CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP047135	Stenotrophomonas sp. 364 chromosome, complete genome	14 crisprs	DEDDh,csa3,cas3,WYL,Cas9_archaeal,DinG	0	2	2	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP047135_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP047135_1

104344-104425

Orphan

Consensus_repeat	Method
GCCGGGCGCTGCCCGGCTTGCATCAGGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP047135_1

>merge|NZ_CP047135|1|104344-104425|CRISPRCasFinder
GCCGGGCGCTGCCCGGCTTGCATCAGGCCGTCATGACACAAGCCACCGCGTAGAGCCGGGCTCTGCCCGGCTTGCATCAGGC

>NZ_CP047135|1|1|104344-104425|CRISPRCasFinder
GCCGGGCGCTGCCCGGCTTGCATCAGGC	CGTCATGACACAAGCCACCGCGTAGA
GCCGGGCTCTGCCCGGCTTGCATCAGGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP047135.1\|WP_159495554.1\|94951_95329_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP047135.1\|WP_159495562.1\|104618_105245_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP047135.1\|WP_159495561.1\|101519_104342_+\|bifunctional-[glutamate--ammonia-ligase]-adenylyl-L-tyrosine-phosphorylase/[glutamate--ammonia-ligase]-adenylyltransferase	unknown	unknown	gnl\|CDD\|236836
NZ_CP047135.1\|WP_159495565.1\|107954_108923_-\|nucleoside-diphosphate-sugar-epimerase	unknown	unknown	gnl\|CDD\|377637
NZ_CP047135.1\|WP_159499129.1\|92660_94208_+\|serine-hydrolase	unknown	unknown	gnl\|CDD\|365903
NZ_CP047135.1\|WP_159495556.1\|96081_96495_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP047135.1\|WP_159495553.1\|94161_94893_+\|peptidase-M15	unknown	unknown	gnl\|CDD\|350616
NZ_CP047135.1\|WP_159495555.1\|95552_95969_+\|EF-hand-domain-containing-protein	unknown	unknown	gnl\|CDD\|238008
NZ_CP047135.1\|WP_159495568.1\|111798_112236_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP047135.1\|WP_159495563.1\|105936_106452_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP047135.1\|WP_159495558.1\|97324_97873_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP047135.1\|WP_159495566.1\|109733_110441_+\|polyisoprenoid-binding-protein	unknown	unknown	gnl\|CDD\|225228
NZ_CP047135.1\|WP_159495559.1\|98007_99375_+\|DUF1338-family-protein	unknown	unknown	gnl\|CDD\|319958
NZ_CP047135.1\|WP_159495560.1\|99426_100941_-\|succinate-CoA-transferase	unknown	unknown	gnl\|CDD\|274588
NZ_CP047135.1\|WP_128098185.1\|109053_109644_+\|malonic-semialdehyde-reductase	unknown	unknown	gnl\|CDD\|180040
NZ_CP047135.1\|WP_159495557.1\|96543_97293_+\|HAD-hydrolase-like-protein	unknown	unknown	gnl\|CDD\|319817
NZ_CP047135.1\|WP_159495564.1\|107053_107917_-\|DUF2145-domain-containing-protein	unknown	unknown	gnl\|CDD\|227071
NZ_CP047135.1\|WP_159499131.1\|106463_106949_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP047135.1\|WP_159495567.1\|110728_111553_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP047135.1\|WP_038690846.1\|105305_105860_-\|queuosine-precursor-transporter	unknown	unknown	gnl\|CDD\|224652

Protein	Function_ID	Function_description	E-value
NZ_CP047135.1\|WP_159495561.1\|101519_104342_+\|bifunctional-[glutamate--ammonia-ligase]-adenylyl-L-tyrosine-phosphorylase/[glutamate--ammonia-ligase]-adenylyltransferase	gnl\|CDD\|236836	PRK11072, PRK11072, bifunctional [glutamate--ammonia ligase]-adenylyl-L-tyrosine phosphorylase/[glutamate--ammonia-ligase] adenylyltransferase.	0
NZ_CP047135.1\|WP_159495565.1\|107954_108923_-\|nucleoside-diphosphate-sugar-epimerase	gnl\|CDD\|377637	pfam06258, Mito_fiss_Elm1, Mitochondrial fission ELM1. In plants, this family is involved in mitochondrial fission. It binds to dynamin-related proteins and plays a role in their relocation from the cytosol to mitochondrial fission sites. Its function in bacteria is unknown.	4.24112e-96
NZ_CP047135.1\|WP_159499129.1\|92660_94208_+\|serine-hydrolase	gnl\|CDD\|365903	pfam00144, Beta-lactamase, Beta-lactamase. This family appears to be distantly related to pfam00905 and PF00768 D-alanyl-D-alanine carboxypeptidase.	2.1387e-55
NZ_CP047135.1\|WP_159495553.1\|94161_94893_+\|peptidase-M15	gnl\|CDD\|350616	cd14817, D-Ala-D-Ala_dipeptidase_VanX, D-Ala-D-Ala dipeptidase VanX. D-Ala-D-Ala dipeptidase (also known as D-alanyl-D-alanine dipeptidase vanX; VanX; EC 3.4.13.22) is a Zn2+-dependent enzyme that mediates resistance to the antibiotic vancomycin in Enterococci and other bacteria (both Gram-positive and Gram-negative). It is part of a gene cluster that affects cell-wall biosynthesis. The operon triggers the termination of peptidoglycan precursors by D-Ala-(R)-lactate instead of D-Ala-D-Ala dipeptides. The enzyme is stereospecific, as L-Ala-L-Ala, D-Ala-L-Ala and L-Ala-D-Ala are not substrates. It belongs in the MEROPS peptidase family M15, subfamily D.	8.60699e-113
NZ_CP047135.1\|WP_159495555.1\|95552_95969_+\|EF-hand-domain-containing-protein	gnl\|CDD\|238008	cd00051, EFh, EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.	2.24777e-08
NZ_CP047135.1\|WP_159495564.1\|107053_107917_-\|DUF2145-domain-containing-protein	gnl\|CDD\|227071	COG4727, COG4727, Uncharacterized protein conserved in bacteria [Function unknown].	1.5468e-86
NZ_CP047135.1\|WP_159495566.1\|109733_110441_+\|polyisoprenoid-binding-protein	gnl\|CDD\|225228	COG2353, COG2353, Uncharacterized conserved protein [Function unknown].	3.68277e-59
NZ_CP047135.1\|WP_159495559.1\|98007_99375_+\|DUF1338-family-protein	gnl\|CDD\|319958	cd16348, VOC_YdcJ_like, uncharacterized metal-dependent enzyme similar to Shigella flexneri YdcJ. The vicinal oxygen chelate (VOC) superfamily is composed of structurally related proteins with paired beta.alpha.beta.beta.beta motifs that provide a metal coordination environment with two or three open or readily accessible coordination sites to promote direct electrophilic participation of the metal ion in catalysis. VOC domain is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.	0
NZ_CP047135.1\|WP_159495560.1\|99426_100941_-\|succinate-CoA-transferase	gnl\|CDD\|274588	TIGR03458, Propionyl-CoA:succinate_CoA_transferase, succinate CoA transferase. This family of CoA transferases includes enzymes catalyzing at least two related but distinct activities. The E. coli YgfH protein has been characterized as a propionyl-CoA:succinate CoA transferase where it appears to be involved in a pathway for the decarboxylation of succinate to propionate. The Clostridium kluyveri CAT1 protein has been characterized as a acetyl-CoA:succinate CoA transferase and is believed to be involved in anaerobic succinate degradation. The propionate:succinate transferase activity has been reported in the propionic acid fermentation of propionibacterium species, where it is distinct from the coupled activities of distinct nucleotide-triphosphate dependent succinate and propionate/acetate CoA transferases (as inferred from activity in the absence of NTPs). The family represented by this model includes a member from Propionibacterium acnes KPA171202 which is likely to be responsible for this activity. A closely related clade not included in this family are the Ach1p proteins of fungi which are acetyl-CoA hydrolases. This name has been applied to many of the proteins represented by this model, possibly erroneously.	0
NZ_CP047135.1\|WP_128098185.1\|109053_109644_+\|malonic-semialdehyde-reductase	gnl\|CDD\|180040	PRK05365, PRK05365, malonic semialdehyde reductase; Provisional.	3.16309e-128
NZ_CP047135.1\|WP_159495557.1\|96543_97293_+\|HAD-hydrolase-like-protein	gnl\|CDD\|319817	cd07515, HAD-like, uncharacterized family of the haloacid dehalogenase-like (HAD) hydrolase superfamily. The haloacid dehalogenase-like (HAD) hydrolases are a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members include 2-L-haloalkanoic acid dehalogenase (C-Cl bond hydrolysis), azetidine hydrolase (C-N bond hydrolysis); phosphonoacetaldehyde hydrolase (C-P bond hydrolysis), phosphoserine phosphatase and phosphomannomutase (CO-P bond hydrolysis), P-type ATPases (PO-P bond hydrolysis) and many others. Members are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.	4.36022e-52
NZ_CP047135.1\|WP_038690846.1\|105305_105860_-\|queuosine-precursor-transporter	gnl\|CDD\|224652	COG1738, yhhQ, Uncharacterized member of the PurR regulon [General function prediction only].	2.80075e-31

>NZ_CP047135.1|WP_159495561.1|101519_104342_+|bifunctional-[glutamate--ammonia-ligase]-adenylyl-L-tyrosine-phosphorylase/[glutamate--ammonia-ligase]-adenylyltransferase
MPIPADAVPAALVPLVDRALARLALSLGDSGTWPPPAQVLDQVRLLAITSDFAIDTLCRQPALLAHLIQPGCPPLARPELDPQHPSDWPQRLRRYRTAASTRLIWRDLAGLDDVPATLAGATALAEDCLGIGLAALEQEFATRHGVVRAADGSAQQLVVFGLGKLGGGELNFSSDVDLVYAYPQGGESDGARPLAAEEYFARLGQRLARLLDETTVDGFSHRVDLRLRPFGSAGRVALSFAGMDQYFQREGRDWERYAWLKARAVAGDIAAGEAWLQTLRPFVYRRYLDFTALDGLREMKAAITAEVSRREMFDDIKRGPGGIREIEFLCQALQLIRGGREASLRERRLLHALPALVACGQMAVQDGDDLLHAYGFLRRLENRLQMLRDAQTHALPTDPTDRLRIATGLGYPDWDALVAALEVQRTRVSTEFGALLAPRKGQAAPNALSNYWRGLPDNGSAEILAEAGFHDPHSADQSLRDFAQSLGVKSLSDSARARLDRVLPALLHAATRSPQPDAALKRVLGLLQAILRRTSYLALLDEQPSALARLVDVLARSALLAERLAAYPLLLDELLDVRVSGPMPDADAMQAECDAALAVDDPEAALRLLNETRLALSFRMALATLDGRQRAVDSTRQLAELAQAVVVTVHALAAADMQQAHGVIPGGRFAIIGYGSLGGLELGFGSDLDLVFLHDHPADQDSSDGKRPLDPGRWYARLAQKVMALLGAVTAAGRLYDIDVRLRPDGGKGALVSSLASYTEYQRERAWTWEHQALVRARGIAGDATLLADFERVRAQTLARPRDTDVLYADVIKMRARMRTELDRSDAARLDLKQGAGGIVDLEFLLQIGVLDSAGAHPQVLEPRDTPGLIDALATIAWLPGGTRQGLHDAHAALLDVGLACTLDRRPRLAAPTPALEEARAVISAACEAAGLPFQTPHPA
>NZ_CP047135.1|WP_159495560.1|99426_100941_-|succinate-CoA-transferase
MSVDRIANARLRDRVVSAEAAAALIQPGETVAMSGFTGSGYPKAVPVALAQRIEAVHAQGLPFQISLMTGASTAPELDGALAKADGIAMRMPFQSDPDARNRINEGKLDYIDIHLSHVAQHVWFGFYGDIDTAVVEVSAIREDGSLVPSTSVGNNKTWLDLAKKVIIEVNEWQPAGVDGMHDIYYGTALPPHRKPIPLVHANDRIGETSLRCDPDKIVAVVRTNGPDRNSPFSPIDTTSEQIAEHLIDFLKHEVAKGRLPANLLPLQSGVGNIPNAVLAGLARSGFRDLAAFTEVIQDGMLDLLRDGVLSYASCTGFALSPQANETFKANIDFYRERIIMRTQEISNHPELVRRLGCIGMNGMIEVDLYGNVNSTHVMGTRIMNGIGGSGDFARNGFLSAFLSPSTAKNGSISAIVPMVSHVDHTEHDVSVIVTEQGLADLRGLTPRKRARVVIDNCAHPDFRDQLNDYFERASRDSYGKHTPHLLPEALSWHQRWLDTGTMKA
>NZ_CP047135.1|WP_159495559.1|98007_99375_+|DUF1338-family-protein
MSADRFVSPDDIRSLFAQAMSTMYRTEVPLYGTLVDLVAEINDAVLTANPALAEQLDRTDERSRLDQERHGAIRVGTAEELATLGRLFAVMGMHPVGYYDLSVAGVPVHSTAFRPRTAKALAHNPFRVFTSLLRLELIEDAALREESARILARRRIFTDAALALIDQAERDGGLSQDDARRFVIESLETFRWHGDATVSLATYHALHDAHRLIADVVSFRGPHINHLTPRTLDIDAAQAAMLARGIDAKAVVEGPPPRHCPILLRQTSFKALQETVHFPSGEAADAGTHTARFGEIEQRGLALTPKGRALYDQLLAQARDSGGAGSTGQDYPTRLAAAFTAFPDDHATLRREGLGYYRYALTDAGRADPAAIGDLPAEALIAAGLASADPIVYEDFLPVSAAGIFQSNLGGEEQRAYAAHANRGAFEQALGMQVEDEFAIYERLQAESLATLRNA
>NZ_CP047135.1|WP_159495558.1|97324_97873_+|hypothetical-protein
MTLRTWLVLLVLMLPWAALAQQTAEKSEAYVVDTGDAWVDAQLQDINHYAERYPDSFLDEVARYAGVSRGYIAALMYTHGWQAGDIYFACFWAHAIERGCRDSVQAWSRAVPEEGQPKRWEDVVAALPVTPTNLHWRALRHAIVASHDHWDRPITLDATLQRQLGDRAQRQRAASNPTPPAR
>NZ_CP047135.1|WP_159495557.1|96543_97293_+|HAD-hydrolase-like-protein
MMTSSPAPTGAIGLVGFDGDDTLWKSEDYYRKAEQDYLDILSRYIDVHDTQTARHLLEVQQRNLGVFRYGVKGMTLSMVEAAIEITQQMITARDLQQILDIGHDTLRHPVELIDGVRESVTEIARDYPVVLITKGDLFHQEAKIKLANLRDLFPRIEIVSEKDPETYARVLEEFDLPIERFCMVGNSLRSDIEPVITLGGWGIHTPYAVTWAHETQHGVADDEPRMVDAPTAFDWPQALRAIEAKAARA
>NZ_CP047135.1|WP_159495556.1|96081_96495_+|hypothetical-protein
MDHPGRRPPFDVYLPVPGEPPPQRVSHLAPGEVVVVTGASPGGCAESIPFEDHGPRWANAALQQVLGELNTRGLPFQYQPHDPEGPAALMAWWQETGQLASSYRQFSWQGPGQWLLTRIELPQLGVLGWDGPRPFGQ
>NZ_CP047135.1|WP_159495555.1|95552_95969_+|EF-hand-domain-containing-protein
MTIRNRKPLIALIVAAGSVLAIPAMAQSAQQSAAQAQNQAAQAQQAAAQAGQAADSAAGAAAQASQQASGGGQTWASVDTDGNGTISKTEAQVNAGLAQVFDQADSNKDGELSPDEYKAYVAAQQGKAASGSGAQPGN
>NZ_CP047135.1|WP_159495554.1|94951_95329_+|hypothetical-protein
MNLPLHFGLLGTLEAGLIALLVGLLVYALWHRLCRALGWTAGHAIGWACVIAVVVSAGIDAWNLFYMGMMRLESPLYARLFLAGIHDPNELGSRVVLEVAGALGGVALGWMIFSSRSGEKNASDG
>NZ_CP047135.1|WP_159495553.1|94161_94893_+|peptidase-M15
MTTRTCSSPASAIARSALLMLAVIGGAQAQPVKVSPARTVEQAGLVDLARQVPDIALDIRYAGSNNFTAHPVPGYDAPKCLLLAPAATALAAVEADLRAEGYRLRVFDCYRPAQSVQAFVRWAHDPAEQSRKALQYPDLDKPALLGGYIAETSGHSRAATVDLTLLDCRTGPCSALDMGTDFDFFGPRAHTDAADISALQRGNRQRLVQAMARHGFANYPLEWWHYTLRPEPDPHTAYDVPVR
>NZ_CP047135.1|WP_159499129.1|92660_94208_+|serine-hydrolase
MTLHRWRALVVALAVSASAIAAPAPPFQPMFDQARQHYALPGLAMAVVEDGQVVYQHTAGERRVGTGEAIDEDTLFKIASNSKAMTAALLARLVDRGALRWDDPVIRYLPQFRMHDPWVTEHMQVRDLLIHNSGLGLGAGDLMLWPEPNAFTRQDIIAGLAHLKPVTSFRSGYAYDNLMYVVAGEVAARAGGKPYDQLLREEVFVPLGMQRCQVGAWSVAAVGNVAQPHARRDGRNVVTQPDADTSPDLTSMAAGGIRCSLKDMTRWMQVLLDPAQVPGWLSDAQRRALWNAHMPMPIGARQRQWDNAHFAAYGYGWRLSDLDGQWKVAHTGTLSGMYSSLALLPDRRVGVVLLINGDAEDARTALMQAALRHYTAPDDSKGVLDYARLLRDEQEQRRDSGHVRPDTRARTPASLQATTAWQGRYRDPWLGPARVCPHNGRLRFQVEKSPQLQGTVMQLGARWLVQWDTLGADAEPWLQPQPGTPPTLALRAIDPDIDFSYDYQDLQFTRIGDCP
>NZ_CP047135.1|WP_159495562.1|104618_105245_-|hypothetical-protein
METDATYKIAVERQVRVRMAAVAATHADVRTRGLDWVVREGKTELASAGLYPLRAAGGWAATLTVHCPTAMAFCRTWADGTTSALPNPDMLLAVMSTAGGMPGFAGHSGVIVRAGTHDADALAQQLVDRLADAALTRALAWRTVPVALIDDVVAHSAFYAWPLQTVLYIAQRNGLAADAPQLRDALQRRAILRRGERDRALVQRVLRG
>NZ_CP047135.1|WP_038690846.1|105305_105860_-|queuosine-precursor-transporter
MSVRPSITFAPLTPRALLLAVLAMGAVVLGSNVLVQYPINDWLTWGAFSYPVAFLVSNLINRRFGPQAARKVAWAGFALAVVLSIWIATPRIAVASCLAFIAAQLLDITVFDRLRRGHWWRAPMVATTCSATLDTTIFWSIAFAGSSLPWVSWAAGDLAVKLTIGVFLLAPFRALLWKMAPRAA
>NZ_CP047135.1|WP_159495563.1|105936_106452_-|hypothetical-protein
MTKTFALSVLAVALLAPALPASAQDLSRASPVTSSVLATSVVSLAVITAPVWLSALGVSELHDASMPHNRAARAAAKKAGPLPPLTVERVAQQPDGAYRVDLRNPQAPDELAVVEWPARADNPATGVKAGDVLDFKPTPAGAGWTVANANGAALAFLPTTTATATSMSERF
>NZ_CP047135.1|WP_159499131.1|106463_106949_-|hypothetical-protein
MAVALCATSVPASAQMLTGNKHPVASSVIVTSIVSVVVITAPIWMVSAGVSKASDGSARRSRARAEAKKAQPLPPLTVEKVEHTADGGIQLALQNPQAPDDLAVLQWPAQADSPVTAVAVGDVLAFTPTEGGAGWNVANAQGTTLAFLPTDPDAAQPSTRW
>NZ_CP047135.1|WP_159495564.1|107053_107917_-|DUF2145-domain-containing-protein
MEDRRPAMITRLRQALLCGLLLGTAALAHAEPQCVERYPTPAALASMFDVALATTDALDALDGVDVVLVARGGQDLSKYGLRHSHVAFLLRGDDGQWRAVHLLNPCKTADSHLFREGVATFIGETSAHTDLRIGVPTPALRATLKTMLTQPAIQARALHETRYSVVAYPFSTEYQNSNQWILEVLAAALAQNEDGTLIVNRTQAQAWLKQHKYRPSTLHIGVAKRLGARFFVPNAAVTDHPAGERISGNYSVVTVESVFDFVQQQKGLQMELPIAHVAVDGITAPKP
>NZ_CP047135.1|WP_159495565.1|107954_108923_-|nucleoside-diphosphate-sugar-epimerase
MPYVKRWSPPWTITDGRAGNVRQAVALASALKRGAHQPLVLTPRAPWRWLAPRWLPGAARGFGEAFQQLAAEHPQLAIGCGRQAAGALRELRRGGTKVVQILDPRISARHWDLVVVPEHDRLRGSNVLTLLGSLNPVNDDWLACGRAAFAAFGALPGPRTALLVGGPTPHAPWHEPHMVQVFQQLAAQLRAEGGSLLATTSRRTPPALVGALRSAFADVPHVIWGDGGDGVNPYAGLLGWANRVVVSPDSVNLLSEACATRMPVAVALADQAQARLAQFQQALRERGRLQARWLDWHTDGRIEPLRETTRIAAEVQARLLPV
>NZ_CP047135.1|WP_128098185.1|109053_109644_+|malonic-semialdehyde-reductase
MSHVLNDAALDQLFRTARTQNAFLDTPVEDSQLQALYELLKWGPTAANGSPARFVFVKSPEAKAKLAPALSEGNHDKTLAAPVTVIVAFDEDFHEKLPYLFPHTDAKAWFDGPREARTEGAFRNGSLQGAYLILAARALGLDAGPMSGFDNAKVDEAFFKGTAIKSNFLVNLGYGDSSGLFPRLPRLSFDEAARIA
>NZ_CP047135.1|WP_159495566.1|109733_110441_+|polyisoprenoid-binding-protein
MTMTRKLLLPLALTLAIAACSKPADEAAAPAADAAPAAAATTPAADAAAAPAAPAAEAIQIASGTYKLDPTHTDVLAQWSHFGFSHPTAHFGAAEGTLVYDAADVTKSTVEVKLPLTGLNSFTAKFDEHLKSADFFDAAKFPAASFKSTKVEANGTNKLTVTGDLTIKDITKPVTLDVTINGGGEHPMAKVPAAGFDATTTIKRSDFGVGAYAPNVSDEVNIRITTEATGEKPAA
>NZ_CP047135.1|WP_159495567.1|110728_111553_+|hypothetical-protein
MQDAQYWMMEFWTGLSLLDLVGGSLIGTLVGLGLGIATWLAMHRRRWFARRNRWHHYTLATYVVLLPLLFAFTGLQLGFAAGAQRALYKQIDHFQPHLQTLVASWMVDFEQSLDDPALATLMRSDATVHDATRQVVDAYLADHPLPGASYLQGEGTLTRWTRSGIQHVRSALMSQWVEDSVSKEVAGYSGVDKKVFREALGMRMNELLHTKGVIRLLKAQLTSMMPGLYFGLLLPLLIIMALVLIEVGLAKRYGWRRVAANVTDASSKSAAMNA
>NZ_CP047135.1|WP_159495568.1|111798_112236_-|hypothetical-protein
MQAVSSSALADLIARAERADPALDAALTALAPSVGGNVAPLRAAMVPLAQALTALVQANADIGLVADELRRYQKFAAPGKPSLQIVQLRKQQATVKQAALIARQNFAQATHAFLRDGGLTAPARRLPTDFATAWLGKVAAAVAAE

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Crispr_ID: NZ_CP047135_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP047135_2

501311-501410

Orphan

Consensus_repeat	Method
AGCCACCCCATGGGTGGCTGCACACC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP047135_2

>merge|NZ_CP047135|2|501311-501410|CRISPRCasFinder
AGCCACCCCATGGGTGGCTGCACACCACAGGCACCCGCGCCATTCCCGCACCCACGCGGTTCCCACCGGGGTAGAGCCACCCCATGGGTGGCCGCACACC

>NZ_CP047135|2|2|501311-501410|CRISPRCasFinder
AGCCACCCCATGGGTGGCTGCACACC	ACAGGCACCCGCGCCATTCCCGCACCCACGCGGTTCCCACCGGGGTAG
AGCCACCCCATGGGTGGCCGCACACC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP047135.1\|WP_019182396.1\|502871_503180_+\|NAD(P)-transhydrogenase-subunit-alpha	unknown	unknown	gnl\|CDD\|378941
NZ_CP047135.1\|WP_159495833.1\|505895_506993_+\|branched-chain-amino-acid-aminotransferase	unknown	unknown	gnl\|CDD\|237363
NZ_CP047135.1\|WP_159495825.1\|497795_500105_+\|DUF1631-family-protein	unknown	unknown	gnl\|CDD\|377917
NZ_CP047135.1\|WP_159495822.1\|494601_495393_-\|N-formylglutamate-amidohydrolase	unknown	unknown	gnl\|CDD\|226441
NZ_CP047135.1\|WP_159495823.1\|495933_496887_-\|exodeoxyribonuclease-IX	unknown	unknown	gnl\|CDD\|235591
NZ_CP047135.1\|WP_159495819.1\|491361_492246_-\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|176114
NZ_CP047135.1\|WP_159495826.1\|500217_501303_+\|NAD(P)(+)-transhydrogenase-(Re/Si-specific)-subunit-alpha	unknown	unknown	gnl\|CDD\|240629
NZ_CP047135.1\|WP_159495829.1\|502178_502793_-\|RNA-polymerase-sigma-factor	unknown	unknown	gnl\|CDD\|236367
NZ_CP047135.1\|WP_038690351.1\|509789_510275_-\|asparaginase	unknown	unknown	gnl\|CDD\|223330
NZ_CP047135.1\|WP_159495832.1\|505286_505838_+\|putative-Fe-S-cluster-assembly-protein-SufT	unknown	unknown	gnl\|CDD\|213809
NZ_CP047135.1\|WP_159495827.1\|501418_501844_-\|DUF3106-domain-containing-protein	unknown	unknown	gnl\|CDD\|378633
NZ_CP047135.1\|WP_159495834.1\|507446_509192_+\|S8-family-serine-peptidase	unknown	unknown	gnl\|CDD\|173820
NZ_CP047135.1\|WP_159495820.1\|492353_493784_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|129794
NZ_CP047135.1\|WP_159495828.1\|501846_502182_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP047135.1\|WP_159495831.1\|504748_505168_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP047135.1\|WP_159495824.1\|496888_497464_-\|nitroreductase	unknown	unknown	gnl\|CDD\|380312
NZ_CP047135.1\|WP_159495821.1\|493847_494510_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP047135.1\|WP_128097436.1\|495385_495937_-\|NUDIX-hydrolase	unknown	unknown	gnl\|CDD\|239516
NZ_CP047135.1\|WP_159495818.1\|490384_491329_+\|prolyl-aminopeptidase	unknown	unknown	gnl\|CDD\|130316
NZ_CP047135.1\|WP_159495830.1\|503176_504631_+\|NAD(P)(+)-transhydrogenase-(Re/Si-specific)-subunit-beta	unknown	unknown	gnl\|CDD\|376743

Protein	Function_ID	Function_description	E-value
NZ_CP047135.1\|WP_019182396.1\|502871_503180_+\|NAD(P)-transhydrogenase-subunit-alpha	gnl\|CDD\|378941	pfam12769, PNTB_4TM, 4TM region of pyridine nucleotide transhydrogenase, mitoch. PNTB_4TM is the region upstream of family PNTB, pfam02233, that carries four of this transporters transmembrane regions. PNTB is the beta-subunit of pyridine nucleotide transhydrogenase. This family forms part of the Proton-translocating Transhydrogenase (PTH) Family.	7.78744e-33
NZ_CP047135.1\|WP_159495833.1\|505895_506993_+\|branched-chain-amino-acid-aminotransferase	gnl\|CDD\|237363	PRK13357, PRK13357, branched-chain amino acid aminotransferase; Provisional.	0
NZ_CP047135.1\|WP_159495825.1\|497795_500105_+\|DUF1631-family-protein	gnl\|CDD\|377917	pfam07793, DUF1631, Protein of unknown function (DUF1631). The members of this family are sequences derived from a group of hypothetical proteins expressed by certain bacterial species. The region concerned is approximately 440 amino acid residues in length.	0
NZ_CP047135.1\|WP_159495832.1\|505286_505838_+\|putative-Fe-S-cluster-assembly-protein-SufT	gnl\|CDD\|213809	TIGR03406, FeS_long_SufT, probable FeS assembly SUF system protein SufT. The function is unknown for this protein family, but members are found almost always in operons for the the SUF system of iron-sulfur cluster biosynthesis. The SUF system is present elsewhere on the chromosome for those few species where SUF genes are not adjacent. This family shares this property of association with the SUF system with a related family, TIGR02945. TIGR02945 consists largely of a DUF59 domain (see pfam01883), while this protein is about double the length, with a unique N-terminal domain and DUF59 C-terminal domain. A location immediately downstream of the cysteine desulfurase gene sufS in many contexts suggests the gene symbol sufT. Note that some other homologs of this family and of TIGR02945, but no actual members of this family, are found in operons associated with phenylacetic acid (or other ring-hydroxylating) degradation pathways. [Biosynthesis of cofactors, prosthetic groups, and carriers, Other].	1.50734e-101
NZ_CP047135.1\|WP_159495822.1\|494601_495393_-\|N-formylglutamate-amidohydrolase	gnl\|CDD\|226441	COG3931, COG3931, Predicted N-formylglutamate amidohydrolase [Amino acid transport and metabolism].	5.10138e-97
NZ_CP047135.1\|WP_159495823.1\|495933_496887_-\|exodeoxyribonuclease-IX	gnl\|CDD\|235591	PRK05755, PRK05755, DNA polymerase I; Provisional.	8.77841e-89
NZ_CP047135.1\|WP_159495819.1\|491361_492246_-\|LysR-family-transcriptional-regulator	gnl\|CDD\|176114	cd08422, PBP2_CrgA_like, The C-terminal substrate binding domain of LysR-type transcriptional regulator CrgA and its related homologs, contains the type 2 periplasmic binding domain. This CD includes the substrate binding domain of LysR-type transcriptional regulator (LTTR) CrgA and its related homologs. The LTTRs are acting as both auto-repressors and activators of target promoters, controlling operons involved in a wide variety of cellular processes such as amino acid biosynthesis, CO2 fixation, antibiotic resistance, degradation of aromatic compounds, nodule formation of nitrogen-fixing bacteria, and synthesis of virulence factors, to name a few. In contrast to the tetrameric form of other LTTRs, CrgA from Neisseria meningitides assembles into an octameric ring, which can bind up to four 63-bp DNA oligonucleotides. Phylogenetic cluster analysis further showed that the CrgA-like regulators form a subclass of the LTTRs that function as octamers. The CrgA is an auto-repressor of its own gene and activates the expression of the mdaB gene which coding for an NADPH-quinone reductase and that its action is increased by MBL (alpha-methylene-gamma-butyrolactone), an inducer of NADPH-quinone oxidoreductase. The structural topology of this substrate-binding domain is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	1.27748e-74
NZ_CP047135.1\|WP_159495826.1\|500217_501303_+\|NAD(P)(+)-transhydrogenase-(Re/Si-specific)-subunit-alpha	gnl\|CDD\|240629	cd05304, Rubrum_tdh, Rubrum transdehydrogenase NAD-binding and catalytic domains. Transhydrogenases found in bacterial and inner mitochondrial membranes link NAD(P)(H)-dependent redox reactions to proton translocation. The energy of the proton electrochemical gradient (delta-p), generated by the respiratory electron transport chain, is consumed by transhydrogenase in NAD(P)+ reduction. Transhydrogenase is likely involved in the regulation of the citric acid cycle. Rubrum transhydrogenase has 3 components, dI, dII, and dIII. dII spans the membrane while dI and dIII protrude on the cytoplasmic/matrix side. DI contains 2 domains in Rossmann-like folds, linked by a long alpha helix, and contains a NAD binding site. Two dI polypeptides (represented in this sub-family) spontaneously form a heterotrimer with dIII in the absence of dII. In the heterotrimer, both dI chains may bind NAD, but only one is well-ordered. dIII also binds a well-ordered NADP, but in a different orientation than a classical Rossmann domain.	0
NZ_CP047135.1\|WP_038690351.1\|509789_510275_-\|asparaginase	gnl\|CDD\|223330	COG0252, AnsB, L-asparaginase/archaeal Glu-tRNAGln amidotransferase subunit D [Amino acid transport and metabolism / Translation, ribosomal structure and biogenesis].	1.92739e-28
NZ_CP047135.1\|WP_159495818.1\|490384_491329_+\|prolyl-aminopeptidase	gnl\|CDD\|130316	TIGR01249, Putative_proline_iminopeptidase, proline iminopeptidase, Neisseria-type subfamily. This model represents one of two related families of proline iminopeptidase in the alpha/beta fold hydrolase family. The fine specificities of the various members, including both the range of short peptides from which proline can be removed and whether other amino acids such as alanine can be also removed, may vary among members.	1.94362e-176
NZ_CP047135.1\|WP_159495827.1\|501418_501844_-\|DUF3106-domain-containing-protein	gnl\|CDD\|378633	pfam11304, DUF3106, Protein of unknown function (DUF3106). Some members in this family of proteins are annotated as transmembrane proteins however this cannot be confirmed. Currently no function is known.	2.74954e-21
NZ_CP047135.1\|WP_159495834.1\|507446_509192_+\|S8-family-serine-peptidase	gnl\|CDD\|173820	cd07496, Peptidases_S8_13, Peptidase S8 family domain, uncharacterized subfamily 13. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.	4.85558e-125
NZ_CP047135.1\|WP_159495820.1\|492353_493784_+\|MFS-transporter	gnl\|CDD\|129794	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. [Cellular processes, Toxin production and resistance, Transport and binding proteins, Other].	1.89039e-47
NZ_CP047135.1\|WP_159495824.1\|496888_497464_-\|nitroreductase	gnl\|CDD\|380312	cd02135, YdjA-like, nitroreductase family protein similar to Escherichia coli YdjA. A subfamily of the nitroreductase family containing uncharacterized proteins that are similar to nitroreductase YdjA from Escherichia coli. Nitroreductase catalyzes the reduction of nitroaromatic compounds such as nitrotoluenes, nitrofurans and nitroimidazoles. This process requires NAD(P)H as electron donor in an obligatory two-electron transfer and uses FMN as cofactor. The enzyme is typically a homodimer. Members of this family are also called NADH dehydrogenase, oxygen-insensitive NAD(P)H nitrogenase or dihydropteridine reductase.	5.29095e-53
NZ_CP047135.1\|WP_128097436.1\|495385_495937_-\|NUDIX-hydrolase	gnl\|CDD\|239516	cd03424, ADPRase_NUDT5, ADP-ribose pyrophosphatase (ADPRase) catalyzes the hydrolysis of ADP-ribose and a variety of additional ADP-sugar conjugates to AMP and ribose-5-phosphate. Like other members of the Nudix hydrolase superfamily, it requires a divalent cation, such as Mg2+, for its activity. It also contains a highly conserved 23-residue Nudix motif (GX5EX7REUXEEXGU, where U = I, L or V) which functions as a metal binding site/catalytic site. In addition to the Nudix motif, there are additional conserved amino acid residues, distal from the signature sequence, that correlate with substrate specificity. In humans, there are four distinct ADPRase activities, three putative cytosolic enzymes (ADPRase-I, -II, and -Mn) and a single mitochondrial enzyme (ADPRase-m). Human ADPRase-II is also referred to as NUDT5. It lacks the N-terminal target sequence unique to mitochondrial ADPRase. The different cytosolic types are distinguished by their specificities for substrate and specific requirement for metal ions. NUDT5 forms a homodimer.	5.13078e-38
NZ_CP047135.1\|WP_159495829.1\|502178_502793_-\|RNA-polymerase-sigma-factor	gnl\|CDD\|236367	PRK09047, PRK09047, RNA polymerase factor sigma-70; Validated.	4.78316e-63
NZ_CP047135.1\|WP_159495830.1\|503176_504631_+\|NAD(P)(+)-transhydrogenase-(Re/Si-specific)-subunit-beta	gnl\|CDD\|376743	pfam02233, PNTB, NAD(P) transhydrogenase beta subunit. This family corresponds to the beta subunit of NADP transhydrogenase in prokaryotes, and either the protein N- or C terminal in eukaryotes. The domain is often found in conjunction with pfam01262. Pyridine nucleotide transhydrogenase catalyzes the reduction of NAD+ to NADPH. A complete loss of activity occurs upon mutation of Gly314 in E. coli.	0

>NZ_CP047135.1|WP_159495826.1|500217_501303_+|NAD(P)(+)-transhydrogenase-(Re/Si-specific)-subunit-alpha
MAVEVVVVTERAPGERRVAMTPETARKLAALGATVWFEPGAGQAAGFPDQAYIDVGAQPADDTRLGTADIVLCVQPPDNARLGQLKPGASLVGMLHPQADAERAGLIQSRGLQAFPLERLPRTTRAQSMDVLSSQAGMAGYKATLIAAQLAPRFFPMLTTAAGTIRPSRVLVVGAGVAGLQAIATARRLGAQVEGFDVRPETREQIESLGGKFLDLGVSAVGEGGYARPLTDEERAEQQRRLGEHLRLVDVVICTAAVPGRPAPKIVSTAMVQGMKPGSVIVDLAAETGGNCEATRPGETIALGGVTVDGPLDLASRGAVHASEMYARNLYNFVALFLKDGAIQFDWDDELLAKTRWVAAG
>NZ_CP047135.1|WP_159495825.1|497795_500105_+|DUF1631-family-protein
MIATPTPLGQPGRHPALLKLAREAALPALTESFATVLARFDDVLFDRAGTAGASQLLFLDGMRELRRRREEIVAGFRNHLAQAWDALERGEPVSAEATLAGQIEDGLSLVPEHVLESRLAVRNFATVLLRDWKPVLARLDRRLGWIAGGLELNADSNPISPEHIGVAIHEAFADCELAPEVRLVLIKLCERDLHAPIGKRYEALDEQLAAAGVMPQMAAPRRPAPRPPSPRHELDALVDALDQDGQIGNDDAAAPAWARRFADRWAESRGRMQSAGASQAAGESGDTLSGNQGMLLEALHELLQQTRHVREDATSAASVAVGQQRPLSQREMMSVLSLLQATPSATLRAAIGEDGESLAQRLKSEVLSGATRLGVDPSQARLDPQDEDAIDLVGMLFDVMLDERDLEGRSRELIGRLVVPFVKVAMLDRRMFVQKTHPARKLLNSLAEACEGNTGESQAERVLMGKVEEIIERLVAEFNENLAIFLTLEEEFRDFLAQHRRRIEIAERRAAETQRGQEKLEMARSRSAAELDRRIADATLPQAIGEFLRQPWQHHLTLTVLREGEDGASVGEALALADGILEEVAEARRQIVGKPWLQAWHPALRKVFASVGVHADAATGAIDALHDTLQAIAESRPELERALPELPQVALPTPPVQESAPVELGGKVDVTDFDNADADRFRGLEIGSWLDFVDKDGKVQAGKLSWVSPISSRLLFVNRRGVRFCVASPEELAVMVRLGRLRAHIDDGAFDSAMQGVIDRLDNKNATVH
>NZ_CP047135.1|WP_159495824.1|496888_497464_-|nitroreductase
MSESPALQALDARRSVPAKQLGEPGPDPDTLLRMLASAVRVPDHGKLVPYRFLRIAGDARHSLGAFLAERSQQRDPQVAQAQLDKDRQRFSHAPVIITVVASPRPSPKVPEQEQLMTAGCVCFALLQAAQALGYGAQWLTAWMAFDPAVHAHLGLAEGERIAGFIHIGTPKTPAPERDRPDPAALLQDWVG
>NZ_CP047135.1|WP_159495823.1|495933_496887_-|exodeoxyribonuclease-IX
MDPLSAAPLAPRPPLYLVDASLYVFRAWHSMPDEFQDQQGWPTNAVHGFARFLLDLIERERPRHIAIAFDEALDSCFRHRLYAAYKANRDPAPDALRRQFAHCKALCMALGLAVLAHHEYEADDLIGSALHARRDAGMRGVIISADKDLSQLLYEHDEQWDYARNQRWGMAGVKARHGVHAHQIADYLALCGDAVDNIPGVTGVGAKSAAVLLAHFGSLDVLYERLDEVPFLRLRGAAQMAVRLREQREHALLWRQLTTIALDAPLDCADADFRRGSADPQMLQGLCDALRFGPLTRRRLFSAAGLPDSPSIASEFA
>NZ_CP047135.1|WP_128097436.1|495385_495937_-|NUDIX-hydrolase
MSPNTQAPKVVYEGKYQRMVVRGTWEYSERTHAGGLAAIIIAVTPEDNVLFVEQFRVPLQANTIEMPAGLVGDIDAGESIEVSAVRELEEETGWTAEHAEVLMIGPTSSGASSEKIAFVRATGLRKVGDGGGDASENITVHEVPRARAAAWLVEKIGQGYELDAKLWAGLWMIEHHLDGTPRG
>NZ_CP047135.1|WP_159495822.1|494601_495393_-|N-formylglutamate-amidohydrolase
MADSFAPITSAALLGPSDPAPFTVHQAQGRSPFLLIADHAGQQVPAALGNLGLPASELDRHIGWDIGIAGVTVELARLLDAWAITQTYSRLVIDCNRPSGAPGRFAPLSDGTVVPGNQGLDDAAQDARVQSIFAPYHGRIAAELDARAAAGTPTVLIAMHSFTPSMQGVARPWHAGVLYQRDARFAHALMHALQAEGDLVVGDNQPYAVSDATDYAIPVHAEARGLAHVELEIRQDLIADTAGQQAWARRLARLLQALAPRFG
>NZ_CP047135.1|WP_159495821.1|493847_494510_+|hypothetical-protein
MTALLTLTQALEAIAACSDDGQVWERHAWVHASDGDARQARFWLAGHDAADAEDAEGVHPFAAAHGLRHYLEGATFADVLSVQKRQQPFSTVDDYARALDHYSEEDAFLERPGLSMAYGDAPQEELARARTERLSPGLYAAFDLVLETVEPAQRKAAASLVAEIKALSVGEALAQVRALPLAVACNIDRAASAALQARFAAIGLPLQVTGYRSFPWQPIG
>NZ_CP047135.1|WP_159495820.1|492353_493784_+|MFS-transporter
MTHSAHSFPPRLALTLLAMAQLIIALDATIIFVALHEMGVQLQINAQQLQWIVSGYTVAFGGCLLLGGRAADLLGRRRIYRLGMGLFALASLVGGFSTSAWLLIAARAVQGIGAALLFPATLALINTLYAEGAPRNRALAIWSMASAGGLALGTLLGGVLTQSFGWSSVLLVIVPFASACALLGGWWLPRDPAPQAGRSFDLAGCFTVTLGGSLLVTTLVQGPEWGWLAPRTLGCLVLSALLLAAFVQIEQRSRDPLMQFSLLRLRSLRAAMLLTLLFMSSFGVQYYFLALYFQDGYGWSALQAGLAFLPPTLVCTFGIKITERMLTRRSPRQVLALGMAAGAVGITAVAVALPYGATYWALLPGIVVLSVGQGMTWTAMWIVAGQGVPAAQQGVASGMAATAQQIGGALGLAVLVMLANAGRGVAAAGTSPEALHGLVNAQYGAAVFALLGVGVAVWLRPQPDDAALPAACATER
>NZ_CP047135.1|WP_159495819.1|491361_492246_-|LysR-family-transcriptional-regulator
MDLNAVRMLVQVAEARSFTLAAGQLGISQSGLSRAISRLEGTLGVRLLQRNTRNVSLTPDGRQFVEHCAPLLSGLEEAERRLGDRPSTPSGVLKLTAPSMFGRKVLVPLAGQLMATHPQLQFELVLNDRLVDLVEEGFDAALRTGPISDVRMVARPLRPLHWVTVASPAYIAQHGQPATVDALQDHTCLAVRNLRSGRLVDWQFREDDRLREFTPLARMVFDSGDPLVEGALAGVGIVQVMDFAVADALAAGRLQRVLQPFEGRSRALSLVYPPSRQASPKMKVLADALLAGNW
>NZ_CP047135.1|WP_159495818.1|490384_491329_+|prolyl-aminopeptidase
MRTLYPALTPYDVGTLKVDDRHTLYFEQCGNPDGKPVVMLHGGPGGGCSEKMRQFHDPAKYRINLFDQRGAGRSTPHADLVDNTTWDLVADIEKLREHLKVERWQVFGGSWGSTLALAYAETHPQRVTELVLRGIFMLRRWELEWFYQEGANRLFPDAWEHYLTPIPEVERHDLISAFHRRLTSDDEATRLAAAKAWSVWEGATSFLHVDDEFVNSHQDPQFALAFARIENHYFVNGGFFEVEEQLLRDVHRIADIPGVIVHGRYDVVCPLQNAWELHKAWPKSTLEISPASGHSAFEAENVDALVRATDRFAG
>NZ_CP047135.1|WP_159495827.1|501418_501844_-|DUF3106-domain-containing-protein
MTPRLILALALLSTSAASGTQTPPLPEWDRLTPQQREALIAPVRDRWNDAPPPQRERMLEHGQRWQGMTPEQRELARRGRHRFENMSPEQREQARALFAQMRELSPAQRDALRERWSKMTPEQRQDWLKANPVKAMPPPKR
>NZ_CP047135.1|WP_159495828.1|501846_502182_-|hypothetical-protein
MSRPVTPPLHDDAALHALHAQALQQVSPATLARLRNARHAAAPRRSRAHGWWMATACSAVAALALGYSFTANPPSAPATPTVASAVDDSSDVLDENPDLYVWLGTTDLAME
>NZ_CP047135.1|WP_159495829.1|502178_502793_-|RNA-polymerase-sigma-factor
MPPRCVVTGTPLRERYPVLVSPTLQPLTTEADAALPVSLDAFLAGIGPRAFRFAEAGLRQRDDALDAVQDSMLRMLSYRDKPAAEWAPLFWSILRRRVVDLQRRRGFRLRFWRSSDEAGSEHDIDWADHAPGPAQAHEQREQYAQLVRALRELPARQREAFTLRVLQQLDGATTAAAMGCSEGAVKTHLSRARQALQQHLEIAL
>NZ_CP047135.1|WP_019182396.1|502871_503180_+|NAD(P)-transhydrogenase-subunit-alpha
MSDGFVALYIFMLAAIAGHVIISRVPVILHTPLMSGSNFIHGIVLIGAMVVLGHAQTPLEKIIGFIAVVLGAGNAAGGYVVTERMLDMFKPSAKRDAGEKAP
>NZ_CP047135.1|WP_159495830.1|503176_504631_+|NAD(P)(+)-transhydrogenase-(Re/Si-specific)-subunit-beta
MNVSTAQLLQWLVQVSYLVAATLFLLGLQRMASPMTARSGIRWAGLGMLIATVATFFLPDLHNIPLILAAVTIGTGVAWWSAKRVAITDMPQMVALYNGMGGGSAAAIGAVELLRFSFLANRDTTHWSEQALADLAARQPSATVLALAIIGSAIGAVSLSGSIIAWAKLDGRLDRRVTFPGQQAFNLLVALAMVVLGAWAAISLSPVAIISFFVVALALGVLMTLPIGGADMPVVISLYNAFTGLAVAFEGYVLGNEALIIAGMMVGAAGILLTRLMAKAMNRPISGVLFSNFGGGGVAQEISGAQKPIEASDVAAMLAFAERVVIVPGYGMAVAQAQHKVWELAQRLIDRGIKVKFAIHPVAGRMPGHMNVLLAEAGVPYDLIADMDDINPEFPNTDVGLVIGANDVVNPVARTDPASPIYGMPILDVVNARNVVVIKRGKGTGFAGIENALFYADNARMLYGDGAGAASALVSELKALDGGH
>NZ_CP047135.1|WP_159495831.1|504748_505168_-|hypothetical-protein
MSPTSVPARSRHWLWPPMLLLGVVTAMLAWLFIALLSGRQAGWMAVLAALDIAFMLRLGTFRAGPARVVVTLLATLLVALAANWGIASAYLGGSMGLNPWDSSLRMGPFMAWTLIGLANGAAEWLWLGVALVIGWWVAK
>NZ_CP047135.1|WP_159495832.1|505286_505838_+|putative-Fe-S-cluster-assembly-protein-SufT
MYSRSSEPVHFERDCEAVMVPQGETVTLPAGSYGYITQALGGSYTVFVEGNLFRIAGKDGDAIGKEPAPALELPDNASDDEVEKLVWQQLRTCFDPEIPFNIVDLGLVYEVDLKHLDDGRREIDVTMTLTAPGCGMGDILVDDVRSKLEMIPTVAQADVELVFDPPWGRHMMSEAARLETGML
>NZ_CP047135.1|WP_159495833.1|505895_506993_+|branched-chain-amino-acid-aminotransferase
MSQSSVSFNTTRSATPRSSEERERILAAPGFGLHFTDHMVEVRWDKDTGWHNASVRPYGPLQLDPAAAVLHYGQEIFEGIKAYRHADGSIWTFRPDANGRRLQRSAQRLALPELPVDIFVESLKQLIAVDASWVPSADESSLYFRPFMIGDEAFLGVRGAHKAGYYVIASPAGPYFAKGVAPVSIWLSTEYARAAKGGTGAAKCGGNYAASLLPQQKAQAQGCSQVLFLDPVEGKYLEELGGMNVFLVYKDGTLVTPALSGSILEGITRESILQLARDRGMKVEERKVTIDEWKQGVASGEIAEVFACGTAAVVTPIGQLKGEGFSVGDINAPAGEVTMSLRKELTDIQYGRLPDRHGWLVRLDA
>NZ_CP047135.1|WP_159495834.1|507446_509192_+|S8-family-serine-peptidase
MSHDSQPRLRQRALVVLGASVLSTLLLAAPAFAGDVQLSGLSSAPTHQRFIVKYKDGANLVATPTALASSLKAAASAVPAAQGRALGLQKLRQLAIGPTVVKADRPLDAAESELLMRRLAADPNVEYVEVDQLMHATLVPNDARLSEQWGFGTSNASINVRPAWDKATGTGVVVAVIDTGITNHPDLNANILPGYDFISDAAMARDGGGRDNNPNDEGDWYAANECGSGIPASNSSWHGTHVAGTIAAVTNNSTGVAGTAFNAKVVPVRVLGKCGGYTSDIADAIVWASGGTVSGVPANANPAEVINMSLGGGGTCSTTYQNAINGAVSRGTTVVVAAGNSNTNVSSSVPANCANVIAVAATTSAGARASFSNYGAGIDISAPGQAILSTLNSGTTVPGTASYASYNGTSMAAPHVAGVVALVQSVAPTALTPAAIETLLKNTARALPGACSGGCGAGIVDADAAVTAALGGTNPNPGTGTVLQNNVPVTGLGAASGASLSYTVVVPSGRSQLKVSIAGGSGDADLYVRSGSAPTDTVYNCRPYLSGNNETCTITSPAAGTWHVRVKGYSTFSGVTLTAQY
>NZ_CP047135.1|WP_038690351.1|509789_510275_-|asparaginase
MDELLIITTGGTIDKIYFDDKSDYQIGDPQIGMILRELGVTFRFNVIPILRKDSLHITDEDRELIRATIAAQPTRHVLVTHGTDSMVQTGQVLRSIADKTIVMTGALSPARFRGSDAEFNIGCAIGAVQSLASGVYIAMNGRIWNPEHVRKNVAANRFEEA

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Crispr_ID: NZ_CP047135_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP047135_3

764878-765018

Orphan

Consensus_repeat	Method
GTAGGCACCGACCGTTGGTCGGTGC	CRISPRCasFinder

2 spacers

The CRISPR arrays of NZ_CP047135_3

>merge|NZ_CP047135|3|764878-765018|CRISPRCasFinder
ATGGGTACCGACCAACGGTCGGTACCTACCGGTGTCTGCTGCGCACCGATCATCCAGTAGGCACCGACCGTTGGTCGGTGCACGCGCCCATCAACGCCGCGGCATGGACCCCCCGGGTAGGCACCGACCGTTGGTCGGTGC

>NZ_CP047135|3|3|764878-765018|CRISPRCasFinder
ATGGGTACCGACCAACGGTCGGTAC	CTACCGGTGTCTGCTGCGCACCGATCATCCA
GTAGGCACCGACCGTTGGTCGGTGC	ACGCGCCCATCAACGCCGCGGCATGGACCCCCCGG
GTAGGCACCGACCGTTGGTCGGTGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP047135.1\|WP_159495991.1\|759481_760744_-\|Fe-S-cluster-assembly-protein-SufD	unknown	unknown	gnl\|CDD\|223791
NZ_CP047135.1\|WP_159495999.1\|773254_774664_+\|UDP-N-acetylmuramoyl-L-alanine--D-glutamate-ligase	unknown	unknown	gnl\|CDD\|179872
NZ_CP047135.1\|WP_038689895.1\|763694_764162_+\|SET-domain-containing-protein-lysine-N-methyltransferase	unknown	unknown	gnl\|CDD\|380916
NZ_CP047135.1\|WP_159495990.1\|758228_759485_-\|SufS-family-cysteine-desulfurase	unknown	unknown	gnl\|CDD\|131034
NZ_CP047135.1\|WP_159495989.1\|757739_758156_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP047135.1\|WP_159495988.1\|756871_757633_-\|TonB-family-protein	unknown	unknown	gnl\|CDD\|223880
NZ_CP047135.1\|WP_159495996.1\|768191_769067_-\|PhzF-family-phenazine-biosynthesis-isomerase	unknown	unknown	gnl\|CDD\|223461
NZ_CP047135.1\|WP_159495998.1\|771921_773274_+\|endonuclease-domain-containing-protein	unknown	unknown	unknown
NZ_CP047135.1\|WP_159496000.1\|774720_775320_-\|SMI1/KNR4-family-protein	unknown	unknown	gnl\|CDD\|378155
NZ_CP047135.1\|WP_038689886.1\|766901_767300_-\|DNA-binding-protein	unknown	unknown	gnl\|CDD\|259856
NZ_CP047135.1\|WP_159495987.1\|756271_756808_-\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|366181
NZ_CP047135.1\|WP_159495992.1\|760743_761508_-\|Fe-S-cluster-assembly-ATPase-SufC	unknown	unknown	gnl\|CDD\|273907
NZ_CP047135.1\|WP_159495993.1\|764285_764828_+\|DJ-1/PfpI/YhbO-family-deglycase/protease	unknown	unknown	gnl\|CDD\|153228
NZ_CP047135.1\|WP_038689897.1\|763066_763519_-\|SUF-system-Fe-S-cluster-assembly-regulator	unknown	unknown	gnl\|CDD\|131989
NZ_CP047135.1\|WP_128095580.1\|766317_766626_-\|DUF3861-family-protein	unknown	unknown	gnl\|CDD\|372414
NZ_CP047135.1\|WP_128095581.1\|767676_768108_+\|OsmC-family-protein	unknown	unknown	gnl\|CDD\|274650
NZ_CP047135.1\|WP_159495997.1\|769247_771851_+\|bifunctional-aspartate-kinase/diaminopimelate-decarboxylase	unknown	unknown	gnl\|CDD\|236358
NZ_CP047135.1\|WP_159495994.1\|765027_765624_-\|DUF1439-domain-containing-protein	unknown	unknown	gnl\|CDD\|377799
NZ_CP047135.1\|WP_159495995.1\|765722_766268_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP047135.1\|WP_128095585.1\|761574_763050_-\|Fe-S-cluster-assembly-protein-SufB	unknown	unknown	gnl\|CDD\|236990

Protein	Function_ID	Function_description	E-value
NZ_CP047135.1\|WP_159495991.1\|759481_760744_-\|Fe-S-cluster-assembly-protein-SufD	gnl\|CDD\|223791	COG0719, SufB, Cysteine desulfurase activator SufB [Posttranslational modification, protein turnover, chaperones].	5.33883e-94
NZ_CP047135.1\|WP_038689895.1\|763694_764162_+\|SET-domain-containing-protein-lysine-N-methyltransferase	gnl\|CDD\|380916	cd10518, SET_SETD1-like, SET domain (including post-SET domain) found in SET domain-containing proteins (SETD1A/SETD1B), histone-lysine N-methyltransferases (KMT2A/KMT2B/KMT2C/KMT2D) and similar proteins. This family includes SET domain-containing protein 1A (SETD1A), 1B (SETD1B), as well as histone-lysine N-methyltransferase 2A (KMT2A), 2B (KMT2B), 2C (KMT2C), 2D (KMT2D). These proteins are histone-lysine N-methyltransferases (EC 2.1.1.43) that specifically methylate 'Lys-4' of histone H3 (H3K4me).	3.63891e-36
NZ_CP047135.1\|WP_159495990.1\|758228_759485_-\|SufS-family-cysteine-desulfurase	gnl\|CDD\|131034	TIGR01979, Probable_cysteine_desulfurase, cysteine desulfurases, SufSfamily. This model represents a subfamily of NifS-related cysteine desulfurases involved in FeS cluster formation needed for nitrogen fixation among other vital functions. Many cysteine desulfurases are also active as selenocysteine lyase and/or cysteine sulfinate desulfinase. This subfamily is associated with the six-gene SUF system described in E. coli and Erwinia as an FeS cluster formation system during oxidative stress. The active site Cys is this subfamily resembles GHHC with one or both His conserved. [Biosynthesis of cofactors, prosthetic groups, and carriers, Other].	0
NZ_CP047135.1\|WP_159495988.1\|756871_757633_-\|TonB-family-protein	gnl\|CDD\|223880	COG0810, TonB, Periplasmic protein TonB, links inner and outer membranes [Cell envelope biogenesis, outer membrane].	3.6769e-14
NZ_CP047135.1\|WP_159495996.1\|768191_769067_-\|PhzF-family-phenazine-biosynthesis-isomerase	gnl\|CDD\|223461	COG0384, COG0384, Predicted epimerase, PhzC/PhzF homolog [General function prediction only].	8.73723e-62
NZ_CP047135.1\|WP_159495999.1\|773254_774664_+\|UDP-N-acetylmuramoyl-L-alanine--D-glutamate-ligase	gnl\|CDD\|179872	PRK04690, murD, UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase.	0
NZ_CP047135.1\|WP_038689886.1\|766901_767300_-\|DNA-binding-protein	gnl\|CDD\|259856	cd13834, HU_like, DNA-binding proteins similar to HU domains. This subfamily consists of DNA-binding proteins similar to HU domains. HU is a conserved nucleoid-associated protein (NAP) which binds non-specifically to duplex DNA with a particular preference for targeting nicked and bent DNA. It is highly basic and contributes to chromosomal compaction and maintenance of negative supercoiling, thus often referred to as histone-like protein. HU can induce DNA bends, condense DNA in a fiber and also interact with single stranded DNA. It contains two homologous subunits, alpha and beta, typically forming homodimers (alpha-alpha and beta-beta), except in E. coli and other enterobacteria, which form heterodimers (alpha-beta).	4.27426e-29
NZ_CP047135.1\|WP_159495987.1\|756271_756808_-\|GNAT-family-N-acetyltransferase	gnl\|CDD\|366181	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family. This family contains proteins with N-acetyltransferase functions such as Elp3-related proteins.	3.91344e-12
NZ_CP047135.1\|WP_159495992.1\|760743_761508_-\|Fe-S-cluster-assembly-ATPase-SufC	gnl\|CDD\|273907	TIGR01978, Probable_ATP-dependent_transporter_SufC, FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic () or associated with the membrane (). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA. [Biosynthesis of cofactors, prosthetic groups, and carriers, Other].	2.06212e-144
NZ_CP047135.1\|WP_159495993.1\|764285_764828_+\|DJ-1/PfpI/YhbO-family-deglycase/protease	gnl\|CDD\|153228	cd03134, GATase1_PfpI_like, A type 1 glutamine amidotransferase (GATase1)-like domain found in PfpI from Pyrococcus furiosus. A type 1 glutamine amidotransferase (GATase1)-like domain found in PfpI from Pyrococcus furiosus. This group includes proteins similar to PfpI from P. furiosus. and PH1704 from Pyrococcus horikoshii. These enzymes are ATP-independent intracellular proteases and may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For PH1704, it is believed that this Cys together with a different His in one monomer and Glu (from an adjacent monomer) forms a different catalytic triad from the typical GATase1domain. PfpI is homooligomeric. Protease activity is only found for oligomeric forms of PH1704.	1.49279e-81
NZ_CP047135.1\|WP_038689897.1\|763066_763519_-\|SUF-system-Fe-S-cluster-assembly-regulator	gnl\|CDD\|131989	TIGR02944, conserved_hypothetical_protein, FeS assembly SUF system regulator, gammaproteobacterial. The SUF system is an oxygen-resistant iron-sulfur cluster assembly system found in both aerobes and facultative anaerobes. Its presence appears to be a marker of oxygen tolerance; strict anaerobes and microaerophiles tend to have different FeS cluster biosynthesis systems. Members of this protein family belong to the rrf2 family of transcriptional regulators and are found, typically, as the first gene of a SUF operon. It is found only in a subset of genomes that encode the SUF system, including the genus Xanthomonas. The conserved location suggests an autoregulatory role. [Biosynthesis of cofactors, prosthetic groups, and carriers, Other, Regulatory functions, DNA interactions].	9.96516e-58
NZ_CP047135.1\|WP_128095580.1\|766317_766626_-\|DUF3861-family-protein	gnl\|CDD\|372414	pfam12977, DUF3861, Domain of Unknown Function with PDB structure (DUF3861). The 3cjl structure is likely a representative of a new fold with some resemblance to 3-helical bundle folds such as the serum albumin-like fold of SCOP. No significant hits reported by a Dali search. This protein is the first structural representative of a small (about 60 proteins) family of proteins that are found among proteo- and enterobacteria (REF http://www.topsan.org/Proteins/JCSG/3CJL).	4.79262e-16
NZ_CP047135.1\|WP_128095581.1\|767676_768108_+\|OsmC-family-protein	gnl\|CDD\|274650	TIGR03562, osmo_induc_OsmC, peroxiredoxin, OsmC subfamily. pfam02566, OsmC-like protein, contains several deeply split clades of homologous proteins. The clade modeled here includes the protein OsmC, or osmotically induced protein C. The member from Thermus thermophilus was shown to have hydroperoxide peroxidase activity. In many species, this protein is induced by stress and helps resist oxidative stress. [Cellular processes, Detoxification].	1.04903e-69
NZ_CP047135.1\|WP_159495997.1\|769247_771851_+\|bifunctional-aspartate-kinase/diaminopimelate-decarboxylase	gnl\|CDD\|236358	PRK08961, PRK08961, bifunctional aspartate kinase/diaminopimelate decarboxylase.	0
NZ_CP047135.1\|WP_159495994.1\|765027_765624_-\|DUF1439-domain-containing-protein	gnl\|CDD\|377799	pfam07273, DUF1439, Protein of unknown function (DUF1439). This family consists of several hypothetical bacterial proteins of around 190 residues in length. Several members of this family are annotated as being putative lipoproteins and are often known as YceB. The function of this family is unknown.	0.000109574
NZ_CP047135.1\|WP_159496000.1\|774720_775320_-\|SMI1/KNR4-family-protein	gnl\|CDD\|378155	pfam09346, SMI1_KNR4, SMI1 / KNR4 family (SUKH-1). Proteins in this family are involved in the regulation of 1,3-beta-glucan synthase activity and cell-wall formation. Genome contextual information showed that SMI1 are primary immunity proteins in bacterial toxin systems.	5.63291e-07
NZ_CP047135.1\|WP_128095585.1\|761574_763050_-\|Fe-S-cluster-assembly-protein-SufB	gnl\|CDD\|236990	PRK11814, PRK11814, cysteine desulfurase activator complex subunit SufB; Provisional.	0

>NZ_CP047135.1|WP_159495993.1|764285_764828_+|DJ-1/PfpI/YhbO-family-deglycase/protease
MAHALDGKKVAILATDGFEQSELQEPKRLLETWGATVTVIAPGDASQIRGWKGKDWGESVAVDQALAAAKPDTYHALVLPGGVINPDKLRIDTQAVDFIKAFGAAGKPVAAICHGPWLLVESGLAKGHAVTSWPSLKTDLTNAGAQWRDAEVVVDGNLITSRKPDDIPAFADAVAKALAG
>NZ_CP047135.1|WP_038689895.1|763694_764162_+|SET-domain-containing-protein-lysine-N-methyltransferase
MPKKIQARKSSIHGNGVFALAPIKQGERVIQYKGLLRSHADVDADDTGDVESGHTFLFTLNDDYVIDANYKGNDARWLNHSCDPNCEAVIEEAEGDNRREDKVFIEAIKDIKPGDELTYNYGITLAERHTARLKKIWECRCGSKKCTGTMLQPKR
>NZ_CP047135.1|WP_038689897.1|763066_763519_-|SUF-system-Fe-S-cluster-assembly-regulator
MLRVTKLTDYATVVLTVLAARPGEVLSATELAEFASLEPPTVSKLLKPLAQAGLVEGLRGVRGGYRLTRPAEQITLFEIVEAMEGPLGLTECAHEHSQCGREMQCGARSSWRLINDVVSEALRAVSLAQILPPLPLVDASRRVIAADVVS
>NZ_CP047135.1|WP_128095585.1|761574_763050_-|Fe-S-cluster-assembly-protein-SufB
MATDILDTVATGDTPNREIHEQLGRKYSAGFITDIESDSLPPGLDEDTIRALSAKKDEPEWMTQWRLDAYRHFLTMPMPNWAKLQIAPIDLQSLSYYSAPKGPKYASLDDVPKELLDTYDKLGVPLHERAKLAGVAVDAVFDSVSVGTTFRKELAEKGVIFCSMSEAIKEHPELVKQYLGTVVPVGDNYFAALNSAVFSDGSFVFIPKGVRCPMELSTYFRINAGHTGQFERTLIICEDKAYVSYLEGCTAPMRDENQLHAAVVELVALEDAEIKYSTVQNWYPGDENGVGGIYNFVTKRAECRGARSKVTWTQVETGSAITWKYPSCVLLGDDSVGEFHSVALTHHRQQADTGTKMIHIGKRTKSKIVSKGISAGRGQNTYRGLVKVDRNADGARNYTQCDSLLIGKTSGAHTFPYIEVKNPSATVEHEATTSKISDDQLFYCRARGIDQENAVSMIVDGFCKQVFRELPMEFAVEAKKLLEVSLEGSVG
>NZ_CP047135.1|WP_159495992.1|760743_761508_-|Fe-S-cluster-assembly-ATPase-SufC
MLKIDNLHARIGDKEILKGLSLDVKPGQVHAIMGPNGAGKSTLGNVLAGRDGYDVSEGSVQFEGRDLLELAPEERAAAGLFLAFQYPVEIPGVNNTYFLRAALNAQRKARGEEELDSMQFLKLVRQKLAVLHLKDELLHRGVNEGFSGGEKKRNEIFQLAVLEPKLAILDETDSGLDIDALKSVADGVNALRSPDRSFIVITHYQRLLDYIKPDVVHVLADGKIVQTGGPELALELEAHGYHFLKDRVVPEAAV
>NZ_CP047135.1|WP_159495991.1|759481_760744_-|Fe-S-cluster-assembly-protein-SufD
MSALLDSLASGFCGSDARRAELDAALQAGLPGPRTEAWKYTSLRQLERRSFSPAPLAATDVDAALLADIPSPRLVFVNGRPSHALSDVAALPAGIQLQTLSSALSAGDDALRFLGRRFERSDEVFARLNAALADEGVVVRVEDGAQVELPLQLVFISVAGETDLSWHHRHLIELRAGAALGVVEHHLHVGDAAHLGNTLVHVHLAQDAVLSHARVQADSGRATTLLRTDAVLARNAQYRRIDLELGAALSRHELNVRLEGDSAQLTANGVLLGNGRRHIDTRLGIEHIARDTSSEMVWRGVAANRSRVVFHGGIHIRAGADGTDANLSNKNLLLSADAEIDTQPTLVIDADEVKAAHGATVGQLDANALFYLRSRGLAADQAQQLLSAAFCHEPLNALDARLTEQLRRQLDIALAQAGVA
>NZ_CP047135.1|WP_159495990.1|758228_759485_-|SufS-family-cysteine-desulfurase
MNLSTARPAPDTAVAPDWDRARLDFPLLMREVHGKPLVYFDNANTGQKPVQVIGAVDEFYRRYNANVSRAVHALGTEATDAYEGARTKLARFLNVRASELVLCSGTTFALNLVAYSWALPRLKAGDVILVSRMEHHANIVPWQLVAERTGATIRVAEITPDGALDLDALRRAMTAEVKLLAVAHVSNVLGTVNPVREICREARKRGIVTVVDGSQAVPHRKVDVAAIGCDFYAITGHKMCGPTGTGALWARREHLDAMPPFIGGGEMIKEVSFEGTVFNDAPHKFEAGTPNIAGFIGLGVAVDYLESLGLDHVETRETELLAHFNEELGKIDGLRIFGTTPDKAAVVSFLIEGAHSHDLATLLDLEGVAVRSGQHCAHPLLQYYGVAAACRASLAFYNTHDEVERFIVALNKVRKLLG
>NZ_CP047135.1|WP_159495989.1|757739_758156_+|hypothetical-protein
MNVSGAVMAVVLAVQGAGAPVDKGLDLAGTYGNVCVHPDSGDMLGIELFFPGAADPGHARLWHYEGAALAPERLVMGTRGAAVYLYASDGTAVMVVRRQGAALQVTHLAGSQASSGGARETLVAVTRRGGDGTRPVCR
>NZ_CP047135.1|WP_159495988.1|756871_757633_-|TonB-family-protein
MPSPLLCTGQPPVGLPWSPRPPAFVERHARALAAGITVLAHVGLFVALLWRQAYSPADLPPPPAERTQLILLPPRAPEVPLEEIVAPTPSSAAAVLKQKPEPPRPLPQTPPRATANWVIPPPTPPQPTTDSLAPQQQEASVAAAPPSPPLPAGPSEATPGRDSWEGRVMARLERFRRYPNAARARRQEGIAQLRVSVGRDGSLLALSLEATSGFPLLDQAALDTFRRAAPLPKVPEDRQAPVELSFPVEFFMR
>NZ_CP047135.1|WP_159495987.1|756271_756808_-|GNAT-family-N-acetyltransferase
MSTLTFRAATAADIPALIALVTSAYRGDASRAGWTTEADLLDGARIDAQGLQADLAKPRSTILLAEREGQLAACAHVADDNGTGYFGMFSVAPTQQGGGIGKQMMDAAEAHAAREWGVPVMQMTVIDVREELIAFYERRGYARTGIKKPFPYGDERFGIPKRDDLRFEILEKPLVVSA
>NZ_CP047135.1|WP_159495994.1|765027_765624_-|DUF1439-domain-containing-protein
MNARPLLSRIAACTVLIAAAVGAQAAPSVSGRQLSVGASDVQQYLDGSFPRTQDALGGLIAMTMSHPQLALPQGNRLDLGFDIAMATAGSAPAALGKVKLSSGLRYDAQTQGFHLDQPTVDDFTPATNGGRLDSRTRSLLNAWLTDYARREPIYKIDPTVASVLGALQVQSAQVENGKLVVTFNQDLGKLVPAGMLGK
>NZ_CP047135.1|WP_159495995.1|765722_766268_-|hypothetical-protein
MRRAVILLPLLLGGCSCERHPAADAPGAAATAATAGAEATGSTNAATVAPLAPAPLSAVAAGAEDEGIVVRHYLNALARGDHAAADAFWSGGRTASHADDAVLRQLLSQPEPSRVLSLRMDTEVPIARDQAQPSRLREVPVRIRVMTADGPLRYQGGYRLQPRPDASGWEIHGASVQPVLD
>NZ_CP047135.1|WP_128095580.1|766317_766626_-|DUF3861-family-protein
MTSPSQRYRITVTPIEKDGLQCSGRCTIELEHRAQQDWMRLMEIARRQTGLSGDERAAAIVATQLLHDLAQRHAHEPGHPLSVLQPQLGEVLTALQAIQQAP
>NZ_CP047135.1|WP_038689886.1|766901_767300_-|DNA-binding-protein
MAKTAKKAAPKKAVKKVATKAAAKPAAPKPIKDVLSKSGLVAHIVETSGVVAKDVRAVLASLEGAVAASVHKKGAGSFTLPGLLKITTVSVAAKPKRKGINPFTKEEQWFAAKPASTKLKVRPLKKLKDAAL
>NZ_CP047135.1|WP_128095581.1|767676_768108_+|OsmC-family-protein
MGISRHATAHWEGDLKTGKGQLSTPQSGLLDKTRYAFSSRFGDEKGTNPEELIAAAHAGCFTMALSAKLTEAGFVPTSLDTEAKVDLSMEGGPQLSQITLKVKAVVPNIDATQFRAIADDAKQNCPVSKALSAVPISLEAELA
>NZ_CP047135.1|WP_159495996.1|768191_769067_-|PhzF-family-phenazine-biosynthesis-isomerase
MTSRRFLQLDVFSPYPGAGNPLAVVLDAEGLDEAAMQAIARWTRLPETTFVFAPEAPGSSYRLRMFSPQKEVPFAGHPSVGTAHAVLEEAVAAPVDGVLVQDGIAGTLPLQVDGTGAARTIAIRTPRASVAEVAQPDDPRLQAALAGWSLGALPPARMAGGRSWWVVELRDEATLRALRPDWDVIAALAESTDSMGVFAYARSTGASWDLAVRAFVGNGRRFEDAASGAANAVLAAWLDSRDALPGAGRRYVVSQGREVGHDARLSLHIDANGDVWSGGQVQTVIRGTLDW
>NZ_CP047135.1|WP_159495997.1|769247_771851_+|bifunctional-aspartate-kinase/diaminopimelate-decarboxylase
MSASPLVDRWIVLKFGGTSVSRRHRWDTIGKLAKKRAEETGARVLVVVSALSGVTNELTAIADGAADSRARVDALVARHREFLVELALDATALDERLAGLSGLLDDPRAASRPLDWQADVLGQGELLSSTVGAAYLHASGLDFGWMDARQWLDALPPQPNQSDWSQRLSVNCQWRADADWAARFRAQPTRMLITQGFISRHADGGTAILGRGGSDTSAAYFGALLGASRVEIWTDVPGMFSANPRDVPDARLLTRLDYYEAQEIATTGAKVLHPRSIKPCRDAGVPMAILDTERPELPGTSIDGNAAPVPGVKAISRRNGIVLVSMEGIGMWQQVGFLADVFGLFKKHGLSVDLIGSAETNVTVSLDPSENLVNTDVLAALSADLSQICKVKIIVPCAAITLVGRGMRSLLHKLSDVWATFGRERVHMISQSSNDLNLTFVIDEADADGLLPILHAELIDSGAMPVEEGEVFGPRWREIAGTVRPRETAWWRGQRAHLLTLAQAGTPRYVYNLPTVRARARALTAIKAIDQRYYAIKANSHPAILEVLEQEGFGLECVSHGELKHVFNTLPTLSPRRVLFTPSFAPRAEYDAAFALGVTVTVDNVEALQRWPDLFRNRELWLRVDLGRGEGHHAKVRTGGKDSKFGLPIARVDEFVRLATELGTRVVGLHAHLGSGVETAQHWRLMCDELAGFARRIGSVETIDIGGGLPIPYSADDEPFDLDAWAVGLAEVKAVHPAFRLAIEPGRYLVAESGVLLATATQVIEKDGVRRVGLDAGMNTLMRPALYDAWHDIENLSRLGGYAEAAFDVVGPICESSDVFGKRRKLPVSTAPDDVMLIADAGAYGYVMANTYNQRELPREDVIDDGP
>NZ_CP047135.1|WP_159495998.1|771921_773274_+|endonuclease-domain-containing-protein
MTAFDKHQVAVFRFVRCDFAADTGVAQLVYAFDDGPELTETVTIPGAPFALDGARAEAVQRALRLLHLIAGVSYYKAGVPDQVRIDSYSIDAATAALVEEVYLNGLGEFAYRNGLNLRGRFRLPVDGEAFSAPAVGLREHALVAIGGGKDSLVSIEALRGLGIAETVTWIGGSQLIRACAERTGLPTLNIGRALAPELFDLNRQGAWNGHIPVTAVNSAIMVLAALLQGVDQVVFSNERSASYGSQIPGTGEVNHQWSKGWAFEQAFGEYLEQHVAADLHYYSLLRPLSELAVARQFAKSDVYDAHFSSCNRNFHILGERPVNRWCGVCPKCHFVFLALAPFMPKTRLVAIFGRNLLDDPEQAGGFDALLEFQDHKPFECVGEGRESRAAMATLAARPEWAEDALVKRFVSEIQPQLDSTELGIAPLLVLEGEHRIPASIWERLRANFAA
>NZ_CP047135.1|WP_159495999.1|773254_774664_+|UDP-N-acetylmuramoyl-L-alanine--D-glutamate-ligase
MRISQLEGKRVALWGWGREGRAAFGVLQQRLPSLPLTLFCPEAEAAAVRAETAGALAVRSDVTGAALAAFEVVIKSPGISPYGEAALHATAAGTQFIGGTSLWFAEHAAADGTVQDTVCVTGTKGKSTTTSLLAHLLRASGARTALVGNIGLPLLEVLDPQPAPQYWAVELSSYQTGEVARSGAHPQVAIVLNLFPEHLDWHGSEARYIADKLRLVTEAQPRIAVLNAADPHLAALSLPNSQVVWFNQPQGWHMRGEVVYRGEHAVFDTANTPLPGRHNRGNLCAVLAALEALGLDAAALAPAVQDFRPLPNRLQTVGTRDGLTFVNDSISTTPHASLAALDCFAGQRIALLVGGHDRGLDWQDFVQHMAHDMPPVEIITMGANGPRIHALLQPLADAGRFGLHAAADLAEAMQLARTALGVQGGVVLMSPGAPSYGVYQDYVARGRHFAALAGFDPEAITAIAGIGIA
>NZ_CP047135.1|WP_159496000.1|774720_775320_-|SMI1/KNR4-family-protein
MTLVDRFLTGLVPRLPDDEVPMWAWTEGASATDRQRLRDRWPQVPDSLVDLLGRIDGTHYRAYPGGEVCVPMLGSDLGSYPYYLRSIEQIFEDTAQWDSWGESIRSIYEEWLEEDADILGAGIDADLPMGQRLCFAHCVNNGGTSMLYLDFDPAPGGVVGQVVRYLHDPDSYVVIAPGFDAYLAQLIEDEYLFMGDQDG

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Crispr_ID: NZ_CP047135_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP047135_4

885394-885497

Orphan

Consensus_repeat	Method
ACGATATCGCTGCGAAGGGCAGCCGGGCAGAGCCCGGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP047135_4

>merge|NZ_CP047135|4|885394-885497|CRISPRCasFinder
ACGATATCGCTGCGAAGGGCAGCCGGGCAGAGCCCGGCTCTACGGCCCGGCTGGGGTCCAACGTTGACGATATCGCCGCGAAGGGCAGCCGGGCAGAGCCCGGC

>NZ_CP047135|4|4|885394-885497|CRISPRCasFinder
ACGATATCGCTGCGAAGGGCAGCCGGGCAGAGCCCGGC	TCTACGGCCCGGCTGGGGTCCAACGTTG
ACGATATCGCCGCGAAGGGCAGCCGGGCAGAGCCCGGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP047135.1\|WP_159496078.1\|880112_883106_-\|excinuclease-ABC-subunit-UvrA	unknown	unknown	gnl\|CDD\|234734
NZ_CP047135.1\|WP_038689694.1\|879705_880113_-\|acyl-CoA-thioesterase	unknown	unknown	gnl\|CDD\|223894
NZ_CP047135.1\|WP_038689702.1\|876332_877241_-\|acyl-CoA-thioesterase-II	unknown	unknown	gnl\|CDD\|224857
NZ_CP047135.1\|WP_159496085.1\|896839_898468_-\|alpha,alpha-trehalase-TreA	unknown	unknown	gnl\|CDD\|237326
NZ_CP047135.1\|WP_038689686.1\|884194_885247_+\|GTPase-ObgE	unknown	unknown	gnl\|CDD\|237048
NZ_CP047135.1\|WP_159496074.1\|875827_876331_-\|pathogenicity-like-protein	unknown	unknown	gnl\|CDD\|378182
NZ_CP047135.1\|WP_159496082.1\|892044_892995_+\|4-hydroxy-3-methylbut-2-enyl-diphosphate-reductase	unknown	unknown	gnl\|CDD\|234893
NZ_CP047135.1\|WP_159496084.1\|896101_896821_+\|lysoplasmalogenase	unknown	unknown	gnl\|CDD\|377946
NZ_CP047135.1\|WP_159496075.1\|877507_878287_-\|enoyl-CoA-hydratase/isomerase-family-protein	unknown	unknown	gnl\|CDD\|119339
NZ_CP047135.1\|WP_159496076.1\|878321_878765_+\|copper-chaperone-PCu(A)C	unknown	unknown	gnl\|CDD\|377298
NZ_CP047135.1\|WP_038689688.1\|883733_883994_+\|50S-ribosomal-protein-L27	unknown	unknown	gnl\|CDD\|235464
NZ_CP047135.1\|WP_159496079.1\|886027_887632_+\|murein-biosynthesis-integral-membrane-protein-MurJ	unknown	unknown	gnl\|CDD\|240528
NZ_CP047135.1\|WP_159499218.1\|894227_896105_+\|peptidase-M61	unknown	unknown	gnl\|CDD\|226483
NZ_CP047135.1\|WP_159496080.1\|887707_888655_+\|bifunctional-riboflavin-kinase/FAD-synthetase	unknown	unknown	gnl\|CDD\|235536
NZ_CP047135.1\|WP_128095195.1\|891482_891989_+\|lipoprotein-signal-peptidase	unknown	unknown	gnl\|CDD\|234739
NZ_CP047135.1\|WP_019184515.1\|885641_885911_-\|30S-ribosomal-protein-S20	unknown	unknown	gnl\|CDD\|178943
NZ_CP047135.1\|WP_159496081.1\|888651_891483_+\|isoleucine--tRNA-ligase	unknown	unknown	gnl\|CDD\|235588
NZ_CP047135.1\|WP_038689690.1\|883400_883718_+\|50S-ribosomal-protein-L21	unknown	unknown	gnl\|CDD\|235510
NZ_CP047135.1\|WP_159496077.1\|878805_879579_-\|enolase	unknown	unknown	unknown
NZ_CP047135.1\|WP_159496083.1\|893203_894010_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP047135.1\|WP_159496078.1\|880112_883106_-\|excinuclease-ABC-subunit-UvrA	gnl\|CDD\|234734	PRK00349, uvrA, excinuclease ABC subunit UvrA.	0
NZ_CP047135.1\|WP_038689694.1\|879705_880113_-\|acyl-CoA-thioesterase	gnl\|CDD\|223894	COG0824, FcbC, Predicted thioesterase [General function prediction only].	8.8254e-33
NZ_CP047135.1\|WP_038689702.1\|876332_877241_-\|acyl-CoA-thioesterase-II	gnl\|CDD\|224857	COG1946, TesB, Acyl-CoA thioesterase [Lipid metabolism].	8.08143e-140
NZ_CP047135.1\|WP_038689686.1\|884194_885247_+\|GTPase-ObgE	gnl\|CDD\|237048	PRK12299, obgE, GTPase CgtA; Reviewed.	0
NZ_CP047135.1\|WP_159496074.1\|875827_876331_-\|pathogenicity-like-protein	gnl\|CDD\|378182	pfam09413, DUF2007, Putative prokaryotic signal transducing protein. This is a family of putative prokaryotic signal transducing proteins of Pii-type.	0.00824751
NZ_CP047135.1\|WP_159496082.1\|892044_892995_+\|4-hydroxy-3-methylbut-2-enyl-diphosphate-reductase	gnl\|CDD\|234893	PRK01045, ispH, 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Reviewed.	0
NZ_CP047135.1\|WP_159496084.1\|896101_896821_+\|lysoplasmalogenase	gnl\|CDD\|377946	pfam07947, YhhN, YhhN family. The members of this family are similar to the hypothetical protein yhhN expressed by E. coli. Many are annotated as possible transmembrane proteins, and in fact they all have a high proportion of hydrophobic residues. A human member of this family, formerly known as TMEM86B, is a lysoplasmalogenase that catalyzes the hydrolysis of the vinyl ether bond of lysoplasmalogen. Putative conserved active site residues have been proposed for the YhhN family.	2.80177e-38
NZ_CP047135.1\|WP_159496075.1\|877507_878287_-\|enoyl-CoA-hydratase/isomerase-family-protein	gnl\|CDD\|119339	cd06558, crotonase-like, Crotonase/Enoyl-Coenzyme A (CoA) hydratase superfamily. This superfamily contains a diverse set of enzymes including enoyl-CoA hydratase, napthoate synthase, methylmalonyl-CoA decarboxylase, 3-hydoxybutyryl-CoA dehydratase, and dienoyl-CoA isomerase. Many of these play important roles in fatty acid metabolism. In addition to a conserved structural core and the formation of trimers (or dimers of trimers), a common feature in this superfamily is the stabilization of an enolate anion intermediate derived from an acyl-CoA substrate. This is accomplished by two conserved backbone NH groups in active sites that form an oxyanion hole.	6.72161e-52
NZ_CP047135.1\|WP_159496076.1\|878321_878765_+\|copper-chaperone-PCu(A)C	gnl\|CDD\|377298	pfam04314, PCuAC, Copper chaperone PCu(A)C. PCu(A)C is a periplasmic copper chaperone. Its role may be to capture and transfer copper to two other copper chaperones, PrrC and Cox11, which in turn deliver Cu(I) to cytochrome c oxidase.	5.86797e-39
NZ_CP047135.1\|WP_038689688.1\|883733_883994_+\|50S-ribosomal-protein-L27	gnl\|CDD\|235464	PRK05435, rpmA, 50S ribosomal protein L27; Validated.	4.26711e-51
NZ_CP047135.1\|WP_159496079.1\|886027_887632_+\|murein-biosynthesis-integral-membrane-protein-MurJ	gnl\|CDD\|240528	cd13123, MATE_MurJ_like, MurJ/MviN, a subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins. Escherichia coli MurJ (MviN) has been identified as essential for murein biosynthesis. It has been suggested that MurJ functions as the peptidoglycan lipid II flippase which is involved in translocation of lipid-anchored peptidoglycan precursors across the cytoplasmic membrane, though results obtained in Bacillus subtilis seem to indicate that its MurJ homologs are not essential for growth. Some MviN family members (e.g. in Mycobacterium tuberculosis) possess an extended C-terminal region that contains an intracellular pseudo-kinase domain and an extracellular domain resembling carbohydrate-binding proteins. Proteins from the MATE family are involved in exporting metabolites across the cell membrane and are often responsible for multidrug resistance (MDR).	3.6933e-148
NZ_CP047135.1\|WP_159499218.1\|894227_896105_+\|peptidase-M61	gnl\|CDD\|226483	COG3975, COG3975, Predicted protease with the C-terminal PDZ domain [General function prediction only].	3.84892e-97
NZ_CP047135.1\|WP_159496080.1\|887707_888655_+\|bifunctional-riboflavin-kinase/FAD-synthetase	gnl\|CDD\|235536	PRK05627, PRK05627, bifunctional riboflavin kinase/FAD synthetase.	1.68335e-155
NZ_CP047135.1\|WP_128095195.1\|891482_891989_+\|lipoprotein-signal-peptidase	gnl\|CDD\|234739	PRK00376, lspA, lipoprotein signal peptidase.	1.60585e-64
NZ_CP047135.1\|WP_038689690.1\|883400_883718_+\|50S-ribosomal-protein-L21	gnl\|CDD\|235510	PRK05573, rplU, 50S ribosomal protein L21; Validated.	1.17743e-49
NZ_CP047135.1\|WP_159496081.1\|888651_891483_+\|isoleucine--tRNA-ligase	gnl\|CDD\|235588	PRK05743, ileS, isoleucyl-tRNA synthetase; Reviewed.	0
NZ_CP047135.1\|WP_019184515.1\|885641_885911_-\|30S-ribosomal-protein-S20	gnl\|CDD\|178943	PRK00239, rpsT, 30S ribosomal protein S20; Reviewed.	5.13058e-25
NZ_CP047135.1\|WP_159496085.1\|896839_898468_-\|alpha,alpha-trehalase-TreA	gnl\|CDD\|237326	PRK13271, treA, alpha,alpha-trehalase TreA.	0

>NZ_CP047135.1|WP_038689686.1|884194_885247_+|GTPase-ObgE
MKLVDEAEIQVTAGNGGNGCVGFRREKFIPLGGPDGGDGGNGGNVWIRADANLNTLVDFRHERIFKAQRGENGMGRQAYGKGGEDLVITVPVGTVVMNVATDEIIGDLTQHDDRLLVAKGGRGGLGNMHFKSSTNRSPRQALPGEEGEERLLKLELKLLADVGLLGFPNAGKSTLIRAVSAATPKVADYPFTTLYPNLGVVRVENYRSFVIADIPGLIEGAADGAGLGAQFLRHLQRTRLLLHLVDISPMEGGVEGVSPIEQVRAIERELEKHDPELLDKPRWLVLNKADLMFEDEAKAAAEKIVAELGWTQPWYLVSALGREGTWPIMTNIMAFFDRQKEDEAQARDAY
>NZ_CP047135.1|WP_038689688.1|883733_883994_+|50S-ribosomal-protein-L27
MAHKKGVGSSRNGRDSNPKYLGVKIFGGQAIDAGNIIVRQRGTQFHPGSGVGLGRDHTLFALVDGKVEFSVKGPKKRRTVSVVAEA
>NZ_CP047135.1|WP_038689690.1|883400_883718_+|50S-ribosomal-protein-L21
MYAVLVTGGKQYRVAQGETLRVEKLEVEVGNEITFDTILMLGDSDGIKLGDALSGASVTAKVVSQGRADKVRIIKFRRRKHHMKRQGHRQYYTEIEITGIAGGSK
>NZ_CP047135.1|WP_159496078.1|880112_883106_-|excinuclease-ABC-subunit-UvrA
MAMDFIRIRGARTHNLKNIDLDLPRDKLIVITGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLSVMEKPDLDHIEGLSPAISIEQKSTSHNPRSTVGTITEIYDYLRLLYARVGSPRCPDHGYPLEAQTVSQMVDHVLSLDTEQRYMLLAPVIRERKGEHAQVFDQLRAQGFVRVRVDGILHEIDAVPPLALRQKHTIEAVIDRFRPREDIKQRLAESFETALKLGDGMVSVQSLDVEDAPAHLFSSKYSCPVCDYSLPELEPRLFSFNSPVGACPGCDGLGMAEFFDPSRVVVHPELSLSAGAVRGWDRRNAYYFQLIASLAKHYKFDVDAAWQTLPEDVRQAVLYGSGEETITFTYFTEAGGRTQRKHRFEGIIPNLERRYKETESAAVREELAKYISERNCPECQGQRLNKAARNVFVADRALPELVVLPIDEALKFFSGMILPGWRGEIAGKIVKEIGERLGFLVDVGLDYLTLERKADTLSGGEAQRIRLASQIGAGLVGVMYVLDEPSIGLHQRDNERLLGTLTRLRDLGNTVIVVEHDEDAIRLADYVLDIGPGAGVHGGEIVGQGTLQDILDAPRSLTGQYLSGKRAIEIPARRHKPNPKMTLHLRGASGNNLKGVDLDIPSGLLTCITGVSGSGKSTLINDTLFSLAANEINGSSHAIAPYKEVEGLDLFDKVVDIDQSPIGRTPRSNPATYTGLFTPLRELYAQVPEARARGYSPGRFSFNVRGGRCEACQGDGLIKVEMHFLPDVYVPCDVCHGKRYNRETLEILYKGFNINDVLQMTVEDALKLFEPVPSIARKLETLVDVGLSYIKLGQSATTLSGGEAQRVKLSKELSRRDTGRTLYILDEPTTGLHFHDIEALLGVLHKLRDEGNTVVVIEHNLDVIKTADWIVDLGPEGGHRGGTILVTGTPEDVAACPTSYTGQFLAKMLPSTSARPQQPAATANKPDARPPRKVKPEKPAKKAAAAKSTGKASKTSTTSKKKKDA
>NZ_CP047135.1|WP_038689694.1|879705_880113_-|acyl-CoA-thioesterase
MSSEHKILARVPISVRWRDMDSMGHVNNAKYISYLEEARVRWMLGVDGVSMTDRIAPVVAATNVNYRLPIVWPNDIVVELFVERLGNSSVTIGHRIVDQNDDARLYSDGNVVVVWMDTQTGKSAPLPDAIRTAST
>NZ_CP047135.1|WP_159496077.1|878805_879579_-|enolase
MFHQTDVRVLQPGLTPFPVDVFAPDQPWLTDHLLPLIAIDLGLLRPELAGSVVTLLCPIEPYEGCLGDGTEAHHNAFTGSNWLAFELQADNRLRFLGNEGYFQRAPQNSDVLPVDEDLREHAAEMQDSHAAARAYFQQHGMLVSGVDVDDEDEAPQQQAYLDNLGGPLWHGNWTDYSTIPSAFRIDDLAGTTQHGSLHFRNDSTHLPDDGIRITRDGEPFFHVADVASYNWCASGADAILMFYEPRSRTVLFTFDWS
>NZ_CP047135.1|WP_159496076.1|878321_878765_+|copper-chaperone-PCu(A)C
MITKPFACVLLSLCALATSATAAEPACVSVREGWVRLPPGPMPMAAGYGTIRNDCRSAVVVIGAGSKAFGDVSLHETTLVEGISRMREVERLPIAAGATVELKPGGLHLMLMQPEVTLKEGAALPLRLSLEDGRKVDGVLQVRKAVP
>NZ_CP047135.1|WP_159496075.1|877507_878287_-|enoyl-CoA-hydratase/isomerase-family-protein
MTTLIEVINHGPIRELRLARPPVNALDTELCRHLIHAINQAMADDAHGIVLSGSERIFSAGMDVPHLLGHGEDRHKLLDSWQAFFGAVRTLAECRVPVVAALTGHAPAGGCVLALCCDYRILARSPDPAQPTVIGLNEVQVGLVAPEGIQRLMRRVVGHHRATQLLVGGEMVSAERALEIGLVDELADAAQVVPRAVAWLQRLLKLPRQPMLLTRAIARADLHEALHADLIQLDRFVEAWYAPDAQQALQQLAARLGKA
>NZ_CP047135.1|WP_038689702.1|876332_877241_-|acyl-CoA-thioesterase-II
MSDTHEPVVSELIDLLTLERLEDNLFRGQSRDIGTKYVFGGQVLGQALSAAQATVDNGRHVHSLHAYFLRAGNIDHPIVYDVDRTRDGGSFSVRRVTAIQHGKVIFFCAASFQQAEQGAEHQHKMPEVPQPEDIEPNRPLPPEVLERLPIKVQRWLSRGGPFEFRHVYPRDELNPPKRPPYHQVWLRLNEKVGDAPELHQALLAYASDFHLLGTATFPHGISYYQPHVQMASLDHAIWFHRPFRADDWLLYSLDSPSAQDSRGLARGQFFTRDGLLVASTAQEGLIRVVPDSAAAAAVPAKD
>NZ_CP047135.1|WP_159496074.1|875827_876331_-|pathogenicity-like-protein
MRQIFNSQRVETVEGVAQLLRDAGIEVRITNGRSYHSKRGSQFSYLDTSKATTHPTLWVVHANDQPRAREILRDARLLETTRRDHPTAEFAFRDQAGEVAPRRNWAWRIRIGLLLVIAAVAMVVVMRHRSAPPVAPAPAVQQAPTTAPAHPASPEDEEVRVRIQPAK
>NZ_CP047135.1|WP_019184515.1|885641_885911_-|30S-ribosomal-protein-S20
MANIKSAKKRAKQTVVRNARNTAQRSMLRTAVKKVIKALDANDAAGAEAAFAVAQPILDRFSSRGLIHKNKAARHKSRLTARIKAIKAA
>NZ_CP047135.1|WP_159496079.1|886027_887632_+|murein-biosynthesis-integral-membrane-protein-MurJ
MLRGLLSFSSMTMISRVLGLVRDQVITTTFGTNAVTDAFWVAFRVPNFLRRLFAEGSFATAFVPVFTEVKETRPHAELRELMSRVAGTLGGVLMLVTALALIFAPQLATLFSSGVDTDPAKHGLLVDLFRLTFPFLLFVSLTALAGGALNSFQRFAMPALTPVILNLCMIAGAVWLAPRLGGTPEKQILALGWAVLAAGLLQLLFQLPSLKGINLLTLPRWGWRHPGVRKVLTLMVPTLFGSSVAQINLLLDTVIAAKLTDGSQSWLSLADRFLELPLGVFGVALGTVILPALARHHVSTDKAGFSSALDWGLRTTLLISVPAMLGLVLLAEPLIATLFQYKEFTAFDTRMTALSVYGLSFGLPAFALLKVVLPAFYARQDTRTPVRAGIVALVANMVFNFLLLAVLYQVMVPDALKAQGVWVALGKQPGLHLALGIASALSSYLNLGLLWYWLGKTDVYQRKPGWAGYVTRLGLACAAMVAVLLALLHGMSGFTEMDKWHRMGNLALLVGGGGLTYLVALVAMGFRPRHLREH
>NZ_CP047135.1|WP_159496080.1|887707_888655_+|bifunctional-riboflavin-kinase/FAD-synthetase
MSRLFRSIEGGPLFPHGSVVCIGAFDGLHLGHRALVRHAAARARAMGVAAVAVAFEPLPREYFAQGEPPPRLTLARDKVAMLNELGVDAVGLLRFDARMAAMQPEDFVQQLLVQRLSAREVWIGPEFCFGNRRRGDLALLQAMGAEQGFTAGEIDPVDLHGERISSTRIRQLLREGNFTHANDLLGRPYSIGGRVVRGRQLGRTLGFPTANLRFPKTPALSGIYATWVHGVFDQPWPSVSSFGTRPTVDGVEPLLEAHLFDFQGDLYGRHIEVEFVAKLRDEEKFQDLAALTDQMHRDAEQARHILSEHRLRATA
>NZ_CP047135.1|WP_159496081.1|888651_891483_+|isoleucine--tRNA-ligase
MSQDYKATLHLPATEFPMRGDLPKREPGILSRWEDEGLYARLRENAQGRPLFVLHDGPPYANGQIHLGHAVNKILKDIIVKSRYLAGFDAPYVPGWDCHGLPIEIAVEKKWGKVGVKLDAEQFRQKCREFAEEQIELQRRDFKRLGVIGDWGNPYKTLSFDFEANEIRALSKVFANGHIVRGAKPVHWCFDCGSALAEAEIEYQDKTSPAIDVAYAARDGAQLAARFGATVPADVEVAVPIWTTTPWTLPASLAVSLGAEIEYVLAEGPAHNGRRRWLVLASALAERSLQRYGVDGLVVHGHATGAALENLLLAHPFYPTRDIPLLNGAHVSDEDGTGAVHTAPGHGQEDFVVSQQYGLMDKYNAGQINPVDGRGVYLSSTPPAGDVELAGVHLWKAQPLIVDVLRASGALLAHVEIVHSYPHCWRHKTPVVFRATPQWFISMDKANLRSDAMAAIDNVGWFPSWGKARIGGMVEGRPDWCISRQRTWGVPIAMFTHRETGEPHPRTVELMQQVADRVEQGGIDVWYSLDSAELLGDDAAQYEKVTDILDVWFDSGVTHEGVLLARGFGKPADLYLEGSDQHRGWFQSSLLTGVAIDKHAPYKQCLTHGFTVDEKGRKMSKSLGNGIEPQDIMKTLGADILRLWIASADYSNEMSLSQEILKRNADAYRRLRNTARFLLGNLDGFDPAQHRVAPADMVALDRWIVHRAFEVQEKIKAAYTSYTMAEIVQLLLNFCSVDLGSLYLDVTKDRLYTMPVDSRGRRSAQTAMYHIAEAFTRWIAPILSFTADELWGYLPGERKDNVLFATWYDGLEPLPADAPLTAADFDQLLALREQVSKVLEPMRANGAIGAALEAEITVAADADTAARWQPLADELRFLLISGDVQVRPATTDEVFVSAQPTEKTKCVRCWHYRADVGTVAAHPELCGRCVTNIDGAGEDRRWF
>NZ_CP047135.1|WP_128095195.1|891482_891989_+|lipoprotein-signal-peptidase
MSAVRPRPNALVWLLLSVAIIGLDQWSKAWVLSSLPEYQPVVVIEGFWNWFRTYNTGAAFSFLSDAGGWQLWFFTALAVGISGLMAFWLSRTARAHWRSAVPYALVIGGAIGNVIDRLMHGHVVDFIQWHIGDHYWPSFNIADAAIVVGAVGIAVFGLFDGKSEKKAG
>NZ_CP047135.1|WP_159496082.1|892044_892995_+|4-hydroxy-3-methylbut-2-enyl-diphosphate-reductase
MDVLLANPRGFCAGVDRAIEIVKRAIETLGAPIYVRHEVVHNRFVVDDLKARGAIFVEELDEVPDDNTVIFSAHGVSQAVRQEAERRGLKVFDATCPLVTKVHLEVARHCRAGRDVVLIGHAGHPEVEGTMGQWNRERGTGRIYLVEDVDDVATLEIEQPDNFAYTTQTTLSVDDTRGIIEAMRARFPAMQGPKNDDICYATQNRQDAVRDLAQRCDLVLVVGSPNSSNSNRLSELARREGVESYLIDGAHEIDPAWVAGKKHIGLTAGASAPQVLVDGVIARLKELGATGVGELDGEPESMVFALPKELRLRLIS
>NZ_CP047135.1|WP_159496083.1|893203_894010_+|hypothetical-protein
MSKQATPATAPAAMKSGQDDVAALFHQLRTQNRLLKLVLGGVLTVGGALALMGARTPPISATFDEINVARINIVGADGGRSMVIAARGLLPEPVVDGKEIKSGRGPMPGMLFYNGVGDEVGGLIYDGKLDAKGKPSAGVHLSMDRFGGDQQLAVHHYEVNGHMETGLSVYDRGLHQDYDALYQQYQAAPAGPEKQALRQKWKDAGGEQTQRLFVGRTRGDSSALILADAAGRPRIMMTVSPRGEPALAFMDDKGNVIQSLPQAATAKQ
>NZ_CP047135.1|WP_159499218.1|894227_896105_+|peptidase-M61
MRTTVLSVLLALSATGVQAQTPPPQDVAWPGVLRIEVDARDIGRRIFKVKATIPAKPGPLTLLYPQWLPGAHSPSGPIDKVAGLVVTANGKPLQWTRDQYDVYAFKVDVPDGASEVVAEFKFLSSQGGSQGRVVMTPEMLNLQWNANSLYPAGVITRNLQAQASVTLPKGWNYATALETERRDGDTVVFKPISYDHLVDSPLFAGRYYQQFDLDPGAKVPVRLNVFADDAKSLVVKPEQLQAHRALVQQIYKLYGARHFDHYDFLLALTSKLGGIGLEHQRSSENSAEPGYFTEWDKNWLGRDLLPHEFNHSWNGKYRRGADLSTPNFNVPMGDSLLWLYEGQTQFWGQVLAARSGMWSVQQTRETLANVAATYDRGRPGLAWRALQDTTNDPTIAQRRALAFRNYQLSEDYYSGGQMVWLEVEGKLRALTGNKRSLDDFAKAFFGVNDGDWNVHPYTFEDVVRTLNGIAPFDWASFLRERLDGHGSLTGGLEAAGWKLVYTDTPSDAVKAQETRAAGINLTYSLGVSVANSGVLTDVLWDSPAFNAGLAPGMTVLAVNGRVFKGDVLKDAVTAAKTDKAPITLLVRSFDRIDTVSLDYHGGLVYPSLQRIAGKPDRLAELWKAR
>NZ_CP047135.1|WP_159496084.1|896101_896821_+|lysoplasmalogenase
MTSRGRDVLIVAMAIAAVVGAGLDGDGRWVHWLAKPLTTLLIASIAWQAGRVGRVSATSTTLPPSGYRRAVLAGMGLSCIGDIALMLPMDAFVPGLVAFLLAHVCYIVAFRAGIHAGRGLGVAAVLLGAFAAGNLIALWPHLPADMRVPVLAYVVVLAVMAILAMARHWRAPAPQGIDRRSTAWAAGGAVLFVASDCLLAWDRFGGGLPMASLLVLSTYYAAQYGIARSVPVAHGTRES
>NZ_CP047135.1|WP_159496085.1|896839_898468_-|alpha,alpha-trehalase-TreA
MPACSRLTGLMLAALLCTGSAAAEPARPAPQPPDQQWQPLFQQVQGAHLFKDQKTFADAIPRQDARALLDHWQQAQTQPGYTLPAFVAARFTVPGDTAAYVPPAGESLRAHIDGLWPVLTRTTRTVDPHGSLLPLPEPYVVPGGRFREVYYWDSYFTMLGLASSGRWQQVRDMVDNFAWQLDQYGHIPNGNRSYYLSRSQPPFFSVMVDLLATHEGDEAYRRYLPQLRTEHAFWMRGADGLPPGAASERVVRLADGQLLNRYWDARAVPRTESWTDDLATAAQEPQRAPSQVYRDLRAGAESGWDFSSRWLADPAALGSIHTTAIVPVDLNSLLFHLEKTVARASKAAGDRAAARDYEQRAQARQEAINTLLWDATQGWYVDRDMERGQTRPALTAAALFPLWLQVATRAQARQTAAAVDAQLLRQGGLLTTTVRTGQQWDAPNGWAPLQWVAVDGLQRYGENTLARRIGTRFLHTVQAVYDSEGKLVEKYVVDGSAGGGGGGEYPLQDGFGWSNGATLALLDRLCPPRRTCVSAQDVGTAD

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Crispr_ID: NZ_CP047135_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP047135_5

1300603-1300758

Orphan

Consensus_repeat	Method
CAGCCGACCAACGGTCGGCTCTACC	CRISPRCasFinder

2 spacers

The CRISPR arrays of NZ_CP047135_5

>merge|NZ_CP047135|5|1300603-1300758|CRISPRCasFinder
GAGCCGACCGTTGGTCGGCTGCTCTCTGCGGAAATCCATGGCAGCCGACTAACGGCAGCCGACCAACGGTCGGCTCTACCTCGGGATGCAACGGTCGGCTCTACGGCCGGAATGCGCAATGCGGGATGCGTCAGCCGACCAACGGTCGGCTCTACC

>NZ_CP047135|5|5|1300603-1300758|CRISPRCasFinder
GAGCCGACCGTTGGTCGGCTGCTCT	CTGCGGAAATCCATGGCAGCCGACTAACGG
CAGCCGACCAACGGTCGGCTCTACC	TCGGGATGCAACGGTCGGCTCTACGGCCGGAATGCGCAATGCGGGATGCGT
CAGCCGACCAACGGTCGGCTCTACC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP047135.1\|WP_159496350.1\|1298430_1299177_+\|cytochrome-c1	unknown	unknown	gnl\|CDD\|225413
NZ_CP047135.1\|WP_038689276.1\|1299336_1299972_+\|stringent-starvation-protein-A	unknown	unknown	gnl\|CDD\|236537
NZ_CP047135.1\|WP_159496346.1\|1292144_1293680_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP047135.1\|WP_159496354.1\|1304130_1305279_+\|5-(carboxyamino)imidazole-ribonucleotide-synthase	unknown	unknown	gnl\|CDD\|235674
NZ_CP047135.1\|WP_159496345.1\|1291605_1292067_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP047135.1\|WP_159496355.1\|1305365_1305947_-\|superoxide-dismutase	unknown	unknown	gnl\|CDD\|223678
NZ_CP047135.1\|WP_159496351.1\|1301203_1302307_-\|DUF2272-domain-containing-protein	unknown	unknown	gnl\|CDD\|370785
NZ_CP047135.1\|WP_038689267.1\|1303630_1304134_+\|5-(carboxyamino)imidazole-ribonucleotide-mutase	unknown	unknown	gnl\|CDD\|223119
NZ_CP047135.1\|WP_038689261.1\|1306066_1306387_+\|Grx4-family-monothiol-glutaredoxin	unknown	unknown	gnl\|CDD\|188046
NZ_CP047135.1\|WP_141058627.1\|1300121_1300565_+\|ClpXP-protease-specificity-enhancing-factor	unknown	unknown	gnl\|CDD\|236987
NZ_CP047135.1\|WP_159499270.1\|1290013_1291609_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP047135.1\|WP_159496349.1\|1296555_1297176_+\|ubiquinol-cytochrome-c-reductase-iron-sulfur-subunit	unknown	unknown	gnl\|CDD\|273610
NZ_CP047135.1\|WP_159496357.1\|1307453_1310666_+\|Oar-protein	unknown	unknown	gnl\|CDD\|379297
NZ_CP047135.1\|WP_159496348.1\|1295431_1296373_+\|transglycosylase-SLT-domain-containing-protein	unknown	unknown	gnl\|CDD\|381594
NZ_CP047135.1\|WP_159496356.1\|1306383_1307127_+\|SDR-family-NAD(P)-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|236357
NZ_CP047135.1\|WP_038689272.1\|1300765_1301122_-\|DUF3301-domain-containing-protein	unknown	unknown	gnl\|CDD\|378706
NZ_CP047135.1\|WP_159496352.1\|1302447_1303305_-\|carboxylating-nicotinate-nucleotide-diphosphorylase	unknown	unknown	gnl\|CDD\|238806
NZ_CP047135.1\|WP_159496353.1\|1303301_1303571_-\|Trm112-family-protein	unknown	unknown	gnl\|CDD\|225391
NZ_CP047135.1\|WP_159496347.1\|1293774_1295232_-\|tRNA-(N6-isopentenyl-adenosine(37)-C2)-methylthiotransferase-MiaB	unknown	unknown	gnl\|CDD\|237673
NZ_CP047135.1\|WP_038689279.1\|1297178_1298438_+\|cytochrome-bc-complex-cytochrome-b-subunit	unknown	unknown	gnl\|CDD\|224209

Protein	Function_ID	Function_description	E-value
NZ_CP047135.1\|WP_159496350.1\|1298430_1299177_+\|cytochrome-c1	gnl\|CDD\|225413	COG2857, CYT1, Cytochrome c1 [Energy production and conversion].	4.10585e-70
NZ_CP047135.1\|WP_038689276.1\|1299336_1299972_+\|stringent-starvation-protein-A	gnl\|CDD\|236537	PRK09481, sspA, stringent starvation protein A; Provisional.	6.51848e-81
NZ_CP047135.1\|WP_159496354.1\|1304130_1305279_+\|5-(carboxyamino)imidazole-ribonucleotide-synthase	gnl\|CDD\|235674	PRK06019, PRK06019, phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed.	0
NZ_CP047135.1\|WP_159496356.1\|1306383_1307127_+\|SDR-family-NAD(P)-dependent-oxidoreductase	gnl\|CDD\|236357	PRK08945, PRK08945, putative oxoacyl-(acyl carrier protein) reductase; Provisional.	7.38193e-59
NZ_CP047135.1\|WP_159496355.1\|1305365_1305947_-\|superoxide-dismutase	gnl\|CDD\|223678	COG0605, SodA, Superoxide dismutase [Inorganic ion transport and metabolism].	5.08173e-83
NZ_CP047135.1\|WP_159496351.1\|1301203_1302307_-\|DUF2272-domain-containing-protein	gnl\|CDD\|370785	pfam10030, DUF2272, Uncharacterized protein conserved in bacteria (DUF2272). Members of this family of hypothetical bacterial proteins have no known function. However, given its similarity to the CHAP domain it seems likely that this is an enzyme involved in cleaving peptidoglycan.	1.23634e-61
NZ_CP047135.1\|WP_038689261.1\|1306066_1306387_+\|Grx4-family-monothiol-glutaredoxin	gnl\|CDD\|188046	TIGR00365, TIGR00365, monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation. [Energy metabolism, Electron transport].	6.81702e-56
NZ_CP047135.1\|WP_141058627.1\|1300121_1300565_+\|ClpXP-protease-specificity-enhancing-factor	gnl\|CDD\|236987	PRK11798, PRK11798, ClpXP protease specificity-enhancing factor; Provisional.	6.14507e-77
NZ_CP047135.1\|WP_159496349.1\|1296555_1297176_+\|ubiquinol-cytochrome-c-reductase-iron-sulfur-subunit	gnl\|CDD\|273610	TIGR01416, Rieske_proteo, ubiquinol-cytochrome c reductase, iron-sulfur subunit. This model represents the Proteobacterial and mitochondrial type of the Rieske [2Fe-2S] iron-sulfur as found in ubiquinol-cytochrome c reductase. The model excludes the Rieske iron-sulfur protein as found in the cytochrome b6-f complex of the Cyanobacteria and chloroplasts. Most members of this family have a recognizable twin-arginine translocation (tat) signal sequence (DeltaPh-dependent translocation in chloroplast) for transport across the membrane with the 2Fe-2S group already bound. These signal sequences include a motif resembling RRxFLK before the transmembrane helix. [Energy metabolism, Electron transport].	9.68224e-80
NZ_CP047135.1\|WP_038689267.1\|1303630_1304134_+\|5-(carboxyamino)imidazole-ribonucleotide-mutase	gnl\|CDD\|223119	COG0041, PurE, Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism].	8.50543e-83
NZ_CP047135.1\|WP_159496357.1\|1307453_1310666_+\|Oar-protein	gnl\|CDD\|379297	pfam13620, CarboxypepD_reg, Carboxypeptidase regulatory-like domain.	5.17158e-18
NZ_CP047135.1\|WP_159496348.1\|1295431_1296373_+\|transglycosylase-SLT-domain-containing-protein	gnl\|CDD\|381594	cd00254, LT-like, lytic transglycosylase(LT)-like domain. Members include the soluble and insoluble membrane-bound LTs in bacteria and LTs in bacteriophage lambda. LTs catalyze the cleavage of the beta-1,4-glycosidic bond between N-acetylmuramic acid (MurNAc) and N-acetyl-D-glucosamine (GlcNAc), as do "goose-type" lysozymes. However, in addition to this, they also make a new glycosidic bond with the C6 hydroxyl group of the same muramic acid residue.	1.65487e-44
NZ_CP047135.1\|WP_038689272.1\|1300765_1301122_-\|DUF3301-domain-containing-protein	gnl\|CDD\|378706	pfam11743, DUF3301, Protein of unknown function (DUF3301). This family is conserved in Proteobacteria, but the function is not known.	1.94933e-32
NZ_CP047135.1\|WP_159496352.1\|1302447_1303305_-\|carboxylating-nicotinate-nucleotide-diphosphorylase	gnl\|CDD\|238806	cd01572, QPRTase, Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.	1.1244e-127
NZ_CP047135.1\|WP_159496353.1\|1303301_1303571_-\|Trm112-family-protein	gnl\|CDD\|225391	COG2835, COG2835, Uncharacterized conserved protein [Function unknown].	5.51026e-13
NZ_CP047135.1\|WP_159496347.1\|1293774_1295232_-\|tRNA-(N6-isopentenyl-adenosine(37)-C2)-methylthiotransferase-MiaB	gnl\|CDD\|237673	PRK14325, PRK14325, (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional.	0
NZ_CP047135.1\|WP_038689279.1\|1297178_1298438_+\|cytochrome-bc-complex-cytochrome-b-subunit	gnl\|CDD\|224209	COG1290, QcrB, Cytochrome b subunit of the bc complex [Energy production and conversion].	8.59636e-129

>NZ_CP047135.1|WP_141058627.1|1300121_1300565_+|ClpXP-protease-specificity-enhancing-factor
MTEDTFRMTSHRPYLLRALVEWINDNDLTPHILVDAGMPGVQVPQSAVKDGRVVLNIAERAVVQLHIDNDGVSFSARFSGTSYPVHVPISAVLAVYARETGQGMALPDDIPGHEPGPDDELPPDDSPTPPDDLPPKPSGRPHLRVVK
>NZ_CP047135.1|WP_038689276.1|1299336_1299972_+|stringent-starvation-protein-A
MAASVRMRNTLTLFSSNDDVLCHRVRLVLAAKGVSYDFVPVDPQNPPEDLIDLNPYHSVPTLVERELVLYAASVVSEYLDERYPHPPLMPVDPLSRARIRLAMLRIEHDWVPQVQAIQLGNKTQAEAGRKRLKELLTSAVPLFKASKFFLNPEMSLADCAMAPIIWRLQSLDVPLPKDGKSIEDYGNRIFRHPGFIRSLTDQEKKLRDLPG
>NZ_CP047135.1|WP_159496350.1|1298430_1299177_+|cytochrome-c1
MTDHWIVRLACAAALMLSSAIAGAAEGGKTLQAGNDLSDRASLQRGAQLYMNYCSGCHALKYLRYSRMAADLGLSEDEVMNNLNFTGTPIGEPIPVSMPKAQAEKWFGKMPPDLSLIARVRGSDWVYTYLKSFYVDPSRPLGWNNSLFPNASMPNPLWEMQGLQHAVHGKPESPGADPPVTGLKIAQPGNVDAQQYDQTVRDITNFLEYAGEPAALKRQKLGVWVILFLALLTFLAYLLKKEYWKDVH
>NZ_CP047135.1|WP_038689279.1|1297178_1298438_+|cytochrome-bc-complex-cytochrome-b-subunit
MANILSRTATGVADWVNARAPGLMPVYRKHVSEYYAPKNFNIWYYFGSLALLILVNQIVTGIFLTMHYKTNAAEAFASIEYIMRDVEWGWLIRYMHSTGASLFFIVVYLHMFRGLLYGSYQKPRELVWILGMLIYLVLMAEAFMGYVLPWGQMSFWGAKVIISLFGAIPVIGTGLTEWIMGDYLPSDATLNRFFALHVIALPLVLLLLVVLHLGALHEVGSNNPDGVEIKKGPKGNRWSATAPTDGIPFHPYYTLKDGVGAGFLLIIAAFIIFFAPAFGGLFLEHDNFTEANRLVTPEHIKPVWYYTPYYAMLRVVPNKLGGVLVMFSAIAILFLVPWLDRARVKSYRYRGWLSRVLLGVFAVCFVWLGVIGSGPGTDAHETYVGRVLTFLYFAFFITMPLWTRLDRTKPVPDRVTTHD
>NZ_CP047135.1|WP_159496349.1|1296555_1297176_+|ubiquinol-cytochrome-c-reductase-iron-sulfur-subunit
MANDGVNDPVNTGRRRFLSATTAVVGAVGVGFAAVPFIKSWNPSARAKLAGAPVIADISALQEGQRLVMEWRGQPIWIVKRSKAILEALHGLDDRLKDPASGEKDQQPEYVLKQNPEFRSIKSDVSVLVGLCTHLGCSPEMVAEIRPEPYDPQWKGGYFCPCHKSRFDMSGRVFKDVPAPINLLVPPHHYQDDNTIIIGVDPQGAA
>NZ_CP047135.1|WP_159496348.1|1295431_1296373_+|transglycosylase-SLT-domain-containing-protein
MKGILGIAALALAALTALPASAGTLYKCVGADNIPSYVSKRVSGASCSVVSSYRPDRGAARRYVPPAPAAPAVVATPAPSPAAADHASTGTAVTASAPAQPATVLSAPAAPAARPNKAGRVVNGQVYSYMKDGVRHYTSARPTQLASLGQVRTIHYSFIERCYACGANPGVNFGSVRLNTTAFQAEIAAAAREFGVEEAVVRAIIHAESAYNPTALSRAGAQGLMQLMPPTARRFGVTDSYDAAQNIRGGVQYLSWLLKRFNGNLTLAAAGYNAGEGAVDRHGGVPPYSETQYYVKRVAQLADRYRGAQATTQ
>NZ_CP047135.1|WP_159496347.1|1293774_1295232_-|tRNA-(N6-isopentenyl-adenosine(37)-C2)-methylthiotransferase-MiaB
MTGTPASTAPTSAGSALPASVSPDSPRPDLIPLPGTRPKVDGPVRGKLYIKTHGCQMNEYDSSKMADVLAAAEGLELTDDPAEADVLLMNTCSIREKAQEKVFSQLGYWKALKNNGRGVIIGVGGCVASQEGEAIIKRAPHVDLVFGPQTLHRLPELIRQRRESGKSQVDISFPEIEKFDRLPEPRADGGSAFVSIMEGCSKYCSFCVVPYTRGTEVSRPFEDVVVEVAQLAAQGVREINLLGQNVNAYRGPYGEGEFADLGLLIRTIAEIDGVGRIRFTTSHPLEFSDSLVDAYRDVPQLANFLHLPVQAGSDRVLSAMKRGYTALEFKAKIRKLRAVRPDISISSDFIVGFPGETDEDFEKTMKLIEDIGFDHSFSFIYSRRPGTPAADLEDTISDAEKHARLSRLQARINEHAAGISAKMVGTVQTVLVEGPSKRDPNELTGKTENMRSVNFPGHPRLVGQFVDVVITEAYSNSLRARMVTA
>NZ_CP047135.1|WP_159496346.1|1292144_1293680_+|hypothetical-protein
MDDGCWSKSVPVRASALAIAGLLAAPLAAACTGEAGDTQAVATSTVESRLFVTGNTEGFATRVSPFDTDAQNRAVLPDVEVSQAPEDPSSERFGAAGGTAIHGEHSDGRWRVCREERWQPRTNSGAARQADAAAPGAEAAKRWSKDFFVGAVRTYRYDTAGRLLEARDVVSPDVLPQAGVAWLVPKSGLLYCARYESQGRMTWSIDTAGVGRWDPGKVCADLSEDTVDSLRVTYNEDGSVLALLRTRPSSLPEGGGVALMHPDGYSDAGWTGTATFLLPPRQGIDAADNTVSARIAEGRGIASLSTRRKDFAAYDAQPPYHERPQVEAQYNAKVYYDFPDADIPMSAARDGFADLADYPRVRSYVYDKGVRVEEVFAAGTHAPRQRVWRSRFALRQEDYDAAGKLQQVVHYGDEIPGGHAEDLAGAGRRAGFKHVLLTKGGSAYRVYRYDRNGRERLELACWSTMGGAGGVAEEAQCGGADGKVRAEGAAIEGLLRDTYGVSQRRLAYTPM
>NZ_CP047135.1|WP_159496345.1|1291605_1292067_+|hypothetical-protein
MSPLPEVRSILDREEGAGAEVHKAVLHTPLSRLTIWSLALSILGLLSLVGLAAAAFAVEWESISERLVVSVLVILLSQLIVFFTGMLLATISLFRRRQFWRSATLALAVNILGLAAMFFVGYAIVAAMAALAVGAAQAALGGLMVLLLMIFAK
>NZ_CP047135.1|WP_159499270.1|1290013_1291609_+|hypothetical-protein
MVIASALCSGGRALACTDSLDPLASPATGVSLLFSNGQEGVVGVATPRLLPGGRLAPPAISPALKELKAGKFDQWGGGVVFTEDDGRGGKGVCRVETWKSRNLNAVVRDSLGGKPERLRDSDGRVAAIAYMPTPAQERHPVLVKLLPHYYMSSATAFYYDGSNNLIEVDRYMSPEANRLNPKYPLKIIARSVLYCFRYEDGRLVQSAGLPGPSVSKDPAFSCGQLKAGEHSLERYRYNTDGTLRAMLNYYGEDDADSSESQRKPGGGGYGSIWLPERLPSGEQARVEVHFNSKDELTDLSTTYLEFAAADAQPSYAARGDAGGSTLEYRFTVSPVPLSVTDKGFAAIGSYPRVRIFPHRSGMTVSEVFDAGSRRPRQRQWRSLDLNRQEMYGGNGKLIRVVQYGAAPQDAYEADLKRYAESGVLKVTPTTAGYASYRVYDYDTAGKERLVLVCWQHDVPSNKPLRHFPWWTPDPTPKRSKEEALIYDMKNVANRCGSPDGKMVIQGLSQIDAYMAKHYDYDVEKLSYGVAQ
>NZ_CP047135.1|WP_038689272.1|1300765_1301122_-|DUF3301-domain-containing-protein
MPSLILLMIAGAFAYAFWNSARAAAERAGELGRNACRAADVQWLDQSVHSTGLRVCRKPNGWLGWERTFKFEYSHDGVDRHSGRMVLRGDELVSFVGPSAARISEIRRSVDTSGAEDV
>NZ_CP047135.1|WP_159496351.1|1301203_1302307_-|DUF2272-domain-containing-protein
MRPLFLLACLSPLATLLPATAAAAEVCDIPPRFGLSPLAVNIVQTACNEHRLWYRPFIDRDGRVASISATEAEDVHLADNGMVAWQRVVGYWRQSGTLSPMGGQPGASSCMAPPGTRYTDTDCRAFLIDNPWSAAFISWVMTRASVPGFTRSPRHIDYLRAAYQNSGPYRMTDPAQEKPAPGDLLCYLRDRREALSYSGLVQSLGSGAVTHWKSHCEVVIAANMGGDRTLYLIGGNVMNTVAMRKLSLDRSGRIELPPAKATASDGMERGCTPGREEECNFNRQDWAALLKLVATAPAALPPSPTTSPPAADGMPPGPAQPLPPPRPLPVSPAAPGSAPAPTRPPPSPATPAQPPVPLPGAAPRSGG
>NZ_CP047135.1|WP_159496352.1|1302447_1303305_-|carboxylating-nicotinate-nucleotide-diphosphorylase
MSRAELAAPDAAAVEADVARALAEDIGSGDVTAALLPDCPDSAYLLCKQDAVIAGRPWFDATHRALDPQVRIDWRVAEGDHVAAGTVLAILHGRNRSLVSAERTSLNFLQTLSGTATTTARHVAAVAGTGARILDTRKTLPGLRVAQKYAVRCGGGDNHRLGLFDTVMLKENHIRAAGSLTAAVQAARAQWPQLPLVVEVEDLDQLREALAVGCERILIDDFDADLRREAVRIAAGRIPLEVSGSVGLDGLRAIAEDGVDCISIGGLTKHVQAIDLSLKLGPPPG
>NZ_CP047135.1|WP_159496353.1|1303301_1303571_-|Trm112-family-protein
MDRKLLDLLCSPDTRQPLSLLDAKGLEALNRAIGAGTVLKADGSTQALALREALLTRDRKQVFRVDDGIPVLLAEEAIATAQIAGFPEK
>NZ_CP047135.1|WP_038689267.1|1303630_1304134_+|5-(carboxyamino)imidazole-ribonucleotide-mutase
MTPNQSAPLVGIVMGSRSDWETMQHAAQKLDALGVPYEVKVVSAHRTPDVLFTYAEQAGSRGLRAIIAGAGGAAHLPGMIAAKTAVPVLGVPVQSKALNGMDSLLSIVQMPAGIPVATFAIGNAGASNAALFAAAMLAPEQPAIGQALDAFRARQTEDVMAHDDPRQ
>NZ_CP047135.1|WP_159496354.1|1304130_1305279_+|5-(carboxyamino)imidazole-ribonucleotide-synthase
MSTRTVGILGGGQLARMMVLAGAPLGLRFELFDPAADACGAQVAPLQVAAFDDEAALAAFAARVDVVTFDFENVPAHSARFLAERVPVYPNPDALAVAQDRLSEKTLFQQLGIPLPPFADIRSRDELAARVAEFGMPCIVKTRRLGYDGKGQFRIRSAADIDAAWATLGEYVEKTGLILEGFVAFDREVSVVAVRGRDGEFRAWPVTGNWHVDGVLSASLAPARLSPAQHEAAIGHARALAERLDYVGVFALELFCRGDELLVNEMAPRVHNSGHWTIEGSETSQFENHLRAVLGLPLGDTRMLGQACMLNWLGAMPVAEAVLGQPGGHWHDYGKQPRDGRKVGHATLRDDDAGRLADALENVGGQLDRGAQVAPVVAALRG
>NZ_CP047135.1|WP_159496355.1|1305365_1305947_-|superoxide-dismutase
MPLDLPRLPYDRAALQPHLSAETLDLHHGRHQRAYIDAVNARIEGTELADLPLEDIVRQSQGSLFDAAAQAWNHAFYFQCLHPRGGGDPKDRLGELVTRHFGDVRRLREEFERAALGLFGSGWVWLVQHPTGALAIQSTRNAGTPLTGHSTPLLACDVWEHAYYTDYQNERARYLEAFWKVVNWDFVAAQLRD
>NZ_CP047135.1|WP_038689261.1|1306066_1306387_+|Grx4-family-monothiol-glutaredoxin
MAVMQQIQTEVERYPLVLFMKGTPQYPMCGFSSRAIQALMAAGAVALRTVNVLEEPEVRANLPRFSNLPTFPQLFIHGELIGGCDIVLELFESGELKRIVEEASLP
>NZ_CP047135.1|WP_159496356.1|1306383_1307127_+|SDR-family-NAD(P)-dependent-oxidoreductase
MSAVPSVVVGTGSLADRVILIAGAGGGFGSAAAVACAEAGATVVLLGRKPRRLDRVYAAVQAAGPEPLLYPMDLEGATPDDYAALAERLQSELGRLDGLLYCAADFAGLTPFELADPAAFARAVHVNLTAPAWLAQACLPLLRQRDDAALVFTVDDPARVGQAYWGGYGAAQHGLRGLISSLHDELGRSPVRVSGLQPGPMRTALRARAFSLDEDRSARDPVDCAQAAVLLLSAAGAAHRGQIHTPA
>NZ_CP047135.1|WP_159496357.1|1307453_1310666_+|Oar-protein
MTHLRMSKLTLGLVAALAAAPAFAQSTSAGVGGQVTSAAGSPVVGAEVTITHTESGTVSRATTDASGRYNARGLRVGGPYTITINKAGEGTKTEEGVYLNLNQVNTVNANLAGDVAATNLDAVQVVAIAGGLDIFSATKMGTGTNVTRETMDALPSANRNIQDYVRLDPRISQVSKADGAISAGGQNTRYNAIRIDGISASDPFGLGSNNLPTERQPVSMDAIQEINIDLANYDTTIAGGTGAVINAVTKSGTNEFHGTVYGSYRDKDMVRSRLEGDKQDFNGFEDEKTYGMTFGGPIVKDKLFFFSNYEKYERSAAGISLSDTPIGKGTISTADVTRVQDYLKGLGYDPGTLSAPNSKTEIEEYAVKLDWNINENHRAALRYNKMEQNVVRFPQVSSSAISLSNFWYQQPTEYETWMGELFSDWSENFSTEFKISHKDYSANRVPLVNMPQIRIRSGNDSLYVGTEQNTHVNIVESKELSAFGAGTWYVGDHTVKFGFDYSKNDLMNFYGRNLNGVYEFNSVNDFLNGTASRYQLRAPRADGSRSDIPADFTLKNTGVFVQDTWAINYNLSLMFGVRVDMPDFSDQRLYNPRIEQLYGFNNTQLVDKSLVQPRVGFNYTFDSDRPTQLRGGVGLFGGAAPNVWLAGAYQNTGLNYIEYDQRNPPVGTFTPDGNNPYVPAGGPASARQNVDIIAPGTRLPSVWKANLAFDHELPWYGIVASAEVLMTKVKDGIYFDRLDVSAPTTFGPDGRAIYWNAAGRNPANSRIQNGTNFGITTGTSGANDRANRPTDMGDVLVMRNTDKGRGSQATFSLAKPLTENWGWSLGYTYTQSKEVSPLTSSQNTSNWNNTPIFNANEDVAYNSRYAIKDRITGTLEWKHNFFGDNATRVGLFYEGRSGRPFSYIFYNDANGDGAATNDLFYVPTGPGDVLFTGGAAMEKQFFDWLAQNPELDAFRGGVVPANQHRSKWTNSFDVRISQEFPGFMKEHKGEIALDIMNVGNLLNKKWGLIDDYGFYATRRVANYAGIDPATGKYVYSFTGADSSAIQENNNDKGNTAVSRWSMQLTLKYKF

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Crispr_ID: NZ_CP047135_6

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP047135_6

1554027-1554104

Unclear

Consensus_repeat	Method
CAGCCGACCAACGGTCGGCTCTACC	CRISPRCasFinder

1 spacers

cas3

The CRISPR arrays of NZ_CP047135_6

>merge|NZ_CP047135|6|1554027-1554104|CRISPRCasFinder
CAGCCGACCAACGGTCGGCTCTACCCGGTGGGGGTCATGGCCCCGGATGGAGACAGCCGACCAACGGTCGGCTCTACC

>NZ_CP047135|6|6|1554027-1554104|CRISPRCasFinder
CAGCCGACCAACGGTCGGCTCTACC	CGGTGGGGGTCATGGCCCCGGATGGAGA
CAGCCGACCAACGGTCGGCTCTACC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP047135.1\|WP_159496533.1\|1556334_1559844_+\|MMPL-family-transporter	unknown	unknown	gnl\|CDD\|223911
NZ_CP047135.1\|WP_159496532.1\|1555189_1556338_+\|efflux-RND-transporter-periplasmic-adaptor-subunit	unknown	unknown	gnl\|CDD\|273776
NZ_CP047135.1\|WP_159496525.1\|1543780_1544635_-\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|131484
NZ_CP047135.1\|WP_038688813.1\|1567971_1568298_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP047135.1\|WP_128096870.1\|1564712_1565243_-\|N-acetyltransferase	unknown	unknown	gnl\|CDD\|224168
NZ_CP047135.1\|WP_159496523.1\|1542481_1543258_+\|3-oxoadipate-enol-lactonase	unknown	unknown	gnl\|CDD\|131480
NZ_CP047135.1\|WP_128097386.1\|1547464_1548001_+\|adenine-phosphoribosyltransferase	unknown	unknown	gnl\|CDD\|235028
NZ_CP047135.1\|WP_128097390.1\|1554108_1554570_-\|cytochrome-c	unknown	unknown	gnl\|CDD\|225418
NZ_CP047135.1\|WP_159496535.1\|1563487_1564720_-\|TraB-family-protein	unknown	unknown	gnl\|CDD\|224828
NZ_CP047135.1\|WP_159496526.1\|1544730_1547157_-\|membrane-bound-PQQ-dependent-dehydrogenase,-glucose/quinate/shikimate-family	unknown	unknown	gnl\|CDD\|274418
NZ_CP047135.1\|WP_159496534.1\|1559840_1562930_+\|AcrB/AcrD/AcrF-family-protein	unknown	unknown	gnl\|CDD\|223911
NZ_CP047135.1\|WP_128096869.1\|1565262_1566150_-\|carbon-nitrogen-hydrolase	unknown	unknown	gnl\|CDD\|143597
NZ_CP047135.1\|WP_159496529.1\|1551141_1552044_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|182768
NZ_CP047135.1\|WP_159496524.1\|1543305_1543698_+\|4-carboxymuconolactone-decarboxylase	unknown	unknown	gnl\|CDD\|131478
NZ_CP047135.1\|WP_159496536.1\|1566884_1567922_-\|agmatine-deiminase	unknown	unknown	gnl\|CDD\|377332
NZ_CP047135.1\|WP_128097387.1\|1548225_1549602_-\|ATP-dependent-RNA-helicase-DbpA	cas3	cd09639_cas3_CAS-I	gnl\|CDD\|236977
NZ_CP047135.1\|WP_159496530.1\|1552080_1553964_+\|ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|236861
NZ_CP047135.1\|WP_159496531.1\|1554579_1554984_-\|c-type-cytochrome	unknown	unknown	gnl\|CDD\|225418
NZ_CP047135.1\|WP_159496528.1\|1549962_1551039_-\|YeiH-family-putative-sulfate-export-transporter	unknown	unknown	gnl\|CDD\|225411
NZ_CP047135.1\|WP_159496527.1\|1549650_1549935_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP047135.1\|WP_159496533.1\|1556334_1559844_+\|MMPL-family-transporter	gnl\|CDD\|223911	COG0841, AcrB, Cation/multidrug efflux pump [Defense mechanisms].	0
NZ_CP047135.1\|WP_159496532.1\|1555189_1556338_+\|efflux-RND-transporter-periplasmic-adaptor-subunit	gnl\|CDD\|273776	TIGR01730, COG0845:_Membrane-fusion_protein, RND family efflux transporter, MFP subunit. This model represents the MFP (membrane fusion protein) component of the RND family of transporters. RND refers to Resistance, Nodulation, and cell Division. It is, in part, a subfamily of pfam00529 (Pfam release 7.5) but hits substantial numbers of proteins missed by that model. The related HlyD secretion protein, for which pfam00529 is named, is outside the scope of this model. Attributed functions imply outward transport. These functions include nodulation, acriflavin resistance, heavy metal efflux, and multidrug resistance proteins. Most members of this family are found in Gram-negative bacteria. The proposed function of MFP proteins is to bring the inner and outer membranes together and enable transport to the outside of the outer membrane. Note, however, that a few members of this family are found in Gram-positive bacteria, where there is no outer membrane. [Transport and binding proteins, Unknown substrate].	9.9975e-91
NZ_CP047135.1\|WP_159496525.1\|1543780_1544635_-\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|131484	TIGR02431, p-hydroxybenzoate_hydroxylase_transcriptional, beta-ketoadipate pathway transcriptional regulators, PcaR/PcaU/PobR family. Member of this family are IclR-type transcriptional regulators with similar DNA binding sites, able to bind at least three different metabolites related to protocatechuate metabolism. Beta-ketoadipate is the inducer for PcaR, p-hydroxybenzoate for PobR, and protocatechuate for PcaU. [Regulatory functions, DNA interactions].	9.50422e-106
NZ_CP047135.1\|WP_128096870.1\|1564712_1565243_-\|N-acetyltransferase	gnl\|CDD\|224168	COG1247, COG1247, Sortase and related acyltransferases [Cell envelope biogenesis, outer membrane].	8.64363e-58
NZ_CP047135.1\|WP_159496523.1\|1542481_1543258_+\|3-oxoadipate-enol-lactonase	gnl\|CDD\|131480	TIGR02427, b-ketoadipate_enol-lactone_hydrolase, 3-oxoadipate enol-lactonase. Members of this family are 3-oxoadipate enol-lactonase. Note that the substrate is known as 3-oxoadipate enol-lactone, 2-oxo-2,3-dihydrofuran-5-acetate, 4,5-Dihydro-5-oxofuran-2-acetate, and 5-oxo-4,5-dihydrofuran-2-acetate. The enzyme the catalyzes the fourth step in the protocatechuate degradation to beta-ketoadipate and then to succinyl-CoA and acetyl-CoA. 4-hydroxybenzoate, 3-hydroxybenzoate, and vanillate all can be converted in one step to protocatechuate. This enzyme also acts in catechol degradation. In genomes that catabolize both catechol and protocatechuate, two forms of this enzyme may be found. All members of the seed alignment for this model were chosen from within protocatechuate degradation operons of at least three genes of the pathway, from genomes with the complete pathway through beta-ketoadipate. [Energy metabolism, Other].	2.37083e-110
NZ_CP047135.1\|WP_128097386.1\|1547464_1548001_+\|adenine-phosphoribosyltransferase	gnl\|CDD\|235028	PRK02304, PRK02304, adenine phosphoribosyltransferase; Provisional.	5.38574e-81
NZ_CP047135.1\|WP_128097390.1\|1554108_1554570_-\|cytochrome-c	gnl\|CDD\|225418	COG2863, COG2863, Cytochrome c553 [Energy production and conversion].	1.14813e-19
NZ_CP047135.1\|WP_159496526.1\|1544730_1547157_-\|membrane-bound-PQQ-dependent-dehydrogenase,-glucose/quinate/shikimate-family	gnl\|CDD\|274418	TIGR03074, PQQ_membr_DH, membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.	0
NZ_CP047135.1\|WP_159496534.1\|1559840_1562930_+\|AcrB/AcrD/AcrF-family-protein	gnl\|CDD\|223911	COG0841, AcrB, Cation/multidrug efflux pump [Defense mechanisms].	0
NZ_CP047135.1\|WP_128096869.1\|1565262_1566150_-\|carbon-nitrogen-hydrolase	gnl\|CDD\|143597	cd07573, CPA, N-carbamoylputrescine amidohydrolase (CPA) (class 11 nitrilases). CPA (EC 3.5.1.53, also known as N-carbamoylputrescine amidase and carbamoylputrescine hydrolase) converts N-carbamoylputrescine to putrescine, a step in polyamine biosynthesis in plants and bacteria. This subgroup includes Arabidopsis thaliana CPA, also known as nitrilase-like 1 (NLP1), and Pseudomonas aeruginosa AguB. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 11. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer; P. aeruginosa AugB is a homohexamer, Arabidopsis thaliana NLP1 is a homooctomer.	4.12122e-176
NZ_CP047135.1\|WP_159496529.1\|1551141_1552044_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|182768	PRK10837, PRK10837, putative DNA-binding transcriptional regulator; Provisional.	1.77992e-99
NZ_CP047135.1\|WP_159496524.1\|1543305_1543698_+\|4-carboxymuconolactone-decarboxylase	gnl\|CDD\|131478	TIGR02425, putative_gamma-carboxymuconolactone_decarboxylase, 4-carboxymuconolactone decarboxylase. Members of this family are 4-carboxymuconolactone decarboxylase, which catalyzes the third step in the catabolism of protocatechuate (and therefore the fourth step in the catabolism of para-hydroxybenzoate, of 3-hydroxybenzoate, of vanillate, etc.). Most members of this family are encoded within protocatechuate catabolism operons. This protein is sometimes found as a fusion protein with other enzymes of the pathway, as in Rhodococcus opacus, Streptomyces avermitilis, and Caulobacter crescentus. [Energy metabolism, Other].	4.07299e-68
NZ_CP047135.1\|WP_159496536.1\|1566884_1567922_-\|agmatine-deiminase	gnl\|CDD\|377332	pfam04371, PAD_porph, Porphyromonas-type peptidyl-arginine deiminase. Peptidyl-arginine deiminase (PAD) enzymes catalyze the deimination of the guanidino group from carboxy-terminal arginine residues of various peptides to produce ammonia. PAD from Porphyromonas gingivalis (PPAD) appears to be evolutionarily unrelated to mammalian PAD (pfam03068), which is a metalloenzyme. PPAD is thought to belong to the same superfamily as aminotransferase and arginine deiminase, and to form an alpha/beta propeller structure. This family has previously been named PPADH (Porphyromonas peptidyl-arginine deiminase homologs). The predicted catalytic residues in PPAD are Asp130, Asp187, His236, Asp238 and Cys351. These are absolutely conserved with the exception of Asp187 which is absent in two family members. PPAD is also able to catalyze the deimination of free L-arginine, but has primarily peptidyl-arginine specificity. It may have a FMN cofactor.	5.3071e-149
NZ_CP047135.1\|WP_159496535.1\|1563487_1564720_-\|TraB-family-protein	gnl\|CDD\|224828	COG1916, COG1916, Uncharacterized homolog of PrgY (pheromone shutdown protein) [Function unknown].	5.65741e-134
NZ_CP047135.1\|WP_159496530.1\|1552080_1553964_+\|ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|236861	PRK11147, PRK11147, ABC transporter ATPase component; Reviewed.	0
NZ_CP047135.1\|WP_159496531.1\|1554579_1554984_-\|c-type-cytochrome	gnl\|CDD\|225418	COG2863, COG2863, Cytochrome c553 [Energy production and conversion].	1.0821e-12
NZ_CP047135.1\|WP_159496528.1\|1549962_1551039_-\|YeiH-family-putative-sulfate-export-transporter	gnl\|CDD\|225411	COG2855, COG2855, Predicted membrane protein [Function unknown].	2.96547e-105
NZ_CP047135.1\|WP_128097387.1\|1548225_1549602_-\|ATP-dependent-RNA-helicase-DbpA	gnl\|CDD\|236977	PRK11776, PRK11776, ATP-dependent RNA helicase DbpA; Provisional.	0

>NZ_CP047135.1|WP_159496530.1|1552080_1553964_+|ATP-binding-cassette-domain-containing-protein
MPLITLQNVDFSVGGPLLLEKAELSIEPGERIALIGRNGAGKSTLLKLLSGDHKPDDGEVRVQQGVRITRLEQEVPHGAAGSVFDVVADGLGELGQWLAEFHHLSMAEEFDGDALSAVQAKIDAANGWGLDQRVSETLTKLDLDGDAEFARLSGGMKRRVLLGRALVSSPDLLLLDEPTNHLDIEAIDWLEMFLKNWNGSVVFVTHDRRFLRALATRIVEIDRGQVTSWPGDWANYERRREERLNAQAQENARFDKLLAQEEIWIRQGIKARRTRDEGRVRRLKAMRNDRSQRRELGGNVRMEAAQAENSGKKVIDVKDISFAFGERVMVKDFSTVILRGDRIGLIGPNGSGKTTLLKLLLGDLQPQSGEVRAGTNLQIAYFDQYRAVLREDWTAIENVAEGRDFIEFNGKRKHVHAYLQDFLFSPERARAPITRLSGGERNRLLLAKLFAQPSNLLVMDEPTNDLDVETLELLEELLSDYSGTLLLVSHDRDFLDNVVTSTMVMEGDGVVGEYIGGYSDWQRQAERVAAAAAAPVGAGKPAAPVAAAPAEPAAAKRKLSYKDARELEQLPLKIETLEKDVEGLTAAMNDPAFYQRSAPDMAAHNAKLAKVQAELDAAYARWEELDA
>NZ_CP047135.1|WP_159496529.1|1551141_1552044_+|LysR-family-transcriptional-regulator
MRISLRQWQVFVAVADIGTTAAAGERLALSQSATSAALNELEARLPSPLFDRIGRRLILNAQGRALLDPARGLLAAATDLEAMAGAGRPASATGVPLQLRIGASTTIGNYLLPARVAALLADQPNVDVDLRIGNSAEVVAAVQRLEVDLGLIEGPCHESGLNVLPWQQDALVIVAAAASPLGARPDLAELSAARWLLREPGSGTREAVEQALLPHLHHFARAMQLGSTEAIKQAAAAGLGVACLSRHAVADLVALGSLRILDAALPPLSRQLWVVHHPGKHVPPPLRALLGLAADAFASG
>NZ_CP047135.1|WP_159496528.1|1549962_1551039_-|YeiH-family-putative-sulfate-export-transporter
MNASRPTLYLPTLAQRWRGRLPGLLLAGGVALAAMALATLPWLQAHGISALTLAIVLGIALGNSVYPRMAPQAAAGVGFSKQWLLRAGIVLYGLRLTFQDIGQVGVGGVLIDALVLTSTFALAWWAGTRWFGIDRESALLIGAGSAICGAAAVMAAEPVVRGRAEQVTVAVSTVVVFGTLAMFLYPALYQLTLAHGVMPMSEQAYGVFTGSTVHEVAQVVAAGRAVSEGAADTAVIAKMVRVMMLAPFLVALSLLLARGGRAQAGATRVKIVVPWFAFGFVAVAGFNSLHLLPAAWVALAIDVDTVLLAMAMAALGLTTHASALRQAGMKPLLLALLLFGWLLAGGLGINVGVHALLG
>NZ_CP047135.1|WP_159496527.1|1549650_1549935_-|hypothetical-protein
MKRERVPPVDRRRLHIPYRQVLERYGAIDDAEDDLLDLLQRVLGPEVVVRWEQDVSHPNPWFHTLILDVSDGPGEFSHAQHTALMAGLRALDLA
>NZ_CP047135.1|WP_128097387.1|1548225_1549602_-|ATP-dependent-RNA-helicase-DbpA
MNEFSELPLSASLAAGIDALGYTQMTPVQAQSLPAILERRDLIAQAPTGSGKTAAFGLGLLQALDPSVIRAQALVLCPTRELADQVGKQIRKLATGIPNLKLVVLTGGMPLGPQLASLEAHDPHVVVGTPGRIQELGRKRVLKLGGVTTLVLDEADRMLDMGFEEPIREIAGRTSKDRQTLLFSATYPDEIREIARVLLRDPVEVTVQGADNAPAIRHLFCEVDLASKQKALAGLLLKYTPESTVVFCNTRRDVDDVANSLQQFGFSALPLHGEMEQRDRDEVLVRFANRSCNVLVASDVAARGLDVQDLAAVINYELPTDIETYEHRVGRTGRAGASGLAVSLVTGRERNRADALEAAQGKPLDWQKTPLATARPAVLPQAAMETLRIDGGKTDKLRPGDILGALTGEAGLSAKVIGKIDIYATRSYVAIAREQVGRAIDRLEAGKIKGRRFRVRRM
>NZ_CP047135.1|WP_128097386.1|1547464_1548001_+|adenine-phosphoribosyltransferase
MTESSATPAWAGRLRDIADFPKPGILFKDIMPLLANGDDFAAAIDAMVQPWRTANLQAVMGIESRGFILGAAMARVLGVGFVPVRKPGKLPGRTLKQEYTLEYRTDTIEVHADALPAGARVLVVDDVLATGGTLLAALSLARQLQVEVVGAAVLVELAGLGGRERWDGDVPLLANLVY
>NZ_CP047135.1|WP_159496526.1|1544730_1547157_-|membrane-bound-PQQ-dependent-dehydrogenase,-glucose/quinate/shikimate-family
MDENTKPSALCRTLVVLIGIVVMLFGLVLLVGGVRLAQLGGSWYFLLMGAASLVAGGLLALRRPLGALLYGVAFVATVAWALADAGLEFWPLVSRLVMPAVLATLVALTWPVLRRSRGQRPGRAAYGVAALLLVGLLGTAVSAFQPRPVVTAKGAAPAVVPVAKGSEQRDWQHWGNTTAGTRFAALDQITPANITQLQVAWTAHTGDVPQSDGFGAEDQNTPLQIGDTLYLCTPHNQVVALDVDSGKQRWAFDPKASAPNWQRCRGLGYFDAGQPLVGAPTVAAAPSPAVPATVAAAPAPALCEKRILMTSIDARLFALDATTGAPCPDFGEAGVVDLKRGMGEIKPGFYTLTAAPLVAGELVIVGGRVADNIEVNEPSGVVRAYNVRSGALAWVWDLSRETPDVPLDPSIHYTRATPNVWTSMAYDPQLGLVYLPTGNTTPDQWAGERTPQDDKYSSAVVALDVATGKERWVYQTVHHDLWDYDLPAQPTLTDVPDGKGGTLPALLQITKAGQVFMLNRATGQPITEVRDIAAPQGNAAGERYSPTQRLSVGLPQIGAQTLTESDMWGATPIDQMLCRIQFKGFRYDGMFTPPGEDLALQWPGSLGGMNWGSASVDPTTGYLFVNDMRLGLWTKLIPRAEMTTGAGGVEMGAASQTGTPYGSLRDRFLSKLGIPCQKPPFGTMSAINLATHELVWQVPVGTVKDTGPMGIKMRLPIPIGMPTLGGSLATQSGLLFFAGTQDYYLRAYDSRTGKEVWKARMPVGSQGTPITYVSPKTGRQYVVISAGGARQSPDRGDYVIAYALPARR
>NZ_CP047135.1|WP_159496525.1|1543780_1544635_-|helix-turn-helix-domain-containing-protein
MSAVPPSRRPKRAPAPPQDRGLSHELMQLIQDNQGDPDFMTSLGRGLVVLSVFSQHPREVTMSQISTETGISRAAVRRVLYTLEKLGYVGEQGRGFVLLPRVLGMGGAYVASSSMTAAAQPVLDALRDDVHESCSLGVLDGDDVLYVARAETVRIMSIGLRAGSRLPAYCTSMGRVLLAALPHDTLESYLERNPLRPRTERTVTRMDEFLDTLDRVRRDGVALVDQELEIGLRSIAVPVHARSGAVVGALNIGTQAGRVSLGVMQSQLLPRLREAAQRLGTLLH
>NZ_CP047135.1|WP_159496524.1|1543305_1543698_+|4-carboxymuconolactone-decarboxylase
MDEQERYEAGLTVRRAVLGEAHVERSLQARTDFTHEFQDFITRTAWGTVWTRDGLPRHTRSLLTIVMMVALGHDEEFKLHIRAARNNGVTPDEIKEVLLQAAIYCGVPAANHAFALAKPILEEQANDPPR
>NZ_CP047135.1|WP_159496523.1|1542481_1543258_+|3-oxoadipate-enol-lactonase
MQFLELDTHRLHYRIDGPDDAPLLTFCNSLGTDLHMWDPQVAALSKRFRILRYDRRGHGHSSAPPGLYGVADLGADVLALWDHLRVARSHFCGLSIGGLTGQWLGVHAGTRLHSLTVAATAAKIGTAESWDARIAQVRAHGLVPLREGTAERWFTPAFTAAEPARVEDILQRFVATTVAGYVGCCHAVATADFRDSLAQIRVPTLAIAGDDDPVCPPADLHAIARGVAHGHAVTVPGRHICNIESADAFTAALTAHLT
>NZ_CP047135.1|WP_128097390.1|1554108_1554570_-|cytochrome-c
MTKAAPFKRYAIALSVALLLAACSQSQVENSADSAADPGHASGEHGSGSSAGLPTGRIAAGEARAQVKGKATGQSCIDCHGADGNKPIDATYPKLGGQYGDYLAHALQAYRAGDRQHALMTPQATDLSDQDIADLAAYFGSRPTQLRDLHGLK
>NZ_CP047135.1|WP_159496531.1|1554579_1554984_-|c-type-cytochrome
MRPQPLAACLLAVLLPLGAAAQAATAPAVPAAPAVPAPAAAPPAPAAPAGLTGSFDNGRVLAYTCQGCHGITGYKNAYPSYRVPKIGGQTQQYLSQALSEYRQGKRKHPTMQAQSMSFSEQEIADLAVYLSTVK
>NZ_CP047135.1|WP_159496532.1|1555189_1556338_+|efflux-RND-transporter-periplasmic-adaptor-subunit
MSRNSFLHGRTGTCAAALLITTSLLLSGCGAGAGSADAQAAEKDPKAEKAVDAVPVEAVAASRRAVAASYTGTAALEARAESQVVAKTSGVALAVLVEEGQAVRAGQPLVRLDPDRARLAVAQSEAVMRKLENNYQRAQKLIGQQMVSAADVDQIKYDVENARAQYRLATLELSYTTVVAPISGVIASRSIKTGNFVQINTPIFRIIDNSRLEATLNVPERELATLRAGQPVTLVADALPGKSFPGVVDRISPVVDAGSGTFRVVSGFGEDAQGLQPGMFGRIRIDYDQRADALVVPRLALLDDGAPAVFRVRAGKVARVPVKLGYAEGPWVEIREGLAEGDQVVTAGKVALRDGTAVQVIGAKPATATASAQPAKKAESRQ
>NZ_CP047135.1|WP_159496533.1|1556334_1559844_+|MMPL-family-transporter
MTSAGNDHGNDPHHGDRPGAQGGGLVEFATRRRVTIAMCTVTLMLFGVIALGNLKVNLLPDLSYPTLTVRTEYTGAAPTEIETLISEPVEEAVGVVKNLRKLKSVSRTGQSDVVLEFAWGTNMDQASLEVRDKMEALNLPLEAKAPVLLRFNPSTEPIMRLVISAKADAATDADAVRQLTELRRYADEDLKKKLEPVAGVAAVKVGGGLEDEIQVDIDQQKLAQLNLPIDNVIKRLKEENINISGGRLEEGSQRFLVRTVNQFADLEDIRNLLVTTQGSNGNAADAAMQQMFAIAASTGSDAAVAAASAAQSASSSSSSTIANGVPVRLKDVASVRQGYKEREAIIRLGGKEAVELAIYKEGDANTVATAEALRAKLEQIKAQIPGDAQLTTIEDQSRFIEHAISDVKKDAVIGGLLAILIIFLFLRDGWSTFVISLSLPVSIITTFFFMGQMGLSLNVMSLGGLALATGLVVDDSIVVLESIAKARERGLGILQAAIAGTREVSMAVVASTLTTIAVFLPLVFVDGIAGQLFRDQALTVAIAIAISLLVSMTLIPMLSSLKGRPPLAFPEEAAHAAWQPEKRWLKPVASGRRGIGALVRWACFGVAWAIIRVWRGVVAVVGPVMRKASDVAMKPYAGAERGYLKLLPGALHHPGKVLGCAALAFVATMALVPMLGADLIPQLAQDRFEMTAKLPAGTPLKQTDALVRELQLAHAKDDQIASLYGVSGSGTRLDASPTESGENIGKLTVVMAGGGDARTEAAITERLRDSMQQHPGVQVDFARPALFSFSTPLEVELRGQDMATLERAGQALAAMLRNNPHYADVKSTVEEGFPEIQIRFDQERAGALGLTTRQIADVVVKKVRGDVATRYSFRDRKIDVLVRAQEGDRASVESIRRLIVNPGSSRPVTLDAVAEVVATNGPSEIHRADQTRVAVVSANLRDIDLGGAVREVHDMVAKEPLGAGVGMHIGGQGEELAESARSLIFAFGLAIFLVYLVMASQFESLLHPFVILFTIPLALVGAILALMLTGKPISVVVFIGLILLVGLVTKNAIILIDKVNQLREAGVPKQEALVEGARSRLRPIIMTTLCTLFGFLPLAVAMGEGAEVRAPMAITVIGGLLVSTLLTLLVIPVVYDLLDRRGDAYYRERGRKHAGHVEPAGSGAAQEPA
>NZ_CP047135.1|WP_159496534.1|1559840_1562930_+|AcrB/AcrD/AcrF-family-protein
MSIAEFSIRRPITTIMCFVSLVVVGLIASFRLPLEALPDISAPFLFVQVPYTGSTPEEVERNIIRPTEEALATMTGIKRMRSSATSEGASIFIEFTDWDRDIAIAASDARERIDAIRSDLPDDLQRYNVFKWSSSDEPVLKVRLASSTDLTGAYDMLDREFKRRIERIPGVARVNISGAPPNEVEIAISPDRLTAHNLSINELSDRLRTLNFSISAGQIDDNGQRVRIQPVGEITDLQELRDLVIDTKGLRLGDIAEIRLKPTRMNYGRRLDGNPAVGLDIYKERSANLVEVSRAALAEVEAIRTQPSMRDVQIKVINNQGKTVTSSLLELAEAGAVGLLLSVTVLFFFLRHWPSTLMVTLAIPICFVITLGFMYFAGVTLNILTMMGLLLAVGMLVDNAVVVVESIYQERERMPDQPRLASIIGTRNVAIALSAGTLCHCIVFVPNLFGETNNISIFMAQIAITISVSLLASWLVAVSLIPMLSARMQTPKLVHSETGVIARLQRRYAKVLQWTLEHRGWSVFGILMVVLISLVPMKLTKIDMFGGEGGKDIFIGYNWKGAYTYSQMSEEVARVERYLDENREKLHITQVYSWYSEQEGSSTTVTLDEKHADNLPAVQEALRKGLPRSARTDYIVGNQGGDGGGGGGNQSVQVQLVGDSTKMLQEIGEDVVPLLARRKELRDVRIDNGEKGSELSIHVDRERAAAFGFNAEQVASFVGLALRGAPMREFRRGDSEVPVWVRFAGAEQSSPEDLASFTVRTGDGRSVPLLSLVDVSIKPSATQVGRTNRQTTLTIKANLAEKVTAPEARKAMEETLTPMSFPAGYTFTFDGGDYGDDNEAMQQMLFNLIIALVMIYVVMAAVFESLLFPAAIMSGVLFSIFGVFWLFWITGTSFGIMSFIGILVLMGVVVNNGIVMIEHINNLRRRGMGRTQALVEGSRERLRPIMMTMGTAILAMVPISLTDTQLLGDGPPYYPMARAIAGGLAFSTVVSLLFLPTIYAMLDDMSSAVSRIIRRARGLPAKGEATTPA
>NZ_CP047135.1|WP_159496535.1|1563487_1564720_-|TraB-family-protein
MNEMTEPQLDDTGDTLFAGQPVRVVERDGVRYTLLGTAHVSQASVEAVERAIGSGRFDAVAVELDAQRLQALTNPDALAKLDLVEVIRKGRVALFAANLALAAYQRRLAEQLGIEPGAELKRAVTLANEHNLPVHLIDREVGLTFKRASQRLGFFGRIKLVMGLGAGLFASDEVGEDEIEKLKQGDMLEASFGEFASESPALYETIIGERDRYMATRLREVHDPAQREVLAVVGAGHLAGLAKYLETDTDAPAPLRESLEAVPKKRNIPWITLIILAVVLAGIAVGFYRGGLGMGGELLLTWAMYTGGLAGLGCLLAGSHPLSILTAIVVAPFKPFRLSIPTGAFAALVETRLRKPAYEDFLKLRDDAQSVKGWYRNRVTRVVLTFMLTNLGSMLGLWLTGLQVWGKVAG
>NZ_CP047135.1|WP_128096870.1|1564712_1565243_-|N-acetyltransferase
MTVQLRDARDTDIDAITAIYAVEVTDLVNTYEYDVPDAAEMQRRMHDIVGRGFPYIVAEVDGQVAGYAYANTYRGRIAYQWTVENSVYVDAAFQGRGVGTALMQGLIDACVARGYRQMVAVIGEPTNTASIKLHERFGFHTVGIFRGLGRKHGRWLDTVQMQRALGDGADSAPSNE
>NZ_CP047135.1|WP_128096869.1|1565262_1566150_-|carbon-nitrogen-hydrolase
MSSRHTLSVALIQERNHGDAAANLAVIETRVAEAAAQGAKLILLQELHNGAYFCQHESVDEFDLAEPIPGPSTERLGALAKKHGVVIVGSLFERRAAGLYHNTAVVFEKDGTLLGKYRKMHIPDDPGFYEKFYFTPGDLGFTPIDTSVGRLGVLVCWDQWYPEAARLMALAGAELLLYPTAIGWDPDDQQDEQGRQRDAWVLSHRGHAVANGVPVLSCNRVGHEASPLGASGIQFWGNSHVLGPQGEFIAEAGGEPTVLLCDVDLQRSEHVRRIWPFLRDRRIDAYGDLLKRYID
>NZ_CP047135.1|WP_159496536.1|1566884_1567922_-|agmatine-deiminase
MNDTLRFPAEWETQSAILIAWPHADTDWADRLGDVEDTYIALVAAITRFQPVLIIVADDDLEVYADARLRSNRIDMDRVRFVTAQYDDTWLRDSGPITLKRADGGFRLLDFRFTGWGGKFDASLDDQLVGVLHAAGVFAPNAEVQSIPFALEGGGIETDGAGTLLTTWQCLHERHPDRERASLSTDLAGWLQQDRVLWLDHGYLEGDDTDAHIDTLARFASVDSIVYQACDDSSDSHFAELQAMGNELAALRTADGAPYRLFPLPWAQPVIDDGRRLAASYANYLILNGAVLMPAYGDVADEAARAVLAQAYPDREIVPVPCRSLIWQNGSLHCITMQLPEGLLA
>NZ_CP047135.1|WP_038688813.1|1567971_1568298_-|hypothetical-protein
MKRYLTTLPLLALLACASAHADTLLIDRSQEKPATALPVRGQSMQQVQSQFGDPGERLEPRGGQKRQWPTINRWVYPQFTVYFEKQKVIDVVANKADANEVGPKPPIR

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Crispr_ID: NZ_CP047135_7

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP047135_7

1734511-1734616

Orphan

Consensus_repeat	Method
GCAGCTGACCAACGGTCAGCTCTACC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP047135_7

>merge|NZ_CP047135|7|1734511-1734616|CRISPRCasFinder
GCAGCTGACCAACGGTCAGCTCTACCGGCTTGCGTCACGAGCAGCTGACCAACGGTCAGCTCTACCGGTTTGCAGCACAGGCAGCTGACCAACGGTCAGCTCTACC

>NZ_CP047135|7|7|1734511-1734616|CRISPRCasFinder
GCAGCTGACCAACGGTCAGCTCTACC	GGCTTGCGTCACGAGCAGCTGACCAACGGTCAGCTCTACCGGTTTGCAGCACAG
GCAGCTGACCAACGGTCAGCTCTACC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP047135.1\|WP_159496641.1\|1730128_1733242_+\|multidrug-efflux-RND-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|273335
NZ_CP047135.1\|WP_159496650.1\|1743207_1743462_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP047135.1\|WP_159496646.1\|1738702_1739596_-\|hydroxymethylglutaryl-CoA-lyase	unknown	unknown	gnl\|CDD\|163676
NZ_CP047135.1\|WP_159496639.1\|1724492_1726310_+\|DUF4105-domain-containing-protein	unknown	unknown	gnl\|CDD\|379156
NZ_CP047135.1\|WP_159496643.1\|1733732_1734467_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|378282
NZ_CP047135.1\|WP_159499326.1\|1728224_1729397_+\|efflux-RND-transporter-periplasmic-adaptor-subunit	unknown	unknown	gnl\|CDD\|169982
NZ_CP047135.1\|WP_128095852.1\|1721317_1722559_-\|phosphoglycerate-dehydrogenase	unknown	unknown	gnl\|CDD\|236985
NZ_CP047135.1\|WP_159496638.1\|1722745_1724134_+\|FAD-binding-protein	unknown	unknown	gnl\|CDD\|223354
NZ_CP047135.1\|WP_159496644.1\|1735289_1736060_-\|SDR-family-NAD(P)-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|187629
NZ_CP047135.1\|WP_128098063.1\|1741097_1741352_+\|ferrous-iron-transport-protein-A	unknown	unknown	gnl\|CDD\|377199
NZ_CP047135.1\|WP_128095854.1\|1724193_1724493_+\|DUF2388-domain-containing-protein	unknown	unknown	gnl\|CDD\|370532
NZ_CP047135.1\|WP_159496645.1\|1736138_1738706_-\|EAL-domain-containing-protein	unknown	unknown	gnl\|CDD\|236645
NZ_CP047135.1\|WP_159496648.1\|1740184_1740973_-\|enoyl-CoA-hydratase/isomerase-family-protein	unknown	unknown	gnl\|CDD\|235664
NZ_CP047135.1\|WP_128098065.1\|1734656_1735223_-\|elongation-factor-P-like-protein-YeiP	unknown	unknown	gnl\|CDD\|179863
NZ_CP047135.1\|WP_159496642.1\|1733243_1733633_+\|nuclear-transport-factor-2-family-protein	unknown	unknown	gnl\|CDD\|379639
NZ_CP047135.1\|WP_159496651.1\|1743805_1744387_-\|flavodoxin-family-protein	unknown	unknown	gnl\|CDD\|225158
NZ_CP047135.1\|WP_159496649.1\|1741348_1743208_+\|ferrous-iron-transport-protein-B	unknown	unknown	gnl\|CDD\|223447
NZ_CP047135.1\|WP_159499324.1\|1727351_1728098_-\|response-regulator	unknown	unknown	gnl\|CDD\|223816
NZ_CP047135.1\|WP_159496647.1\|1739787_1740174_-\|VOC-family-protein	unknown	unknown	gnl\|CDD\|319923
NZ_CP047135.1\|WP_159496640.1\|1726287_1727352_-\|HAMP-domain-containing-protein	unknown	unknown	gnl\|CDD\|182539

Protein	Function_ID	Function_description	E-value
NZ_CP047135.1\|WP_159496641.1\|1730128_1733242_+\|multidrug-efflux-RND-transporter-permease-subunit	gnl\|CDD\|273335	TIGR00915, Probable_aminoglycoside_efflux_pump, The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family. Proteins scoring above the trusted cutoff (1000) form a tight clade within the RND (Resistance-Nodulation-Cell Division) superfamily. Proteins scoring greater than the noise cutoff (100) appear to form a larger clade, cleanly separated from more distant homologs that include cadmium/zinc/cobalt resistance transporters. This family is one of several subfamilies within the scope of pfam00873. [Cellular processes, Toxin production and resistance, Transport and binding proteins, Unknown substrate].	0
NZ_CP047135.1\|WP_159496646.1\|1738702_1739596_-\|hydroxymethylglutaryl-CoA-lyase	gnl\|CDD\|163676	cd07938, DRE_TIM_HMGL, 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain. 3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".	8.56106e-166
NZ_CP047135.1\|WP_159496639.1\|1724492_1726310_+\|DUF4105-domain-containing-protein	gnl\|CDD\|379156	pfam13387, DUF4105, Domain of unknown function (DUF4105). This is a family of uncharacterized bacterial proteins. There is a highly conserved histidine residue and a well-conserved NCT motif.	1.72775e-20
NZ_CP047135.1\|WP_159496643.1\|1733732_1734467_+\|hypothetical-protein	gnl\|CDD\|378282	pfam09864, MliC, Membrane-bound lysozyme-inhibitor of c-type lysozyme. Lysozymes are ancient and important components of the innate immune system of animals that hydrolyze peptidoglycan, the major bacterial cell wall polymer. Various mechanisms have evolved by which bacteria can evade this bactericidal enzyme, one being the production of lysozyme inhibitors. MliC (membrane bound lysozyme inhibitor of c-type lysozyme) of E. coli and Pseudomonas aeruginosa, possess lysozyme inhibitory activity and confer increased lysozyme tolerance upon expression in E. coli. Structural analyses show that the invariant loop of MliC plays a crucial role in the inhibition of the lysozyme by its insertion into the active site cleft of the lysozyme, where the loop forms hydrogen and ionic bonds with the catalytic residues.	3.23922e-10
NZ_CP047135.1\|WP_159499326.1\|1728224_1729397_+\|efflux-RND-transporter-periplasmic-adaptor-subunit	gnl\|CDD\|169982	PRK09578, PRK09578, MexX/AxyX family multidrug efflux RND transporter periplasmic adaptor subunit.	1.42989e-78
NZ_CP047135.1\|WP_128095852.1\|1721317_1722559_-\|phosphoglycerate-dehydrogenase	gnl\|CDD\|236985	PRK11790, PRK11790, phosphoglycerate dehydrogenase.	0
NZ_CP047135.1\|WP_159496638.1\|1722745_1724134_+\|FAD-binding-protein	gnl\|CDD\|223354	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion].	4.12409e-123
NZ_CP047135.1\|WP_159496644.1\|1735289_1736060_-\|SDR-family-NAD(P)-dependent-oxidoreductase	gnl\|CDD\|187629	cd05371, HSD10-like_SDR_c, 17hydroxysteroid dehydrogenase type 10 (HSD10)-like, classical (c) SDRs. HSD10, also known as amyloid-peptide-binding alcohol dehydrogenase (ABAD), was previously identified as a L-3-hydroxyacyl-CoA dehydrogenase, HADH2. In fatty acid metabolism, HADH2 catalyzes the third step of beta-oxidation, the conversion of a hydroxyl to a keto group in the NAD-dependent oxidation of L-3-hydroxyacyl CoA. In addition to alcohol dehydrogenase and HADH2 activites, HSD10 has steroid dehydrogenase activity. Although the mechanism is unclear, HSD10 is implicated in the formation of amyloid beta-petide in the brain (which is linked to the development of Alzheimer's disease). Although HSD10 is normally concentrated in the mitochondria, in the presence of amyloid beta-peptide it translocates into the plasma membrane, where it's action may generate cytotoxic aldehydes and may lower estrogen levels through its use of 17-beta-estradiol as a substrate. HSD10 is a member of the SRD family, but differs from other SDRs by the presence of two insertions of unknown function. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.	3.2517e-111
NZ_CP047135.1\|WP_128098063.1\|1741097_1741352_+\|ferrous-iron-transport-protein-A	gnl\|CDD\|377199	pfam04023, FeoA, FeoA domain. This family includes FeoA a small protein, probably involved in Fe2+ transport. This presumed short domain is also found at the C-terminus of a variety of metal dependent transcriptional regulators. This suggests that this domain may be metal-binding. In most cases this is likely to be either iron or manganese.	9.23818e-17
NZ_CP047135.1\|WP_128095854.1\|1724193_1724493_+\|DUF2388-domain-containing-protein	gnl\|CDD\|370532	pfam09498, DUF2388, Protein of unknown function (DUF2388). This family consists of small hypothetical proteins, about 100 amino acids in length. The family includes five members (three in tandem) in Pseudomonas aeruginosa PAO1 and in Pseudomonas putida (strain KT2440), four in Pseudomonas syringae DC3000, and single members in several other Proteobacteria. The function is unknown.	3.78525e-16
NZ_CP047135.1\|WP_159496645.1\|1736138_1738706_-\|EAL-domain-containing-protein	gnl\|CDD\|236645	PRK10060, PRK10060, cyclic di-GMP phosphodiesterase.	7.52204e-109
NZ_CP047135.1\|WP_159496648.1\|1740184_1740973_-\|enoyl-CoA-hydratase/isomerase-family-protein	gnl\|CDD\|235664	PRK05995, PRK05995, enoyl-CoA hydratase; Provisional.	6.02327e-102
NZ_CP047135.1\|WP_128098065.1\|1734656_1735223_-\|elongation-factor-P-like-protein-YeiP	gnl\|CDD\|179863	PRK04542, PRK04542, elongation factor P; Provisional.	5.88073e-110
NZ_CP047135.1\|WP_159496642.1\|1733243_1733633_+\|nuclear-transport-factor-2-family-protein	gnl\|CDD\|379639	pfam14534, DUF4440, Domain of unknown function (DUF4440).	3.07739e-05
NZ_CP047135.1\|WP_159496651.1\|1743805_1744387_-\|flavodoxin-family-protein	gnl\|CDD\|225158	COG2249, MdaB, Putative NADPH-quinone reductase (modulator of drug activity B) [General function prediction only].	3.88983e-39
NZ_CP047135.1\|WP_159496649.1\|1741348_1743208_+\|ferrous-iron-transport-protein-B	gnl\|CDD\|223447	COG0370, FeoB, Fe2+ transport system protein B [Inorganic ion transport and metabolism].	0
NZ_CP047135.1\|WP_159499324.1\|1727351_1728098_-\|response-regulator	gnl\|CDD\|223816	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription].	4.8024e-71
NZ_CP047135.1\|WP_159496647.1\|1739787_1740174_-\|VOC-family-protein	gnl\|CDD\|319923	cd07262, VOC_like, uncharacterized subfamily of vicinal oxygen chelate (VOC) family. The vicinal oxygen chelate (VOC) superfamily is composed of structurally related proteins with paired beta.alpha.beta.beta.beta motifs that provide a metal coordination environment with two or three open or readily accessible coordination sites to promote direct electrophilic participation of the metal ion in catalysis. VOC domain is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.	1.74751e-48
NZ_CP047135.1\|WP_159496640.1\|1726287_1727352_-\|HAMP-domain-containing-protein	gnl\|CDD\|182539	PRK10549, PRK10549, two-component system sensor histidine kinase BaeS.	6.27918e-56

>NZ_CP047135.1|WP_159496643.1|1733732_1734467_+|hypothetical-protein
MRASPWLFSLAIATGLSACQPAQRAEGNASEAGAGEAPPPMAAATSDERSYAFQCGDVAVQATYRGQDSASVVVEGRTYPMASEPAASGARYGDGQGNVFWTKGTTEGTLQLKGEPDRTCTGSGEQGAAAPLPTAQDATAAGFRATGNEPGWLAEVAAGTTPHLRVETDYGQRTLEIAAPTQGKDGWSGKAADGTPVKLTFQRTVCQDDMSGQAFGATAMLTVGARQYHGCGDFAGAPALAAKP
>NZ_CP047135.1|WP_159496642.1|1733243_1733633_+|nuclear-transport-factor-2-family-protein
MSTTVLEHTIATAEAQVLQLLLAQDVDALQAWLSPSLFFSDGAGQWLGAHPFLTAWSTGQLRISALEQGAVEPLVCGQLTLVSSDVRLRYADAGGEHARALRLLRVWATASNTAGVHLLSIGLLPPRLV
>NZ_CP047135.1|WP_159496641.1|1730128_1733242_+|multidrug-efflux-RND-transporter-permease-subunit
MPQFFIERPVFAWVLAIFVVLAGALAIPRLAIERYPSVAPPSISIYASYPGASAQTMNDAVVGLIERELSGVKHLLYFSSSTDTSGEASITATFRPGTDPELAQVDVQNRIKAIESRLPQAVRQNGLGVEAADSGFLMLVGLRSTDGRLDEVALSDYMARNIVEELRRIEGVGRVQLFGAERAMRIWVDPAQLVAYRLTLGDLTTAISEQNAQIAPGRVGDSPAVPGQRVTIPLTVEGQLSTPEAFAAIVLRANPDGSRVVIGDVARVELGAESYAWSTRENGAPATAAAIQLSPGANAVKVAGAVRARMAELEPTLPVGMHATVPFDTAPFVAISIQKVLITLVEAMVLVFAVMYLFLQNIRYTLIPAIVAPIALLGTFAVMLAAGFSINVLTMFGMVLAIGIIVDDAIVVVEGVERIMAEEGLPPREATAKAMKELTGAVIGITLVLTAVFIPMALADGSVGAIYRQFSLAMAVSILFSALLALTLTPALCATLLKPSTRGHHGRGGFFGAFNRGMARMTRGYQGRVVRILQRGGRSMAVFAALVVALGLGLHLLPGAFLPEEDQGYFMTSIQLPADATAERTLEVMQRYEAHIAARPGIASNQAIMGYSFAGSGPNAAMAYTMLHDWGARAGATVADEVERAQQAMAAAPEGRVIVVTPPAIDSLGTSSGFDLRLQARTGQSQAQLQAAQQQLLALAAASPLLRDVHAEGLPSGSTVRLEIDRHKAQAMGVGFSAISDTLSAAMGSQYVNDFPNAGRLQQVIVQADAPHRMQVDDVLKLHVRNAKGGMVALAELVTPVWSQTPLQLERYQGFPSLSLSGNAAAGASSGQAMAEMERLARQLPAGFALAWTGQSLQERASGAQAPWLMLLSMLVVFLVLAALYESWSIPAAVLLVVPLGLLGAVAAVLMRGLPNDVFFKVGMITVIGLSAKNAILIVEFARQLQLQGHGLVEAAIEAARLRLRPILMTSLAFALGVVPLMLATGASAETQHAIGTGVFGGMLTATVLAVFFVPLFYVLVQGARRWRWPWRRRREE
>NZ_CP047135.1|WP_159499326.1|1728224_1729397_+|efflux-RND-transporter-periplasmic-adaptor-subunit
MKTNRIQTAVWAVLAVMLAGCTKEEVASVAVPEVTVVSLSPATVQRDDELPGRVAAVRTAQIRAQVGGIVQRRLFAQGAEVEAGTPLFQIDPAAFQAEVDSARALLQRSEAAVVRTQVQSARLGSLAAAQAVSQQARDDAHAEHQQAVADVAQARATLARRQLDLRYATVASPIAGRIDEALVTEGALVTASDATPMAVVQQVDQVYVDVRQPASMLEGIQRAVVAGQLDAAKGLPVTLLGTGGTPYAEQGRMLFSGINVDAETGDIVLRIVVDNPARRLLPGMFVRARVPRGVQVGALLVPQQSVLRSTGGQSYAWVVGKEGKAVIRTIEVDGQVGRQYVVSHGLQAGERVVVEGQDRLQEGMAVTARPWQPAAVATTTATAAKAVGSR
>NZ_CP047135.1|WP_159499324.1|1727351_1728098_-|response-regulator
MHATDSPSAAAHWDRSLNALVLIVEDEPEIADIVAAYLHREGLRTVRAQDGIGALAMHRSARPDLILLDVQMPGMDGWTVLNTVRQRGDTPVIMLTALDQDLDKLTALRMGADDYVVKPFNPAEVAARVRAVLRRTLNARGQAKPGILRVGRLVIDPETHAVHVEGDGYSHELLLTLTEYKLLHCMALAPSRIFSRSELMHECLPESEALERTVDSHVSKLRRKLDDVGLGNVPASVRGVGYRLAADH
>NZ_CP047135.1|WP_159496640.1|1726287_1727352_-|HAMP-domain-containing-protein
MRRPGLSRHIVVSMSLMVLAVIVMVILSSYLLYAVLVNFYPYAEEPTGWAPTGPELVWVAAVTLLGLAVAVAASVRLSQRILTPLNSVVDSIGKLAGGDLGARAAASDRSLGEVALLVDDFNAMARRLQNMDADRVMWHAAIAHELRTPVTILRGRLQGLAEGVFQPDEAQFRSLLAQVEGLSRLIEDLRVLSLADSARLDVRRARSDVVHEVHSVMTLVDPGFRSGGFVLELETSREEHPAHCDPTRVRQALMALLENARRYATPGRVRIAVHDTATHVQVSIDDEGPGIDPALSAHIFDPFMRGDGSRSRQRGGSGLGLAVVKAIADAHGGRVSCTASALGGARFVIELPRQ
>NZ_CP047135.1|WP_159496639.1|1724492_1726310_+|DUF4105-domain-containing-protein
MQARRRARRWRWAALAALLASPFAQAELQFELQPDGLDGQQILAAERALQDVQHVVPAAWQARFDRPVRVRWSSTLPDHVHGRTRRGAITLRRDLLADVRAGEPLPRALQAALIHELAHVLDRGPGGGWSQTARWRDLSGWQQRPWRLGRTGNHFSTRSPDAYERTSPAEYLAVNAEHFVLDPAYACRRPALHAWFTAQIGASGHAADCDARLPLVQADDASGAASLLQVDPARVYAVDYLLAEGNDQLMSRWGHSMLRLVICAPGRAPGPACRMDLSYHRVLSFRAFVGDVQISSWRGLSGSYPSRLFVLPLNQVINEYTQLELRGLSSVPLRLQPGEIASLLERAAQVHWSYDGKYLFVSNNCAVETGKLLQEGVPAWATPGLNRITPRGLLTRLTREGRADPTVLQNRAEATRQGYYFASAKDHYQQLFEVARRELPLGTPEVTAWLLRPAAQRAPWLDQGGLRATAALLLLEQAARQREELRARDQLKRTLGNPAHGTDPARDTLMALLHDTGQLVSPAALLPAGGYGLPLGSERAAAAASTAAISARAVPAWQQLQQQLRARLPAAQQQELVTIEDNLDRLGARMRTLAREETATGAAVR
>NZ_CP047135.1|WP_128095854.1|1724193_1724493_+|DUF2388-domain-containing-protein
MTMRPILLLAVLALPLPALASSFAGSSAGSASGASSAGSSSSDDDKIVLDAREDAAAFVASDGAIRGARLEAALLHLREHDAAQRDASDLALARTLLAR
>NZ_CP047135.1|WP_159496638.1|1722745_1724134_+|FAD-binding-protein
MTDPRLSSLLQDCPGLRLTTEPADLEHYGRDWTRRWTPAPLAIALPGSVEEVQAILRWASTQQVAVVPSGGRTGLSGGAVAAHGELVLSLERMNKPLAFDAVDRTLTVQAGMALEAVHNAALEHGLIYPVDFAARGSCSIGGNIATNAGGIRVIRYGNTREWIAGLKVVTASGELLELNKGLIKNSSGYDFRQLLIASEGTLGVIVEATLRLTDPPPASNVMLLALPSFEVLMQVFAAFRERMQLQAFEFFTDRALEHVLAHGAQAPFEQVHPFYVVTEFAAGDEAQEAAAMAAFEACMEQGWVSDGVVSASDAQAAQLWRLREGITEAVARYKPYKNDVSVRISAMPAFMAETQALIGQAYPHFDVVWFGHIGDGNLHINVLKPDGTEDAEFLAQCEHVTTLLAQVLARFDGSISAEHGIGLVKKGYLDSTRSAPEIALMKAVKRAFDPEGLLNPGKLFDL
>NZ_CP047135.1|WP_128095852.1|1721317_1722559_-|phosphoglycerate-dehydrogenase
MSPKKTSFPKQDIRVLLLEGVSQTAIDVFTAAGYSQIELHSKALPEDELKARIAEAHIVGIRSRTQLSADVLANAKRLMAVGCFCIGTNQVDLDAAELAGIPVFNAPYSNTRSVAELVIAEAIMLTRGIPQKNAECHRGGWSKSAAGSHEVRGKTLGIIGYGHIGTQVGVMAEAMGMQVIFHDVETKLSLGNARAAISLDDLLSRADIVTVHVPETPATQWMIGAEQLARMRPGAHLINAARGTVVDIDALDAALHAGHIGGAALDVFPIEPKGNGDAFVSPLTAHDNVILTPHVGGSTLEAQDNIGVEVAAKLVRYSDNGSTLSAVNFPEVTLPEHEDSLRLLHIHQNVPGVLSKVNEIFSRHNVNIDGQFLRTDPKVGYVVIDITASEAQAGAVRDELAAIPGTLRTRVLY
>NZ_CP047135.1|WP_128098065.1|1734656_1735223_-|elongation-factor-P-like-protein-YeiP
MKANDIKKGNVVEYNNGVYQIRDIERSSPQGRGGNVRFRFIMYSVPGGNKLDASFDADDNLPEVELLRRQSTYSYKDGDAFVFLDDEDYTPYMVDAEVLGDDAGYITDGLTGIYVQVIDETPVGVQLPTSVVLEVVETPPEMKGGTATKRPKPAKLSTGIEIMVPEYIANGERVLVNTATGEFAGRAD
>NZ_CP047135.1|WP_159496644.1|1735289_1736060_-|SDR-family-NAD(P)-dependent-oxidoreductase
MQLSSVRAVITGGVSGLGLSVAQFLVAQGGKVALFDLNDDKGAAAVSALGADNARYFTTNVSDEAAVAAQIDAAHDFLGGLNVAISCAGILGAGRVLGKEAPMPLANFQTTVMVNLVGSFNVAKAAANRMQHNTPGDDGERGVIINTASVAAYEGQIGQAAYSASKGGVVSMTLPMARELSRFGIRVMTIAPGIFWTPMVDGMPPAVQESLAASIPFPPRLGKPDDFAGLVGHILGNTYLNGETIRLDGGVRLAPK
>NZ_CP047135.1|WP_159496645.1|1736138_1738706_-|EAL-domain-containing-protein
MSRRGPRRNVAVGDHLTAHVHALAAMDRALASPPAEADLHTLLREVQQALQEAMDDRQLALRRYAALFDAVPDPVSILSETGVVLDLNKAGVRAYGRPREDIVGKPIELLNPDLPNDHLDPVWEALHRGETYVIEVTNMRGDGSRFPVEVHSAGFEHQGEHCIVAVARDLSSRWQAESRYRLLMESIDKGVVLFDSHLRVVSANPAAHRILGTAGNGGSLQAMLAPDDWICVDEHGHPLTREQWPAAVSLRTGRIIRSTIVGLYHRPRGRMIWISTTNVPVFGTGRDCPDHVFGMFSDITELKRTNALFDRAQSLAHIGGWEWDRGLQRLYLTDEANRILGQELPLHDMAHLLECLRVDDRSQLQQALLDVIDKQAPFELELQGQRSDGHSFWVRMIGEAEAGDVDAARIAGTVQDITARKQAEETLRIQARTDPLTGIMNRDAVLNDLAARMANPTHCRVAVLYIDLDRFKTVNDLLGHNAGDELLIDATRRIATAIGTEGLLARFGGDEFLVVCDTRDQANQPERLAEAITRGFSTPFRFGSDEFAVTTSIGIARAPQDGLRPQQLIQNADIAMYDCKRRTRNGWQVFSPELAQRQHDRLQIESRLHRALDDDEFHLVYQPQVSLHDGRMVAAEALIRWRNSQLGELRPDIFIAHAESTGDIVRIGLWVLREACRQVRQWQDAGLGIVRVAVNVSYRQFVGEDLARHVRQVLDEFGLPGSALELEFTERVLIEDAPDTLQTFARLRDMGVQLTIDDFGEGYSALNYLRRLPIHGLKLSQLFVEGVPGNRSDEAVCEAVCGIARSLGLGLVAEGIESEPQRRFLQALGVTVGQGFLFAPGLAPDEFARRLTPRH
>NZ_CP047135.1|WP_159496646.1|1738702_1739596_-|hydroxymethylglutaryl-CoA-lyase
MDDVVRIVEVGPRDGLQNEAQPVATADKIELIRQLSLTGLRTIEATSFVSPRWVPQLADAAEVYAGIERRPGIAYPVLVPNEQGYDRARAVGVSEVAVFTAASETFNRTNTNAGIDESLARFAPILERAKADGVKVRGYVSTVLGCPYQGEVAVSEVVRVARALHEMGCYEISLGDTIGVGTPRKARAMLHAVATELPMSALAVHFHDTYGQALANIDACLEEGVRVVDSAVSGAGGCPYAKGASGNVASEDVVYLLHGIGMRTGIDLPALAATGRWLAARLGRETGSKAGKALAAT
>NZ_CP047135.1|WP_159496647.1|1739787_1740174_-|VOC-family-protein
MLDHIGIRCTDFTRSLSFFQQALAPLGITVVMQVSAEQTGDHDHAGFGRTGKPDFWIGNAPGAHGGVHVAFSADNREAVDAFHRAALAAGGQDNGAPGIREYYHPNYYGAFVLDPDGNNIEAVCHRPG
>NZ_CP047135.1|WP_159496648.1|1740184_1740973_-|enoyl-CoA-hydratase/isomerase-family-protein
MSDALRIERSASVLTLWLNRPTLHNAFDAALIAQLTAALEAAGRDEQVRAVVLAGQGASFSAGADMQWMRGMAAASEEDNREDSLALARLMRTLDELPKPTIARVQGAAFGGGVGLVACCDIAIASTAARFGLTESRLGLLPAVISPYVIDAIGPRQARRWFATGEHFDAETALRIGLVHQLIEPERIDEAVQRQLGLLDKAGPVASASAKELVRRVSVGRDRDALDRDNAALIARLRVSAEGQEGLGAFLDKRAPHWVTQD
>NZ_CP047135.1|WP_128098063.1|1741097_1741352_+|ferrous-iron-transport-protein-A
MTLSDLPLHSSALVESVQELHANDAIARRLKELGFVKGEDVRLVARGPVGGEPLLVQVGFTRFALRRSEARRVHVTALPVGVPA
>NZ_CP047135.1|WP_159496649.1|1741348_1743208_+|ferrous-iron-transport-protein-B
MNAATAPLRVALVGNPNSGKTALFNQLTGSRQKVANYTGVTVERKEGRLRAPSGREFAVLDLPGAYSLQPASLDEAITRDLCRGFYPGEAAPDVLLCVIDATNLRLHLRFALELRELGKPMIVALNMVDAAERRGIKIDVPALEQTLGVPVVETVAVRRNGAQALVARLDAMVPHLQAPVAVPDAAVDYHAQVRGILAASVSMPTRTAKIDDALDRWLLHPVFGLITLVVVMFLIFQAVFAWATPLMDGIEAGFGWLGENVAAVLPEGPLTSLITDGIIAGVGGVVVFLPQILILFAFILALEESGYLPRAAFLLDRMMAAAGLSGRSFIPLLSSFACAVPGIMATRSIQDPRDRLATILVAPLMTCSARLPVYALLIGAFIPAKTLWGFVSQQGLVLFGLYMAGILSALVMSWVMKKWRRDKSEHPLMLELPSYRIPHPRDLAVGLYERGMIFLKRVGGIILSLTILLWVLLKFPAAPANATMPAIDYSFAGQIGHAMTTIFAPLGFNWQICIALIPGMGAREVAVSSLATIYALSAADDDAAIQALTPVVAHGWSLATGLSLLVWFIYAPMCISTLATIKRETNSWKQVGFATVYLFAAAYVAALVTYQVTVALGGG
>NZ_CP047135.1|WP_159496650.1|1743207_1743462_+|hypothetical-protein
MSTGLLLQYIVVVLIVMVSAWVVLKKQFPGTVRKARGAIALGLVKPQRAAWLQALGRKIAPPASGGGGACGGCDSCGPSTPKQH
>NZ_CP047135.1|WP_159496651.1|1743805_1744387_-|flavodoxin-family-protein
MSRSIVILLGHPDRDSLCGALAERYQHAALAAGHPVQLFALGEIDFDPILRHGYRQIQPLEPGLEQINAAIAGCEHLVLVYPTWWGGMPALLRGFFDRAFLPGVAFRYRADSVWWDRLLAGRSARVITTLDTPPWYYRWVYRMPGHQQIRRTILEFCGIRPVKISGFGPVRSASAAQREAWLQQAEQLGRQAR

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Crispr_ID: NZ_CP047135_8

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP047135_8

2694015-2694094

Orphan

Consensus_repeat	Method
AGCCGACCAACGGTCGGCTCTACCCG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP047135_8

>merge|NZ_CP047135|8|2694015-2694094|CRISPRCasFinder
AGCCGACCAACGGTCGGCTCTACCCGGTTCATCCGGATGGTTACGTGTGGGGCCAGCCAACCAACGGTCGGCTCTACCCG

>NZ_CP047135|8|8|2694015-2694094|CRISPRCasFinder
AGCCGACCAACGGTCGGCTCTACCCG	GTTCATCCGGATGGTTACGTGTGGGGCC
AGCCAACCAACGGTCGGCTCTACCCG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP047135.1\|WP_159497302.1\|2695765_2696248_-\|tRNA-(adenosine(37)-N6)-threonylcarbamoyltransferase-complex-ATPase-subunit-type-1-TsaE	unknown	unknown	gnl\|CDD\|223873
NZ_CP047135.1\|WP_159497305.1\|2698889_2700227_+\|exodeoxyribonuclease-VII-large-subunit	unknown	unknown	gnl\|CDD\|234714
NZ_CP047135.1\|WP_159497304.1\|2697755_2698844_+\|tRNA-epoxyqueuosine(34)-reductase-QueG	unknown	unknown	gnl\|CDD\|272993
NZ_CP047135.1\|WP_159497309.1\|2705823_2706999_+\|serine-hydrolase	unknown	unknown	gnl\|CDD\|365903
NZ_CP047135.1\|WP_159497308.1\|2705100_2705673_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP047135.1\|WP_159497299.1\|2690472_2691411_-\|DUF1684-domain-containing-protein	unknown	unknown	gnl\|CDD\|225894
NZ_CP047135.1\|WP_159497295.1\|2686807_2687692_+\|tRNA-glutamyl-Q(34)-synthetase-GluQRS	unknown	unknown	gnl\|CDD\|235573
NZ_CP047135.1\|WP_159497292.1\|2682730_2683663_-\|PhnD/SsuA/transferrin-family-substrate-binding-protein	unknown	unknown	gnl\|CDD\|379006
NZ_CP047135.1\|WP_159497297.1\|2688928_2689447_+\|polyhydroxyalkanoate-synthesis-repressor-PhaR	unknown	unknown	gnl\|CDD\|130907
NZ_CP047135.1\|WP_159497307.1\|2703882_2704962_+\|ribonuclease-D	unknown	unknown	gnl\|CDD\|130455
NZ_CP047135.1\|WP_159497300.1\|2691422_2693288_-\|DNA-mismatch-repair-endonuclease-MutL	unknown	unknown	gnl\|CDD\|234630
NZ_CP047135.1\|WP_159497296.1\|2687765_2688506_+\|acetoacetyl-CoA-reductase	unknown	unknown	gnl\|CDD\|273823
NZ_CP047135.1\|WP_159497306.1\|2701846_2703718_-\|SUMF1/EgtB/PvdO-family-nonheme-iron-enzyme	unknown	unknown	gnl\|CDD\|335469
NZ_CP047135.1\|WP_159497294.1\|2685847_2686714_-\|protease-HtpX	unknown	unknown	gnl\|CDD\|235478
NZ_CP047135.1\|WP_159497301.1\|2694114_2695677_-\|AMIN-domain-containing-protein	unknown	unknown	gnl\|CDD\|223929
NZ_CP047135.1\|WP_159497298.1\|2689521_2690469_-\|TraB/GumN-family-protein	unknown	unknown	gnl\|CDD\|350614
NZ_CP047135.1\|WP_038687367.1\|2700840_2701743_-\|M48-family-metallopeptidase	unknown	unknown	gnl\|CDD\|320690
NZ_CP047135.1\|WP_038687391.1\|2684605_2685433_+\|inositol-monophosphatase	unknown	unknown	gnl\|CDD\|238817
NZ_CP047135.1\|WP_159497303.1\|2696244_2697732_-\|NAD(P)H-hydrate-dehydratase	unknown	unknown	gnl\|CDD\|182554
NZ_CP047135.1\|WP_159497293.1\|2683715_2684483_-\|TrmJ/YjtD-family-RNA-methyltransferase	unknown	unknown	gnl\|CDD\|223639

Protein	Function_ID	Function_description	E-value
NZ_CP047135.1\|WP_159497302.1\|2695765_2696248_-\|tRNA-(adenosine(37)-N6)-threonylcarbamoyltransferase-complex-ATPase-subunit-type-1-TsaE	gnl\|CDD\|223873	COG0802, COG0802, Predicted ATPase or kinase [General function prediction only].	3.9281e-48
NZ_CP047135.1\|WP_159497305.1\|2698889_2700227_+\|exodeoxyribonuclease-VII-large-subunit	gnl\|CDD\|234714	PRK00286, xseA, exodeoxyribonuclease VII large subunit; Reviewed.	0
NZ_CP047135.1\|WP_159497304.1\|2697755_2698844_+\|tRNA-epoxyqueuosine(34)-reductase-QueG	gnl\|CDD\|272993	TIGR00276, iron-sulfur_cluster-binding_protein, epoxyqueuosine reductase. This model was rebuilt to exclude archaeal homologs, now that there is new information that bacterial members are epoxyqueuosine reductase, QueG, involved in queuosine biosynthesis for tRNA maturation. [Protein synthesis, tRNA and rRNA base modification].	0
NZ_CP047135.1\|WP_159497309.1\|2705823_2706999_+\|serine-hydrolase	gnl\|CDD\|365903	pfam00144, Beta-lactamase, Beta-lactamase. This family appears to be distantly related to pfam00905 and PF00768 D-alanyl-D-alanine carboxypeptidase.	4.7462e-43
NZ_CP047135.1\|WP_159497299.1\|2690472_2691411_-\|DUF1684-domain-containing-protein	gnl\|CDD\|225894	COG3358, COG3358, Uncharacterized conserved protein [Function unknown].	5.42316e-75
NZ_CP047135.1\|WP_159497295.1\|2686807_2687692_+\|tRNA-glutamyl-Q(34)-synthetase-GluQRS	gnl\|CDD\|235573	PRK05710, PRK05710, tRNA glutamyl-Q(34) synthetase GluQRS.	3.20129e-133
NZ_CP047135.1\|WP_159497292.1\|2682730_2683663_-\|PhnD/SsuA/transferrin-family-substrate-binding-protein	gnl\|CDD\|379006	pfam12974, Phosphonate-bd, ABC transporter, phosphonate, periplasmic substrate-binding protein. This is a family of periplasmic proteins which are part of the transport system for alkylphosphonate uptake.	6.10413e-42
NZ_CP047135.1\|WP_159497297.1\|2688928_2689447_+\|polyhydroxyalkanoate-synthesis-repressor-PhaR	gnl\|CDD\|130907	TIGR01848, Uncharacterized_protein_Alvin_0064, polyhydroxyalkanoate synthesis repressor PhaR. Poly-B-hydroxyalkanoates are lipidlike carbon/energy storage polymers found in granular inclusions. PhaR is a regulatory protein found in general near other proteins associated with polyhydroxyalkanoate (PHA) granule biosynthesis and utilization. It is found to be a DNA-binding homotetramer that is also capable of binding short chain hydroxyalkanoic acids and PHA granules. PhaR may regulate the expression of itself, of the phasins that coat granules, and of enzymes that direct carbon flux into polymers stored in granules. The C-terminal region is poorly conserved in this family and is not part of this model.//GO terms added 12/6/04 [SS] [Fatty acid and phospholipid metabolism, Biosynthesis, Regulatory functions, DNA interactions].	8.3132e-62
NZ_CP047135.1\|WP_159497307.1\|2703882_2704962_+\|ribonuclease-D	gnl\|CDD\|130455	TIGR01388, Ribonuclease_D, ribonuclease D. This model describes ribonuclease D, a 3'-exonuclease shown to act on tRNA both in vitro and when overexpressed in vivo. Trusted members of this family are restricted to the Proteobacteria; Aquifex, Mycobacterial, and eukaryotic homologs are not full-length homologs. Ribonuclease D is not essential in E. coli and is deleterious when overexpressed. Its precise biological role is still unknown. [Transcription, RNA processing].	4.03083e-115
NZ_CP047135.1\|WP_159497300.1\|2691422_2693288_-\|DNA-mismatch-repair-endonuclease-MutL	gnl\|CDD\|234630	PRK00095, mutL, DNA mismatch repair endonuclease MutL.	0
NZ_CP047135.1\|WP_159497296.1\|2687765_2688506_+\|acetoacetyl-CoA-reductase	gnl\|CDD\|273823	TIGR01829, Acetoacetyl-CoA_reductase, acetoacetyl-CoA reductase. This model represent acetoacetyl-CoA reductase, a member of the family short-chain-alcohol dehydrogenases. Note that, despite the precision implied by the enzyme name, the reaction of EC 1.1.1.36 is defined more generally as (R)-3-hydroxyacyl-CoA + NADP+ = 3-oxoacyl-CoA + NADPH. Members of this family may act in the biosynthesis of poly-beta-hydroxybutyrate (e.g. Rhizobium meliloti) and related poly-beta-hydroxyalkanoates. Note that the member of this family from Azospirillum brasilense, designated NodG, appears to lack acetoacetyl-CoA reductase activity and to act instead in the production of nodulation factor. This family is downgraded to subfamily for this NodG. Other proteins designated NodG, as from Rhizobium, belong to related but distinct protein families.	1.16657e-139
NZ_CP047135.1\|WP_159497306.1\|2701846_2703718_-\|SUMF1/EgtB/PvdO-family-nonheme-iron-enzyme	gnl\|CDD\|335469	pfam03781, FGE-sulfatase, Sulfatase-modifying factor enzyme 1. This domain is found in eukaryotic proteins required for post-translational sulfatase modification (SUMF1). These proteins are associated with the rare disorder multiple sulfatase deficiency (MSD). The protein product of the SUMF1 gene is FGE, formylglycine (FGly),-generating enzyme, which is a sulfatase. Sulfatases are enzymes essential for degradation and remodelling of sulfate esters, and formylglycine (FGly), the key catalytic in the active site, is unique to sulfatases. FGE is localized to the endoplasmic reticulum (ER) and interacts with and modifies the unfolded form of newly synthesized sulfatases. FGE is a single-domain monomer with a surprising paucity of secondary structure that adopts a unique fold which is stabilized by two Ca2+ ions. The effect of all mutations found in MSD patients is explained by the FGE structure, providing a molecular basis for MSD. A redox-active disulfide bond is present in the active site of FGE. An oxidized cysteine residue, possibly cysteine sulfenic acid, has been detected that may allow formulation of a structure-based mechanism for FGly formation from cysteine residues in all sulfatases. In Mycobacteria and Treponema denticola this enzyme functions as an iron(II)-dependent oxidoreductase.	3.83802e-67
NZ_CP047135.1\|WP_159497294.1\|2685847_2686714_-\|protease-HtpX	gnl\|CDD\|235478	PRK05457, PRK05457, protease HtpX.	1.19694e-178
NZ_CP047135.1\|WP_159497301.1\|2694114_2695677_-\|AMIN-domain-containing-protein	gnl\|CDD\|223929	COG0860, AmiC, N-acetylmuramoyl-L-alanine amidase [Cell envelope biogenesis, outer membrane].	4.02428e-65
NZ_CP047135.1\|WP_159497298.1\|2689521_2690469_-\|TraB/GumN-family-protein	gnl\|CDD\|350614	cd14789, Tiki, Tiki homology domain antagonizes Wnt function via cleavage of amino-terminal residues. Tiki is a membrane-associated metalloprotease that inhibits Wnt via the cleavage of its amino terminus, diminishing Wnt's binding to receptors. Wnt is essential in animal development and homeostasis. In xenopus, tiki is critical in head development. In human cells, TIKI inhibits Wnt-signaling, which is important in embryogenesis, homeostasis, and regeneration. Deregulation of WNT contributes to birth defects, cancer and various diseases. TIKI homology domains are part of the TraB family and are related to the Erythromycin esterase, GumN plant pathogens, RtxA toxins, and Campylobacter Jejuni heme-binding, Chan-like proteins. TraB/PrgY are identified in gut bacterium Enterococcus faecalis, but its function has not been well characterized. Plasmid-borne, TraB has been implicated in the regulation of pheromone sensitivity and specificity. Based on homology to TIKI activity, it has been proposed that TraB acts as a metalloprotease in the inactivation of mating pheromone. The TIKI/TraB family has 2 conserved GxxH motifs and conserved glutamate and arginine residues that may be catalytic.	1.60682e-87
NZ_CP047135.1\|WP_038687367.1\|2700840_2701743_-\|M48-family-metallopeptidase	gnl\|CDD\|320690	cd07331, M48C_Oma1_like, Peptidase M48C, integral membrane endopeptidase. This subfamily contains peptidase M48C Oma1 (also called mitochondrial metalloendopeptidase OMA1) protease homologs that are mostly uncharacterized. Oma1 is part of the quality control system in the inner membrane of mitochondria, with its catalytic site facing the matrix space. It cleaves and thereby promotes the turnover of mistranslated or misfolded membrane proteins. Oma1 can cleave the misfolded multi-pass membrane protein Oxa1, thus exerting a function similar to the ATP-dependent m-AAA protease for quality control of inner membrane proteins; it cleaves a misfolded polytopic membrane protein at multiple sites. It has been proposed that in the absence of m-AAA protease, proteolysis of Oxa1 is mediated by Oma1 in an ATP-independent manner. Oma1 is part of highly conserved mitochondrial metallopeptidases, with homologs present in higher eukaryotes, eubacteria and archaebacteria, all containing the zinc binding motif (HEXXH). It forms a high molecular mass complex in the inner membrane, possibly a homo-hexamer.	1.1372e-84
NZ_CP047135.1\|WP_038687391.1\|2684605_2685433_+\|inositol-monophosphatase	gnl\|CDD\|238817	cd01639, IMPase, IMPase, inositol monophosphatase and related domains. A family of Mg++ dependent phosphatases, inhibited by lithium, many of which may act on inositol monophosphate substrate. They dephosphorylate inositol phosphate to generate inositol, which may be recycled into inositol lipids; in eukaryotes IMPase plays a vital role in intracellular signaling. IMPase is one of the proposed targets of Li+ therapy in manic-depressive illness. This family contains some bacterial members of the inositol monophosphatase family classified as SuhB-like. E. coli SuhB has been suggested to participate in posstranscriptional control of gene expression, and its inositol monophosphatase activity doesn't appear to be sufficient for its cellular function. It has been proposed, that SuhB plays a role in the biosynthesis of phosphatidylinositol in mycobacteria.	6.07864e-105
NZ_CP047135.1\|WP_159497303.1\|2696244_2697732_-\|NAD(P)H-hydrate-dehydratase	gnl\|CDD\|182554	PRK10565, PRK10565, putative carbohydrate kinase; Provisional.	1.64062e-140
NZ_CP047135.1\|WP_159497293.1\|2683715_2684483_-\|TrmJ/YjtD-family-RNA-methyltransferase	gnl\|CDD\|223639	COG0565, LasT, rRNA methylase [Translation, ribosomal structure and biogenesis].	2.08701e-95

>NZ_CP047135.1|WP_159497300.1|2691422_2693288_-|DNA-mismatch-repair-endonuclease-MutL
MSIRQLPEILINQIAAGEVVERPASVVKELVENALDAGATRVDIDLEEGGVRLIRIRDDGGGIAPEELPLAVSRHATSKIASLDDLEAVATLGFRGEALPSIASVSRFTLASRRPGDAHGSALQIEGGKLGEVTPRAHAPGTTVEVRELFYNVPARRKFLRAERTELGHIEEWLRSLALARPDVELRVSHNGKPSRRYKPGDLYSDTRLGETLGEDFAAQALRVDHSGAGLRLHGWIAQPHYSRASTDQQYLYVNGRSVRDRSVAHAVKMAYGDVLFHGRQPAYVLFLELDPTRVDVNVHPAKHEVRFRDSRLIHDFVYRTLKEALAETRAGMTATAGAADADALPGTAPGSAAGYGTPGGGYALGGGGGGSMAGQWRPQQSPLGLQVADAPSAYAALYATPAGGVSAALPPIPSYNGLPATAADSGVPPLGYAVAQLHGIYILAENAEGLIVVDMHAAHERIGYERLKTAHDGMGLHAQPLLVPITLAVGERDADTAEREADTLVALGFEITRSGPGSLHVRSIPALLANAEPEGLLRDVLTDLREHGQSRRIASARDELLSTMACHGAVRANRRLTVPEMNALLRDMEITERSGQCNHGRPTWARFSLAEIDRWFLRGR
>NZ_CP047135.1|WP_159497299.1|2690472_2691411_-|DUF1684-domain-containing-protein
MRRWGRALGAIMLAVGLAACGDKDAAPTVAAAEDPAFAAEQQQWRQKRYEELHAADGWTSLVGLHWLEYKAHYIGSGPGSGIRLAVGPAKLGMVARDGDTVWFTPERGAALRVGDTPLTGRIRFASDRDAAPTLISFDDGKGQLSLIHRGERYALRVKHADAASRANFTGLQYWPGGPSWRVNARFVPHAPGKTLPIVDITGLTTQMPNAGALEFERDGRTWRLEALGEPGRELFVIFADRTSGHGSYPAGRYLDVPAPDANGQVQVDFNHAYNPPCAFTPFATCPLAPQENRLDLRIDAGEQAYHAPEGEA
>NZ_CP047135.1|WP_159497298.1|2689521_2690469_-|TraB/GumN-family-protein
MSMLSRMLSPVLMISLLLGSGVVQARGDAPAAKATPPVPLLWKVTGPGDSRLYLLGSFHLLRAQDYPLAADVDQAFAASKRVVFELSPQDMQSPQLTQKMLQAAVRTDGTELKRDLDPATWSKLQAYATANNLPLAQLQGMKPWFVGLTITLGQFTKMGLDPNLGLDRHFMQRAATAGKPTSGLEDIDTQVGVLSGMSAAEQQQMVAEALDQADKADAEGRKLHDAWRRGDDKLLWTSMAAQMRGQYPQLYKRINTDRNDAWVPKLQQYLQAGQGGTLVVVGTLHLLGDDGVVDKLKAKGFTVERVCTGCAKPKR
>NZ_CP047135.1|WP_159497297.1|2688928_2689447_+|polyhydroxyalkanoate-synthesis-repressor-PhaR
MAANRIIKKYPNRRLYDTEISSYITIEDVRQLILDGEDFEVRDAKSGDDLTRSVLLQIIADQEQDGEPMLSTQLLSQLIRFYGDSLQGFMGNYLERSMQVFLDQQQQFRQQMGNLLGQTPWAMMNQLTERNLELWQDFQRNMGPGFGPRPGGTSTGTGKPDTPAPGAGKTRR
>NZ_CP047135.1|WP_159497296.1|2687765_2688506_+|acetoacetyl-CoA-reductase
MTSRVALVTGGTGGIGTAICQRLADQGHRVATNYRDHAKALAWREMMLARGCDVAIFPGDVADPDTAEAMVHAVEAALGPIEILVNNAGITRDTTFHRMRADQWHDVINTNLNSVFNVTRPVIEGMRRRGWGRVIQISSINGLKGQYGQANYAAAKAGMHGFTISLARENAGFGITVNTISPGYVATDMVMAVPDEVRAKIIADIPTGRLGKPEEIAYAVAFLVNEEASWITGSNLDINGGHHMGW
>NZ_CP047135.1|WP_159497295.1|2686807_2687692_+|tRNA-glutamyl-Q(34)-synthetase-GluQRS
MSMTPYRGRFAPSPTGPLHPGSLLAALGSWLLARHAGGQWWVRIEDVDPPRTVPGAIDQQLDCLAALGLASDGPIVRQSQRDALYQRALERLLDEGTAFACHCSRSELADQHGIHHHCVARGLRAQPAIRLRVPPGTRIAIHDGLRGPLEQDVHADVGDFVLRRADGYWAYQLAVVVDDGAQAISHIVRGADLLDSTPRQILLQRALGLPTPAYLHLPLLLDAHGRKLSKSDAARPLDPAHPLPALRQAWAALGQDPAVLRNAASVDALLADARAGFDPARLPAHDIPAPATPG
>NZ_CP047135.1|WP_159497294.1|2685847_2686714_-|protease-HtpX
MFSRIALFLLTNLAVLVLAGIVMSLLGVNPNQMSGLLVMAAIFGFGGSFISLLLSKWMAKRSTGAVVITEPRNPTERWLLATVERQAREAGIGMPEVAVYDGPEINAFATGANRNKALVAVSTGLLHNMSEDEAEAVLGHEIAHVANGDMITMALLQGVLNTFVIVLARIVGGFIDSALSGNREGGGRGFAYYIIVFVLEMVFGVFATMISMWFSRHREFRADAGGAHLAGRQKMIAALERLKLNHGQSTLPTQIAAFGIAGSTARKLFMSHPPLEERIAALKASAAA
>NZ_CP047135.1|WP_038687391.1|2684605_2685433_+|inositol-monophosphatase
MQKPAVTVMVKAARLAGNVLLRNINKLEALNVVQKGRMDYASEVDADAEKVIVKELKRAYPEYGIMGEEGGVQGVNRYMWVIDPLDGTSNYLRGFPHYCVSIALVENGEPIDAVIFDPLRNELFTASRGAGAVLNDRRIRVADRKDMGGAMIHTGFAPRERQRASSQLKAVDALLVHAEDVRRTGSAALDLAYVACGRADAYFEAGLKAWDIAAGVLLVREAGGRVCDYKGATPARMDSRGPETQQIVAGNVKNTDVLQKVLVNTGYAAEFDAKF
>NZ_CP047135.1|WP_159497293.1|2683715_2684483_-|TrmJ/YjtD-family-RNA-methyltransferase
MSVETAPTRIRFVLVGTQHPGNMGAAARAMKTMGLSRLVLVAPEKPLDDEAFRRSAGAEDVLGDAPVVATLAEAVADCTLVLGCTARARRVQLEELLPAVAAQRALAKAAEPAEVAFVFGRERTGLTNEELQLCHLAVHIPSNPDFSSLNLAAAVQVLAYETRMAVLGGVAGAAPADPEFREQPASHAQVEGMFAQLGQTLDDIDFHKGRAPESAMRKLRRLFLRTGLSEQEVRLLRGILSDAQRMARLATTKPE
>NZ_CP047135.1|WP_159497292.1|2682730_2683663_-|PhnD/SsuA/transferrin-family-substrate-binding-protein
MMGVPGLRWLLQGGLLCLAIVLMAGPASAASDNVLVLGRISDNPKSHYAQLQPLLDYVVPRMRDVGITEGRILMAPDAQQMASYLRRGRVDWVTETSGTAVALGLRSGAKPLLLTERSGVRDYHTVFFVRRDSTIATLADLKGHTLALQNVASTSAYLVPVMTLLQQGLTPEILLSARDAAAPDTVGYVFARTEGNIATLVHKGVVDAGAVSSVDWTDGHRIPATFRRDFRVIHRTEPYPRAVEMVRAGLDERVRDRLQAVLLEAASDPKAQDALQTFFGTSGFHRVDAQMQHRLDELKQGLARVRMEVE
>NZ_CP047135.1|WP_159497301.1|2694114_2695677_-|AMIN-domain-containing-protein
MGKPLTAICAAVGLCLASALAWAGEVRQVGLETGATGTRAEIALSGSGGYKTLTLAGPNRLVVDFPDSSAVRNLKLPVPKGVVTAVRTGQPVPGTFRVVFDLAESVAPFRPQMIKQGDESRLVIEWPGDAPSSVASTPAPAQAPAPAPAPAGTVAGATPPVQTAANAAQARSDAARATALLTASVRQQASATAATPVPTPAPPAAAAVNVAAAGNANAASNSATPAAILAGQATAAVVPAPTPVVVPAEPPRPVMPSEISRIKMRPGMRQLVVAIDPGHGGQDPGAVGPTGKREKDITLAVARELARQVNATPGLKAFLTRDTDVFIPLPMRAQKARSAKADIFISIHADAAENRAATGSSVYVLSTKGASSQRARWLADKENAADLVGGVRLQQTEGTLANVLLDLAQSGYMKASEDAAGHVLGGLKRIGKNHKPNIERANFAVLRTSDMPAMLVETAFISNPDEERRLIDPAYQRQIAGAVLDGVHTFFSRQPPPGTLYAARAEAEIQAASTVAGGSK
>NZ_CP047135.1|WP_159497302.1|2695765_2696248_-|tRNA-(adenosine(37)-N6)-threonylcarbamoyltransferase-complex-ATPase-subunit-type-1-TsaE
MITFFLAQTDDTDLLGQWLAATRPPQAVMQLQGDLGAGKSTLARALLRALGVQGAIRSPTYTLVERYPLADGHEAWHLDLYRIGQADELDFLGLDEGSASLWLIEWPERGAGALPPTDLIVALEIEGQGRRVRLNATSDAGREWLGRLPQGGDLQALSVG
>NZ_CP047135.1|WP_159497303.1|2696244_2697732_-|NAD(P)H-hydrate-dehydratase
MPKLAELFDIPAARQIDARASALLGDGGAALMDQAGQAAWQCLLEQWPQAQRLCVVVGPGNNGGDGYVLARLARQAGRAVHVLRLATDDAGTALARAAQQAWQDDGGQVAVFDGALPPADVVVDALYGLGLNRAPDGEAAALIEAINQAGVPVLALDVPSGVDANTGAVPGSAVRARVTLQFIVCHQGLYTGAALEHVGARRLAPLQLPDGADAQVTASAVPWQAPRLAGQLPARRANTHKGESGHVLCVGGNRGSGGAVMLAGEAALRAGAGLVSIATQALHVAPLLARLPEAMAHAVEDAQALQALLARAGVIAIGPGLGQDDWARELWRQVLGSGRPLVVDADALNLLAAAPQPLHDAILTPHPGEAARLLAVDTATIQADRFAAAQALSERFHAVVVLKGAGSIIAAPGQLPRVIAAGNPGMAVGGMGDLLTGIIAALRAQGLDAFDAAASGALLHGLAGDAAASEGQRGLLPTDLLVPLRRLVNPEPRPA
>NZ_CP047135.1|WP_159497304.1|2697755_2698844_+|tRNA-epoxyqueuosine(34)-reductase-QueG
MSAVPLPAPVNLARATERVREIARAHGFQRCGVSGIELGEDEAHLADWLGKGLYGTMDWMARHGTMRARPAELLPGTVRVISVGMDYGHKDDAQAWDTLHDGDRAYVARYALGRDYHKLMRNRLQKFADAIAAEIGAFGYRVFVDSAPVLERALARNAGLGWIGKHTCLIDKQGGSWFFLGEIYIDLPLPVDTPATAHCGTCTRCIDVCPTQAIIGPQRLDARRCISYLTIEHDGAIPEDMRPLMGNRIYGCDDCQLVCPWNKFARRTDEPDFRARNDLDTASLAQLFAWEEDEFLRRTEGSPIRRSGHERWLRNIAVALGNAPTSAQTLTALEARRAHASPIVREHVAWALQQHAARNPGA
>NZ_CP047135.1|WP_159497305.1|2698889_2700227_+|exodeoxyribonuclease-VII-large-subunit
MDRSAQILTPSQLNILARDLLEGAFPLIWVEAELGSVTRPASGHMYFTLKDARAQIRAALFKPKSQWLKFVPRDGMRVLARGRLTLYEARGEYQLVLDHMEEAGEGALRRAYEQLKARLEAEGLFAAERKRSMPAHVRRLAVITSPTGAAVRDVLSVLERRYPLLEVDLLPSLVQGDSAAAQITALLRAADASGRYDVILLTRGGGSLEDLWAFNDEHLARAIAASSTPVVSAVGHETDFSLADFAADLRAPTPSVAAELLVPDKRDLQVQVRRLAARMVQLQRHGLGQAMQRADRALLRLNAQGPQARLQLLQRRQQDLGRRLDAVWRQQQERRQAQLRHAAVVLRNGHPQRRLDALRERLQRLMPRADAAIGRQLQRNQLHLRGLARSMEAVSPLATVARGYSILTRDDDGSLVRSPLQVRPGDALTARVQDGAINVVVKQTP
>NZ_CP047135.1|WP_038687367.1|2700840_2701743_-|M48-family-metallopeptidase
MRNDPFGGQQQGRARRPGLFGNIRWWVLLAFAGYAAFYWFSNRAVDPYTGESVLIDSALDANQEKALGLQAYQEILAQERPVDPNAQVSRDVRAIAQRLIAKVDVVETALAEEHGLKPAHFSRDFEWEVNVIQSEQANAFCLPGGKMAVYTGLIPVARTVDAMAVVMGHEIAHALLRHGAQRMAQQKLTQIGQMAGAASGMDPQQQQMMMSAMGYGYLLPYARSHETQADEVGLMLAAAACFDPREAVPLWERMGQASGGQAPPEFSSTHPNPGTRIQNLQALMPKAMEYRQKFCESAGG
>NZ_CP047135.1|WP_159497306.1|2701846_2703718_-|SUMF1/EgtB/PvdO-family-nonheme-iron-enzyme
MRNFVLTASLLAGVLVALAACSADAPPPPAAAAKPQARAQPAATAPAARVTIGGQDAAETVQRWQPPAVEIADDGVAAARRQAAQAFEQGRLYEDAQAAVPLWLALLQRDAKDRQAVAGLKRARQQLLEDANALLVRPLKQREAVAQASDMALVLLTIAPDDPRVRQLQSRVEMAQRVIAYNRAGEEDLRAGRIGEDGDGAIPNFREALALNPDDARARQGLAAAESGLIGRAETAARASDFATAGTWLAEAAKVRDSSITIADAFERIERIRADTLTRLRDEGLRDLATPQGLKAAREKLEDALRMALPGDPVVGQLRERIELVTHYGSFRPRQVFSDALRDGGRGPQMIVVPHGGFQMGAGDAELGASDAEKPSHYVRFERGFALSITEVTVADFRRYVQASNARPRATRRGHSIVYDERSGNFVRHSGVDWQSDYNGAPALANSPVMHVSVRDAEHYAIWLSEQTGRSYRLPSEAEFEYVLRAGSSGRYPWGDAGTPPPRSGNFTGAEDVSPSGRRWYNAFVGYGDGWWGPAPVASFEPNAWGVHDVAGNLSEWVADCWHASYRRAPADGAAWFNPGCRQRVIRGGNWANAPEQTRAAWRQSQDSDTTSARIGFRLVRGI
>NZ_CP047135.1|WP_159497307.1|2703882_2704962_+|ribonuclease-D
MAYWIKTPAELDERYRQRPTRIGLDTEFIRERTYWPQLALVQMAVGEEILLIDPLIPGMNEALATWLADTSILKIMHSASEDLVTFKVACGVLPRPLFDTQIGAALAGIGGGMGYQKLVNAITGVTLAKGETRSDWMRRPLSEAQLDYAADDVEYLFAIHEAIDARLDELDRRQWLQDDAERLLASVENDEDRWPHVAMRSAQFMDAAAQMRLLRLLRWRDVQARSSDKPRSWILDNELAALLARTPPADMAALDKLMEGFPKAPRKLLSPVWEALTTPLDDEADAPLALPGTDSNKQALKRLQDAVSARTAELGLPDGVLASRKHLESYLESRQWPNALAGWRRQQLEPVLAPLLPAA
>NZ_CP047135.1|WP_159497308.1|2705100_2705673_+|hypothetical-protein
MIQILSRWLLLVPLATALLPALADASALREDDAPAGSCQPDPDSCPPWMPSQADIREVMSDYFCELIDSGALASPSAGRVVVEPSRMACAALHPEVGANFVCGGEVRVVHPDGTQRYHGVSPTLHHDADNRIAIYLGDDDAGNERWHVPVSHSRSRYCAAPAAPLPQRCAAATPRFCTAGNSARTARSRA
>NZ_CP047135.1|WP_159497309.1|2705823_2706999_+|serine-hydrolase
MHTITARRTAASSHSTVRGLRRWLGLLLLCVAASASAADDLQTRIAQAMQGTATPAMGVLVIREGKVAEQAVSGVRRNDARTAATHSDAWMIGSTGKPITVAMIARLVEQGVLTWDAPLSAMLPDLAAQMQPAYRGVTLVQLLSHRAGLPENLSDGAALDAFFTDIRALPVQREAYIRAALSEAPVHPPGTEFAYSNSGFLVAAVIAERATGTDVETLIQREVFQPLGMTGAGFGAPPAGQLLGHRAGKPVTAAAQKADDGVPPLYTAAGNLHMRLQDLALFAMDQLAGSRGQGKLLTPASYALMQTAQPGSPSGLDWGVQPSIAGRQGPVLVHGGSDGNWLAWVVLFPAQNSGVIAIANAAEDMGADKASMGLLGGLFAELAPAATPAAK

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Crispr_ID: NZ_CP047135_9

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP047135_9

3258420-3258525

Orphan

Consensus_repeat	Method
GACGCACCGCGCCTTGCGCGGCGCAGCCGACC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP047135_9

>merge|NZ_CP047135|9|3258420-3258525|CRISPRCasFinder
GACGCACCGCGCCTTGCGCGGCGCAGCCGACCGTTGGTCGGCTGCACTTCCTCCCGACACCGCAATACCTGATAGACGCACCGCGCCTTGCGCGGCGCAGCCGACC

>NZ_CP047135|9|9|3258420-3258525|CRISPRCasFinder
GACGCACCGCGCCTTGCGCGGCGCAGCCGACC	GTTGGTCGGCTGCACTTCCTCCCGACACCGCAATACCTGATA
GACGCACCGCGCCTTGCGCGGCGCAGCCGACC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP047135.1\|WP_159497669.1\|3251033_3253484_+\|TonB-dependent-receptor	unknown	unknown	gnl\|CDD\|238657
NZ_CP047135.1\|WP_159497664.1\|3244963_3246574_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|225161
NZ_CP047135.1\|WP_159497670.1\|3253685_3254444_+\|trehalose-phosphatase	unknown	unknown	gnl\|CDD\|319767
NZ_CP047135.1\|WP_159497665.1\|3246939_3248661_-\|ubiquinone-dependent-pyruvate-dehydrogenase	unknown	unknown	gnl\|CDD\|181661
NZ_CP047135.1\|WP_159497678.1\|3269210_3270824_+\|PAS-domain-containing-sensor-histidine-kinase	unknown	unknown	gnl\|CDD\|236901
NZ_CP047135.1\|WP_159497666.1\|3248778_3249069_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP047135.1\|WP_159497677.1\|3267689_3268859_-\|ADP-forming-succinate--CoA-ligase-subunit-beta	unknown	unknown	gnl\|CDD\|234813
NZ_CP047135.1\|WP_128097083.1\|3261470_3262466_-\|23S-rRNA-pseudouridine(1911/1915/1917)-synthase-RluD	unknown	unknown	gnl\|CDD\|183020
NZ_CP047135.1\|WP_159497679.1\|3270912_3272298_+\|response-regulator	unknown	unknown	gnl\|CDD\|225114
NZ_CP047135.1\|WP_159499474.1\|3249403_3250216_-\|SH3-domain-containing-protein	unknown	unknown	unknown
NZ_CP047135.1\|WP_159497673.1\|3258910_3260248_+\|OmpA-family-protein	unknown	unknown	gnl\|CDD\|143586
NZ_CP047135.1\|WP_159497675.1\|3260691_3261471_-\|peptidoglycan-editing-factor-PgeF	unknown	unknown	gnl\|CDD\|224413
NZ_CP047135.1\|WP_128097082.1\|3262582_3263467_+\|outer-membrane-protein-assembly-factor-BamD	unknown	unknown	gnl\|CDD\|274513
NZ_CP047135.1\|WP_159497674.1\|3260255_3260687_-\|DUF393-domain-containing-protein	unknown	unknown	gnl\|CDD\|225556
NZ_CP047135.1\|WP_159497668.1\|3250305_3250794_-\|DUF3574-domain-containing-protein	unknown	unknown	gnl\|CDD\|371896
NZ_CP047135.1\|WP_159497671.1\|3254541_3256323_+\|glycoside-hydrolase-family-15-protein	unknown	unknown	gnl\|CDD\|225922
NZ_CP047135.1\|WP_128097080.1\|3266792_3267668_-\|succinate--CoA-ligase-subunit-alpha	unknown	unknown	gnl\|CDD\|180194
NZ_CP047135.1\|WP_159497676.1\|3264932_3266567_-\|NAD+-synthase	unknown	unknown	gnl\|CDD\|237577
NZ_CP047135.1\|WP_159497667.1\|3249084_3249396_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP047135.1\|WP_159497672.1\|3256319_3257684_+\|alpha,alpha-trehalose-phosphate-synthase-(UDP-forming)	unknown	unknown	gnl\|CDD\|274112

Protein	Function_ID	Function_description	E-value
NZ_CP047135.1\|WP_159497669.1\|3251033_3253484_+\|TonB-dependent-receptor	gnl\|CDD\|238657	cd01347, ligand_gated_channel, TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) anti-parallel beta-barrel. Ligands apparently bind to the large extracellular loops. The N-terminal 150-200 residues form a plug from the periplasmic end of barrel. Energy (proton-motive force) and TonB-dependent conformational alteration of channel (parts of plug, and loops 7 and 8) allow passage of ligand. FepA residues 12-18 form the TonB box, which mediates the interaction with the TonB-containing inner membrane complex. TonB preferentially interacts with ligand-bound receptors. Transport thru the channel may resemble passage thru an air lock. In this model, ligand binding leads to closure of the extracellular end of pore, then a TonB-mediated signal facillitates opening of the interior side of pore, deforming the N-terminal plug and allowing passage of the ligand to the periplasm. Such a mechanism would prevent the free diffusion of small molecules thru the pore.	3.23174e-61
NZ_CP047135.1\|WP_159497664.1\|3244963_3246574_-\|hypothetical-protein	gnl\|CDD\|225161	COG2252, COG2252, Xanthine/uracil/vitamin C permease [Nucleotide transport and metabolism].	2.40704e-08
NZ_CP047135.1\|WP_159497670.1\|3253685_3254444_+\|trehalose-phosphatase	gnl\|CDD\|319767	cd01627, HAD_TPP, trehalose-phosphate phosphatase similar to Escherichia coli trehalose-6-phosphate phosphatase OtsB and Saccharomyces cerevisiae trehalose-phosphatase TPS2. Trehalose biosynthesis in bacteria is known through three pathways - OtsAB, TreYZ and TreS. The OtsAB pathway, also known as the trehalose 6-phosphate synthase (TSP)/ Trehalose-6-phosphate phosphatase (TPP) pathway, is the most common route known to be involved in the stress response of Escherichia coli. It involves converting glucose-6-phosphate and UDP-glucose to form trehalose-6-phosphate (T6P), catalyzed by TPS, the product of the otsA gene, this step is followed by the dephosphorylation of T6P to yield trehalose and inorganic phosphate, catalyzed by a specific TPP, the product of otsB gene. This OtsAB (or TSP/TPP) pathway, is also the most common route known to be involved in the stress response of yeast In Saccharomyces cerevisiae, the corresponding enzymes, TPS1p and TPS2p, form a multimeric synthase complex together with additional regulatory subunits encoded by Tsl1 and Tps3. Trehalose is a common disaccharide accumulated by organisms as a reservation of carbohydrate and in response to unfavorable growth conditions. This family belongs to the haloacid dehalogenase-like (HAD) hydrolases, a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members of this superfamily include 2-L-haloalkanoic acid dehalogenase, azetidine hydrolase, phosphonoacetaldehyde hydrolase, phosphoserine phosphatase, phosphomannomutase, P-type ATPases and many others. HAD hydrolases are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.	1.08182e-62
NZ_CP047135.1\|WP_159497665.1\|3246939_3248661_-\|ubiquinone-dependent-pyruvate-dehydrogenase	gnl\|CDD\|181661	PRK09124, PRK09124, ubiquinone-dependent pyruvate dehydrogenase.	0
NZ_CP047135.1\|WP_159497678.1\|3269210_3270824_+\|PAS-domain-containing-sensor-histidine-kinase	gnl\|CDD\|236901	PRK11360, PRK11360, two-component system sensor histidine kinase AtoS.	2.39047e-37
NZ_CP047135.1\|WP_159497677.1\|3267689_3268859_-\|ADP-forming-succinate--CoA-ligase-subunit-beta	gnl\|CDD\|234813	PRK00696, sucC, ADP-forming succinate--CoA ligase subunit beta.	0
NZ_CP047135.1\|WP_128097083.1\|3261470_3262466_-\|23S-rRNA-pseudouridine(1911/1915/1917)-synthase-RluD	gnl\|CDD\|183020	PRK11180, rluD, 23S rRNA pseudouridine(1911/1915/1917) synthase RluD.	1.41955e-145
NZ_CP047135.1\|WP_159497673.1\|3258910_3260248_+\|OmpA-family-protein	gnl\|CDD\|143586	cd07185, OmpA_C-like, Peptidoglycan binding domains similar to the C-terminal domain of outer-membrane protein OmpA. OmpA-like domains (named after the C-terminal domain of Escherichia coli OmpA protein) have been shown to non-covalently associate with peptidoglycan, a network of glycan chains composed of disaccharides, which are crosslinked via short peptide bridges. Well-studied members of this family include the Escherichia coli outer membrane protein OmpA, the Escherichia coli lipoprotein PAL, Neisseria meningitdis RmpM, which interact with the outer membrane, as well as the Escherichia coli motor protein MotB, and the Vibrio flagellar motor proteins PomB and MotY, which interact with the inner membrane.	7.68486e-30
NZ_CP047135.1\|WP_159497675.1\|3260691_3261471_-\|peptidoglycan-editing-factor-PgeF	gnl\|CDD\|224413	COG1496, yfiH, Multicopper polyphenol oxidase (laccase) [Secondary metabolites biosynthesis, transport and catabolism].	2.33788e-89
NZ_CP047135.1\|WP_128097082.1\|3262582_3263467_+\|outer-membrane-protein-assembly-factor-BamD	gnl\|CDD\|274513	TIGR03302, OM_YfiO, outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). [Protein fate, Protein and peptide secretion and trafficking].	2.60691e-88
NZ_CP047135.1\|WP_159497674.1\|3260255_3260687_-\|DUF393-domain-containing-protein	gnl\|CDD\|225556	COG3011, COG3011, Predicted thiol-disulfide oxidoreductase [General function prediction only].	6.56684e-50
NZ_CP047135.1\|WP_159497668.1\|3250305_3250794_-\|DUF3574-domain-containing-protein	gnl\|CDD\|371896	pfam12098, DUF3574, Protein of unknown function (DUF3574). This family of proteins is functionally uncharacterized. This protein is found in bacteria and viruses. Proteins in this family are typically between 144 to 163 amino acids in length. This protein has a conserved TPRF sequence motif.	1.16227e-41
NZ_CP047135.1\|WP_159497671.1\|3254541_3256323_+\|glycoside-hydrolase-family-15-protein	gnl\|CDD\|225922	COG3387, SGA1, Glucoamylase and related glycosyl hydrolases [Carbohydrate transport and metabolism].	1.32529e-80
NZ_CP047135.1\|WP_128097080.1\|3266792_3267668_-\|succinate--CoA-ligase-subunit-alpha	gnl\|CDD\|180194	PRK05678, PRK05678, succinyl-CoA synthetase subunit alpha; Validated.	0
NZ_CP047135.1\|WP_159497676.1\|3264932_3266567_-\|NAD+-synthase	gnl\|CDD\|237577	PRK13981, PRK13981, NAD synthetase; Provisional.	0
NZ_CP047135.1\|WP_159497679.1\|3270912_3272298_+\|response-regulator	gnl\|CDD\|225114	COG2204, AtoC, Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms].	0
NZ_CP047135.1\|WP_159497672.1\|3256319_3257684_+\|alpha,alpha-trehalose-phosphate-synthase-(UDP-forming)	gnl\|CDD\|274112	TIGR02400, Alphaalpha-trehalose-phosphate_synthase, alpha,alpha-trehalose-phosphate synthase [UDP-forming]. This enzyme catalyzes the key, penultimate step in biosynthesis of trehalose, a compatible solute made as an osmoprotectant in some species in all three domains of life. The gene symbol OtsA stands for osmotically regulated trehalose synthesis A. Trehalose helps protect against both osmotic and thermal stresses, and is made from two glucose subunits. This model excludes glucosylglycerol-phosphate synthase, an enzyme of an analogous osmoprotectant system in many cyanobacterial strains. This model does not identify archaeal examples, as they are more divergent than glucosylglycerol-phosphate synthase. Sequences that score in the gray zone between the trusted and noise cutoffs include a number of yeast multidomain proteins in which the N-terminal domain may be functionally equivalent to this family. The gray zone also includes the OtsA of Cornyebacterium glutamicum (and related species), shown to be responsible for synthesis of only trace amounts of trehalose while the majority is synthesized by the TreYZ pathway; the significance of OtsA in this species is unclear (see Wolf, et al., ). [Cellular processes, Adaptations to atypical conditions].	0

>NZ_CP047135.1|WP_159497672.1|3256319_3257684_+|alpha,alpha-trehalose-phosphate-synthase-(UDP-forming)
MSRLVVVSNRVAAPGVAAPGGLAVGLLAALKERGGMWFGWSGKSVRDPSGALHEQTEGDIRYVTMDLNKPDVDGYYNGFANRTLWPLLHFRLDLVDYDRATRETYRRVNALFAEKLAPLLREDDIVWIHDYHLIPLASLLRERGIGCRIGFFLHVPMPSADLLQAMPDHLRLFSSLYAYDLVGFQTQRDTDRFQSYVRLFGGGRVVADGELEAPGGRRFRAAAFPIGIDTAHIERQAKAGANKPAVRDLRNSLRDRQLAIGVDRLDYSKGLPERFQGFERYLERHPDQRGSLTYLQIAPVSRGDVTEYRQLRGQLEQIAGHINGGHAAPDWTPLRYVNQNFTHATLTGFYRAASVGLVTPLRDGMNLVAKEYVASQDPENPGVLVLSLLAGAADELKQALLVNPHDLDGVADAIATAATMPLRKRTERWQAMMEHLRTYDINHWRQTYLQALEG
>NZ_CP047135.1|WP_159497671.1|3254541_3256323_+|glycoside-hydrolase-family-15-protein
MKQPDLNLGVVGNGSFGALIDQQARVVWSCLPTFDGDPTFCALLSPNQNEGGDFAIELEDLVSTEQSYLTNTAILRTVLHDKHGGALEIIDFAPRWRQNDRFYRPVSLIRQVRPLAGNPRIIVRARPLADWGARVPASTWGSNHIRWELPDHVLRLTTDVPLRLVRDGLPFVLSHPVNLVLGVDESLNRSLSGYVQESFQRTRDYWREWVRYLSIPLEWQDAVIRSAITLKLCQYEDSGAIIAAMTTSIPEAPGSIRNWDYRYCWLRDAAFVVRTLNRLGATRTMEQFLGYIFNLATTDGSLQPLYGIGFEAKLEETEVASLDGYRGMGPVRRGNLAWVQRQHDVYGSVVLASTQLFFDQRLQDPGDAHTFARLEPLGEQAFALHDVPDAGLWEFRGRTEVHTYTSAMCWAACDRLCKIAIRLKLDDRADYWRDRANTIHARILREAWSEDLGHFTDTFGGHRLDASLLLLADIGFIEAHDARFIATVEAIGRDLKHGNALYRYVAPDDFGEPETSFTICTFWYIDALAAIGRMDEARDMFETLLERRNHLGLLSEDLAFDNGEAWGNFPQTYSHVGLITAAMRLSRSWQEAS
>NZ_CP047135.1|WP_159497670.1|3253685_3254444_+|trehalose-phosphatase
MANDLPPRPPPPLLDDACALFLDVDGTLIEFERDPEAVTLLPEVRNAIGRISDRLEGAVALISGRPLNQLDELFAPLHLPAAGLHGHELRIADGRLDSPAGTTDTSEWLHAVHQQAMRFAHGHPGVLVEDKGRSLALHWRGAPHAASDVRAFAERHIRGNAAYRLQPGDHVVEFVPEGSDKGRALQQLMQHPPFRGRLPVFLGDDLTDEFGFDAANAQHGWSVLVGARSPSAAVFALPHIRSVHAWLQENAY
>NZ_CP047135.1|WP_159497669.1|3251033_3253484_+|TonB-dependent-receptor
MSRPSASRLGLAIALVLSSPLLAQDATAQDAPGSATTLDTVIVTGTRAVDRTVLESTSPVDVLTAEDIRKAGVVNGELGSALQALLPSFNFPRQSNSGGADHIRAAQLRGLSPDQVLVLVNGKRRHSSALVNTDSKIGKGTTPVDFNAIPISAIKRIEVLRDGAGALYGSDAVAGVINVILDDAPEGGAFEASFGANHTDLKPIDRTITDGQTSYASAKVGIRLGDEGGFLRVGLELKNHEGTNRAGFDQIPPWDQSDTNLALQGKRNYVLGDGKTKDLNAWINSELPFGETSKFYFFSTFNQRDSEGANYFRYPDSDANWAQVYPNGYRPISEGENRDVQAVAGAKGQWGEWNYDASLDYGTNSFTYRLRNSLNASLGPTSPTRFKTGDYRNELTVANLDLGRVFSQGENITHSLGLGVEARRDHYQTRPGDPSSYAAGPFTDRPTGSQAGGGLTPQDATTLSRDVASAYVSLSSQFGEHFSSDLAARYEHSDDFGGELTGKLGLRYEFAPAFALRGAISNNFRAPSLAQIGYESTSTGYNAAGQLVQGRVLSVNNPIARGLGATDLKPEKSVNTSLGFTSRIGDHFDVSLDFFQIDIDDRIALSESITGDALTDYVQQQFGVAGLQSASFFVNAADTRTRGAELVSNWRQSLGSGELVLTGTYAYTKTTLKNVLATPASLLALDPDYVLFGVEETNTLTDATPRTRGSVAASWSNDRWSLSSRVNRYGSVTRVFNFGDGFVPRQTYGAEWQLDAEVEFKITPQWSVAVGGQNLTDNYSDLSNDDIYYYGNLPYDVLSPVGSNGAYYYGRVRYTF
>NZ_CP047135.1|WP_159497668.1|3250305_3250794_-|DUF3574-domain-containing-protein
MKSHALLFALVLAASGCATAAPAAKPVPPAPATATATLQGDAARPDAAAGWVRSELYFGVGEESGASERKQTDAITEAQWRAFLDKQVTPRFPDGLTVFDAYGQWLFRGAAEPNRLRTKVLVVLHENTPQRRADIEAIRLAWKQATGHQSVLWAQQAVEVSF
>NZ_CP047135.1|WP_159499474.1|3249403_3250216_-|SH3-domain-containing-protein
MGVNAAAAAADGPALRMEVGPGQVATARVEAQGTLALLLPSGRQQRLDGVADADGGARLSQLDVDFDGRPELVARASVGQVNEAVAVYRFDTRQARFVPLELPASSHEQCGGLMGLDVDAANRTLSSSCRSGPMWYVDLYRYHDGRLYLYRAERTLMLGDALEATIFVKQTAESGPMAVWSTFDPAGNVLETAISDGLVAPRSDRRLLAFSGQVVPARLPLYARPGDTATRRYLVRDDRVELLDEKDGWVKVRYANPTRGDILGWVNANP
>NZ_CP047135.1|WP_159497667.1|3249084_3249396_+|hypothetical-protein
MAFDLYLDDAGPRMRHAWIDAHEEAILSPDGSRYPQLSRLRQEFYGAPRVSPGQAAALVQEVIGRLLEEPIGAEGPLAEVGLRLILLFDQAQRHGLHIQCEGD
>NZ_CP047135.1|WP_159497666.1|3248778_3249069_+|hypothetical-protein
MQIVLRCATTQQFLSFHEQQWLHGIDPVAHPWLAQMLRAPRGGVAPDDLPAAMDALLACLADQDPADTVVRRSGLRLLLWLATGQRQGQPVSWQHR
>NZ_CP047135.1|WP_159497665.1|3246939_3248661_-|ubiquinone-dependent-pyruvate-dehydrogenase
MSKRVAEIVVETLQAAGVRHCYGIVGDTLNYVTDAIHHSDIEWVHMRHEEVAAFAAGAESLISGQLTACAGSCGPGGLHFINGVFETNRNRAPMVLIASQVVTAELGMEFPQEVDFKAVYASCSVFCEQVHSPEQARRVVALACQAAISRRGVAVVILPADISEAVVKHDVPFSVHYTQPVLRPSDEELQRIAALIGDGKRVGIYAGAGCEHAHDALVALGERLQAPIAHTSRAKDFVEHDNPYNMGMTGIFGIESGYHTLMACDTLLLLGADFAWGQYYPDKATLIQVDRDGSHLGRRHPVTLGVVGDIGPTLEALLPMLPPRQDRSFLDECIEHRDKALATREKEEQPGEGELIHPQHLTALINRYATDDALFTADGGSPMVWILRHIRTNGRRRTLTSLLHGTMANAMPQALGLQKAYPGRQVISLSGDGGIAMLLGDLLTAVQENLPIKVVVYNNSSLNFVELEQKVEGLLDNYTDLKNPDFGRLAEVIGFYGRTVTRSEDLEQAVQDFLAHPGPALLDVHTSPTELVMPPQVEAKQVAGTALYAAKALLSGRVGDVRDLLANNFLNKP
>NZ_CP047135.1|WP_159497664.1|3244963_3246574_-|hypothetical-protein
MSAPAPVRSGPPRWFVAGDFNGFFGLVVDNLSILGFIAMALVGIFQFPADVVFGRMFPGTAFGVLVGNVLYTWMARRLATRTGRDDVTAMPLGLDAPTSIGMALLVLGPAFIAFKVQGLAPHDAAVATWQLGMASLVIMGVLKVILSFFGEAVTRALPRASLLGSIAGIAIALMGFLPLLETLRSPVVGFVTLGLLLYVLIAKRKLPIRAPGVLVAFVFGTALYYGLGLAGLGAPGFHVPDWTPPQVVLPWPTLGFIDGLPTAMTYLPLLLPFGLLMVVGGINVSESARAAGDDYRTRDILLVEAVATLVAGLCGGVAQTTPYIGQPAYKHMGARSGYTLLTGLFVGIGGMLGVISGLVQWLPLAVLAPIIVYVAIDITTQAFQAAPREHAGAMVLGFLPSVAYLLAIKAPGWIAPEQLAAMTATLDGHGLPELAVIFTLGNGFIITSMLWIAAVVAMIDGRLLRSSGFLLVAAVLTLFGLIHSVDPRGGIYLPWQLVGLPKLIMWQFAGAYVALAGLLALLSLQKQPRVDHDSRS
>NZ_CP047135.1|WP_159497673.1|3258910_3260248_+|OmpA-family-protein
MSAFERFIDDAAVRLELGYRARSVVNVLSRWIASHPLGLDGLAQQFEQAGLGAQFRSWQRPGEPSRPLLASELEHAIGTHALVTMARRAGFPPGTFRVIACELLPGLVTLASAARPVRAAAFRPARLPRLRGSTPAPARTVQGLALRGMLWPLAGVALIAFSTWLLLKIRAPHWAPPVITEQRDARLSLHQYGNRVLVQGRLPSEAARRQAWNALTALHGRDAVRGGIALDPATRHPRWLDRLTARIQQLEGDGLLLDFNGDTLRVDTSAMVAARRLEVSRLLRRHFADLQTTGLWGPGLAALAALPAQADATTVVDALNQTTLKFRAGSAVLTGDSTDTVDAVAAALTLLPAGTRIDVAAHTDSNGRADANLLLSQQRAATVAQALQERGVPAAMLVATGHGHQHPIADNRDDAGRARNRRITYAVVAPDSDTTAADSLAWLER
>NZ_CP047135.1|WP_159497674.1|3260255_3260687_-|DUF393-domain-containing-protein
MDRTPADVDRSAGHAVIVFDGICALCSRWVRFLLRFDRQGRYRFAAMQGSHGRSLLQQHGLDPDDPLSFLLLENGQAWTDTDAILRVLAGLGGAWRLTAVLRLLPSAWRDRAYRALARNRYRWFGRHDSCYLPAPGQAGRFLD
>NZ_CP047135.1|WP_159497675.1|3260691_3261471_-|peptidoglycan-editing-factor-PgeF
MPAPVPLLAADWPAPPGVQAGTTLRYGAGGSVPPFDQFNMGNRYAADGDDPAQVQRNRDLLQAGLALPSAPHWLRQVHGTTVLRFDAAPTAQGVETEPTADAAVTSVPGVVLAILTADCLPVVLAARDGSEIGAAHAGWRGLADGMLEATVAAMRTPAAQLQAWLGPAAGPTHYEVGEDVFAAFVERDAGAEAAFAATRPGHWKVDLYALARRRLHSVGVDPAQISGGQLCSIDDPQRFYSHRRDRRTGRMATLAWMAR
>NZ_CP047135.1|WP_128097083.1|3261470_3262466_-|23S-rRNA-pseudouridine(1911/1915/1917)-synthase-RluD
MSDNASESESPRQAVVPDTAAGRRFDAVLAELFPEFSRSKLTEWIKSGDVLLDGQAVRGRDPVRGGEVASLHVVLDTQTHAEPEDIPLEVLYEDEHVFVINKPVGLVVHPGAGNPTGTLVNALLFRDPSLSVLPRAGIVHRLDKDTSGVMVIARTIQAQTALVEQLSAREVHRQYLAIVVGALVSGGTADAAIDRHPRDRVRMAVREDGKDAITHYRLRERFRAHTALECRLETGRTHQIRVHMAHLRHPIIGDQLYGGALKLPKGASDELVAQLRGFKRQALHAETLEFVHPITGETITNSAPPPADMQALMQALREDSKRFAELERGRR
>NZ_CP047135.1|WP_128097082.1|3262582_3263467_+|outer-membrane-protein-assembly-factor-BamD
MIRRSSLLSAPVRTAALLLVLALVATGCHRGTKGDNPDEGLPVEQIYEKSHRLMEGGNWSGAEANFRRLIAQYPYGPYTEQAMIETAYAQYKAGKHDDAVSSIDRFIRTYPTHRNIAYMYYLRGLSNGNRNTVFLRRVWSLDPSRRDLSTPHQAYADFNIVVDRYPNSRYAADARQRMIELRDVFAQHELDNALYYLRRQAWVSAAGRANYLLETYPQSAFQYDAVATLGEAYTRLGNKTLADDARRVLEMNQPEHPWLQGNWPKYPWMVRKLNPFAGEKSASTGQRNATMNRK
>NZ_CP047135.1|WP_159497676.1|3264932_3266567_-|NAD+-synthase
MASIRIAMAQFDFPVGAVAQNTDNIIAMIAEARDEYGAELVVFPELAISGYPPEDLLLRPGFLYDCEQALKRIAAATTGIAAVVGWPQATGSVVYNAASVLRDGKVEHTYRKRELPNYAVFDERRYFDVDPDGGSCVFELKGVPVGVLVCEDLWFAEPLADTVREGAQLVVVPNASPYERGKHAQRDALLAERTRESGAAIVYLNVVGGQDALVFDGASVVADGDGTVHPAAAAFTDQWLVVDYDADTRRFLPREWIDDGDESMDALAWRAVTRGIQDYCRKNGFKKVWLGLSGGIDSALVLAMAVDALGADNVTAVRLPSRYTADMSNDLAAEQCRALGVKLDAVSIEPVFEGLMAALGPMFEGQAADVTEENLQSRARGVILMALSNKFGGLLLTTGNKSEYAVGYATIYGDMCGGYAPLKDLYKTEVFGLSKWRNTVGGAPVIPPAVISRPPSAELRANQTDQDSLPAYDVLDGILYRYVDQEQSREEIVAAGYAAEVVDRVLRLVRTSEWKRHQAAPGPKVSRRAFGRERRYPISNGYKG
>NZ_CP047135.1|WP_128097080.1|3266792_3267668_-|succinate--CoA-ligase-subunit-alpha
MSVLINKNTKVIVQGFTGQQGTFHATQMIEYGTQVVGGVTPGKGGTTHIDLPVFNTVADAVSATGADASVIYVPPPYAADAILEAAAAGIKVIVCITEGIPVLDMLRVKNVLTRAHPDTVLVGPNCPGVITPGECKIGIMPGHIHMPGKIGIVSRSGTLTYEAVKQTTEVGLGQSTCIGIGGDPINGLNFVDCLKLFNEDPQTLGIIMVGEIGGDAEEAGAEYIKNHVKKPVVGFIAGASAPAGKRMGHAGAIASGGKGTAEGKFAAMEAAGVVTVRSPGDLGAAIAKLVK
>NZ_CP047135.1|WP_159497677.1|3267689_3268859_-|ADP-forming-succinate--CoA-ligase-subunit-beta
MNFHEYQSKQLLAEYGIPVPAGKVAATPDEAVEAAQSLGQGPWMVKAQIHAGGRGKAGGVKFCKTTDDVKAAAAKMLGTKMATYQTAGVELPVNLVLVTTAGEIVKELYLSVLVDRGTKTITYIASSEGGVEIEQVAAETPELIHSLNVDFVEGVQGYHGRDFGFKLGLTAKQAGQFASIMVNLYRLFNEKDLALVEINPLAILDDGNLYALDGKFDSDDNAAFRQKALVAMRDKTQEDPTEVIASELDINYVTMDGNIGCMVNGAGLAMATMDVIKLNGGEPANFLDVGGGANKQRVIEAFKLILSSDKVEGIFVNIFGGIVRCDMIAEGIIAAVKEVGVKVPVVVRLEGTNVEEGKQLLRDSGMAIIPADNINDGAKKIVEAVKNAA
>NZ_CP047135.1|WP_159497678.1|3269210_3270824_+|PAS-domain-containing-sensor-histidine-kinase
MSPSASLIDRIESIPKRELYFFALYRLLITTVIAALLFSPLSNLVGAADHPQLAFWVSGIYLLLALVILLVGRSERWLRRIVVSGVAVDIVAATLLAHALPGASAGISMSLLFNIAAAATLLPLSLGLGLAVAASAATAGEYMWKLLEGGDPTRTLAELAMFITSYLALAFVSYQVGNRARRNQQLANQRGDEVANLFQINELIIRRMRTGVLVVDGANRITLANEAASTLIGDADGNGGSGRLELGSAAPDLSRRLQRWRNGWTNEETPLQLSPDQPEVQPRFARLLAGSDLTLVFLDDSTVVSRRAESLTLSAMGRFSASLAHEIRNPLAAINYAAQLLEESTAIGDTDRRLLQIIHQQCQRTNGIVESVLGLARRERANPENLDLAAFVRRFVLEYKQGITLETDSIEPIITETSVHALVDPRHLHQILTVLVHNALKYGRVGQEPARVRLRVARQERAAVIDVMDRGPGIPESVANQLFRPFFTTSEHGTGLGLYIARELCKANQANLEYVSVPAGGACFRLVLAGPHTMLPQ
>NZ_CP047135.1|WP_159497679.1|3270912_3272298_+|response-regulator
MNDTRSALVVDDERDIRELLVLTLGRMGLRISTAANLAEARELLASNPYDLCITDMRLPDGNGIELVTEIAQHYPRTPVAMITAFGSMDLAVEALKAGAFDFVSKPVDISVLRGLVKHALELNNSERAVPAAPPSEQAARLLGDSPAMNGLRTTITKVARSQAPVYILGESGVGKELVARTIHAQSARSAGTFVPVNCGAIPSELMESEFFGHKKGSFSGAHADKPGLFQAAHGGTLFLDEVAELPLQMQVKLLRAIQEKSIRPVGAATEVPVDVRILSATHKDLGELVEDGRFRHDLYYRINVIELRVPPLRERRSDLPQLAASILARLARTHERPTPLLAPSAIDALAQYHFPGNVRELENILERALALAESDSIGASDLRLPQHATPRHGAGPAPMHEEAVVDLPAGNGALPSYIEQMERTAIQKALEENRWNKTRTAAQLGITFRALRYKLKKLGMD

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Crispr_ID: NZ_CP047135_10

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP047135_10

3359284-3359398

Orphan

Consensus_repeat	Method
GTAGTGCCGGGCTCTGCCCGGCAGCTCT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP047135_10

>merge|NZ_CP047135|10|3359284-3359398|CRISPRCasFinder
GTAGTGCCGGGCTCTGCCCGGCAGCTCTCATCCTCACCAATGCGAATGGATGATGAAAAGCACATCCGTAATGCGGCGCAAGGACACGTAGTGCCGGGCTCTGCCCGGCAGCTCT

>NZ_CP047135|10|10|3359284-3359398|CRISPRCasFinder
GTAGTGCCGGGCTCTGCCCGGCAGCTCT	CATCCTCACCAATGCGAATGGATGATGAAAAGCACATCCGTAATGCGGCGCAAGGACAC
GTAGTGCCGGGCTCTGCCCGGCAGCTCT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP047135.1\|WP_159497740.1\|3354264_3355269_-\|fructose-bisphosphate-aldolase-class-I	unknown	unknown	gnl\|CDD\|380231
NZ_CP047135.1\|WP_159497742.1\|3357781_3358957_-\|phosphoglycerate-kinase	unknown	unknown	gnl\|CDD\|234613
NZ_CP047135.1\|WP_159497744.1\|3360957_3363654_-\|DUF2339-domain-containing-protein	unknown	unknown	gnl\|CDD\|378390
NZ_CP047135.1\|WP_159497743.1\|3359593_3360958_-\|DUF3999-family-protein	unknown	unknown	gnl\|CDD\|372507
NZ_CP047135.1\|WP_038686559.1\|3365043_3365673_+\|outer-membrane-beta-barrel-protein	unknown	unknown	gnl\|CDD\|182867
NZ_CP047135.1\|WP_159497741.1\|3357116_3357782_-\|HAD-hydrolase-like-protein	unknown	unknown	gnl\|CDD\|319798
NZ_CP047135.1\|WP_159497739.1\|3351911_3352580_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP047135.1\|WP_159497738.1\|3350980_3351616_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP047135.1\|WP_038686561.1\|3363839_3364844_-\|type-I-glyceraldehyde-3-phosphate-dehydrogenase	unknown	unknown	gnl\|CDD\|223135
NZ_CP047135.1\|WP_159497746.1\|3367731_3368538_+\|MBL-fold-metallo-hydrolase	unknown	unknown	gnl\|CDD\|293810
NZ_CP047135.1\|WP_159497747.1\|3369232_3370459_-\|TonB-family-protein	unknown	unknown	gnl\|CDD\|310280
NZ_CP047135.1\|WP_159499482.1\|3352610_3353906_-\|aminopeptidase	unknown	unknown	gnl\|CDD\|341066
NZ_CP047135.1\|WP_038686579.1\|3347929_3348913_-\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|183677
NZ_CP047135.1\|WP_159497737.1\|3349117_3350077_+\|cysteine-synthase-A	unknown	unknown	gnl\|CDD\|273465
NZ_CP047135.1\|WP_159499484.1\|3368660_3369224_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP047135.1\|WP_137190198.1\|3370451_3370817_-\|BlaI/MecI/CopY-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|226207
NZ_CP047135.1\|WP_128098081.1\|3350323_3350920_+\|O-acetyl-ADP-ribose-deacetylase	unknown	unknown	gnl\|CDD\|394878
NZ_CP047135.1\|WP_128098086.1\|3355436_3356903_-\|pyruvate-kinase	unknown	unknown	gnl\|CDD\|235619
NZ_CP047135.1\|WP_159497745.1\|3366906_3367722_+\|endonuclease	unknown	unknown	gnl\|CDD\|211382
NZ_CP047135.1\|WP_137190193.1\|3366100_3366802_-\|aspartate/glutamate-racemase-family-protein	unknown	unknown	gnl\|CDD\|224707

Protein	Function_ID	Function_description	E-value
NZ_CP047135.1\|WP_159497742.1\|3357781_3358957_-\|phosphoglycerate-kinase	gnl\|CDD\|234613	PRK00073, pgk, phosphoglycerate kinase; Provisional.	0
NZ_CP047135.1\|WP_159497744.1\|3360957_3363654_-\|DUF2339-domain-containing-protein	gnl\|CDD\|378390	pfam10101, DUF2339, Predicted membrane protein (DUF2339). This domain, found in various hypothetical bacterial proteins, has no known function.	4.72449e-66
NZ_CP047135.1\|WP_159497740.1\|3354264_3355269_-\|fructose-bisphosphate-aldolase-class-I	gnl\|CDD\|380231	NF033379, FrucBisAld_I, fructose-bisphosphate aldolase class I. This family consists of fructose-bisphosphate aldolase class I. All members of the seed alignment are from prokaryotes, although class I is the common form in plants and animals. The common form in prokaryotes is class II.	0
NZ_CP047135.1\|WP_038686559.1\|3365043_3365673_+\|outer-membrane-beta-barrel-protein	gnl\|CDD\|182867	PRK10959, PRK10959, outer membrane protein W; Provisional.	8.11833e-54
NZ_CP047135.1\|WP_159497741.1\|3357116_3357782_-\|HAD-hydrolase-like-protein	gnl\|CDD\|319798	cd04302, HAD_5NT, haloacid dehalogenase (HAD)-like 5'-nucleotidases similar to the Pseudomonas aeruginosa PA0065. 5'-nucleotidases dephosphorylate nucleoside 5'-monophosphates to nucleosides and inorganic phosphate. Purified Pseudomonas aeruginosa PA0065 displayed high activity toward 5'-UMP and 5'-IMP, significant activity against 5'-XMP and 5'-TMP, and low activity against 5'-CMP. This family belongs to the haloacid dehalogenase-like (HAD) hydrolases, a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members of this superfamily include 2-L-haloalkanoic acid dehalogenase, azetidine hydrolase, phosphonoacetaldehyde hydrolase, phosphoserine phosphatase, phosphomannomutase, P-type ATPases and many others. HAD hydrolases are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.	3.9491e-89
NZ_CP047135.1\|WP_159497743.1\|3359593_3360958_-\|DUF3999-family-protein	gnl\|CDD\|372507	pfam13163, DUF3999, Protein of unknown function (DUF3999). This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are typically between 440 and 470 amino acids in length. There is a single completely conserved residue D that may be functionally important.	4.51752e-100
NZ_CP047135.1\|WP_159497746.1\|3367731_3368538_+\|MBL-fold-metallo-hydrolase	gnl\|CDD\|293810	cd07724, POD-like_MBL-fold, ETHE1 (PDO type I), persulfide dioxygenase A (PDOA, PDO type II) and related proteins; MBL-fold metallo-hydrolase domain. Persulfide dioxygenase (PDO, also known as sulfur dioxygenase, SDO, EC 1.13.11.18) is a non-heme iron-dependent oxygenase which catalyzes the oxidation of glutathione persulfide to glutathione and persulfite in the mitochondria. Mutations in ethe1 (the human PDO gene) are responsible for a rare autosomal recessive metabolic disorder called ethylmalonic encephalopathy. Arabidopsis thaliana ETHE1 is essential for embryo and endosperm development. Bacterial ETHE1-type PDOs are also called Type 1 PDOs. Type II PDOs (also called PDOAs), are mainly proteobacterial. These enzymes belong to the MBL-fold metallo-hydrolase superfamily which is comprised mainly of hydrolytic enzymes which carry out a variety of biological functions.	3.15011e-65
NZ_CP047135.1\|WP_038686561.1\|3363839_3364844_-\|type-I-glyceraldehyde-3-phosphate-dehydrogenase	gnl\|CDD\|223135	COG0057, GapA, Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase [Carbohydrate transport and metabolism].	0
NZ_CP047135.1\|WP_159497747.1\|3369232_3370459_-\|TonB-family-protein	gnl\|CDD\|310280	pfam05569, Peptidase_M56, BlaR1 peptidase M56. Production of beta-Lactamase and penicillin-binding protein 2a (which mediate staphylococcal resistance to beta-lactam antibiotics) is regulated by a signal-transducing integral membrane protein and a transcriptional repressor. The signal transducer is a fusion protein with penicillin-binding and zinc metalloprotease domains. The signal for protein expression is transmitted by site-specific proteolytic cleavage of both the transducer, which auto-activates, and the repressor, which is inactivated, unblocking gene transcription. homologs to this peptidase domain, which corresponds to Merops family M56, are also found in a number of other bacterial genome sequences.	8.37648e-40
NZ_CP047135.1\|WP_159499482.1\|3352610_3353906_-\|aminopeptidase	gnl\|CDD\|341066	cd09603, M1_APN_like, Peptidase M1 family similar to aminopeptidase N catalytic domain. This family contains mostly bacterial and some archaeal M1 peptidases with smilarity to the catalytic domain of aminopeptidase N (APN; CD13; alanyl aminopeptidase; EC 3.4.11.2), a type II integral membrane protease belonging to the M1 gluzincin family. APN preferentially cleaves neutral amino acids from the N-terminus of oligopeptides and, in higher eukaryotes, is present in a variety of human tissues and cell types (leukocyte, fibroblast, endothelial and epithelial cells). APN expression is dysregulated in inflammatory diseases such as chronic pain, rheumatoid arthritis, multiple sclerosis, systemic sclerosis, systemic lupus erythematosus, polymyositis/dermatomyosytis and pulmonary sarcoidosis, and is enhanced in tumor cells such as melanoma, renal, prostate, pancreas, colon, gastric and thyroid cancers. It is predominantly expressed on stem cells and on cells of the granulocytic and monocytic lineages at distinct stages of differentiation, thus considered a marker of differentiation. Thus, APN inhibition may lead to the development of anti-cancer and anti-inflammatory drugs. APNs are also present in many pathogenic bacteria and represent potential drug targets. Some APNs have been used commercially, such as one from Lactococcus lactis used in the food industry. APN also serves as a receptor for coronaviruses, although the virus receptor interaction site seems to be distinct from the enzymatic site and aminopeptidase activity is not necessary for viral infection. APNs have also been extensively studied as putative Cry toxin receptors. Cry1 proteins are pore-forming toxins that bind to the midgut epithelial cell membrane of susceptible insect larvae, causing extensive damage. Several different toxins, including Cry1Aa, Cry1Ab, Cry1Ac, Cry1Ba, Cry1Ca and Cry1Fa, have been shown to bind to APNs; however, a direct role of APN in cytotoxicity has been yet to be firmly established.	4.54595e-115
NZ_CP047135.1\|WP_038686579.1\|3347929_3348913_-\|LysR-family-transcriptional-regulator	gnl\|CDD\|183677	PRK12680, PRK12680, LysR family transcriptional regulator.	0
NZ_CP047135.1\|WP_159497737.1\|3349117_3350077_+\|cysteine-synthase-A	gnl\|CDD\|273465	TIGR01139, Cysteine_synthase, cysteine synthase A. This model distinguishes cysteine synthase A (CysK) from cysteine synthase B (CysM). CysM differs in having a broader specificity that also allows the use of thiosulfate to produce cysteine thiosulfonate. [Amino acid biosynthesis, Serine family].	2.1019e-166
NZ_CP047135.1\|WP_137190198.1\|3370451_3370817_-\|BlaI/MecI/CopY-family-transcriptional-regulator	gnl\|CDD\|226207	COG3682, COG3682, Predicted transcriptional regulator [Transcription].	7.30236e-40
NZ_CP047135.1\|WP_128098081.1\|3350323_3350920_+\|O-acetyl-ADP-ribose-deacetylase	gnl\|CDD\|394878	cd02908, Macro_OAADPr_deacetylase, macrodomain, O-acetyl-ADP-ribose (OAADPr) family. Macrodomains are found in a variety of proteins with diverse cellular functions, as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Macrodomains can recognize ADP-ribose (ADPr) in both its free and protein-linked forms, in related ligands, such as O-acyl-ADP-ribose (OAADPr), and even in ligands unrelated to ADPr. This family includes eukaryotic macrodomain proteins such as human MacroD1 and MacroD2, and bacterial proteins such as Escherichia coli YmdB; these have been shown to be O-acetyl-ADP-ribose (OAADPr) deacetylases that efficiently catalyze the hydrolysis of OAADPr to produce ADP-ribose and free acetate. OAADPr is a sirtuin reaction product generated from the NAD+-dependent protein deacetylation reactions and has been implicated as a signaling molecule. By acting on mono-ADP-ribosylated substrates, OAADPr deacteylases may reverse cellular ADP-ribosylation.	4.25341e-91
NZ_CP047135.1\|WP_128098086.1\|3355436_3356903_-\|pyruvate-kinase	gnl\|CDD\|235619	PRK05826, PRK05826, pyruvate kinase; Provisional.	0
NZ_CP047135.1\|WP_159497745.1\|3366906_3367722_+\|endonuclease	gnl\|CDD\|211382	cd11010, S1-P1_nuclease, S1/P1 nucleases and related enzymes. This family summarizes both S1 and P1 nucleases (EC:3.1.30.1) which cleave RNA and single stranded DNA with no base specificity. S1 nuclease is more active on DNA than RNA. Its reaction products are oligonucleotides or single nucleotides with 5' phosphoryl groups. Although its primary substrate is single-stranded, it may also introduce single-stranded breaks in double-stranded DNA or RNA, or DNA-RNA hybrids. It is used as a reagent in nuclease protection assays and in removing single stranded tails from DNA molecules to create blunt ended molecules and opening hairpin loops generated during synthesis of double stranded cDNA. P1 nuclease cleaves its substrate at every position yielding nucleoside 5' monophosphates, and it does not recognize or act on double-stranded DNA. It is useful at removing single stranded strands hanging off the end of double stranded DNA and at completely cleaving melted DNA for simple DNA composition analysis.	9.0503e-87
NZ_CP047135.1\|WP_137190193.1\|3366100_3366802_-\|aspartate/glutamate-racemase-family-protein	gnl\|CDD\|224707	COG1794, RacX, Aspartate racemase [Cell envelope biogenesis, outer membrane].	6.15319e-105

>NZ_CP047135.1|WP_159497742.1|3357781_3358957_-|phosphoglycerate-kinase
MSIVRMTDLDLSGKRVLIRQDLNVPIENGRITSEQRITASLPTLKLALEKGAAVMVTSHLGRPTEGVWSEAESLAPVALRLSQLLGVPVPLVRDWVDGVDVAPGAIVLLENCRMNVGEGKDDETLARKYAALCDVFVMDAFGTAHRAQASTHGVIRFAPIAAGGPLLMAELDALAKALLAPAQPLLAIVAGSKVSTKLELLSSLVGKVDQLIVGGGIANTFIAAAGYPVGKSLYEPDLLDTAKKIVADAKARGADIPLPTDVVVAKQFLPDAEATVKAVADVAEDDLILDIGPDTAQHYAGLIAKAGTVVWNGPVGVFEFEAFSHGTQALAQAIAASPAFSIAGGGDTLAAVDKYDIADQVSYISTGGGAFLEFLEGKTLPAVAALEARGA
>NZ_CP047135.1|WP_159497741.1|3357116_3357782_-|HAD-hydrolase-like-protein
MTLGRHAFVPRATLFFDLDGTLIDSAVGITQCVAHALTRMDQPVPPQDELRRWIGPSLRTSFAPLFANPADIEQAVTYYRERFDVVGWREHEVYPRIGQVVQELHDRGHRLAIVTAKNEPHARRIIDHLPFGSCFEDVIGATIDGSRSEKPQLVAEALQRLSLTPDQCWMIGDRRMDIAGARHHAMRNIGVLWGFGGADELQLAGAQHLANTPDDLLTLLA
>NZ_CP047135.1|WP_128098086.1|3355436_3356903_-|pyruvate-kinase
MIERQRRTKILATLGPATDPPGVLEDLFRAGVNVVRLNFSHGDPSGQAKRAADVRAAAQRVGVEVGILADLPGPKIRIERFAEGKIHLKAGDRFDLVAAANPPPGDTTQVGVSYLGLPQDVVAGDVLLLDDGLMQLQVLEVQGERIINTVLNDGVLSDRKGLNKQGGGLSLGALTERDKELIGIVAKIGVDFIAVSFCRNAQDMNDARAIAESHGCYAALVSKIERTEAIENLEEIVDASDVVMVARGDLGVEIGDAELPGLQKKIIKASLAQNKVVITATQMLQSMVESPIPTRAEVLDVANSVIDGTDAVMLSAETAAGMYPVKAVEAMARICLGAERQFQTETDFGASPRNLERADQAIAMATMFLSQHVGVRAIVAMTESGGTARYLSRFRASAPVFAVTRHDGARRQMALMRDVFPINFDSRGFTPREAARGSIRLLVEANQLQAGDRVVFTSGEHMETHGATNTLRLLEVGEDGRASGLGDL
>NZ_CP047135.1|WP_159497740.1|3354264_3355269_-|fructose-bisphosphate-aldolase-class-I
MSIEQLAETAQAMVAPGKGIIAIDESTGTIGKRFASVGLENTEENRRAYREMLLTTPKLNEHVSGAILYDETIRQSTKDGVPFAKYMADHGIIPGIKVDKGAHALAGCPGELVTEGLDGLRERLQEYYKLGARFAKWRAVINIGESIPSGTCIESNAHALARYAALCQECGLVPMVEPEVIMDGDHDIETCYEVTEATLRSLFDALYQQNVLLEGTILKASMVISGKGCEEQADVEEVAESTVMCLKSTVPAILPGVVFLSGGQSDEQSTAHLNAMNQMGNLPWPLSFSYGRAMQQAALKLWAKDTKANIAKAQQTVYDRAKENGQAALGKWNG
>NZ_CP047135.1|WP_159499482.1|3352610_3353906_-|aminopeptidase
MPLLFAVRAHASAPRAFDVISYEVALEPDIQQKRLQGKVTVWFDAVQRVQTLTLDAGELDIASVTQGGRALQFEQTNGRLRITLAEPIPSGAFGNVRIAYSGAPRFGLEFAPERDEVYSVFSTSQWMPSVDAPDERARLHLSLTLPAGLLAAGSGRAEPPRTLADGRIEHRWSSDSALPAYVYGFAAGRYQEATRQHAAIALRFLSVDRTPAQLQTLFARTGDMLDFFAARAGLPYRGESYQQALVKSTIGQEMTGLSLMSEAYGQGVLDDPDDTALMAHEAAHQWWGNRVTCASWQHFWLNEGMANFMTAAYLQHAQGEAAYQAQVQGWRTRLDALRAKGADHALVYASWDAPTADDRAVVYRKGAYVLHLLRGELGEDAFWRGLRDYTVANDGRSVTTLDFQHAMEKAAGRSLQPFFRQWVYSADTTAR
>NZ_CP047135.1|WP_159497739.1|3351911_3352580_+|hypothetical-protein
MRKGSTRWGIGLAVVVLLVGAWYVLQPRSVANLPGVGAAASATSGTRPPQLPHNRHDAGAPAAQQASPSMAHASSATPYLAFESAMLQGSALSFDQAMLALQGDAFDHYLSLIAQQSMRVPEAAELTDAYSRTMQAALKDTPGLSMQNFACGLSLCAGTISTDSRTDAAQVEQWRQSLSLAGNTPAYLMIDVTVDGKDGRVEHRFIFSSDASINGIHGPSLP
>NZ_CP047135.1|WP_159497738.1|3350980_3351616_-|hypothetical-protein
MKRQLFPGVVAVLVAGGLLAGAAFAATQTITASTRNGGSTPGSATATSASRVTCTQASGATAGTIPRCSLQAPGWNGVVEVGKSIGTTGAGNVVLNCNGSYPANGGLSCTAQIDDTVCTASQTISGSASGGSSYRGLAAVKANATIQCVSATGGTGGTTCGIQAPGANASMTAGQTITSSGPGTVALSCGGQYPASGGGLNCTAQITQVCP
>NZ_CP047135.1|WP_128098081.1|3350323_3350920_+|O-acetyl-ADP-ribose-deacetylase
MKIEVWQGDITTLAVDAIVNAANESLLGGGGVDGAIHRAAGPALLAECQALPEIRPGMRCPTGEVRATAAYNLPARHVIHTVGPVWQDGQRDEPALLANCYWKSLQLAETLGLQSIAFPAISCGVFGYPIHQAAQVAVTETLAWQRSHAQPKRIVLVAFNTATAKAYLQALASAGQAADEPRPLVMPPLGDAGLAASH
>NZ_CP047135.1|WP_159497737.1|3349117_3350077_+|cysteine-synthase-A
MALYNSILDTIGNTPVVRLNRIAPDHVTVYAKVESFNPGGSVKDRLALAIILDAEARGVLKPGDTIVEATSGNTGVALAMVAAARGYKFVATMVETFSIERRKLMRAYGAKVILTPAAERGSGMVRRARELADEHGWFLASQFANPANPAYHRNTTAPEILRDFAGKRLDYFVTGWGTGGTLTGVGEVLKVARPDTRIIATEPTGAALLKGEEWKPHKIQGWTPDFVPEVLNRGVYDELLTVDDARAIETSRRLAAEEGIFVGISAGATVASALDIADRAEKGSVILAMLPDTGERYFSTPLFADINEGSDDDWLAGLP
>NZ_CP047135.1|WP_038686579.1|3347929_3348913_-|LysR-family-transcriptional-regulator
MTLTQLRYLVAIADAELNITLAASRVHATQPGLSKQLKQLEDELGFLLFVRKGRSLEAVTPAGVEVIGRARAVLGEANNIRTYAANQRRESQGQLVLTTTHTQARFVLPPAVAKIKQAYPQVSVHLQQAAESDALDLLSQGDADIAIISTAGAEPSAGIAIPLYRWRRLVLVPRGHVLDRPGAAPDLQALSTQPLISYESSTRGSSSLQRAFASAGLTPDIALTALDADLIKTYVRTGLGVGLLAEMAVNASDEDLRAWPAPAPIDECIAWAVLPRDRVLRDYALELVHVLAPQIDTRDLRRVIDGNQEANWPLPPTWESLTQTITV
>NZ_CP047135.1|WP_159497743.1|3359593_3360958_-|DUF3999-family-protein
MTLRTLIAVLSLAAVPSLAQSADARQDYRQQWPLQLSQPQAGAYRVMLNEAVYRSAVSPRLADVQVFNVQGQALPTTLLSADQPLARPAQWQDLAWFPLPAMAGAGADDLQLLTERNTDGSVRRVEARLGRSGGGSAQAAGWLIDASALKVGVQALRLDWQVQSSLQARVRVEASDDLRQWQRIADDVPLVDLQHDGRRLQQRRIEIGRQARYFRILPIGADALPVLSNVQAELAPALEAIDWRWESLAGAAGKPGEFEYQLQGRFPIAQVDISTADNSVVQWTLLSRDDTAQPWQVRAGPWVAYQVQDAAERRRSQTQSLPVPTRDRYWKLVAAQAEPNQAPTLKLGYQPEALVFLSQGEPPYSVAAGSVRAGRSDAPVGTVIAQLRAQQGAQWQPAAATLQGQAQVLGGDAAVAPQRDWKQWLLWGLLVLGVLIVGGFAVSVLRQKPGDVGG
>NZ_CP047135.1|WP_159497744.1|3360957_3363654_-|DUF2339-domain-containing-protein
MEALIALVAVVLLLIPVLLIVALVMIAGLRRRVAALELQQFDGRPAHVADPARAEAPGARSVHWADQPYQARAPVAAAAGPPANATGPSLPEATASTAPVEAAAPAPVAPPSRPPPLLPAPSTPPSPSGPGLGEPIVGAIKHWFTDGNVPVKIGMLVLLAGVAALLKYASDQGWLNAPIELRLAAIAAAALGGLVFGWVQRDRRRLFALALQGGAIGVLLLTIFAAFKRYDLIDALPAFAMSVLLIAGMGVLAVVQNSRTLAVLGILAGFMAPIWLSTGSGNHVALFSYYAVLNAAILAIAWWRPWRVLNLLGFAFTFGIGTAWGVLQYNADKFSSTEPFLLLFFAFYLLIPILYGRRQPAETRDLVDGSLVFGTPLIAFSLQAGMLHDDRLALSLCALGLAALYAVLGWALIRRPRYAALGQSHAVLAVGFATLAVPLALSARATASVFALEGAGLVWLGLRQKRWLPQIAGALLQLGAAFGFVVGADYWHSDATAIANPTFMSGLLLAVAGFASAWCYRRARQDSPAIVYYLWGLLWWLGGVIHEVGRFVDRDSRPDALLIAVAFSAWVAAEVHRRAPARALVLTTLAMLLAAFPLALWQADVHQQPFAGYGALAWAVFALLGVRSLWCLRGGQDRVALAAQFSWWLLWPSVVSLACMWLADRFALAQGWSLALALLPWLLVAATALLRWPWLAMPLGARFDVLRSALTATLFGVLGVSWLCLLVQPASPAPLPWLPLLNPMELAQLAVLALAARWLWSAPAPAGLRGQRVPVLAIAGFALLTSTTLHSVHHWGGVAWNDALWSSTLAQTSLTLVWSVLGVISWVWGSRRGQRTLWLVGAVLMGVVLAKLVLIDRQHLGNLLGISSFIAYGLLCTVVGYLAPAPPRAPDVTVEPQS
>NZ_CP047135.1|WP_038686561.1|3363839_3364844_-|type-I-glyceraldehyde-3-phosphate-dehydrogenase
MAIKVGINGFGRIGRNVLRSAVLNFGNDIEIVAINDLLEPDYLAYMLKYDSVHGRFKADVEVSGSDLLVNGKKIRLTQERDPANLKWDEVGVDVVIESTGLFLTKDTAQKHIDAGAKKVILSAPSKDDTPMFVFGVNDSTYAGQAIISNASCTTNCLAPLAKVINDKWGIKRGLMTTVHAATATQKTVDGPSNKDWRGGRGILENIIPSSTGAAKAVGVVIPELNKKLTGMSFRVPTSDVSVVDLTVELEKEATYAEICAEVKAQSEGALKGILGYTEDKVVATDFRGETHTSVFDADAGIALDSTFVKLVSWYDNEWGYSNKCLEMAKVVAAK
>NZ_CP047135.1|WP_038686559.1|3365043_3365673_+|outer-membrane-beta-barrel-protein
MRNTSPLLLSALAAALALAAAPAMAQSKGDWTIGAGVHQVAPKSNNGSLAGGTLKVDVDNDVKPTITGEYFIADNLGIEILAALPFKHDINIAGLGNVGSTKHLPPVVSLQYHFNSKGKVSPFVGAGINYTTFFSEKTSGALAGSKLKMDDSWGLAAHAGLDFAINDKGSLRVDVRWMDIDSKVKLDGEKIGTVNIDPLAYGVSYVFKF
>NZ_CP047135.1|WP_137190193.1|3366100_3366802_-|aspartate/glutamate-racemase-family-protein
MQKVLGLIGGMSWESSAHYYRMINEQVRDALGGMHSARMLLWSFDFADIEAMQRAGDWAAATAAMVDVARRLQGAGATALVICTNTMHLMADEVQAAVEVPLLHIADPVGEAIGALGLARVGLLGTAFTMEQDFYRVRLAQRHGLEVLVPDADDRAQVHRIIYEELVQGRVLDSSRAVYRAVMQRLVDRGAQAIILGCTEIMLLVGDEDATVPLFDTAALHAQAAARHLLAPR
>NZ_CP047135.1|WP_159497745.1|3366906_3367722_+|endonuclease
MKIASLIPATALALALTLVSTDALAWGAQGHRLVARVAETRLTPAAQAEVNRLLASEPDPTLHAIAPWADQLRAKDPGLGKRSARWHYVNIGEDNCHYEVQKHCKGGNCIVEALKVQTAILGDRSKSDAERAQALKFVVHFTGDIHQPMHAGYGHDKGGNDFQVQFNNRGTNLHSLWDSGMLNELKLDDDQYLKRLMALPAPKLGKRSSINTDAVQWAEASCRIAIAPGVYPGKRTLAPEYAATYRPVAEQELRLAGERLAVLLNATLGKR
>NZ_CP047135.1|WP_159497746.1|3367731_3368538_+|MBL-fold-metallo-hydrolase
MSLHVASFFHPDSHTFSYVVHDPATLQAAVIDPVLDYDPDTDALGSGPLQPLLAHVQDNALQVHWLLETHAHADHVSAGRWLRQQWPQATLAMGDGIVQVQKTFAPRYALDVATDGSQFDHLFADGEHFALGGIDAEVIAVPGHTSDSVAYRIGDALFTGDSLFMPDGGTARCDFPGGDAAQLYRSIQRLLALPDATRVFICHDYGPGGRAVANQTTIGEQRARNIHLRDGVSEADFVATRQARDATLAEPKLMHPSVKANIQGGPPK
>NZ_CP047135.1|WP_159499484.1|3368660_3369224_-|hypothetical-protein
MRAVTLTLLVSGCAAHQPLTTTDTVDTRTENVNLQRLRSDGDGGAGAVQPYQLQSSQGYRMPQLYAAPDPVLGDRDPRRELAPTMVCLQVVVDAEGRVERSLALLDRAECKAGGMPENAPLVEAAQAAVAQWRYSPAAVCHYPAGHVPGDRSDCTGAERVDPVPVSLLYAFTFEIVKGKQTVHRQGR
>NZ_CP047135.1|WP_159497747.1|3369232_3370459_-|TonB-family-protein
MAETLNALLQASVWLAITVVLLAAVRPLLLALGGAALVYRSWWCVPVLLVALHLPLPMGPMVDALPVLAAAVAWTAPVVVPAAPVWPWLLLLAWALGALGMGGASWRAQRRFERAMGTLRPRADGTWQASADPGLPALVGLWAPRIVVGPAFEADFSPAEQHLILQHERSHRRHGDPWANAVLALLRCVFWFHPLLPWAARRFLRDQELACDARTVDPHPALRRLYANALLKAQLVHPVAPMACHWRSQPMLKERIAMLKEHKRNALPWMTGQVLVMGLCVGMGTVAWASQGGAGAGPSTSAEPAALANAAAGDVDAEALTTAPPTYPKAAFDQGLSGKVVLRVEVDASGKVGNVRVLSSTPAGVFDAASVAAAKEWTFAPARRNGTAVASALKIPMTFELNASGPTQ
>NZ_CP047135.1|WP_137190198.1|3370451_3370817_-|BlaI/MecI/CopY-family-transcriptional-regulator
MSQISEAEAVVMDVLWRSHPLGADEVVAALAERDWAEPTIKTLLNRLLTKGAISASRDGRRYLYSPVLQRQAWVAEQSSGMLDKLFDGRVAPLVAHFSQRGALSPQDIAELKALIEGLDHG

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Crispr_ID: NZ_CP047135_11

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP047135_11

3642638-3642865

Orphan

Consensus_repeat	Method
GTAGTTGCCGACCGTTGGTCGGCACACC	CRISPRCasFinder

3 spacers

The CRISPR arrays of NZ_CP047135_11

>merge|NZ_CP047135|11|3642638-3642865|CRISPRCasFinder
GTAGTTGCCGACCGTTGGTCGGCACACCGACAGGGTAGCTGCCGACCGTTGGTCGGCACACCGACAGGGTAGCTGCCGACCGTTGGTCGGCACACCAAAGAGAAAAAGACCGGCACCCGCCGGTCTTTTTTTGCCTCGGCTGTCCGCCGGCTCGGTAGTGCCGGCCGCTGGCCGGCTCCCCATGACCCATCCAAACACCGGTAGGCGCCGACCGTTGGTCGGCGCCCC

>NZ_CP047135|11|11|3642638-3642865|CRISPRCasFinder
GTAGTTGCCGACCGTTGGTCGGCACACC	GACAGGGTAGCTGCCGACCGTTGGTCGGCACACCGACAGG
GTAGCTGCCGACCGTTGGTCGGCACACC	AAAGAGAAAAAGACCGGCACCCGCCGGTCTTTTTTTGCCTCGGCTGTCCGCCGGCTC
GGTAGTGCCGGCCGCTGGCCGGCTCCCC	ATGACCCATCCAAACACCG
GTAGGCGCCGACCGTTGGTCGGCGCCCC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP047135.1\|WP_159497919.1\|3636602_3638780_-\|tail-specific-protease	unknown	unknown	gnl\|CDD\|236873
NZ_CP047135.1\|WP_128097599.1\|3652056_3652542_-\|rod-shape-determining-protein-MreD	unknown	unknown	gnl\|CDD\|225444
NZ_CP047135.1\|WP_159497913.1\|3629467_3631285_-\|PAS-domain-S-box-protein	unknown	unknown	gnl\|CDD\|226702
NZ_CP047135.1\|WP_159497925.1\|3649991_3652055_-\|penicillin-binding-protein-2	unknown	unknown	gnl\|CDD\|274573
NZ_CP047135.1\|WP_159497920.1\|3640409_3641117_-\|lipoyl(octanoyl)-transferase-LipB	unknown	unknown	gnl\|CDD\|237681
NZ_CP047135.1\|WP_159497924.1\|3648882_3649995_-\|rod-shape-determining-protein-RodA	unknown	unknown	gnl\|CDD\|274033
NZ_CP047135.1\|WP_159497916.1\|3633611_3634517_-\|decarboxylating-6-phosphogluconate-dehydrogenase	unknown	unknown	gnl\|CDD\|236582
NZ_CP047135.1\|WP_159497926.1\|3652538_3653735_-\|rod-shape-determining-protein-MreC	unknown	unknown	gnl\|CDD\|237560
NZ_CP047135.1\|WP_159497914.1\|3631934_3632312_-\|BON-domain-containing-protein	unknown	unknown	gnl\|CDD\|225379
NZ_CP047135.1\|WP_159497922.1\|3645644_3646790_-\|lytic-murein-transglycosylase-B	unknown	unknown	gnl\|CDD\|274066
NZ_CP047135.1\|WP_159497917.1\|3634535_3635756_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP047135.1\|WP_159497927.1\|3655196_3656135_+\|carbohydrate-kinase-family-protein	unknown	unknown	gnl\|CDD\|238917
NZ_CP047135.1\|WP_038686203.1\|3643101_3644316_-\|D-alanyl-D-alanine-carboxypeptidase	unknown	unknown	gnl\|CDD\|224600
NZ_CP047135.1\|WP_159497923.1\|3647547_3648678_-\|rod-shape-determining-protein-RodA	unknown	unknown	gnl\|CDD\|274033
NZ_CP047135.1\|WP_128097003.1\|3641104_3641383_-\|DUF493-family-protein	unknown	unknown	gnl\|CDD\|179161
NZ_CP047135.1\|WP_159497915.1\|3632480_3633524_+\|oxidoreductase	unknown	unknown	gnl\|CDD\|183212
NZ_CP047135.1\|WP_159497921.1\|3644421_3645648_-\|septal-ring-lytic-transglycosylase-RlpA-family-protein	unknown	unknown	gnl\|CDD\|223868
NZ_CP047135.1\|WP_038686189.1\|3653864_3654911_-\|rod-shape-determining-protein	unknown	unknown	gnl\|CDD\|237562
NZ_CP047135.1\|WP_159497918.1\|3635826_3636462_-\|DUF2242-domain-containing-protein	unknown	unknown	gnl\|CDD\|378349
NZ_CP047135.1\|WP_038686209.1\|3639381_3640392_-\|lipoyl-synthase	unknown	unknown	gnl\|CDD\|235493

Protein	Function_ID	Function_description	E-value
NZ_CP047135.1\|WP_159497919.1\|3636602_3638780_-\|tail-specific-protease	gnl\|CDD\|236873	PRK11186, PRK11186, carboxy terminal-processing peptidase.	0
NZ_CP047135.1\|WP_128097599.1\|3652056_3652542_-\|rod-shape-determining-protein-MreD	gnl\|CDD\|225444	COG2891, MreD, Cell shape-determining protein [Cell envelope biogenesis, outer membrane].	1.35069e-26
NZ_CP047135.1\|WP_159497913.1\|3629467_3631285_-\|PAS-domain-S-box-protein	gnl\|CDD\|226702	COG4251, COG4251, Bacteriophytochrome (light-regulated signal transduction histidine kinase) [Signal transduction mechanisms].	4.90738e-59
NZ_CP047135.1\|WP_159497925.1\|3649991_3652055_-\|penicillin-binding-protein-2	gnl\|CDD\|274573	TIGR03423, pbp2_mrdA, penicillin-binding protein 2. Members of this protein family are penicillin-binding protein 2 (PBP-2), a protein whose gene (designated pbpA or mrdA) generally is found next to the gene for RodA, a protein required for rod (bacillus) shape in many bacteria. PBP-2 acts as a transpeptidase for cell elongation (hence, rod-shape). [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan].	0
NZ_CP047135.1\|WP_159497920.1\|3640409_3641117_-\|lipoyl(octanoyl)-transferase-LipB	gnl\|CDD\|237681	PRK14342, PRK14342, lipoyl(octanoyl) transferase LipB.	4.84633e-140
NZ_CP047135.1\|WP_159497924.1\|3648882_3649995_-\|rod-shape-determining-protein-RodA	gnl\|CDD\|274033	TIGR02210, Rod_shape-determining_protein_RodA, rod shape-determining protein RodA. This protein is a member of the FtsW/RodA/SpoVE family (pfam01098). It is found only in species with rod (or spiral) shapes. In many species, mutation of rodA has been shown to correlate with loss of the normal rod shape. Note that RodA homologs are found, scoring below the cutoffs for this model, in a number of both rod-shaped and coccoid bacteria, including four proteins in Bacillus anthracis, for example. [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan, Cellular processes, Cell division].	4.38724e-143
NZ_CP047135.1\|WP_159497916.1\|3633611_3634517_-\|decarboxylating-6-phosphogluconate-dehydrogenase	gnl\|CDD\|236582	PRK09599, PRK09599, NADP-dependent phosphogluconate dehydrogenase.	0
NZ_CP047135.1\|WP_159497926.1\|3652538_3653735_-\|rod-shape-determining-protein-MreC	gnl\|CDD\|237560	PRK13922, PRK13922, rod shape-determining protein MreC; Provisional.	1.4569e-84
NZ_CP047135.1\|WP_159497914.1\|3631934_3632312_-\|BON-domain-containing-protein	gnl\|CDD\|225379	COG2823, OsmY, Predicted periplasmic or secreted lipoprotein [General function prediction only].	5.29159e-16
NZ_CP047135.1\|WP_159497922.1\|3645644_3646790_-\|lytic-murein-transglycosylase-B	gnl\|CDD\|274066	TIGR02282, Membrane-bound_lytic_murein_transglycosylase_B, lytic murein transglycosylase B. This family consists of lytic murein transglycosylases (murein hydrolases) in the family of MltB, which is a membrane-bound lipoprotein in Escherichia coli. The N-terminal lipoprotein modification motif is conserved in about half the members of this family. The term Slt35 describes a naturally occurring soluble fragment of MltB. Members of this family never contain the putative peptidoglycan binding domain described by pfam01471, which is associated with several classes of bacterial cell wall lytic enzymes. [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan].	1.5292e-140
NZ_CP047135.1\|WP_159497927.1\|3655196_3656135_+\|carbohydrate-kinase-family-protein	gnl\|CDD\|238917	cd01942, ribokinase_group_A, Ribokinase-like subgroup A. Found in bacteria and archaea, this subgroup is part of the ribokinase/pfkB superfamily. Its oligomerization state is unknown at this time.	3.93522e-116
NZ_CP047135.1\|WP_038686203.1\|3643101_3644316_-\|D-alanyl-D-alanine-carboxypeptidase	gnl\|CDD\|224600	COG1686, DacC, D-alanyl-D-alanine carboxypeptidase [Cell envelope biogenesis, outer membrane].	2.67757e-149
NZ_CP047135.1\|WP_159497923.1\|3647547_3648678_-\|rod-shape-determining-protein-RodA	gnl\|CDD\|274033	TIGR02210, Rod_shape-determining_protein_RodA, rod shape-determining protein RodA. This protein is a member of the FtsW/RodA/SpoVE family (pfam01098). It is found only in species with rod (or spiral) shapes. In many species, mutation of rodA has been shown to correlate with loss of the normal rod shape. Note that RodA homologs are found, scoring below the cutoffs for this model, in a number of both rod-shaped and coccoid bacteria, including four proteins in Bacillus anthracis, for example. [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan, Cellular processes, Cell division].	9.29166e-137
NZ_CP047135.1\|WP_128097003.1\|3641104_3641383_-\|DUF493-family-protein	gnl\|CDD\|179161	PRK00907, PRK00907, hypothetical protein; Provisional.	2.44129e-56
NZ_CP047135.1\|WP_159497915.1\|3632480_3633524_+\|oxidoreductase	gnl\|CDD\|183212	PRK11579, PRK11579, putative oxidoreductase; Provisional.	9.5633e-131
NZ_CP047135.1\|WP_159497921.1\|3644421_3645648_-\|septal-ring-lytic-transglycosylase-RlpA-family-protein	gnl\|CDD\|223868	COG0797, RlpA, Lipoproteins [Cell envelope biogenesis, outer membrane].	3.36794e-50
NZ_CP047135.1\|WP_038686189.1\|3653864_3654911_-\|rod-shape-determining-protein	gnl\|CDD\|237562	PRK13927, PRK13927, rod shape-determining protein MreB; Provisional.	0
NZ_CP047135.1\|WP_159497918.1\|3635826_3636462_-\|DUF2242-domain-containing-protein	gnl\|CDD\|378349	pfam10001, DUF2242, Uncharacterized protein conserved in bacteria (DUF2242). This domain is found in various hypothetical bacterial proteins, and has no known function.	1.13547e-64
NZ_CP047135.1\|WP_038686209.1\|3639381_3640392_-\|lipoyl-synthase	gnl\|CDD\|235493	PRK05481, PRK05481, lipoyl synthase; Provisional.	0

>NZ_CP047135.1|WP_128097003.1|3641104_3641383_-|DUF493-family-protein
MEITSDNPDHGFQFPGQFELSAMGAAGQELERELPRLLEQAGVEVLTERVSWKHSSNGKYVSVRLVFKADSREQYDAAHAALRDHPEVKWTL
>NZ_CP047135.1|WP_159497920.1|3640409_3641117_-|lipoyl(octanoyl)-transferase-LipB
MDAVAACDSVPSPGARPPQPARVRQLGRQPYAPVWHAMQRFTDNRDDSTADELWVVEHDPVFTLGQAGKDEHVLAPGDIPVLHVDRGGQVTYHGPGQIVVYPLLQLRRLGIGVRDYVCRIEQAIIDTLDEWNIGAERLDGAPGVYVGGAKVAALGIRVRRGCTFHGLAFNVAMDLEPFHRINPCGYQGLQVTSVVDLGGPSGMAAVTPVLLGHLARQFGLDLQPTTDLPDLTEAA
>NZ_CP047135.1|WP_038686209.1|3639381_3640392_-|lipoyl-synthase
MTETTARLIPLQIVQGDTPSVAPLQTGVKQLGGDKIGRSPVQFADAPVLRKPSWIRVRIPSGNAVQTLKAKLRENRLVTVCEEASCPNIHECFSHGTATFMILGEVCTRRCSFCDVAHGRPKPPDANEPASLSQTVADMGLKYVVVTSVDRDDLRDGGAQHFADCIGAIREKSPNTRIEVLTPDFRGKGRMERALDILATNPPDVFNHNIETVPDLYRNVRPGADYQWSLTLLKNFKAQHPSIATKSGIMLGLGEDLDQVRATMRDLRAHDVDMITIGQYLQPTPHHHPVLRYWTPDDYKALEVYGYELGFSHVASGPMVRSSYHADVQAKGAGVA
>NZ_CP047135.1|WP_159497919.1|3636602_3638780_-|tail-specific-protease
MKFKAPAFLMALALTAPLALAAYADSPALPSAATPDQVTTSKLVYGLLSDSRYAYRPRALDAATSKDVFKRYLEALDGSKQFFTQADITRFAPFEANIATAIRGGELEPAFQVFAVYKQRVGERVGYARKLLKQDFDFSSDEKFEYDRKDVPWAASNAELDDLWRKSVKNDWLRLKLAGKQPAEIRKTLDKRYATLEKSVNELKGEDVFQFFLNSYTSAVDPHTDYFTPRTAENFNQAMSLSLEGIGAQLQRQDDMVVIREVIAGGPVAVNGTLKAGDRIVGVGQGKSGPIEDVIGWRIDDVVAKIRGKADTQVRLEFIPAEEGVDGKHHTLVLTRQKVRLAEQAAKGETLTIPAKDGEPARKVGVIKLPTFYQDFEGRRRNATDYASATRDVAKLLAGFKTDKLDGVVLDLRNNGGGSLDEAIELTGLFIEQGPVVQVRESGGRVTVNSDRSEAVAWDGPLAVLINRGSASASEIFAGAIQDYGRGLVIGETTFGKGTVQNIVDLDRWPTGEAQRYGQVKLTIAQFFRVSGSSTQHKGVVPDLAFPASVDASEYGESTYDNALPWTRIAAVPHTQYGNFGPLLPKLETRHASRIAADKEFQWWNEDVEQFRAEKAKKYISLNEAERRAEREKQDKQRVDRQVIRKQLGLDLDPLADDSNDDGLTGNERDIVKDAAREKAAEKRPDPLLRESAAILADAVNLLETDRPLSAQVLPQSTGVGRWAD
>NZ_CP047135.1|WP_159497918.1|3635826_3636462_-|DUF2242-domain-containing-protein
MRLSHVIPAGLLAVSLTACGGRAADSTLIRESFDSGDTYSRTVPGAPAQACEAARRTLLSQGYAIARADTAAVEGNKNFQPRDEEHEQLVLRISCAPRGDQALVFVSAVQDRYALKKSPTSASVGVGALGSVSLPFGSNDDSLVKVASSTVQDAQFYRRFFDRLQQYLPVVPATPPPAPVEPTPPAPPAAAPTPVPEPGPAPAADTPVPTH
>NZ_CP047135.1|WP_159497917.1|3634535_3635756_-|hypothetical-protein
MLCAAIGTAAAAPGPTCTQALLEELGWRIVDAPVATPVIHGGPVCTRATLPLAQQAGDLRVQVPQAWTADQRAEWLTGLFDDPATRCAYMFKLGQATRRAATQLQDNPGYRFSALQLGWIGFGARGAQAQGWQRFRSFGRGYQPAGANSAALQHFYDGRVRSECGVGRQVAQLATQRELYGDAAFDAEFSPGELSIGTFLTLHDTDSILLGRHAGAFLADGKAVKTAQLGRQAFVGAPGFIEHVFDKRYLDDINNQAENFVVVDVSTAAAEALRVHGGFAHYDTINRQIWALAQRMPGPGPRRFERLLIERDPVWRNGLPAEQKPLLAELDALLDDPFYQGFVIYVHPRGIRPVRYHIARLLDRNPRTPFAFELGLHNLHTTLYRRWIDARIRQCDSPSAAPPHHN
>NZ_CP047135.1|WP_159497916.1|3633611_3634517_-|decarboxylating-6-phosphogluconate-dehydrogenase
MDIAMIGLGKMGANMAERLHRGGHRVIGVDPGEGARDSAAKRGFQVSASIADTLAQLPVPRVVWLMVPAGEVVDQTLAALAPHLSEGDVVIDGGNSYYKDSMRRAEQLKGEEVTYIDCGTSGGVWGLEEGYSLMIGGEAAAVEQVGAIFRTLAPAQDRGWAHVGPSGAGHFCKMVHNGIEYGMMQAYAEGFALMQHKTDFNLDLAQVARAWQHGSVVRSWLLDLSADALERNPQLDGIAPYVEDSGEGRWTVAEAIDLDVPAPVITLSLLERLRSREKNSFSDRLLAAMRNEFGGHAIKTR
>NZ_CP047135.1|WP_159497915.1|3632480_3633524_+|oxidoreductase
MTTRLQVGLIGYGLAGSVFHAPLIQHTPGLALHSIASSQRDRLLRSFTDVRICNQPAELFNDPALDAVVIATPNAEHAPLAIAALQAGKHVLVDKPFALDLTEAEAVVRAAQGAERVVTVFQNRRFDADFLTLQQLLADGVLGEVAECHSHFDRYRPQVRDRWRESDAPGAGLWMDLGPHLLDQMLQLFGWPQAISADLMAQRDGARSDDYFHAVLHYPRHRAIVHAGSLVAAARPRFAVHGGLGSYLKHGRDVQEDQLREGIAPGAPGWGLDPVHGQHVSVDAAGHEHAASVDNALGDYRRLYAAFRDAMLGTGAPTVSAEQALQLMRLLAAGTESARSGRRVALG
>NZ_CP047135.1|WP_159497914.1|3631934_3632312_-|BON-domain-containing-protein
MTNTTRNLLAASLALGMVLGTSSAMAKDPPKTTDHAAMTHADKHDSAEPVTDSWITTKVKTDLLTSKNVPGTEVKVETVNGVVTLTGTVASQAEHDKALRVTKGIKGVKSVDASGLKVAAAAAKR
>NZ_CP047135.1|WP_159497913.1|3629467_3631285_-|PAS-domain-S-box-protein
MALAFSDEIWDRWRLPALALAAAAIIVVPWVTLRQLSDDNVEAMRWVTHTQDVGVVVYQLQADVRDVESAALTMSKGIDAPGLRERLGKAKEIPQRLQRLAELTRDNPEQLVRIGRIQSMVERRMEVARQLAKTSPNADQRELVQDLTTRYPIRGLIEELQASEEKLLAQRTATFQKQQRRGEFVSWTALAIQLALLGLVLWLLYRQAGHRAAAERASLRSTARAASVLHTVREPIVLLDRDLKVQLHNPAFAELYGLDEDSGEVRSLDSIGDGAWTDAVVRQRLTDVLLRGRELWDYEHEQRTADDQVRTMLINARRMPLPDKDDEVVLMTVSDVTVQRAVQQRVEELNRQLEGKVEQVSEVNRELEAFSYSVSHDLRAPLRHIGGFSDKLARHLGDDADEKSLHYLGVISNSARRMAALIDDLLVYSRLGRAAMRMQAVDMQSLVADTRAMLDANLQTEAEETGVPRHVEWKIAPLPILVSDENMMRQVWLNLLGNAIKYSSNRDPARIEVEYQQQPDGGHLFTVRDNGAGFDMAYAAKLFGVFQRLHKASEYPGTGIGLASVRRVLTRHGGRIWAESAVDQGASFHFLLPPALDAINKGSAA
>NZ_CP047135.1|WP_038686203.1|3643101_3644316_-|D-alanyl-D-alanine-carboxypeptidase
MKFRFAAAAMATTLLVGVVSAQTPQPAPQPTPAPAAAPITVATPPAPKPSVSKAWVLMDYATGQVLAGENEHEQLAPASITKVMTSYVVAAEVKNGKVRPDDQVMMSERAWREGGAGTDGSYSGFPVNQTARLEDMEKGMAIQSGNDAAIALAEHVAGSEEAFASLMNSYAAKIGMKNSHFVNAHGLTAPGHHSTAFDLALLGRAMVRDYPETYAYNKVKEFTVGTIKQPNRNLLLWRDGSVDGIKTGHTSEAGYCLMSSAQRGDQRLIAVVLGGSSEKQRADDSLALLNWGFRFFETHRMYEPGKAVAEHKVWKGKTDTVQLGVAQPLLVSVPRGRYNDLKPTIDVPKTLEAPFTAGQQIGSLKVTLDGKVVAEAPLVAVAAVEEAGFFKRLWDSFWMWWESE
>NZ_CP047135.1|WP_159497921.1|3644421_3645648_-|septal-ring-lytic-transglycosylase-RlpA-family-protein
MNARARCRWLVPGLLILALAACSSAPKKPASAVTAKPGGTLVQGKGKGGRPAHCPDGSPYKAATEDPSTRGDYRAGGLYKPGVNDSTPTYVPNVACIPEPDVVDLPRSPVGNKSPYVVLGKQYQVLDKTSGYAEKGTASYYGAKFHGRLTSNREVYDMYAFTAAHKTLPLPSFARVTNLDNGESVIVRVNDRGPFHDGRVVDLSYAAAVRLGITQRGTGNVEVRALSPGDDNLLADKPSRRERRAVAAASVASAAPARTPSDMDKLVGRLPSPPSPSAGRPAATQAAQIDDAPVTVSALPAAPVAVAAAARPAPRPAPAAAPVPASTLQQQVGNVFLQVASFASRDNATRALGQLSSAGIVGASISDIVSGGRTLWRLRVPAADHASASELAGRIVGLGFGSPQIVKD
>NZ_CP047135.1|WP_159497922.1|3645644_3646790_-|lytic-murein-transglycosylase-B
MIRRTLACMLTLGLVACATQPPSPSPSPQASGAPNKPVPGQKGPAEAAPEAAAATAAPVDLTPVPFEVARANFVRDTAQRYGIPAAQIEATLAQAQIRDPIIAAMSRPAERVKPWNEYRPMFISQSRIDGGRKFLAEHRDELTRVQQRTGVPAEVIVAIIGVETSYGRNTGSYRVLDALYTLAFKYPRSGDPAKLEREVRRELYFRDELARLFALTRDEKLDITAIKGSYAGAMGMGQFMPSSYQDFAVDGNGDGRRDLFNSYDDVFSSIANYFVKKGGWVRGGPVAVPATLAAGREEFNPTDWAPTWTLSALAQRGYQPSVSVPAGLTATPITLEGSAGKQYWLGFQNYYAITRYNLSKMYAMAVFQLSQAIAGQELPPA
>NZ_CP047135.1|WP_159497923.1|3647547_3648678_-|rod-shape-determining-protein-RodA
MVEHLQRVRAAFHFFLHSLDLPLLVALCLLMLASLAVLHSVEGPVQAQAMRFAAGLAAMWGLSRLPVLQLRAWSPWIYAVSLLPLLAVYVVGTGKYGQRWLNLGAFYLQPSELLKLSLPMMMAWYLHRQTLPPRPKVVLVAALLIGVPAVLILLQPNLGTATLVTASGMFALLLAGLHWGWVALALGGVSVAAPLAWFGLLRQYQKDRVLTFLYPENDPLGTGWNIIQSRIAIGSGGMHGKGWGQGTQAALDFLPEYTTDFAFSVLAEEFGWVGVLAVLGLFPFVIARCLWIAAGTRCGYARLLAGTTGLVFFVYVLVNGGMISGLLPVVGVPMPLISYGGTSAVSLLAGFGLVMAVQGRKPIHGRQRHGPLTAGT
>NZ_CP047135.1|WP_159497924.1|3648882_3649995_-|rod-shape-determining-protein-RodA
MKVFLRWATDMVVRFSSSLDWVLCLALGALMLIGLAVLKSAGGDGLVFAQGARFVVGLGAMWAISRASILRIRSATPLIYAISMIPLLAVFVLGTGKYGRQWLDLKLFYLQPAELLKVSLPMMVAWYLHKMPLPPRFSTVMVSAVIIGVPTGLVMLQPDFGTGVLIAASGAFVLLLGGLPWWWVGVAVGGVAAAAPVAWIWLLRPYQKDRIMMFLDPEMDALGAGWNIIQSKIAIGSGGFDGKGWGQGSQSHLNFIPEQTTDFAFSVLSEEFGWIGVATVLVLYLVVIGRCLWIASQSRDSYSRLLAGATGLAFFVYVLVNGGMISGLLPVVGVPMPLISYGGTSAVSLLAGFGLVMAARSHQPVHGGYG
>NZ_CP047135.1|WP_159497925.1|3649991_3652055_-|penicillin-binding-protein-2
MYVRRQAKNPHAEGEQFRRRAALGFLGVLVCLLGLGGWYFKLQVLDHDIYATRSEANRIKPRPVVPGRGMIYDRNGRLLAENVPAFRLDITPDKVKDMDATLAGLAKILALSPEDIETFNKSRKARRKFLPVTLKLRVTDEEMARFAVDRWRYPGVELEPYLTRRYPYGDLFAHIIGYVGRVDDKDLEVLGEGNAALTHIGKSGLERYYESQLRGKVGYEQVETNVQGRAIRTIGRVAAQSGSDLRLSIDADLQRAMVAAFGEFEGAAVAMDPRTGEVLAMVSLPSYDPNLFVNGISHADFQALNSNPSRPQFNRLVLGGVAPGSTIKPLIGLAGLDSGTRKPEDKILSTGMFYLPGTSRGWGDANRGGHGWTDLRKSITQSVNTYYYKLALDMGIERFDQYMGYYGFGAPTGIDLTGEIGGILPSPQHKYKTRKERWYPGDTVNVSIGQGDWKVTPLQLVHGVSGIGNGQLRTPHLVMQQRAGFDADWTAMPAGETKPVSPSPGNLQAVREGMMGTMRPGGSGARAAAGAPYTIAGKTGTAQVISRRGTAAVNPKSLPMHLRHRSLFVGFAPAENPVIAVAIAVEGGGYGGSAAAPIARKLFDAWLLGKMPDGLEPLDSERGTTAIGITGFESSDNSARAAGDAAAAALESLPVQVGLPVAPVPSPVPGTPVPAATAPPTAPERSR
>NZ_CP047135.1|WP_128097599.1|3652056_3652542_-|rod-shape-determining-protein-MreD
MSRLRDKPWVLPLSVVLALLLGLLPLPALLQPLRPYWLALVLAYWVIEAPDRVGLGIAFASGVVADLLYGGVLGEQALRLVMLTFILQRFRARIRFFPMSQQMLAIGGLLFNDRIVSSVVHIVVGEPTLPWSYWWAPLLGMGLWPLLFILLDAVRFGRRGR
>NZ_CP047135.1|WP_159497926.1|3652538_3653735_-|rod-shape-determining-protein-MreC
MPPYAGPPVASRQGDAASPLRLLAYLALAITLIVLDDQAGWLARLRAQANVLVQPVWALAGLPGKLGTQVKDNAASHGQLVEENRALRNKLLIANARLTRLQTAALDNAQLRELLNVAERSGLDVQLAPILDIDLDPVRQRLVLAAGSRDGVHLGQAVIDAGGLMGQVIATTGSNATVLLLTDPDHAVPVTVARNGVRLIVYGRGDTLELRDIPLSAGVEVGDEIVTSGLGGRFPAGFPVGKITALRPDDTHAFLVGELKPAAQLDRGRDVLLLRPGAAIRVPATHELPQPDPSETNQAAGGASPLNPAPSARPLEQQGGSAPADAAVVPGSARQPQPVVPGSARQPQPVVPGSARQPQPVVPGSARQPQPVVPGSARQPQPVAPGSARQAPPVENRE
>NZ_CP047135.1|WP_038686189.1|3653864_3654911_-|rod-shape-determining-protein
MFKKLRGMFSNDLSIDLGTANTLIYVRGQGIVLNEPSVVAVRQDRAIGGTRSVAAVGAEAKQMLGRTPGHITTIRPMKDGVIADFTYTEAMLKHFIKKVHKSRFLRPSPRVLVCVPAGSTQVERRAIKESAEEAGARDVFLIEEPMAAAIGAGMPVTEARGSMVIDIGGGTTEVAVISLNGIVYSASVRIGGDRFDESITNYVRRNHGMLIGEATAERIKVELGCAYPQAEVIEMEISGRNLAEGVPKMIKINSNEVLEALHEPLSGIVSAVKLALEQTPPELCADVAERGIVLTGGGALLRDLDRLISEETGLHVQVADDPLTCVARGGGRALELVDMHGNEFFAPE
>NZ_CP047135.1|WP_159497927.1|3655196_3656135_+|carbohydrate-kinase-family-protein
MSALICGSLAFDTIMVFPDQFKNHILPDKVHILNVSFLVPRMRREFGGCAGNIAYNLHLLGGDPIPMGTVGSDFGPYREYFQGLGIDLARVKVIDELFTPQAFITTDHDNNQITAFHPGAMMRSYENHVKDVPGVTLGLVGPDGREGMIQNSQEFFEGGVPFIFDPGQAMPLFNGPELRTFIEQADYVVVNDYESNLLQERTGWDEKAIVSRVKAYITTRGPKGAVIHTPEKTYDIPPAHERRVVDPTGCGDAFRAGLIYGIEKGFDWLTIGRMGNLMGALKVEHPGTQNQRFTFEEFNEQFKQQFGYALNV

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Crispr_ID: NZ_CP047135_12

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP047135_12

3931674-3931764

Orphan

Consensus_repeat	Method
CCCAGCCGGGCAGAGCCCGGCTCTACGA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP047135_12

>merge|NZ_CP047135|12|3931674-3931764|CRISPRCasFinder
CCCAGCCGGGCAGAGCCCGGCTCTACGAAGAGCGCGATTCCCGGGCCAGAGACATCGCGTTGGCCCAGCCGGGCAGAGCCCGGCTCTACGA

>NZ_CP047135|12|12|3931674-3931764|CRISPRCasFinder
CCCAGCCGGGCAGAGCCCGGCTCTACGA	AGAGCGCGATTCCCGGGCCAGAGACATCGCGTTGG
CCCAGCCGGGCAGAGCCCGGCTCTACGA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP047135.1\|WP_159498119.1\|3927156_3928014_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|235132
NZ_CP047135.1\|WP_159498122.1\|3931845_3935544_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP047135.1\|WP_159498114.1\|3919042_3920377_-\|serine/threonine-protein-phosphatase	unknown	unknown	gnl\|CDD\|350376
NZ_CP047135.1\|WP_159498115.1\|3920373_3922128_-\|alpha/beta-fold-hydrolase	unknown	unknown	gnl\|CDD\|371922
NZ_CP047135.1\|WP_159498117.1\|3922848_3925377_-\|tetratricopeptide-repeat-protein	unknown	unknown	gnl\|CDD\|274350
NZ_CP047135.1\|WP_128097100.1\|3951514_3952357_-\|response-regulator	unknown	unknown	gnl\|CDD\|381085
NZ_CP047135.1\|WP_038685839.1\|3930475_3931351_-\|RNA-polymerase-sigma-factor-RpoH	unknown	unknown	gnl\|CDD\|235838
NZ_CP047135.1\|WP_159498113.1\|3918620_3919046_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP047135.1\|WP_159498116.1\|3922166_3922772_-\|CDP-alcohol-phosphatidyltransferase-family-protein	unknown	unknown	gnl\|CDD\|223632
NZ_CP047135.1\|WP_159498118.1\|3925555_3927139_+\|bifunctional-phosphoribosylaminoimidazolecarboxamide-formyltransferase/IMP-cyclohydrolase	unknown	unknown	gnl\|CDD\|234854
NZ_CP047135.1\|WP_159498128.1\|3954217_3955942_-\|ATP-dependent-RNA-helicase-RhlB	unknown	unknown	gnl\|CDD\|235307
NZ_CP047135.1\|WP_159498126.1\|3950810_3951518_-\|uracil-DNA-glycosylase	unknown	unknown	gnl\|CDD\|235376
NZ_CP047135.1\|WP_159498125.1\|3950414_3950780_+\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|238045
NZ_CP047135.1\|WP_159498124.1\|3947940_3950097_-\|DUF11-domain-containing-protein	unknown	unknown	gnl\|CDD\|227002
NZ_CP047135.1\|WP_038685830.1\|3956510_3956840_+\|thioredoxin-TrxA	unknown	unknown	gnl\|CDD\|200072
NZ_CP047135.1\|WP_159498121.1\|3928996_3930280_+\|phosphoribosylamine--glycine-ligase	unknown	unknown	gnl\|CDD\|234856
NZ_CP047135.1\|WP_159498120.1\|3928013_3928916_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP047135.1\|WP_159498123.1\|3935546_3947861_-\|DUF11-domain-containing-protein	unknown	unknown	gnl\|CDD\|380078
NZ_CP047135.1\|WP_038685832.1\|3953311_3953998_-\|cell-division-ATP-binding-protein-FtsE	unknown	unknown	gnl\|CDD\|225438
NZ_CP047135.1\|WP_159498127.1\|3952364_3953315_-\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|225088

Protein	Function_ID	Function_description	E-value
NZ_CP047135.1\|WP_159498119.1\|3927156_3928014_+\|hypothetical-protein	gnl\|CDD\|235132	PRK03577, PRK03577, acid shock protein.	0.00392374
NZ_CP047135.1\|WP_159498114.1\|3919042_3920377_-\|serine/threonine-protein-phosphatase	gnl\|CDD\|350376	cd14527, DSP_bac, unknown subfamily of bacterial and plant dual specificity protein phosphatases. This subfamily is composed of uncharacterized bacterial and plant dual-specificity protein phosphatases. DUSPs function as a protein-serine/threonine phosphatases (EC 3.1.3.16) and a protein-tyrosine-phosphatases (EC 3.1.3.48).	7.05892e-35
NZ_CP047135.1\|WP_159498115.1\|3920373_3922128_-\|alpha/beta-fold-hydrolase	gnl\|CDD\|371922	pfam12147, Methyltransf_20, Putative methyltransferase. This domain is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with pfam00561. The family shows homology to methyltransferases.	5.17827e-179
NZ_CP047135.1\|WP_159498117.1\|3922848_3925377_-\|tetratricopeptide-repeat-protein	gnl\|CDD\|274350	TIGR02917, TPR_domain_protein, putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.	5.3168e-28
NZ_CP047135.1\|WP_128097100.1\|3951514_3952357_-\|response-regulator	gnl\|CDD\|381085	cd00156, REC, phosphoacceptor receiver (REC) domain of response regulators (RRs) and pseudo response regulators (PRRs). Two-component systems (TCSs) involving a sensor and a response regulator are used by bacteria to adapt to changing environments. Processes regulated by two-component systems in bacteria include sporulation, pathogenicity, virulence, chemotaxis, and membrane transport. Response regulators (RRs) share the common phosphoacceptor REC domain and different effector/output domains such as DNA, RNA, ligand-binding, protein-binding, or enzymatic domains. Response regulators regulate transcription, post-transcription or post-translation, or have functions such as methylesterases, adenylate or diguanylate cyclase, c-di-GMP-specific phosphodiesterases, histidine kinases, serine/threonine protein kinases, and protein phosphatases, depending on their output domains. The function of some output domains are still unknown. TCSs are found in all three domains of life - bacteria, archaea, and eukaryotes, however, the presence and abundance of particular RRs vary between the lineages. Archaea encode very few RRs with DNA-binding output domains; most are stand-alone REC domains. Among eukaryotes, TCSs are found primarily in protozoa, fungi, algae, and green plants. REC domains function as phosphorylation-mediated switches within RRs, but some also transfer phosphoryl groups in multistep phosphorelays.	2.98676e-17
NZ_CP047135.1\|WP_038685839.1\|3930475_3931351_-\|RNA-polymerase-sigma-factor-RpoH	gnl\|CDD\|235838	PRK06596, PRK06596, RNA polymerase factor sigma-32; Reviewed.	4.83428e-174
NZ_CP047135.1\|WP_159498116.1\|3922166_3922772_-\|CDP-alcohol-phosphatidyltransferase-family-protein	gnl\|CDD\|223632	COG0558, PgsA, Phosphatidylglycerophosphate synthase [Lipid metabolism].	2.85749e-19
NZ_CP047135.1\|WP_159498118.1\|3925555_3927139_+\|bifunctional-phosphoribosylaminoimidazolecarboxamide-formyltransferase/IMP-cyclohydrolase	gnl\|CDD\|234854	PRK00881, purH, bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; Provisional.	0
NZ_CP047135.1\|WP_159498128.1\|3954217_3955942_-\|ATP-dependent-RNA-helicase-RhlB	gnl\|CDD\|235307	PRK04537, PRK04537, ATP-dependent RNA helicase RhlB; Provisional.	0
NZ_CP047135.1\|WP_159498126.1\|3950810_3951518_-\|uracil-DNA-glycosylase	gnl\|CDD\|235376	PRK05254, PRK05254, uracil-DNA glycosylase; Provisional.	2.05988e-149
NZ_CP047135.1\|WP_159498125.1\|3950414_3950780_+\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|238045	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators.	7.58205e-12
NZ_CP047135.1\|WP_159498124.1\|3947940_3950097_-\|DUF11-domain-containing-protein	gnl\|CDD\|227002	COG4655, COG4655, Predicted membrane protein [Function unknown].	6.92382e-15
NZ_CP047135.1\|WP_038685830.1\|3956510_3956840_+\|thioredoxin-TrxA	gnl\|CDD\|200072	TIGR01068, Thioredoxin-like_protein_slr0233, thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model. Any protein that hits once with a score greater than the second (per domain) trusted cutoff may be taken as thioredoxin. [Energy metabolism, Electron transport].	3.84803e-46
NZ_CP047135.1\|WP_159498121.1\|3928996_3930280_+\|phosphoribosylamine--glycine-ligase	gnl\|CDD\|234856	PRK00885, PRK00885, phosphoribosylamine--glycine ligase; Provisional.	0
NZ_CP047135.1\|WP_038685832.1\|3953311_3953998_-\|cell-division-ATP-binding-protein-FtsE	gnl\|CDD\|225438	COG2884, FtsE, Predicted ATPase involved in cell division [Cell division and chromosome partitioning].	6.18841e-113
NZ_CP047135.1\|WP_159498123.1\|3935546_3947861_-\|DUF11-domain-containing-protein	gnl\|CDD\|380078	pfam17963, Big_9, Bacterial Ig domain. This entry represents a wide variety of bacterial Ig domains.	1.78537e-07
NZ_CP047135.1\|WP_159498127.1\|3952364_3953315_-\|ABC-transporter-permease	gnl\|CDD\|225088	COG2177, FtsX, Cell division protein [Cell division and chromosome partitioning].	3.77314e-74

>NZ_CP047135.1|WP_038685839.1|3930475_3931351_-|RNA-polymerase-sigma-factor-RpoH
MSQNTSTALVANNLPIPSALGSLDAYIGAVHQIPVLSVDDEQDLARRFRDELDLDAARELVHSHLRFVVHVARGYNGYGLALGDLIQEGNIGLMKAVKRFDPDMGVRLVSFAVHWIRAEMHEFILKNWRIVKVATTKAQRKLFFNLRKSKTRLGWMNAAEVRAVAKDLNVSEREVLEMESRLSGRDIGFDAPSDEDNENAPPSPAAYLVADAEDPSMAYERADSEDNKLQLLREGMAELDARSRDIIRRRWLDADSKVTLQELADEYGVSAERIRQVEANALKKMKALFTA
>NZ_CP047135.1|WP_159498121.1|3928996_3930280_+|phosphoribosylamine--glycine-ligase
MKILVIGAGGREHALAWKLAQSATVEEVIVAPGNAGTATEPKCRNVPVKVTDLDGLLALVAAEGIGLTVVGPEVPLVAGVVDRFRAAGHRIFGPTAAAAQLEGSKAYAKDFLARHNIPTAFYAVHTEIEPALAYIREKGAPIVVKADGLAAGKGVIVAMTLDEAEDAVRDMLSGNAFGDAGARVVIEEFLDGEEASFISMVDGTTALPMATSQDHKRVGDGDTGPNTGGMGAYSPAPVVTDDVHARVMREVVNPTVQGMIADGIPFTGFLYAGLMIDANGAPKVIEFNVRFGDPETQPVMLRLQSDLVELVQAAIDARLHEVDAQWDPRPSLGVVMAAAPYPETPISGDVIHGLDTVPPTAKVFHAGTSLDAQGQVVSAGGRVLCVAALGDSVSDAQANAYAGVAKVTWDNEFHRTDIGWRAIARER
>NZ_CP047135.1|WP_159498120.1|3928013_3928916_+|hypothetical-protein
MGCAARAVHRLRPFALAAALLGLLAGCGDATPSSNAGKPRRVLDSTVQVEDTLEVSGTADQRLLGFLQARYGDNARLDAPWQDQWDDTEVEALRPVTRSVCARDTRDTDGQVQTLLAVCQTLDDAASVEPGRLDLYVLRDGPSVGTTEAPLLVIAQRLQGQYGHRGAPGTVQVEPLGPHRHAFRITHGQIQRGVTLASRTYVAVHANRLREVAVLREHIDNSAARPCGDAGKGCDDTPFNVDFSIAVGTADAVDGYWPLTVRSRGQDCAGPAHSYDLVAFEAGARRYAVPAELQRAGCAE
>NZ_CP047135.1|WP_159498119.1|3927156_3928014_+|hypothetical-protein
MSPQPMKTLAALAIASAAALAGCTPASEPAAPAAPVAAQTPAAPVAHVSRTARLQAFLTERYGKAAKLDGQWRGSWSQDGDTRPTDWRVCAEQPVVTGDSWQQLLAVCGWPLDGAHPDPGAIDFFVLRPEGDRFAVAAELTGQNFGSQGQPGTVQIIRAGSDFYGFRIEHGWFGQGYSLITQTLVLPGPNGLVEAGGVRSHIDNSGAYDCDAADAEPDCRTRLFDLDFSLTFDSRDPAARQWPLVIEETGLGCGAAQVRREHRFTLDAKTWTYAFPDALNREGCE
>NZ_CP047135.1|WP_159498118.1|3925555_3927139_+|bifunctional-phosphoribosylaminoimidazolecarboxamide-formyltransferase/IMP-cyclohydrolase
MTADLLPVRRALLSVSDKTGLIDLARALAARNVELLSTGGTAKAIRDAGLAVKDVSDVTGFPEMMDGRVKTLHPMVHGGLLGRAGLDDAVMAEHGIGAIDLLVLNLYPFESVTAKADCTLDDAVENIDIGGPAMLRSAAKNFARVAVATDPSQYAELLAELDANDGQLSAAKRFAFSVAAFNRVAQYDAAISNYLSAVAASDAVVPVRSEFPAQMNSSFVKVMDLRYGENPHQSGAFYRDLYPVPGTLATFQQLQGKELSYNNLADADAAWECVRQFDAPACVIVKHANPCGVAVGAGNGDAYELAYATDPTSAFGGIIAFNQPLDAATAKVILDRQFVEVLIAPDYEPAALEYAQKKANVRVLRIPHGQGRNNYDTKRVGSGLLIQSADNRGMARDELTVVSTLAPTDTQFADLLFAWKVAKFVKSNAIVYAKDNRTIGVGAGQMSRVYSARIAGIKAADANLVVEGSVMASDAFFPFRDGIDAAAAAGIKAVIQPGGSMRDNEVIAAADEHGLAMVFTGVRHFRH
>NZ_CP047135.1|WP_159498117.1|3922848_3925377_-|tetratricopeptide-repeat-protein
MSTATWKGPLLASLVVFAGTGTAVQAQETARGAADAAVQVVEIAAVPVAVDAAHGANAPADADGSSSDDLEQRAYRAYEDQDWPQASRLIAQAIALAPDQAGLYRLKAYIAAATGDDAGVLVAAEQALQRDPGDAESLQLRGSARARAGDAQGALADYAAALQAGWHTSGFFRNYLYVLNQQQANARMLEVHAAYEDAYRRDPEGTGLHPDIPFHAAQAYQHLGQPRRALDLLDQAIAQSPQVAGYYGNRALAQHALGRSSQSLADDARAMQLDPTEPLYPYNRGVTRLDLGDAAGALQDFKAALALGKDDADTWLNIGVVEERLGRTREALAAYDRALAKAPGNAKALTNRLSLLGKAGKGDAAAVAAQAASLPTENQAQLLFNQGQAQTRAGQWQAAADLFAQAVRLDPGLDTAWLNLGVAQARLGQHQRALDTFNDYIQRAPLKTLGLLNRANVLHELGDHGAAEQDLLRAAQLEPGNLDIQQRLATHYSRTGQTDKARRYYAQLVTLPGNVSPDAFINYAAMLLQLGDSREAAVVAANGVARFPDDYGLRVNLGNALGDSGQHPQAVEAYRVAMRLQPARLDAHYNLGNLYLQQLKQPRKAVQEYRTALTLQGDPALDASGQREQRMDIHLNLASALADTGDANAAGRALQDAIDDAPDDYRPWFNRAAMALSAGNPAAATPDFEAAWLRLDALQRAQAQPDPALQEHAGYVLFHLGRTGEAAIRMQQVLQAQPDNIDAQRNYGYMLLDLGRPQDAKRLFDQAFTRAPDEVDGWLGLLACAMLDSDRVQLGRLKRQFDQRFDRRYVLTAGLPVQLMRSEGYWYSDRFLQLWRQLLVAE
>NZ_CP047135.1|WP_159498116.1|3922166_3922772_-|CDP-alcohol-phosphatidyltransferase-family-protein
MSIYALKGRFQDLLRPGVRGLYRVGITANTVTVLAAVVSLLVAAAVWRWAPARPLLYLTLPLWMLLRMALNAVDGMLAREFGQQSRLGAYLNELCDIIADAALYLSLLSLPGVNPTALWALTWIAAVCEYAGVLGVMVGASRRYDGPMGKSDRAFVIGLIGVLLAPGWIDGAIVGWIAWAAAALCVLTGWRRVRQGLAEIG
>NZ_CP047135.1|WP_159498115.1|3920373_3922128_-|alpha/beta-fold-hydrolase
MRAQQHLQFHSFDGQPLFYRHWSASGLAPTRRAVVLLHRGHEHSGRVAHLADELDLPDTDVFAWDARGNGQSPGERGDAPGFEALVRDLDSFIAHIGQQHGIAVQDIAIIAQSVGAVVAATWVHDYAPPLRALVLASPAFKVKLYVPLAVPGLKLMQKLRGNFFVNSYVKPQWLTHDPERVESYRTDPLITRPISVRVLLGLYEAADRVVGDAQAITVPTQVLVSGSDFVVHRAPQDRFYERLSSPIKERHLLPGFFHDTLGERDRAPAIAAIRRFVTERFAQPLVRPSLRDAHRHGPTFDEAEVLSWPPQRNSAKDLYWRFTRAGLRFGGTLSEGIALGLESGFDSGSTLDYIYRDQARGSGPLGRMIDRNYLDAIGWRGIRIRRTHVRELLQLAALHLHGQARPVRVLDVAAGHGRYVLDALAQGEQRADAITLRDFSERNVIDGRRLISEFGADDIATFEQGDAFDAASLAALPVAPTLSTVSGLYELFADNDAVLRSLQGIAAAMREGGYLVYTGQPWHPQLEFIARALTSHREGAAWVMRRRTQQEMDELVRLAGFEKVTQRIDRFGIFTVSLARRVLP
>NZ_CP047135.1|WP_159498114.1|3919042_3920377_-|serine/threonine-protein-phosphatase
MTEGVRPWRRALLWLALLGPFFFLSYGLANAMAGRLSYVPSIVFDWEAAIPFQPWTIVPYWSIDLFYVASFFICTQRAELDMHARRLLTAQLLSVACFLLWPLRFSLERPETAGVFGWLFDVLLGFDKPFNQAPSLHIVLLVVLWVRFQQHLRGWWRAALHVWFALIGISVLTTWQHHFVDVPTGVAVGWLCVWLWPAHGRSPLAHWQWAQDGTRWRLAMLYGLGSALCASLALTFSGWVLWLGWPAVSLALVALGYAAVGTAVFQKQEDGRLSMAACWLLAPYLLAAWLNSRWWTRRAPQPQLVIDGVWLGRMPAAGASLPMSTVVDVCAELPFAGQVRHYRSVPMLDLATPTAHDLQRAADAIAHGHRRGEVLVCCALGYSRSAAAVATWLCRSGHADSADAAIRLLQLDCPHIVLHDRHRDAIEQAVRDAAAANGSTQVSA
>NZ_CP047135.1|WP_159498113.1|3918620_3919046_-|hypothetical-protein
MSMLFQLRVMTAVLRQARMATGISVLLAGAALALLCLSMPPVVVAVPALVSLLAGAVQAYYAARVSFDAALLEALQASHPDAAPGVIDDVLQKLGLREASTAPRGWQPRWQGMRRLLSWQLLALGAQALCLLGALVVKALP
>NZ_CP047135.1|WP_159498122.1|3931845_3935544_-|hypothetical-protein
MDITLSRPSTWTAILLRRASLALGTSLLLTAVPAIAQTALPSTAPDAIRCQDDSCRSDDGLLLRIGDDDAAVLPLPGRVDPRAATAVPLAPATTPDVAGPGGQFMAELPNGGVVWATEDPTMVPPSLSVQAAATVPFENGRVIRPLRFHSYNNYASFIQKLEVTLYRGTDTDLVTPLARIPLPTDYVGDAEWDGTLPEQIKLRTGDDLIYVARAYGAGGAFDETRIQRIQLVTRADFDRGLQVTRENVQKTLGQALDGDSAQDLQVSNSIYGQSTLRLQNIPIHGSRVRLYGRNLEPNSRVRINGQDFPVDLEQKFAAEFLEPVGQHRYDVSVEARDAPSAQRQLDVDVTGRYLFLVAIADVTLSRNSASGNVQPLAADDRDTDGFLSDGRLAFYLKGKMRGKYLVTAQADTQDRELKYLFRDFTQADAQDVFRRLDPDLYYPVYGDDSTTYRDVDTQGRLYLRVDWDQSQALWGNYATGITGTEYGQYVRSLYGGALNWRSLEATPLGEARSQLKVFGSEAQSAPGHSEFLGTGGSLYYLRHTDVLPGSEQVVLEVRDRTTGRTETRATLQEGVDYEIDDLQGRLILTRPLAQLTRENVRSITRDMPLDGYDQLLLVDYEYVPLGFSSDDVTYGARGRQWIGDHVAIGGTWIDENRSGENYSLKGADLTLQAGRGTYLKVEQTRTDATAAPVFYSDNGGLSFIRRNPYEGRRSGTASAVEARANLRELGWTAQDWSVGAWWRDVDAGFSVARQDTGQPIQEYGAEFLGYLTDDFSLYGRHTRTEQGELALEQSQLTAEWRLGNDGQLTGELRRVREEQALQDVSAMLAAIGYRQRFGSSWELYGTGQVTLDDDGGAYEKNDLLTLGARYLFGDRSSVGAEVSGGSRGNGAKVDAEYRMAPDHSLYGSYSYSTDRTGTDPLFDTGLQSGWTLGQRWRLSNQVNVYNESQYLKDRRQDSAGLVHTFGMDFYPAQGWNLGFTVMDGELDSTLGRIDRRAYSVSGGRTDAVAQWNSKLEYRRDSGAEQREQWVTTNRLLYKLNEDWRFALRANYADTDDRINPVADAKLVETNMGFAWRPHDATGWAGFGKFTYLYDVASLGQEGGNLYDQRSQVLSLEGIRQLGARWEVAAKLASRWGDYRTGRGEGAWLDSRADFAALQLRYRLFEKWEGLAEHRWLKVRDGGVRKGWLLGVDRRVGENFKVGVGYNFTEFSDDMTELKYDQKGFFLNMAGYY
>NZ_CP047135.1|WP_159498123.1|3935546_3947861_-|DUF11-domain-containing-protein
MAATRRQGRARRASAGIAHAVGLLALLLSPTLLAQSYPNPLNNTATVTAPADVGDPTPGNNTATDTNALALQAQLSVTKTLLSASPVAAGGAVQYRIQVSNAGPSAAQGVGVVDTVSALLTNVAWSCQPTTAASSCAQSSGTGNAINVQVNVGVGDSVVLLVNGTAPSATPATVPANSVTLVLPTGTTDPTPGDNSAITPAVPVQANALVANNDVFATAISSATGGTTPTVLANDTLNGAPVVGTSLIIALQNAPAGFTINSAGVITVPAGATAGATSLIYQICENASPTNCATATASVVIGPTAVNDSFNATGGAPSFAGNVGSNDNAPAGAVFSAVGTPPAGLTVNGDGTFAYAPAGGIAAPTSFQYQVCLPAPNGSVCATATAAIVVNANALVAVDDTFATPIPAGTGGLTPTVLTNDTFNGGAVPLGQVALSLVGAPTGFAINANGTVQVPATAAAGPLALTYRFCETALPANCATATATLLVSPDAVNDTVTTPGGGQPATGSLAGNDNIASGSTYTLATAPARGTAVVNADGTFGYTPSNANTGPDSFTYQVCLPDPNGSVCDTATVSVNVQANQIAAVNDVFITPLLPGATTAVSVLGNDTLNGVAVLPASVLLTLSGAPANYTVNANGQVQVPAGAAAGAVSFDYQICEIATPTNCATANVQLVVAPDAVDDTFVATAGIALTGTVAGNDNVGVGAQFSLLAVAAHGTVTVNADGTFNYTAQPAFTGPDSFRYQVCLPAPNAGVCDAATVTVNVGAAVIVAGNDDFTAAPLTSAGGLTASVLVNDTLNGAAILPAQATLSLINAPPAGYTLTANGQLQVPAGAPAGPISLTYQLCQAGTGNCATASIAVVIAPDAVADAFTTQVARAVSGNVAVNDSVAAGTTYAVTGATPAGLLFNPDGSFTYTPPPQYTGTTTFTYQACLAAPFAGVCDTATVTLNVNAGTLVASDDDFRGAIINPTSGGTTNSVLGNDTINGAVPPAPADVILSLVGAPAGYVINSNGTVSVPGGAAAGAVTFSYQLCEAALPSNCATAVVQLLLAPVAVNDTVSTQVGVPVTGNVAGNDDVPANASFSLSGTAPAGLVFNPNGTFTYTPPVGTQGAVIFAYQACLPAPDTTVCAGASVTVNVNAGTLVANDDDVRATPINPAVGGSTASVLGNDSLNGTVPPASADVLLTLVGAPSGYTLGSDGVLAVASGVPAGAVTLTYQLCEAALPGNCDTAQVRLLVAPLAAADVFSTPAGQLLAGNVGTNDNAPAGAVFRVPGAVPAGLQFGADGSLQYTPPANFTGPVAFTYEVCLPAPDSAQCSTATATINVNAGTLVARDDDISATPLAPGGTSASSVLVNDTLNGVTPPAAASVLLSLIGAPTGYALDANGLLQVPAAATSGAVVLTYQVCEAVLPSNCASATLRLVVTPSASNDTYSTAAGQALNGNVGDNDNVPAGALFSVVGPVPAGLTFTGSGSFTYVPPVGVTSPVTFDYQVCLPAPNAALCATASAAITLTVGSLAATGDDFSSTPISPVSGGSTTSVLANDSLNGITPPAVANVLLSLVGAPAGLAITAEGAVTVAAGTPAGVKNLTYQLCEAAAPGNCDTATIRLVVAPSALDDALSTASGQVLTSSVATNDNVPAGAVFQVVGTAPDGLVLASDGSLVYTPPVGFSGASTFAYTVCLPAPDAGVCATANATLNVNSGTLVAVADTFATPIAPGTASPTVLANDTLNAATPLPAEVVLSLVGAPTGFAIAADGTVSVATGTASGATTLTYQICEAAASANCATASVALIVAPAPANDAFAVQAGQTLSGTVSGNDNMPIGSVYALQGTPPAGVTFNADGSFTYAPPAGTTSPASFTYQACLPAPNSAVCGTATATLNINNGLLVAADDSFGAIAPGASTPSVLGNDALNGVTPPAAATVSLSLVGAPAGFTLNPTGTLSVAATAPTGAIVLVYQVCESAAANNCATANIALVVRPVPVNDVIAVQSGQPNTGNVSGNDNMPAGSTWSVAAPPQGLVFNSNGSFTYTPPAGTLGPVTFSYQACLPAPDAAVCGTATATLNIAVNAVEANDDAFAAPITGGSATPSVLTNDALNGVTPPASADVQLLLVGAPPGFVINNDGTVQVPAGAAAGATVLNYQLCEAASPTNCAAAAIRFVITPAPQNDAFAVQAGGTLAGVSVAANDGMPAGSSWTVQGTPPTGLQFNANGSFTYTPPVGTTGAVTFTYQTCLPAPNGGVCGLATATVNVNLGTLVAGDDSFVGIAPGAATPSVLANDALNAVSPPAAASVQLSLVGAPAGYAIAADGTITVPAGVTSGPATLTYQICETAAPSNCDTATVSLVIRPAAQNDAYAVQAGGSISNGNVAANDNLPAGSTWALQGATPAGLTFNADGTFTYTPPIGTPSPVVFTYQACLSAPNAALCSTATVTLNISNGSLVAVDDTLSGVAAGGTTSVSVLANDTLNAVSPPLPASVVLSLVGAPAGYTLNADGTLSVGSTVTSGTTTLTYQICEAAAPTNCDTASITVIVSPTPLNDAFSVQAGQTLSNSVATNDNLPAGSTFTVQGTAPAGLTFNLDGSFTYAPLPGTPSPVSFTYQACLPAPNALCATASVTLNIATGTLLAGNDTLSGVAPGTTSAASVLANDSLNGVSPPAATSVLLTLVGAPAGFAITPTGTITVATGVSAGPTTLTYQICEAAAPGNCATASVTVIVSPTPQNDAFSVQAGQTLSNSVATNDSMPAGSTWAVQGMPPPGLTFNPDGSFSYAPPAGAVSPVGFTYQTCLPAPNGSLCATATVALNINNGTLSAGDDTLVGVLPGATTGTSVLANDSLNGVSPPAAGDVLLSLVGAPGGFTLNPDGTLTVGSGVGAGPTTITYQICEAAAPSNCDTASVTVVVTPAPQDDAYAVQAGQTLSTTVAANDNTPPGAQFTLQDTAPAGLTFNANGSFTYTPAVGVVGPVSVAYQVCLPAPNATLCGRAIVTISINNGQLVAGDDTFTGVAPGSASGPSVLANDSLNGVSPPAAGDVLLSLVGAPAGFSIGTDGRISVSTGVTSGATALTYQICEAAAPANCDTASVTVVVSPAPQNDAYSVPVGQTLATTVASNDNMPAAAVYTVLGPAPAGLTLVSTGAFTYTPPGGTPSPVSFTYQACLPVPYAASCGTATVTININNGTLVAGDDVLTDVLPGATSSAGVLANDRLNGVSPPPPGDVILSLVGAPAGITINPDGTISVGTGVASGATQITYQVCEAAAPANCTTAGVTLVITPAPQNDSVTAPAGRPTLGNVSSNDNTPPGALYTLTSGAVAGLVFNADGSFSYTPPSGTTGPVIFTYQVCLPAPYSAQCGTASVTLTLSGSANVVLSVNDDFTSTPVDPSVGGTIARSVLDNDSFNNVSPPPVGSVVASLTGSTPGYTMNNQGQIMVAAGVQPGQVQLAYQLCENGVPTNCTTAIATVLVQGPVGALLAVDDSAGPIGPAGQARVVNVFTNDTFNTAPLDPAQVSFAPVATPALTFSADGWVDVAAGLAPGSYSTTYTLCLLNQPTVCDTGTVSVTVIAVPPGVDAEDDQVQVPQDGVIEIDVLGNDRVNGTPIDPDTVTVTITAPPPYGTATVMPRARIRFAALTNFAGVQGFDYQVCDVADPAMCASATVTVTVEPNVLTLVDDAVTMETTAPVQIDVLANDSARSAPLDPASLQVVTAPAHGSVQCANGLCSYTPAAGFAGTDSFRYRVCDVSIPTALCAEANVAVTVAGQQAVLRLTKVAAKRSAQIGDLVRYTVTIDNVGEVDANGATLLDTLPPGFTFVRGGFAVQDADNDARTSGVQPLRIDGIDIPVGDRATVVYYLRVGAGTGTGVHTNRITAIDGENRSIGNVASADVDITTDPLLDESLIIGSVFDDRNGNGVQDPGERGIPGVRVAAVEGLLMETDAFGRYHLVGIPGGQARGRNFILKVDPSTLPSGARFTTPNPLVRRITPGLPARFDFGVRMPDGALSAASPGDATAPRPVRIDLGEALFAPGSARLDASRDAVLDKAAQALVTRGGGRVLLTAAPGQEALARQRAQAVQMALATRVPAAIAAASHIAVVGGDGSTLYRLRLDDPSEPSPGADRTTREGR
>NZ_CP047135.1|WP_159498124.1|3947940_3950097_-|DUF11-domain-containing-protein
MVNVKGVNVPSVRWQSWLLLALLAVLSCLGQARAQSACTAGACVSAGPRLASVDSTQSPVLNLLFGALLPGTSLNLSVADWNNLAGANINLNALLTQLNGGVVVSDPSQVLNANITLGQLRAAMVQVLQADGQTAAANVLNALPLGVAGTTGNIRLADLLQIALPTGSLATVRLNVLDLLTGGVQLYNFRNVLTTPTPITVNTAALGLNGVTNVRLWLQVIEPPVYTCGTVGAAFHSAAIRIKLDLDLVQGLNTGTLSAALNGLNLLGVSLSNTSISADVLHLQLYADVARAEGSISAVNLVGNAVTLQARPGLVNLYVGQISDATFFNRSTVLTDTALTAATLTTLSVKVRVAANVLGVLTPIADITVPLTVSVRSFATATPGLQSASFTGPYPQTRTLTAGTVSAATMVSTLVNSLNIQVTSGNPTVTLLGGLPLPLPVADLVNGIVNTLLTPIRSAVNVLVTPVLTAVLGGLVDNLLALLGIRIGQAVFTVEGITQACAATLQLVKDLQPTSDTGRFNLSITYNGSTVGSASNVGNNGATAAVITVPGGSYALAEAAAAGTTLARYASSWQCTDQNNTVVSSGSGGSFTLQAPAMTATAVTLVCRITNRTRQAELSITKSDGSGTYTPGGTATYTLLVRNDGPDPVTNAVVADSLPNGITLRAAWTCSASTGSTCAAASGGAVGGNAVSVGVNLINGGQATISVPVSFSSNPGAY
>NZ_CP047135.1|WP_159498125.1|3950414_3950780_+|helix-turn-helix-domain-containing-protein
MQAMCDRIRRARLTAGLSQAQLAVEAGVRRSAVAQWEREGGTFPSVQHLARVAIVTQVHFEWLATGRGPGRPEDGVDLPLPDALPVEAARTAQETEILSLLRRMPARKRQVARAIMEMLTE
>NZ_CP047135.1|WP_159498126.1|3950810_3951518_-|uracil-DNA-glycosylase
MNDEATPSIQLEPSWKARIGEWLLRPDMRDLSSFLRQRKAAGAQVFPPGPQIFAAFDATPFDQVKVVILGQDPYHGPGQAHGLSFSVMPGVPVPPSLLNIYKEIEADLGIPRPDHGCLLPWARQGVLLLNAVLTVEAGQAGAHQKRGWEGFTDHVVDTLNRERDGLVFMLWGSYAQQKGKVIDTARHRVLKAPHPSPLSAHRGFLGCHHFSMANDYLQRRGQAPIDWSLPPRATL
>NZ_CP047135.1|WP_128097100.1|3951514_3952357_-|response-regulator
MRPQALKHLVDDAPRVMVVDGSKLVRKLIADVLQRELPAVEVVGCASIEEARNALEAGPVNLVTTSLTLSDGDGLALARLVRETAGQAYVPVIVVSGDAQQHLEQRRFTDYVTDYFDKALGHEALATFIRGYVQPETIPGATILYVEDSRVVAEATKRMLERQSLRVLHVMTAEEAFALLTAESLGRSSHRIDLVLTDVTLKGELSGLDVVERVRVDFGYGKRRLPVLVMTGDGNPLNQSGLLQAGANDLVQKPIEERLLVTKVLFQLRLSRLNEKPVVR
>NZ_CP047135.1|WP_159498127.1|3952364_3953315_-|ABC-transporter-permease
MNAPTNKEAAAPSRLGVWLHHHGHSVVFSLGRAWRKPWATLLTIMVMALALALPLGLSIALDNLTHFAGSVQQSRDINLFLKTDIDAAAAGQVADSLRGRADVANVTLQTPDQGLQELREGAGLGEAIDALHDNPLPTLLIVTPKAGADDARLAQSLEGLPQADLVQHDALWRKRLDAWLGFGARLVQVLSVLLGLGAALVVGNTVRLDIQARREEIGVLQLLGASDGFIRRPFLYLGAWYGLGAGAVALALIGVAGLALRPPLAALSESYASPFVLHGLDLLHSSFVLVGTVVLGWLGAWLVTGHFLRQTRPTET
>NZ_CP047135.1|WP_038685832.1|3953311_3953998_-|cell-division-ATP-binding-protein-FtsE
MSVLRFDNVSKQYAGGHQALVDVSFDVAPGEMLFVTGHSGAGKSTLLKLIHLDERPSRGAVIFNERNLLKVRGGNIPRHRREVGAVYQDHRLLMDRSIAENVALPLILRGTRRADIGKRVRSVLERMGLGHREKALPSQLSAGEQQRVGIARAIVSEPRLLVADEPTGNLDPTLAAEIMALFAELPERGTSVLVVSHDLALLRHMRKRVLILDHGKLIDDISPQDLAE
>NZ_CP047135.1|WP_159498128.1|3954217_3955942_-|ATP-dependent-RNA-helicase-RhlB
MSDKPLTDLTFSSFELHPALQAGLEGAGFTRCTPIQALTLPVALPGGDVAGQAQTGTGKTLAFLVAVVNRLLTRPALADRKPEDPRALILAPTRELAIQIHKDAVKFGSDLGLRFALVYGGVDYDKQREILQQGVDVIIATPGRLIDYVKQHKVVSLHACEICVLDEADRMFDLGFIKDIRFLLRRMPERTTRQTLLFSATLSHRVLELAYEHMNEPQKLVVESESITAARVRQRIYFPADEEKIPLLLGLLSRSEGARTMVFVNTKVFVERVARSLEKAGYRVGVLSGDVPQKKRESLLNRFQKGQLEILVATDVAARGLHIDGIKYVYNYDLPFDAEDYVHRIGRTARLGEEGDAISFACERYAMGLPDIEAYIEQKIPVEAVTSEILTSLPRPERAPAEAGEDGDENESVGQIFREAREARAAEEQRRGGGSSSGRGGKPSSGGRGERRAPGERSADGKPRRERKPRVEGEAPAEGEVKPQAAVAQAAVAVAAADAPSAAGSPAVEGERAPRKRRRRRHGRPVEGAEGAAQPVTPVQVTAKPMRAAAPAADPGASFLTRIGRKIRRMLSGS
>NZ_CP047135.1|WP_038685830.1|3956510_3956840_+|thioredoxin-TrxA
MSDKVVHVGDADFDSAVLNSKEPVLVDFWAEWCGPCKMIAPALDELADAYNGRAKIAKVNVDQNRALAAKYHVRSIPMLLVFKDGQVQAQQIGAVGKAQLAGMLDKALA

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Crispr_ID: NZ_CP047135_13

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP047135_13

4514362-4514456

Unclear

Consensus_repeat	Method
GCCGGGCAGAGCCCGGCGCTACG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP047135_13

>merge|NZ_CP047135|13|4514362-4514456|CRISPRCasFinder
GCCGGGCAGAGCCCGGCGCTACGGAATGTTCGGGTTGCCGGGCAGAGCCCGGCACTACGGAATGTTCGGGTTGCCGGGCAGAGCCCGGCACTACG

>NZ_CP047135|13|13|4514362-4514456|CRISPRCasFinder
GCCGGGCAGAGCCCGGCGCTACG	GAATGTTCGGGTTGCCGGGCAGAGCCCGGCACTACGGAATGTTCGGGTT
GCCGGGCAGAGCCCGGCACTACG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP047135.1\|WP_159498706.1\|4512498_4512789_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|236784
NZ_CP047135.1\|WP_159498700.1\|4508394_4509309_+\|tRNA-2-thiocytidine(32)-synthetase-TtcA	unknown	unknown	gnl\|CDD\|236737
NZ_CP047135.1\|WP_159499605.1\|4521321_4522350_+\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|235853
NZ_CP047135.1\|WP_038691382.1\|4523841_4524228_+\|BlaI/MecI/CopY-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|367747
NZ_CP047135.1\|WP_159498694.1\|4503051_4503879_+\|trypsin-like-serine-protease	unknown	unknown	gnl\|CDD\|238113
NZ_CP047135.1\|WP_159498720.1\|4526094_4526415_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|288556
NZ_CP047135.1\|WP_159498716.1\|4522461_4523640_-\|serine-hydrolase	unknown	unknown	gnl\|CDD\|365903
NZ_CP047135.1\|WP_159498718.1\|4524231_4526034_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|310280
NZ_CP047135.1\|WP_159498696.1\|4504121_4505099_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP047135.1\|WP_159498714.1\|4520740_4521082_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP047135.1\|WP_038691406.1\|4508094_4508298_-\|DUF465-domain-containing-protein	unknown	unknown	gnl\|CDD\|377305
NZ_CP047135.1\|WP_159498710.1\|4514497_4518952_-\|glutamate-synthase-large-subunit	unknown	unknown	gnl\|CDD\|236968
NZ_CP047135.1\|WP_159498698.1\|4505098_4507801_+\|glycerol-3-phosphate-1-O-acyltransferase-PlsB	unknown	unknown	gnl\|CDD\|235325
NZ_CP047135.1\|WP_128097633.1\|4509355_4510261_+\|recombination-associated-protein-RdgC	unknown	unknown	gnl\|CDD\|234726
NZ_CP047135.1\|WP_159498722.1\|4526493_4527609_-\|exonuclease	unknown	unknown	gnl\|CDD\|379215
NZ_CP047135.1\|WP_128097637.1\|4519129_4519531_-\|Elastase-inhibitor-AFLEI-Flags:-Precursor	unknown	unknown	gnl\|CDD\|288556
NZ_CP047135.1\|WP_159498702.1\|4510462_4511251_+\|DUF45-domain-containing-protein	unknown	unknown	gnl\|CDD\|307807
NZ_CP047135.1\|WP_159498712.1\|4519666_4520731_+\|DNA-topoisomerase-IB	unknown	unknown	gnl\|CDD\|226099
NZ_CP047135.1\|WP_159498704.1\|4511458_4512331_-\|methylglyoxal-synthase	unknown	unknown	gnl\|CDD\|238710
NZ_CP047135.1\|WP_159498708.1\|4512891_4514337_-\|FAD-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|273553

Protein	Function_ID	Function_description	E-value
NZ_CP047135.1\|WP_159498706.1\|4512498_4512789_+\|hypothetical-protein	gnl\|CDD\|236784	PRK10876, recB, exonuclease V subunit beta; Provisional.	0.00231742
NZ_CP047135.1\|WP_159498700.1\|4508394_4509309_+\|tRNA-2-thiocytidine(32)-synthetase-TtcA	gnl\|CDD\|236737	PRK10696, PRK10696, tRNA 2-thiocytidine biosynthesis protein TtcA; Provisional.	0
NZ_CP047135.1\|WP_159499605.1\|4521321_4522350_+\|SDR-family-oxidoreductase	gnl\|CDD\|235853	PRK06701, PRK06701, short chain dehydrogenase; Provisional.	9.09361e-164
NZ_CP047135.1\|WP_038691382.1\|4523841_4524228_+\|BlaI/MecI/CopY-family-transcriptional-regulator	gnl\|CDD\|367747	pfam03965, Penicillinase_R, Penicillinase repressor. The penicillinase repressor negatively regulates expression of the penicillinase gene. The N-terminal region of this protein is involved in operator recognition, while the C-terminal is responsible for dimerization of the protein.	8.9073e-28
NZ_CP047135.1\|WP_159498694.1\|4503051_4503879_+\|trypsin-like-serine-protease	gnl\|CDD\|238113	cd00190, Tryp_SPc, Trypsin-like serine protease; Many of these are synthesized as inactive precursor zymogens that are cleaved during limited proteolysis to generate their active forms. Alignment contains also inactive enzymes that have substitutions of the catalytic triad residues.	1.36728e-70
NZ_CP047135.1\|WP_159498720.1\|4526094_4526415_-\|hypothetical-protein	gnl\|CDD\|288556	pfam11720, Inhibitor_I78, Peptidase inhibitor I78 family. This family includes Aspergillus elastase inhibitor and belongs to MEROPS peptidase inhibitor family I78.	3.67977e-16
NZ_CP047135.1\|WP_159498718.1\|4524231_4526034_+\|hypothetical-protein	gnl\|CDD\|310280	pfam05569, Peptidase_M56, BlaR1 peptidase M56. Production of beta-Lactamase and penicillin-binding protein 2a (which mediate staphylococcal resistance to beta-lactam antibiotics) is regulated by a signal-transducing integral membrane protein and a transcriptional repressor. The signal transducer is a fusion protein with penicillin-binding and zinc metalloprotease domains. The signal for protein expression is transmitted by site-specific proteolytic cleavage of both the transducer, which auto-activates, and the repressor, which is inactivated, unblocking gene transcription. homologs to this peptidase domain, which corresponds to Merops family M56, are also found in a number of other bacterial genome sequences.	2.71615e-64
NZ_CP047135.1\|WP_159498716.1\|4522461_4523640_-\|serine-hydrolase	gnl\|CDD\|365903	pfam00144, Beta-lactamase, Beta-lactamase. This family appears to be distantly related to pfam00905 and PF00768 D-alanyl-D-alanine carboxypeptidase.	4.67596e-59
NZ_CP047135.1\|WP_038691406.1\|4508094_4508298_-\|DUF465-domain-containing-protein	gnl\|CDD\|377305	pfam04325, DUF465, Protein of unknown function (DUF465). Family members are found in small bacterial proteins, and also in the heavy chains of eukaryotic myosin and kinesin, C terminal of the motor domain (Myosin pfam00063, Kinesin pfam00225). Members of this family may form coiled coil structures.	6.98438e-09
NZ_CP047135.1\|WP_159498710.1\|4514497_4518952_-\|glutamate-synthase-large-subunit	gnl\|CDD\|236968	PRK11750, gltB, glutamate synthase subunit alpha; Provisional.	0
NZ_CP047135.1\|WP_159498698.1\|4505098_4507801_+\|glycerol-3-phosphate-1-O-acyltransferase-PlsB	gnl\|CDD\|235325	PRK04974, PRK04974, glycerol-3-phosphate 1-O-acyltransferase PlsB.	0
NZ_CP047135.1\|WP_128097633.1\|4509355_4510261_+\|recombination-associated-protein-RdgC	gnl\|CDD\|234726	PRK00321, rdgC, recombination associated protein; Reviewed.	2.79633e-134
NZ_CP047135.1\|WP_159498722.1\|4526493_4527609_-\|exonuclease	gnl\|CDD\|379215	pfam13482, RNase_H_2, RNase_H superfamily.	1.80013e-45
NZ_CP047135.1\|WP_128097637.1\|4519129_4519531_-\|Elastase-inhibitor-AFLEI-Flags:-Precursor	gnl\|CDD\|288556	pfam11720, Inhibitor_I78, Peptidase inhibitor I78 family. This family includes Aspergillus elastase inhibitor and belongs to MEROPS peptidase inhibitor family I78.	1.19324e-17
NZ_CP047135.1\|WP_159498702.1\|4510462_4511251_+\|DUF45-domain-containing-protein	gnl\|CDD\|307807	pfam01863, DUF45, Protein of unknown function DUF45. This protein has no known function. Members are found in some archaebacteria, as well as Helicobacter pylori. The proteins are 190-240 amino acids long, with the C-terminus being the most conserved region, containing three conserved histidines. This motif is similar to that found in Zinc proteases, suggesting that this family may also be proteases.	6.74049e-53
NZ_CP047135.1\|WP_159498712.1\|4519666_4520731_+\|DNA-topoisomerase-IB	gnl\|CDD\|226099	COG3569, COG3569, Topoisomerase IB [DNA replication, recombination, and repair].	1.61487e-104
NZ_CP047135.1\|WP_159498704.1\|4511458_4512331_-\|methylglyoxal-synthase	gnl\|CDD\|238710	cd01422, MGS, Methylglyoxal synthase catalyzes the enolization of dihydroxyacetone phosphate (DHAP) to produce methylglyoxal. The first part of the catalytic mechanism is believed to be similar to TIM (triosephosphate isomerase) in that both enzymes utilize DHAP to form an ene-diolate phosphate intermediate. In MGS, the second catalytic step is characterized by the elimination of phosphate and collapse of the enediolate to form methylglyoxal instead of reprotonation to form the isomer glyceraldehyde 3-phosphate, as in TIM. This is the first reaction in the methylglyoxal bypass of the Embden-Myerhoff glycolytic pathway and is believed to provide physiological benefits under non-ideal growth conditions in bacteria.	2.00099e-36
NZ_CP047135.1\|WP_159498708.1\|4512891_4514337_-\|FAD-dependent-oxidoreductase	gnl\|CDD\|273553	TIGR01318, glutamate_synthase_small_subunit_gltD, glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.	0

>NZ_CP047135.1|WP_159498708.1|4512891_4514337_-|FAD-dependent-oxidoreductase
MSRKQAFQFLDLPRTMPQRIPVELRTSGDWGELYGKFGKEDAQFQAGRCLDCGNPYCSWKCPVHNAIPQWLQLVQENRIHEAATLCHSTNPLPEVCGRVCPQDRLCEGSCTLEEFGAVTIGAVEKYIVDTALATGWRPDMTAVEPTGKRVAVIGAGPAGLACADKLAHAGIQAVVYDRYEQIGGLLQFGIPSFKLDKAVISRRRNVLEGMGVQFRLGVEIGRDVSVDQLLAEYDAVFVGTGAYRYTDGGLLGQDLKGVLPALPFLVQNSRIVGGSDAHGRPIAGWEDQIALPDLEGKRVVVLGGGDTGMDCVRSAVRLGAAKVTCAYRRDEANMPGSAREVANAREEGVRFLFNRQPLSIEAGADDEVIGVMVVETRLDEPDAQGRRNAVPVEGSESLLEADVVIIAFGFSPSTPAWLTERGVEAGHNGRIIAGGKDRLPFQTAHPRLFAGGDAVRGADLVVTAVAEGRDAAASIAQLLAV
>NZ_CP047135.1|WP_159498706.1|4512498_4512789_+|hypothetical-protein
MALSQVPKDMSVQSLAADRSARIRALGRLLRHAASGDADVLLVGLARMLDAHIDNDHADDASNGRIRDQLDEIELLLALEIERAGVRAAPVLSNAA
>NZ_CP047135.1|WP_159498704.1|4511458_4512331_-|methylglyoxal-synthase
MRIGLAANRLHHHDKHAALFRWLRACDGGLRELGVELHAVGRTFDAIQRLGFLPDFAPLKRYPNGREGGLMKLVAEVVGMGSPERTLDGAIYLMDPVDPSSIFPEATALKRQCVIHGKPFISTVATARDWVEVERLHAGLPADPGADDLYAFERQTLALIAHDAMKPAILAFADEHFDLLSRFAHRVGTGTTGQRLNELAWSRGWPQDQAWVQRYQSGPMGGDAQIADRVLEGDCQRAIFFEDPHVARQHEADIQLLERAVTTVTDQAVCITAPRVATRWAQAATARATG
>NZ_CP047135.1|WP_159498702.1|4510462_4511251_+|DUF45-domain-containing-protein
MSGFLRRLISPAAPTLQRDTVRLRLEDAEIDVLRVRDPRARRIKLSVDERGVRLTLPPRASLVMGERFLELHRDWLSTQLRSYQAQNLPPPLVIGEPGVLPLRGALLPLRWESGRFATMRIDSEGACLHWPARGTDATLRRTLREFYEAQTRADVGQWLPRYLPGLPRAPARLRLKVMSSQWGSLAPDGSMALDLALVLGRPSAFEYVLVHELCHLIQANHSPAFWAEVEQRFPAWRQERDYFQAEGRRLKAMLRQLLTPTP
>NZ_CP047135.1|WP_128097633.1|4509355_4510261_+|recombination-associated-protein-RdgC
MFFRNLTLFRFPTATDFSEVDTLLPQVLLKPVGPLEMNSRGFISPFGREEKAVFSHRIGDALWLTVGGEDKILPGAVVNDLLARKLEEIEEKEGRKPGGRERKRLKDDLLHELMPRAFVKSSRTDALIDLTHGYVAVDSSSRKTGENVMSDIRGLLGSFPAMPLNAEVAPRSILTGWIAGEELPTGLSLGEECEMKDPAEGGAVVKCQHQELRCDEIDKHLDAGKQVTKLALVFEDNLSFVLGDDLIVRKLKFLDGALDQLEHADDDGRRAELDARFALQSGEVRRLFLLLEEAFKLSKAD
>NZ_CP047135.1|WP_159498700.1|4508394_4509309_+|tRNA-2-thiocytidine(32)-synthetase-TtcA
MNSAVIRLPDPVPRARDPRAADAAQDKLARRLRRQVGQAIADFGMIADGDKVMVCLSGGKDSYTLLDVLLQLQKKAPVRFELVAVNLDQKQPGFPAHVLPQYLESIGVAYQIIEQDTYSVVSRVIPEGRTMCSLCSRLRRGALYRHAAENGFSKIALGHHRDDSVATFFLNLFHHAKLSAMPPKLRSDDGQHVVIRPLAYVAEDDIRAYAQARAFPIIPCNLCGSQDNLQRRQVSQMLQQWEQQHPGRIDQIARALGTVEPSQLADPALFDFMALARSPATAVPSPPSAWADATPDIGGAPGPA
>NZ_CP047135.1|WP_038691406.1|4508094_4508298_-|DUF465-domain-containing-protein
MDTLTPEQISVRLAELRQEHRVLDEQIQRMAANGEDELEAKRLKRRKLQLKDCIAKLADMLIPDEPA
>NZ_CP047135.1|WP_159498698.1|4505098_4507801_+|glycerol-3-phosphate-1-O-acyltransferase-PlsB
MKPMPNQNPLPFPGEEPPKTPDASSASPDSVAATGAPADPGQATAASSAEVDPASVAPAAIVPGTRAPVGRRPWWARLLGRLVEPWLSLKIEPEHPGQYNDGRPVVYVLEDYGLSNALILDKACREAGLPSPLVPIAGDPTGRRRAYVALSRRSSSNSLIPEQRGAKTHSDSLAKVLQAHRARDELDVHLVPVSIFVGRAPDKQSGWFAVLFSENWALVGRFRRLLAVLLNGRSTIVRFAPPISLRSTIDEGLDPERTVRKLQRVLRTHFRRIRESVIGPDLSTRRLLVDKVLDADTVREAIASQAKRDNSKPADAWKKAHAYAWEIAADYSSPVVRSASFMLSHVWNRIYAGVLVHHLDKFKAAAPGHEVVYVPSHRSHMDYLLLSYLLYDRGIVPPHIVAGINLNLPVVGTLLRKGGAFFIRRSIRGNALYSAVLSEYVAQLVAGGYSIEYFVEGGRSRTGRLLQPKGGMISMTLRAFLRQPRKPVLFQPVYIGYEKLMEGGSYLDELSGRPKEKESIWQLLWSIPKVLKQNYGQVVVNFGEPIALNDVLAQQAPDWNGQPVSEDEKPSWLSGTVDHLAERIQVHINGAADVNPINLLALALLSTPKHAMGEADLIAQIELCKTLLVEMPYSDRVTVTPHSPDRIIAHAEEINVLTRIKHPLGDVLSVSGDTAVLLSYFRNNVIHLFTASSWVACCFQNNRRMSRTGLVQLGRTVYPFLQAELFLPWTEDEFAQRIEQTINVFVREGLLQNVNEDDGGILARNTGQTDEVFRLRAIGHSLQQAFERYYIAISVLVKNGPGTLGAAELESLCQQAAQRLSLLYAPAAPEFFDRTLFRGFIQKLRELRLVWPDENSKLLFDDRLDAWAKDAKFILGRELRHTIERVSPEAAKPEEPVSTD
>NZ_CP047135.1|WP_159498696.1|4504121_4505099_+|hypothetical-protein
MSMSSKSWQYRGQAMALVLCGALLVGACKRDRIDPDAPAAEPVAALQQLARHVADNDLLGYARASVPPAHYTRLQAAWAQGHSRWPLTELPLDGQLLPMLASLSRPDAPQRLQRSFDTQIAGQATGVRQAAHSMGLFGVQYLRNQSDYTDAQRAHYSQVVDALSKWAAAAPLTDKQRARTTITLLTATARTAGLSTDAQLQAAGMEESLRRLAPFFKAFKTALASYGLALDEALTGLRGELVSELGNDAVVRVQYPLAGEQIEAQVRMTRRDGHWYVARTLEQADALLQAADAAQAAQAEHDAAEAAKAEAAAQVKDGASAPAKP
>NZ_CP047135.1|WP_159498694.1|4503051_4503879_+|trypsin-like-serine-protease
MHVLPRLALAAGFLALSLAAHAAPALPGSVPARPLIIGGEDALPGQYPFMVSLQRLDVGNSDHTRHWCGGTLISPSWVLTAAHCVERAQPGGYAVLGGATTLDTAIGNRASNIRAIHVHPAFDRNTLVNDVALIQLREPLAGVTPAQLLEGSDAGYLRTGRRFDVIGWGDTGLEGDAASPTVLQTVKTPFVPFRTCQQAYPELQAGAVICAGEEGIDSCQGDSGGPLLAQRRGAWTVLGVVSWGQGCAQAGYPGVYARLGDGYIKDFIAATWLGD
>NZ_CP047135.1|WP_159498710.1|4514497_4518952_-|glutamate-synthase-large-subunit
MAPRNRQGLYDPQDERDACGFGMVAQLDDQPSRLLVDTAIAALSRMTHRGGVAADGITGDGCGLLLRRPDVFLKALAAEAGLSLGARFAAGVVFLPHDDAAAQTCRDILEQQLRDAGCRPVGWRLVPTDPSVCGQLARDTLPRIEQVFVDAGAEQDEATFTLALFLARRRSEQQLREHADYYVTTLSPNAISYKGMVLPDKLSRFYVDLQRNDLASSAIVFHQRFSTNTLPRWPLAHPFRMLAHNGEINTIEGNRRWAQARSKVWKTPRFDIGQFDPVISMHGSDSQSLDNMLELMVSAGMDLIQALRILVPPATQSLEFKDPDLAAFYEFYGLNSEPWDGPAGIVACDGRYAACTLDRNGLRPARWMLTSDRHFLVASEAGVWEVPAERVVRKGKLGPGEMMAIDLKRGDLLDSDAIDRINRGRAPYKQWLQQGVTYLQTELIDPSLVEEPFDERTLRSYHKLFQLSTEEVEQILRPLAETEQEATGSMGDDTPMAVLSQHSRPLYDYFRQAFAQVTNPPIDPLREDCVMSLTTQLGKETNIFHAGAETVNHVILNSPVLSQRKLRQLIKMEQYVEKNRLIDLSYSLDEGLKAGIERICAEAEAAAREGIVMLLLSDRYPVADRPMVHALLATSAVHHHLSNAGLRCDVNLILETGTARDAHHMACLLGFGATAVYPYLAYQTLFDLGRRGILQLSKGGEQSQIGRRYRKGIYKGLSKIISKMGICTVASYRGAQLFEIVGLDDDVVGLCFPDTASRVAGVGFARLDDEARELTVRAWNDLLRPDVGGVLKYVHGGEYHMYNPDVVMTLQRAARSGDAADWQRYCEAVHGRPVSALRDLLQLKAAPTPTPLDQVAPAEDLFRRFDTAAISLGALSPEAHEALAIAMNRLGGRSNSGEGGEDPVRYGTEKRSKIKQVASGRFGVTAEYLVNAEVLQIKVAQGAKPGEGGQLPGHKVNELIARLRYAKPGIGLISPPPHHDIYSIEDLAQLIYDLKQVNPDALVSVKLVSHAGVGTIAAGVVKAGADLITVSGHDGGTGASPVSSIRYAGVPWELGVAESHQALVANDLRGRTLLQTDGGLKTGLDVIKAALLGADSFGFGTAPMIVLGCKYLRICHLNNCATGVATQDERLRAQYFTGLPERVENFFRLLAEEVRGWLSYLGVRSLDEIVGRTDLLQQLDVSPRPGVKVDLSRLLNPATYEGSHCAAQRLYESPDSLATQMDGLLAPAIAGKLGGEHRFLIHNTDRSIGTRLSGAIARVHGNQGMSDAPLTLRFRGTAGQSFGAFNVGGLQLEVEGEANDYVGKGMAGGRLVVRPPRGARFEARNTAIIGNTCLYGATGGELFAAGRAGERFGVRNSGALAVIEGAGDHCCEYMTDGIVLVLGKVGLNFGAGFTGGLAYVLDIDRDFVDRYNHELIDIHRISAEGFENHRQHLHTLISRHRELTGSIWAQQILDEFRDYVGKFWLVKPKAASIESLTDSLRRAA
>NZ_CP047135.1|WP_128097637.1|4519129_4519531_-|Elastase-inhibitor-AFLEI-Flags:-Precursor
MPSLSFRRLRRSIGLVAVIPALLVLAACQAPPMDEQEAVGTHAQKAAEAAAAPTDEAGKALEAPPVGTCDATQVQSLVGQAYSDKIGSQAQQDASAKQLRVLKPNDMTTMEFVGERLNIEVDEKGAISGLRCG
>NZ_CP047135.1|WP_159498712.1|4519666_4520731_+|DNA-topoisomerase-IB
MSPSRRVTPEVAAAREAGLRYVSDEMPGLQRRRAGKGFSYRDADGAAVRDAATLARIRALAIPPAYTDVWICALPNGHLQATGRDARGRKQYRYHADWARVRGDGKFDRIIAFGTALPVLRRRLRRDLKLAGFPRDKVLAIVVALLAQTLVRVGNEVYARDNRSYGLTTLRNRHLALVKGGRAQMRFRGKSGQAHEVDVDDRRLVTLIRGCQQLPGQALFQYRDDEGAVQPVDSGMVNDYLHDAMGEDFSAKDFRTWGGTLEAIRQLAITELPEPSSERALAALQKQVVCEVATLLGNTPSVCRKSYIDPCVFDGWRAGSLKALAGLRGERQWEQATLKVLKAARRTVKRARAA
>NZ_CP047135.1|WP_159498714.1|4520740_4521082_-|hypothetical-protein
MYRTLFAAAALATLSACSSTPVAQVQPIDGVISGQCHVDKVRGAVGLAASAATVERARVDSDSLQVNVVRGQHAESGPTASGAANPTPGAETGGERLTIETGRTNNITALYCG
>NZ_CP047135.1|WP_159499605.1|4521321_4522350_+|SDR-family-oxidoreductase
MVKTATRKAAAKDPRAARVAARQRRLQDQEKAKDARVAKQAAKKQGAKKATKKATQAGARKQPETMPAQQIAKPGNEHELALAPRFLAPDYKGSGKLAGKRAIITGADSGIGRAVAVLFAREGADVAVLHLDEAADAKVTRQHVEAEGGRCLVIAGDVRDPAFCNKAVKQVAKAFGGIDILVNNAAFQLHCERLEDLEDAHLQETLQTNIGGYIQMARAVLPHLKEGDCIINTGSETGLFGSKALIDYSATKGAIHAFTKALASQLLPRGIRVNAVAPGPVWTPLNPADKQSADVAEFGKDSDMGRPAQPEELSPAYVFLASPVTASYISGVILPVMGGPRG
>NZ_CP047135.1|WP_159498716.1|4522461_4523640_-|serine-hydrolase
MRFSALRTTVLVAALVVPLAGFAAPSTAWEPANAQARRFVQDTMQARHIPGLQIAVVKDGQLVLSEAYGLANVENGVAATRNTRFPLNSATKSFTGVAMAQLAQAGRVDLQAPVSRYLDDLPPAWGKVQVRQLLDHTSGLPDILDAQGLLGGSTEQAAWTQVTALPVEAAPGERHRYNQTNYVLLARIIARQAGMPYPQYMARHQFDVVGMPRTTFGDSYDLVGDAATIYSWFPRKTDAADAPQRLSHWFYDLSPGLWAGAGMLTTADEVGRWIIALSQGQLLRTTGVRRMWTPKRLNNGEPGAWSAGWPIMGTTPDLQVGGMGGARAAFIVYPERQLAVVVLTNLVGANPQDFITPIAAFYGSAPNPRGAARSGVPTTDASRPSTKRTATP
>NZ_CP047135.1|WP_038691382.1|4523841_4524228_+|BlaI/MecI/CopY-family-transcriptional-regulator
MRGKTIGDQELALLQYVAEQGGATVGEVAAGFGEERGLARSTVLTMMERLRGKAYLQRKQVQGVYRYAATSGQDSVVQGAVASFVEKTLQGSVSPFVAFMSHKAEVSDQELAELEALVAQLQSRKREG
>NZ_CP047135.1|WP_159498718.1|4524231_4526034_+|hypothetical-protein
METLMMELLVRLGWTSVQSAVLVGLVWGVCRLLPGLPPSTRVRLWWLVALQAVLGLVWSSPLELAVLPAPAAQTTQVIALPAMDAAVAVAPAAADTVAMAAPASVLWSWPAVLLAMWAAGVLVMLLHSLRGYRHSRALVRDAVECTDASLQDALQLAAEAHGLRRAPALKISAQIRSPQLIGPWAPVLLLPARELPAMSADDLDMALTHELVHLQRRDLWWGLLPALAQHLFFFHPLVHLAAREYALAREEACDGAVVAGHGHCRHDYGRLLVQLGVAPRPAVGVASASPNFRSLKRRLLSLQQTRRVPRMAALAITAVFVLVGVAPLRLVAAVAPPPPPPATPRAPATPPPAPSAPVPSPAPEPMAAPAPPSPPAPPMAPQAPRAPTSPQALDDGMPLVTHGQLTLSRQPAQAFVLMGDGDNFVNASLADLKQARRDARDDEPVLWVRRGQARYLIRDPAVLRQLGRNQSEVAALGDAQAELGDRQSEIGEQMAKLSMQVTADVMAHLDVDAVSHAAVRQTTLDAAAEANQAARQARTASAKAVDAQRIARVAREQAELGREQARLAQQQSMASARAARDVRAAIDQALSSGKAERLRD
>NZ_CP047135.1|WP_159498720.1|4526094_4526415_-|hypothetical-protein
MRLALLLTLGCALPLAACSQPPKTNAPTSEPMAAGADSAARCDAEKLNGLVGQTASEAVLAKAVKDSGARHARVLKPGMAMTMDYREDRVSIEVDEQNRIVRANCG
>NZ_CP047135.1|WP_159498722.1|4526493_4527609_-|exonuclease
MSLSLDKLRLLRRQAGDATPAPAGERMKATEGAPRAADTGMAAPSETACADRRPTHAAVLPAAANDARARTSAPASVFAWVEQEIRHKPTGAASSTPAAPAPALRTPDVGSLHRLLGLRGRGSAAAPGPRTNAQDRHVPGEEIAPGLFLIESFLPQPIPTQPLSLAFAKREGEQVQPQDLMFFDTETTGLAGGTGTRAFMIGAADWHAHPEQGDGLRIRQLLMTTMAAETAMLREFAGWLQPSTVFSSYNGRCYDAPLLKTRYRLARQRCPITPLDHVDLLFPTRRRYRGTWENCRLATIERQLLRIVREDDLPGSEAPAAWLNYLRGGSAVNLRRVAEHNHQDVVTLSLLMLRLVAEEQRARETLALQGE

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Crispr_ID: NZ_CP047135_14

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP047135_14

4589866-4589948

Orphan

Consensus_repeat	Method
CAGGTAGAGCCGACCGTCGGTCGGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP047135_14

>merge|NZ_CP047135|14|4589866-4589948|CRISPRCasFinder
CAGGTAGAGCCGACCGTCGGTCGGCGGCTGTCCGCGCAAACTATGCGACGGCCCAACACAGGTAGAGCCGACCGTTGGTCGGC

>NZ_CP047135|14|14|4589866-4589948|CRISPRCasFinder
CAGGTAGAGCCGACCGTCGGTCGGC	GGCTGTCCGCGCAAACTATGCGACGGCCCAACA
CAGGTAGAGCCGACCGTTGGTCGGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP047135.1\|WP_159498808.1\|4592844_4594107_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP047135.1\|WP_159498820.1\|4601538_4603776_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|377369
NZ_CP047135.1\|WP_128095471.1\|4588147_4588663_+\|protein-export-chaperone-SecB	unknown	unknown	gnl\|CDD\|180234
NZ_CP047135.1\|WP_159498816.1\|4597106_4598540_-\|DDE-type-integrase/transposase/recombinase	unknown	unknown	gnl\|CDD\|366234
NZ_CP047135.1\|WP_159498802.1\|4587091_4587526_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP047135.1\|WP_128095482.1\|4587605_4588043_+\|rhodanese-like-domain-containing-protein	unknown	unknown	gnl\|CDD\|238089
NZ_CP047135.1\|WP_102100653.1\|4581812_4583108_+\|acetyl-CoA-C-acetyltransferase	unknown	unknown	gnl\|CDD\|236440
NZ_CP047135.1\|WP_159498800.1\|4586590_4587061_+\|thioesterase	unknown	unknown	gnl\|CDD\|131500
NZ_CP047135.1\|WP_159498810.1\|4594261_4594798_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|374562
NZ_CP047135.1\|WP_159498814.1\|4596094_4597117_-\|AAA-family-ATPase	unknown	unknown	unknown
NZ_CP047135.1\|WP_159498804.1\|4590039_4590615_-\|Ax21-family-protein	unknown	unknown	gnl\|CDD\|275096
NZ_CP047135.1\|WP_159498796.1\|4584678_4585662_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|377333
NZ_CP047135.1\|WP_128095472.1\|4588683_4589709_+\|NAD(P)-dependent-glycerol-3-phosphate-dehydrogenase	unknown	unknown	gnl\|CDD\|234629
NZ_CP047135.1\|WP_159498794.1\|4583311_4584682_-\|heme-biosynthesis-protein-HemY	unknown	unknown	gnl\|CDD\|225613
NZ_CP047135.1\|WP_159498798.1\|4585770_4586547_-\|uroporphyrinogen-III-synthase	unknown	unknown	gnl\|CDD\|181558
NZ_CP047135.1\|WP_159498822.1\|4604448_4605237_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP047135.1\|WP_128095465.1\|4580832_4581720_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP047135.1\|WP_159498812.1\|4594847_4596098_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP047135.1\|WP_159498806.1\|4591197_4592379_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP047135.1\|WP_159498818.1\|4600855_4601398_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|372608

Protein	Function_ID	Function_description	E-value
NZ_CP047135.1\|WP_159498820.1\|4601538_4603776_-\|hypothetical-protein	gnl\|CDD\|377369	pfam04471, Mrr_cat, Restriction endonuclease. Prokaryotic family found in type II restriction enzymes containing the hallmark (D/E)-(D/E)XK active site. Presence of catalytic residues implicates this region in the enzymatic cleavage of DNA.	3.36669e-08
NZ_CP047135.1\|WP_128095471.1\|4588147_4588663_+\|protein-export-chaperone-SecB	gnl\|CDD\|180234	PRK05751, PRK05751, preprotein translocase subunit SecB; Validated.	1.97674e-69
NZ_CP047135.1\|WP_159498816.1\|4597106_4598540_-\|DDE-type-integrase/transposase/recombinase	gnl\|CDD\|366234	pfam00665, rve, Integrase core domain. Integrase mediates integration of a DNA copy of the viral genome into the host chromosome. Integrase is composed of three domains. The amino-terminal domain is a zinc binding domain pfam02022. This domain is the central catalytic domain. The carboxyl terminal domain that is a non-specific DNA binding domain pfam00552. The catalytic domain acts as an endonuclease when two nucleotides are removed from the 3' ends of the blunt-ended viral DNA made by reverse transcription. This domain also catalyzes the DNA strand transfer reaction of the 3' ends of the viral DNA to the 5' ends of the integration site.	9.29083e-07
NZ_CP047135.1\|WP_128095482.1\|4587605_4588043_+\|rhodanese-like-domain-containing-protein	gnl\|CDD\|238089	cd00158, RHOD, Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein. The cysteine containing enzymatically active version of the domain is also found in the Cdc25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and certain stress proteins such as senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions (no active site cysteine) are also seen in dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases, where they are believed to play a regulatory role in multidomain proteins.	7.14923e-25
NZ_CP047135.1\|WP_102100653.1\|4581812_4583108_+\|acetyl-CoA-C-acetyltransferase	gnl\|CDD\|236440	PRK09268, PRK09268, acetyl-CoA C-acetyltransferase.	0
NZ_CP047135.1\|WP_159498800.1\|4586590_4587061_+\|thioesterase	gnl\|CDD\|131500	TIGR02447, conserved_hypothetical_protein, thioesterase domain, putative. This family consists of a broadly distributed uncharacterized domain found often as a standalone protein. The member from Shewanella oneidensis, PDB\|1T82_A (Forouhar, et al., unpublished) is described from crystallography work as a putative thioesterase. About half of the members of this family are fused to an Acetyltransf_1 domain (pfam00583). The function of this protein is unknown.	8.04753e-50
NZ_CP047135.1\|WP_159498810.1\|4594261_4594798_-\|hypothetical-protein	gnl\|CDD\|374562	pfam16473, DUF5051, 3' exoribonuclease, RNase T-like. This is a highly divergent 3' exoribonuclease family. The proteins constitute a typical RNase fold, where the active site residues form a magnesium catalytic centre. The protein of the solved structure readily cleaves 3' overhangs in a time-dependent manner. It is similar to DEDD-type RNases and is an unusual ATP-binding protein that binds ATP and dATP. It forms a dimer in solution and both protomers in the asymmetric unit bind a magnesium ion through Asp-6 in UniProtKB:P9WJ73.	1.24162e-19
NZ_CP047135.1\|WP_159498818.1\|4600855_4601398_-\|hypothetical-protein	gnl\|CDD\|372608	pfam13455, MUG113, Meiotically up-regulated gene 113. This is a family of fungal proteins found to be up-regulated in meiosis.	8.11843e-13
NZ_CP047135.1\|WP_159498804.1\|4590039_4590615_-\|Ax21-family-protein	gnl\|CDD\|275096	TIGR04273, activator_of_XA21-mediated_immunity_Ax21, sulfation-dependent quorum factor, Ax21 family. This family consists of proteins closely related to Ax21 (Activator of XA21-mediated immunity), a protein that is secreted by a type I secretion system (RaxABC), and that appears to be sulfated on an N-terminal region tryosine in a motif LSYN. Ax21 acts in a quorum-sensing system. Homologous peptide-mediated quorum-sensing systems appear to exist in other species, such as the emerging opportunistic pathogen Stenotrophomonas maltophilia. Intriguingly, the rice genome encodes a receptor (XA21) for this protein that triggers innate immunity. [Cellular processes, Pathogenesis].	3.10924e-109
NZ_CP047135.1\|WP_159498796.1\|4584678_4585662_-\|hypothetical-protein	gnl\|CDD\|377333	pfam04375, HemX, HemX, putative uroporphyrinogen-III C-methyltransferase. This is a family of bacterial putative uroporphyrinogen-III C-methyltransferase proteins. It forms one of the members of a complex of proteins involved in the biogenesis of the inner membrane in E.coli. Uroporphorphyrin-III C-methyltransferase (HemX) is a single spanning inner membrane protein that regulates the activity of NAD(P)H:glutamyl-tRNA reductase (HemA) in the tetrapyrrole biosynthesis pathway.	4.90098e-13
NZ_CP047135.1\|WP_159498794.1\|4583311_4584682_-\|heme-biosynthesis-protein-HemY	gnl\|CDD\|225613	COG3071, HemY, Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism].	9.75386e-65
NZ_CP047135.1\|WP_159498798.1\|4585770_4586547_-\|uroporphyrinogen-III-synthase	gnl\|CDD\|181558	PRK08811, PRK08811, uroporphyrinogen-III synthase; Validated.	1.22642e-74
NZ_CP047135.1\|WP_128095472.1\|4588683_4589709_+\|NAD(P)-dependent-glycerol-3-phosphate-dehydrogenase	gnl\|CDD\|234629	PRK00094, gpsA, NAD(P)H-dependent glycerol-3-phosphate dehydrogenase.	5.15725e-179

>NZ_CP047135.1|WP_128095472.1|4588683_4589709_+|NAD(P)-dependent-glycerol-3-phosphate-dehydrogenase
MSTHAEKIAVLGAGSWGTALASLLARHGHSTVLWGRDAAMVEAIDQRHENTRYLPGIPLPASLRATTDLAAAVSDATWVLVVVPSHAFGETVRALAPLRPANAGVAWATKGFEPGSGRFLHEVAREVLGPDVPLAVVTGPSFAKEVTEGLPTAITVHGDAPAFAQQVADAMHGPAFRAYTGDDMVGAELGGAMKNVLAVATGVADGMQLGLNARAGLITRGLNEMLRLAAAIGAKPETLMGLAGLGDLVLTCTGDLSRNRRLGLALGRGQTLQDAVRDIGQVVESVQTADEVMRQARRHGIDLPISDRVRAVLHGEQTPEEGLRALLAREQKPEYPDTLFK
>NZ_CP047135.1|WP_128095471.1|4588147_4588663_+|protein-export-chaperone-SecB
MSEETTNGAVAPADAATGPAFTVEKIYVKDVSFESPNAPAVFNEAVQPELQLNLNQRVQRLGENAFEVVLAVTLTCKAGDKTAYVAEVQQAGVFGLVGLDPQSVDVLLGTQCPNILFPYVRSLVSELIQAGGFPPFFLQPINFEGLYAETLRQRQEQGETSLADSEPAGNA
>NZ_CP047135.1|WP_128095482.1|4587605_4588043_+|rhodanese-like-domain-containing-protein
MNYEELLAFAGRNPMLSMALVGLTVAIIVTEVRRLFRGFKSLKPAELTHLINAGGAIVIDLSSSSDFEKGHIAGSRNVQPSAFGPEHKLVANAKQSPVVLLCRTGNASETAAKALKKAGFEQVNVLDGGIPAWQQAELPLVKGRN
>NZ_CP047135.1|WP_159498802.1|4587091_4587526_+|hypothetical-protein
MRRLFQILLLTVFALTSVSALAAEPKTTKKQRKELEETQVKYDSTMRWGTVEDALPYLDPEYAKLHPLTDLELRRYEQVKISSYRASDNVPLPDGRVGRNAEVRVINNNTQAERTMRVKEIWRWDAEGKRWLQANGLPDLWQER
>NZ_CP047135.1|WP_159498800.1|4586590_4587061_+|thioesterase
MSNPESLSAHLAELQHVLDRMPPVAAMQIRVVSYREGMLDLGAPLAANVNDKGNAFGGSLASALTLSGWALVTLRLRLAGFDADVYVADSHVRYLAPVYEDLHAQAQAADPADWEGFLATFAQRGKARIGLVARQPGTAGKPAAELTGRFVAFARR
>NZ_CP047135.1|WP_159498798.1|4585770_4586547_-|uroporphyrinogen-III-synthase
MNSDAHVPEWTLISLRPRGQHAPLRRAAQAAGASVVALSPWALQVRDDDASRAQLARALAAQRVVFSSPAAVHAAARLLPLNAPRAGIWLAVGAGTAAALRAHTAGPVLAPTRMDSEGLLALPELAALDGLDAGLVTAPGGRGIIAATLVARGATLHRADVYQRVPLPLPPRALQRLRRRPAPWVVALSSGEALELLLAKVPQDLLPRLHASLVVAASARLADQARATGFARVCVADGPLPRQLVQAAHAAIITSASS
>NZ_CP047135.1|WP_159498796.1|4584678_4585662_-|hypothetical-protein
MTDDVSPPPAPRSLRWIVPLAVVLLIGVGVAWGLTRWQAEQARAAQAQADAGLQLQGLVDSVEALRRDQRSTSQRVQDAAATNRVLRDEMLGLSQRNALLEDNLAKLADSTRHGAQALQLEETELLLGQAAQRLAYADDVDGAKRLYALAATTLADVQGNDYLNLRQALMQERNAVDALGPGVRATTATQLAAFATALEQVPEQVDAGAGAAAGTPWWHQVLAPFVTITPTRTQGPLTDADRVAGWDSLQLELTLARAAVERGDQEGFTRSVDRVAAWLPRLWPDSPALRERRAELQQLRTRVLHPAVPELGSTLQQLRAMRDGDDR
>NZ_CP047135.1|WP_159498794.1|4583311_4584682_-|heme-biosynthesis-protein-HemY
MKPFQSLVVLLLAVALGVIASQFLGTEQLRQFGEVIYRYGGNDYRSTVPQVALMVLVGLLVLWLLWSLLASPFRAWGRYRRKQGRARLIDGIQAHEQGQWQRAEKLLDSAAEDKEVTAVAMVTAIRSAQARDDQAAVNQYLQRLAGEDATLHALLQAERLLVQERPVDAINLLDTATIQPLPPRGLWLRTEALARAERAHEAYGQLGALRKQKVLPDEAVAELETRLAAQSLLEAGDVNALAAQWEATPKALRSDPDVVSAYALRAVALDWDEPALLNIEQALDTRWDESLVTLYGQMPVDKLATRQANLQRWLANQPASPALLLALGRIATRQRQHSQAEDYLHRAIAAGAGPAAWEALGQLFVERGEPALAAQCFANALRQQRGDDSIALARADAVVTPLGPVVPERATVEEQSLMSQPLPVQPVRPLDRLDPVDPADPLVRDDRDAFGNPRLP
>NZ_CP047135.1|WP_102100653.1|4581812_4583108_+|acetyl-CoA-C-acetyltransferase
MPGISMPNARPVAILGGVRIPFCRQNTAYSDVGNLGMSVRTLGALVERFGLHGQQLGEVAMGAVIKHSSDWNLGREATLSSGLSPLTPGITMQRACGTSLDTIIAVANKIALGQIDSGIGGGSDTTSDVPIVYGKKLRARLLAANRAKSTGDKLKALTRGFKLSELKPEFPGVAEPRTGKSMGDHCEDMAKEWNISRDSQDEWAVSSHKKLAAAYERGFFNDLIAPFRGVERDNILRADTSLEKLATLKPAFDKVSGRGTLTAANSTPLTDGASAVLLASEEWARAHGHEPLAYLRDSQVAAVDFVHGEGLLMAPTIAVPEMLKRNGLTLQDFDIYEIHEAFAAQVLCTLRAWESEDYCRNRLGLDAPLGRIDPAKINPLGSSLATGHPFAATGARVIATAAKQLAERGGGRALVSICTAGGMGVVAIVER
>NZ_CP047135.1|WP_128095465.1|4580832_4581720_-|hypothetical-protein
MSKPDPGMNALGVLALELAGGDAPRHAALSSEQAGELAERVGRDLAKLVPGVSGLDFVFAGAHFDPAEVLRPGWPVHRRLEELQMRAPGRNEGPRLLAFGAGADGDVPLPFQAEATLTGGGLRVVPFLLTGTDVAQTQAVAEALEEVLLAQGMAQPDTALLAQTAFGAQIEHARFFTVNDLAAMMSMQYDNQGLAALWPVIETALMAPRSEEWLDAPPEPLLRYADGEVRMALFDPAGWCAFYNHGTGDCERLQGIYDQFLMRQRQMAAVLEAHGLPVLFVHCEAGQDARELLTR
>NZ_CP047135.1|WP_159498804.1|4590039_4590615_-|Ax21-family-protein
MMKSSLLALGLLAALPFAASATEGLSYNYVEGGYVNTDAKGGDADGWAVKGSVAVAPNFHVFGDYNAQETKRGSNDVDQWKVGVGYNYGIAPTTDLVARVAYQKFDPKHGLDFNGYSTEVGVRSAFTPNIEGYVMAGYEDYSKKHGINPDGEFYGRVGAQAKFNQNWGLAGEVKLAKGGDKEWFVGPRFTW
>NZ_CP047135.1|WP_159498806.1|4591197_4592379_+|hypothetical-protein
MTDRPTQDDSPLTEESFLTARFAGGRFDAHAIPFDVLPDLAAYRGLIVEVAKMLFKKRHNDRVRVPKGFGDSFQIGLKRVVGGHSAVVTGVRLPQLKADVQGDLGFAHYPEFDDAKAYVDALIRKVATSGEVPEDFPQELAGRFNPFGQSLRADEYIELGYDTADPVRYDTFIRKRIVLSREQTYENAVDGLFVLDGGVSSTGTIHVKDANGSAFDFRPLSEFEFDKAYSRHTQQVRLVGTGLYDGAERLRRLLDVSVVYSEDEQRQAFDDRLDEVAQTEPGWYDPDTPSPSKEAIECMRAFSKKIVLEADIPTPSIYPLPDGGVAAEWTVGVWELSANIYLHTSSIELHAVNTSTLEDISKELNIRSSDYADQFRMVWDVVSSGTGSNDAGI
>NZ_CP047135.1|WP_159498808.1|4592844_4594107_-|hypothetical-protein
MITFEPLELEATLRSAIRRLGSSFYIDLDGYPLPPDFELDLDDDWLISSDTELTLDFPRTEDGVSLPVKDLIDLSLEVTDSATSFDGLTYHSSRRTIIRMNSTDLRSHAFADRVSAAHSHELKMISEVGGKPGNISIKNDSAHFGAIIVARDHFYDKYNPPLTGDELFIEVEHPHGASITDCNALIHAYLFELHTTLGLEFFEWPRPLDDEIEYPEDEDIGELVGQAGRLRPLLIGQGLLSVLSEFNSAHGANRSDWSLLSYVKCIEYVAATVVREKQYEDLRKRLLTRDALKPNAEFMDGLLLLFEENRTLTKDAEAIRLSIERCCDPIPMAGHAPVFLRTLAKIGPSSTLAQRQASLLDLSAALTATRNQLAHAKANYRRTGKECPPEQLSSLVVCARIAAEQCIRWYSSRPEDLRRG
>NZ_CP047135.1|WP_159498810.1|4594261_4594798_-|hypothetical-protein
MPSTASSFTYLFLDTEWADAKGLELVSIALVSEDGASTFYAERDPLPLAPTEFVKTTVYPLLQRGFHALSDPSLAQALFAFLMGQRSPHVIADYPNDLRLLREVMSWASVAKGMDERPRLPCTLMDRDSVTTSHLERWFRLNPELSRSRHHALVDANGLRMAWLVSTGRLGSDFRPVV
>NZ_CP047135.1|WP_159498812.1|4594847_4596098_-|hypothetical-protein
MTDARAWKWSTFPPLALSGLGTAHVESMASYVARLSTTQGQSTVAFLDSLDEVCNERPLRNDRARCALIGPGRRFMARLIALEELTGGQILRPGTLYAIAAAIRPGSEGLANARHWCPVCLDEFSQSGVSGRLSWVFSDLSHCSLHFARIESYCWRCKSQQPFVPGNANIQSCVLCGASLAASAESAKGVSKQALWTDGCIEELVCFLSSNPPMVVPGGYESYIDRLSKMGALSKSHHAFRRGAPSIRSLLNVCAYMGVHLVDVLLCPDDLPVDRLVDGEEEPRLLSLPVESRNLQLRRLEYLLEALAGERHGLVPPLAILLERYGLSASVKQLKERNSYQCYLRRHKLQKCLLTSRTSRPIIAAAFSMLDSGVTTERAVQNLSESTRISVRALEPYVRCVGRVLVLESEARAAVL
>NZ_CP047135.1|WP_159498814.1|4596094_4597117_-|AAA-family-ATPase
MPSSQVLLHPKFQSTERDLAATLTLAQPGSLVFLIGISGVGKSELRYRSMRSVAGAPSGWDKGILPAIAVRATLTDRGFFNPKDLAMRLAHALRVPDLTWLSDRDQIDDPEVVHAKLEIAEKAQPWLDARRSTTEHALRFEFERHARARRLRWIFIEECASIGTLSRGRSVHNYVLGLMQLAEECGLTIILFGTPRAAALWDCHPDIRRRSLFVWAQRYREDRSEDHRPFASLVSSLGKHLPLERPDLLVQNLELALANSAGSYGEVKQFLLRADQARVRRDSHTIDLCDLHQASYSREHLLGMWEQAKAFDGLCEINTDAADLGYLNLKWGAAEGRVGQ
>NZ_CP047135.1|WP_159498816.1|4597106_4598540_-|DDE-type-integrase/transposase/recombinase
MSELEACLTNYRRSGNRSARLTKTQTLAVDLAVRNWEAGKAHSRGHAYAGHVAHCQDVGCEPVSRTTLYRRMSAAKASRRALLTGGLREYQKNRESTDPRYRSMASQALGLRIHIDSTQIDARVFPGVEDKLLLDRPIIYVAVDSATGFPVCYELAFGPARSDALAALLRTYVRTTGSLPSIIQVDRGSENRSSWLSAFCREYHITLLIHPTGASVFNSAAENWLGRINSRLHSLPGSTLPDKKGRSVDGRFKSRQTARLQFSALHEVVNDAIELLRDVPGADGESPIERKARLVDETGRAGHAVEIDDNFLFHSSIPTRASALDPKRGIKTERTRYASSELLQAARRGDVIEVRRDCEDPTVMHVQMSSGRCKAWSGMANKVAGLPDIELKFLAYYLHQRGSKVVERRLDAHVSHHRKVQEVLTTNDPDASEQKPSASKAARRSTKDRPASRSISVSLEGLDDYGQELREGGRDAI
>NZ_CP047135.1|WP_159498818.1|4600855_4601398_-|hypothetical-protein
MINIPLAPEAFDDIKIYYVYLIACHAALETYVKVGMTCNLKRRISEVQTGCPFRIAHAFAIPSEYWEEARGLEKLLHMLLREQRLRGEWYSGTETFFSVLDAVLRRINAGGFSYEELLETPDFVGPEFEIMLHRHDFCFYEISLPLVRGANPMDSARSLPAERIASVLSGGRATQYGELS
>NZ_CP047135.1|WP_159498820.1|4601538_4603776_-|hypothetical-protein
MAAYDFRTLNDKEFEVLCCDLLSRKLSRNFERFKPGRDGGVDGRYFSPDGEVVLQCKHWVNTPIDQLIRHLEKSEAAKVAKIKPSQYFIATSLPLSRADKSRIFRIFAPHIASESDILGAEDLNDILSRESEVERRHYKLWLASTAVLETLLNSAIHGRSDFLLSEIAEHRARYVQTGSHAAALTKLNHKHVVIITGDAGVGKTTLARNLLLPYASDGYEIFSIADSIDEAESVYQKGKKQIFYFDDFLGSNYLDAISGGFGTQISQFIRRVKSDPSKRFILTSRTTILNQGKMLIGALSDQNTAKDEFEISLQSMTAIEKAKILYNHMWHSDIGHEYREEIYKDKRYWAIIKHKNYNPRIISYITDSQRLEDIPAAQFWPHTLGMLNNPADVWSHPFDAQHDDYGRALILLVALNGRSISQGELSDAYYRHVNRQAFSSAKGQQDFIRNLRQLCGSMLNRTVNSHQEVISLFNPSIRDFLLSRYQSVPTVIGDTIRSLRTTDSLTTAISLLANSTLDSAFTRTLLSSIAGDADASAYVGYSSLYIARLYSFLYENNHNVSERDIALIGRASAFVEGENLPRQFEEIIDLYIIARRHGFSAPASIDALIEQACDKDPSMDELSKLANLMGASGCVPATDGIFREAVLAVFVDQIYDEFPAEVVFEGLSWDEGWGEAKSQLKDQLRLRLEKFGFSEDEDLVLEIAESYDFDDQAYGYYRGREEENERNYYGGDTMTRDIDDLFDRS
>NZ_CP047135.1|WP_159498822.1|4604448_4605237_-|hypothetical-protein
MDPFAPPLTGQCCLCGSTEALSGEHKVKAAALRSEFGAQPMVIGRPGERYRHAQSPSSKQFHFSARICETCNNARTQPADLAFDAFRVLASDLLRTGDDPAKVHEDPRFNANGGILYLDVFRYFAKLMCCHLAEMGATFYEPIADFAIGISDNNYVLLCVDADVAYRRLRDNGAIHSYAAHGGLIVTGNPQSHAPEAFHSTLTIGPVRYCYRIHLNEVGQAQLQHEHPDFYAWCQRRIRHAIDNPMSADDRELLGLNGVNEK

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP047135_5	5.1\|1300628\|30\|NZ_CP047135\|CRISPRCasFinder	1300628-1300657	30	NZ_CP032828	Sphingomonas sp. YZ-8 plasmid unnamed1, complete sequence	660785-660814	8	0.733
NZ_CP047135_3	3.1\|764903\|31\|NZ_CP047135\|CRISPRCasFinder	764903-764933	31	NZ_CP007797	Azospirillum brasilense strain Az39 plasmid AbAZ39_p4, complete sequence	41277-41307	10	0.677

1. spacer 5.1|1300628|30|NZ_CP047135|CRISPRCasFinder matches to NZ_CP032828 (Sphingomonas sp. YZ-8 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.733

ctgcggaaatccatggcagccgactaacgg	CRISPR spacer
ctgctgaaatcgatggcagccgagggcaag	Protospacer
**** ****** ***********  .  .*

2. spacer 3.1|764903|31|NZ_CP047135|CRISPRCasFinder matches to NZ_CP007797 (Azospirillum brasilense strain Az39 plasmid AbAZ39_p4, complete sequence) position: , mismatch: 10, identity: 0.677

ctaccggtgtctgctgcgcaccgatcatcca	CRISPR spacer
gagcctgtgtctgctgcgcaacgatctgggg	Protospacer
  .** ************** *****    .

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

2762877 : 2783930

Stenotrophomonas_phage(84.62%)

protease

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_159497360.1\|2762877_2763228_-	hypothetical protein	B7SYF7	Stenotrophomonas_phage	5.8e-22	58.3
WP_159497361.1\|2763497_2764163_+	SOS response-associated peptidase	B7SYF4	Stenotrophomonas_phage	3.7e-94	75.6
WP_159497362.1\|2764227_2765319_-	DUF2806 domain-containing protein	NA	NA	NA	NA
WP_159497363.1\|2765400_2765634_-	hypothetical protein	B7SYF2	Stenotrophomonas_phage	5.2e-27	75.3
WP_159497364.1\|2765623_2767438_-	hypothetical protein	B7SYF1	Stenotrophomonas_phage	6.3e-168	61.3
WP_159497365.1\|2767780_2768788_-	hypothetical protein	B7SYF0	Stenotrophomonas_phage	1.9e-36	34.4
WP_159497366.1\|2768784_2772390_-	hypothetical protein	B7SYE9	Stenotrophomonas_phage	0.0e+00	70.2
WP_159497367.1\|2772393_2772810_-	hypothetical protein	B7SYE8	Stenotrophomonas_phage	1.1e-51	71.0
WP_159497368.1\|2772806_2776568_-	Laminin subunit alpha-2	B7SYE7	Stenotrophomonas_phage	0.0e+00	59.1
WP_159497369.1\|2776567_2777173_-	hypothetical protein	NA	NA	NA	NA
WP_159497370.1\|2777256_2778060_-	hypothetical protein	B7SYE5	Stenotrophomonas_phage	2.6e-97	65.2
WP_159497371.1\|2778088_2778559_-	hypothetical protein	B7SYE4	Stenotrophomonas_phage	2.9e-32	52.6
WP_159497372.1\|2778545_2778887_-	hypothetical protein	B7SYE3	Stenotrophomonas_phage	4.4e-14	42.7
WP_159497373.1\|2778969_2779266_-	hypothetical protein	NA	NA	NA	NA
WP_159497374.1\|2779241_2779688_-	hypothetical protein	NA	NA	NA	NA
WP_159497375.1\|2779684_2780554_-	hypothetical protein	V5Q8V7	Xylella_phage	3.7e-49	57.4
WP_159497376.1\|2780550_2780913_-	hypothetical protein	NA	NA	NA	NA
WP_159497377.1\|2780909_2781167_-	hypothetical protein	NA	NA	NA	NA
WP_159497378.1\|2781282_2781639_-	hypothetical protein	NA	NA	NA	NA
WP_159497379.1\|2781692_2783930_-\|protease	Clp protease ClpP	A0A1B0YZU0	Pseudomonas_phage	5.1e-87	35.0

DBSCAN-SWA_2

3818047 : 3828672

Pseudomonas_phage(25.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_159498023.1\|3818047_3819121_-	3-deoxy-7-phosphoheptulonate synthase AroG	S4W5F1	Pandoravirus	3.2e-79	46.8
WP_159498024.1\|3819613_3819808_-	hypothetical protein	NA	NA	NA	NA
WP_159498025.1\|3819911_3820403_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_159498026.1\|3820698_3820965_+	hypothetical protein	A0A0M4UV99	Ralstonia_phage	1.5e-06	50.0
WP_159498027.1\|3821169_3823173_+	hypothetical protein	A0A1B1P6Z4	Rhodovulum_phage	3.1e-107	39.3
WP_159498028.1\|3823256_3824240_+	AAA family ATPase	A0A0C4UQR3	Shigella_phage	7.8e-48	37.0
WP_159498029.1\|3824329_3824626_+	hypothetical protein	NA	NA	NA	NA
WP_159498030.1\|3824622_3825111_+	hypothetical protein	NA	NA	NA	NA
WP_159498031.1\|3825125_3825755_+	DUF3164 family protein	A0A0A1IVF8	Pseudomonas_phage	2.1e-62	61.1
WP_159498032.1\|3825833_3826256_+	transcriptional regulator	A0A2H4J0B0	uncultured_Caudovirales_phage	4.4e-08	40.5
WP_159498033.1\|3826441_3826756_+	hypothetical protein	NA	NA	NA	NA
WP_159498034.1\|3826752_3827439_+	transglycosylase SLT domain-containing protein	A0A2P9JZI1	Alteromonadaceae_phage	2.5e-37	42.2
WP_159498035.1\|3827459_3827903_+	hypothetical protein	NA	NA	NA	NA
WP_159498036.1\|3828109_3828370_+	hypothetical protein	NA	NA	NA	NA
WP_159498037.1\|3828366_3828672_+	ArsR family transcriptional regulator	J9SNG3	Pseudomonas_phage	9.3e-16	46.9

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP047135

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CRISPR-Cas detection and classification

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection