAPEPAEPAFIAGVVTALEAALAQLPGRAGSRVIYGGSAGPGLLTALEGRVPGLFLGRFAHDPEAVGAILDEALALARAGAEVRP
>NZ_CP047173.1|WP_159984398.1|1580386_1580887_+|ribose-5-phosphate-isomerase
MSAPFRLVIGSDDAGFDYKEIVKADLENDSRVASVVDVGVDASSHTPYPSVAIAAAEMVARGDADRAILICGTGLGVAIAANKVAGIRAVTAHDSFSVERSILSNDAQVLCMGQRVVGIELARRLAKEWLGYEFDTSSASAEKVRVIEAYEAGHPVEDDAATVGSC
>NZ_CP047173.1|WP_159984397.1|1577135_1578509_+|MFS-transporter
MDLPSRPGGTATADAAVEKSAIRKVSIRLVPFVALMFFINYLDRTAIGFAAPNGMEMDLALSAAQFGFASGVFFIGYILLEVPSNLALHRFGARRWLARIMVSWGIVALLFTWVQNFEQLVALRFLLGVAEAGFFPGAILFLSLWVPAKHRSKILALFYLAQPLTTVIGAPLAGLLIEQDGILGLEGWRFMFLGVSLPAIVVGVIAWFYLKDKPSDAKWLTREEQVWLTTALQREEDVKTKGVTTHPKMSSAFKSGRVWMLSFVYFGFIYGLYALAFFLPTIIEGFQEQYGTTFGIFEKGLITAIPYVPAAIALYLWSRDATRRGVRTWHIVIPAIAGGLSIPLALFAGSPAATIAVITVTAMAIFSALPNFWTFPTRFLTGAAAAAGIALINTVGNLAGFSAPYITGALKDATGGYQVPMFIVGFFLLLSAVLMTLLARRYKDAPLDAPSVDVIAH
>NZ_CP047173.1|WP_159984396.1|1576215_1576950_-|FCD-domain-containing-protein
MPAYPEDDPSLVRLELQALPRGTAVAEVAKQLTSLLTRGDLVPGSRLPPERQLAESLGVGRSAVREALAALEILGIVTVRPGSGTYLRDSTSELLPTTLSWGLMLSAGRTAELIEVRGTLEVQAAMLAALRIDDEGLARLHAHLEAMESHLDDIAAFVEADVRFHLQIAVSAENVVLRDLLQTIRSLLRLWVERALSSPQQALDAFTEHRAVLEAIEARDPAAAARAMEAHMSTASRRLADTGS
>NZ_CP047173.1|WP_159984395.1|1575429_1576146_-|DUF4232-domain-containing-protein
MSDLLRRGAAAALTLAAVGLLVTGCAGRADIASTTSPLPRPSATNTATPTAAPTATASAPASIVPSAAPTTAPTAEPTAAPEPPAPLPTASQPPAPEPSTVRCVGSDLSLEYRADPDASGAGSSAFDLIFTNTTDRTCTLAGIPGVYAAGADGGRLGADASADGPNPSGLLALAPAAQADVRVAWHSPGAFGCPTATSTFLVAEVIDAADAAVRAPAAIEVCTDSTVFLDASTYTLLG
>NZ_CP047173.1|WP_159984403.1|1586744_1588181_-|argininosuccinate-synthase
MSKVLSSLPVGERVGIAFSGGLDTSVAVAWMREKGAVPCTYTADLGQPDETDIDSVPSRAAQFGAEISRLVDAKTALVEEGLVALQCGAFHIRSGGKTYFNTTPLGRAVTGTLLVRAMREDGVDIWGDGSTYKGNDIERFYRYGLLANPRLRIYKPWLDVQFVNELGGRTEMSEWLVARGFPYRDATEKAYSTDSNIWGATHEAKRLEELSSGLELVEPIMGVAAWREDVEIAAETVSVRYEAGRPVALNGVEYADPVELVLEANRIGGRHGLGNSDQIENRIIEAKSRGIYEAPGMALLHLTYERLLNAIHNEDTIAQYHSEGRRLGRLMYEGRWLDPQSLMLRESLQRWVGSAVTGEVTVRLRRGDDYTILDTTGPALSYHPDKLSMERVGDAAFGPEDRIGQLTMRNLDIADSRSRLEQYAAAGLVGGPTAELVGHLEIGEADAITEGNGSAAADALGRATDLASEGAAFDSGTD
>NZ_CP047173.1|WP_159984404.1|1588357_1589677_+|hypothetical-protein
MPPPSTGRLAALTLACLLAAGGAVVLAPGASALAAVSSEPTSSQATGAVERRSADALVGGESLAQGESLTSPSGEYSFLMQTDGNAVVYRAGGGATWSTATQGRGDHLDMQTDGNAVIYSAGGQAVWSTVTSGDAGALLALEDDGDLVVRRADGSVAWSSSAGQAPPAVTDTLTGGSDLRGGQQLVSTDGGSRAAMQTDGNFVVYSGGSARWSAVTSGAGNRLAMQGDGNAVVYANVGAPLWSSVTSGNPGARMVMQDDGNLVIYSGGRAIWASTAPAPAPAPAPQSGDVLPAGSDLRRGQQLVSSDGKSRAAMQNDGNFVVYTGARVRWSAGTAGAGDRLAMQGDGNAVVYSASGRALWQTGTDGRPGARMVMQNDGNLVVYSSSGALWSSNPGDVVDCDSFRSQAEAQEWFDRYRGYDDPGRLDGDNDGRACQAHRY
>NZ_CP047173.1|WP_159984405.1|1589981_1590647_-|TetR-family-transcriptional-regulator
MTPPPPPAATPSAAAADCDAPARPGRRRDPNRDGEILTAALDVLAETGYDGMTIDMVAARAKAGKATLYRRWESKAELVLEAVACLKGADLDQDALPDTGTLRGDLVALIRPRAIEDAERKLRIMSGVVAMISKAPELADAVRQAIVEPRARANRVILRRAIARGEIPADVDVDMLAVLTPSMVSYRVLLMREPVDRDYLISLVDNVLLPAVGLRGGDPGA
>NZ_CP047173.1|WP_159984406.1|1590760_1592269_+|DHA2-family-efflux-MFS-transporter-permease-subunit
MSQTTSLPDSAAPAVPAPSSRRWWTLVAVGLAQLMVVLDSTVVNIALPAAQADLGFSDGDRQWVVTAYSLAFGSLLLLGGRLSDLIGRKRTFVIGLIGFAIASALGGAAPNFELLIAARALQGVFGALLAPTALAVLTTTFTVPKERARAFGVFGAIAGAGGAVGLLLGGVLTESFDWRWNLYINVVIAVVAVIGAIVFVPTIDRVGPRPKLDVPGTILVSAALFGLVFGFANAETDGWDSPMTWVPLAAAVVLLVGFVLRQRTTEHPLLPLPIVLDRDRGAAYLSVLIAGAGMFGIFLFVTYYLQVSLGYSPIQTGLSFLPMIGMLVLAAQLSTNLLLPRFGPKIMVTFGMLLGVVGMLLLTRLDLDSGYAPDVLPALMVLGFAMGSIMPGSMQTATRGVDARFAGVASAMVNTSQQVGGSIGTALLNTLAATAVTDYLLTHTPTTAATAAEAAVQSYAVAYGWGAGFFALGAVLSVLLFRRRSAGLAVSTGASAEPVLAH
>NZ_CP047173.1|WP_159984407.1|1592408_1593302_+|LysR-family-transcriptional-regulator
MPETLDIVHLRTLVAIADCGGFGRAAVALHISQPTVSQHVRTLERRLERTFIEKVGRRARFTPAGERLLVQARRILAVHDDALELLDAASENPLALGLTEPAAEQLLPRLLETLHRAFDDRPLTFTLDRSTHLAEAVARGVVDLAVILGVGGDLPGRQVATLPLDWYSAPGWQPPEDAPIPLVAYSEPCGMRQRALQQLGAFGHEVRVVAESAGLEGVIAAARAGVGVAVLPTAHRGTVAEGLVVRHDLPALGSVNLRLVSRRGLAPDVEDTALAALAEVFGTVRARPVAVPAGARV
>NZ_CP047173.1|WP_159984408.1|1593752_1594925_+|LLM-class-flavin-dependent-oxidoreductase
MTVEFISAINVNHSNEVNGLADPAIDVAHLRRYSRILEDGGFDYTLVPYGSAGHDPFTIAAAVTQYTEHLKPIVALRPNTVYPTVAAKALATLDQLSGGRAVVHFIAGGNDHEQAREGDRLSKAERYARQEEYLRILRRVWSATEPFDHEGEYYRFEDFVSRVRPVRGTIPISVGGSSDEAYRQGGALADIFGLWGEPLADTQQQIDRIADAALAAGRADTPRTWVTFRPIIAPTEELAWEKAHRILGILQSRSGSAHPRKGEKGLWVQTPSATGPANVGSQRLLDIARRKDLHDRALWTPTATATGAAGASTALVGTPETVAAAILDYVDLGADLISIRGYDNLNDAVDYGRYVIPLVREELAHREATGRRGEIVAQPPLEAELAGAIA
>NZ_CP047173.1|WP_159984409.1|1594921_1596112_+|acyl-CoA-dehydrogenase
MTLLTGAPAAAVLPAADLSDRALARITARLAETAEHYDRTAEFPWRGIQAVHEAGLLSLGVGTRYGGSPASTVDLVRVFGALGQGDPAVALISAMTVLQHAAQDRAALWPEELYRSVLADSAERPVLLNTVRAEPEWGAPARGGLPATTIRRDGDGWLLEGRKGFATGSEGLAFHLVWAVDHGGASGEPELAHAIVPGDAPGVRIERTWDHLGQRASSTHDVVYEQVRLPLEHFRGTPRSQLAPEAGAAGGFGLAVAALYVGVGRAAQSFFVRFANERVPTSLGRPIATTERIRSVAGEIQAQLVQAEEVLLSLAARVDAGDPRTAERLVVGKLLATRSAVTAVETAVAALGNPGLTRHHPLERHLRDVLASRVHPPQDDAALLIAGTRSLAAAAL
>NZ_CP047173.1|WP_159984410.1|1596183_1597872_+|ABC-transporter-substrate-binding-protein
MTFHRSRSFRSRPLRRSGTAAAALALASALALSACSGASGAGAVSDDATPVDGGRLSLAFFPDNAAFSCVDPFQTYWIEHRTVIRNVADSLTDQDPETGEIQPWLATDWSVNDAGTEYTFDLRTDVTFSDGTPFTAESVKTSFDNDKATLAQLPSAYGGVYLAGYSGTEVVDADTVKVVFSTPNAAFLQGTSTTNLAILAAASYEKTPEERCLGGIVGSGPFTLTGYTPGTGITLDKRDGYAWGSALRENTGEAHLDGIDISYVAEDSVRVGQLTSDEIDIAWPRNPISENDQAVITGSGDTVESRSLPGPASNYYPNVAEGKILSDERVRQAVQKAIDRETYASTVFGAGYPAATSIYNTTTPFYTDESSALAFDAEGAAELLDEAGWELGDDGYRSKDGRRLTLSVPIVTQFGAGDQLIQDQLKQVGIELELNVITNAQRADVLNSGDYDLISTYYTRADPGVIQWIIDSRYAGSKAQATNGLDAEQAATVQALLDEGVQTVDTAARAEVYGELQDYLIDDALVFPFAERVQLAGVSSAVHGFRFTSEAFGDFADAWIQP
>NZ_CP047173.1|WP_159986711.1|1597913_1598912_+|ABC-transporter-permease-subunit
MAPGRPGTRSAPSGLGRYLLGRLGQAVLVLWAAYTVTFAVLWLLPSDPLALLLSANNVEVDSLTPQQLAEAQARYGLDQPVWQQYVTMLGDALRGDFGTSITKGIPVTDLIAEKLPGTLQLSALAIGLALIGGTVLAYLAAYVRWAPLKTLLGRLPSAGVAFPGFWIGLLLIQFFAFSLHLLPSTGSATPASLILPAVTMAIPTSAMLAQVLIRSFADVEAEAYITTARAKGLSRGAVQWRHAFRNASLPTLTILGILAGNTVTGAIVAETIFARQGIGTLAQESVLTQDVPVVQAIVVLAAVVFVGINLLVDLLYPLLDPRITSTPKASRP
>NZ_CP047173.1|WP_159984411.1|1598908_1599805_+|ABC-transporter-permease-subunit
MTLELTRPEALVVPEPLTRAAHGRGARRARILRLLLRRPGFVLALVFVLFVLASAIAPSLFTGVDPTATAPADKLQAPSLVHLFGTDELGRDLFARVLHGGALTVQATVIALAIALVGGLTLGVVSGSAGGVVDAVIMRVVDVLLAIPGLLLALAIVTAIGFGTLPVALAVGIGILPGFARTTRAEVLRVRTLPYVEAARTGGASRLSVLVRHVLPNSWGPVAVLAVLDLGTAIIAIAALSFLGFGAAPPAAEWGTLISSGRNYLVTSPWLSLLPGLFVGLLVFALNHVAKSLEEVQR

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Crispr_ID: NZ_CP047173_8

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP047173_8

2748130-2748218

Orphan

Consensus_repeat	Method
GCGAACGGGTTGTTGCCCGGGCGCGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP047173_8

>merge|NZ_CP047173|8|2748130-2748218|CRISPRCasFinder
GCGAACGGGTTGTTGCCCGGGCGCGGGGGCGTCGCGGGACGCTGGCCCATGCCCTGGTTGCTCGCGAACGGGTTGTTGCCCGGTCGCGG

>NZ_CP047173|8|8|2748130-2748218|CRISPRCasFinder
GCGAACGGGTTGTTGCCCGGGCGCGG	GGGCGTCGCGGGACGCTGGCCCATGCCCTGGTTGCTC
GCGAACGGGTTGTTGCCCGGTCGCGG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP047173.1\|WP_159985361.1\|2750433_2752197_-\|proline--tRNA-ligase	unknown	unknown	gnl\|CDD\|236405
NZ_CP047173.1\|WP_159985363.1\|2755611_2756694_-\|1-deoxy-D-xylulose-5-phosphate-reductoisomerase	unknown	unknown	gnl\|CDD\|235472
NZ_CP047173.1\|WP_167306109.1\|2754139_2755528_-\|site-2-protease-family-protein	unknown	unknown	gnl\|CDD\|100084
NZ_CP047173.1\|WP_159985349.1\|2739420_2739789_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP047173.1\|WP_159985360.1\|2749272_2750274_-\|transcription-termination/antitermination-protein-NusA	unknown	unknown	gnl\|CDD\|237061
NZ_CP047173.1\|WP_159985362.1\|2752288_2753446_-\|flavodoxin-dependent-(E)-4-hydroxy-3-methylbut-2-enyl-diphosphate-synthase	unknown	unknown	gnl\|CDD\|234737
NZ_CP047173.1\|WP_159986805.1\|2742528_2743407_+\|A/G-specific-adenine-glycosylase	unknown	unknown	gnl\|CDD\|224115
NZ_CP047173.1\|WP_159985347.1\|2737901_2738846_-\|bifunctional-riboflavin-kinase/FAD-synthetase	unknown	unknown	gnl\|CDD\|235536
NZ_CP047173.1\|WP_159985356.1\|2743453_2744875_+\|RNB-domain-containing-ribonuclease	unknown	unknown	gnl\|CDD\|223631
NZ_CP047173.1\|WP_159985364.1\|2756747_2757713_-\|peptidylprolyl-isomerase	unknown	unknown	gnl\|CDD\|365980
NZ_CP047173.1\|WP_159986804.1\|2738845_2739310_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP047173.1\|WP_159985345.1\|2736240_2737788_-\|DUF2867-domain-containing-protein	unknown	unknown	gnl\|CDD\|187556
NZ_CP047173.1\|WP_159985367.1\|2760125_2760602_-\|OsmC-family-peroxiredoxin	unknown	unknown	gnl\|CDD\|224678
NZ_CP047173.1\|WP_159985354.1\|2741877_2742477_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|180660
NZ_CP047173.1\|WP_159985351.1\|2739785_2740727_-\|tRNA-pseudouridine(55)-synthase-TruB	unknown	unknown	gnl\|CDD\|235113
NZ_CP047173.1\|WP_159985366.1\|2759354_2760110_+\|1-acyl-sn-glycerol-3-phosphate-acyltransferase	unknown	unknown	gnl\|CDD\|153251
NZ_CP047173.1\|WP_159985358.1\|2744871_2745327_-\|30S-ribosome-binding-factor-RbfA	unknown	unknown	gnl\|CDD\|234787
NZ_CP047173.1\|WP_159985353.1\|2740817_2741816_+\|2-dehydropantoate-2-reductase	unknown	unknown	gnl\|CDD\|235821
NZ_CP047173.1\|WP_159985359.1\|2748889_2749222_-\|DUF448-domain-containing-protein	unknown	unknown	gnl\|CDD\|377288
NZ_CP047173.1\|WP_159985365.1\|2757883_2759218_+\|aminotransferase-class-III-fold-pyridoxal-phosphate-dependent-enzyme	unknown	unknown	gnl\|CDD\|235685

Protein	Function_ID	Function_description	E-value
NZ_CP047173.1\|WP_159985353.1\|2740817_2741816_+\|2-dehydropantoate-2-reductase	gnl\|CDD\|235821	PRK06522, PRK06522, 2-dehydropantoate 2-reductase; Reviewed.	2.87708e-51
NZ_CP047173.1\|WP_159985363.1\|2755611_2756694_-\|1-deoxy-D-xylulose-5-phosphate-reductoisomerase	gnl\|CDD\|235472	PRK05447, PRK05447, 1-deoxy-D-xylulose 5-phosphate reductoisomerase; Provisional.	0
NZ_CP047173.1\|WP_167306109.1\|2754139_2755528_-\|site-2-protease-family-protein	gnl\|CDD\|100084	cd06163, S2P-M50_PDZ_RseP-like, RseP-like Site-2 proteases (S2P), zinc metalloproteases (MEROPS family M50A), cleave transmembrane domains of substrate proteins, regulating intramembrane proteolysis (RIP) of diverse signal transduction mechanisms. In Escherichia coli, the S2P homolog RseP is involved in the sigmaE pathway of extracytoplasmic stress responses. Also included in this group are such homologs as Bacillus subtilis YluC, Mycobacterium tuberculosis Rv2869c S2P, and Bordetella bronchiseptica HurP. Rv2869c S2P appears to have a role in the regulation of prokaryotic lipid biosynthesis and membrane composition and YluC of Bacillus has a role in transducing membrane stress. This group includes bacterial and eukaryotic S2P/M50s homologs with either one or two PDZ domains present. PDZ domains are believed to have a regulatory role. The RseP PDZ domain is required for the inhibitory reaction that prevents cleavage of its substrate, RseA.	3.47452e-39
NZ_CP047173.1\|WP_159985367.1\|2760125_2760602_-\|OsmC-family-peroxiredoxin	gnl\|CDD\|224678	COG1764, osmC, Organic hydroperoxide reductase [Secondary metabolites biosynthesis, transport and catabolism].	1.08225e-15
NZ_CP047173.1\|WP_159985354.1\|2741877_2742477_-\|hypothetical-protein	gnl\|CDD\|180660	PRK06696, PRK06696, uridine kinase; Validated.	2.22342e-28
NZ_CP047173.1\|WP_159985362.1\|2752288_2753446_-\|flavodoxin-dependent-(E)-4-hydroxy-3-methylbut-2-enyl-diphosphate-synthase	gnl\|CDD\|234737	PRK00366, ispG, flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase.	0
NZ_CP047173.1\|WP_159986805.1\|2742528_2743407_+\|A/G-specific-adenine-glycosylase	gnl\|CDD\|224115	COG1194, MutY, A/G-specific DNA glycosylase [DNA replication, recombination, and repair].	1.05884e-89
NZ_CP047173.1\|WP_159985347.1\|2737901_2738846_-\|bifunctional-riboflavin-kinase/FAD-synthetase	gnl\|CDD\|235536	PRK05627, PRK05627, bifunctional riboflavin kinase/FAD synthetase.	4.86607e-126
NZ_CP047173.1\|WP_159985356.1\|2743453_2744875_+\|RNB-domain-containing-ribonuclease	gnl\|CDD\|223631	COG0557, VacB, Exoribonuclease R [Transcription].	9.80033e-67
NZ_CP047173.1\|WP_159985364.1\|2756747_2757713_-\|peptidylprolyl-isomerase	gnl\|CDD\|365980	pfam00254, FKBP_C, FKBP-type peptidyl-prolyl cis-trans isomerase.	8.46295e-22
NZ_CP047173.1\|WP_159985345.1\|2736240_2737788_-\|DUF2867-domain-containing-protein	gnl\|CDD\|187556	cd05245, SDR_a2, atypical (a) SDRs, subgroup 2. This subgroup contains atypical SDRs, one member is identified as Escherichia coli protein ybjT, function unknown. Atypical SDRs are distinct from classical SDRs. Members of this subgroup have a glycine-rich NAD(P)-binding motif consensus that generally matches the extended SDRs, TGXXGXXG, but lacks the characteristic active site residues of the SDRs. This subgroup has basic residues (HXXXR) in place of the active site motif YXXXK, these may have a catalytic role. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif.	2.67797e-124
NZ_CP047173.1\|WP_159985360.1\|2749272_2750274_-\|transcription-termination/antitermination-protein-NusA	gnl\|CDD\|237061	PRK12327, nusA, transcription elongation factor NusA; Provisional.	1.39393e-171
NZ_CP047173.1\|WP_159985351.1\|2739785_2740727_-\|tRNA-pseudouridine(55)-synthase-TruB	gnl\|CDD\|235113	PRK03287, truB, tRNA pseudouridine synthase B; Provisional.	1.78787e-130
NZ_CP047173.1\|WP_159985366.1\|2759354_2760110_+\|1-acyl-sn-glycerol-3-phosphate-acyltransferase	gnl\|CDD\|153251	cd07989, LPLAT_AGPAT-like, Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: AGPAT-like. Lysophospholipid acyltransferase (LPLAT) superfamily member: acyltransferases of de novo and remodeling pathways of glycerophospholipid biosynthesis which catalyze the incorporation of an acyl group from either acylCoAs or acyl-acyl carrier proteins (acylACPs) into acceptors such as glycerol 3-phosphate, dihydroxyacetone phosphate or lyso-phosphatidic acid. Included in this subgroup are such LPLATs as 1-acyl-sn-glycerol-3-phosphate acyltransferase (AGPAT, PlsC), Tafazzin (product of Barth syndrome gene), and similar proteins.	7.3767e-49
NZ_CP047173.1\|WP_159985358.1\|2744871_2745327_-\|30S-ribosome-binding-factor-RbfA	gnl\|CDD\|234787	PRK00521, rbfA, 30S ribosome-binding factor RbfA.	5.80728e-46
NZ_CP047173.1\|WP_159985361.1\|2750433_2752197_-\|proline--tRNA-ligase	gnl\|CDD\|236405	PRK09194, PRK09194, prolyl-tRNA synthetase; Provisional.	0
NZ_CP047173.1\|WP_159985359.1\|2748889_2749222_-\|DUF448-domain-containing-protein	gnl\|CDD\|377288	pfam04296, DUF448, Protein of unknown function (DUF448).	4.78143e-20
NZ_CP047173.1\|WP_159985365.1\|2757883_2759218_+\|aminotransferase-class-III-fold-pyridoxal-phosphate-dependent-enzyme	gnl\|CDD\|235685	PRK06058, PRK06058, 4-aminobutyrate--2-oxoglutarate transaminase.	0

>NZ_CP047173.1|WP_159985358.1|2744871_2745327_-|30S-ribosome-binding-factor-RbfA
MADPARARKLAERIQVIVAKRLERGLRDPRLGFVTITDVQVTGDLQHASVFYTVYGTDEERADSALALKAATGLLRTEVGKNITARLTPSLEFILDAIPENAKHIEDLLATARNQDTQVQSLAAKAEYAGDADPYVKPREDEDDDEADDRA
>NZ_CP047173.1|WP_159985356.1|2743453_2744875_+|RNB-domain-containing-ribonuclease
MTSRRLRSSLPDAELAAALAAVRTANDLPGPFPPAVLAEAESAGEHADDTGRADLTEVPFVTIDPPGSLDLDQALQLERTPSGVVLRYAIADVPAVVRPGGALDAETRRRGQTYYLPDGRIPLHPPVLSEDTASLLPGQTRRALVWTLELDDAAEPRAVRLERALVRSTARLDYEGVQRAAERGDPHPSIALLPWFGAERLARESERGGASLSLPDEEIVAVDGGYRIDRRAPLPAEGWNAQVSLLTGMAAATMMLDARVGVLRTLPAADAATTAAFRARTEALGVPWGPDERYGDYLRRLDTADPAQLAIMSAAATLFRGAGYTAFDGAVPEQPEQAALAAPYAHVTAPLRRLVDRFGLAVCLAVSSGREIDPRLRAALPEVPPLMTANDRRDGAASRAATDIVEAAILRGREGASFEGVVLTSSRTRSQVQLLEPTITVGVPGPLTPGARVVVVLESVDVATGSAVFRPAG
>NZ_CP047173.1|WP_159986805.1|2742528_2743407_+|A/G-specific-adenine-glycosylase
MRTAVAAAIVDWYRGNARDLPWRREGFPAWGTLVSEFMLQQTPVVRVIPRLAEWLERWPTPAALAAVPPGEAVRAWQSLGYPRRALRLHACAVAITEQHGGVVPHDVETLLALPGIGDYTARAIAVFSFGHRHPVVDTNVRRVIARAIDGAAEPGPPRAKTDLAAMDALLPDDLADAAAFNAGAMELGAIVCTARAPRCDACPIREACAWRAAGYPAYDGPVKARQKKYEGSDRQVRGLVLAELRAAHGPVTAAEIASLWPDAEQRDRALAGLLADGLATGTADDGYLLPAS
>NZ_CP047173.1|WP_159985354.1|2741877_2742477_-|hypothetical-protein
MTKWAPQKADVLDALAAEVLHNYGHGRVAVGIDGDDPDVSGPFALELAEAVRRTGRDAVVAHLADFRRPRAEREDPSIPEAQRAYLAGYDYELLRRVLLDPFKLGGSTGFVLAGYDGVRDEARQARWRTAGRDALLLVDGPFALRPELRGAWSTSIRLDTQEPPVDELYRASTDPRRLAGILVDIRDPEYPRRLFADSC
>NZ_CP047173.1|WP_159985353.1|2740817_2741816_+|2-dehydropantoate-2-reductase
MRIAVLGAGAVGGTVAALLDRAGHDVEVTARGDNLTAIRRQGLRLDGAWGEHTAWVRCGETLDLVPDLAVLCTKAQDAEDALRANRRTVDGTLLVVVQNGLDGLQAAARQVRDARLVGALALFAASHLEPGRVTVTAPATTTLGVPGRPADDDVRRAAAILGEAVPTATTDDFLGAQWTKLLINEVNALPAITGLSVQETIAHPGLRRLLARAMREAARIGIASGVRFGALQGLSDARIRTLAAAPLPVLELLPRRMAGRMGDVPNPGSTLQSVKRGVPSEIDHLAGAVVRTAHRLGRDAPVNQLLVELVHEVERAGAFLPPDEVVRRASSI
>NZ_CP047173.1|WP_159985351.1|2739785_2740727_-|tRNA-pseudouridine(55)-synthase-TruB
MLETPSPSAAAPNGILLLDKPGGITSHDLVSRTRRRAGTRKVGHAGTLDPMATGLMILGLGPSTRLLTYLVGLDKEYEATIRLGAATGTDDREGETLSTAEPGAVAALTADAIDAVVATLTGAIEQVPSAVSAIKVDGRRAYARVRDGEEVVLPARPVVVSGFEVLERHEVDGFLDLDVRVACSSGTYIRALARDLGAALGVGGHLTVLRRTAVGPFRVAAAGDIDELDVPAALLAPTAVAGELFPLLHLDAREAVDLANGKRIPVPEAFAGAKGLLAAVGPGERLVGLAERRGAALKSVVNFPTEELRVAAP
>NZ_CP047173.1|WP_159985349.1|2739420_2739789_-|hypothetical-protein
MIDWFTTLQVGIAVAAGLLCLVLGLLGRRPSDVSVGATAIVELLLIVQLAVAIVSPLVGNRPTGSLPEFYIYLVSALILPLAAGFWALIERSRWSTVVLGVVCLAIAVMVYRMHQIWYVQVV
>NZ_CP047173.1|WP_159986804.1|2738845_2739310_-|hypothetical-protein
MPNPEQRPARSARSRGIGSLLVVVYGILALAATGRSVFQIIDRFDEAPLAFSLSALSAVVYIVATVALVAPGRVWQRIAFVTITFELVGVLVVGAISVLAPQLLGLSSADPFGRQSTVWAAFGAGYLLIPLVLPVLGLWWLRVQGRRPAAGTAA
>NZ_CP047173.1|WP_159985347.1|2737901_2738846_-|bifunctional-riboflavin-kinase/FAD-synthetase
MRVEQRPADLTGIGPSAVTIGKFDGVHTGHRAVIDTLHTRARERGLAAVVVTFDRNPLSVIAPEKCPPALVGNEQKLELLAETGVDATLLLAFDEQFRSLTAEEFVRQVLVDALAARVVLVGSDFRFGAHGAGDVARLRELGARHGFEVELIDDVRPEHGRRVSSTWIRELLAEGDVEHATWLLGHEPVVRGVVVHGAKRGRELGFPTANLSPESQGLIPADGVYAGRFVTEGRTYPAAISVGSNPTFVGVPPKQVEAYLLDETIDLYDRVVDVAFVSRIRGQVAYEGVEPLIRQMNDDVEKVRGILGAERPAG
>NZ_CP047173.1|WP_159985345.1|2736240_2737788_-|DUF2867-domain-containing-protein
MSESSPAATRPLALVTGATGYIGGRLTPRLLEAGYRVRVLVRDPRKLAEVPWADDVEVAQGDLSDPESLAAAFEGVGVLYYLVHSMGSGADHARFEEVESRAATNVAEAALAAGVDRIVYLGGLHPDVEKLSPHLRSRAEVGRILMASGVPTIALQAGVIIGSGSTSFEMVRHLTDVLPYMPAPQWVRNFIQPIAVRDVMHYLLGSAALEDATLNRTFDIGGPDVLRYGQMMNGYAVEAGLAQRPIASLPVFTPWLASQWVNLVTPIPRSLAVPIIASLQYDCVVREQDIRELIPDPEGGLTPYRRSVRLALGKMQAGEIETSWQNAEVVGAPSDPLPSDPEWAGHTVYVDLKVRRTDADPAKLWRVIEGIGGTNGWYSFPLAWAIRGWMDKLVGGVGLQRGRRDSERLHAGDALDFWRVEAIERPTLLRLRAEMKVPGGAWLEMRAEPGEDGGSVYTQRAVFFPQGLGGRLYWFAVLPFHGVIFNGMANRITATATDLADAGAERSTGGRGAQR
>NZ_CP047173.1|WP_159985359.1|2748889_2749222_-|DUF448-domain-containing-protein
MEPVRTCVGCRLRAPRASLLRLVLPSNSLVVDPRGVRAGRGAWLHDAYDCYALAEKRRAFSRAFRTRESVDASAVRQYVTRDLTGAAPHPEEPARRTITPQREQAERPVN
>NZ_CP047173.1|WP_159985360.1|2749272_2750274_-|transcription-termination/antitermination-protein-NusA
MDIDLSVLRLLEREREIPFEELVQIIEQAILTAYLKHIGQADDADKATAVDARVHLDRKTGHVSVFVPEIDDEGAVVGESEDSPRDFGRIAAFAAKQVINQRLRDIGDEKILGEFKGREGDIVAGVIQQGPNPKMIHVDLGSIEAILSPEEQVPGEDYSHGRRIRVYVTSVSRGTKGPSVQVSRTHPSLVRKLFALEVPEIASGVVEIVSLAREAGHRTKIAVRATEPGVNAKGACIGELGQRVRAVTAELNNEKIDIVDYSSDLPTFVASALSPAKVTSAFVIDQSLKAVRALVPDYQLSLAIGKEGQNARLAAKLTGAKIDIQPDSVMDGE
>NZ_CP047173.1|WP_159985361.1|2750433_2752197_-|proline--tRNA-ligase
MVTRLSHLFVRTLREDPADAEVASHRLLVRAGYIRRQAPGVFAWLPLGLRVKRRIEAIIHAEMEAAGAQEVHFPALLPREPYELSGRWTEYGDGVFRLKDRKDADYMLAPTHEEFFTLLVKDLYSSYKDLPLSIYQIQDKYRDEARPRAGLLRGREFTMKDAYSFDYTDAGLDASYQLQRDAYERIFRRFGLEYVIVQADAGAMGGSRSEEFLHPTPVGEDTFVRSAGGYAANVEAYRTPVPDALPLEGLAEARVFDSPGTPTIQTLVDLANAQEPRADGRAWTAGDTLKNVVLALTALDGTRELVVVGLPGDRDVDLKRAEVAFAPAEVEAATEEDFAKHPALVKGYIGPWSAEGAVLGEESASGIRFLLDPRVVEGTAWITGANIAGKHVLDLVAGRDFAGDGVVEVADVRTGDPAPDGSGPIETARGMEIGHVFQLGRKYADVLGLKVLDENGKLVTVTMGSYGIGVTRILAIIAESNHDDRGLIWPENVAPFDVHLIATGKDPAALALAESVGASLEAAGRDVLIDDRPKVSPGVKFGDAELMGVPLIVIAGRSAAEGIVELWDRRTGEREQLPAAEALARLA
>NZ_CP047173.1|WP_159985362.1|2752288_2753446_-|flavodoxin-dependent-(E)-4-hydroxy-3-methylbut-2-enyl-diphosphate-synthase
MPAVNLGLPKVPVTLAPRRKTRQIKVGKVLVGGDAPVSVQSMCTTPTTNINATLQQIAELTASGCDIVRVAVPSRDDAEALPIIAKKSQIPVIADIHFQPNYVYAAIDAGCAAVRVNPGNIRKFDDQVGKIAAAAKAAGVSIRIGVNAGSLEPTLLQKYGKATPEALVESAVWEASLFEEHDFHDFKISVKHNDPVIMVQAYRLLAERGDWPLHLGVTEAGPEFQGTIKSATAFGILLGEGIGDTIRVSLSAPPAQEVKVGLQILQSLNLRERKLEIVSCPSCGRAQVDVYTLANDVTAGLEGMSVPLRVAVMGCVVNGPGEAREADLGVASGNGKGQIFVKGEVIKTVPESEIVKTLIEEANRLAAEMPADDTSTGSPVVVVSK
>NZ_CP047173.1|WP_167306109.1|2754139_2755528_-|site-2-protease-family-protein
MESVLLFVLGVVIIAVGVALSIALHEVGHLVPAKLFGVKVTQYMIGFGRTIFSVRRGETEYGVKALPLGGYIAMIGMYPPKHPGDRVGESSTGFFNGLNGNESTPEPEPRRGGYATMIDEARAASAETIGAGEDHRAFYRLAVWKRVIVMFGGPFMNLVIATVLFAVLLCGIGVAQNTSTISTVSQCVVPASDTTTESCSADDPLAPGAAAGILPGDTITAIDGTPVSSWNDLTPIIRASAGVPLSVAVDRDGQPLTLTITPAENEVAVTDAAGNAVLDSSGAVETQTVGFIGISPTQALVQQPITAVPETVGQNVASVAHVILNLPQRLIDVAQAAFGTEARDANGPISVVGVGRIAGEIAASDQLPIVSKVQTMVGVLASLNVALFVFNLVPLLPMDGGHIAGALWEGLRRRIAKLFGRRDPGPVDIAKLLPLTYAVVLLLGGMSALLIYADIVKPIQLF
>NZ_CP047173.1|WP_159985363.1|2755611_2756694_-|1-deoxy-D-xylulose-5-phosphate-reductoisomerase
MRRVIILGSTGSIGTQALDVIGANRDRFEVVGLGAGSNREVVARQARDFGVEHTAFGAAEAEQLIRSVDADVVLNGITGSVGLGPTLAALEEGRTLALANKESLIVGGELVTSVAAPGQIVPVDSEHSALAQALLAGEHREVRRLVLTASGGPFRGRGRDSLRDVTPAEALAHPTWDMGLVVTTNSSTLVNKGLEVIEAHLLFDVPYDRIDVTVHPQSIVHSMVEFVDGSTIAQASPPDMRLPISLGLDWPHRVAGVGVPLDWTRAQSWTFEPLDEEAFPSVRLAKKVGVAGASYPAVFNAANEQAVQAFHAGRIGYLDILATVEAVVDAHTVEGALTRDSLAEAESWARRTADARIASA
>NZ_CP047173.1|WP_159985364.1|2756747_2757713_-|peptidylprolyl-isomerase
MRRTLAILAVLGASLGLAACTPGTPEATPSATPTPLSCISSGDASDAVDAAGDFGTKPVTVFPTPISVDATEGTTVIEGTGDTVAEGDTVLVDYTLYNGTSGAEFSASSYASGGRAAFEVDTEQYLAGLVKAVNCATVGSRVIAVVPPSDAFGDAGSTDLGIAADDSIVMVIDVEGIVPSAATGEPQAPVDGLPTVALAEDGAPTVTIPATDPPAELQLEVLKKGDGQTVADGDSLIVQYQGVVWGTGEVFDQSWGKGTPASFGTGDVIEGFKEAVVGQTVGSQVLVVIPPDKGYGEAGNTNAGISGTDTLVFVVDILAVS
>NZ_CP047173.1|WP_159985365.1|2757883_2759218_+|aminotransferase-class-III-fold-pyridoxal-phosphate-dependent-enzyme
MREFSVPQSRALVTELPGPRSIALQERRVASVSRGAGTLANIYMDHASGAVLVDVDGNRLIDLGCGIGVTTIGHAHPAVAAAAAAQAEKLTHTLFTVTPYENYVRVAEKLAEITPGDFEKHSILVNSGAEAVENAVKIARKHTGRRAIASLDHAFHGRTNLTMAMTYRPWPERAGMGPFPGEIYSLPMSYPFRDPEGMTGEEAAERSIDYIRTHIGAEELAALFVEPIQGDGGIIIPAAGYFERLSEFCTENGIVFVADEIQAGIARTGAWYSIEHFGVVPDLITSAKGIAGGFPLAAVTGRAEIMDAVQPGGIGGTFGGNPVSTAAALATFEAIESEGLIAEAQRVERALWSRIGDWAERFPVVGEVRGKGAMFGVELVHPGTKKQNPEALSAVLKHVTTNGVIALDAGSWDSVLRIMPSVVISEELIDDAAGVIEEALATFG
>NZ_CP047173.1|WP_159985366.1|2759354_2760110_+|1-acyl-sn-glycerol-3-phosphate-acyltransferase
MPTDDAPAPPTPPGIGASARVARFTMSRLGRMIYRPIVEGRDNVPRTGRVILASNHLSFIDSPVLTLLAPRPVQFLAKADYFTGTGARGAASRSFFTAVGAVPVERGAGQAAQEALDLGRAILERDEAFAVYPEGTRSRDGRLYRGRTGVAWLALTTGAPVVPVGLVGTQELQPVGSKIPRLHRITVRFGDPLDLSRHGSADSGRARRHATDEVMAAIHGLSGQEAAGVYNESPAVTTVERIKRALPHERR
>NZ_CP047173.1|WP_159985367.1|2760125_2760602_-|OsmC-family-peroxiredoxin
MKAEHDYALSVVWEGNRGSGTSGYREYGRQNVVVAEGVPPILGSADRPFRGDPDRWNPEQLLLASLAQCHLLSFLHVAVKNGIVVTEYVDDAVGRMVHEGEGGRFVSVTLRPRVRVAHESMVEPAQSLHGEASRLCFIANSVSFPVGHEPQTSAADVR

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Crispr_ID: NZ_CP047173_9

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP047173_9

2820012-2820095

Orphan

Consensus_repeat	Method
CCGTGCTGGTCGAGGAGGCGCCG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP047173_9

>merge|NZ_CP047173|9|2820012-2820095|CRISPRCasFinder
CCGTGCTGGTCGAGGAGGCGCCGTGTCGAGACCGACGTGCTCAACGGAGCGGGTCTCGATGCCTTGCTGGTCGAGGAGGCGCCG

>NZ_CP047173|9|9|2820012-2820095|CRISPRCasFinder
CCGTGCTGGTCGAGGAGGCGCCG	TGTCGAGACCGACGTGCTCAACGGAGCGGGTCTCGATG
CCTTGCTGGTCGAGGAGGCGCCG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP047173.1\|WP_159985420.1\|2830407_2830932_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP047173.1\|WP_159985421.1\|2830976_2831771_-\|transglutaminase	unknown	unknown	gnl\|CDD\|376628
NZ_CP047173.1\|WP_159985415.1\|2823878_2824955_-\|threonine-synthase	unknown	unknown	gnl\|CDD\|236013
NZ_CP047173.1\|WP_159985422.1\|2832430_2833222_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|379207
NZ_CP047173.1\|WP_159985414.1\|2822913_2823882_-\|homoserine-kinase	unknown	unknown	gnl\|CDD\|234920
NZ_CP047173.1\|WP_159985407.1\|2812127_2813741_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|240528
NZ_CP047173.1\|WP_159985406.1\|2811003_2812104_-\|glycosyltransferase	unknown	unknown	gnl\|CDD\|340831
NZ_CP047173.1\|WP_159986810.1\|2818014_2818881_-\|peptide-chain-release-factor-N(5)-glutamine-methyltransferase	unknown	unknown	gnl\|CDD\|236467
NZ_CP047173.1\|WP_159985405.1\|2809939_2810992_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|377253
NZ_CP047173.1\|WP_159985413.1\|2820175_2822728_-\|transcription-termination-factor-Rho	unknown	unknown	gnl\|CDD\|237171
NZ_CP047173.1\|WP_159985412.1\|2818886_2819969_-\|peptide-chain-release-factor-1	unknown	unknown	gnl\|CDD\|234801
NZ_CP047173.1\|WP_159985416.1\|2824956_2826297_-\|homoserine-dehydrogenase	unknown	unknown	gnl\|CDD\|235783
NZ_CP047173.1\|WP_159985418.1\|2827912_2828689_-\|LmeA-family-phospholipid-binding-protein	unknown	unknown	gnl\|CDD\|378597
NZ_CP047173.1\|WP_159985410.1\|2816827_2817067_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|377508
NZ_CP047173.1\|WP_159985409.1\|2815424_2816378_-\|NAD-dependent-epimerase/dehydratase-family-protein	unknown	unknown	gnl\|CDD\|187566
NZ_CP047173.1\|WP_159985408.1\|2813737_2814811_-\|glycosyltransferase	unknown	unknown	gnl\|CDD\|340839
NZ_CP047173.1\|WP_159986809.1\|2814807_2815341_-\|serine-acetyltransferase	unknown	unknown	gnl\|CDD\|223975
NZ_CP047173.1\|WP_159985417.1\|2826293_2827724_-\|diaminopimelate-decarboxylase	unknown	unknown	gnl\|CDD\|143501
NZ_CP047173.1\|WP_159985411.1\|2817063_2818002_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|379721
NZ_CP047173.1\|WP_159985419.1\|2828685_2830344_-\|arginine--tRNA-ligase	unknown	unknown	gnl\|CDD\|234964

Protein	Function_ID	Function_description	E-value
NZ_CP047173.1\|WP_159985421.1\|2830976_2831771_-\|transglutaminase	gnl\|CDD\|376628	pfam01841, Transglut_core, Transglutaminase-like superfamily. This family includes animal transglutaminases and other bacterial proteins of unknown function. Sequence conservation in this superfamily primarily involves three motifs that centre around conserved cysteine, histidine, and aspartate residues that form the catalytic triad in the structurally characterized transglutaminase, the human blood clotting factor XIIIa'. On the basis of the experimentally demonstrated activity of the Methanobacterium phage pseudomurein endoisopeptidase, it is proposed that many, if not all, microbial homologs of the transglutaminases are proteases and that the eukaryotic transglutaminases have evolved from an ancestral protease.	1.07745e-16
NZ_CP047173.1\|WP_159985415.1\|2823878_2824955_-\|threonine-synthase	gnl\|CDD\|236013	PRK07409, PRK07409, threonine synthase; Validated.	0
NZ_CP047173.1\|WP_159985422.1\|2832430_2833222_-\|hypothetical-protein	gnl\|CDD\|379207	pfam13472, Lipase_GDSL_2, GDSL-like Lipase/Acylhydrolase family. This family of presumed lipases and related enzymes are similar to pfam00657.	1.31554e-16
NZ_CP047173.1\|WP_159985414.1\|2822913_2823882_-\|homoserine-kinase	gnl\|CDD\|234920	PRK01212, PRK01212, homoserine kinase; Provisional.	3.93401e-103
NZ_CP047173.1\|WP_159985407.1\|2812127_2813741_-\|hypothetical-protein	gnl\|CDD\|240528	cd13123, MATE_MurJ_like, MurJ/MviN, a subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins. Escherichia coli MurJ (MviN) has been identified as essential for murein biosynthesis. It has been suggested that MurJ functions as the peptidoglycan lipid II flippase which is involved in translocation of lipid-anchored peptidoglycan precursors across the cytoplasmic membrane, though results obtained in Bacillus subtilis seem to indicate that its MurJ homologs are not essential for growth. Some MviN family members (e.g. in Mycobacterium tuberculosis) possess an extended C-terminal region that contains an intracellular pseudo-kinase domain and an extracellular domain resembling carbohydrate-binding proteins. Proteins from the MATE family are involved in exporting metabolites across the cell membrane and are often responsible for multidrug resistance (MDR).	3.67736e-67
NZ_CP047173.1\|WP_159985406.1\|2811003_2812104_-\|glycosyltransferase	gnl\|CDD\|340831	cd03801, GT4_PimA-like, phosphatidyl-myo-inositol mannosyltransferase. This family is most closely related to the GT4 family of glycosyltransferases and named after PimA in Propionibacterium freudenreichii, which is involved in the biosynthesis of phosphatidyl-myo-inositol mannosides (PIM) which are early precursors in the biosynthesis of lipomannans (LM) and lipoarabinomannans (LAM), and catalyzes the addition of a mannosyl residue from GDP-D-mannose (GDP-Man) to the position 2 of the carrier lipid phosphatidyl-myo-inositol (PI) to generate a phosphatidyl-myo-inositol bearing an alpha-1,2-linked mannose residue (PIM1). Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility. The members of this family are found mainly in certain bacteria and archaea.	2.53783e-32
NZ_CP047173.1\|WP_159986810.1\|2818014_2818881_-\|peptide-chain-release-factor-N(5)-glutamine-methyltransferase	gnl\|CDD\|236467	PRK09328, PRK09328, N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional.	4.55795e-97
NZ_CP047173.1\|WP_159985405.1\|2809939_2810992_-\|hypothetical-protein	gnl\|CDD\|377253	pfam04230, PS_pyruv_trans, Polysaccharide pyruvyl transferase. Pyruvyl-transferases involved in peptidoglycan-associated polymer biosynthesis. CsaB in Bacillus anthracis is necessary for the non-covalent anchoring of proteins containing an SLH (S-layer homology) domain to peptidoglycan-associated pyruvylated polysaccharides. WcaK and AmsJ are involved in the biosynthesis of colanic acid in Escherichia coli and of amylovoran in Erwinia amylovora.	2.0362e-10
NZ_CP047173.1\|WP_159985413.1\|2820175_2822728_-\|transcription-termination-factor-Rho	gnl\|CDD\|237171	PRK12678, PRK12678, transcription termination factor Rho; Provisional.	0
NZ_CP047173.1\|WP_159985412.1\|2818886_2819969_-\|peptide-chain-release-factor-1	gnl\|CDD\|234801	PRK00591, prfA, peptide chain release factor 1; Validated.	0
NZ_CP047173.1\|WP_159985416.1\|2824956_2826297_-\|homoserine-dehydrogenase	gnl\|CDD\|235783	PRK06349, PRK06349, homoserine dehydrogenase; Provisional.	0
NZ_CP047173.1\|WP_159985418.1\|2827912_2828689_-\|LmeA-family-phospholipid-binding-protein	gnl\|CDD\|378597	pfam11209, DUF2993, Protein of unknown function (DUF2993). This family of proteins with unknown function appears to be restricted to Cyanobacteria.	4.28789e-12
NZ_CP047173.1\|WP_159985410.1\|2816827_2817067_+\|hypothetical-protein	gnl\|CDD\|377508	pfam05402, PqqD, Coenzyme PQQ synthesis protein D (PqqD). This family contains several bacterial coenzyme PQQ synthesis protein D (PqqD) sequences. This protein is required for coenzyme pyrrolo-quinoline-quinone (PQQ) biosynthesis.	0.000570006
NZ_CP047173.1\|WP_159985409.1\|2815424_2816378_-\|NAD-dependent-epimerase/dehydratase-family-protein	gnl\|CDD\|187566	cd05256, UDP_AE_SDR_e, UDP-N-acetylglucosamine 4-epimerase, extended (e) SDRs. This subgroup contains UDP-N-acetylglucosamine 4-epimerase of Pseudomonas aeruginosa, WbpP, an extended SDR, that catalyzes the NAD+ dependent conversion of UDP-GlcNAc and UDPGalNA to UDP-Glc and UDP-Gal. This subgroup has the characteristic active site tetrad and NAD-binding motif of the extended SDRs. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif.	1.92673e-106
NZ_CP047173.1\|WP_159985408.1\|2813737_2814811_-\|glycosyltransferase	gnl\|CDD\|340839	cd03811, GT4_GT28_WabH-like, family 4 and family 28 glycosyltransferases similar to Klebsiella WabH. This family is most closely related to the GT1 family of glycosyltransferases. WabH in Klebsiella pneumoniae has been shown to transfer a GlcNAc residue from UDP-GlcNAc onto the acceptor GalUA residue in the cellular outer core.	5.1353e-36
NZ_CP047173.1\|WP_159986809.1\|2814807_2815341_-\|serine-acetyltransferase	gnl\|CDD\|223975	COG1045, CysE, Serine acetyltransferase [Amino acid transport and metabolism].	1.30464e-33
NZ_CP047173.1\|WP_159985417.1\|2826293_2827724_-\|diaminopimelate-decarboxylase	gnl\|CDD\|143501	cd06828, PLPDE_III_DapDC, Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Diaminopimelate Decarboxylase. Diaminopimelate decarboxylase (DapDC, EC 4.1.1.20) participates in the last step of lysine biosynthesis. It converts meso-2,6-diaminoheptanedioate to L-lysine. It is a fold type III PLP-dependent enzyme that contains an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain, similar to bacterial alanine racemases. DapDC exists as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Homodimer formation and the presence of the PLP cofactor are required for catalytic activity.	5.21861e-148
NZ_CP047173.1\|WP_159985411.1\|2817063_2818002_+\|hypothetical-protein	gnl\|CDD\|379721	pfam14907, NTP_transf_5, Uncharacterized nucleotidyltransferase. This family is likely to be an uncharacterized group of nucleotidyltransferases.	2.35828e-09
NZ_CP047173.1\|WP_159985419.1\|2828685_2830344_-\|arginine--tRNA-ligase	gnl\|CDD\|234964	PRK01611, argS, arginyl-tRNA synthetase; Reviewed.	0

>NZ_CP047173.1|WP_159985412.1|2818886_2819969_-|peptide-chain-release-factor-1
MFESVSVLFAEHEDLQTQLSDPALHADAARAKKVNRRYAELSQIKAAHSAWIQAGEDLEAARELAREDDAFAEEVPELEEGLRVAQEKLRRLLIPRDPDDGRDVIMEIKGGEGGAESALFAADLLRMYLHYAEAKGWKTEILDRDESDLGGYKNVQVAIKSNATDPSQGVWAHLKYEGGVHRVQRVPVTESQGRIHTSTTGVLVFPEVDAPEEVAINQNDLKIDVYRSSGPGGQSVNTTDSAVRITHLPTGIVVSMQNEKSQLQNREAGMRVLRARILARQQEEIAAAASDARKTQIRTMDRSERIRTYNFPENRIADHRTGYKAYNLDGVMNGALDPVVESAIQFDEEARLADIGSDES
>NZ_CP047173.1|WP_159986810.1|2818014_2818881_-|peptide-chain-release-factor-N(5)-glutamine-methyltransferase
MTIELDARALLADAVARLSAARVPTPDVDAELLLGHLLGLGRGSLQARLITGLTLDGATRDAFDHAIERRASREPLQHITGVAPFRSLELAVGPGVFVPRPETEGVAQLAIDALRAVADESPLAVDLGTGSGALALALAHEVPHARVIGVENSVDAFLWARGNRDRLGLENARIVFADLADALPDLDGTVSVVVSNPPYIPSAAIPRDIEVQRYDPPAALYGGEDGLDVVRALSRTALRLLRPGGVLVIEHGELQGAEIRALLTADGWRGATTQRDLTGRDRSTVAVR
>NZ_CP047173.1|WP_159985411.1|2817063_2818002_+|hypothetical-protein
MTGAAGLDLRTAVLLLHGWLSWFAEQHAHRALFLKGPGLRFHGLRGEHVSADVDVLVDPADFESFCALLEAGGWSQRRSTFAGTRYTEHSRTLIHPSWPCDIDVHRFFPGFLAPGEVVFDELWRRRVPMPAAGRDCSIPDRAGSLLVLALHALRSRSDNARHARELAHLIEHAALDAEQRADLVALARRTGAEHTLAEVLRALDAVPATPAPPVEDPAEAAALAEWTRRVSAGASTGYMWTSIIRRQRGWRRLLTIRHALWPRRADLLRMRPATTDTAAGRTRARLQRLVRGAPAASRAVAQLITDRRRSRR
>NZ_CP047173.1|WP_159985410.1|2816827_2817067_+|hypothetical-protein
MPLREPLVEAVEISGSGVDIWDSICASSHGITLPALIEKIAALYSTDVSEIAGPVEEFVLLLRDRGLVLAADQSPGGAG
>NZ_CP047173.1|WP_159985409.1|2815424_2816378_-|NAD-dependent-epimerase/dehydratase-family-protein
MKALVTGAAGFIGSTISRRLLADGWDVVGIDAFTDYYDVSLKRANAAKNIAAGLELVEADLTTVELAPLLDGVDVVFHQAGQPGVRGSWKEGFAPYLSRNIGATQRLLEALRDHDRLQRFVYASSSSIYGDAESFPTSEATPPSPVSPYGVTKLAAEHLTSLYGTNFGLPTTSLRYFTVYGPRQRPDMAFTRFVRSAVLGDPIEIYGTGEQVRDFTFVDDIVEANVLAATTATAPGSVYNVAGGTSASVNEVLHFLGRLHGSPLNVSYTDKALGDVVRTGGGTDRIAAELGWAPKVQLEDGLARHLDWACETFGGRA
>NZ_CP047173.1|WP_159986809.1|2814807_2815341_-|serine-acetyltransferase
MAHGVSAWRFDSRWRHPVVHYQRLLRRVEFLRAQKGAAARAARFVARFRLQRAGLRTGISIGPGVFGPGLSIAHYGTLVVNARARVGAFCRIHPTVTIGIAQGGVPTIGDFVYIGPGAVIYGAVTIGDGAVIGANAVVNRDVAAGVTVAGAPARVVASRDSASMMPAAFARVESAKR
>NZ_CP047173.1|WP_159985408.1|2813737_2814811_-|glycosyltransferase
MKVVLLVPRFSGGGAEFVARQWALHLAASGDTVVVAATKLTGDDEIPAELRLADLDGRGTVRKLLQLRRLLRAEKPDAVLALMPYWNLLALFATRLLPGRPRVLISGRNMAVHLRRTFGLAYAAKQLLARVAYRWADEFVAISHPVAAEAIALYGLPPARVSVVLNPSLKTESAAAALPRHDDGPLALVAPARLVAQKRPQLVVETAVACRELHGREVVAHFYGVGPLTEQVRALAAQRGVPAVFHGWVSSWSSDLPANAVVLLPSLSEGFGNVLVEAARVGVPSVASSQALGVADAIVPRLTGVLVAGESAADFAAGVVEAAGMTVAGHDAWLGSFTRAASGAALRSRLEAVVMQK
>NZ_CP047173.1|WP_159985407.1|2812127_2813741_-|hypothetical-protein
MSERGAGRTVLSASTGTLVARVLGFLRNIALAAALGTGLVSDSYNLANQVPNQIFLLLGGGVIAAVFLPQLAKLHLRSERDADRYGTILLLCSAAFGLVVTGLLLAFSGPLIAVLGGGSWGFSQRELTLAFFLWCTPQVAAASVFTVASQLMNARGRFTSVSWLPAVSSVGVIAGAVVVLSAGDVQADAPGSVSLVAITVLGAATLGGTVLQTVVLCALLIRAGFRPRWSGGLRGLGLRLAARTGLLAVASAVCYQISNLLTAAWASQAGATAADAGVVGFGYSALFYAQAIVSVVQGVAVSSLASVLLQRLSRHFAASNDEEAFRELSEALLRLASFILPVAGLLVALGPGLSELMFARGETSTDSARIIGLVLAVFASSLLPFAWHVLLIRPFYAKHDGIRPLYSAFVINTIWAGTGLVGLLVLPPQGVILGLATGFALSYWIDLPIKLRWLHRRIGFRIESQVRRGVVRGAITTAVLSIVIGTPGWLLLFLLDPPTLAVLGIVAVQTLVFVAAYALATRRSSISPVDLVRWLKK
>NZ_CP047173.1|WP_159985406.1|2811003_2812104_-|glycosyltransferase
MSTRLIVEQFDPVRPKPGGIDTCIRGLVKFAPETEVIRIAGVDAIGDKVLGEWQEYEIGGRRFAFMPVVRLDHADLTRRIPHSVRLARGLKKFLPVADFDTVQTHRVNVGAVALRHFRGTPHVQFMHSSGDANLKQGSVSFFRRARGLYRFLERRVVRQSRAVVIFSSGGAERLRRQSSSVHFSPTWFDPTEFYPSASESSEKVNVLWACRIEPAKNPELAIAAFALLPERYRLTVAGSGTLEGRMREAAAAAGIAHRVDFRGAVPKGEVGALMREHDLLLMSSRFEGFSRSIVEALATGLPVATTPGGDPNALIVEGVNGARASRDDPAELAAAVERASAASASVARASVEELNAPLIVDTILSK
>NZ_CP047173.1|WP_159985405.1|2809939_2810992_-|hypothetical-protein
MKIFVPVIGQYENIGDIVLRRELVEWLSGMGEMHAYVGASPASYDEALDLPADVVTYRSVGGWARELVTSLRRGECVAYIYKPGEIQLTWRGLKEHIGLLPLVVATRLRGGLVIRVGAGSRNFDRWPTAVFRSTLGLSHYTMWRDVRTADRLGHGGVMPDLGFGQTGTEHADPIERTRLTVTMRGDRVPPSRQWRQAIARVAEERGLRLTVVTQVERDEPLMAELAREWGADYVAWGSRSHKVQEEEVRRAFAESALVVSDRLHALIVAVAEGADVASVADSPTDKIERHFAAAGIPIVVFDAKHRSADEIADALRSVPADTSQQSALQGAVEQLAVVRTAVRTLLEARA
>NZ_CP047173.1|WP_159985413.1|2820175_2822728_-|transcription-termination-factor-Rho
MCSPGERSFPGGRNPSPVTDVNTHSPAADTNADLSALRVAELQALATSLGLGGASKLRKGELVQAITDLRAGAAAEPAEPAEAPEALVAEEPAAAEEPAAAEPVVAEQAFAEQPEAVVDGTSVEAEPADVAEQSAPVLEAPAETPAAAESTEADTADVLEQAAATTEEPAPVVADAAPVELDLPVAAEPVAEPAERTPRRRGSRRASSGTVAAGEHVNVPAGSGVESLIPELPPILEQAPEAEQAPRPVIEIELPNGPESDDSSREGGQRERRGRRRSRGGSAEQSEQPESADAAETVSDDSGDEQDGGDRRDAQQGSDQQGSDEQQNSGDQQGTGRGRNRRNRNRRGEDRQQNDGGQQNGGQNGGGQNGNGGQQNGQQNGGQNNGGQGNGGQNGAAQNGNGQSAPSQGGNQGQGGNAGGQGAQGSAQNGQQADEDGRRSRYRDRKRRGGAVGDDFEPEISEDDVLIPVAGILDVLDNYAFVRTTGYLPGVSDVYVSLGQVKKYNLRKGDAVVGAIRQPREGEGSGRQKYNAIVRVDSINGQTVEEAAARVEFQKLTPLYPTERLRLETEPGKLTQRIIDLVAPIGKGQRGLIVAPPKAGKTIVLQQIANAIVQNNPEVHLMVVLVDERPEEVTDMQRTVRGEVVASTFDRPAEDHTTVAELAIERAKRLVELGHDVVVLLDSITRLGRAYNVTAPPSGRVLSGGVDASALYPPKKFFGAARNIENGGSLTILATALIETGSKMDEVIFEEFKGTGNMELRLSRHLADKRIFPAVDVNASGTRREEMLLSADEVKITWKLRRALAGLDQQQALEIILSRLKETSSNVEFLMQVSKSAVGPTTANHGNGHH
>NZ_CP047173.1|WP_159985414.1|2822913_2823882_-|homoserine-kinase
MTSAVPVGRTVHVKVPATSANLGPGFDTLGLALSSYDELDVTAVAATGARVTVHGVGEGEVPTDETNLVVQAIAYTFADQRQEMPGIDVIARNIIPHGRGMGSSGAAIVSGIMAAKGLLDGIVELDSDDLLRIATEMEGHPDNVAPALFGGLTIAWVEPGAEGGAEAPLRPRSKKLMVHRGVSPVVFVPAHTMSTRLARSLQPISVPHEDAVFNVSRSSLLIAALIQSPELLFAATEDKLHQNYRAAAMPETSELIALLRSHGYAAVVSGAGPSVLVLCSDPAQRLAAADLVAREARTPWRAHMLAVDFKGATVGIASRGAA
>NZ_CP047173.1|WP_159985415.1|2823878_2824955_-|threonine-synthase
MAKQWRGVLHEYADRLDVTEATPVITLGEGGTPLIPAAALSARTGAKVWVKYEGMNPTGSFKDRGMTMAISKAVEHGAKAVICASTGNTSASAAAYATHAGITAAVLVPEGKIALGKLSQAIAHNAQLLQVQGNFDDCLDIARDLAKNYPVHLVNSVNPDRIAGQKTAAFEVVEVLGDAPDLHIVPVGNAGNYTAYFRGYSEELERGATTKLPRMFGFQAAGSAPIVHGAPVRHPETIASAIRIGNPASWELALNARSVSDGYFGAITDEKILEAYRILAGEVGVFVEPASAISVAGLLERAEAGEIPKDSTVVLTVTGHGLKDPQWALRTADGDDITPTVVPVDTAAIADVLGLAGA
>NZ_CP047173.1|WP_159985416.1|2824956_2826297_-|homoserine-dehydrogenase
MIEYRSLRVALLGAGSVGAQVARLLLDHGDELAQRVGAPLELAGVAVRDLDAPRTTDIPREYLTTDAEALILGADIVVELIGGLEPARSYILKAISSGADVITANKALLAAHGNELFEAADQVGAQLNYEAAVAGAIPIIRPLRDSLAGDRVHRILGIVNGTTNFILDRMDTEHSTLEEALALATDLGYAEADPTADIEGYDAAQKAAILARLAFHTDVPVSLVHREGITGVTQQQVEQARAGGFVIKLLAICERLVDAKTGEEGVSARVYPALVHRSHPLAAVHGANNAVFVEAEAAGSLMFYGAGAGGVETASAVLGDVVSAARRHVVGGPGLVTSASSGLPVLPIGHVTTRYQVTLDVLDRPGVLAQIAGVFAEHGVSVETLVQTPPVLDPLVEAGAERREPTATLVIGTHAAAESDLAATVTALQSHGFVGAVTSVLRVEGA
>NZ_CP047173.1|WP_159985417.1|2826293_2827724_-|diaminopimelate-decarboxylase
MEHDDASVGAPRHPLAPEWLQCPDDANALASGVWSSGAARSAEGVLEVAGVAATELAARFGTPLYVVDEDDARGRAAATLRAFERELGAIGTGVTVYYAGKAFLSTEVARWMRAEGLNIDVCSGGELAVALAAGVEPGHLGLHGNNKSLAEIDRAVEAGVGAIVLDSVLEIERVAAAAERHGRVQPVRLRVNSGVHAHTHSFLATAHEDQKFGITLEDCPAAVARIRSHASLDFLGLHCHIGSQIFGSAGFAESASRLLAVHAGLLADGPVPQLNLGGGFGIAYTSVDDPTPIEEIAAAIARIVGEQCAQHGIPVPHIAIEPGRSLIGPAGLTLYEVGTIKDVAVGADGVRRYVSVDGGMSDNARPALYGADYTARIANRTSAAEPALVRVAGKHCESGDIVVHDDFLPSDVQPGDLLAVAATGAYCWSLSSNYNYLGRPTVVAVRDGLARVIVRGETEDDLLRRDAGIERKAILR
>NZ_CP047173.1|WP_159985418.1|2827912_2828689_-|LmeA-family-phospholipid-binding-protein
MTAAEAPRRHRGRRIAIVVVVLVVLLAAAAVVGDVLARRAVADTAASSIREALSLPADHPVDVEVAGWAVLPQLIGGTLDRLDIRSEDVAFGDLNGDVDATLEGVPASGSGAIGSGRATVALDPASVSTLVAARSELPIDGVTLDPPLVRLNTSVEVLGLTLAAGVGIELGAADGAIELTPSEVTAGGTTISAADVEDRFGAVAEGLLAARSVCIADAVPQGLSLTDVEVTADSLDASFDLSPTFLSDPAQQETGVCA
>NZ_CP047173.1|WP_159985419.1|2828685_2830344_-|arginine--tRNA-ligase
MTPEQLAASLHALVLDAVQRRGSAAEVALGDVVLERPKNRDHGDWASNIAMKLAKKVGANPRELATELAEGLGAVDGVASVEVAGPGFLNVRLEAAAAGALAGVIVDAGEAYGTGSLYSGVRMNLEFVSANPTGPIHIGGVRWAAVGDSLARVLIAQGAEVTREYYFNDHGAQIDRFTRSVLAAYRGEPTPEDGYGGDYIADIADRVVAAYPGDLSVLPEAELAETFRSIGIDLMFGEIKQSLHEFGVDFDVYFHENSLHESHAVERAIERLRDLGHIYEADGATWLRTTDFGDDRDRVIVKSDGEAAYIAGDLAYYLDKRERGFDRAIIMLGADHHGYIGRMMAMCAAFGDTPGVNLEILIGQLVNLIRDGQAVRMSKRAGTVVSMEDLVEAVGVDAARYSLVRSSADSTLDIDLDLLTKRSNDNPVYYVQYAHARTRQVAAKAEASGVGREPFAPETLVHPTESALLGGLQEFPRMVALAAELREPHRVARYLEEIAGLYHRWYDNCRVVPQGEDPIEAVHSTRLRLNEATAQVLRNGLSMLGVTAPDRM
>NZ_CP047173.1|WP_159985420.1|2830407_2830932_+|hypothetical-protein
MRRPAALALLVAASALTGCAQAAEPAPSASDAITGTPVPVGCEELVPSSALTGLWAGFAPSDAVEPTAVSAEIAGYDGLVCGWSGAEGADFQVAVAQLDPAIIEALKNEYFTTSEAVPTYGRPPEIEGYYEVADGRGVADAFVGDYWLEASSASFVEPGDPEPLVRAALAALAG
>NZ_CP047173.1|WP_159985421.1|2830976_2831771_-|transglutaminase
MLRTVSASLGLRLNGPTDLIFLVAATRTGDGFEDSFTAVLDGEPVPVREFPARHGARVHRVAATAGALQVEYRGRVEGRGAPDEPSELELVEYLRPSRYAEADALGGIARREFGRAKGLEALTAVEEWVHGHLSYVYGSTVGTGGAAQVIQSGQGVCRDFAHTVAALLRALDIPARVTAVYAPGLEPRDFHAVSEAWVDGAWHVVDATRLAPRPSMLRISSGRDTADTAFLSSYLTDLRLETMSVEASSDVVVEDDHVSPVRLG
>NZ_CP047173.1|WP_159985422.1|2832430_2833222_-|hypothetical-protein
MGRFRALSHYWGSKAVRIAAVVVALAVAATAVVVLLPDERSAVEIPADATFSPTTPPPAAAPPDPIALPAQPRVLVFGDSYTAGFGATDPETDGFARVLPRYLPGWDLAVEGVGSTGYLKAGNDGQGTFLQRIERLSYGDEFQLVVLQGGSNDQNVENAGLAEAVDATVTALRSRFPSAQLVMLGPVSVSTNSNANKRYVNAVLQEYARENSIQFISPLFERWFPTESQDEWVNIDVGHPNTAGYDHMAQELATDLTAIVVPR

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Crispr_ID: NZ_CP047173_10

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP047173_10

3066970-3067111

Orphan

Consensus_repeat	Method
TTCCACGAGCCGAAGCTTCCGCGGGCCTCCCTCCGGCTCGCGAAAACACC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP047173_10

>merge|NZ_CP047173|10|3066970-3067111|CRISPRCasFinder
TTCCACGAGCCGAAGCTTCCGCGGGCCTCCCTCCGGCTCGCGAAAACACCTTCGGCTCGCCGAAACACGCGAATCCGGCGAGCCGGACGTCATTCCACGAGCCGAAGCTTCCCCGGGCCTCCCTCCGGCTCGCGAAAACACC

>NZ_CP047173|10|10|3066970-3067111|CRISPRCasFinder
TTCCACGAGCCGAAGCTTCCGCGGGCCTCCCTCCGGCTCGCGAAAACACC	TTCGGCTCGCCGAAACACGCGAATCCGGCGAGCCGGACGTCA
TTCCACGAGCCGAAGCTTCCCCGGGCCTCCCTCCGGCTCGCGAAAACACC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP047173.1\|WP_159985586.1\|3060789_3061923_-\|NTP-transferase-domain-containing-protein	unknown	unknown	gnl\|CDD\|133003
NZ_CP047173.1\|WP_167306110.1\|3071119_3072079_+\|1-phosphofructokinase-family-hexose-kinase	unknown	unknown	gnl\|CDD\|238570
NZ_CP047173.1\|WP_159985596.1\|3075402_3076428_+\|tryptophan--tRNA-ligase	unknown	unknown	gnl\|CDD\|234866
NZ_CP047173.1\|WP_159985590.1\|3066036_3066798_+\|succinate-dehydrogenase-iron-sulfur-subunit	unknown	unknown	gnl\|CDD\|235652
NZ_CP047173.1\|WP_159985595.1\|3074516_3075350_+\|exodeoxyribonuclease-III	unknown	unknown	gnl\|CDD\|197336
NZ_CP047173.1\|WP_159985592.1\|3069024_3070173_+\|YihY/virulence-factor-BrkB-family-protein	unknown	unknown	gnl\|CDD\|377085
NZ_CP047173.1\|WP_159985598.1\|3077229_3077418_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP047173.1\|WP_159985585.1\|3057238_3060646_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP047173.1\|WP_159985594.1\|3072075_3072528_+\|PTS-transporter-subunit-EIIA	unknown	unknown	gnl\|CDD\|334031
NZ_CP047173.1\|WP_159985591.1\|3067154_3068027_+\|DUF559-domain-containing-protein	unknown	unknown	gnl\|CDD\|380141
NZ_CP047173.1\|WP_159985583.1\|3054246_3055767_-\|ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|226364
NZ_CP047173.1\|WP_159985582.1\|3052939_3054250_-\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|226962
NZ_CP047173.1\|WP_159985593.1\|3070361_3071123_+\|DeoR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224268
NZ_CP047173.1\|WP_159985588.1\|3063705_3064149_+\|succinate-dehydrogenase	unknown	unknown	gnl\|CDD\|239580
NZ_CP047173.1\|WP_159985584.1\|3055925_3057011_-\|BMP-family-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|380577
NZ_CP047173.1\|WP_159985587.1\|3062011_3063136_+\|glycosyltransferase	unknown	unknown	gnl\|CDD\|340842
NZ_CP047173.1\|WP_167306111.1\|3072524_3074354_+\|PTS-fructose-like-transporter-subunit-IIB	unknown	unknown	gnl\|CDD\|236740
NZ_CP047173.1\|WP_159985597.1\|3076435_3077161_+\|HAD-IA-family-hydrolase	unknown	unknown	gnl\|CDD\|223943
NZ_CP047173.1\|WP_159985589.1\|3064195_3066034_+\|succinate-dehydrogenase-flavoprotein-subunit	unknown	unknown	gnl\|CDD\|236185
NZ_CP047173.1\|WP_132435881.1\|3063274_3063709_+\|succinate-dehydrogenase,-cytochrome-b556-subunit	unknown	unknown	gnl\|CDD\|239581

Protein	Function_ID	Function_description	E-value
NZ_CP047173.1\|WP_159985586.1\|3060789_3061923_-\|NTP-transferase-domain-containing-protein	gnl\|CDD\|133003	cd02509, GDP-M1P_Guanylyltransferase, GDP-M1P_Guanylyltransferase catalyzes the formation of GDP-Mannose. GDP-mannose-1-phosphate guanylyltransferase, also called GDP-mannose pyrophosphorylase (GDP-MP), catalyzes the formation of GDP-Mannose from mannose-1-phosphate and GTP. Mannose is a key monosaccharide for glycosylation of proteins and lipids. GDP-Mannose is the activated donor for mannosylation of various biomolecules. This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase and mannose-1-phosphate guanylyltransferase. This CD covers the N-terminal GDP-mannose-1-phosphate guanylyltransferase domain, whereas the isomerase function is located at the C-terminal half. GDP-MP is a member of the nucleotidyltransferase family of enzymes.	3.71865e-111
NZ_CP047173.1\|WP_167306110.1\|3071119_3072079_+\|1-phosphofructokinase-family-hexose-kinase	gnl\|CDD\|238570	cd01164, FruK_PfkB_like, 1-phosphofructokinase (FruK), minor 6-phosphofructokinase (pfkB) and related sugar kinases. FruK plays an important role in the predominant pathway for fructose utilisation.This group also contains tagatose-6-phophate kinase, an enzyme of the tagatose 6-phosphate pathway, which responsible for breakdown of the galactose moiety during lactose metabolism by bacteria such as L. lactis.	5.45117e-99
NZ_CP047173.1\|WP_159985596.1\|3075402_3076428_+\|tryptophan--tRNA-ligase	gnl\|CDD\|234866	PRK00927, PRK00927, tryptophanyl-tRNA synthetase; Reviewed.	0
NZ_CP047173.1\|WP_159985590.1\|3066036_3066798_+\|succinate-dehydrogenase-iron-sulfur-subunit	gnl\|CDD\|235652	PRK05950, sdhB, succinate dehydrogenase iron-sulfur subunit; Reviewed.	1.90636e-143
NZ_CP047173.1\|WP_159985595.1\|3074516_3075350_+\|exodeoxyribonuclease-III	gnl\|CDD\|197336	cd10281, Nape_like_AP-endo, Neisseria meningitides Nape-like subfamily of the ExoIII family purinic/apyrimidinic (AP) endonucleases. This subfamily includes Neisseria meningitides Nape and related proteins. These are Escherichia coli exonuclease III (ExoIII)-like AP endonucleases and belong to the large EEP (exonuclease/endonuclease/phosphatase) superfamily that contains functionally diverse enzymes that share a common catalytic mechanism of cleaving phosphodiester bonds. AP endonucleases participate in the DNA base excision repair (BER) pathway. AP sites are one of the most common lesions in cellular DNA. During BER the damaged DNA is first recognized by DNA glycosylase. AP endonucleases then catalyze the hydrolytic cleavage of the phosphodiester bond 5' to the AP site, and this is followed by the coordinated actions of DNA polymerase, deoxyribose phosphatase, and DNA ligase. If left unrepaired, AP sites block DNA replication, and have both mutagenic and cytotoxic effects. AP endonucleases can carry out a variety of excision and incision reactions on DNA, including 3'-5' exonuclease, 3'-deoxyribose phosphodiesterase, 3'-phosphatase, and occasionally, nonspecific DNase activities. Different AP endonuclease enzymes catalyze the different reactions with different efficiences. Many organisms have two AP endonucleases, usually one is the dominant AP endonuclease, the other has weak AP endonuclease activity; for example, Neisseria meningitides Nape and NExo. Nape, found in this subfamily, is the dominant AP endonuclease. It exhibits strong AP endonuclease activity, and also exhibits 3'-5'exonuclease and 3'-deoxyribose phosphodiesterase activities.	3.9403e-113
NZ_CP047173.1\|WP_159985592.1\|3069024_3070173_+\|YihY/virulence-factor-BrkB-family-protein	gnl\|CDD\|377085	pfam03631, Virul_fac_BrkB, Virulence factor BrkB. This family acts as a virulence factor. In Bordetella pertussis, BrkB is essential for resistance to complement-dependent killing by serum. This family was originally predicted to be ribonuclease BN, but this prediction has since been shown to be incorrect.	4.98466e-26
NZ_CP047173.1\|WP_159985594.1\|3072075_3072528_+\|PTS-transporter-subunit-EIIA	gnl\|CDD\|334031	pfam00359, PTS_EIIA_2, Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2.	5.78668e-38
NZ_CP047173.1\|WP_159985591.1\|3067154_3068027_+\|DUF559-domain-containing-protein	gnl\|CDD\|380141	pfam18741, MTES_1575, REase_MTES_1575. Vsr REase Fold. Fused to HEPN (SWT1/Abi2 family), along with Transglutaminase and wHTH.	1.16195e-06
NZ_CP047173.1\|WP_159985583.1\|3054246_3055767_-\|ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|226364	COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only].	0
NZ_CP047173.1\|WP_159985582.1\|3052939_3054250_-\|ABC-transporter-permease	gnl\|CDD\|226962	COG4603, COG4603, ABC-type uncharacterized transport system, permease component [General function prediction only].	6.12729e-82
NZ_CP047173.1\|WP_159985593.1\|3070361_3071123_+\|DeoR-family-transcriptional-regulator	gnl\|CDD\|224268	COG1349, GlpR, Transcriptional regulators of sugar metabolism [Transcription / Carbohydrate transport and metabolism].	4.54826e-88
NZ_CP047173.1\|WP_159985588.1\|3063705_3064149_+\|succinate-dehydrogenase	gnl\|CDD\|239580	cd03500, SQR_TypeA_SdhD_like, Succinate:quinone oxidoreductase (SQR) Type A subfamily, Succinate dehydrogenase D (SdhD)-like subunit; SQR catalyzes the oxidation of succinate to fumarate coupled to the reduction of quinone to quinol. Members of this subfamily reduce low potential quinones such as menaquinone and thermoplasmaquinone. SQR is also called succinate dehydrogenase or Complex II, and is part of the citric acid cycle and the aerobic respiratory chain. SQR is composed of a flavoprotein catalytic subunit, an iron-sulfur protein and one or two hydrophobic transmembrane subunits. Members of this subfamily are similar to the Thermoplasma acidophilum SQR and are classified as Type A because they contain two transmembrane subunits as well as two heme groups. Although there are no structures available for this subfamily, the presence of two hemes has been proven spectroscopically for T. acidophilum. The two membrane anchor subunits are similar to the SdhD and SdhC subunits of bacterial SQRs, which contain heme and quinone binding sites. The two-electron oxidation of succinate in the flavoprotein active site is coupled to the two-electron reduction of quinone in the membrane anchor subunits via electron transport through FAD and three iron-sulfur centers. The reversible reduction of quinone is an essential feature of respiration, allowing transfer of electrons between respiratory complexes.	1.36984e-31
NZ_CP047173.1\|WP_159985584.1\|3055925_3057011_-\|BMP-family-ABC-transporter-substrate-binding-protein	gnl\|CDD\|380577	cd06354, PBP1_PrnA-like, periplasmic binding domain of basic membrane lipoprotein, PnrA, in Treponema pallidum and its homologs from other bacteria and Archaea. Periplasmic binding domain of basic membrane lipoprotein, PnrA, in Treponema pallidum and its homologs from other bacteria and Archaea. The PnrA lipoprotein, also known as Tp0319 or TmpC, represents a novel family of bacterial purine nucleoside receptor encoded within an ATP-binding cassette (ABC) transport system (pnrABCDE). It shows a striking structural similarity to another basic membrane lipoprotein Med which regulates the competence transcription factor gene, comK, in Bacillus subtilis. The members of PnrA-like subgroup are likely to have similar nucleoside-binding functions and a similar type 1 periplasmic sugar-binding protein-like fold.	6.40282e-82
NZ_CP047173.1\|WP_159985587.1\|3062011_3063136_+\|glycosyltransferase	gnl\|CDD\|340842	cd03814, GT4-like, glycosyltransferase family 4 proteins. This family is most closely related to the GT4 family of glycosyltransferases and includes a sequence annotated as alpha-D-mannose-alpha(1-6)phosphatidyl myo-inositol monomannoside transferase from Bacillus halodurans. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility. The members of this family are found mainly in bacteria and eukaryotes.	5.86384e-91
NZ_CP047173.1\|WP_167306111.1\|3072524_3074354_+\|PTS-fructose-like-transporter-subunit-IIB	gnl\|CDD\|236740	PRK10712, PRK10712, PTS system fructose-specific transporter subunits IIBC; Provisional.	5.70105e-133
NZ_CP047173.1\|WP_159985597.1\|3076435_3077161_+\|HAD-IA-family-hydrolase	gnl\|CDD\|223943	COG1011, COG1011, Predicted hydrolase (HAD superfamily) [General function prediction only].	5.61228e-31
NZ_CP047173.1\|WP_159985589.1\|3064195_3066034_+\|succinate-dehydrogenase-flavoprotein-subunit	gnl\|CDD\|236185	PRK08205, sdhA, succinate dehydrogenase flavoprotein subunit; Reviewed.	0
NZ_CP047173.1\|WP_132435881.1\|3063274_3063709_+\|succinate-dehydrogenase,-cytochrome-b556-subunit	gnl\|CDD\|239581	cd03501, SQR_TypeA_SdhC_like, Succinate:quinone oxidoreductase (SQR) Type A subfamily, Succinate dehydrogenase C (SdhC)-like subunit; SQR catalyzes the oxidation of succinate to fumarate coupled to the reduction of quinone to quinol. Members of this subfamily reduce low potential quinones such as menaquinone and thermoplasmaquinone. SQR is also called succinate dehydrogenase or Complex II, and is part of the citric acid cycle and the aerobic respiratory chain. SQR is composed of a flavoprotein catalytic subunit, an iron-sulfur protein and one or two hydrophobic transmembrane subunits. Members of this subfamily are similar to the Thermoplasma acidophilum SQR and are classified as Type A because they contain two transmembrane subunits as well as two heme groups. Although there are no structures available for this subfamily, the presence of two hemes has been proven spectroscopically for T. acidophilum. The two membrane anchor subunits are similar to the SdhD and SdhC subunits of bacterial SQRs, which contain heme and quinone binding sites. The two-electron oxidation of succinate in the flavoprotein active site is coupled to the two-electron reduction of quinone in the membrane anchor subunits via electron transport through FAD and three iron-sulfur centers. The reversible reduction of quinone is an essential feature of respiration, allowing transfer of electrons between respiratory complexes.	7.17822e-43

>NZ_CP047173.1|WP_159985590.1|3066036_3066798_+|succinate-dehydrogenase-iron-sulfur-subunit
MSSATLEQPPAAPAAPEAFTVTFIIRRFDPEQDAEPRWQDFDVEMFSTDRVLDALHRIKWDQDGSLTFRRSCAHGICGSDAMRINGRNRLACKTLIKDLDISQPIYIEAIKGLPLEKDLVVDMEPFFASYREVQPFLIANTPPTKGKERVQSVADRARFDDTTKCILCAACTSSCPVFWTDGQYFGPAAIVNAHRFIFDSRDDAGGARLDILNDKEGVWRCRTTFNCTEACPRGIQITQAIAEVKQAVIRGRA
>NZ_CP047173.1|WP_159985589.1|3064195_3066034_+|succinate-dehydrogenase-flavoprotein-subunit
MSTPGHVHSGGADQSAFTQTLGADGVHYHQFDVVIVGAGGAGMRAAIEAGPKAKTAVISKLYPTRSHTGAAQGGMAAALANVEEDSWEWHTFDTVKGGDYLVDQDAAEILAKEAIDAVIDLENMGLPFNRTEDGKIDQRRFGGHTRDHGKAPVRRACYAADRTGHMILQTLFQNCVRLGINFYNEFYVLDLVMTKVDGVDKPSGVVAYELATGELHVFQAKAIIFATGGFGKIYKTTSNAHTLTGDGVGIIWRKGLPLEDMEFFQFHPTGLAGLGILLTEGARGEGAILRNASGERFMERYAPTIKDLAPRDIVARCMVQEVAEGRGAGPHKDYVLLDCTHLGAEVLETKLPDITEFARTYLGVDPVVEPVPVMPTAHYAMGGIPTNVKAEVLSDNTTVVPGLYAAGECACVSVHGSNRLGTNSLLDINVFGKRSGNNAADYSQTVDFTPLPEDPAGAIRDMLASLRGATGTERIASIRKELQDEMDKNAQVFRTDESLEQVTGTIQRLRDRFRNISVQDKGKRFNTDLLEAVELGFLLDLAEVVVYSARNRKESRGGHMRDDYPKRDDTEYMQHTMAYLSGDAHSSDAGDHIRLDWKPVVITRYQPMERKY
>NZ_CP047173.1|WP_159985588.1|3063705_3064149_+|succinate-dehydrogenase
MSTVAAPRTPHVPTRSSGTNWEKWGWIYMRASGVVLIVLIFGHLIFNLLLGDGIKAIDFGFVGGKLANPFWQWWDVAMLWLALIHGGNGMRTLVNDYATSPVLARAFKGGILVSVVALIALGTYVVFGFNPCPTGGDPSLLPSFCAA
>NZ_CP047173.1|WP_132435881.1|3063274_3063709_+|succinate-dehydrogenase,-cytochrome-b556-subunit
MSVSAAQTLAPRKQGKIRRPAGTLYRGREGMWSWVLHRITGVAIFFFLLVHVLDTALIAVSPEAYNAVIAQYKNPIMGLGETGLVAAIAFHAMNGLRIILVDFWSWATRHQRLLFWVVIGLWVVLMLGFAPRHLINVFSEGGAH
>NZ_CP047173.1|WP_159985587.1|3062011_3063136_+|glycosyltransferase
MRVAVVTESFLPSLNGVTTSVLRVLDEFAASGIEALVVCPAAGAPGHYAGHRVVEHPAIAYRDFPVGIPTLALTRELAAFEPDVVHVASPFLLGARAIASANRLGVPSVAIYQTDVPRFAARYGIRGARALAWRVIRQIHAGADLTLAPSTSALDDLAAAGIERTALWGRGVQSDRFHPRMRSSPYAHEVRSGVDEGDALVGYIGRVSPEKRVERLACLSSLPGADLVVGGYGPSSARVAAALGPAARMLGRLDGERLPAVFAALDVFVHTGTEETFGQTVQEAQASGTAVVAPHAGGPTDLIEHGVDGLLYAPESDSDLRRQVERLLGDPGLRSRLGEAGRRRVLGRTWSVLTDELLAHYATVGAPVSMARGS
>NZ_CP047173.1|WP_159985586.1|3060789_3061923_-|NTP-transferase-domain-containing-protein
MTSPETDGRAPLDRFYSVIPAGGIGSRLWPLSRADAPKFLHDLTGSGQTLLRDTWDRLAPISGADRIMVVTGRAHRAAVERQLESLEDLNVVLESEPRDSSAAIGLAAAILERREPGVIIGSFAADHVISGQHLFHDAVAEAVVAADAGYIATIGITPTEPAVGFGYIHTGDHLGIEGAAHTLAVDSFVEKPDAETARSYVQSGQYLWNAGMFIARADRLLEELGRSKPKLLAGLLELAEAWDTPERGAVVDRIWPGLEKIAIDYSVAEPAAKEGKLAVVPGHFSWDDVGDFASIAKLHASGLRSDLAILGEDARVLADSATGIVVSGGNRTIALIGVKDIVVVDTPDALLVTTTENAQKVKGVVDALRLSGRTDVL
>NZ_CP047173.1|WP_159985585.1|3057238_3060646_-|hypothetical-protein
MIVLTRSRSRSLVGGRRHSGVLAAVVALTVLVGVLTPVPSASAAPTDPVAPSSTVDVRSPGDAGMLLVQPYSTKRYLVVQVAPGIGVTSTVSPEADSLAPTGAVLEVDRFQKFVDRVSGVLDRIRATPTGEAALKAIPFLLAPGAKNVWTVSGPPGAAVRTSPVQIVFAESTSTRAAGRDVPFGVDPDGAGSLITLDGAFWPAAAAEGIAWRDPSTGAARLLDPVMTAQHELMHAIAALGGAAPSQTSVPVPVRAWSSAAALSGPTDTEVSRDVMLAEVFTHGGPRGLTAARRALTTPGPDNTPAVFSSEEFPSIAVDPWFLRSRRFALDRYSAADTPAADRHGWLMAAAARLSIAVRPPTELVFANERGVRPRPEYVPSLLLTENRGAAWFPVRVPQDFSDWEASDVRGRTDVVPRDGTWDDPGSAPLEAVGSSVPEATKQLSCHDCATAPVTRLSSEDAAAFEARVASEVKAGPDAVRAVQRAQLVDPVGDAVRQVHGPGFAGGVWSRYPELVAGLEKAPLRFFSGMHGPAAAGVGLDVWGLMQGDVSALSVVNTTSDLVTSVAPMLGARIANFAGAAGAVVGFVTSMIAFSQGGSETDFIASMVGLLVGLMPELAPFMVLYMAASLWSHPSPVEEAMSAGQQMIVAFKDWAPDALERSSLALADSVRDGVSDRMDEARYRSDYLQTKVDLAELAEGHDPTTGGKDGTQWEKQQIRDATDEELERLASAGSTSLDESLDLLADEYNNGAVFTEFRKKWAEQMNDDGGVRIYGIKHHVDLDSLPTTNPEPVRVDAFTTPVGSIRSLMQSRYRHALDELDLWTPSRNAFATPMVTEQMVLDSVAPVQRDWAFTGPLTESTAPVKDVREFTGNGTPGSFLQLWNPDTKELVCGATKVNAIGLWTCHRSIGFQGPGLHVTYELRSSSTDTGGFTSTGKSLTVTTSGTPVPRPVIEWGPDLRVEGRTVHGTATPGALVHLETMPPDSIDTTRTGLPASPTATVDSEGYFTLTATEGTPGGNTRLVATCRDHTIAERLVIDTAPPLPTPVPETDEDSAIHITHLTATSIEGTVPPNQKIQIRLGETPVQLPIDTDSTGTFHFTPDTPLPTPQTITLRTWPTDTPWKQSTRTITWNGHDQ
>NZ_CP047173.1|WP_159985584.1|3055925_3057011_-|BMP-family-ABC-transporter-substrate-binding-protein
MTITTRKAAFGGLAALGVTALLAGCASAPEESGSSAAAGGDFLPCMVSDAGGFDDKSFNELGYNGLVKASEELGVTPKTVTSESETDYAPNLTSLVDQGCNLIITVGFALAEATSAAAEENTDIDFAIIDDASIDLPNVKPITFDTSQSAFLAGYAAASYSKTGVVGTYGGQQFPTVTIFMDGFADGVAYHNEQKGTDVKVVGWDVAAQTGSFTGGFAAGVEAKSAAQSLIDQNADVILPVGGPIFQSAIEAIRDSGKDIAMVGVDADLYETYPDGADLYLTSILKGIEAGTDDVTSTAGADAFDATPYVGTLENDGVGIAPFHDFESKVSADLQGELDTIKEGIIDGSITVESPSAPAAS
>NZ_CP047173.1|WP_159985583.1|3054246_3055767_-|ATP-binding-cassette-domain-containing-protein
MKLELRGITKRFGALVANDHIDLTVEPGEIHCLLGENGAGKSTLMNVLYGLYQAEEGDILLDDVVQRFSGPGDAMKAGIGMVHQHFMLVPVFSVAENVMLGHEETKSGGRLDLAAARARVRDISDRFGFDVDPDAIVEDLPVGVQQRVEIIKALSRDAKVLVFDEPTAVLTPQETDELIAIMRQLRASGTAIVFITHKLREVREVGDRITVIRLGQVVGEAAPTASNAELASLMVGRAVELTVQKGPATAGDEALVVSNLTVRDANGQAVVDDVSFEVRRGEILAIAGVQGNGQTELTEAIMGLQERVEGTVTLDGRRLDGLSVRRVLDAGVGFVPEDRTEDGLVAEFTIAENLMLDRSDSGPFVKGLGLRLKELERFAEERVREFDVRAQGITTHVGRLSGGNQQKVVLARELSRELRLFIAAQPTRGIDVGSIEFVHKRIVETRDTGVPVIVVSTELDEVAALADRIAVMYKGGIIGIVPADTPREVLGLMMAGQSPAEKGAAA
>NZ_CP047173.1|WP_159985582.1|3052939_3054250_-|ABC-transporter-permease
MSDAQLPAVDPDAESERATGLEPGQKPGQEARPGPIESGASRVLREILSGTALMSVLAVLLSLIAGGVLIAATDTDVQQAAGYFLARPLDTLQAIWQSVAGAYSSLFQGSVYNFRREGFANGIKPLTDTLAFATPLIAGGLGVALAFRVGLFNIGGRGQMLIAAACAGWVGFSFDLPFGVHLVITLAAGILGGALWGGLVGLLKARTGAHEVILTIMLNYVAFYLVSYLLRTPGALQAPGSNNPKSPGMKETAVFPDLLGSGYSLTLGFVFAILATIFVWWLLNRSSIGFKFRAVGENPHAARVAGIDVKNSYVYAMLLSGGLLGLAGSAQVMGTVTTGFTSGIDAGIGFDAITVALLGRSKPWGVFFAGILFGAFKAGGYSMQAAEGVPIDVVLVVQSLIVLFIAAPPLVRAIFRLPTPGVAPKRRSRRTTEVSA
>NZ_CP047173.1|WP_159985591.1|3067154_3068027_+|DUF559-domain-containing-protein
MPSTESGLGAAGAAEARQSRRMQYGVHHIGYLHAIGVDATAAVRSGALRRIRRGWYASPQASEEELRAAEACGSLSCISLLAEAGAFRPPDPRLHLAITSSSRPRPRELGEDVVAHWSRRARQPEYRSIRETRIDALTQVFLCQPLEFAVAVADSCLRRRLVRPDALALVLAALPRRFAVVAGLVNDRAESGTESITRVRLQLLGIVCEIQVEIEGVGRVDLVIDDWLIIEVDSRTWHDDPQAYQRDRERDRAAAERGYRTLRFTYADVMHHWPRTRESILAVHARGPQR
>NZ_CP047173.1|WP_159985592.1|3069024_3070173_+|YihY/virulence-factor-BrkB-family-protein
MTQAATDTPRGEAQRAEAQRTEAQRAEAPRGIPALFERIMRTRPVRVMLHYSESGGPLFASGLAFQALFAIFAALFVFFAVFGFVLRDNTALRDSLLQLLTSSVPGLIGDEKNSLVSIDTLLDSSILGWTGAIAAAGLLWTALNFLGSLRQAVRILFSLPGPTVLFVLLKLKDAGLALVFGAVLIVSAALSVFSTSFVDVAFDVLGIGSDSTLGRVTGTVVGLLIMLALDTATLAGSFRILSGIPIPWKNLWVGALMGGIALGALKVLGTQLLGGASRNPLLASFAVLIGLLIWFNLVCQVILIVASWISVGMSDAGISARKLTPDELEKEREEQLRRARRTLAEAERERLRAALPDASLLKRRRLEKQLLRLEDELEESAA
>NZ_CP047173.1|WP_159985593.1|3070361_3071123_+|DeoR-family-transcriptional-regulator
MYAPERHQAILDRARTDGRVEVRDLAQSLAVTPETIRRDLTSLEKRGLLRRAHGGAIPVERLGIEPEVAAREGHLAAEKDRIATAALAEVPDGGSIAIDAGTTTVRLAELLPLDRRLTVVTHSLPVAVALVGRPNIDLHLLGGHLRGVTQAAVGPWVAQVIPTVSVDVAFIGTNGLSRERGLTTPDLDEAVVKTALIAAARRVVVLADHSKFGRQDFGHVAPLSAVDTVITDTDVDDELADDIESAGPEVVRA
>NZ_CP047173.1|WP_167306110.1|3071119_3072079_+|1-phosphofructokinase-family-hexose-kinase
MIVTVTANPSIDVTLSTSGFAVGEVNRAHGVRRDPAGKGVNVARALARNGVEATAIYPADASTGLDLRTMLEAAGVASASAAIAQPIRTNITVVDDATGRTTKINEPGPAVTPEEAKALSALICDHVVSGPRWLVACGSVPPGLGDDFYPALGRLATHFGVPLAVDTSGAPLTAIIAAGTATLVKPNLEELEELLGRSLATVGDVVDGARTLLRLPDARALVSLGEHGALLVTAASSWWAGAPPVVPLSTVGAGDSTLAGYLSATDASEAERLRTAVAWGTAAVTLPGSEAPGPDSLRLDDVSVVENPDPTLPIGELSA
>NZ_CP047173.1|WP_159985594.1|3072075_3072528_+|PTS-transporter-subunit-EIIA
MTALTEASTVIVDLTAATKDEATAQLAKTLADAGRVTDLDGFLADVRDREAQMATGMPGGIGIPHARSSHVVSPSVAVGISKSKVDFGAPDGPADLIFLIAAPDGADQAHLKILAQLARKLIHESFTGSLRAATSGQEVADIIAREVVVS
>NZ_CP047173.1|WP_167306111.1|3072524_3074354_+|PTS-fructose-like-transporter-subunit-IIB
MKIVAVTSCIAGIAHTYMAAEALEQAAKKKGYDIQVETQGAAGSDPMSDQTIADADVVILAADLEVRGKDRFAGKPTLEVGTSEALAKAADVIDRAAAKVQDAPAAASTGAPRFVAVTSCIAGIAHTYMAAEALEQAAKKRGYPIHVETQGAAGSDEMTAGDIAAADVVILAADLEIRGKDRFAGKPILQVGVAEALSKPDEVLDRALALRGTGTAPAASAARSTPAAAPAAPKKVGVGTRIRQNLMTGVSYMIPFVAAGGLLIALSFLFGGYQIVSYTPQQIIDNGFNIANITDWAGVMFLIGGATFAFLVPVLSGFIAFGIADRPGIAPGFLGGAVAVTVGAGFLGGLASGFIAGYAALYISRIKLPAAFKSLMPVVIIPLIATFITGFLMFVVLGAPLRALSEGLSAWLSGLTGGNLIILGIILGLMMAFDMGGPVNKVAYAFATTGLASVPADGDPNSVQFKVMAIVMAAGMTPPLGLALATSLRKRLFTDAERQNGKAAYLLGASFISEGAIPFAAVDPLRVIPSAMIGSAVTGALVALFGSTLRAPHGGIWVTGLVGQPLLYLVAILVGMVVTAVCVIIAKSIKRAPVVAEVPEPATARAVAV
>NZ_CP047173.1|WP_159985595.1|3074516_3075350_+|exodeoxyribonuclease-III
MTTPLRIASVNVNGVRAAFRKGMGEWLAGRDVDILALQEVRASTDDLTGLLGDEWDVLHDEATAKGRAGVALCSRKRASIHRVALGADDFDSAGRWLEADYEVGGRSVTVVSTYVHSGGVGTPKQDEKMRFLDGMIERLPQLQAHTPLAAVMGDLNVGHRTLDIKNWKGNVKKAGFLPEERAYFDRFVGAEGEEGYNAGAGLGWVDLGRRFAGEVPGPYTWWSQRGQAFDTDTGWRIDYQLATPELAALARSYEIDRASAWDTRWSDHAPVVVDYEL
>NZ_CP047173.1|WP_159985596.1|3075402_3076428_+|tryptophan--tRNA-ligase
MTPSTPGAKPVIFSGMQPSSGSLHLGNHIGALTQWVAMQDSFDAYFCVVDLHAITVPQEPAELRERTRATAAQYIAAGIDPERSTLFIQSHVPAHAELAWVLNTVTGFGEAGRMTQFKDKSAKQGADTASVGLFTYPILMAADILLYQTAAVPVGEDQRQHLELTRDLAGRFNTRFGDTFTIPEPHIARETAKIYDLQNPGAKMSKSAESDAGLLSVLDEPKVTAKKIMRAVTDTESEVRFDRAAKPGVSNLLTIYSVLAERSIESLEQEYAGRGYGDLKKGLVEVVAATFDPIRERTAELLADPAELDRVLARAADRASETAERTLATVYERVGFLRRSR
>NZ_CP047173.1|WP_159985597.1|3076435_3077161_+|HAD-IA-family-hydrolase
MLQLALFDLDDTLFAHARAVREGIVAFAATLGDAYAGEAGALQRRWYALEEEHYHRYLAGELDYEGQRRARATAFAADAGIALSPEEASAWFAAYLGHYVAAWTLHDDALPVLDRLDAAGVRIGVITNGDLDFQTRKTDAIGLAERVEHLVASGEVGVTKPDERIFRVACERFGVAPGDALYVGDRLGTDAIGAARAGLRGVWLDRVGGPEHGRELPAEAVELGVRRIGSLDDLDAVAGLH
>NZ_CP047173.1|WP_159985598.1|3077229_3077418_-|hypothetical-protein
MTASKKDDDRARRNLLVLTGVGSVLMGVSALVEGLDTPYAIVSLLVGGFCASLMLVLLLEDR

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site	Prophage annotation

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage