CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number
NZ_CP047125	Lactobacillus hilgardii strain FLUB plasmid unnamed4	1 crisprs	NA	0	1	0
NZ_CP047126	Lactobacillus hilgardii strain FLUB plasmid unnamed5	0 crisprs	NA	0	0	0
NZ_CP047123	Lactobacillus hilgardii strain FLUB plasmid unnamed2	1 crisprs	csa3	0	1	0
NZ_CP047121	Lactobacillus hilgardii strain FLUB chromosome, complete genome	2 crisprs	csa3,cas3,DEDDh,DinG,csn2,cas2,cas1,cas9,cas14j	1	8	5
NZ_CP047124	Lactobacillus hilgardii strain FLUB plasmid unnamed3	2 crisprs	NA	0	2	0
NZ_CP047122	Lactobacillus hilgardii strain FLUB plasmid unnamed1	1 crisprs	NA	0	1	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP047125_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP047125_1

5201-5303

Orphan

Consensus_repeat	Method
GTCCGATTTTCGGATTTTCGCTCGTAGCAAGGGTTTG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP047125_1

>merge|NZ_CP047125|1|5201-5303|CRISPRCasFinder
GTCCGATTTTCGGATTTTCGCTCGTAGCAAGGGTTTGCGGGGTGTCGTCAACGAACTTTCGCGAACGTCCGATTTTCGGATTTTCGCTCGTAGCAAGGGTTTG

>NZ_CP047125|1|1|5201-5303|CRISPRCasFinder
GTCCGATTTTCGGATTTTCGCTCGTAGCAAGGGTTTG	CGGGGTGTCGTCAACGAACTTTCGCGAAC
GTCCGATTTTCGGATTTTCGCTCGTAGCAAGGGTTTG

>NZ_CP047125.1|WP_054736411.1|4205_4385_-|hypothetical-protein
MSKKIWIVIFRYLLAIGLFAIYYAVFENQNHDLIETVFAVAVGVGIATFPVKKEDKDKK
>NZ_CP047125.1|WP_159298877.1|3034_3460_-|hypothetical-protein
MFPTNQSTLIDDRATERATKDFLMSYQRWQFQLNKAILLLQQPQLDNRQLVQRRYQKALKECHLREQPLQVLGKLGPHEAFAADLLRARFLKRWSTSKTSQFLAQKYDLDYLADRTFFRDQKQALWKFAGVCPQNLLVKKL
>NZ_CP047125.1|WP_159298876.1|1924_3007_-|hypothetical-protein
MAVFREKTALHYNYQIDLINKNSGIVVVKKIKKEVFKMAQPAYLKYRLLNLPSANVVQKVYVGATYVYALQLINDNTNVVISRIPKTNVTNTYDLDFSSGEQMYLNNFGHGQTWEYFSHNGEDYWWVVTKPNGGSENWGTQLARVQYSPNTSTDTPYNGNTSVTRLALLNHATLDGSSYGTLERVEGALSSDRATLLIAGLDTNGTSHFTLYDNEALNNAMDKVDADHGYVRLDEATSMLSTGVTTPYYSIANFRSALTSSSIQGYDLSNGYAVYFSSGQAASDNHPTQDTPGVTKFTWGHTTGTQVELRNTNWADQNIETEGIQIGSSDLYIGISYHDLPYATKTLENRVYTADKSFWD
>NZ_CP047125.1|WP_054736407.1|1010_1799_+|hypothetical-protein
MKKIILTALTLGALAGGVGFLNNQSTLSVQASTTYTWGKTKTYPNPQPFYYAGKSSVYLWSKYHTTKLHNLKNYPKTTWYLSKSVQMKHNGKSAIYYAVTSGNDKVSGYIWRGYLTKGINPIVTNSTTAAESTIMDLFTGATPDSQLQTIANKNVSIDSYNDYQSMLDPSEQNRFVLLSIAGPSNSTVSKELINGDLSYKDYAKEQITNALTNFDQRDTDEYNLIKGKNLTDFNGWKIAVKALPITSAAYGGAFILLIAPAS
>NZ_CP047125.1|WP_054736405.1|365_788_+|hypothetical-protein
MKKLFVSILFVISLFTLFIVSPNNASAKNLKYGFRTATLPTHYLGIWDNHLYGHRYVLMYVKNRHTIYYKDDYETNKSITWNEKNGFLHFIVAKNKSLDKSSKRFYMYNPKENFCTLYTKHGHVYVGADISNLKMHRLKK

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP047125_1	1.1\|5238\|29\|NZ_CP047125\|CRISPRCasFinder	5238-5266	29	NC_017017	Pediococcus claussenii ATCC BAA-344 plasmid pPECL-6, complete sequence	5388-5416	0	1.0
NZ_CP047125_1	1.1\|5238\|29\|NZ_CP047125\|CRISPRCasFinder	5238-5266	29	NZ_CP014928	Lactobacillus paracollinoides strain TMW 1.1995 plasmid pL11995-4, complete sequence	6825-6853	0	1.0
NZ_CP047125_1	1.1\|5238\|29\|NZ_CP047125\|CRISPRCasFinder	5238-5266	29	NZ_CP047125	Lactobacillus hilgardii strain FLUB plasmid unnamed4	5238-5266	0	1.0
NZ_CP047125_1	1.1\|5238\|29\|NZ_CP047125\|CRISPRCasFinder	5238-5266	29	NZ_CP014920	Lactobacillus paracollinoides strain TMW 1.1994 plasmid pL11994-5, complete sequence	12632-12660	1	0.966
NZ_CP047125_1	1.1\|5238\|29\|NZ_CP047125\|CRISPRCasFinder	5238-5266	29	NC_008498	Lactobacillus brevis ATCC 367 plasmid 1, complete sequence	8763-8791	1	0.966
NZ_CP047125_1	1.1\|5238\|29\|NZ_CP047125\|CRISPRCasFinder	5238-5266	29	NC_017468	Lactobacillus helveticus H10 plasmid pH10, complete sequence	15845-15873	1	0.966
NZ_CP047125_1	1.1\|5238\|29\|NZ_CP047125\|CRISPRCasFinder	5238-5266	29	NZ_CP033891	Lactobacillus plantarum strain LMT1-48 plasmid p_3, complete sequence	3331-3359	1	0.966
NZ_CP047125_1	1.1\|5238\|29\|NZ_CP047125\|CRISPRCasFinder	5238-5266	29	NZ_CP031200	Lactobacillus brevis strain UCCLBBS449 plasmid pUCCLBBS449_B, complete sequence	39625-39653	1	0.966
NZ_CP047125_1	1.1\|5238\|29\|NZ_CP047125\|CRISPRCasFinder	5238-5266	29	NZ_CP014874	Lactobacillus backii strain TMW 1.1989 plasmid pL11989-1, complete sequence	6855-6883	2	0.931
NZ_CP047125_1	1.1\|5238\|29\|NZ_CP047125\|CRISPRCasFinder	5238-5266	29	NZ_CP027191	Lactobacillus sp. CBA3605 plasmid pCBA3605-1, complete sequence	29359-29387	2	0.931
NZ_CP047125_1	1.1\|5238\|29\|NZ_CP047125\|CRISPRCasFinder	5238-5266	29	NZ_CP027195	Lactobacillus sp. CBA3606 plasmid pCBA3606-1, complete sequence	30409-30437	2	0.931
NZ_CP047125_1	1.1\|5238\|29\|NZ_CP047125\|CRISPRCasFinder	5238-5266	29	NC_006529	Lactobacillus salivarius UCC118 plasmid pSF118-20, complete sequence	4743-4771	2	0.931
NZ_CP047125_1	1.1\|5238\|29\|NZ_CP047125\|CRISPRCasFinder	5238-5266	29	NC_015421	Lactobacillus buchneri NRRL B-30929 plasmid pLBUC03, complete sequence	1005-1033	2	0.931
NZ_CP047125_1	1.1\|5238\|29\|NZ_CP047125\|CRISPRCasFinder	5238-5266	29	NZ_CP014900	Lactobacillus backii strain TMW 1.2002 plasmid pL12002-1, complete sequence	28836-28864	2	0.931
NZ_CP047125_1	1.1\|5238\|29\|NZ_CP047125\|CRISPRCasFinder	5238-5266	29	NZ_CP014913	Lactobacillus paracollinoides strain TMW 1.1979 plasmid pL11979-1, complete sequence	22509-22537	3	0.897
NZ_CP047125_1	1.1\|5238\|29\|NZ_CP047125\|CRISPRCasFinder	5238-5266	29	NZ_CP019033	Lactobacillus fermentum strain SNUV175 plasmid pSNU175-4, complete sequence	21084-21112	3	0.897
NZ_CP047125_1	1.1\|5238\|29\|NZ_CP047125\|CRISPRCasFinder	5238-5266	29	NZ_CP017358	Lactobacillus plantarum strain TMW 1.25 plasmid pL125-4, complete sequence	4830-4858	3	0.897
NZ_CP047125_1	1.1\|5238\|29\|NZ_CP047125\|CRISPRCasFinder	5238-5266	29	NZ_CP017368	Lactobacillus plantarum strain TMW 1.277 plasmid pL1277-5, complete sequence	5771-5799	3	0.897
NZ_CP047125_1	1.1\|5238\|29\|NZ_CP047125\|CRISPRCasFinder	5238-5266	29	NZ_CP017265	Lactobacillus paracasei strain FAM18149 plasmid pFAM18149.24, complete sequence	26505-26533	3	0.897
NZ_CP047125_1	1.1\|5238\|29\|NZ_CP047125\|CRISPRCasFinder	5238-5266	29	NZ_CP019982	Pediococcus inopinatus strain DSM 20285 plasmid pLDW-12, complete sequence	10405-10433	3	0.897
NZ_CP047125_1	1.1\|5238\|29\|NZ_CP047125\|CRISPRCasFinder	5238-5266	29	NZ_CP019982	Pediococcus inopinatus strain DSM 20285 plasmid pLDW-12, complete sequence	86924-86952	3	0.897
NZ_CP047125_1	1.1\|5238\|29\|NZ_CP047125\|CRISPRCasFinder	5238-5266	29	NZ_CP017960	Lactobacillus plantarum strain C410L1 plasmid unnamed6, complete sequence	6892-6920	3	0.897
NZ_CP047125_1	1.1\|5238\|29\|NZ_CP047125\|CRISPRCasFinder	5238-5266	29	NZ_CP017960	Lactobacillus plantarum strain C410L1 plasmid unnamed6, complete sequence	20911-20939	3	0.897
NZ_CP047125_1	1.1\|5238\|29\|NZ_CP047125\|CRISPRCasFinder	5238-5266	29	NZ_CP014934	Pediococcus claussenii strain TMW 2.53 plasmid pL253-1, complete sequence	5933-5961	3	0.897
NZ_CP047125_1	1.1\|5238\|29\|NZ_CP047125\|CRISPRCasFinder	5238-5266	29	NZ_CP014937	Pediococcus claussenii strain TMW 2.54 plasmid pL254-1, complete sequence	5934-5962	3	0.897
NZ_CP047125_1	1.1\|5238\|29\|NZ_CP047125\|CRISPRCasFinder	5238-5266	29	MK994179	Lactobacillus plantarum strain PC518 plasmid plp75TA, complete sequence	4885-4913	3	0.897
NZ_CP047125_1	1.1\|5238\|29\|NZ_CP047125\|CRISPRCasFinder	5238-5266	29	NZ_CP011537	Lactobacillus fermentum 3872 plasmid pLF3872, complete sequence	7181-7209	3	0.897
NZ_CP047125_1	1.1\|5238\|29\|NZ_CP047125\|CRISPRCasFinder	5238-5266	29	NZ_AP014682	Lactobacillus hokkaidonensis JCM 18461 strain LOOC260 plasmid pLOOC260-2, complete sequence	515-543	5	0.828
NZ_CP047125_1	1.1\|5238\|29\|NZ_CP047125\|CRISPRCasFinder	5238-5266	29	MN034684	Leviviridae sp. isolate H1_Rhizo_27_scaffold_801 RNA-dependent RNA polymerase (H1Rhizo27801_000001), hypothetical protein (H1Rhizo27801_000002), and hypothetical protein (H1Rhizo27801_000003) genes, complete cds	2054-2082	7	0.759

1. spacer 1.1|5238|29|NZ_CP047125|CRISPRCasFinder matches to NC_017017 (Pediococcus claussenii ATCC BAA-344 plasmid pPECL-6, complete sequence) position: , mismatch: 0, identity: 1.0

cggggtgtcgtcaacgaactttcgcgaac	CRISPR spacer
cggggtgtcgtcaacgaactttcgcgaac	Protospacer
*****************************

2. spacer 1.1|5238|29|NZ_CP047125|CRISPRCasFinder matches to NZ_CP014928 (Lactobacillus paracollinoides strain TMW 1.1995 plasmid pL11995-4, complete sequence) position: , mismatch: 0, identity: 1.0

cggggtgtcgtcaacgaactttcgcgaac	CRISPR spacer
cggggtgtcgtcaacgaactttcgcgaac	Protospacer
*****************************

3. spacer 1.1|5238|29|NZ_CP047125|CRISPRCasFinder matches to NZ_CP047125 (Lactobacillus hilgardii strain FLUB plasmid unnamed4) position: , mismatch: 0, identity: 1.0

cggggtgtcgtcaacgaactttcgcgaac	CRISPR spacer
cggggtgtcgtcaacgaactttcgcgaac	Protospacer
*****************************

4. spacer 1.1|5238|29|NZ_CP047125|CRISPRCasFinder matches to NZ_CP014920 (Lactobacillus paracollinoides strain TMW 1.1994 plasmid pL11994-5, complete sequence) position: , mismatch: 1, identity: 0.966

cggggtgtcgtcaacgaactttcgcgaac	CRISPR spacer
cggggtgtcgtcaacgaactttcgcgaat	Protospacer
****************************.

5. spacer 1.1|5238|29|NZ_CP047125|CRISPRCasFinder matches to NC_008498 (Lactobacillus brevis ATCC 367 plasmid 1, complete sequence) position: , mismatch: 1, identity: 0.966

cggggtgtcgtcaacgaactttcgcgaac	CRISPR spacer
tggggtgtcgtcaacgaactttcgcgaac	Protospacer
.****************************

6. spacer 1.1|5238|29|NZ_CP047125|CRISPRCasFinder matches to NC_017468 (Lactobacillus helveticus H10 plasmid pH10, complete sequence) position: , mismatch: 1, identity: 0.966

cggggtgtcgtcaacgaactttcgcgaac	CRISPR spacer
cggggtgtcgtcaacgaactttcgcgaag	Protospacer
****************************

7. spacer 1.1|5238|29|NZ_CP047125|CRISPRCasFinder matches to NZ_CP033891 (Lactobacillus plantarum strain LMT1-48 plasmid p_3, complete sequence) position: , mismatch: 1, identity: 0.966

cggggtgtcgtcaacgaactttcgcgaac	CRISPR spacer
cggggtgtcgtcaacgaactttcgcgaag	Protospacer
****************************

8. spacer 1.1|5238|29|NZ_CP047125|CRISPRCasFinder matches to NZ_CP031200 (Lactobacillus brevis strain UCCLBBS449 plasmid pUCCLBBS449_B, complete sequence) position: , mismatch: 1, identity: 0.966

cggggtgtcgtcaacgaactttcgcgaac	CRISPR spacer
cggggtgtcgtcaacgaactttcgcgaat	Protospacer
****************************.

9. spacer 1.1|5238|29|NZ_CP047125|CRISPRCasFinder matches to NZ_CP014874 (Lactobacillus backii strain TMW 1.1989 plasmid pL11989-1, complete sequence) position: , mismatch: 2, identity: 0.931

cggggtgtcgtcaacgaactttcgcgaac	CRISPR spacer
cggggtgttgtcaacgaactttcgcgaat	Protospacer
********.*******************.

10. spacer 1.1|5238|29|NZ_CP047125|CRISPRCasFinder matches to NZ_CP027191 (Lactobacillus sp. CBA3605 plasmid pCBA3605-1, complete sequence) position: , mismatch: 2, identity: 0.931

cggggtgtcgtcaacgaactttcgcgaac	CRISPR spacer
cggggtgttgtcaacgaactttcgcgaat	Protospacer
********.*******************.

11. spacer 1.1|5238|29|NZ_CP047125|CRISPRCasFinder matches to NZ_CP027195 (Lactobacillus sp. CBA3606 plasmid pCBA3606-1, complete sequence) position: , mismatch: 2, identity: 0.931

cggggtgtcgtcaacgaactttcgcgaac	CRISPR spacer
cggggtgttgtcaacgaactttcgcgaat	Protospacer
********.*******************.

12. spacer 1.1|5238|29|NZ_CP047125|CRISPRCasFinder matches to NC_006529 (Lactobacillus salivarius UCC118 plasmid pSF118-20, complete sequence) position: , mismatch: 2, identity: 0.931

cggggtgtcgtcaacgaactttcgcgaac	CRISPR spacer
cggggtgtcgtcaacggactttcgcgaag	Protospacer
****************.***********

13. spacer 1.1|5238|29|NZ_CP047125|CRISPRCasFinder matches to NC_015421 (Lactobacillus buchneri NRRL B-30929 plasmid pLBUC03, complete sequence) position: , mismatch: 2, identity: 0.931

cggggtgtcgtcaacgaactttcgcgaac	CRISPR spacer
cgggttgtcgtcaacgaactttcgcgaat	Protospacer
**** ***********************.

14. spacer 1.1|5238|29|NZ_CP047125|CRISPRCasFinder matches to NZ_CP014900 (Lactobacillus backii strain TMW 1.2002 plasmid pL12002-1, complete sequence) position: , mismatch: 2, identity: 0.931

cggggtgtcgtcaacgaactttcgcgaac	CRISPR spacer
cggggtgttgtcaacgaactttcgcgaat	Protospacer
********.*******************.

15. spacer 1.1|5238|29|NZ_CP047125|CRISPRCasFinder matches to NZ_CP014913 (Lactobacillus paracollinoides strain TMW 1.1979 plasmid pL11979-1, complete sequence) position: , mismatch: 3, identity: 0.897

cggggtgtcgtcaacgaactttcgcgaac	CRISPR spacer
cggggtgtcatcaacggactttcgcgaag	Protospacer
*********.******.***********

16. spacer 1.1|5238|29|NZ_CP047125|CRISPRCasFinder matches to NZ_CP019033 (Lactobacillus fermentum strain SNUV175 plasmid pSNU175-4, complete sequence) position: , mismatch: 3, identity: 0.897

cggggtgtcgtcaacgaactttcgcgaac	CRISPR spacer
cggagtgtcgtcaacggactttcgcgaag	Protospacer
***.************.***********

17. spacer 1.1|5238|29|NZ_CP047125|CRISPRCasFinder matches to NZ_CP017358 (Lactobacillus plantarum strain TMW 1.25 plasmid pL125-4, complete sequence) position: , mismatch: 3, identity: 0.897

cggggtgtcgtcaacgaactttcgcgaac	CRISPR spacer
cggggtgtcatcaacggactttcgcgaag	Protospacer
*********.******.***********

18. spacer 1.1|5238|29|NZ_CP047125|CRISPRCasFinder matches to NZ_CP017368 (Lactobacillus plantarum strain TMW 1.277 plasmid pL1277-5, complete sequence) position: , mismatch: 3, identity: 0.897

cggggtgtcgtcaacgaactttcgcgaac	CRISPR spacer
cggggtgtcatcaacggactttcgcgaag	Protospacer
*********.******.***********

19. spacer 1.1|5238|29|NZ_CP047125|CRISPRCasFinder matches to NZ_CP017265 (Lactobacillus paracasei strain FAM18149 plasmid pFAM18149.24, complete sequence) position: , mismatch: 3, identity: 0.897

cggggtgtcgtcaacgaactttcgcgaac	CRISPR spacer
cggggtgtcatcaacggactttcgcgaag	Protospacer
*********.******.***********

20. spacer 1.1|5238|29|NZ_CP047125|CRISPRCasFinder matches to NZ_CP019982 (Pediococcus inopinatus strain DSM 20285 plasmid pLDW-12, complete sequence) position: , mismatch: 3, identity: 0.897

cggggtgtcgtcaacgaactttcgcgaac	CRISPR spacer
cggagtgttgtcaacgaactttcgcgaat	Protospacer
***.****.*******************.

21. spacer 1.1|5238|29|NZ_CP047125|CRISPRCasFinder matches to NZ_CP019982 (Pediococcus inopinatus strain DSM 20285 plasmid pLDW-12, complete sequence) position: , mismatch: 3, identity: 0.897

cggggtgtcgtcaacgaactttcgcgaac	CRISPR spacer
cggagtgttgtcaacgaactttcgcgaat	Protospacer
***.****.*******************.

22. spacer 1.1|5238|29|NZ_CP047125|CRISPRCasFinder matches to NZ_CP017960 (Lactobacillus plantarum strain C410L1 plasmid unnamed6, complete sequence) position: , mismatch: 3, identity: 0.897

cggggtgtcgtcaacgaactttcgcgaac	CRISPR spacer
cggggtgtcatcaacggactttcgcgaag	Protospacer
*********.******.***********

23. spacer 1.1|5238|29|NZ_CP047125|CRISPRCasFinder matches to NZ_CP017960 (Lactobacillus plantarum strain C410L1 plasmid unnamed6, complete sequence) position: , mismatch: 3, identity: 0.897

cggggtgtcgtcaacgaactttcgcgaac	CRISPR spacer
cggggtgtcatcaacggactttcgcgaag	Protospacer
*********.******.***********

24. spacer 1.1|5238|29|NZ_CP047125|CRISPRCasFinder matches to NZ_CP014934 (Pediococcus claussenii strain TMW 2.53 plasmid pL253-1, complete sequence) position: , mismatch: 3, identity: 0.897

cggggtgtcgtcaacgaactttcgcgaac	CRISPR spacer
cggggtgtcatcaacggactttcgcgaag	Protospacer
*********.******.***********

25. spacer 1.1|5238|29|NZ_CP047125|CRISPRCasFinder matches to NZ_CP014937 (Pediococcus claussenii strain TMW 2.54 plasmid pL254-1, complete sequence) position: , mismatch: 3, identity: 0.897

cggggtgtcgtcaacgaactttcgcgaac	CRISPR spacer
cggggtgtcatcaacggactttcgcgaag	Protospacer
*********.******.***********

26. spacer 1.1|5238|29|NZ_CP047125|CRISPRCasFinder matches to MK994179 (Lactobacillus plantarum strain PC518 plasmid plp75TA, complete sequence) position: , mismatch: 3, identity: 0.897

cggggtgtcgtcaacgaactttcgcgaac	CRISPR spacer
cggggtgtcatcaacggactttcgcgaag	Protospacer
*********.******.***********

27. spacer 1.1|5238|29|NZ_CP047125|CRISPRCasFinder matches to NZ_CP011537 (Lactobacillus fermentum 3872 plasmid pLF3872, complete sequence) position: , mismatch: 3, identity: 0.897

cggggtgtcgtcaacgaactttcgcgaac	CRISPR spacer
cggagtgtcgtcaacggactttcgcgaag	Protospacer
***.************.***********

28. spacer 1.1|5238|29|NZ_CP047125|CRISPRCasFinder matches to NZ_AP014682 (Lactobacillus hokkaidonensis JCM 18461 strain LOOC260 plasmid pLOOC260-2, complete sequence) position: , mismatch: 5, identity: 0.828

cggggtgtcgtcaacgaactttcgcgaac	CRISPR spacer
aggggtgtcgtcaacgaacttatgcggaa	Protospacer
 ******************** .***.*

29. spacer 1.1|5238|29|NZ_CP047125|CRISPRCasFinder matches to MN034684 (Leviviridae sp. isolate H1_Rhizo_27_scaffold_801 RNA-dependent RNA polymerase (H1Rhizo27801_000001), hypothetical protein (H1Rhizo27801_000002), and hypothetical protein (H1Rhizo27801_000003) genes, complete cds) position: , mismatch: 7, identity: 0.759

cggggtgtcgtcaacgaactttcgcgaac	CRISPR spacer
gctggtgtcgtcaacgaacattcgctact	Protospacer
   **************** ***** * .

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site	Prophage annotation

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_CP047122

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NZ_CP047122_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP047122_1

425-582

Orphan

Consensus_repeat	Method
AATCCCTTGGTATAAGCGGAACTGCAAAAAATGCAGTT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP047122_1

>merge|NZ_CP047122|1|425-582|CRISPRCasFinder
AATCCCTTGGTACAAGCGGAACTGCAAAAAATGCAGTTCCGCATAAGACTGCTGAATCCCTTGGTATAAGCGGAACTGCAAAAAATGCAGTTCCGCATAAGACCGTTGATAAGGACGCACAATCCCTTGGTACAAGCGGAACTGCAAAAAATGCAGTT

>NZ_CP047122|1|1|425-582|CRISPRCasFinder
AATCCCTTGGTACAAGCGGAACTGCAAAAAATGCAGTT	CCGCATAAGACTGCTGAATCCCTTGGTATAAGCGGAACTGCAAAAAATGCAGTTCCGCATAAGACCGTTGATAAGGACGCAC
AATCCCTTGGTACAAGCGGAACTGCAAAAAATGCAGTT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP047122.1\|WP_159298842.1\|2947_3163_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP047122.1\|WP_153108275.1\|6213_7004_-\|IS5-family-transposase	unknown	unknown	gnl\|CDD\|379129
NZ_CP047122.1\|WP_153152792.1\|5613_6318_+\|DNA-topoisomerase	unknown	unknown	gnl\|CDD\|236078
NZ_CP047122.1\|WP_159298841.1\|1981_2662_+\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|226648
NZ_CP047122.1\|WP_159298844.1\|7966_10162_+\|copper-translocating-P-type-ATPase	unknown	unknown	gnl\|CDD\|319850
NZ_CP047122.1\|WP_159298843.1\|3433_5494_+\|MobA/MobL-family-protein	unknown	unknown	gnl\|CDD\|367473
NZ_CP047122.1\|WP_159298839.1\|1511_1778_+\|type-II-toxin-antitoxin-system-RelB/DinJ-family-antitoxin	unknown	unknown	gnl\|CDD\|274102
NZ_CP047122.1\|WP_159298849.1\|11228_11486_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP047122.1\|WP_002817470.1\|7284_7716_+\|CopY/TcrY-family-copper-transport-repressor	unknown	unknown	gnl\|CDD\|131745
NZ_CP047122.1\|WP_159298840.1\|1799_1985_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP047122.1\|WP_159298841.1\|1981_2662_+\|AAA-family-ATPase	gnl\|CDD\|226648	COG4185, COG4185, Uncharacterized protein conserved in bacteria [Function unknown].	2.93508e-38
NZ_CP047122.1\|WP_153152792.1\|5613_6318_+\|DNA-topoisomerase	gnl\|CDD\|236078	PRK07726, PRK07726, DNA topoisomerase 3.	2.74716e-46
NZ_CP047122.1\|WP_159298844.1\|7966_10162_+\|copper-translocating-P-type-ATPase	gnl\|CDD\|319850	cd07552, P-type_ATPase_Cu-like, P-type heavy metal-transporting ATPase, similar to Archaeoglobus fulgidus CopB, a Cu(2+)-ATPase. Archaeoglobus fulgidus CopB transports Cu(2+) from the cytoplasm to the exterior of the cell using ATP as energy source, it transports preferentially Cu(2+) over Cu(+), it is activated by Cu(2+) with high affinity and partially by Cu(+) and Ag(+). This subclass of P-type ATPase is also referred to as CPx-type ATPases because their amino acid sequences contain a characteristic CPC or CPH motif associated with a stretch of hydrophobic amino acids and N-terminal ion-binding sequences. This subfamily belongs to the P-type ATPases, a large family of integral membrane transporters that are of critical importance in all kingdoms of life. They generate and maintain (electro-) chemical gradients across cellular membranes, by translocating cations, heavy metals and lipids, and are distinguished from other main classes of transport ATPases (F- , V- , and ABC- type) by the formation of a phosphorylated (P-) intermediate state in the catalytic cycle.	0
NZ_CP047122.1\|WP_159298843.1\|3433_5494_+\|MobA/MobL-family-protein	gnl\|CDD\|367473	pfam03389, MobA_MobL, MobA/MobL family. This family includes of the MobA protein from the E. coli plasmid RSF1010, and the MobL protein from the Thiobacillus ferrooxidans plasmid PTF1. These sequences are mobilisation proteins, which are essential for specific plasmid transfer.	1.24428e-102
NZ_CP047122.1\|WP_159298839.1\|1511_1778_+\|type-II-toxin-antitoxin-system-RelB/DinJ-family-antitoxin	gnl\|CDD\|274102	TIGR02384, Putative_antitoxin_RelB, addiction module antitoxin, RelB/DinJ family. Plasmids may be maintained stably in bacterial populations through the action of addiction modules, in which a toxin and antidote are encoded in a cassette on the plasmid. In any daughter cell that lacks the plasmid, the toxin persists and is lethal after the antidote protein is depleted. Toxin/antitoxin pairs are also found on main chromosomes, and likely represent selfish DNA. Sequences in the seed for this alignment all were found adjacent to toxin genes. The resulting model appears to describe a narrower set of proteins than pfam04221, although many in the scope of this model are not obviously paired with toxin proteins. Several toxin/antitoxin pairs may occur in a single species. [Cellular processes, Toxin production and resistance, Mobile and extrachromosomal element functions, Other].	4.43587e-10
NZ_CP047122.1\|WP_002817470.1\|7284_7716_+\|CopY/TcrY-family-copper-transport-repressor	gnl\|CDD\|131745	TIGR02698, Uncharacterized_16.5_kDa_protein_in_ptsI_3'region, copper transport repressor, CopY/TcrY family. This family includes metal-fist type transcriptional repressors of copper transport systems such as copYZAB of Enterococcus hirae and tcrYAZB (transferble copper resistance) of an Enterocuccus faecium plasmid. High levels of copper can displace zinc and prevent binding by the repressor, activating efflux by copper resistance transporters. The most closely related proteins excluded by this model are antibiotic resistance regulators including the methicillin resistance regulatory protein MecI. [Transport and binding proteins, Cations and iron carrying compounds, Regulatory functions, DNA interactions].	1.11136e-45
NZ_CP047122.1\|WP_153108275.1\|6213_7004_-\|IS5-family-transposase	gnl\|CDD\|379129	pfam13340, DUF4096, Putative transposase of IS4/5 family (DUF4096).	7.19916e-22

>NZ_CP047122.1|WP_159298839.1|1511_1778_+|type-II-toxin-antitoxin-system-RelB/DinJ-family-antitoxin
MAVKEKKRVQVQIDKELADNTEAVLSELGLNPTTAINMFYKRIVADAALPFKPALSEAEKANLGLLEATKERPVTELKDAIEAGDLNN
>NZ_CP047122.1|WP_159298840.1|1799_1985_+|hypothetical-protein
MKETITINDFFEIAKETDLKDLLDKSLHEPDPEKRKVYDALYTYFLDKRQDEVIKRKDFVR
>NZ_CP047122.1|WP_159298841.1|1981_2662_+|AAA-family-ATPase
MIDKPQYIIVAGINGAGKSTLYDTFPILFDKTKRINADELLRQMGGDWHKDSDNLKAMKEGIKQLHYALDHQQSIHVETTLAGRGKDQLNLIDKAHKNGFEVTLLYVALRDENLAIQRVNERVQKGGHGVPVATIKKRYQQSKHNLPLVAFKSDKVMIYDNSEKFTSVYAREKGQVFKNDLRHFPWINQNITYPEKVQKQLQNFADQNPEVKPKNDPENKNDRPSY
>NZ_CP047122.1|WP_159298842.1|2947_3163_-|hypothetical-protein
MSQSNLEKQEAKLKQLNQKIKDEKNKIEQRLGKQIISQANLNYANLSNDNIKSLSKKVSEFLKENQAHNRL
>NZ_CP047122.1|WP_159298843.1|3433_5494_+|MobA/MobL-family-protein
MAIFHMSFSNISAGKGRSAIASAAYRSGEKLFDDKEGRHYFYARSVMPESFILTPENAPEWASDREQLWNEVEKKDRKSNSRYAKEFNVALPVELSESEQKELLTKYVQENFVDEGMVADVAIHRDHPDNPHAHVMLTNRPFNPDGTWGQKTKTEYILDSHGNKTKTPAGNVRNRKIWLVDWDKKEKITEWRHNWAVSVNQVLEQKNIPDRISEKSFIEEGIDDTPMQHEGINSKRHERKEFNQQVKDYRKAKASYKNNQEKVINRGHLDSLSKHFSFNEKRVVKELSHELKTYISLENLDDKRRMLFNWKNSTLIKHAVGEDVTKQLLTINQQESSLKKADELLNKVVDRTTKKLYPELNFEQTTQAERRELIKETDSEQKVFKGSELNERLMNIRDDLLTQQLLTFTKRPYVGWKLLMQQEKEVKIELKYTLMIHDDSLESLEHVDQGLLEKYSPTEQQKITRAVKDLRAIMAVKQVIQTQYQEVLRRGFPNGNFNELPMIKQEQAYTAVMYYDPVLKPCQAETIEQWQANPPQVFSPQEHQQGLAYLSGQLSLDQLENHHLQRVLKHDGTKQLFFGECKADPTIKNSQIEKIQKQLKGQQAKDDQYRKSQLAHYQPLNYKPVSPDYYLKTAFSDAIMTVLYARDEDYQRQRQAQGLKETEWEMTKKQRQHQTRNRHEDGGMHF
>NZ_CP047122.1|WP_153152792.1|5613_6318_+|DNA-topoisomerase
MVYQRDQAIKNFKPEPYFELNAEILANQQKFVAKLDPYQRFKDETGLMTFMQAKHVQKGSQAGLIKDVQKQGKKRASPQLFSLSSLQSAMNKRYHASASQTLAAIQSLYEDKLLSYPRTDCTYITDEEFEYLVANLTKYLGVVSKPVALTNTTPNKRYVNGKKVEEHYAIIMTKVVPTKEKLASLPKLQQQVYDLVLGTRLVSFKNYLQEGQYNHLKTAVKGAFTVFPKSPTFV
>NZ_CP047122.1|WP_153108275.1|6213_7004_-|IS5-family-transposase
MPDYPSNISRAQFALIQPDLENFRKHTRPRRYDLCDVFNAILYSLTTGCQWRELPHDFPEWHTVYHYYDMWRDKPDPTADSLLESLLKKPVAYYRFAQGRSARTSFVIVDAQSVKTTDLTKNSGYDGGKKISGIKRHMAVDINGLPQAVLVTRANVSDRSGALAMFISLASQNLELVQHVMVDGGYTGNDFADQVKLILNAKTTVAKRNELHTFTVLPQRWIIERSWSWLDKCRRLWKNCERALNSSLQMVVLAFLKIVLKRY
>NZ_CP047122.1|WP_002817470.1|7284_7716_+|CopY/TcrY-family-copper-transport-repressor
MKDAKNVTITDSEWMVMRAIWTMGHATSRELIDAMNELEGWSASTTKTLLHRLIQKQAVSQHGGSRPFTYKPVVGEKESMAAAADDLFDHMCAMRAGSTIAGVIQSRELSRADIANLQAILAEKAKTAPEEVQCNCLPGDQTC
>NZ_CP047122.1|WP_159298844.1|7966_10162_+|copper-translocating-P-type-ATPase
MANKEDHMNMKNMSAKNMENNESNMSHMDHDMTETDHNQMNMDHDMAEMDHSQMNMNHGDMDMAGTDMMMHGGSMMHMGNLKVKFWVSVVLAIPVLLLAPIMGLNVSILSFSSPLIVGIIIVLFDTALYFYGGMPFLKGAKAEIQDKSPEMMTLVTLGISVSYFYSLYAFIANNFLNPANHVMDFSFELATLILIMLLGHWIEMNALMGAGDALQKMAALLPKTAHLVTDNGETKEVPVSDLKVGQAFQVRSGESIPADGVITAGESTVNEALVTGESAAVTKNVGDKVIGGATNNNGTLTVKISGTGDSGYLSQVMKMVQNAQQAKSKAEDKADLVAKYLFYAAFGVGIIAFFAWLPQGLATAMTIMVTVFVIACPHALGLAIPLVVSRSTTIGAQNGLLVRNRQAIEASQHVSHVLLDKTGTLTEGKFTVNALIPNDGIDETTLLSRLAALENNSTHPLAQAIITEAQAKDIEVVAAEKSQNIPGVGISGNVDGTDYTIVNGNYLTKQGIRFDEAAADKWAAKGNSVSFLLQGTQVQGMVAEGDTIKAGAKELISGLQRRGITPVMLTGDNPKAAEHVANLLGLTEFHAGLLPDDKQKIIADYQAKGNHVIMVGDGVNDAPSLAAADIGIAIGAGTDVAIDSADVVLVKSEPSDILHFLDLAKITNRKMVQNLWWGAGYNIVAIPLAAGVLSFIGIILDPAVGAVVMAMSTIIVAINAMGLTGEKIKNV
>NZ_CP047122.1|WP_159298849.1|11228_11486_-|hypothetical-protein
MGKKNLAIGQLAWVEVTGQPKPVLVIITGIHKLTEAADRQVARQLKTVKTITTNSVKDLDSRTRDNFDQYLAAHPQGDAFYRPKK

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP047122_1	1.1\|463\|82\|NZ_CP047122\|CRISPRCasFinder	463-544	82	NZ_CP047122	Lactobacillus hilgardii strain FLUB plasmid unnamed1	463-544	22	0.732

1. spacer 1.1|463|82|NZ_CP047122|CRISPRCasFinder matches to NZ_CP047122 (Lactobacillus hilgardii strain FLUB plasmid unnamed1) position: , mismatch: 22, identity: 0.732

ccgcataagactgctgaatcccttggtataagcggaactgcaaaaaatgcagttccgcat	CRISPR spacer
ccgcataagactgctgaatcccttggtataagcggaactgcaaaaaatgcagttccgcat	Protospacer
************************************************************

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site	Prophage annotation

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

3. NZ_CP047121

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP047121_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP047121_1

658954-659095

Orphan

Consensus_repeat	Method
ACTGTTACCTAGCCGAAACGTGCGCCAAAAAACAGCTCCCTGCCATATAAG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP047121_1

>merge|NZ_CP047121|1|658954-659095|CRISPRCasFinder
ACTGTTACCTAGCCGAAACGTGCGCCAAAAAACAGCTCCCTGCCATATAAGTAAATAAATCCAATATTCAAGTCCAGAATATTAGTTGATCACTGTTACCTAGCCGAAACGTGCGCCAAAAAACAGCTCCCGGCCATATAAG

>NZ_CP047121|1|1|658954-659095|CRISPRCasFinder
ACTGTTACCTAGCCGAAACGTGCGCCAAAAAACAGCTCCCTGCCATATAAG	TAAATAAATCCAATATTCAAGTCCAGAATATTAGTTGATC
ACTGTTACCTAGCCGAAACGTGCGCCAAAAAACAGCTCCCGGCCATATAAG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP047121.1\|WP_003552153.1\|668791_670414_+\|peptide-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|173869
NZ_CP047121.1\|WP_003552135.1\|661216_662008_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224045
NZ_CP047121.1\|WP_003552144.1\|665395_667333_+\|ABC-transporter-ATP-binding-protein/permease	unknown	unknown	gnl\|CDD\|213222
NZ_CP047121.1\|WP_003552125.1\|656544_657363_+\|bifunctional-hydroxymethylpyrimidine-kinase/phosphomethylpyrimidine-kinase	unknown	unknown	gnl\|CDD\|180561
NZ_CP047121.1\|WP_003552133.1\|659293_660904_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|179625
NZ_CP047121.1\|WP_003552119.1\|652732_653581_-\|aldo/keto-reductase	unknown	unknown	gnl\|CDD\|381297
NZ_CP047121.1\|WP_159298687.1\|648910_649756_+\|autolysin	unknown	unknown	gnl\|CDD\|119382
NZ_CP047121.1\|WP_159298824.1\|667733_668213_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP047121.1\|WP_003552141.1\|663982_664954_+\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|238558
NZ_CP047121.1\|WP_003552129.1\|658089_658944_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP047121.1\|WP_159298690.1\|662004_662985_+\|iron-chelate-uptake-ABC-transporter-family-permease-subunit	unknown	unknown	gnl\|CDD\|376439
NZ_CP047121.1\|WP_003552123.1\|655708_656497_+\|hydroxyethylthiazole-kinase	unknown	unknown	gnl\|CDD\|236477
NZ_CP047121.1\|WP_159298689.1\|657362_658019_+\|thiamine-phosphate-synthase	unknown	unknown	gnl\|CDD\|234590
NZ_CP047121.1\|WP_003552155.1\|670648_671017_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP047121.1\|WP_003552118.1\|651166_652585_-\|23S-rRNA-(uracil(1939)-C(5))-methyltransferase-RlmD	unknown	unknown	gnl\|CDD\|225174
NZ_CP047121.1\|WP_159298688.1\|649752_650031_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP047121.1\|WP_003552117.1\|650686_651133_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP047121.1\|WP_003552139.1\|662981_663983_+\|iron-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|376439
NZ_CP047121.1\|WP_003552148.1\|668309_668726_+\|OsmC-family-protein	unknown	unknown	gnl\|CDD\|376823
NZ_CP047121.1\|WP_003552120.1\|653851_654709_+\|SDR-family-NAD(P)-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|180448

Protein	Function_ID	Function_description	E-value
NZ_CP047121.1\|WP_003552153.1\|668791_670414_+\|peptide-ABC-transporter-substrate-binding-protein	gnl\|CDD\|173869	cd08504, PBP2_OppA, The substrate-binding component of an ABC-type oligopetide import system contains the type 2 periplasmic binding fold. This family represents the periplasmic substrate-binding component of an ATP-binding cassette (ABC)-type oligopeptide transport system comprised of 5 subunits. The transport system OppABCDEF contains two homologous integral membrane proteins OppB and OppF that form the translocation pore; two homologous nucleotide-binding domains OppD and OppF that drive the transport process through binding and hydrolysis of ATP; and the substrate-binding protein or receptor OppA that determines the substrate specificity of the transport system. The dipeptide (DppA) and oligopeptide (OppA) binding proteins differ in several ways. The DppA binds dipeptides and some tripeptides and is involved in chemotaxis toward dipeptides, whereas the OppA binds peptides of a wide range of lengths (2-35 amino acid residues) and plays a role in recycling of cell wall peptides, which precludes any involvement in chemotaxis. Most of other periplasmic binding proteins are comprised of only two globular subdomains corresponding to domains I and III of the dipeptide/oligopeptide binding proteins. The structural topology of these domains is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. Besides transport proteins, the PBP2 superfamily includes the ligand-binding domains from ionotropic glutamate receptors, LysR-type transcriptional regulators, and unorthodox sensor proteins involved in signal transduction.	0
NZ_CP047121.1\|WP_003552135.1\|661216_662008_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224045	COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism].	1.44297e-98
NZ_CP047121.1\|WP_003552144.1\|665395_667333_+\|ABC-transporter-ATP-binding-protein/permease	gnl\|CDD\|213222	cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein. This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.	4.9671e-99
NZ_CP047121.1\|WP_003552125.1\|656544_657363_+\|bifunctional-hydroxymethylpyrimidine-kinase/phosphomethylpyrimidine-kinase	gnl\|CDD\|180561	PRK06427, PRK06427, bifunctional hydroxy-methylpyrimidine kinase/ hydroxy-phosphomethylpyrimidine kinase; Reviewed.	2.40919e-129
NZ_CP047121.1\|WP_003552133.1\|659293_660904_+\|hypothetical-protein	gnl\|CDD\|179625	PRK03659, PRK03659, glutathione-regulated potassium-efflux system protein KefB; Provisional.	0.00501946
NZ_CP047121.1\|WP_003552119.1\|652732_653581_-\|aldo/keto-reductase	gnl\|CDD\|381297	cd19071, AKR_AKR1-5-like, AKR1/2/3/4/5 family of aldo-keto reductase (AKR) and similar proteins. Aldo-keto reductases (AKRs) are a superfamily of soluble NAD(P)(H) oxidoreductases whose chief purpose is to reduce aldehydes and ketones to primary and secondary alcohols. The family includes AKR1A/B/C/D/E/G/I, AKR2A/B/C/D/E, AKR3A/B/C/D/E/G, AKR4A/B/C, AKR5A/B/C/D/E/F/G/H, and similar proteins.	7.7113e-134
NZ_CP047121.1\|WP_003552148.1\|668309_668726_+\|OsmC-family-protein	gnl\|CDD\|376823	pfam02566, OsmC, OsmC-like protein. Osmotically inducible protein C (OsmC) is a stress -induced protein found in E. Coli. This family also contains a organic hydroperoxide detoxification protein that has a novel pattern of oxidative stress regulation.	3.63886e-18
NZ_CP047121.1\|WP_159298690.1\|662004_662985_+\|iron-chelate-uptake-ABC-transporter-family-permease-subunit	gnl\|CDD\|376439	pfam01032, FecCD, FecCD transport family. This is a sub-family of bacterial binding protein-dependent transport systems family. This Pfam entry contains the inner components of this multicomponent transport system.	1.05321e-57
NZ_CP047121.1\|WP_003552123.1\|655708_656497_+\|hydroxyethylthiazole-kinase	gnl\|CDD\|236477	PRK09355, PRK09355, hydroxyethylthiazole kinase; Validated.	1.78595e-104
NZ_CP047121.1\|WP_159298689.1\|657362_658019_+\|thiamine-phosphate-synthase	gnl\|CDD\|234590	PRK00043, thiE, thiamine phosphate synthase.	1.2905e-75
NZ_CP047121.1\|WP_003552118.1\|651166_652585_-\|23S-rRNA-(uracil(1939)-C(5))-methyltransferase-RlmD	gnl\|CDD\|225174	COG2265, TrmA, SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis].	2.15067e-143
NZ_CP047121.1\|WP_003552141.1\|663982_664954_+\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|238558	cd01138, FeuA, Periplasmic binding protein FeuA. These proteins have predicted to function as initial receptors in ABC transport of metal ions in some eubacterial species. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind their ligands in the cleft between these domains.	6.54256e-60
NZ_CP047121.1\|WP_159298687.1\|648910_649756_+\|autolysin	gnl\|CDD\|119382	cd06522, GH25_AtlA-like, AtlA is an autolysin found in Gram-positive lactic acid bacteria that degrades bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues. This family includes the AtlA and Aml autolysins from Streptococcus mutans which have a C-terminal glycosyl hydrolase family 25 (GH25) catalytic domain as well as six tandem N-terminal repeats of the GBS (group B Streptococcus) Bsp-like peptidoglycan-binding domain. Other members of this family have one or more C-terminal peptidoglycan-binding domain(s) (SH3 or LysM) in addition to the GH25 domain.	9.54742e-37
NZ_CP047121.1\|WP_003552139.1\|662981_663983_+\|iron-ABC-transporter-permease	gnl\|CDD\|376439	pfam01032, FecCD, FecCD transport family. This is a sub-family of bacterial binding protein-dependent transport systems family. This Pfam entry contains the inner components of this multicomponent transport system.	2.07634e-53
NZ_CP047121.1\|WP_003552120.1\|653851_654709_+\|SDR-family-NAD(P)-dependent-oxidoreductase	gnl\|CDD\|180448	PRK06182, PRK06182, short chain dehydrogenase; Validated.	1.55007e-128

>NZ_CP047121.1|WP_003552129.1|658089_658944_+|hypothetical-protein
MTTQSTRSLSAQFRKIQQQIDNSKPGKIIANTKLNGNQHRFKVQSHGKSIDFNGPEWLVDSFRQASENGKQLEDKYPAHKEFFERIAKLHWTWIDQMPLNSERIDRLLKLDDHELNQVFVDTLIRDSHNLLNQNLDDLAASLDNGHAKQIKIVKRLIYQAHDNYIVLFNLLFSILEMVTVQKYGQSRTATWNYNPSLNEIKRINEQIKTDRHKQFGRLLELNELDVLSGLYKFFDFNSYHLQTMPYSRHTVEHGKFDPNNYTFTEFMQLVLLSRNIAVSLKGEK
>NZ_CP047121.1|WP_159298689.1|657362_658019_+|thiamine-phosphate-synthase
MAMAFKVGMLRAYFIAGTQDIKKSNLTLPEVLTQALQSGITAFQYREKGAGSLSEEKKVDMAHTLRKLCETYKIPFIVDDDVDLALETAADGIHVGQKDERVTKVIQQVGTTMFVGLSCDTKEQVAIANETEGISYIGSGPVYPTGSKADADPVIGIAGLKKLVQSSRLPVVAIGGITEENISELPQTGVAGASVISMIAQSNDIRRTVTRMRAVFEK
>NZ_CP047121.1|WP_003552125.1|656544_657363_+|bifunctional-hydroxymethylpyrimidine-kinase/phosphomethylpyrimidine-kinase
MVNETVQALTIAGTDSGGGAGVMADIKTMQERHVFSAAVVVAVTAQNTIGVQDFMAMPKKMIDEQFASVADDLKIRACKTGMLADVPTVEAVVENLKKYDLGPLTVDPVMIAKGGARLLSEDAISTVREKLLPLADILTPNLPEAEELAGMKINDHDQMIQAAKKLQSMGVKNVLIKGGHQVESKESSDFILLETGHSFWVSSPRVDTKRTHGTGDTLSSCITAELAKGSDVETAIRTGKKYVQATIANGIQVGHGHGPLNHWAKIDKEGDD
>NZ_CP047121.1|WP_003552123.1|655708_656497_+|hydroxyethylthiazole-kinase
MKIDLLNTLREKNPIAFNISNFVTVQDVANGINALGASPIMSEEKNEAEAMVKMANSVTINLGAFTEQQLTQIDTVMTFANQYHKPIVVDPVAVGAVQYRLERCNELLAQKQVNVIRGNAGEIAALAGVEWNAKGIDAGEGAGDLVEIAKKLANKYNCTVVESGKTDIITNGDAVVKVFNESDLFKLHVGSGDMLSSTIGCFVGVEDDYFEAAQTAVVVFDVAGEVVAKAMDKPLAGSFGPQLIDELHLIDTKTVEKYANFE
>NZ_CP047121.1|WP_003552120.1|653851_654709_+|SDR-family-NAD(P)-dependent-oxidoreductase
MSRKVAIVTGASSGIGKQIAKNLHRNGMEVYAVSRKVYQMNELDDLGIHTRHLDVTDYEEVDRVVNQIAKETGRIDVLVNNAGLGVFGPAEEVDLAEGEYEFKVNVFAAMKMIQAVLPFMRKQKSGRIVNISSIDGKIYNLLGSWYVGSKFAIEGISDALRLELKPFGIDVVVIEPGAVKSSWKDTATGKMVEKAAEGPYEKLARLSADFFSLSYKFASEPRVVARMVDRAAFSRRPKTRYAGGAGAKPILFMRKVLPDKCFDSLLTALSKYAQKVLNKQTAFNR
>NZ_CP047121.1|WP_003552119.1|652732_653581_-|aldo/keto-reductase
MSLTDTYTLSNGVKIPQVGFGTWQSANGDEAYHAVLAALNAGYRHIDTAAAYGNEESVGQAIIDSGVSREDLFVTTKLWNADHGYEATKEAFGRSLEKLRLDYVDLYLIHWPNPIDFRQNWQQANTDSWRAMEEFYANGTAKAIGVSNFREKHLDALLETAKVKPMVNQLFINPSDMQPGVVNYNNNHDILTEAYSPLGTGGIFKIPELAPIGRKYGKTPAQVVLRWSLQHGFLPLPKSVHEKYIKENADIFDFNLSNIDMKTIDGFHGKAGLAIDPDTATW
>NZ_CP047121.1|WP_003552118.1|651166_652585_-|23S-rRNA-(uracil(1939)-C(5))-methyltransferase-RlmD
MILNNYRYKEGFMYTNKPQVHVEQGEQLKLTIKRLGINGEGIGYYEHKLVFVPGALPTEKVVVEVTEDLNNFIRADLIEILRKSEDRVQPVDDYANEVGGFELENLAYPKQLEFKRDVIKDSLEKYKPAGYRKYKLLPTIGMDDPIHYRNKATFQIRNDGQKVIAGLYKHRSHTVVDLKTSALQYPLTMKVMRAVVEMIDDLGIPVYDEEKNAGIIKTVVVRAATATDEAQVTFITQSKKLLKKHQLLERIDHDLPEVVSVMQNVNPGKTSLVWGEETIHLAGKDKITEVLNNLSFDLSARAFLQVNPEMTAVLYQEAFKALELSGKEKLVDAYSGVGTIGLSVARQVREVRGMDTIKDAVDDANANAIKNGIVNALYEVGEAEKLLPLWIEDGWNPTAMIVDPPRTGLADSLIDTILDITPKKFVYISCNPSTLARDLVKLTRKYNVEYIQSVDLMPQTSRCECVVKFKKK
>NZ_CP047121.1|WP_003552117.1|650686_651133_-|hypothetical-protein
MQNPFGNGNNDNNDNNDNDPRNLIPIPPNFATVVNKETGQIRIAKVGLSFTALFFQILVPVFRSDWYNFFCMLGVEVIVGMGLSMYLVQPLSITFYTGEYFLGVIWMLIYNMMYFKHLFKLGYAPADQRSKELLISARYLKDKSDNQN
>NZ_CP047121.1|WP_159298688.1|649752_650031_+|hypothetical-protein
MTFDRWIELITVTLGICGSVYGVLRVLLKPLTQRLEDVAESIRDTSNRLEQFVKDQYSIKETLAESRGEHQVINQRIDDLEDDVNELKKVKK
>NZ_CP047121.1|WP_159298687.1|648910_649756_+|autolysin
MPKLAADVAVYQSKSKAFFEKLKRYGIDSVMVKLTEGTTYVNTSASEQVSNAYQVFGTVGAYHFFHGNGLAEAKYFLAWVKNYGLDKSTVLAIDVEAQDLPANTTPQVNIFLKYLKAQGYLNVITYGSGSWFKYGRINRVALVDQRIWVAAYGVNQPGIDNANAWQYTDNFKRLHVDASYDFDGSLSGTSTKSSTKTQSSYYQATGLGLYEVVAPKANVYKKLKFDKTSKSDMSYAKGSRVWASAVKAGKITHLKLKYANGYITSNSAYVKRIRLLGGDQK
>NZ_CP047121.1|WP_003552133.1|659293_660904_+|hypothetical-protein
MYFLFYKLRWGYVMKGHFKFAVMTALLFASAGIFGIAANANADVIDAPGSAGSIKQVNAGNVLKDYDEEALNTVNNDTPQGNTSKKYAKYDLDPSGYNYANSYSTISGSSQSNTFKTKWFLPDGFNVSNLQHGNFQSVTMDDSGNVYFVESNGTNTNQGAIVKFNMAKLQQLGVNNDPLALWQAFDYFNPYTTDGTAHNQEYEDAYNQMKGSFDQIKTLTNTLNQNKSWQNNQNNYQNNAQKWYYYWKNKKSKNQKIVKSAKYSYASKQKAKKVVKQATAKMAQWMKSYQMHKKKVANYNKKITSIQNQINTYQSQVDAVKAQNPEMFKYVDIAQTAQLSPEVDIGHGQTLAFNPQNKHIYLAEDNTLTDLKTRDDNNTVLEMDPNTLNPIREYNFKMYHGDSANLQLHTLAFDKSGNAYWGRKYGKGYILFYGRLDENGVSFQASQNMVGNRGGNTNQGMSYNPQNDRVYFVSDDILTSIPAEKVRDSNFTADDIHYQAFDSKREFESLTFDQDGYGYLLALWPPELMQSTAPLN
>NZ_CP047121.1|WP_003552135.1|661216_662008_+|ABC-transporter-ATP-binding-protein
MTDSLAAKDLTAGYGHKVVIDHQDISIAQGQITGLIGPNGSGKSTLFNVLNGFESPISGTVTLSGKPISRFSARQRAQQIACLPQRTVIPDGITVFELVSYGRYCRQRGFHHLSQTDRKAINDAIQAVHMTSKADELLTSLSGGQQQRALIAMTLAQDSRILMLDEPTTYLDLTNQLEILNLLQELNAKFRKTIIIVLHDLNEAARYCHRLVCLVDGHVKATGRPIDVITKAILADVFKVDGDILHDHGCPQIMNCHTLAMPS
>NZ_CP047121.1|WP_159298690.1|662004_662985_+|iron-chelate-uptake-ABC-transporter-family-permease-subunit
MIFHKKRVLTGCLLLALGFAVLLDTLGGPKWYGISEFWRPTSKLATQILWDVRIPRVLAAMLVGILLATGGLLLQTISHNPLADPSIIGVNAGANLALIAGELAGLALTVLNAFWLALIGALLAFLVVIGFSLNKKGFSPLRLLLGGTIFSGFLSSISMAVSFMTNNTQQFRVILAGGFSGANYEQVGLLVLVAIVVVGSVFFFRTEFTLLGLDHQTTVGLGLSFKKLMGIAIALIVLAAGSSVAVGGNIGFVGVGVPQMVNFVHPGSFKANVFPIALCGGIFMLFADLISKAAVSSVELPLSALSAIVGGIVLFILVAFKKKVVK
>NZ_CP047121.1|WP_003552139.1|662981_663983_+|iron-ABC-transporter-permease
MTRRIRLVLTFMILCTIWIGLLLAVLSFGDIKLNVVEVMKSLFGLSRDFTTNFVVWQLRFPGLLASIITGGELAVSGLILQILTHNSLADSSILGINAGASLGVVIAMFVSAAVGLHLMSSWLLLAALIGGLTSSGLLMLVGRQQSAIKILLAGVALTAVLNGIILMLELEMNQFDFDKVLVWLNGSFWNLGMPFLTIQLLFGIGLIILVILMVPALNGLTLGSRGAYGIGVNVKMAGNVLMGVAILCATGAVLVGGAISFVGLMAPNIARKLVGQRVTYLLPTSWLLGCCIMMLAQFVATNAFGKTALPVGLVVSAVTMPYFIYLLFSERVD
>NZ_CP047121.1|WP_003552141.1|663982_664954_+|ABC-transporter-substrate-binding-protein
MMKKKHTYLKVLAVAMMALLFLAGCGKENSGKSANKGSASSTRVIRTASGKVKIPTDPKRIVTNVYTGDVLSLGGHVVGATAIDFASPYITKSQKKGITNLGLTMKPEAVLKLKPDLIVTSNESDVKSLKKIAPVVYIPYGTTGNIEKTATKFGQVLNRQKQARSWIAKFKSESDKQSQRLKKAGINPTKTSIGIYDMQNGKLFVDGAKWGRGGQALVTGLGFKLPASIQKIDQGAGFQQISLESLKKYSADWLFFTNTTSGKSTNKQAISDLKSNPVWKSLPAVKAGHVVQLPENKMYYFDPTAVYQQLKLVTDAMVRSVRS
>NZ_CP047121.1|WP_003552144.1|665395_667333_+|ABC-transporter-ATP-binding-protein/permease
MAYLELHDIKKSYYLGSEEFPVLKGLNLSFEQGEFVSILGESGGGKTTLMNIIGGLDSNYTGDVVLNGNSLRHDTNKQLDAYRRQTIGFIFQNFNLISHLTVLQNVMVSLEMTTLSRKQQEERAHQLLEQVGLKEHVKKFPNQLSGGQKQRVAIARALASDPEIIIADEPTGALDSQNTQEILELLDQIATDGKLVITVTHSQTVADFGTRIVRLTDGKISEDKQIKEPYKAGNENELTTHTLKFGATLKMALENMRYNLKRNILIIIGAAIGIFSVIVMLGLGNGVQGYINHEIYSQVNPNALQITKNVSSDNTDVNKSNMQTKDKNRLEKIKHVKNVQNGFYVQGGSQLRLGKQTAAISFMQTFNPTILKKSITRGDAPKGNEILLTKEIAAKLNKKHPYSLIGKKITFYQNTLNKQKRPVTLSKTLKVSGVAKANTGSTSVTYQTMKSIYGSKNISIKPNFLTLEVTGSVENVKPVQNKIKAFKNSKNKAQYMITGVGGFVDTLNTYINLAVNVLATIAGISLLVSAIMIIVVLYISVSERTKEIGILRALGTSKGSIRNLFFSEAFFIGLFSSVLAIALAEGLAAIANHIAESGINYQIMQISTGNILFGLIISIVISLLAALAPAGKAARLDPIESLSYE
>NZ_CP047121.1|WP_159298824.1|667733_668213_+|hypothetical-protein
MKAKELEIMADKKTISEKQSNQQHPKKSKESKEQVRRVIGGLHIRLEEDGKRTLATDHEFFWKIGKKTGNEGSELVDGFPELGRVAVVETKFGWRPVLVVREQTVTGEAAVKAADDLRHVSRFTANDVHTYHLVRPFKKYLKDNHIQDPRDEKNEKADK
>NZ_CP047121.1|WP_003552148.1|668309_668726_+|OsmC-family-protein
MGKYIVNAKLRKVGAQVDTQTGIHHFLVDEPVAGGGTDAGPNPVQYLLSAVSSCMAITANDIVRRQPEIKINKFEVKTAGETTKYQDGRSAVTKIQVTIHAETNLNEQDQHTFINQVIKECTVHETLKHAVPIEIKRV
>NZ_CP047121.1|WP_003552153.1|668791_670414_+|peptide-ABC-transporter-substrate-binding-protein
MKKIKLLLAGLATFVTVAVLSGCGTQSQSNKRTLNLMQTSELTTLDNTNQATLPEFNTLTNISEGLYRLNSNDQPAPAMATKLVKPTNNGKKYVFHIRKNAKWSNGDPVKAEDFEFAWKRAMNPANNPVYTYIFSGIKNADAIMANKKSYKTLGIRATGDRTLEITLDHPMTYFNKLVAMPVFMPQDKSFVTKVGAKKYGTNAKNTVSNGAFKITKWTGTNDSYQLVRNPYYWDKKAIKLDRINYKTVKDPNTAHNLFQSDKLDDATISGVTAKSLQKNKDLKRVPKAWTYYLQVNQKSGEPLANQKLREAISLVINRNELTKKVLSDGSEPASSFVSPKTSVDPITGRDFSQETSTSVEPNLQKAKRLWNQGRKEAKISGTLKLSIIGDDQDVTRNVAQFVQGQINQNLPNVKVNISNLPDKAYQNRRTNGQWQLSQWYWLADFADPINYLGILTTNNTMNPGHFSDKTYDRLVASAKKADNQTDYWRDLRQAEKRLQKLTGVIPLYYVKEDHLVNPKLSGVEYHVAGFADYTRARLAK
>NZ_CP047121.1|WP_003552155.1|670648_671017_+|hypothetical-protein
MASINGNEWKAALKSPEEFKSYMTKYFQENKELTGNYETPSYYEYYTVTLDSKEGLVVTLKTGLNQPASSLPFKDVEHLSIEEFRQLILNKKFEDQSETLTDVFTKMMASEPKSRLHKGGKK

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Crispr_ID: NZ_CP047121_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP047121_2

2452102-2452992

TypeII

Consensus_repeat	Method
GGGTTTAACATCATTGATTTAACATCCTACTAAAGC	CRT
GGGTTTAACATCATTGATTTAACATCCTACTAAAGC	CRISPRCasFinder
GGGTTTAACATCATTGATTTAACATCCTACTAAAGC	PILER-CR

13 spacers

csn2,cas2,cas1,cas9

The CRISPR arrays of NZ_CP047121_2

>merge|NZ_CP047121|2|2452102-2452992|CRT,CRISPRCasFinder,PILER-CR
TGAGTACAACACTTAAATTTAGCATCCTACTAAGGCCTGAACCAGCAAGCAAAAACATGCAAGATTGAGACATCATTGATTTAACATCCTACTAAAGCCTGAAATCCTTAAATGATCAAGTTGCCAAAGGGTTTAACATCATTGATTTAACATCCTACTAAAGCAAAAGTAAGCCATTACCTAAACAAAGACTTGGGTTTAACATCATTGATTTAACATCCTACTAAAGCAGTCAATAACTTTGTATAACTTTTTATAACGGGTTTAACATCATTGATTTAACATCCTACTAAAGCGGATAAATTGGCGTATTTGCTTGCTTCGTCGGGTTTAACATCATTGATTTAACATCCTACTAAAGCGTCGGGAACTATACGCCGCCACTCTGGATAGGGTTTAACATCATTGATTTAACATCCTACTAAAGCCATCACTGATGTCGATGGCATCGTTATTTTGGGTTTAACATCATTGATTTAACATCCTACTAAAGCAATTGAATCGCACGCGCAATCGCCTTATGAGGGTTTAACATCATTGATTTAACATCCTACTAAAGCTATCTTTTGCTGTGGCGACCGTGACCTGTGGGGTTTAACATCATTGATTTAACATCCTACTAAAGCGTAGGTTCTCTTGCGTCCCGTCGGCACTGGGGGTTTAACATCATTGATTTAACATCCTACTAAAGCATACCGTTGAGTTTATCGGCGGTAATTAAAGGGTTTAACATCATTGATTTAACATCCTACTAAAGCACAATAATAGATGTTACGAATATCTTTATTGGGTTTAACATCATTGATTTAACATCCTACTAAAGCCACGCTGTATAATGCACGTCATCCGGTTCAAGGGTTTAACATCATTGATTTAACATCCTACTAAAGC

>NZ_CP047121|2|1|2452102-2452992|CRT
TGAGTACAACACTTAAATTTAGCATCCTACTAAGGC	CTGAACCAGCAAGCAAAAACATGCAA
GATTGAGACATCATTGATTTAACATCCTACTAAAGC	CTGAAATCCTTAAATGATCAAGTTGCCAAA
GGGTTTAACATCATTGATTTAACATCCTACTAAAGC	AAAAGTAAGCCATTACCTAAACAAAGACTT
GGGTTTAACATCATTGATTTAACATCCTACTAAAGC	AGTCAATAACTTTGTATAACTTTTTATAAC
GGGTTTAACATCATTGATTTAACATCCTACTAAAGC	GGATAAATTGGCGTATTTGCTTGCTTCGTC
GGGTTTAACATCATTGATTTAACATCCTACTAAAGC	GTCGGGAACTATACGCCGCCACTCTGGATA
GGGTTTAACATCATTGATTTAACATCCTACTAAAGC	CATCACTGATGTCGATGGCATCGTTATTTT
GGGTTTAACATCATTGATTTAACATCCTACTAAAGC	AATTGAATCGCACGCGCAATCGCCTTATGA
GGGTTTAACATCATTGATTTAACATCCTACTAAAGC	TATCTTTTGCTGTGGCGACCGTGACCTGTG
GGGTTTAACATCATTGATTTAACATCCTACTAAAGC	GTAGGTTCTCTTGCGTCCCGTCGGCACTGG
GGGTTTAACATCATTGATTTAACATCCTACTAAAGC	ATACCGTTGAGTTTATCGGCGGTAATTAAA
GGGTTTAACATCATTGATTTAACATCCTACTAAAGC	ACAATAATAGATGTTACGAATATCTTTATT
GGGTTTAACATCATTGATTTAACATCCTACTAAAGC	CACGCTGTATAATGCACGTCATCCGGTTCAA
GGGTTTAACATCATTGATTTAACATCCTACTAAAGC

>NZ_CP047121|2|2|2452164-2452992|CRISPRCasFinder
GATTGAGACATCATTGATTTAACATCCTACTAAAGC	CTGAAATCCTTAAATGATCAAGTTGCCAAA
GGGTTTAACATCATTGATTTAACATCCTACTAAAGC	AAAAGTAAGCCATTACCTAAACAAAGACTT
GGGTTTAACATCATTGATTTAACATCCTACTAAAGC	AGTCAATAACTTTGTATAACTTTTTATAAC
GGGTTTAACATCATTGATTTAACATCCTACTAAAGC	GGATAAATTGGCGTATTTGCTTGCTTCGTC
GGGTTTAACATCATTGATTTAACATCCTACTAAAGC	GTCGGGAACTATACGCCGCCACTCTGGATA
GGGTTTAACATCATTGATTTAACATCCTACTAAAGC	CATCACTGATGTCGATGGCATCGTTATTTT
GGGTTTAACATCATTGATTTAACATCCTACTAAAGC	AATTGAATCGCACGCGCAATCGCCTTATGA
GGGTTTAACATCATTGATTTAACATCCTACTAAAGC	TATCTTTTGCTGTGGCGACCGTGACCTGTG
GGGTTTAACATCATTGATTTAACATCCTACTAAAGC	GTAGGTTCTCTTGCGTCCCGTCGGCACTGG
GGGTTTAACATCATTGATTTAACATCCTACTAAAGC	ATACCGTTGAGTTTATCGGCGGTAATTAAA
GGGTTTAACATCATTGATTTAACATCCTACTAAAGC	ACAATAATAGATGTTACGAATATCTTTATT
GGGTTTAACATCATTGATTTAACATCCTACTAAAGC	CACGCTGTATAATGCACGTCATCCGGTTCAA
GGGTTTAACATCATTGATTTAACATCCTACTAAAGC

>NZ_CP047121|2|1|2452230-2452992|PILER-CR
GGGTTTAACATCATTGATTTAACATCCTACTAAAGC	AAAAGTAAGCCATTACCTAAACAAAGACTT
GGGTTTAACATCATTGATTTAACATCCTACTAAAGC	AGTCAATAACTTTGTATAACTTTTTATAAC
GGGTTTAACATCATTGATTTAACATCCTACTAAAGC	GGATAAATTGGCGTATTTGCTTGCTTCGTC
GGGTTTAACATCATTGATTTAACATCCTACTAAAGC	GTCGGGAACTATACGCCGCCACTCTGGATA
GGGTTTAACATCATTGATTTAACATCCTACTAAAGC	CATCACTGATGTCGATGGCATCGTTATTTT
GGGTTTAACATCATTGATTTAACATCCTACTAAAGC	AATTGAATCGCACGCGCAATCGCCTTATGA
GGGTTTAACATCATTGATTTAACATCCTACTAAAGC	TATCTTTTGCTGTGGCGACCGTGACCTGTG
GGGTTTAACATCATTGATTTAACATCCTACTAAAGC	GTAGGTTCTCTTGCGTCCCGTCGGCACTGG
GGGTTTAACATCATTGATTTAACATCCTACTAAAGC	ATACCGTTGAGTTTATCGGCGGTAATTAAA
GGGTTTAACATCATTGATTTAACATCCTACTAAAGC	ACAATAATAGATGTTACGAATATCTTTATT
GGGTTTAACATCATTGATTTAACATCCTACTAAAGC	CACGCTGTATAATGCACGTCATCCGGTTCAA
GGGTTTAACATCATTGATTTAACATCCTACTAAAGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP047121.1\|WP_004466580.1\|2441859_2442711_-\|N-carbamoylputrescine-amidase	unknown	unknown	gnl\|CDD\|274553
NZ_CP047121.1\|WP_035444713.1\|2446599_2447451_-\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224097
NZ_CP047121.1\|WP_004466556.1\|2455092_2459226_-\|type-II-CRISPR-RNA-guided-endonuclease-Cas9	cas9	mkCas0193_cas9_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|374653
NZ_CP047121.1\|WP_004466574.1\|2445797_2446598_-\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224098
NZ_CP047121.1\|WP_159298796.1\|2461868_2462663_-\|DUF1835-domain-containing-protein	unknown	unknown	gnl\|CDD\|378848
NZ_CP047121.1\|WP_035444662.1\|2463469_2464246_-\|DUF1828-domain-containing-protein	unknown	unknown	gnl\|CDD\|378071
NZ_CP047121.1\|WP_004466550.1\|2462785_2463127_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|377540
NZ_CP047121.1\|WP_004466565.1\|2450370_2451132_+\|GAF-domain-containing-protein	unknown	unknown	gnl\|CDD\|225107
NZ_CP047121.1\|WP_004466548.1\|2463221_2463434_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP047121.1\|WP_035444664.1\|2453973_2454879_-\|type-II-CRISPR-associated-endonuclease-Cas1	cas1	cd09720_cas1_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|187851
NZ_CP047121.1\|WP_004466576.1\|2444139_2445783_-\|amidohydrolase-family-protein	unknown	unknown	gnl\|CDD\|238625
NZ_CP047121.1\|WP_035444712.1\|2448661_2449006_-\|P-II-family-nitrogen-regulator	unknown	unknown	gnl\|CDD\|223424
NZ_CP047121.1\|WP_004466559.1\|2453690_2453987_-\|CRISPR-associated-endonuclease-Cas2	cas2	mkCas0206_cas2_CAS-I:CAS-II:CAS-III	gnl\|CDD\|226043
NZ_CP047121.1\|WP_004466570.1\|2447519_2448656_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|226361
NZ_CP047121.1\|WP_035444663.1\|2460408_2461527_-\|iron-containing-alcohol-dehydrogenase-family-protein	unknown	unknown	gnl\|CDD\|341451
NZ_CP047121.1\|WP_004466567.1\|2449049_2450138_-\|spermidine/putrescine-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270308
NZ_CP047121.1\|WP_004466563.1\|2451332_2451578_+\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|238045
NZ_CP047121.1\|WP_004466554.1\|2459592_2459988_-\|pyridoxamine-5'-phosphate-oxidase-family-protein	unknown	unknown	gnl\|CDD\|334450
NZ_CP047121.1\|WP_004466561.1\|2453013_2453694_-\|type-II-A-CRISPR-associated-protein-Csn2	csn2	cd12218_csn2_CAS-II-A	gnl\|CDD\|213411
NZ_CP047121.1\|WP_004466578.1\|2442747_2444127_-\|putrescine-aminotransferase	unknown	unknown	gnl\|CDD\|183175

Protein	Function_ID	Function_description	E-value
NZ_CP047121.1\|WP_004466580.1\|2441859_2442711_-\|N-carbamoylputrescine-amidase	gnl\|CDD\|274553	TIGR03381, putative_carbon-nitrogen_hydrolase, N-carbamoylputrescine amidase. Members of this family are N-carbamoylputrescine amidase (3.5.1.53). Bacterial genes are designated AguB. The AguAB pathway replaces SpeB for conversion of agmatine to putrescine in two steps rather than one. [Central intermediary metabolism, Polyamine biosynthesis].	2.28716e-176
NZ_CP047121.1\|WP_035444713.1\|2446599_2447451_-\|ABC-transporter-permease	gnl\|CDD\|224097	COG1176, PotB, ABC-type spermidine/putrescine transport system, permease component I [Amino acid transport and metabolism].	1.9844e-87
NZ_CP047121.1\|WP_004466556.1\|2455092_2459226_-\|type-II-CRISPR-RNA-guided-endonuclease-Cas9	gnl\|CDD\|374653	pfam16592, Cas9_REC, REC lobe of CRISPR-associated endonuclease Cas9. The REC lobe of Cas9 - the CRISPR-associated endonuclease Cas9 - includes the REC1 and REC2 domains. REC1 forms an elongated, alpha-helical structure consisting of 25 alpha helices and two beta-sheets, whereas REC2 inserted within REC1 adopts a six-helix bundle structure. The REC lobe and the NUC lobe of Cas9 fold to present a positively charged groove at their interface which accommodates the negatively charged sgRNA:target DNA heteroduplex. CRISPR (clustered regularly interspaced short palindromic repeat)-Cas system occurs naturally in bacteria as a defense against invasion by phages or other mobile genetic elements. Cas9 is targeted to specific genomic locations by sgRNAs or single guide RNAs, in order to complex with invading DNA in order to cleave it and render it inactive.	2.03492e-132
NZ_CP047121.1\|WP_004466574.1\|2445797_2446598_-\|ABC-transporter-permease	gnl\|CDD\|224098	COG1177, PotC, ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport and metabolism].	1.12175e-87
NZ_CP047121.1\|WP_159298796.1\|2461868_2462663_-\|DUF1835-domain-containing-protein	gnl\|CDD\|378848	pfam12395, DUF3658, Protein of unknown function. This domain family is found in bacteria, and is approximately 110 amino acids in length. The family is found in association with pfam08874. There are two completely conserved residues (D and R) that may be functionally important.	3.21474e-17
NZ_CP047121.1\|WP_035444662.1\|2463469_2464246_-\|DUF1828-domain-containing-protein	gnl\|CDD\|378071	pfam08861, DUF1828, Domain of unknown function DUF1828. This presumed domain is functionally uncharacterized.	3.85567e-18
NZ_CP047121.1\|WP_004466550.1\|2462785_2463127_+\|hypothetical-protein	gnl\|CDD\|377540	pfam05656, DUF805, Protein of unknown function (DUF805). This family consists of several bacterial proteins of unknown function.	0.00645657
NZ_CP047121.1\|WP_004466565.1\|2450370_2451132_+\|GAF-domain-containing-protein	gnl\|CDD\|225107	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription].	8.21489e-15
NZ_CP047121.1\|WP_035444664.1\|2453973_2454879_-\|type-II-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|187851	cd09720, Cas1_II, CRISPR/Cas system-associated protein Cas1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas1 is the most universal CRISPR system protein thought to be involved in spacer intergration. Cas1 is metal-dependent deoxyribonuclease, also binds RNA; Shown to possess a unique fold consisting of a N-terminal beta-strand domain and a C-terminal alpha-helical domain.	3.50018e-99
NZ_CP047121.1\|WP_004466576.1\|2444139_2445783_-\|amidohydrolase-family-protein	gnl\|CDD\|238625	cd01300, YtcJ_like, YtcJ_like metal dependent amidohydrolases. YtcJ is a Bacillus subtilis ORF of unknown function. The Arabidopsis homolog LAF3 has been identified as a factor required for photochrome A signalling.	9.35215e-93
NZ_CP047121.1\|WP_035444712.1\|2448661_2449006_-\|P-II-family-nitrogen-regulator	gnl\|CDD\|223424	COG0347, GlnK, Nitrogen regulatory protein PII [Amino acid transport and metabolism].	4.76416e-29
NZ_CP047121.1\|WP_004466559.1\|2453690_2453987_-\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|226043	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms].	3.35428e-25
NZ_CP047121.1\|WP_004466570.1\|2447519_2448656_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|226361	COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism].	3.6073e-167
NZ_CP047121.1\|WP_035444663.1\|2460408_2461527_-\|iron-containing-alcohol-dehydrogenase-family-protein	gnl\|CDD\|341451	cd08172, GlyDH-like, Glycerol_dehydrogenase-like. This family contains glycerol dehydrogenase (GlyDH)-like proteins that have yet to be characterized, but show sequence homology with glycerol dehydrogenase. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent; the zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.	1.49438e-175
NZ_CP047121.1\|WP_004466567.1\|2449049_2450138_-\|spermidine/putrescine-ABC-transporter-substrate-binding-protein	gnl\|CDD\|270308	cd13590, PBP2_PotD_PotF_like, The periplasmic-binding component of ABC transporters involved in uptake of polyamines; possess the type 2 periplasmic binding fold. This family represents the periplasmic substrate-binding domain that functions as the primary high-affinity receptors of ABC-type polyamine transport systems. Polyamine transport plays an essential role in the regulation of intracellular polyamine levels which are known to be elevated in rapidly proliferating cells and tumors. Natural polyamines are putrescine, spermindine, and spermine. They are polycations that play multiple roles in cell growth, survival and proliferation, and plant stress and disease resistance. They can interact with negatively charged molecules, such as nucleic acids, to modulate their functions. Members of this family belong to the type 2 periplasmic-binding fold superfamily. PBP2 is comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	1.77015e-104
NZ_CP047121.1\|WP_004466563.1\|2451332_2451578_+\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|238045	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators.	3.1284e-11
NZ_CP047121.1\|WP_004466554.1\|2459592_2459988_-\|pyridoxamine-5'-phosphate-oxidase-family-protein	gnl\|CDD\|334450	pfam01243, Putative_PNPOx, Pyridoxamine 5'-phosphate oxidase. Family of domains with putative PNPOx function. Family members were predicted to encode pyridoxamine 5'-phosphate oxidase, based on sequence similarity. However, there is no experimental data to validate the predicted activity and purified proteins, such as yeast YLR456W and its paralogs, do not possess this activity, nor do they bind to flavin mononucleotide (FMN). To date, the only time functional oxidase activity has been experimentally demonstrated is when the sequences contain both pfam01243 and pfam10590. Moreover, some of the family members that contain both domains have been shown to be involved in phenazine biosynthesis. While some molecular function has been experimentally validated for the proteins containing both domains, the role performed by each domain on its own is unknown.	6.77413e-13
NZ_CP047121.1\|WP_004466561.1\|2453013_2453694_-\|type-II-A-CRISPR-associated-protein-Csn2	gnl\|CDD\|213411	cd12218, Csn2, CRISPR/Cas system-associated protein Csn2. Csn2 is a Nmeni subtype-specific Cas protein, which may function in the adaptation process which mediates the incorporation of foreign nucleic acids into the microbial host genome. Csn 2 may interact directly with double-stranded DNA. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA. Csn2 has been predicted to be a functional analog of Cas4 based on anti-correlated phyletic patterns; also known as SPy1049 family.	5.53875e-77
NZ_CP047121.1\|WP_004466578.1\|2442747_2444127_-\|putrescine-aminotransferase	gnl\|CDD\|183175	PRK11522, PRK11522, putrescine--2-oxoglutarate aminotransferase; Provisional.	0

>NZ_CP047121.1|WP_004466563.1|2451332_2451578_+|helix-turn-helix-transcriptional-regulator
MFYQKLKLLRKKYQYTQEDLAKALNYTQGAINSWEHNISRPPLEIICQINRIFKVSTDYLICKPESITLNSKKIRQRKHKS
>NZ_CP047121.1|WP_004466565.1|2450370_2451132_+|GAF-domain-containing-protein
MKTFSTNDLYVLNNIVHHIYCCKNPNQMREQLISQLSFLLDFDGSTFYLASPQNDQQLTSPVVVNIDPVFGQKYLACYDQLDYSKGLMFTGRSMTYRESDIIPDTQRIHSKYYQIFYAKYGFHYSLHSSIAFQGHFLGILSFFRTKGKPNFTQNDIELIGLLTNHLEARLFNDYQAACSCKNKLTLHDAALRYGLTKRQQVITRSLLDGMDNDEICAQLYITNNTLKKHILNVYRKLGINNRVQLFKMVREKE
>NZ_CP047121.1|WP_004466567.1|2449049_2450138_-|spermidine/putrescine-ABC-transporter-substrate-binding-protein
MLLRIGGELMKRLKALLLSIVLVICLFILSGCASSHAAKHSKTLNVIGWSEYVPQSVLDQFTKETGIKINYTSYSDPDQMLSKVLSSANGTYDMVLAPGMYVQVLRKLGRLDKLNKAEIPNYRNLSQTALNEPYDKSNQYSAPYLGTVMGIAYNDKKVKTPITSYQDLLKPEFKDALVTVEDSRAVVGCALMATGHKINDTSKSALSDASKYLAKLKPNIKIFDGSSPKTSLINGEVSAGLIYGGEIALAMQNNHDIKIVYPKESIYFAYDVFMKLKKAPNGTNVDKFINYMLEPKTSVKFSKAFPYYNPNKKAVKLLPKKLRDNPAVTVPNNILARSQTVLNLGRNTTKIDKVWNDFKGDQ
>NZ_CP047121.1|WP_035444712.1|2448661_2449006_-|P-II-family-nitrogen-regulator
MKKLEITIRPENLEEVKQILSDRGVSGMTILSAMGAGNQKGEKTTTILKGGEFHINLLPKIHVITYVKDHLVGNILIDIHERLSTGEVGDGKVIVSPLEEVMRIRTGERGENAL
>NZ_CP047121.1|WP_004466570.1|2447519_2448656_-|ABC-transporter-ATP-binding-protein
MTDMKEMIKLSSIKKNYGDVKIIKDLNFTVYEGEFLTMLGPSGCGKTTTLRMIAGFEEPTSGEILLDEKPVGDLPPYKRKINTVFQNYALFPHLTVAQNIAFGLKMAKVPKPKRSLQVEKMLKLVQLEGYGNRKLDQLSGGQKQRIAIARALINHPQVLLLDEPLSALDLKLRKQMQLELKRLQRKLGITFVYVTHDQEEALMMSDRIAVMNKGHLEQIADPRTLYEKPKTCFVANFIGESNIFYGKVSEITKAGAKVTIENGYLSIQSKKPVSESQIVNIVIRPEKVKLSETEVAGFHIPATVAEHYYAGNMNKTVLRLPNGMALKMNTPGEQVLLPIGTSVFVYWELSDAILVETASDDVYNVVDNPDFSTVNQQS
>NZ_CP047121.1|WP_035444713.1|2446599_2447451_-|ABC-transporter-permease
MSKTLTKWSQILPISLWMLLLVVIPLIYVLVMSFMSRDFYGGIVYKLTLNNFAQVFETQNLMIYAQSIWIGGLSTIICLIIAYPFAMFIAQKGPVAKTILMALVIVPSVSNSLVRLFSWVTLLRKTGIVNTTLEKLGIINHPLAMVYNTNGIVLGMVYLLLMFMIIPIFNSLDRIDHNLIEAAEDLGATKWQILKEIIIPLSKPGIFAGCIMVFIPSLGYFFVSDVMGGGTSTMMGNLIENQFQTSRNWPLGSAISVMLILLTIILLIVFQRRGGDMSDLGGR
>NZ_CP047121.1|WP_004466574.1|2445797_2446598_-|ABC-transporter-permease
MEKSNSGSLWKNSLIGLVFVFLYLPILVIVVFSFNTSKLNILFKGFTTKWYYLVFQNVQIMSALENTLIVGIVSAALATVIGTVGAVAMNKYDFPGKAVLDKVLYIPIVIPEVVLGIALLSIYSLAGIPLSLFSLILAHVTFCIPFVVLTVRSRLIGIDQTLEEAALDLGATPFKAFMQVMLPLLIPGVISGAGFSFALSIDDVIISFFTTGPASTTFPLQVYAMVKTGITPEINAISTLMMLVIVLGIAVNAVFQVRKIKRSKGK
>NZ_CP047121.1|WP_004466576.1|2444139_2445783_-|amidohydrolase-family-protein
MAKVQILKSNSIFTAESEKFISGAIVVVDHQIAGVYPDQIPTRFLATRPTVTNFGDQTIVPGFIESHSHMFLSALVYCHQITLISGNSELACAKELDQKVIRDQLKPEQWIVAKGWYVPSWTDKRMPCRATLDRYFPDHPVAVIADDLHTLWLNTEALNKLLPSVNSTRFDKDVVVTARGDPTGVIGEQTAMAFLHQIFNYSTEQKAAVLGPYLKHLTKFGLTSICDLALLPAKTAAELDDQIYPAAYHLLAHQNRLPIRVHLYPYFKRGVGPLKQLSARYATERIRVAGGKLFFDGVTSSYTAWMKAAYEGKEDHGRPMIPASEMKQLIFSAQANQLPLRIHAIGDRAIHEALVDFIAAKNQFGQLKTGQHCLEHLETIDPTDLSLMAQSGVVASVQPSHPLLDYQTADLYVGKRSQTMWPFLFFETHHIPMAFGTDSPVVVNVTPMQNIYFAMTSQTLIGEPAKGWHADQRLNLGQALLAHTINAAKACSYENKIGSLSAGKFADITVLDRNLEHTTARDMKDVQVVGTMVGGEWQYQKTSQLIK
>NZ_CP047121.1|WP_004466578.1|2442747_2444127_-|putrescine-aminotransferase
MEKEPITKDASKESVIDDLDEILGFIKGNEMTDDQKDKMTKDTLNYFDNYVSPGWLKYRKSVSTDAAVLEWTDQDAVIHGLKGEEFIDCLGGFGIYTSGHRNKYILDAVKAQLEHQALHSQELLDPLRGYLAKAVADITPGDLEKCFFTNGGAEAVEMALKLARIATGGRWYISTIGAFHGKSMGAISMGGKGTYRKPYIPMVQQVEHVEYGNAEDMRKAIRNLVAVGETVAAVIIEPVQGEAGIIVPPKGYLKEVREICDEYGVALIFDEIQCGMGRTGSMWRCEAEDVVPDILTYGKAFGGGIMPITGLICRPKMWVQQLIDNPWLLGSPTFGGNPVCCAAAIATISYMLKADIPGQARAKGNYLIPKLQALADEFPEVIQEVRGIGLMIGVEFYSDEIGYSVAKGLFDRGVLTAGTLVNSKTIRFEPPAIIEYDQLDQVIERMHGALEDTKEKFGL
>NZ_CP047121.1|WP_004466580.1|2441859_2442711_-|N-carbamoylputrescine-amidase
MRKVKVAATQMACKWDTAQNLTKAEELIKGAAKAGAQIILLQELFETPYFCHQEKYKYFELATPLNENPVIARLSFLAKKLAVVLPVSFFERYGNTFFNSLVVIDADGKVLDVYRKTHIPDGHNYEEKFYFSPGDTGFKVWKTKYGRIGAGICWDQWFPETARILTLMGAEIIFYPTAIGSEPVLKRDSQPHWQRTIQGHSAANLIPVVVSNRIGTEIDETQMTFYGTSFITDQFGDILKQADRKTEDFIVAELDLDEANKTRRDWGVFRDRRPEMYRKLLSM
>NZ_CP047121.1|WP_004466561.1|2453013_2453694_-|type-II-A-CRISPR-associated-protein-Csn2
MIISYASHQPVKVSNEQVTVIGTNSSVVYQDLLRGFRDGGQIKVCSDTYDELEVSKTIDLVGDVCTGGEEIERRYLSRITKAFLDDLTDPQRNRIHDSLNRLYNTVQEQLYMIDLPIEVTYDFDLKELTRFAKIHFDSGTANNPCAMIESILKVYEECHLKTTLIFTNVRQYLSIDQLREIEAMIKEIRVSVVLIEFTEMEHQDFYGNADFYYIDEDFVDWHNANH
>NZ_CP047121.1|WP_004466559.1|2453690_2453987_-|CRISPR-associated-endonuclease-Cas2
MIMFDLPVDTAHQRREYRRFRKQLINEGFLMIQYSVYVRVCVSRQSANFMEKRVSTFLPEAGVIQSLMLTEKQYSDMHFLTGKPKEDVRNTSDRTVIL
>NZ_CP047121.1|WP_035444664.1|2453973_2454879_-|type-II-CRISPR-associated-endonuclease-Cas1
MGWRSVIITQHAKLSYSSHMMIVQTNDGINQIPIDDISILLISTTRAVITTALISELAQVGTKVIFTDGTNQPICETVGYYPNNRSVKLLQEQVNWDEQRKEVLWTKIVGSKMTNQVNVLAFYKKDTTEVNEELDKLEVADPSNREAVVARKYFPLLFNNDFSRRNGSAINSALDYGYSILLSSINQEIVSNGYLTYIGIHHRGEENPFNLGSDLMEPFRPVVDFWIASQKFDQLTPDVKYGLVQLLSMEIGFNGKSTLLKNALTEHVRNCLKYLSGKSNKIQIEVGFRDEVPNNAINDNV
>NZ_CP047121.1|WP_004466556.1|2455092_2459226_-|type-II-CRISPR-RNA-guided-endonuclease-Cas9
MESNHDGEQVKYTLGLDIGTSSIGYAAIDKHQKPIRAKGKHVIGVRLFQEGQTAADRRAFRTTRRRLKRRKWRLNLLNRLFDPYLSEVDPNFLPRLRQSNLSPKDDNKHFNGSTLFPDKTDAAFYRQYPTMYHLRYALMTEKRKFDIREVYLAIHHIVKYRGNFLNSATVDSFKTSNIDFTSQFDRLNELYRQVILDEPFQINMDQVDEMTNKLLDNDALKLDTQKQVAKLLPVIYNDKPIDKQYTRIATEFSKAILGYKTKLDVILNLDTQNAKDWVIRLDDEDIDDKLPALVENLDESRQEIVTIIRDLYAQITLNAIVPKGKSLSESMVDKYNDHKDHLDLLMGLIHELGDDSAKGIKLREAYTQYVGKSDDKTLNQDDFYAAIKKNLDEDSKRSPKIQRLIEQASFMPKQRTSANGVIPHQLHQLELDRIIENQGRYYPFLKKPNPNTHKPNGGKYKLDELVAFRIPYYVGPLITKRDQEKTSGADFAWMIRKPGQEGEITPWNFDQKVDRMASANRFIRRMTTKDSYLVAEDVLPDASLIYEKFKALNELNMLKVNDSRLSPSQKQDLFNNLFKKQKTIRTKKLQTYIRTNWELPSVMISGLADPDKFNSSLSTYIDFRDIFGEKVDDPNRQADYEEIIEWSTVFEDRKIYQAKLNQLDWLTEPQRKALLTKRYTGWGRLSKKLLTGLKDQNGDSILDQLWKTNDNFMQIQSRDEFAKQIHDENAKQFHEANNVDDILDDAFTSPQNKKAIRQVDKVVQDVVKAVGYAPDKIAIEFTRSLENNPQRTVSRQRQLQAAYKNIPREIMKSGLMAELGSVADSKKVLSDKLYLYFTQMGKDMYEDKTINIDNLPNYDIDHILPQAFIKDDSIDNRVLISKEENARKSNRVPLKFFGAKRMGFWKDLLNNGLISNRKFQNLTTDPEKISKYSAKGFIHRQLVETSQVIRLVANILGNEYSQAGTTIIEVSAKMNRQLREDFHLIKNRNVNDYHHAMDAYLTAYVGDYLYLRYPKLRPYFVYGDFKKAEDQDLNIRNFNFLHDLKDNESLDKIVDSETGEIVWEKHGSVKQLKKVYHYKFMLVSQEVYTRQDALFNQTIYPASDADKRKLIPIKNSKPVDVYGGYSGNIDAYMAIVRVHGKKEDNYKVVGIPMRAVTKLKKAEKEGHDSYLNAVHEVLKPQFTKKKKNRKTGEITETVDEFDVLLGKVYYRQLIVDGNKKFMLGSSSYQYNAKQLVLSDKAMQVLSKNGKVKSQDENQNLIDVYDEILEKVDQYFELYDQRHYRESLHKGRGIFVNLPLSNQYDGSKLTSYGKYETIDAILNGLHANATMSNLRYLGISSPFGKMQASNGLTIDPDSIICYQSPTGLFERQIKLSDL
>NZ_CP047121.1|WP_004466554.1|2459592_2459988_-|pyridoxamine-5'-phosphate-oxidase-family-protein
MANLSEEMKNMINEQLPFLATADENGVPKVGPKGSLQVMDDSHLLYYEHTFRHAYHNLKQNAYAAVAVADRSAQKGFRFEGKSHIHEGDSLAKKILPPKIFDRFPRAAVVVIDVEHIYQLDNNLDAGTRLA
>NZ_CP047121.1|WP_035444663.1|2460408_2461527_-|iron-containing-alcohol-dehydrogenase-family-protein
MIISRIGPQQYLSNLDAYDYLPKYIKNNDYTRVLFLHGVKSLNAAKPYLPAWDPEVTVHDIYFNGECSPEEIARIRGLVRDNDIQLIIGLGGGKVLDTAKSAAHYEHRPIVTIPTLASNCAPWSCLSVRYKENGEHIDHEVYDNATNLLLINPKVILNSPIDYFVAGIGDTLAKFYESELIFKDLEEKGPLNVALTISKQMSENCKDVLLKNSVAAVQDMKAGKLTDEWLSVVETIICTAGTVGGWGDEYSRSTGSHSVHDALTTFDETKPLLHGERVAYGNLVQLSLEKHFEEIQILLKLYGTLKLPRSLKELSFKNPSDKLVHAIAAETVTPEKAIHLLPFKVTEPDVAQAISQLEEITDKYKASVAVGN
>NZ_CP047121.1|WP_159298796.1|2461868_2462663_-|DUF1835-domain-containing-protein
MPVDVTFDDTFSGLLRYYYRKKHVKQRILTLPLSLDFGNIKTANIVRTRASFLEELSRNTHGYSVKEEIQKIRDNLSFLEVLIESGTSFRIWWTNKAADYCGFIWLCDRLKTVENEVEQIKVPTLFPRENQTLLEINEGLSGLSCDLIDEFKLFERQQKLSASIRRDYSYMWQELQEENQPIRVLINDHLLSQPVTFYDKFIYQQTSKTDFTELDRLLGKIVLHYGVGILEGWYWYRIEKLIDEEKLEAKQSKIPMKQLIRLRK
>NZ_CP047121.1|WP_004466550.1|2462785_2463127_+|hypothetical-protein
MQNKKHLTGPQIVGWIIWWFVTILILLVLVAIMVFNPHSWITNTVAVIFGTLYVIQQIIMIFCLKRLHRNDNYAWPIVAIVVGVLGSILYIIPGIWALMINNSAQNRHRNTIN
>NZ_CP047121.1|WP_004466548.1|2463221_2463434_-|hypothetical-protein
MGLILFLMFGWIYLLFRMGFSLLRFFGGFIGLILIFFILTKVIIWGFWLTGVAALAFFGWLAYRFISSRV
>NZ_CP047121.1|WP_035444662.1|2463469_2464246_-|DUF1828-domain-containing-protein
MITIDNLEKSVNDFNKKSITFSNTDQNYIRIDTPFFDRHNDAIILYASEVEGNVRLTDAGYILDDLESDGMFITRSRKRMTILKEQLKSYSVKFNEVTHELYVDANISDYPVKQNLLIQAMLFVNDMFMLSKERVSKLFVNDVAEFLTENDIRAYDGPNLIGISGMVLHYEFSIAGIRDIPDKLIRVLNTPHNEYYAKTVAMDVRQTVPVVKRKTDFYAFVNDEEAPVDDTIVNLFNSESITTVPFSKRNEFVKRLAE

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NZ_CP047121_2	2.8\|2452596\|30\|NZ_CP047121\|CRT,CRISPRCasFinder,PILER-CR	2452596-2452625	30	NZ_CP047121.1	632638-632667	1	0.967

1. spacer 2.8|2452596|30|NZ_CP047121|CRT,CRISPRCasFinder,PILER-CR matches to position: 632638-632667, mismatch: 1, identity: 0.967

aattgaatcgcacgcgcaatcgccttatga	CRISPR spacer
aattgaatcgcacgcccaatcgccttatga	Protospacer
*************** **************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP047121_2	2.4\|2452332\|30\|NZ_CP047121\|CRT,CRISPRCasFinder,PILER-CR	2452332-2452361	30	MK450538	Staphylococcus phage vB_SpsS_QT1, complete genome	27745-27774	5	0.833
NZ_CP047121_2	2.4\|2452332\|30\|NZ_CP047121\|CRT,CRISPRCasFinder,PILER-CR	2452332-2452361	30	AY855346	Clostridium difficile bacteriophage phi CD119, complete genome	51735-51764	5	0.833
NZ_CP047121_2	2.4\|2452332\|30\|NZ_CP047121\|CRT,CRISPRCasFinder,PILER-CR	2452332-2452361	30	NC_007917	Clostridium phage phi CD119, complete genome	51735-51764	5	0.833
NZ_CP047121_2	2.4\|2452332\|30\|NZ_CP047121\|CRT,CRISPRCasFinder,PILER-CR	2452332-2452361	30	NC_028996	Clostridium phage phiCDHM19, complete genome	52947-52976	5	0.833
NZ_CP047121_2	2.1\|2452138\|26\|NZ_CP047121\|CRT	2452138-2452163	26	CP006880	Rhizobium gallicum bv. gallicum R602 plasmid pRgalR602c, complete sequence	5599-5624	6	0.769
NZ_CP047121_2	2.4\|2452332\|30\|NZ_CP047121\|CRT,CRISPRCasFinder,PILER-CR	2452332-2452361	30	MK448761	Streptococcus phage Javan445, complete genome	16573-16602	6	0.8
NZ_CP047121_2	2.4\|2452332\|30\|NZ_CP047121\|CRT,CRISPRCasFinder,PILER-CR	2452332-2452361	30	MK448760	Streptococcus phage Javan443, complete genome	16573-16602	6	0.8
NZ_CP047121_2	2.4\|2452332\|30\|NZ_CP047121\|CRT,CRISPRCasFinder,PILER-CR	2452332-2452361	30	NZ_KP738729	Aeromonas sp. Ne-1 plasmid pNe-1, complete sequence	78361-78390	6	0.8
NZ_CP047121_2	2.4\|2452332\|30\|NZ_CP047121\|CRT,CRISPRCasFinder,PILER-CR	2452332-2452361	30	NC_029016	Enterococcus phage vB_EfaS_IME198, complete genome	479-508	6	0.8
NZ_CP047121_2	2.4\|2452332\|30\|NZ_CP047121\|CRT,CRISPRCasFinder,PILER-CR	2452332-2452361	30	NZ_CP031070	Bacillus sp. JAS24-2 plasmid pl278, complete sequence	199127-199156	6	0.8
NZ_CP047121_2	2.4\|2452332\|30\|NZ_CP047121\|CRT,CRISPRCasFinder,PILER-CR	2452332-2452361	30	NZ_CP013700	Clostridium botulinum strain AM1195 plasmid pRSJ11_1, complete sequence	203205-203234	6	0.8
NZ_CP047121_2	2.11\|2452794\|30\|NZ_CP047121\|CRT,CRISPRCasFinder,PILER-CR	2452794-2452823	30	GQ451696	Leuconostoc phage 1-A4, complete genome	25743-25772	6	0.8
NZ_CP047121_2	2.12\|2452860\|30\|NZ_CP047121\|CRT,CRISPRCasFinder,PILER-CR	2452860-2452889	30	NZ_CP053657	Bacillus cereus strain CTMA_1571 plasmid p.1, complete sequence	170227-170256	6	0.8
NZ_CP047121_2	2.12\|2452860\|30\|NZ_CP047121\|CRT,CRISPRCasFinder,PILER-CR	2452860-2452889	30	LN881734	Escherichia phage slur11, complete genome	135260-135289	6	0.8
NZ_CP047121_2	2.12\|2452860\|30\|NZ_CP047121\|CRT,CRISPRCasFinder,PILER-CR	2452860-2452889	30	MG781191	Escherichia phage vB_EcoM-fHoEco02, complete genome	145992-146021	6	0.8
NZ_CP047121_2	2.12\|2452860\|30\|NZ_CP047121\|CRT,CRISPRCasFinder,PILER-CR	2452860-2452889	30	MT764206	Escherichia phage JEP6, complete genome	52411-52440	6	0.8
NZ_CP047121_2	2.12\|2452860\|30\|NZ_CP047121\|CRT,CRISPRCasFinder,PILER-CR	2452860-2452889	30	MN895437	Escherichia phage teqskov, complete genome	38251-38280	6	0.8
NZ_CP047121_2	2.12\|2452860\|30\|NZ_CP047121\|CRT,CRISPRCasFinder,PILER-CR	2452860-2452889	30	MH837626	Escherichia phage vB_vPM_PD112, complete genome	50727-50756	6	0.8
NZ_CP047121_2	2.12\|2452860\|30\|NZ_CP047121\|CRT,CRISPRCasFinder,PILER-CR	2452860-2452889	30	NC_019399	Enterobacteria phage vB_EcoM_ACG-C40, complete genome	146086-146115	6	0.8
NZ_CP047121_2	2.12\|2452860\|30\|NZ_CP047121\|CRT,CRISPRCasFinder,PILER-CR	2452860-2452889	30	KM606997	Enterobacteria phage RB7, complete genome	147844-147873	6	0.8
NZ_CP047121_2	2.12\|2452860\|30\|NZ_CP047121\|CRT,CRISPRCasFinder,PILER-CR	2452860-2452889	30	LN881736	Escherichia phage slur14, complete genome	87957-87986	6	0.8
NZ_CP047121_2	2.12\|2452860\|30\|NZ_CP047121\|CRT,CRISPRCasFinder,PILER-CR	2452860-2452889	30	KU925172	Escherichia phage PE37, complete genome	18463-18492	6	0.8
NZ_CP047121_2	2.12\|2452860\|30\|NZ_CP047121\|CRT,CRISPRCasFinder,PILER-CR	2452860-2452889	30	MH051915	Enterobacteria phage vB_EcoM_IME339, complete genome	23915-23944	6	0.8
NZ_CP047121_2	2.12\|2452860\|30\|NZ_CP047121\|CRT,CRISPRCasFinder,PILER-CR	2452860-2452889	30	LR215722	Yersinia phage fPS-2 genome assembly, chromosome: I	148520-148549	6	0.8
NZ_CP047121_2	2.12\|2452860\|30\|NZ_CP047121\|CRT,CRISPRCasFinder,PILER-CR	2452860-2452889	30	MT682713	Escherichia phage vB_EcoM_Ozark, complete genome	147117-147146	6	0.8
NZ_CP047121_2	2.12\|2452860\|30\|NZ_CP047121\|CRT,CRISPRCasFinder,PILER-CR	2452860-2452889	30	MH751506	Escherichia phage T2, complete genome	142326-142355	6	0.8
NZ_CP047121_2	2.12\|2452860\|30\|NZ_CP047121\|CRT,CRISPRCasFinder,PILER-CR	2452860-2452889	30	NC_042129	Escherichia phage slur03, complete genome	24354-24383	6	0.8
NZ_CP047121_2	2.12\|2452860\|30\|NZ_CP047121\|CRT,CRISPRCasFinder,PILER-CR	2452860-2452889	30	NC_042077	Shigella phage Sf21, complete genome	144976-145005	6	0.8
NZ_CP047121_2	2.12\|2452860\|30\|NZ_CP047121\|CRT,CRISPRCasFinder,PILER-CR	2452860-2452889	30	LN881732	Escherichia phage slur07, complete genome	17124-17153	6	0.8
NZ_CP047121_2	2.12\|2452860\|30\|NZ_CP047121\|CRT,CRISPRCasFinder,PILER-CR	2452860-2452889	30	MN508618	UNVERIFIED: Escherichia phage ES26, complete genome	86309-86338	6	0.8
NZ_CP047121_2	2.12\|2452860\|30\|NZ_CP047121\|CRT,CRISPRCasFinder,PILER-CR	2452860-2452889	30	MT884006	Escherichia phage vb_EcoM_bov9_1, complete genome	145203-145232	6	0.8
NZ_CP047121_2	2.12\|2452860\|30\|NZ_CP047121\|CRT,CRISPRCasFinder,PILER-CR	2452860-2452889	30	KM607002	Enterobacteria phage RB55, complete genome	148806-148835	6	0.8
NZ_CP047121_2	2.12\|2452860\|30\|NZ_CP047121\|CRT,CRISPRCasFinder,PILER-CR	2452860-2452889	30	KY608967	UNVERIFIED: Escherichia phage CF2, complete genome	11164-11193	6	0.8
NZ_CP047121_2	2.12\|2452860\|30\|NZ_CP047121\|CRT,CRISPRCasFinder,PILER-CR	2452860-2452889	30	MT176425	Citrobacter phage PhiZZ23, complete genome	146959-146988	6	0.8
NZ_CP047121_2	2.12\|2452860\|30\|NZ_CP047121\|CRT,CRISPRCasFinder,PILER-CR	2452860-2452889	30	NC_042039	Shigella phage Sf22, complete genome	90983-91012	6	0.8
NZ_CP047121_2	2.12\|2452860\|30\|NZ_CP047121\|CRT,CRISPRCasFinder,PILER-CR	2452860-2452889	30	MF327009	Shigella phage Sf25, complete genome	72597-72626	6	0.8
NZ_CP047121_2	2.12\|2452860\|30\|NZ_CP047121\|CRT,CRISPRCasFinder,PILER-CR	2452860-2452889	30	AP018813	Enterobacteria phage T2 DNA, complete genome	142319-142348	6	0.8
NZ_CP047121_2	2.12\|2452860\|30\|NZ_CP047121\|CRT,CRISPRCasFinder,PILER-CR	2452860-2452889	30	MN580668	Salmonella phage pSe_SNUABM_01, complete genome	151432-151461	6	0.8
NZ_CP047121_2	2.12\|2452860\|30\|NZ_CP047121\|CRT,CRISPRCasFinder,PILER-CR	2452860-2452889	30	MK373781	Escherichia phage vB_EcoM_KAW1E185, complete genome	144278-144307	6	0.8
NZ_CP047121_2	2.12\|2452860\|30\|NZ_CP047121\|CRT,CRISPRCasFinder,PILER-CR	2452860-2452889	30	NC_025829	Shigella phage pSs-1, complete genome	149674-149703	6	0.8
NZ_CP047121_2	2.12\|2452860\|30\|NZ_CP047121\|CRT,CRISPRCasFinder,PILER-CR	2452860-2452889	30	LN881737	Escherichia phage slur13, complete genome	157082-157111	6	0.8
NZ_CP047121_2	2.12\|2452860\|30\|NZ_CP047121\|CRT,CRISPRCasFinder,PILER-CR	2452860-2452889	30	LR597657	Escherichia phage T4_ev240 genome assembly, chromosome: 1	146587-146616	6	0.8
NZ_CP047121_2	2.12\|2452860\|30\|NZ_CP047121\|CRT,CRISPRCasFinder,PILER-CR	2452860-2452889	30	NC_030953	Shigella phage SHFML-11, complete genome	95676-95705	6	0.8
NZ_CP047121_2	2.12\|2452860\|30\|NZ_CP047121\|CRT,CRISPRCasFinder,PILER-CR	2452860-2452889	30	MN508614	UNVERIFIED: Escherichia phage ES12, complete genome	85958-85987	6	0.8
NZ_CP047121_2	2.12\|2452860\|30\|NZ_CP047121\|CRT,CRISPRCasFinder,PILER-CR	2452860-2452889	30	X15818	Bacteriphage T4C genes 34, 33 and 59	4036-4065	6	0.8
NZ_CP047121_2	2.12\|2452860\|30\|NZ_CP047121\|CRT,CRISPRCasFinder,PILER-CR	2452860-2452889	30	KJ477684	Enterobacteria phage T4 strain wild, complete genome	148843-148872	6	0.8
NZ_CP047121_2	2.12\|2452860\|30\|NZ_CP047121\|CRT,CRISPRCasFinder,PILER-CR	2452860-2452889	30	MG781190	Escherichia phage vB_EcoM-fFiEco06, complete genome	146001-146030	6	0.8
NZ_CP047121_2	2.12\|2452860\|30\|NZ_CP047121\|CRT,CRISPRCasFinder,PILER-CR	2452860-2452889	30	LR215723	Yersinia phage fPS-90 genome assembly, chromosome: I	146656-146685	6	0.8
NZ_CP047121_2	2.12\|2452860\|30\|NZ_CP047121\|CRT,CRISPRCasFinder,PILER-CR	2452860-2452889	30	KM606996	Enterobacteria phage RB6, complete genome	147843-147872	6	0.8
NZ_CP047121_2	2.12\|2452860\|30\|NZ_CP047121\|CRT,CRISPRCasFinder,PILER-CR	2452860-2452889	30	AP018932	Escherichia phage KIT03 DNA, complete sequence	145807-145836	6	0.8
NZ_CP047121_2	2.12\|2452860\|30\|NZ_CP047121\|CRT,CRISPRCasFinder,PILER-CR	2452860-2452889	30	NC_025448	Enterobacteria phage RB27, complete genome	144409-144438	6	0.8
NZ_CP047121_2	2.12\|2452860\|30\|NZ_CP047121\|CRT,CRISPRCasFinder,PILER-CR	2452860-2452889	30	KJ668714	Escherichia phage e11/2, complete genome	147432-147461	6	0.8
NZ_CP047121_2	2.12\|2452860\|30\|NZ_CP047121\|CRT,CRISPRCasFinder,PILER-CR	2452860-2452889	30	HM137666	Enterobacteria phage T4T, complete genome	148841-148870	6	0.8
NZ_CP047121_2	2.12\|2452860\|30\|NZ_CP047121\|CRT,CRISPRCasFinder,PILER-CR	2452860-2452889	30	MN895438	Escherichia phage teqdroes, complete genome	75226-75255	6	0.8
NZ_CP047121_2	2.12\|2452860\|30\|NZ_CP047121\|CRT,CRISPRCasFinder,PILER-CR	2452860-2452889	30	KP869105	Escherichia coli O157 typing phage 7, partial genome	164204-164233	6	0.8
NZ_CP047121_2	2.12\|2452860\|30\|NZ_CP047121\|CRT,CRISPRCasFinder,PILER-CR	2452860-2452889	30	MF158046	Shigella phage Sf23, complete genome	68414-68443	6	0.8
NZ_CP047121_2	2.12\|2452860\|30\|NZ_CP047121\|CRT,CRISPRCasFinder,PILER-CR	2452860-2452889	30	MT884007	Escherichia phage vb_EcoM_bov10K1, complete genome	145204-145233	6	0.8
NZ_CP047121_2	2.12\|2452860\|30\|NZ_CP047121\|CRT,CRISPRCasFinder,PILER-CR	2452860-2452889	30	NC_000866	Enterobacteria phage T4, complete genome	148828-148857	6	0.8
NZ_CP047121_2	2.12\|2452860\|30\|NZ_CP047121\|CRT,CRISPRCasFinder,PILER-CR	2452860-2452889	30	MT682714	Escherichia phage vB_EcoM_Lutter, complete genome	148453-148482	6	0.8
NZ_CP047121_2	2.12\|2452860\|30\|NZ_CP047121\|CRT,CRISPRCasFinder,PILER-CR	2452860-2452889	30	AY310907	Enterobacteria phage T2 Gp59 gene, partial cds; Gp32, Frd.3, Frd.2, Frd.1, dihydrofolate reductase, dTMP thymidylate synthase, and NrdA.2 genes, complete cds; and NrdA.1 gene, partial cds	266-295	6	0.8
NZ_CP047121_2	2.12\|2452860\|30\|NZ_CP047121\|CRT,CRISPRCasFinder,PILER-CR	2452860-2452889	30	LR746311	Shigella phage vB_SsoM_113 genome assembly, chromosome: 1	90591-90620	6	0.8
NZ_CP047121_2	2.12\|2452860\|30\|NZ_CP047121\|CRT,CRISPRCasFinder,PILER-CR	2452860-2452889	30	MK962750	Shigella phage CM8, complete genome	146268-146297	6	0.8
NZ_CP047121_2	2.12\|2452860\|30\|NZ_CP047121\|CRT,CRISPRCasFinder,PILER-CR	2452860-2452889	30	MH553563	Enterobacteria phage RB18, complete genome	145618-145647	6	0.8
NZ_CP047121_2	2.12\|2452860\|30\|NZ_CP047121\|CRT,CRISPRCasFinder,PILER-CR	2452860-2452889	30	MN895436	Escherichia phage teqsoen, complete genome	130028-130057	6	0.8
NZ_CP047121_2	2.12\|2452860\|30\|NZ_CP047121\|CRT,CRISPRCasFinder,PILER-CR	2452860-2452889	30	KM606995	Enterobacteria phage RB5, complete genome	147843-147872	6	0.8
NZ_CP047121_2	2.12\|2452860\|30\|NZ_CP047121\|CRT,CRISPRCasFinder,PILER-CR	2452860-2452889	30	MT682710	Escherichia phage vB_EcoM_FT, complete genome	87826-87855	6	0.8
NZ_CP047121_2	2.12\|2452860\|30\|NZ_CP047121\|CRT,CRISPRCasFinder,PILER-CR	2452860-2452889	30	MG775043	Citrobacter phage vB_CroM_CrRp10, complete genome	122790-122819	6	0.8
NZ_CP047121_2	2.12\|2452860\|30\|NZ_CP047121\|CRT,CRISPRCasFinder,PILER-CR	2452860-2452889	30	MN781580	Shigella virus KRT47, complete genome	145942-145971	6	0.8
NZ_CP047121_2	2.12\|2452860\|30\|NZ_CP047121\|CRT,CRISPRCasFinder,PILER-CR	2452860-2452889	30	LN881726	Escherichia phage slur02, complete genome	50030-50059	6	0.8
NZ_CP047121_2	2.12\|2452860\|30\|NZ_CP047121\|CRT,CRISPRCasFinder,PILER-CR	2452860-2452889	30	NC_042078	Shigella phage Sf24, complete genome	71707-71736	6	0.8
NZ_CP047121_2	2.12\|2452860\|30\|NZ_CP047121\|CRT,CRISPRCasFinder,PILER-CR	2452860-2452889	30	MH992121	UNVERIFIED: Escherichia phage MLF4, partial genome	11548-11577	6	0.8
NZ_CP047121_2	2.12\|2452860\|30\|NZ_CP047121\|CRT,CRISPRCasFinder,PILER-CR	2452860-2452889	30	MK373779	Escherichia phage vB_EcoM_G9062, complete genome	147863-147892	6	0.8
NZ_CP047121_2	2.12\|2452860\|30\|NZ_CP047121\|CRT,CRISPRCasFinder,PILER-CR	2452860-2452889	30	KR269718	Escherichia phage HY03, complete genome	145416-145445	6	0.8
NZ_CP047121_2	2.12\|2452860\|30\|NZ_CP047121\|CRT,CRISPRCasFinder,PILER-CR	2452860-2452889	30	MT179807	Escherichia phage vB_EcoM_IME537, complete genome	55553-55582	6	0.8
NZ_CP047121_2	2.12\|2452860\|30\|NZ_CP047121\|CRT,CRISPRCasFinder,PILER-CR	2452860-2452889	30	KX828711	Shigella phage SH7, complete genome	143841-143870	6	0.8
NZ_CP047121_2	2.12\|2452860\|30\|NZ_CP047121\|CRT,CRISPRCasFinder,PILER-CR	2452860-2452889	30	KJ477686	Enterobacteria phage T4 strain GT7, complete genome	148840-148869	6	0.8
NZ_CP047121_2	2.12\|2452860\|30\|NZ_CP047121\|CRT,CRISPRCasFinder,PILER-CR	2452860-2452889	30	MT446387	UNVERIFIED: Escherichia virus TH09, complete genome	10485-10514	6	0.8
NZ_CP047121_2	2.12\|2452860\|30\|NZ_CP047121\|CRT,CRISPRCasFinder,PILER-CR	2452860-2452889	30	MK327944	Escherichia phage vB_EcoM_G2540-3, complete genome	147513-147542	6	0.8
NZ_CP047121_2	2.12\|2452860\|30\|NZ_CP047121\|CRT,CRISPRCasFinder,PILER-CR	2452860-2452889	30	FJ839692	Enterobacteria phage RB14, complete genome	144412-144441	6	0.8
NZ_CP047121_2	2.12\|2452860\|30\|NZ_CP047121\|CRT,CRISPRCasFinder,PILER-CR	2452860-2452889	30	KX452694	UNVERIFIED: Escherichia phage KPN1 genomic sequence	137957-137986	6	0.8
NZ_CP047121_2	2.12\|2452860\|30\|NZ_CP047121\|CRT,CRISPRCasFinder,PILER-CR	2452860-2452889	30	KM606994	Enterobacteria phage RB3, complete genome	147851-147880	6	0.8
NZ_CP047121_2	2.12\|2452860\|30\|NZ_CP047121\|CRT,CRISPRCasFinder,PILER-CR	2452860-2452889	30	MK977694	Escherichia phage vB_EcoM-Sa45lw, complete genome	146350-146379	6	0.8
NZ_CP047121_2	2.12\|2452860\|30\|NZ_CP047121\|CRT,CRISPRCasFinder,PILER-CR	2452860-2452889	30	KX130862	Shigella phage SHFML-26, complete genome	45744-45773	6	0.8
NZ_CP047121_2	2.12\|2452860\|30\|NZ_CP047121\|CRT,CRISPRCasFinder,PILER-CR	2452860-2452889	30	KU867876	Escherichia phage vB_EcoM-UFV13, complete genome	144459-144488	6	0.8
NZ_CP047121_2	2.12\|2452860\|30\|NZ_CP047121\|CRT,CRISPRCasFinder,PILER-CR	2452860-2452889	30	MK327936	Escherichia phage vB_EcoM_G2540, complete genome	148401-148430	6	0.8
NZ_CP047121_2	2.12\|2452860\|30\|NZ_CP047121\|CRT,CRISPRCasFinder,PILER-CR	2452860-2452889	30	NC_031030	Escherichia phage UFV-AREG1, complete genome	146418-146447	6	0.8
NZ_CP047121_2	2.12\|2452860\|30\|NZ_CP047121\|CRT,CRISPRCasFinder,PILER-CR	2452860-2452889	30	FJ839693	Enterobacteria phage RB51, complete genome	147607-147636	6	0.8
NZ_CP047121_2	2.12\|2452860\|30\|NZ_CP047121\|CRT,CRISPRCasFinder,PILER-CR	2452860-2452889	30	KM607004	Enterobacteria phage RB68, complete genome	147614-147643	6	0.8
NZ_CP047121_2	2.12\|2452860\|30\|NZ_CP047121\|CRT,CRISPRCasFinder,PILER-CR	2452860-2452889	30	MN994497	Phage NBEco003, complete genome	20763-20792	6	0.8
NZ_CP047121_2	2.12\|2452860\|30\|NZ_CP047121\|CRT,CRISPRCasFinder,PILER-CR	2452860-2452889	30	MK962755	Shigella phage JK38, complete genome	145641-145670	6	0.8
NZ_CP047121_2	2.12\|2452860\|30\|NZ_CP047121\|CRT,CRISPRCasFinder,PILER-CR	2452860-2452889	30	MH243439	Escherichia phage vB_EcoM_NBG2, complete genome	144650-144679	6	0.8
NZ_CP047121_2	2.12\|2452860\|30\|NZ_CP047121\|CRT,CRISPRCasFinder,PILER-CR	2452860-2452889	30	MF001360	Escherichia phage ECO4, partial genome	159063-159092	6	0.8
NZ_CP047121_2	2.12\|2452860\|30\|NZ_CP047121\|CRT,CRISPRCasFinder,PILER-CR	2452860-2452889	30	KJ477685	Enterobacteria phage T4 strain 147, complete genome	146737-146766	6	0.8
NZ_CP047121_2	2.12\|2452860\|30\|NZ_CP047121\|CRT,CRISPRCasFinder,PILER-CR	2452860-2452889	30	KT184311	Enterobacteria phage GiZh, complete genome	29083-29112	6	0.8
NZ_CP047121_2	2.12\|2452860\|30\|NZ_CP047121\|CRT,CRISPRCasFinder,PILER-CR	2452860-2452889	30	MK886800	Escherichia phage EcNP1, complete genome	124340-124369	6	0.8
NZ_CP047121_2	2.12\|2452860\|30\|NZ_CP047121\|CRT,CRISPRCasFinder,PILER-CR	2452860-2452889	30	LR215724	Yersinia phage fPS-65 genome assembly, chromosome: I	146631-146660	6	0.8
NZ_CP047121_2	2.12\|2452860\|30\|NZ_CP047121\|CRT,CRISPRCasFinder,PILER-CR	2452860-2452889	30	LN881733	Escherichia phage slur08, complete genome	21601-21630	6	0.8
NZ_CP047121_2	2.12\|2452860\|30\|NZ_CP047121\|CRT,CRISPRCasFinder,PILER-CR	2452860-2452889	30	AP011113	Enterobacteria phage AR1 DNA, complete genome	146691-146720	6	0.8
NZ_CP047121_2	2.12\|2452860\|30\|NZ_CP047121\|CRT,CRISPRCasFinder,PILER-CR	2452860-2452889	30	MK373786	Escherichia phage vB_EcoM_R5505, complete genome	146415-146444	6	0.8
NZ_CP047121_2	2.12\|2452860\|30\|NZ_CP047121\|CRT,CRISPRCasFinder,PILER-CR	2452860-2452889	30	LC348380	Escherichia phage T2 DNA, complete sequence	142329-142358	6	0.8
NZ_CP047121_2	2.12\|2452860\|30\|NZ_CP047121\|CRT,CRISPRCasFinder,PILER-CR	2452860-2452889	30	MT176424	Citrobacter phage PhiZZ6, complete genome	145395-145424	6	0.8
NZ_CP047121_2	2.12\|2452860\|30\|NZ_CP047121\|CRT,CRISPRCasFinder,PILER-CR	2452860-2452889	30	NC_027404	Yersinia phage PST, complete genome	146986-147015	6	0.8
NZ_CP047121_2	2.12\|2452860\|30\|NZ_CP047121\|CRT,CRISPRCasFinder,PILER-CR	2452860-2452889	30	NC_008515	Bacteriophage RB32, complete genome	144951-144980	6	0.8
NZ_CP047121_2	2.12\|2452860\|30\|NZ_CP047121\|CRT,CRISPRCasFinder,PILER-CR	2452860-2452889	30	KT184312	Enterobacteria phage Kha5h, complete genome	3632-3661	6	0.8
NZ_CP047121_2	2.12\|2452860\|30\|NZ_CP047121\|CRT,CRISPRCasFinder,PILER-CR	2452860-2452889	30	HE956711	Yersinia phage phiD1 complete genome	146699-146728	6	0.8
NZ_CP047121_2	2.12\|2452860\|30\|NZ_CP047121\|CRT,CRISPRCasFinder,PILER-CR	2452860-2452889	30	MG867727	Escherichia phage vB_EcoM-G28, complete genome	149116-149145	6	0.8
NZ_CP047121_2	2.12\|2452860\|30\|NZ_CP047121\|CRT,CRISPRCasFinder,PILER-CR	2452860-2452889	30	KF925357	Escherichia phage HY01, complete genome	146558-146587	6	0.8
NZ_CP047121_2	2.12\|2452860\|30\|NZ_CP047121\|CRT,CRISPRCasFinder,PILER-CR	2452860-2452889	30	KR233165	Escherichia phage PEC04, complete genome	90260-90289	6	0.8
NZ_CP047121_2	2.12\|2452860\|30\|NZ_CP047121\|CRT,CRISPRCasFinder,PILER-CR	2452860-2452889	30	NC_015457	Shigella phage Shfl2, complete genome	144077-144106	6	0.8
NZ_CP047121_2	2.12\|2452860\|30\|NZ_CP047121\|CRT,CRISPRCasFinder,PILER-CR	2452860-2452889	30	KM607001	Enterobacteria phage RB33, complete genome	145069-145098	6	0.8
NZ_CP047121_2	2.12\|2452860\|30\|NZ_CP047121\|CRT,CRISPRCasFinder,PILER-CR	2452860-2452889	30	LC348379	Escherichia phage PP01 DNA, complete sequence	146881-146910	6	0.8
NZ_CP047121_2	2.12\|2452860\|30\|NZ_CP047121\|CRT,CRISPRCasFinder,PILER-CR	2452860-2452889	30	MT968995	Escherichia phage vB_EcoM_WL-3, complete genome	144643-144672	6	0.8
NZ_CP047121_2	2.12\|2452860\|30\|NZ_CP047121\|CRT,CRISPRCasFinder,PILER-CR	2452860-2452889	30	MK327928	Escherichia phage vB_EcoM_G2133, complete genome	147979-148008	6	0.8
NZ_CP047121_2	2.12\|2452860\|30\|NZ_CP047121\|CRT,CRISPRCasFinder,PILER-CR	2452860-2452889	30	MT176426	Serratia phage PhiZZ30, complete genome	147274-147303	6	0.8
NZ_CP047121_2	2.12\|2452860\|30\|NZ_CP047121\|CRT,CRISPRCasFinder,PILER-CR	2452860-2452889	30	KX452698	UNVERIFIED: Shigella phage KPN5 genomic sequence	148899-148928	6	0.8
NZ_CP047121_2	2.12\|2452860\|30\|NZ_CP047121\|CRT,CRISPRCasFinder,PILER-CR	2452860-2452889	30	NC_031085	Shigella phage SHBML-50-1, complete genome	147339-147368	6	0.8
NZ_CP047121_2	2.12\|2452860\|30\|NZ_CP047121\|CRT,CRISPRCasFinder,PILER-CR	2452860-2452889	30	KT184308	Enterobacteria phage Aplg8, complete genome	91907-91936	6	0.8
NZ_CP047121_2	2.12\|2452860\|30\|NZ_CP047121\|CRT,CRISPRCasFinder,PILER-CR	2452860-2452889	30	LR597660	Escherichia phage T4_ev151 genome assembly, chromosome: 1	146257-146286	6	0.8
NZ_CP047121_2	2.12\|2452860\|30\|NZ_CP047121\|CRT,CRISPRCasFinder,PILER-CR	2452860-2452889	30	MN895434	Escherichia phage teqhad, complete genome	152137-152166	6	0.8
NZ_CP047121_2	2.12\|2452860\|30\|NZ_CP047121\|CRT,CRISPRCasFinder,PILER-CR	2452860-2452889	30	MH992510	Escherichia phage vB_EcoM_DalCa, complete genome	144861-144890	6	0.8
NZ_CP047121_2	2.12\|2452860\|30\|NZ_CP047121\|CRT,CRISPRCasFinder,PILER-CR	2452860-2452889	30	KM607003	Enterobacteria phage RB59, complete genome	148820-148849	6	0.8
NZ_CP047121_2	2.12\|2452860\|30\|NZ_CP047121\|CRT,CRISPRCasFinder,PILER-CR	2452860-2452889	30	LN881729	Escherichia phage slur04, complete genome	131714-131743	6	0.8
NZ_CP047121_2	2.12\|2452860\|30\|NZ_CP047121\|CRT,CRISPRCasFinder,PILER-CR	2452860-2452889	30	HM997020	Escherichia phage wV7, complete genome	145511-145540	6	0.8
NZ_CP047121_2	2.12\|2452860\|30\|NZ_CP047121\|CRT,CRISPRCasFinder,PILER-CR	2452860-2452889	30	MT932213	Escherichia phage VEc74, complete genome	145105-145134	6	0.8
NZ_CP047121_2	2.12\|2452860\|30\|NZ_CP047121\|CRT,CRISPRCasFinder,PILER-CR	2452860-2452889	30	JN202312	Enterobacteria phage ime09, complete genome	144564-144593	6	0.8
NZ_CP047121_2	2.12\|2452860\|30\|NZ_CP047121\|CRT,CRISPRCasFinder,PILER-CR	2452860-2452889	30	KM606999	Enterobacteria phage RB10, complete genome	147850-147879	6	0.8
NZ_CP047121_2	2.12\|2452860\|30\|NZ_CP047121\|CRT,CRISPRCasFinder,PILER-CR	2452860-2452889	30	KM606998	Enterobacteria phage RB9, complete genome	147844-147873	6	0.8
NZ_CP047121_2	2.2\|2452200\|30\|NZ_CP047121\|CRT,CRISPRCasFinder	2452200-2452229	30	MH884508	Bacillus phage vB_BcoS-136, complete genome	102479-102508	7	0.767
NZ_CP047121_2	2.4\|2452332\|30\|NZ_CP047121\|CRT,CRISPRCasFinder,PILER-CR	2452332-2452361	30	KY065457	Streptococcus phage IPP16, complete genome	3783-3812	7	0.767
NZ_CP047121_2	2.4\|2452332\|30\|NZ_CP047121\|CRT,CRISPRCasFinder,PILER-CR	2452332-2452361	30	MN855969	Siphoviridae sp. isolate 51, complete genome	3115-3144	7	0.767
NZ_CP047121_2	2.7\|2452530\|30\|NZ_CP047121\|CRT,CRISPRCasFinder,PILER-CR	2452530-2452559	30	NZ_KU306397	Corynebacterium glutamicum strain DSM 1412 plasmid pBL90, complete sequence	11330-11359	7	0.767
NZ_CP047121_2	2.11\|2452794\|30\|NZ_CP047121\|CRT,CRISPRCasFinder,PILER-CR	2452794-2452823	30	MK308676	Vibrio phage vB_VmeM-Yong MS31, complete genome	381-410	7	0.767
NZ_CP047121_2	2.11\|2452794\|30\|NZ_CP047121\|CRT,CRISPRCasFinder,PILER-CR	2452794-2452823	30	MK308675	Vibrio phage vB_VmeM-Yong XC32, complete genome	381-410	7	0.767
NZ_CP047121_2	2.11\|2452794\|30\|NZ_CP047121\|CRT,CRISPRCasFinder,PILER-CR	2452794-2452823	30	MK308677	Vibrio phage vB_VmeM-Yong MS32, complete genome	381-410	7	0.767
NZ_CP047121_2	2.11\|2452794\|30\|NZ_CP047121\|CRT,CRISPRCasFinder,PILER-CR	2452794-2452823	30	MK308674	Vibrio phage vB_VmeM-Yong XC31, complete genome	381-410	7	0.767
NZ_CP047121_2	2.11\|2452794\|30\|NZ_CP047121\|CRT,CRISPRCasFinder,PILER-CR	2452794-2452823	30	NZ_AP017383	Moraxella osloensis strain KMC41 plasmid pMOSL2, complete sequence	14013-14042	7	0.767
NZ_CP047121_2	2.12\|2452860\|30\|NZ_CP047121\|CRT,CRISPRCasFinder,PILER-CR	2452860-2452889	30	NZ_CP020439	Streptococcus equinus strain FDAARGOS_251 plasmid unamed1 sequence	164729-164758	7	0.767
NZ_CP047121_2	2.12\|2452860\|30\|NZ_CP047121\|CRT,CRISPRCasFinder,PILER-CR	2452860-2452889	30	MN480762	Streptococcus salivarius strain NU10 plasmid pSsal-NU10, complete sequence	50246-50275	7	0.767
NZ_CP047121_2	2.12\|2452860\|30\|NZ_CP047121\|CRT,CRISPRCasFinder,PILER-CR	2452860-2452889	30	NZ_CP018938	Bacteroides fragilis strain Q1F2 plasmid Q1F2-p1, complete sequence	33709-33738	7	0.767
NZ_CP047121_2	2.12\|2452860\|30\|NZ_CP047121\|CRT,CRISPRCasFinder,PILER-CR	2452860-2452889	30	NZ_KT897280	Clostridium botulinum strain FI1111E1 plasmid pFI1111E1, complete sequence	77052-77081	7	0.767
NZ_CP047121_2	2.12\|2452860\|30\|NZ_CP047121\|CRT,CRISPRCasFinder,PILER-CR	2452860-2452889	30	NZ_KT897275	Clostridium botulinum strain IFR 12/29 plasmid p12/29, complete sequence	73408-73437	7	0.767
NZ_CP047121_2	2.12\|2452860\|30\|NZ_CP047121\|CRT,CRISPRCasFinder,PILER-CR	2452860-2452889	30	NZ_KT897278	Clostridium botulinum strain FWSKR40E1 plasmid pFWSKR40E1, complete sequence	75916-75945	7	0.767
NZ_CP047121_2	2.12\|2452860\|30\|NZ_CP047121\|CRT,CRISPRCasFinder,PILER-CR	2452860-2452889	30	NZ_KT897279	Clostridium botulinum strain SWKR38E2 plasmid pSWKR38E2, complete sequence	77052-77081	7	0.767
NZ_CP047121_2	2.12\|2452860\|30\|NZ_CP047121\|CRT,CRISPRCasFinder,PILER-CR	2452860-2452889	30	KX171213	Staphylococcus phage vB_SscM-2, complete genome	113519-113548	7	0.767
NZ_CP047121_2	2.12\|2452860\|30\|NZ_CP047121\|CRT,CRISPRCasFinder,PILER-CR	2452860-2452889	30	NC_047767	Staphylococcus phage vB_SscM-1, complete genome	113518-113547	7	0.767
NZ_CP047121_2	2.4\|2452332\|30\|NZ_CP047121\|CRT,CRISPRCasFinder,PILER-CR	2452332-2452361	30	NC_048652	Bacillus phage vB_BsuM-Goe3, complete genome	16028-16057	8	0.733
NZ_CP047121_2	2.4\|2452332\|30\|NZ_CP047121\|CRT,CRISPRCasFinder,PILER-CR	2452332-2452361	30	MN241318	Enterococcus phage PEf771, complete genome	122595-122624	8	0.733
NZ_CP047121_2	2.4\|2452332\|30\|NZ_CP047121\|CRT,CRISPRCasFinder,PILER-CR	2452332-2452361	30	MN043730	Bacillus phage vB_BveM-Goe7, complete genome	16229-16258	8	0.733
NZ_CP047121_2	2.4\|2452332\|30\|NZ_CP047121\|CRT,CRISPRCasFinder,PILER-CR	2452332-2452361	30	NZ_CP028373	Campylobacter jejuni subsp. jejuni strain huA17 plasmid unnamed1, complete sequence	96378-96407	8	0.733
NZ_CP047121_2	2.4\|2452332\|30\|NZ_CP047121\|CRT,CRISPRCasFinder,PILER-CR	2452332-2452361	30	NZ_CP018901	Campylobacter coli strain YH502 plasmid pCOS502, complete sequence	80329-80358	8	0.733
NZ_CP047121_2	2.4\|2452332\|30\|NZ_CP047121\|CRT,CRISPRCasFinder,PILER-CR	2452332-2452361	30	NZ_CP040614	Campylobacter sp. CFSAN093246 plasmid unnamed, complete sequence	59066-59095	8	0.733
NZ_CP047121_2	2.4\|2452332\|30\|NZ_CP047121\|CRT,CRISPRCasFinder,PILER-CR	2452332-2452361	30	NZ_CP014745	Campylobacter jejuni strain OD267 plasmid pCJDM67 L, complete sequence	19769-19798	8	0.733
NZ_CP047121_2	2.4\|2452332\|30\|NZ_CP047121\|CRT,CRISPRCasFinder,PILER-CR	2452332-2452361	30	NZ_CP017026	Campylobacter coli plasmid pCC14983A-1, complete sequence	43716-43745	8	0.733
NZ_CP047121_2	2.4\|2452332\|30\|NZ_CP047121\|CRT,CRISPRCasFinder,PILER-CR	2452332-2452361	30	NZ_CP014345	Campylobacter jejuni strain RM3194 plasmid unnamed, complete sequence	77213-77242	8	0.733
NZ_CP047121_2	2.4\|2452332\|30\|NZ_CP047121\|CRT,CRISPRCasFinder,PILER-CR	2452332-2452361	30	NZ_CP014743	Campylobacter jejuni strain WP2202 plasmid pCJDM202, complete sequence	18582-18611	8	0.733
NZ_CP047121_2	2.4\|2452332\|30\|NZ_CP047121\|CRT,CRISPRCasFinder,PILER-CR	2452332-2452361	30	NZ_CP044166	Campylobacter coli strain AR-0416 plasmid pAR-0416	95695-95724	8	0.733
NZ_CP047121_2	2.4\|2452332\|30\|NZ_CP047121\|CRT,CRISPRCasFinder,PILER-CR	2452332-2452361	30	NZ_CP017417	Campylobacter jejuni strain MTVDSCj13 plasmid pMTVDSCj13-2, complete sequence	50011-50040	8	0.733
NZ_CP047121_2	2.4\|2452332\|30\|NZ_CP047121\|CRT,CRISPRCasFinder,PILER-CR	2452332-2452361	30	NZ_CP025282	Campylobacter coli strain YH503 plasmid pCOS503, complete sequence	63200-63229	8	0.733
NZ_CP047121_2	2.4\|2452332\|30\|NZ_CP047121\|CRT,CRISPRCasFinder,PILER-CR	2452332-2452361	30	NZ_CP044174	Campylobacter jejuni strain AR-0412 plasmid pAR-0412, complete sequence	35882-35911	8	0.733
NZ_CP047121_2	2.4\|2452332\|30\|NZ_CP047121\|CRT,CRISPRCasFinder,PILER-CR	2452332-2452361	30	LC121104	Klebsiella phage K64-1 S2-4 gene for tail fiber protein, complete cds	1081-1110	8	0.733
NZ_CP047121_2	2.4\|2452332\|30\|NZ_CP047121\|CRT,CRISPRCasFinder,PILER-CR	2452332-2452361	30	MG029513	Staphylococcus phage phiSa2wa_st72, complete genome	4237-4266	8	0.733
NZ_CP047121_2	2.4\|2452332\|30\|NZ_CP047121\|CRT,CRISPRCasFinder,PILER-CR	2452332-2452361	30	KY056620	Staphylococcus phage P240, complete genome	30365-30394	8	0.733
NZ_CP047121_2	2.4\|2452332\|30\|NZ_CP047121\|CRT,CRISPRCasFinder,PILER-CR	2452332-2452361	30	MT366568	Staphylococcus phage R4, complete genome	28685-28714	8	0.733
NZ_CP047121_2	2.4\|2452332\|30\|NZ_CP047121\|CRT,CRISPRCasFinder,PILER-CR	2452332-2452361	30	MK801681	Staphylococcus phage SAP11, complete genome	37577-37606	8	0.733
NZ_CP047121_2	2.4\|2452332\|30\|NZ_CP047121\|CRT,CRISPRCasFinder,PILER-CR	2452332-2452361	30	MK940809	Staphylococcus phage Sa2wa_st8, complete genome	4237-4266	8	0.733
NZ_CP047121_2	2.4\|2452332\|30\|NZ_CP047121\|CRT,CRISPRCasFinder,PILER-CR	2452332-2452361	30	JQ779023	Staphylococcus phage SMSAP5, complete genome	16825-16854	8	0.733
NZ_CP047121_2	2.4\|2452332\|30\|NZ_CP047121\|CRT,CRISPRCasFinder,PILER-CR	2452332-2452361	30	EU861005	Staphylococcus phage phiSauS-IPLA35, complete genome	4187-4216	8	0.733
NZ_CP047121_2	2.4\|2452332\|30\|NZ_CP047121\|CRT,CRISPRCasFinder,PILER-CR	2452332-2452361	30	KT186243	Staphylococcus phage vB_SauS_phi2, complete genome	28905-28934	8	0.733
NZ_CP047121_2	2.4\|2452332\|30\|NZ_CP047121\|CRT,CRISPRCasFinder,PILER-CR	2452332-2452361	30	AB897757	Klebsiella phage K64-1 DNA, complete genome	337459-337488	8	0.733
NZ_CP047121_2	2.4\|2452332\|30\|NZ_CP047121\|CRT,CRISPRCasFinder,PILER-CR	2452332-2452361	30	MG029517	Staphylococcus phage phiSa2wa_st93, complete genome	4237-4266	8	0.733
NZ_CP047121_2	2.4\|2452332\|30\|NZ_CP047121\|CRT,CRISPRCasFinder,PILER-CR	2452332-2452361	30	MG029516	Staphylococcus phage phiSa2wa_st93mssa, complete genome	4237-4266	8	0.733
NZ_CP047121_2	2.4\|2452332\|30\|NZ_CP047121\|CRT,CRISPRCasFinder,PILER-CR	2452332-2452361	30	MK801680	Staphylococcus phage SAP8, complete genome	28681-28710	8	0.733
NZ_CP047121_2	2.5\|2452398\|30\|NZ_CP047121\|CRT,CRISPRCasFinder,PILER-CR	2452398-2452427	30	MN694223	Marine virus AFVG_250M234, complete genome	10475-10504	8	0.733
NZ_CP047121_2	2.7\|2452530\|30\|NZ_CP047121\|CRT,CRISPRCasFinder,PILER-CR	2452530-2452559	30	NZ_CP016452	Sinorhizobium sp. RAC02 plasmid pBSY16_1, complete sequence	1410369-1410398	8	0.733
NZ_CP047121_2	2.7\|2452530\|30\|NZ_CP047121\|CRT,CRISPRCasFinder,PILER-CR	2452530-2452559	30	NZ_AP022319	Burkholderia sp. THE68 plasmid BTHE68_p1, complete sequence	141058-141087	8	0.733
NZ_CP047121_2	2.7\|2452530\|30\|NZ_CP047121\|CRT,CRISPRCasFinder,PILER-CR	2452530-2452559	30	NZ_CP024314	Rhizobium sp. NXC24 plasmid pRspNXC24c, complete sequence	203091-203120	8	0.733
NZ_CP047121_2	2.8\|2452596\|30\|NZ_CP047121\|CRT,CRISPRCasFinder,PILER-CR	2452596-2452625	30	NZ_CP012748	Paraburkholderia caribensis MBA4 plasmid unnamed, complete sequence	1760759-1760788	8	0.733
NZ_CP047121_2	2.12\|2452860\|30\|NZ_CP047121\|CRT,CRISPRCasFinder,PILER-CR	2452860-2452889	30	NZ_CP044456	Acinetobacter indicus strain B18 plasmid pB18-1, complete sequence	117495-117524	8	0.733
NZ_CP047121_2	2.12\|2452860\|30\|NZ_CP047121\|CRT,CRISPRCasFinder,PILER-CR	2452860-2452889	30	NZ_CP039144	Acinetobacter sp. 10FS3-1 plasmid p10FS3-1-1, complete sequence	335169-335198	8	0.733
NZ_CP047121_2	2.12\|2452860\|30\|NZ_CP047121\|CRT,CRISPRCasFinder,PILER-CR	2452860-2452889	30	MN480763	Streptococcus salivarius strain YU10 plasmid pSsal-YU10, complete sequence	76126-76155	8	0.733
NZ_CP047121_2	2.11\|2452794\|30\|NZ_CP047121\|CRT,CRISPRCasFinder,PILER-CR	2452794-2452823	30	NZ_KX753679	Pasteurella multocida strain RCAD0259 plasmid pRCADGH-2, complete sequence	14139-14168	9	0.7

1. spacer 2.4|2452332|30|NZ_CP047121|CRT,CRISPRCasFinder,PILER-CR matches to MK450538 (Staphylococcus phage vB_SpsS_QT1, complete genome) position: , mismatch: 5, identity: 0.833

agtca-ataactttgtataactttttataac	CRISPR spacer
-ttcatataactttttataactttttagaat	Protospacer
  *** ******** ************ **.

2. spacer 2.4|2452332|30|NZ_CP047121|CRT,CRISPRCasFinder,PILER-CR matches to AY855346 (Clostridium difficile bacteriophage phi CD119, complete genome) position: , mismatch: 5, identity: 0.833

agtcaataactttgtataacttttt-ataac	CRISPR spacer
tctctataactttctataactttttcataa-	Protospacer
  ** ******** *********** ****

3. spacer 2.4|2452332|30|NZ_CP047121|CRT,CRISPRCasFinder,PILER-CR matches to NC_007917 (Clostridium phage phi CD119, complete genome) position: , mismatch: 5, identity: 0.833

agtcaataactttgtataacttttt-ataac	CRISPR spacer
tctctataactttctataactttttcataa-	Protospacer
  ** ******** *********** ****

4. spacer 2.4|2452332|30|NZ_CP047121|CRT,CRISPRCasFinder,PILER-CR matches to NC_028996 (Clostridium phage phiCDHM19, complete genome) position: , mismatch: 5, identity: 0.833

agtcaataactttgtataacttttt-ataac	CRISPR spacer
tctctataactttctataactttttcataa-	Protospacer
  ** ******** *********** ****

5. spacer 2.1|2452138|26|NZ_CP047121|CRT matches to CP006880 (Rhizobium gallicum bv. gallicum R602 plasmid pRgalR602c, complete sequence) position: , mismatch: 6, identity: 0.769

ctgaaccagcaagcaaaaacatgcaa	CRISPR spacer
ctgaacgagcaagcaaaaacaacgtg	Protospacer
****** **************    .

6. spacer 2.4|2452332|30|NZ_CP047121|CRT,CRISPRCasFinder,PILER-CR matches to MK448761 (Streptococcus phage Javan445, complete genome) position: , mismatch: 6, identity: 0.8

agtcaataactttgtataactttttataac	CRISPR spacer
tataaataactttgtctgactttttataag	Protospacer
 .* *********** *.***********

7. spacer 2.4|2452332|30|NZ_CP047121|CRT,CRISPRCasFinder,PILER-CR matches to MK448760 (Streptococcus phage Javan443, complete genome) position: , mismatch: 6, identity: 0.8

agtcaataactttgtataactttttataac	CRISPR spacer
tataaataactttgtctgactttttataag	Protospacer
 .* *********** *.***********

8. spacer 2.4|2452332|30|NZ_CP047121|CRT,CRISPRCasFinder,PILER-CR matches to NZ_KP738729 (Aeromonas sp. Ne-1 plasmid pNe-1, complete sequence) position: , mismatch: 6, identity: 0.8

agtcaataactttgtataactttttataac	CRISPR spacer
agtcaataacttttgataacttttccgcac	Protospacer
*************  *********.   **

9. spacer 2.4|2452332|30|NZ_CP047121|CRT,CRISPRCasFinder,PILER-CR matches to NC_029016 (Enterococcus phage vB_EfaS_IME198, complete genome) position: , mismatch: 6, identity: 0.8

agtcaataactttgtataactttttataac	CRISPR spacer
tgtcaataactttttacaacttttttaaat	Protospacer
 ************ **.********  **.

10. spacer 2.4|2452332|30|NZ_CP047121|CRT,CRISPRCasFinder,PILER-CR matches to NZ_CP031070 (Bacillus sp. JAS24-2 plasmid pl278, complete sequence) position: , mismatch: 6, identity: 0.8

agtcaataactttgtataactttttataac	CRISPR spacer
aattattaacttcgtataattttttataaa	Protospacer
*.*.* ******.******.*********

11. spacer 2.4|2452332|30|NZ_CP047121|CRT,CRISPRCasFinder,PILER-CR matches to NZ_CP013700 (Clostridium botulinum strain AM1195 plasmid pRSJ11_1, complete sequence) position: , mismatch: 6, identity: 0.8

--agtcaataactttgtataactttttataac	CRISPR spacer
ttggtta--aactttgtattactttttatatc	Protospacer
  .**.*  ********** ********** *

12. spacer 2.11|2452794|30|NZ_CP047121|CRT,CRISPRCasFinder,PILER-CR matches to GQ451696 (Leuconostoc phage 1-A4, complete genome) position: , mismatch: 6, identity: 0.8

ataccgttgagtttatcggcggtaattaaa	CRISPR spacer
atgttgttaagtttatcggctgtaattata	Protospacer
**...***.*********** ******* *

13. spacer 2.12|2452860|30|NZ_CP047121|CRT,CRISPRCasFinder,PILER-CR matches to NZ_CP053657 (Bacillus cereus strain CTMA_1571 plasmid p.1, complete sequence) position: , mismatch: 6, identity: 0.8

acaataatagatgttacgaatatctttatt	CRISPR spacer
ccaataatagatgttccgaatatacctata	Protospacer
 ************** ******* ..***

14. spacer 2.12|2452860|30|NZ_CP047121|CRT,CRISPRCasFinder,PILER-CR matches to LN881734 (Escherichia phage slur11, complete genome) position: , mismatch: 6, identity: 0.8

acaataatagatgttacgaatatctttatt	CRISPR spacer
aaaataataaatgttgcgaatatcttcttc	Protospacer
* *******.*****.**********. *.

15. spacer 2.12|2452860|30|NZ_CP047121|CRT,CRISPRCasFinder,PILER-CR matches to MG781191 (Escherichia phage vB_EcoM-fHoEco02, complete genome) position: , mismatch: 6, identity: 0.8

acaataatagatgttacgaatatctttatt	CRISPR spacer
aaaataataaatgttgcgaatatcttcttc	Protospacer
* *******.*****.**********. *.

16. spacer 2.12|2452860|30|NZ_CP047121|CRT,CRISPRCasFinder,PILER-CR matches to MT764206 (Escherichia phage JEP6, complete genome) position: , mismatch: 6, identity: 0.8

acaataatagatgttacgaatatctttatt	CRISPR spacer
aaaataataaatgttgcgaatatcttcttc	Protospacer
* *******.*****.**********. *.

17. spacer 2.12|2452860|30|NZ_CP047121|CRT,CRISPRCasFinder,PILER-CR matches to MN895437 (Escherichia phage teqskov, complete genome) position: , mismatch: 6, identity: 0.8

acaataatagatgttacgaatatctttatt	CRISPR spacer
aaaataataaatgttgcgaatatcttcttc	Protospacer
* *******.*****.**********. *.

18. spacer 2.12|2452860|30|NZ_CP047121|CRT,CRISPRCasFinder,PILER-CR matches to MH837626 (Escherichia phage vB_vPM_PD112, complete genome) position: , mismatch: 6, identity: 0.8

acaataatagatgttacgaatatctttatt	CRISPR spacer
aaaataataaatgttgcgaatatcttcttc	Protospacer
* *******.*****.**********. *.

19. spacer 2.12|2452860|30|NZ_CP047121|CRT,CRISPRCasFinder,PILER-CR matches to NC_019399 (Enterobacteria phage vB_EcoM_ACG-C40, complete genome) position: , mismatch: 6, identity: 0.8

acaataatagatgttacgaatatctttatt	CRISPR spacer
aaaataataaatgttgcgaatatcttcttc	Protospacer
* *******.*****.**********. *.

20. spacer 2.12|2452860|30|NZ_CP047121|CRT,CRISPRCasFinder,PILER-CR matches to KM606997 (Enterobacteria phage RB7, complete genome) position: , mismatch: 6, identity: 0.8

acaataatagatgttacgaatatctttatt	CRISPR spacer
aaaataataaatgttgcgaatatcttcttc	Protospacer
* *******.*****.**********. *.

21. spacer 2.12|2452860|30|NZ_CP047121|CRT,CRISPRCasFinder,PILER-CR matches to LN881736 (Escherichia phage slur14, complete genome) position: , mismatch: 6, identity: 0.8

acaataatagatgttacgaatatctttatt	CRISPR spacer
aaaataataaatgttgcgaatatcttcttc	Protospacer
* *******.*****.**********. *.

22. spacer 2.12|2452860|30|NZ_CP047121|CRT,CRISPRCasFinder,PILER-CR matches to KU925172 (Escherichia phage PE37, complete genome) position: , mismatch: 6, identity: 0.8

acaataatagatgttacgaatatctttatt	CRISPR spacer
aaaataataaatgttgcgaatatcttcttc	Protospacer
* *******.*****.**********. *.

23. spacer 2.12|2452860|30|NZ_CP047121|CRT,CRISPRCasFinder,PILER-CR matches to MH051915 (Enterobacteria phage vB_EcoM_IME339, complete genome) position: , mismatch: 6, identity: 0.8

acaataatagatgttacgaatatctttatt	CRISPR spacer
aaaataataaatgttgcgaatatcttcttc	Protospacer
* *******.*****.**********. *.

24. spacer 2.12|2452860|30|NZ_CP047121|CRT,CRISPRCasFinder,PILER-CR matches to LR215722 (Yersinia phage fPS-2 genome assembly, chromosome: I) position: , mismatch: 6, identity: 0.8

acaataatagatgttacgaatatctttatt	CRISPR spacer
aaaataataaatgttgcgaatatcttcttc	Protospacer
* *******.*****.**********. *.

25. spacer 2.12|2452860|30|NZ_CP047121|CRT,CRISPRCasFinder,PILER-CR matches to MT682713 (Escherichia phage vB_EcoM_Ozark, complete genome) position: , mismatch: 6, identity: 0.8

acaataatagatgttacgaatatctttatt	CRISPR spacer
aaaataataaatgttgcgaatatcttcttc	Protospacer
* *******.*****.**********. *.

26. spacer 2.12|2452860|30|NZ_CP047121|CRT,CRISPRCasFinder,PILER-CR matches to MH751506 (Escherichia phage T2, complete genome) position: , mismatch: 6, identity: 0.8

acaataatagatgttacgaatatctttatt	CRISPR spacer
aaaataataaatgttgcgaatatcttcttc	Protospacer
* *******.*****.**********. *.

27. spacer 2.12|2452860|30|NZ_CP047121|CRT,CRISPRCasFinder,PILER-CR matches to NC_042129 (Escherichia phage slur03, complete genome) position: , mismatch: 6, identity: 0.8

acaataatagatgttacgaatatctttatt	CRISPR spacer
aaaataataaatgttgcgaatatcttcttc	Protospacer
* *******.*****.**********. *.

28. spacer 2.12|2452860|30|NZ_CP047121|CRT,CRISPRCasFinder,PILER-CR matches to NC_042077 (Shigella phage Sf21, complete genome) position: , mismatch: 6, identity: 0.8

acaataatagatgttacgaatatctttatt	CRISPR spacer
aaaataataaatgttgcgaatatcttcttc	Protospacer
* *******.*****.**********. *.

29. spacer 2.12|2452860|30|NZ_CP047121|CRT,CRISPRCasFinder,PILER-CR matches to LN881732 (Escherichia phage slur07, complete genome) position: , mismatch: 6, identity: 0.8

acaataatagatgttacgaatatctttatt	CRISPR spacer
aaaataataaatgttgcgaatatcttcttc	Protospacer
* *******.*****.**********. *.

30. spacer 2.12|2452860|30|NZ_CP047121|CRT,CRISPRCasFinder,PILER-CR matches to MN508618 (UNVERIFIED: Escherichia phage ES26, complete genome) position: , mismatch: 6, identity: 0.8

acaataatagatgttacgaatatctttatt	CRISPR spacer
aaaataataaatgttgcgaatatcttcttc	Protospacer
* *******.*****.**********. *.

31. spacer 2.12|2452860|30|NZ_CP047121|CRT,CRISPRCasFinder,PILER-CR matches to MT884006 (Escherichia phage vb_EcoM_bov9_1, complete genome) position: , mismatch: 6, identity: 0.8

acaataatagatgttacgaatatctttatt	CRISPR spacer
aaaataataaatgttgcgaatatcttcttc	Protospacer
* *******.*****.**********. *.

32. spacer 2.12|2452860|30|NZ_CP047121|CRT,CRISPRCasFinder,PILER-CR matches to KM607002 (Enterobacteria phage RB55, complete genome) position: , mismatch: 6, identity: 0.8

acaataatagatgttacgaatatctttatt	CRISPR spacer
aaaataataaatgttgcgaatatcttcttc	Protospacer
* *******.*****.**********. *.

33. spacer 2.12|2452860|30|NZ_CP047121|CRT,CRISPRCasFinder,PILER-CR matches to KY608967 (UNVERIFIED: Escherichia phage CF2, complete genome) position: , mismatch: 6, identity: 0.8

acaataatagatgttacgaatatctttatt	CRISPR spacer
aaaataataaatgttgcgaatatcttcttc	Protospacer
* *******.*****.**********. *.

34. spacer 2.12|2452860|30|NZ_CP047121|CRT,CRISPRCasFinder,PILER-CR matches to MT176425 (Citrobacter phage PhiZZ23, complete genome) position: , mismatch: 6, identity: 0.8

acaataatagatgttacgaatatctttatt	CRISPR spacer
aaaataataaatgttgcgaatatcttcttc	Protospacer
* *******.*****.**********. *.

35. spacer 2.12|2452860|30|NZ_CP047121|CRT,CRISPRCasFinder,PILER-CR matches to NC_042039 (Shigella phage Sf22, complete genome) position: , mismatch: 6, identity: 0.8

acaataatagatgttacgaatatctttatt	CRISPR spacer
aaaataataaatgttgcgaatatcttcttc	Protospacer
* *******.*****.**********. *.

36. spacer 2.12|2452860|30|NZ_CP047121|CRT,CRISPRCasFinder,PILER-CR matches to MF327009 (Shigella phage Sf25, complete genome) position: , mismatch: 6, identity: 0.8

acaataatagatgttacgaatatctttatt	CRISPR spacer
aaaataataaatgttgcgaatatcttcttc	Protospacer
* *******.*****.**********. *.

37. spacer 2.12|2452860|30|NZ_CP047121|CRT,CRISPRCasFinder,PILER-CR matches to AP018813 (Enterobacteria phage T2 DNA, complete genome) position: , mismatch: 6, identity: 0.8

acaataatagatgttacgaatatctttatt	CRISPR spacer
aaaataataaatgttgcgaatatcttcttc	Protospacer
* *******.*****.**********. *.

38. spacer 2.12|2452860|30|NZ_CP047121|CRT,CRISPRCasFinder,PILER-CR matches to MN580668 (Salmonella phage pSe_SNUABM_01, complete genome) position: , mismatch: 6, identity: 0.8

acaataatagatgttacgaatatctttatt	CRISPR spacer
aaaataataaatgttgcgaatatcttcttc	Protospacer
* *******.*****.**********. *.

39. spacer 2.12|2452860|30|NZ_CP047121|CRT,CRISPRCasFinder,PILER-CR matches to MK373781 (Escherichia phage vB_EcoM_KAW1E185, complete genome) position: , mismatch: 6, identity: 0.8

acaataatagatgttacgaatatctttatt	CRISPR spacer
aaaataataaatgttgcgaatatcttcttc	Protospacer
* *******.*****.**********. *.

40. spacer 2.12|2452860|30|NZ_CP047121|CRT,CRISPRCasFinder,PILER-CR matches to NC_025829 (Shigella phage pSs-1, complete genome) position: , mismatch: 6, identity: 0.8

acaataatagatgttacgaatatctttatt	CRISPR spacer
aaaataataaatgttgcgaatatcttcttc	Protospacer
* *******.*****.**********. *.

41. spacer 2.12|2452860|30|NZ_CP047121|CRT,CRISPRCasFinder,PILER-CR matches to LN881737 (Escherichia phage slur13, complete genome) position: , mismatch: 6, identity: 0.8

acaataatagatgttacgaatatctttatt	CRISPR spacer
aaaataataaatgttgcgaatatcttcttc	Protospacer
* *******.*****.**********. *.

42. spacer 2.12|2452860|30|NZ_CP047121|CRT,CRISPRCasFinder,PILER-CR matches to LR597657 (Escherichia phage T4_ev240 genome assembly, chromosome: 1) position: , mismatch: 6, identity: 0.8

acaataatagatgttacgaatatctttatt	CRISPR spacer
aaaataataaatgttgcgaatatcttcttc	Protospacer
* *******.*****.**********. *.

43. spacer 2.12|2452860|30|NZ_CP047121|CRT,CRISPRCasFinder,PILER-CR matches to NC_030953 (Shigella phage SHFML-11, complete genome) position: , mismatch: 6, identity: 0.8

acaataatagatgttacgaatatctttatt	CRISPR spacer
aaaataataaatgttgcgaatatcttcttc	Protospacer
* *******.*****.**********. *.

44. spacer 2.12|2452860|30|NZ_CP047121|CRT,CRISPRCasFinder,PILER-CR matches to MN508614 (UNVERIFIED: Escherichia phage ES12, complete genome) position: , mismatch: 6, identity: 0.8

acaataatagatgttacgaatatctttatt	CRISPR spacer
aaaataataaatgttgcgaatatcttcttc	Protospacer
* *******.*****.**********. *.

45. spacer 2.12|2452860|30|NZ_CP047121|CRT,CRISPRCasFinder,PILER-CR matches to X15818 (Bacteriphage T4C genes 34, 33 and 59) position: , mismatch: 6, identity: 0.8

acaataatagatgttacgaatatctttatt	CRISPR spacer
aaaataataaatgttgcgaatatcttcttc	Protospacer
* *******.*****.**********. *.

46. spacer 2.12|2452860|30|NZ_CP047121|CRT,CRISPRCasFinder,PILER-CR matches to KJ477684 (Enterobacteria phage T4 strain wild, complete genome) position: , mismatch: 6, identity: 0.8

acaataatagatgttacgaatatctttatt	CRISPR spacer
aaaataataaatgttgcgaatatcttcttc	Protospacer
* *******.*****.**********. *.

47. spacer 2.12|2452860|30|NZ_CP047121|CRT,CRISPRCasFinder,PILER-CR matches to MG781190 (Escherichia phage vB_EcoM-fFiEco06, complete genome) position: , mismatch: 6, identity: 0.8

acaataatagatgttacgaatatctttatt	CRISPR spacer
aaaataataaatgttgcgaatatcttcttc	Protospacer
* *******.*****.**********. *.

48. spacer 2.12|2452860|30|NZ_CP047121|CRT,CRISPRCasFinder,PILER-CR matches to LR215723 (Yersinia phage fPS-90 genome assembly, chromosome: I) position: , mismatch: 6, identity: 0.8

acaataatagatgttacgaatatctttatt	CRISPR spacer
aaaataataaatgttgcgaatatcttcttc	Protospacer
* *******.*****.**********. *.

49. spacer 2.12|2452860|30|NZ_CP047121|CRT,CRISPRCasFinder,PILER-CR matches to KM606996 (Enterobacteria phage RB6, complete genome) position: , mismatch: 6, identity: 0.8

acaataatagatgttacgaatatctttatt	CRISPR spacer
aaaataataaatgttgcgaatatcttcttc	Protospacer
* *******.*****.**********. *.

50. spacer 2.12|2452860|30|NZ_CP047121|CRT,CRISPRCasFinder,PILER-CR matches to AP018932 (Escherichia phage KIT03 DNA, complete sequence) position: , mismatch: 6, identity: 0.8

acaataatagatgttacgaatatctttatt	CRISPR spacer
aaaataataaatgttgcgaatatcttcttc	Protospacer
* *******.*****.**********. *.

51. spacer 2.12|2452860|30|NZ_CP047121|CRT,CRISPRCasFinder,PILER-CR matches to NC_025448 (Enterobacteria phage RB27, complete genome) position: , mismatch: 6, identity: 0.8

acaataatagatgttacgaatatctttatt	CRISPR spacer
aaaataataaatgttgcgaatatcttcttc	Protospacer
* *******.*****.**********. *.

52. spacer 2.12|2452860|30|NZ_CP047121|CRT,CRISPRCasFinder,PILER-CR matches to KJ668714 (Escherichia phage e11/2, complete genome) position: , mismatch: 6, identity: 0.8

acaataatagatgttacgaatatctttatt	CRISPR spacer
aaaataataaatgttgcgaatatcttcttc	Protospacer
* *******.*****.**********. *.

53. spacer 2.12|2452860|30|NZ_CP047121|CRT,CRISPRCasFinder,PILER-CR matches to HM137666 (Enterobacteria phage T4T, complete genome) position: , mismatch: 6, identity: 0.8

acaataatagatgttacgaatatctttatt	CRISPR spacer
aaaataataaatgttgcgaatatcttcttc	Protospacer
* *******.*****.**********. *.

54. spacer 2.12|2452860|30|NZ_CP047121|CRT,CRISPRCasFinder,PILER-CR matches to MN895438 (Escherichia phage teqdroes, complete genome) position: , mismatch: 6, identity: 0.8

acaataatagatgttacgaatatctttatt	CRISPR spacer
aaaataataaatgttgcgaatatcttcttc	Protospacer
* *******.*****.**********. *.

55. spacer 2.12|2452860|30|NZ_CP047121|CRT,CRISPRCasFinder,PILER-CR matches to KP869105 (Escherichia coli O157 typing phage 7, partial genome) position: , mismatch: 6, identity: 0.8

acaataatagatgttacgaatatctttatt	CRISPR spacer
aaaataataaatgttgcgaatatcttcttc	Protospacer
* *******.*****.**********. *.

56. spacer 2.12|2452860|30|NZ_CP047121|CRT,CRISPRCasFinder,PILER-CR matches to MF158046 (Shigella phage Sf23, complete genome) position: , mismatch: 6, identity: 0.8

acaataatagatgttacgaatatctttatt	CRISPR spacer
aaaataataaatgttgcgaatatcttcttc	Protospacer
* *******.*****.**********. *.

57. spacer 2.12|2452860|30|NZ_CP047121|CRT,CRISPRCasFinder,PILER-CR matches to MT884007 (Escherichia phage vb_EcoM_bov10K1, complete genome) position: , mismatch: 6, identity: 0.8

acaataatagatgttacgaatatctttatt	CRISPR spacer
aaaataataaatgttgcgaatatcttcttc	Protospacer
* *******.*****.**********. *.

58. spacer 2.12|2452860|30|NZ_CP047121|CRT,CRISPRCasFinder,PILER-CR matches to NC_000866 (Enterobacteria phage T4, complete genome) position: , mismatch: 6, identity: 0.8

acaataatagatgttacgaatatctttatt	CRISPR spacer
aaaataataaatgttgcgaatatcttcttc	Protospacer
* *******.*****.**********. *.

59. spacer 2.12|2452860|30|NZ_CP047121|CRT,CRISPRCasFinder,PILER-CR matches to MT682714 (Escherichia phage vB_EcoM_Lutter, complete genome) position: , mismatch: 6, identity: 0.8

acaataatagatgttacgaatatctttatt	CRISPR spacer
aaaataataaatgttgcgaatatcttcttc	Protospacer
* *******.*****.**********. *.

60. spacer 2.12|2452860|30|NZ_CP047121|CRT,CRISPRCasFinder,PILER-CR matches to AY310907 (Enterobacteria phage T2 Gp59 gene, partial cds; Gp32, Frd.3, Frd.2, Frd.1, dihydrofolate reductase, dTMP thymidylate synthase, and NrdA.2 genes, complete cds; and NrdA.1 gene, partial cds) position: , mismatch: 6, identity: 0.8

acaataatagatgttacgaatatctttatt	CRISPR spacer
aaaataataaatgttgcgaatatcttcttc	Protospacer
* *******.*****.**********. *.

61. spacer 2.12|2452860|30|NZ_CP047121|CRT,CRISPRCasFinder,PILER-CR matches to LR746311 (Shigella phage vB_SsoM_113 genome assembly, chromosome: 1) position: , mismatch: 6, identity: 0.8

acaataatagatgttacgaatatctttatt	CRISPR spacer
aaaataataaatgttgcgaatatcttcttc	Protospacer
* *******.*****.**********. *.

62. spacer 2.12|2452860|30|NZ_CP047121|CRT,CRISPRCasFinder,PILER-CR matches to MK962750 (Shigella phage CM8, complete genome) position: , mismatch: 6, identity: 0.8

acaataatagatgttacgaatatctttatt	CRISPR spacer
aaaataataaatgttgcgaatatcttcttc	Protospacer
* *******.*****.**********. *.

63. spacer 2.12|2452860|30|NZ_CP047121|CRT,CRISPRCasFinder,PILER-CR matches to MH553563 (Enterobacteria phage RB18, complete genome) position: , mismatch: 6, identity: 0.8

acaataatagatgttacgaatatctttatt	CRISPR spacer
aaaataataaatgttgcgaatatcttcttc	Protospacer
* *******.*****.**********. *.

64. spacer 2.12|2452860|30|NZ_CP047121|CRT,CRISPRCasFinder,PILER-CR matches to MN895436 (Escherichia phage teqsoen, complete genome) position: , mismatch: 6, identity: 0.8

acaataatagatgttacgaatatctttatt	CRISPR spacer
aaaataataaatgttgcgaatatcttcttc	Protospacer
* *******.*****.**********. *.

65. spacer 2.12|2452860|30|NZ_CP047121|CRT,CRISPRCasFinder,PILER-CR matches to KM606995 (Enterobacteria phage RB5, complete genome) position: , mismatch: 6, identity: 0.8

acaataatagatgttacgaatatctttatt	CRISPR spacer
aaaataataaatgttgcgaatatcttcttc	Protospacer
* *******.*****.**********. *.

66. spacer 2.12|2452860|30|NZ_CP047121|CRT,CRISPRCasFinder,PILER-CR matches to MT682710 (Escherichia phage vB_EcoM_FT, complete genome) position: , mismatch: 6, identity: 0.8

acaataatagatgttacgaatatctttatt	CRISPR spacer
aaaataataaatgttgcgaatatcttcttc	Protospacer
* *******.*****.**********. *.

67. spacer 2.12|2452860|30|NZ_CP047121|CRT,CRISPRCasFinder,PILER-CR matches to MG775043 (Citrobacter phage vB_CroM_CrRp10, complete genome) position: , mismatch: 6, identity: 0.8

acaataatagatgttacgaatatctttatt	CRISPR spacer
aaaataataaatgttgcgaatatcttcttc	Protospacer
* *******.*****.**********. *.

68. spacer 2.12|2452860|30|NZ_CP047121|CRT,CRISPRCasFinder,PILER-CR matches to MN781580 (Shigella virus KRT47, complete genome) position: , mismatch: 6, identity: 0.8

acaataatagatgttacgaatatctttatt	CRISPR spacer
aaaataataaatgttgcgaatatcttcttc	Protospacer
* *******.*****.**********. *.

69. spacer 2.12|2452860|30|NZ_CP047121|CRT,CRISPRCasFinder,PILER-CR matches to LN881726 (Escherichia phage slur02, complete genome) position: , mismatch: 6, identity: 0.8

acaataatagatgttacgaatatctttatt	CRISPR spacer
aaaataataaatgttgcgaatatcttcttc	Protospacer
* *******.*****.**********. *.

70. spacer 2.12|2452860|30|NZ_CP047121|CRT,CRISPRCasFinder,PILER-CR matches to NC_042078 (Shigella phage Sf24, complete genome) position: , mismatch: 6, identity: 0.8

acaataatagatgttacgaatatctttatt	CRISPR spacer
aaaataataaatgttgcgaatatcttcttc	Protospacer
* *******.*****.**********. *.

71. spacer 2.12|2452860|30|NZ_CP047121|CRT,CRISPRCasFinder,PILER-CR matches to MH992121 (UNVERIFIED: Escherichia phage MLF4, partial genome) position: , mismatch: 6, identity: 0.8

acaataatagatgttacgaatatctttatt	CRISPR spacer
aaaataataaatgttgcgaatatcttcttc	Protospacer
* *******.*****.**********. *.

72. spacer 2.12|2452860|30|NZ_CP047121|CRT,CRISPRCasFinder,PILER-CR matches to MK373779 (Escherichia phage vB_EcoM_G9062, complete genome) position: , mismatch: 6, identity: 0.8

acaataatagatgttacgaatatctttatt	CRISPR spacer
aaaataataaatgttgcgaatatcttcttc	Protospacer
* *******.*****.**********. *.

73. spacer 2.12|2452860|30|NZ_CP047121|CRT,CRISPRCasFinder,PILER-CR matches to KR269718 (Escherichia phage HY03, complete genome) position: , mismatch: 6, identity: 0.8

acaataatagatgttacgaatatctttatt	CRISPR spacer
aaaataataaatgttgcgaatatcttcttc	Protospacer
* *******.*****.**********. *.

74. spacer 2.12|2452860|30|NZ_CP047121|CRT,CRISPRCasFinder,PILER-CR matches to MT179807 (Escherichia phage vB_EcoM_IME537, complete genome) position: , mismatch: 6, identity: 0.8

acaataatagatgttacgaatatctttatt	CRISPR spacer
aaaataataaatgttgcgaatatcttcttc	Protospacer
* *******.*****.**********. *.

75. spacer 2.12|2452860|30|NZ_CP047121|CRT,CRISPRCasFinder,PILER-CR matches to KX828711 (Shigella phage SH7, complete genome) position: , mismatch: 6, identity: 0.8

acaataatagatgttacgaatatctttatt	CRISPR spacer
aaaataataaatgttgcgaatatcttcttc	Protospacer
* *******.*****.**********. *.

76. spacer 2.12|2452860|30|NZ_CP047121|CRT,CRISPRCasFinder,PILER-CR matches to KJ477686 (Enterobacteria phage T4 strain GT7, complete genome) position: , mismatch: 6, identity: 0.8

acaataatagatgttacgaatatctttatt	CRISPR spacer
aaaataataaatgttgcgaatatcttcttc	Protospacer
* *******.*****.**********. *.

77. spacer 2.12|2452860|30|NZ_CP047121|CRT,CRISPRCasFinder,PILER-CR matches to MT446387 (UNVERIFIED: Escherichia virus TH09, complete genome) position: , mismatch: 6, identity: 0.8

acaataatagatgttacgaatatctttatt	CRISPR spacer
aaaataataaatgttgcgaatatcttcttc	Protospacer
* *******.*****.**********. *.

78. spacer 2.12|2452860|30|NZ_CP047121|CRT,CRISPRCasFinder,PILER-CR matches to MK327944 (Escherichia phage vB_EcoM_G2540-3, complete genome) position: , mismatch: 6, identity: 0.8

acaataatagatgttacgaatatctttatt	CRISPR spacer
aaaataataaatgttgcgaatatcttcttc	Protospacer
* *******.*****.**********. *.

79. spacer 2.12|2452860|30|NZ_CP047121|CRT,CRISPRCasFinder,PILER-CR matches to FJ839692 (Enterobacteria phage RB14, complete genome) position: , mismatch: 6, identity: 0.8

acaataatagatgttacgaatatctttatt	CRISPR spacer
aaaataataaatgttgcgaatatcttcttc	Protospacer
* *******.*****.**********. *.

80. spacer 2.12|2452860|30|NZ_CP047121|CRT,CRISPRCasFinder,PILER-CR matches to KX452694 (UNVERIFIED: Escherichia phage KPN1 genomic sequence) position: , mismatch: 6, identity: 0.8

acaataatagatgttacgaatatctttatt	CRISPR spacer
aaaataataaatgttgcgaatatcttcttc	Protospacer
* *******.*****.**********. *.

81. spacer 2.12|2452860|30|NZ_CP047121|CRT,CRISPRCasFinder,PILER-CR matches to KM606994 (Enterobacteria phage RB3, complete genome) position: , mismatch: 6, identity: 0.8

acaataatagatgttacgaatatctttatt	CRISPR spacer
aaaataataaatgttgcgaatatcttcttc	Protospacer
* *******.*****.**********. *.

82. spacer 2.12|2452860|30|NZ_CP047121|CRT,CRISPRCasFinder,PILER-CR matches to MK977694 (Escherichia phage vB_EcoM-Sa45lw, complete genome) position: , mismatch: 6, identity: 0.8

acaataatagatgttacgaatatctttatt	CRISPR spacer
aaaataataaatgttgcgaatatcttcttc	Protospacer
* *******.*****.**********. *.

83. spacer 2.12|2452860|30|NZ_CP047121|CRT,CRISPRCasFinder,PILER-CR matches to KX130862 (Shigella phage SHFML-26, complete genome) position: , mismatch: 6, identity: 0.8

acaataatagatgttacgaatatctttatt	CRISPR spacer
aaaataataaatgttgcgaatatcttcttc	Protospacer
* *******.*****.**********. *.

84. spacer 2.12|2452860|30|NZ_CP047121|CRT,CRISPRCasFinder,PILER-CR matches to KU867876 (Escherichia phage vB_EcoM-UFV13, complete genome) position: , mismatch: 6, identity: 0.8

acaataatagatgttacgaatatctttatt	CRISPR spacer
aaaataataaatgttgcgaatatcttcttc	Protospacer
* *******.*****.**********. *.

85. spacer 2.12|2452860|30|NZ_CP047121|CRT,CRISPRCasFinder,PILER-CR matches to MK327936 (Escherichia phage vB_EcoM_G2540, complete genome) position: , mismatch: 6, identity: 0.8

acaataatagatgttacgaatatctttatt	CRISPR spacer
aaaataataaatgttgcgaatatcttcttc	Protospacer
* *******.*****.**********. *.

86. spacer 2.12|2452860|30|NZ_CP047121|CRT,CRISPRCasFinder,PILER-CR matches to NC_031030 (Escherichia phage UFV-AREG1, complete genome) position: , mismatch: 6, identity: 0.8

acaataatagatgttacgaatatctttatt	CRISPR spacer
aaaataataaatgttgcgaatatcttcttc	Protospacer
* *******.*****.**********. *.

87. spacer 2.12|2452860|30|NZ_CP047121|CRT,CRISPRCasFinder,PILER-CR matches to FJ839693 (Enterobacteria phage RB51, complete genome) position: , mismatch: 6, identity: 0.8

acaataatagatgttacgaatatctttatt	CRISPR spacer
aaaataataaatgttgcgaatatcttcttc	Protospacer
* *******.*****.**********. *.

88. spacer 2.12|2452860|30|NZ_CP047121|CRT,CRISPRCasFinder,PILER-CR matches to KM607004 (Enterobacteria phage RB68, complete genome) position: , mismatch: 6, identity: 0.8

acaataatagatgttacgaatatctttatt	CRISPR spacer
aaaataataaatgttgcgaatatcttcttc	Protospacer
* *******.*****.**********. *.

89. spacer 2.12|2452860|30|NZ_CP047121|CRT,CRISPRCasFinder,PILER-CR matches to MN994497 (Phage NBEco003, complete genome) position: , mismatch: 6, identity: 0.8

acaataatagatgttacgaatatctttatt	CRISPR spacer
aaaataataaatgttgcgaatatcttcttc	Protospacer
* *******.*****.**********. *.

90. spacer 2.12|2452860|30|NZ_CP047121|CRT,CRISPRCasFinder,PILER-CR matches to MK962755 (Shigella phage JK38, complete genome) position: , mismatch: 6, identity: 0.8

acaataatagatgttacgaatatctttatt	CRISPR spacer
aaaataataaatgttgcgaatatcttcttc	Protospacer
* *******.*****.**********. *.

91. spacer 2.12|2452860|30|NZ_CP047121|CRT,CRISPRCasFinder,PILER-CR matches to MH243439 (Escherichia phage vB_EcoM_NBG2, complete genome) position: , mismatch: 6, identity: 0.8

acaataatagatgttacgaatatctttatt	CRISPR spacer
aaaataataaatgttgcgaatatcttcttc	Protospacer
* *******.*****.**********. *.

92. spacer 2.12|2452860|30|NZ_CP047121|CRT,CRISPRCasFinder,PILER-CR matches to MF001360 (Escherichia phage ECO4, partial genome) position: , mismatch: 6, identity: 0.8

acaataatagatgttacgaatatctttatt	CRISPR spacer
aaaataataaatgttgcgaatatcttcttc	Protospacer
* *******.*****.**********. *.

93. spacer 2.12|2452860|30|NZ_CP047121|CRT,CRISPRCasFinder,PILER-CR matches to KJ477685 (Enterobacteria phage T4 strain 147, complete genome) position: , mismatch: 6, identity: 0.8

acaataatagatgttacgaatatctttatt	CRISPR spacer
aaaataataaatgttgcgaatatcttcttc	Protospacer
* *******.*****.**********. *.

94. spacer 2.12|2452860|30|NZ_CP047121|CRT,CRISPRCasFinder,PILER-CR matches to KT184311 (Enterobacteria phage GiZh, complete genome) position: , mismatch: 6, identity: 0.8

acaataatagatgttacgaatatctttatt	CRISPR spacer
aaaataataaatgttgcgaatatcttcttc	Protospacer
* *******.*****.**********. *.

95. spacer 2.12|2452860|30|NZ_CP047121|CRT,CRISPRCasFinder,PILER-CR matches to MK886800 (Escherichia phage EcNP1, complete genome) position: , mismatch: 6, identity: 0.8

acaataatagatgttacgaatatctttatt	CRISPR spacer
aaaataataaatgttgcgaatatcttcttc	Protospacer
* *******.*****.**********. *.

96. spacer 2.12|2452860|30|NZ_CP047121|CRT,CRISPRCasFinder,PILER-CR matches to LR215724 (Yersinia phage fPS-65 genome assembly, chromosome: I) position: , mismatch: 6, identity: 0.8

acaataatagatgttacgaatatctttatt	CRISPR spacer
aaaataataaatgttgcgaatatcttcttc	Protospacer
* *******.*****.**********. *.

97. spacer 2.12|2452860|30|NZ_CP047121|CRT,CRISPRCasFinder,PILER-CR matches to LN881733 (Escherichia phage slur08, complete genome) position: , mismatch: 6, identity: 0.8

acaataatagatgttacgaatatctttatt	CRISPR spacer
aaaataataaatgttgcgaatatcttcttc	Protospacer
* *******.*****.**********. *.

98. spacer 2.12|2452860|30|NZ_CP047121|CRT,CRISPRCasFinder,PILER-CR matches to AP011113 (Enterobacteria phage AR1 DNA, complete genome) position: , mismatch: 6, identity: 0.8

acaataatagatgttacgaatatctttatt	CRISPR spacer
aaaataataaatgttgcgaatatcttcttc	Protospacer
* *******.*****.**********. *.

99. spacer 2.12|2452860|30|NZ_CP047121|CRT,CRISPRCasFinder,PILER-CR matches to MK373786 (Escherichia phage vB_EcoM_R5505, complete genome) position: , mismatch: 6, identity: 0.8

acaataatagatgttacgaatatctttatt	CRISPR spacer
aaaataataaatgttgcgaatatcttcttc	Protospacer
* *******.*****.**********. *.

100. spacer 2.12|2452860|30|NZ_CP047121|CRT,CRISPRCasFinder,PILER-CR matches to LC348380 (Escherichia phage T2 DNA, complete sequence) position: , mismatch: 6, identity: 0.8

acaataatagatgttacgaatatctttatt	CRISPR spacer
aaaataataaatgttgcgaatatcttcttc	Protospacer
* *******.*****.**********. *.

101. spacer 2.12|2452860|30|NZ_CP047121|CRT,CRISPRCasFinder,PILER-CR matches to MT176424 (Citrobacter phage PhiZZ6, complete genome) position: , mismatch: 6, identity: 0.8

acaataatagatgttacgaatatctttatt	CRISPR spacer
aaaataataaatgttgcgaatatcttcttc	Protospacer
* *******.*****.**********. *.

102. spacer 2.12|2452860|30|NZ_CP047121|CRT,CRISPRCasFinder,PILER-CR matches to NC_027404 (Yersinia phage PST, complete genome) position: , mismatch: 6, identity: 0.8

acaataatagatgttacgaatatctttatt	CRISPR spacer
aaaataataaatgttgcgaatatcttcttc	Protospacer
* *******.*****.**********. *.

103. spacer 2.12|2452860|30|NZ_CP047121|CRT,CRISPRCasFinder,PILER-CR matches to NC_008515 (Bacteriophage RB32, complete genome) position: , mismatch: 6, identity: 0.8

acaataatagatgttacgaatatctttatt	CRISPR spacer
aaaataataaatgttgcgaatatcttcttc	Protospacer
* *******.*****.**********. *.

104. spacer 2.12|2452860|30|NZ_CP047121|CRT,CRISPRCasFinder,PILER-CR matches to KT184312 (Enterobacteria phage Kha5h, complete genome) position: , mismatch: 6, identity: 0.8

acaataatagatgttacgaatatctttatt	CRISPR spacer
aaaataataaatgttgcgaatatcttcttc	Protospacer
* *******.*****.**********. *.

105. spacer 2.12|2452860|30|NZ_CP047121|CRT,CRISPRCasFinder,PILER-CR matches to HE956711 (Yersinia phage phiD1 complete genome) position: , mismatch: 6, identity: 0.8

acaataatagatgttacgaatatctttatt	CRISPR spacer
aaaataataaatgttgcgaatatcttcttc	Protospacer
* *******.*****.**********. *.

106. spacer 2.12|2452860|30|NZ_CP047121|CRT,CRISPRCasFinder,PILER-CR matches to MG867727 (Escherichia phage vB_EcoM-G28, complete genome) position: , mismatch: 6, identity: 0.8

acaataatagatgttacgaatatctttatt	CRISPR spacer
aaaataataaatgttgcgaatatcttcttc	Protospacer
* *******.*****.**********. *.

107. spacer 2.12|2452860|30|NZ_CP047121|CRT,CRISPRCasFinder,PILER-CR matches to KF925357 (Escherichia phage HY01, complete genome) position: , mismatch: 6, identity: 0.8

acaataatagatgttacgaatatctttatt	CRISPR spacer
aaaataataaatgttgcgaatatcttcttc	Protospacer
* *******.*****.**********. *.

108. spacer 2.12|2452860|30|NZ_CP047121|CRT,CRISPRCasFinder,PILER-CR matches to KR233165 (Escherichia phage PEC04, complete genome) position: , mismatch: 6, identity: 0.8

acaataatagatgttacgaatatctttatt	CRISPR spacer
aaaataataaatgttgcgaatatcttcttc	Protospacer
* *******.*****.**********. *.

109. spacer 2.12|2452860|30|NZ_CP047121|CRT,CRISPRCasFinder,PILER-CR matches to NC_015457 (Shigella phage Shfl2, complete genome) position: , mismatch: 6, identity: 0.8

acaataatagatgttacgaatatctttatt	CRISPR spacer
aaaataataaatgttgcgaatatcttcttc	Protospacer
* *******.*****.**********. *.

110. spacer 2.12|2452860|30|NZ_CP047121|CRT,CRISPRCasFinder,PILER-CR matches to KM607001 (Enterobacteria phage RB33, complete genome) position: , mismatch: 6, identity: 0.8

acaataatagatgttacgaatatctttatt	CRISPR spacer
aaaataataaatgttgcgaatatcttcttc	Protospacer
* *******.*****.**********. *.

111. spacer 2.12|2452860|30|NZ_CP047121|CRT,CRISPRCasFinder,PILER-CR matches to LC348379 (Escherichia phage PP01 DNA, complete sequence) position: , mismatch: 6, identity: 0.8

acaataatagatgttacgaatatctttatt	CRISPR spacer
aaaataataaatgttgcgaatatcttcttc	Protospacer
* *******.*****.**********. *.

112. spacer 2.12|2452860|30|NZ_CP047121|CRT,CRISPRCasFinder,PILER-CR matches to MT968995 (Escherichia phage vB_EcoM_WL-3, complete genome) position: , mismatch: 6, identity: 0.8

acaataatagatgttacgaatatctttatt	CRISPR spacer
aaaataataaatgttgcgaatatcttcttc	Protospacer
* *******.*****.**********. *.

113. spacer 2.12|2452860|30|NZ_CP047121|CRT,CRISPRCasFinder,PILER-CR matches to MK327928 (Escherichia phage vB_EcoM_G2133, complete genome) position: , mismatch: 6, identity: 0.8

acaataatagatgttacgaatatctttatt	CRISPR spacer
aaaataataaatgttgcgaatatcttcttc	Protospacer
* *******.*****.**********. *.

114. spacer 2.12|2452860|30|NZ_CP047121|CRT,CRISPRCasFinder,PILER-CR matches to MT176426 (Serratia phage PhiZZ30, complete genome) position: , mismatch: 6, identity: 0.8

acaataatagatgttacgaatatctttatt	CRISPR spacer
aaaataataaatgttgcgaatatcttcttc	Protospacer
* *******.*****.**********. *.

115. spacer 2.12|2452860|30|NZ_CP047121|CRT,CRISPRCasFinder,PILER-CR matches to KX452698 (UNVERIFIED: Shigella phage KPN5 genomic sequence) position: , mismatch: 6, identity: 0.8

acaataatagatgttacgaatatctttatt	CRISPR spacer
aaaataataaatgttgcgaatatcttcttc	Protospacer
* *******.*****.**********. *.

116. spacer 2.12|2452860|30|NZ_CP047121|CRT,CRISPRCasFinder,PILER-CR matches to NC_031085 (Shigella phage SHBML-50-1, complete genome) position: , mismatch: 6, identity: 0.8

acaataatagatgttacgaatatctttatt	CRISPR spacer
aaaataataaatgttgcgaatatcttcttc	Protospacer
* *******.*****.**********. *.

117. spacer 2.12|2452860|30|NZ_CP047121|CRT,CRISPRCasFinder,PILER-CR matches to KT184308 (Enterobacteria phage Aplg8, complete genome) position: , mismatch: 6, identity: 0.8

acaataatagatgttacgaatatctttatt	CRISPR spacer
aaaataataaatgttgcgaatatcttcttc	Protospacer
* *******.*****.**********. *.

118. spacer 2.12|2452860|30|NZ_CP047121|CRT,CRISPRCasFinder,PILER-CR matches to LR597660 (Escherichia phage T4_ev151 genome assembly, chromosome: 1) position: , mismatch: 6, identity: 0.8

acaataatagatgttacgaatatctttatt	CRISPR spacer
aaaataataaatgttgcgaatatcttcttc	Protospacer
* *******.*****.**********. *.

119. spacer 2.12|2452860|30|NZ_CP047121|CRT,CRISPRCasFinder,PILER-CR matches to MN895434 (Escherichia phage teqhad, complete genome) position: , mismatch: 6, identity: 0.8

acaataatagatgttacgaatatctttatt	CRISPR spacer
aaaataataaatgttgcgaatatcttcttc	Protospacer
* *******.*****.**********. *.

120. spacer 2.12|2452860|30|NZ_CP047121|CRT,CRISPRCasFinder,PILER-CR matches to MH992510 (Escherichia phage vB_EcoM_DalCa, complete genome) position: , mismatch: 6, identity: 0.8

acaataatagatgttacgaatatctttatt	CRISPR spacer
aaaataataaatgttgcgaatatcttcttc	Protospacer
* *******.*****.**********. *.

121. spacer 2.12|2452860|30|NZ_CP047121|CRT,CRISPRCasFinder,PILER-CR matches to KM607003 (Enterobacteria phage RB59, complete genome) position: , mismatch: 6, identity: 0.8

acaataatagatgttacgaatatctttatt	CRISPR spacer
aaaataataaatgttgcgaatatcttcttc	Protospacer
* *******.*****.**********. *.

122. spacer 2.12|2452860|30|NZ_CP047121|CRT,CRISPRCasFinder,PILER-CR matches to LN881729 (Escherichia phage slur04, complete genome) position: , mismatch: 6, identity: 0.8

acaataatagatgttacgaatatctttatt	CRISPR spacer
aaaataataaatgttgcgaatatcttcttc	Protospacer
* *******.*****.**********. *.

123. spacer 2.12|2452860|30|NZ_CP047121|CRT,CRISPRCasFinder,PILER-CR matches to HM997020 (Escherichia phage wV7, complete genome) position: , mismatch: 6, identity: 0.8

acaataatagatgttacgaatatctttatt	CRISPR spacer
aaaataataaatgttgcgaatatcttcttc	Protospacer
* *******.*****.**********. *.

124. spacer 2.12|2452860|30|NZ_CP047121|CRT,CRISPRCasFinder,PILER-CR matches to MT932213 (Escherichia phage VEc74, complete genome) position: , mismatch: 6, identity: 0.8

acaataatagatgttacgaatatctttatt	CRISPR spacer
aaaataataaatgttgcgaatatcttcttc	Protospacer
* *******.*****.**********. *.

125. spacer 2.12|2452860|30|NZ_CP047121|CRT,CRISPRCasFinder,PILER-CR matches to JN202312 (Enterobacteria phage ime09, complete genome) position: , mismatch: 6, identity: 0.8

acaataatagatgttacgaatatctttatt	CRISPR spacer
aaaataataaatgttgcgaatatcttcttc	Protospacer
* *******.*****.**********. *.

126. spacer 2.12|2452860|30|NZ_CP047121|CRT,CRISPRCasFinder,PILER-CR matches to KM606999 (Enterobacteria phage RB10, complete genome) position: , mismatch: 6, identity: 0.8

acaataatagatgttacgaatatctttatt	CRISPR spacer
aaaataataaatgttgcgaatatcttcttc	Protospacer
* *******.*****.**********. *.

127. spacer 2.12|2452860|30|NZ_CP047121|CRT,CRISPRCasFinder,PILER-CR matches to KM606998 (Enterobacteria phage RB9, complete genome) position: , mismatch: 6, identity: 0.8

acaataatagatgttacgaatatctttatt	CRISPR spacer
aaaataataaatgttgcgaatatcttcttc	Protospacer
* *******.*****.**********. *.

128. spacer 2.2|2452200|30|NZ_CP047121|CRT,CRISPRCasFinder matches to MH884508 (Bacillus phage vB_BcoS-136, complete genome) position: , mismatch: 7, identity: 0.767

ctgaaatccttaaatgatcaagttgccaaa	CRISPR spacer
attaaatccttaaatgaaaaagttgcagag	Protospacer
 * **************  ******* .*.

129. spacer 2.4|2452332|30|NZ_CP047121|CRT,CRISPRCasFinder,PILER-CR matches to KY065457 (Streptococcus phage IPP16, complete genome) position: , mismatch: 7, identity: 0.767

agtcaataactttgtataactttttataac	CRISPR spacer
tgtcaataactttttatcactttttgagat	Protospacer
 ************ *** *******. .*.

130. spacer 2.4|2452332|30|NZ_CP047121|CRT,CRISPRCasFinder,PILER-CR matches to MN855969 (Siphoviridae sp. isolate 51, complete genome) position: , mismatch: 7, identity: 0.767

agtcaataactttgtataactttttataac	CRISPR spacer
atctgataactttttataacttttaatatc	Protospacer
* ...******** ********** *** *

131. spacer 2.7|2452530|30|NZ_CP047121|CRT,CRISPRCasFinder,PILER-CR matches to NZ_KU306397 (Corynebacterium glutamicum strain DSM 1412 plasmid pBL90, complete sequence) position: , mismatch: 7, identity: 0.767

catcactgatgtcgatggcatcgttatttt	CRISPR spacer
aattgtcgatgtcgatgtcaccgttatttt	Protospacer
 **....********** **.*********

132. spacer 2.11|2452794|30|NZ_CP047121|CRT,CRISPRCasFinder,PILER-CR matches to MK308676 (Vibrio phage vB_VmeM-Yong MS31, complete genome) position: , mismatch: 7, identity: 0.767

atac-cgttgagtttatcggcggtaattaaa	CRISPR spacer
-tactcgttgagtttatcggcgataacatcg	Protospacer
 *** *****************.***.   .

133. spacer 2.11|2452794|30|NZ_CP047121|CRT,CRISPRCasFinder,PILER-CR matches to MK308675 (Vibrio phage vB_VmeM-Yong XC32, complete genome) position: , mismatch: 7, identity: 0.767

atac-cgttgagtttatcggcggtaattaaa	CRISPR spacer
-tactcgttgagtttatcggcgataacatcg	Protospacer
 *** *****************.***.   .

134. spacer 2.11|2452794|30|NZ_CP047121|CRT,CRISPRCasFinder,PILER-CR matches to MK308677 (Vibrio phage vB_VmeM-Yong MS32, complete genome) position: , mismatch: 7, identity: 0.767

atac-cgttgagtttatcggcggtaattaaa	CRISPR spacer
-tactcgttgagtttatcggcgataacatcg	Protospacer
 *** *****************.***.   .

135. spacer 2.11|2452794|30|NZ_CP047121|CRT,CRISPRCasFinder,PILER-CR matches to MK308674 (Vibrio phage vB_VmeM-Yong XC31, complete genome) position: , mismatch: 7, identity: 0.767

atac-cgttgagtttatcggcggtaattaaa	CRISPR spacer
-tactcgttgagtttatcggcgataacatcg	Protospacer
 *** *****************.***.   .

136. spacer 2.11|2452794|30|NZ_CP047121|CRT,CRISPRCasFinder,PILER-CR matches to NZ_AP017383 (Moraxella osloensis strain KMC41 plasmid pMOSL2, complete sequence) position: , mismatch: 7, identity: 0.767

ataccgttgagtttatcggcggtaattaaa	CRISPR spacer
agtacgatgagtttttcggcggtaatttca	Protospacer
*   ** ******* ************  *

137. spacer 2.12|2452860|30|NZ_CP047121|CRT,CRISPRCasFinder,PILER-CR matches to NZ_CP020439 (Streptococcus equinus strain FDAARGOS_251 plasmid unamed1 sequence) position: , mismatch: 7, identity: 0.767

acaataatagatgttacgaatatctttatt	CRISPR spacer
aaccttatagatattacgaatatctttaaa	Protospacer
*   * ******.***************

138. spacer 2.12|2452860|30|NZ_CP047121|CRT,CRISPRCasFinder,PILER-CR matches to MN480762 (Streptococcus salivarius strain NU10 plasmid pSsal-NU10, complete sequence) position: , mismatch: 7, identity: 0.767

acaataatagatgttacgaatatctttatt	CRISPR spacer
aaccttatagatattacgaatatctttaaa	Protospacer
*   * ******.***************

139. spacer 2.12|2452860|30|NZ_CP047121|CRT,CRISPRCasFinder,PILER-CR matches to NZ_CP018938 (Bacteroides fragilis strain Q1F2 plasmid Q1F2-p1, complete sequence) position: , mismatch: 7, identity: 0.767

acaataatagatgttacgaatatctttatt	CRISPR spacer
gaagtaatcgatgttacgaatatcattacg	Protospacer
. *.**** *************** ***.

140. spacer 2.12|2452860|30|NZ_CP047121|CRT,CRISPRCasFinder,PILER-CR matches to NZ_KT897280 (Clostridium botulinum strain FI1111E1 plasmid pFI1111E1, complete sequence) position: , mismatch: 7, identity: 0.767

acaataatagatgttacgaatatctttatt	CRISPR spacer
acaataataaatgttacgaatgtgaacaat	Protospacer
*********.***********.*   .* *

141. spacer 2.12|2452860|30|NZ_CP047121|CRT,CRISPRCasFinder,PILER-CR matches to NZ_KT897275 (Clostridium botulinum strain IFR 12/29 plasmid p12/29, complete sequence) position: , mismatch: 7, identity: 0.767

acaataatagatgttacgaatatctttatt	CRISPR spacer
acaataataaatgttacgaatgtgaacaat	Protospacer
*********.***********.*   .* *

142. spacer 2.12|2452860|30|NZ_CP047121|CRT,CRISPRCasFinder,PILER-CR matches to NZ_KT897278 (Clostridium botulinum strain FWSKR40E1 plasmid pFWSKR40E1, complete sequence) position: , mismatch: 7, identity: 0.767

acaataatagatgttacgaatatctttatt	CRISPR spacer
acaataataaatgttacgaatgtgaacaat	Protospacer
*********.***********.*   .* *

143. spacer 2.12|2452860|30|NZ_CP047121|CRT,CRISPRCasFinder,PILER-CR matches to NZ_KT897279 (Clostridium botulinum strain SWKR38E2 plasmid pSWKR38E2, complete sequence) position: , mismatch: 7, identity: 0.767

acaataatagatgttacgaatatctttatt	CRISPR spacer
acaataataaatgttacgaatgtgaacaat	Protospacer
*********.***********.*   .* *

144. spacer 2.12|2452860|30|NZ_CP047121|CRT,CRISPRCasFinder,PILER-CR matches to KX171213 (Staphylococcus phage vB_SscM-2, complete genome) position: , mismatch: 7, identity: 0.767

acaataatagatgttacgaatatctttatt	CRISPR spacer
cctgtcatagatgttaccaatatatttatc	Protospacer
 * .* *********** ***** *****.

145. spacer 2.12|2452860|30|NZ_CP047121|CRT,CRISPRCasFinder,PILER-CR matches to NC_047767 (Staphylococcus phage vB_SscM-1, complete genome) position: , mismatch: 7, identity: 0.767

acaataatagatgttacgaatatctttatt	CRISPR spacer
cctgtcatagatgttaccaatatatttatc	Protospacer
 * .* *********** ***** *****.

146. spacer 2.4|2452332|30|NZ_CP047121|CRT,CRISPRCasFinder,PILER-CR matches to NC_048652 (Bacillus phage vB_BsuM-Goe3, complete genome) position: , mismatch: 8, identity: 0.733

agtcaataactttgtataactttttataac	CRISPR spacer
tgtcaataactttttataatttttgcatat	Protospacer
 ************ *****.****    *.

147. spacer 2.4|2452332|30|NZ_CP047121|CRT,CRISPRCasFinder,PILER-CR matches to MN241318 (Enterococcus phage PEf771, complete genome) position: , mismatch: 8, identity: 0.733

agtcaataactttgtataactttttataac	CRISPR spacer
tgtcaataattttgtataagttttttattt	Protospacer
 ********.********* *****    .

148. spacer 2.4|2452332|30|NZ_CP047121|CRT,CRISPRCasFinder,PILER-CR matches to MN043730 (Bacillus phage vB_BveM-Goe7, complete genome) position: , mismatch: 8, identity: 0.733

agtcaataactttgtataactttttataac	CRISPR spacer
tgtcaataactttttataatttttgcatat	Protospacer
 ************ *****.****    *.

149. spacer 2.4|2452332|30|NZ_CP047121|CRT,CRISPRCasFinder,PILER-CR matches to NZ_CP028373 (Campylobacter jejuni subsp. jejuni strain huA17 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.733

agtcaataactttgtataactttttataac	CRISPR spacer
tggtgttaactttggataattttttataaa	Protospacer
 * .. ******** ****.*********

150. spacer 2.4|2452332|30|NZ_CP047121|CRT,CRISPRCasFinder,PILER-CR matches to NZ_CP018901 (Campylobacter coli strain YH502 plasmid pCOS502, complete sequence) position: , mismatch: 8, identity: 0.733

agtcaataactttgtataactttttataac	CRISPR spacer
tggtgttaactttggataattttttataaa	Protospacer
 * .. ******** ****.*********

151. spacer 2.4|2452332|30|NZ_CP047121|CRT,CRISPRCasFinder,PILER-CR matches to NZ_CP040614 (Campylobacter sp. CFSAN093246 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.733

agtcaataactttgtataactttttataac	CRISPR spacer
tggtgttaactttggataattttttataaa	Protospacer
 * .. ******** ****.*********

152. spacer 2.4|2452332|30|NZ_CP047121|CRT,CRISPRCasFinder,PILER-CR matches to NZ_CP014745 (Campylobacter jejuni strain OD267 plasmid pCJDM67 L, complete sequence) position: , mismatch: 8, identity: 0.733

agtcaataactttgtataactttttataac	CRISPR spacer
tggtgttaactttggataattttttataaa	Protospacer
 * .. ******** ****.*********

153. spacer 2.4|2452332|30|NZ_CP047121|CRT,CRISPRCasFinder,PILER-CR matches to NZ_CP017026 (Campylobacter coli plasmid pCC14983A-1, complete sequence) position: , mismatch: 8, identity: 0.733

agtcaataactttgtataactttttataac	CRISPR spacer
tggtgttaactttggataattttttataaa	Protospacer
 * .. ******** ****.*********

154. spacer 2.4|2452332|30|NZ_CP047121|CRT,CRISPRCasFinder,PILER-CR matches to NZ_CP014345 (Campylobacter jejuni strain RM3194 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.733

agtcaataactttgtataactttttataac	CRISPR spacer
tggtgttaactttggataattttttataaa	Protospacer
 * .. ******** ****.*********

155. spacer 2.4|2452332|30|NZ_CP047121|CRT,CRISPRCasFinder,PILER-CR matches to NZ_CP014743 (Campylobacter jejuni strain WP2202 plasmid pCJDM202, complete sequence) position: , mismatch: 8, identity: 0.733

agtcaataactttgtataactttttataac	CRISPR spacer
tggtgttaactttggataattttttataaa	Protospacer
 * .. ******** ****.*********

156. spacer 2.4|2452332|30|NZ_CP047121|CRT,CRISPRCasFinder,PILER-CR matches to NZ_CP044166 (Campylobacter coli strain AR-0416 plasmid pAR-0416) position: , mismatch: 8, identity: 0.733

agtcaataactttgtataactttttataac	CRISPR spacer
tggtgttaactttggataattttttataaa	Protospacer
 * .. ******** ****.*********

157. spacer 2.4|2452332|30|NZ_CP047121|CRT,CRISPRCasFinder,PILER-CR matches to NZ_CP017417 (Campylobacter jejuni strain MTVDSCj13 plasmid pMTVDSCj13-2, complete sequence) position: , mismatch: 8, identity: 0.733

agtcaataactttgtataactttttataac	CRISPR spacer
tggtgttaactttggataattttttataaa	Protospacer
 * .. ******** ****.*********

158. spacer 2.4|2452332|30|NZ_CP047121|CRT,CRISPRCasFinder,PILER-CR matches to NZ_CP025282 (Campylobacter coli strain YH503 plasmid pCOS503, complete sequence) position: , mismatch: 8, identity: 0.733

agtcaataactttgtataactttttataac	CRISPR spacer
tggtgttaactttggataattttttataaa	Protospacer
 * .. ******** ****.*********

159. spacer 2.4|2452332|30|NZ_CP047121|CRT,CRISPRCasFinder,PILER-CR matches to NZ_CP044174 (Campylobacter jejuni strain AR-0412 plasmid pAR-0412, complete sequence) position: , mismatch: 8, identity: 0.733

agtcaataactttgtataactttttataac	CRISPR spacer
tggtgttaactttggataattttttataaa	Protospacer
 * .. ******** ****.*********

160. spacer 2.4|2452332|30|NZ_CP047121|CRT,CRISPRCasFinder,PILER-CR matches to LC121104 (Klebsiella phage K64-1 S2-4 gene for tail fiber protein, complete cds) position: , mismatch: 8, identity: 0.733

agtcaataactttgtataactttttataac	CRISPR spacer
aaaatataaatttgtattactttttatagt	Protospacer
*.   **** ******* **********..

161. spacer 2.4|2452332|30|NZ_CP047121|CRT,CRISPRCasFinder,PILER-CR matches to MG029513 (Staphylococcus phage phiSa2wa_st72, complete genome) position: , mismatch: 8, identity: 0.733

agtcaataactttgtataactttttataac	CRISPR spacer
ttttttgaccttcgtataactttttataac	Protospacer
  *.   * ***.*****************

162. spacer 2.4|2452332|30|NZ_CP047121|CRT,CRISPRCasFinder,PILER-CR matches to KY056620 (Staphylococcus phage P240, complete genome) position: , mismatch: 8, identity: 0.733

agtcaataactttgtataactttttataac	CRISPR spacer
ttttttgaccttcgtataactttttataac	Protospacer
  *.   * ***.*****************

163. spacer 2.4|2452332|30|NZ_CP047121|CRT,CRISPRCasFinder,PILER-CR matches to MT366568 (Staphylococcus phage R4, complete genome) position: , mismatch: 8, identity: 0.733

agtcaataactttgtataactttttataac	CRISPR spacer
ttttttgaccttcgtataactttttataac	Protospacer
  *.   * ***.*****************

164. spacer 2.4|2452332|30|NZ_CP047121|CRT,CRISPRCasFinder,PILER-CR matches to MK801681 (Staphylococcus phage SAP11, complete genome) position: , mismatch: 8, identity: 0.733

agtcaataactttgtataactttttataac	CRISPR spacer
ttttttgaccttcgtataactttttataac	Protospacer
  *.   * ***.*****************

165. spacer 2.4|2452332|30|NZ_CP047121|CRT,CRISPRCasFinder,PILER-CR matches to MK940809 (Staphylococcus phage Sa2wa_st8, complete genome) position: , mismatch: 8, identity: 0.733

agtcaataactttgtataactttttataac	CRISPR spacer
ttttttgaccttcgtataactttttataac	Protospacer
  *.   * ***.*****************

166. spacer 2.4|2452332|30|NZ_CP047121|CRT,CRISPRCasFinder,PILER-CR matches to JQ779023 (Staphylococcus phage SMSAP5, complete genome) position: , mismatch: 8, identity: 0.733

agtcaataactttgtataactttttataac	CRISPR spacer
ttttttgaccttcgtataactttttataac	Protospacer
  *.   * ***.*****************

167. spacer 2.4|2452332|30|NZ_CP047121|CRT,CRISPRCasFinder,PILER-CR matches to EU861005 (Staphylococcus phage phiSauS-IPLA35, complete genome) position: , mismatch: 8, identity: 0.733

agtcaataactttgtataactttttataac	CRISPR spacer
ttttttgaccttcgtataactttttataac	Protospacer
  *.   * ***.*****************

168. spacer 2.4|2452332|30|NZ_CP047121|CRT,CRISPRCasFinder,PILER-CR matches to KT186243 (Staphylococcus phage vB_SauS_phi2, complete genome) position: , mismatch: 8, identity: 0.733

agtcaataactttgtataactttttataac	CRISPR spacer
ttttttgaccttcgtataactttttataac	Protospacer
  *.   * ***.*****************

169. spacer 2.4|2452332|30|NZ_CP047121|CRT,CRISPRCasFinder,PILER-CR matches to AB897757 (Klebsiella phage K64-1 DNA, complete genome) position: , mismatch: 8, identity: 0.733

agtcaataactttgtataactttttataac	CRISPR spacer
aaaatataaatttgtattactttttatagt	Protospacer
*.   **** ******* **********..

170. spacer 2.4|2452332|30|NZ_CP047121|CRT,CRISPRCasFinder,PILER-CR matches to MG029517 (Staphylococcus phage phiSa2wa_st93, complete genome) position: , mismatch: 8, identity: 0.733

agtcaataactttgtataactttttataac	CRISPR spacer
ttttttgaccttcgtataactttttataac	Protospacer
  *.   * ***.*****************

171. spacer 2.4|2452332|30|NZ_CP047121|CRT,CRISPRCasFinder,PILER-CR matches to MG029516 (Staphylococcus phage phiSa2wa_st93mssa, complete genome) position: , mismatch: 8, identity: 0.733

agtcaataactttgtataactttttataac	CRISPR spacer
ttttttgaccttcgtataactttttataac	Protospacer
  *.   * ***.*****************

172. spacer 2.4|2452332|30|NZ_CP047121|CRT,CRISPRCasFinder,PILER-CR matches to MK801680 (Staphylococcus phage SAP8, complete genome) position: , mismatch: 8, identity: 0.733

agtcaataactttgtataactttttataac	CRISPR spacer
ttttttgaccttcgtataactttttataac	Protospacer
  *.   * ***.*****************

173. spacer 2.5|2452398|30|NZ_CP047121|CRT,CRISPRCasFinder,PILER-CR matches to MN694223 (Marine virus AFVG_250M234, complete genome) position: , mismatch: 8, identity: 0.733

ggataaattggcgtatttgcttgcttcgtc	CRISPR spacer
tgagaaagtggcgtatttgcttgccaatta	Protospacer
 ** *** ****************.   *

174. spacer 2.7|2452530|30|NZ_CP047121|CRT,CRISPRCasFinder,PILER-CR matches to NZ_CP016452 (Sinorhizobium sp. RAC02 plasmid pBSY16_1, complete sequence) position: , mismatch: 8, identity: 0.733

catcactgatgtcgatggcatcgttatttt	CRISPR spacer
catcaccgatgtcgagggcatcgccgtcgg	Protospacer
******.******** *******...*.

175. spacer 2.7|2452530|30|NZ_CP047121|CRT,CRISPRCasFinder,PILER-CR matches to NZ_AP022319 (Burkholderia sp. THE68 plasmid BTHE68_p1, complete sequence) position: , mismatch: 8, identity: 0.733

catcactgatgtcgatggcatcgttatttt	CRISPR spacer
cggttctgatgtcgttggcatcgttaagtg	Protospacer
*. . ********* ***********  *

176. spacer 2.7|2452530|30|NZ_CP047121|CRT,CRISPRCasFinder,PILER-CR matches to NZ_CP024314 (Rhizobium sp. NXC24 plasmid pRspNXC24c, complete sequence) position: , mismatch: 8, identity: 0.733

catcactgatgtcgatggcatcgttatttt	CRISPR spacer
tctcaccgatgtcgatggcatcgcaacgct	Protospacer
. ****.****************. *. .*

177. spacer 2.8|2452596|30|NZ_CP047121|CRT,CRISPRCasFinder,PILER-CR matches to NZ_CP012748 (Paraburkholderia caribensis MBA4 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.733

aattgaatcgcacgcgcaatcgccttatga	CRISPR spacer
cgtggaatcgcacgcgccatcgccttggcg	Protospacer
 .* ************* ********.  .

178. spacer 2.12|2452860|30|NZ_CP047121|CRT,CRISPRCasFinder,PILER-CR matches to NZ_CP044456 (Acinetobacter indicus strain B18 plasmid pB18-1, complete sequence) position: , mismatch: 8, identity: 0.733

acaataatagatgttacgaatatctttatt	CRISPR spacer
gcaaaaatagattttacgaatatcaacttc	Protospacer
.*** ******* ***********  . *.

179. spacer 2.12|2452860|30|NZ_CP047121|CRT,CRISPRCasFinder,PILER-CR matches to NZ_CP039144 (Acinetobacter sp. 10FS3-1 plasmid p10FS3-1-1, complete sequence) position: , mismatch: 8, identity: 0.733

acaataatagatgttacgaatatctttatt	CRISPR spacer
gcaaaaatagattttacgaatatcaacttc	Protospacer
.*** ******* ***********  . *.

180. spacer 2.12|2452860|30|NZ_CP047121|CRT,CRISPRCasFinder,PILER-CR matches to MN480763 (Streptococcus salivarius strain YU10 plasmid pSsal-YU10, complete sequence) position: , mismatch: 8, identity: 0.733

acaataatagatgttacgaatatctttatt	CRISPR spacer
agccttgtagatattacgaatatctttaaa	Protospacer
*   * .*****.***************

181. spacer 2.11|2452794|30|NZ_CP047121|CRT,CRISPRCasFinder,PILER-CR matches to NZ_KX753679 (Pasteurella multocida strain RCAD0259 plasmid pRCADGH-2, complete sequence) position: , mismatch: 9, identity: 0.7

ataccgttgagtttatcggcggtaattaaa	CRISPR spacer
taaatattgagtttatcggcggtagtttgg	Protospacer
  * ..******************.** ..

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

367326 : 375890

Synechococcus_phage(33.33%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_035444510.1\|367326_367815_+	5-(carboxyamino)imidazole ribonucleotide mutase	A0A2P0VNU7	Tetraselmis_virus	2.1e-17	48.4
WP_003551727.1\|367795_368929_+	5-(carboxyamino)imidazole ribonucleotide synthase	NA	NA	NA	NA
WP_003551730.1\|368930_369671_+	phosphoribosylaminoimidazolesuccinocarboxamide synthase	H8ZMN3	Synechococcus_phage	3.7e-42	39.6
WP_003551736.1\|369670_369934_+	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA
WP_159298626.1\|369930_370617_+	phosphoribosylformylglycinamidine synthase subunit PurQ	NA	NA	NA	NA
WP_003551740.1\|370609_372844_+	phosphoribosylformylglycinamidine synthase subunit PurL	A6N228	Microbacterium_phage	5.4e-137	40.9
WP_159298627.1\|372828_374274_+	amidophosphoribosyltransferase	A0A0M3SGR2	Mollivirus	2.9e-51	35.0
WP_003551744.1\|374286_375303_+	phosphoribosylformylglycinamidine cyclo-ligase	A0A0E3FC27	Synechococcus_phage	8.9e-63	41.9
WP_003551746.1\|375299_375890_+	phosphoribosylglycinamide formyltransferase	E3SNR5	Prochlorococcus_phage	6.6e-26	36.6

DBSCAN-SWA_2

604649 : 630698

Lactobacillus_phage(52.63%)

terminase,integrase

attL 595802:595817|attR 609742:609757

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
595802:595817	attL	NA	NA	NA	NA
WP_159298636.1\|604649_605807_-\|integrase	tyrosine-type recombinase/integrase	A0A1C8E994	Bacillus_phage	1.4e-27	28.2
WP_159298637.1\|605875_606145_-	hypothetical protein	NA	NA	NA	NA
WP_159298638.1\|606159_606870_-	serine hydrolase	NA	NA	NA	NA
WP_159298639.1\|607513_607714_-	hypothetical protein	NA	NA	NA	NA
WP_159298640.1\|607731_608109_-	large-conductance mechanosensitive channel protein MscL	NA	NA	NA	NA
WP_159298641.1\|608243_609146_-	hypothetical protein	A0A0B5CYL8	Listeria_phage	6.4e-81	52.0
WP_159298642.1\|609293_609674_-	transporter	A0A0P0I7G8	Lactobacillus_phage	1.8e-29	59.6
WP_159298643.1\|609728_610283_-	DUF4352 domain-containing protein	A0A0P0IXE0	Lactobacillus_phage	3.4e-32	56.8
609742:609757	attR	NA	NA	NA	NA
WP_159298644.1\|610353_610842_-	ImmA/IrrE family metallo-endopeptidase	NA	NA	NA	NA
WP_159298645.1\|610762_611173_-	helix-turn-helix domain-containing protein	E9LUL4	Lactobacillus_phage	6.6e-17	42.0
WP_159298646.1\|611321_611546_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_159298647.1\|611593_611773_+	hypothetical protein	NA	NA	NA	NA
WP_008856371.1\|611726_611984_-	hypothetical protein	NA	NA	NA	NA
WP_159298648.1\|612064_612799_+	toxin Bro	A0A1P8BLG3	Lactococcus_phage	3.9e-36	40.8
WP_159298649.1\|612876_613383_+	hypothetical protein	NA	NA	NA	NA
WP_159298650.1\|613386_613686_+	hypothetical protein	NA	NA	NA	NA
WP_159298651.1\|613811_613970_+	hypothetical protein	NA	NA	NA	NA
WP_159298652.1\|614050_614239_+	hypothetical protein	NA	NA	NA	NA
WP_159298653.1\|614240_614798_+	hypothetical protein	A0A0H3U480	Staphylococcus_phage	2.1e-21	34.3
WP_159298654.1\|614794_615502_+	single-stranded DNA-binding protein	Q4ZC23	Staphylococcus_virus	6.0e-34	55.3
WP_159298823.1\|616473_617727_+	helicase DnaB	A8YQM1	Lactobacillus_phage	2.3e-44	31.0
WP_159298655.1\|617704_618112_+	hypothetical protein	NA	NA	NA	NA
WP_159298656.1\|618123_618528_+	single-stranded DNA-binding protein	D6PSU2	Lactobacillus_phage	1.0e-22	42.6
WP_159298657.1\|618543_618774_+	hypothetical protein	NA	NA	NA	NA
WP_159298658.1\|618770_619196_+	DUF1064 domain-containing protein	A0A0P0IJU5	Lactobacillus_phage	6.8e-25	48.8
WP_159298659.1\|619208_619613_+	DNA-packaging protein	K4I239	Lactobacillus_phage	1.0e-14	39.2
WP_159298660.1\|619786_620302_+	hypothetical protein	NA	NA	NA	NA
WP_159298661.1\|620394_620859_+	hypothetical protein	NA	NA	NA	NA
WP_159298662.1\|621531_621807_+	DUF2829 domain-containing protein	A0A0K2FLC4	Brevibacillus_phage	4.7e-11	42.9
WP_159298663.1\|621873_622050_+	hypothetical protein	NA	NA	NA	NA
WP_159298664.1\|622161_622689_+	hypothetical protein	NA	NA	NA	NA
WP_057864305.1\|622830_623133_+	hypothetical protein	NA	NA	NA	NA
WP_159298665.1\|623222_623711_+	helix-turn-helix domain-containing protein	A0A2I7S016	Vibrio_phage	1.8e-13	36.9
WP_159298666.1\|623691_625143_+\|terminase	phage terminase large subunit	A5GYP8	Lactococcus_phage	2.0e-153	56.8
WP_159298667.1\|625154_626600_+	DUF1073 domain-containing protein	D6PSX2	Lactobacillus_phage	3.4e-68	36.9
WP_159298668.1\|626608_627451_+	hypothetical protein	D6PSX3	Lactobacillus_phage	1.7e-22	40.5
WP_159298669.1\|627573_628074_+	LysM peptidoglycan-binding domain-containing protein	NA	NA	NA	NA
WP_159298670.1\|628086_629241_+	DUF2213 domain-containing protein	A8ATG4	Listeria_phage	4.6e-47	48.0
WP_159298671.1\|629240_629747_+	hypothetical protein	NA	NA	NA	NA
WP_149315771.1\|629810_630698_+	DUF2184 domain-containing protein	D6PSX7	Lactobacillus_phage	2.1e-44	36.8

DBSCAN-SWA_3

1608792 : 1617294

Staphylococcus_phage(28.57%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_003553941.1\|1608792_1609068_+	HU family DNA-binding protein	A0A0H3UZA0	Geobacillus_virus	1.2e-25	68.5
WP_003553944.1\|1609054_1610413_+	tetratricopeptide repeat protein	NA	NA	NA	NA
WP_003553945.1\|1610646_1611537_-	YitT family protein	M1Q1P6	Streptococcus_phage	8.9e-59	38.7
WP_003553947.1\|1611701_1612919_+\|tRNA	CCA tRNA nucleotidyltransferase	H7BUW3	unidentified_phage	2.6e-45	51.5
WP_003553949.1\|1612926_1614840_+	ABC-F family ATP-binding cassette domain-containing protein	A0A2K9L3Z8	Tupanvirus	1.9e-50	28.5
WP_035444757.1\|1614858_1615809_+	thymidylate synthase	A0A0N9SH48	Staphylococcus_phage	8.2e-119	61.5
WP_003553953.1\|1615850_1616339_+	dihydrofolate reductase	A0A1Y0SUI9	Pseudomonas_phage	1.3e-16	33.6
WP_003553955.1\|1616445_1617294_+	DegV family protein	A0A0N9SI50	Staphylococcus_phage	4.0e-16	34.4

DBSCAN-SWA_4

2012705 : 2089099

Lactobacillus_phage(45.83%)

capsid,tRNA,integrase,terminase,portal,tail

attL 2041387:2041403|attR 2099784:2099800

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_003554707.1\|2012705_2014112_-\|tRNA	cysteine--tRNA ligase	A0A1V0SAQ2	Catovirus	4.4e-52	30.4
WP_003554708.1\|2014260_2015751_-\|tRNA	glutamate--tRNA ligase	NA	NA	NA	NA
WP_003554712.1\|2015949_2017137_-	PIN/TRAM domain-containing protein	NA	NA	NA	NA
WP_003554714.1\|2017161_2018535_-	DNA repair protein RadA	NA	NA	NA	NA
WP_003554716.1\|2018642_2019182_-	dUTP diphosphatase	J9PV85	Bacillus_phage	1.1e-40	46.9
WP_003554718.1\|2019327_2020011_+	ribose-5-phosphate isomerase RpiA	NA	NA	NA	NA
WP_003554720.1\|2020262_2021597_+	aminopeptidase C	R4TV59	Phaeocystis_globosa_virus	2.1e-67	32.5
WP_035444851.1\|2021781_2022459_-	2,3-diphosphoglycerate-dependent phosphoglycerate mutase	NA	NA	NA	NA
WP_003554724.1\|2022573_2023617_-	EamA family transporter	NA	NA	NA	NA
WP_003554726.1\|2023627_2024575_-	malate transporter	NA	NA	NA	NA
WP_003554727.1\|2024870_2025983_+	LytR family transcriptional regulator	NA	NA	NA	NA
WP_003554729.1\|2026049_2026886_-	PTS mannose/fructose/sorbose transporter family subunit IID	NA	NA	NA	NA
WP_003554731.1\|2026903_2027704_-	PTS mannose transporter subunit IIC	NA	NA	NA	NA
WP_003554733.1\|2027715_2028228_-	PTS sugar transporter subunit IIB	NA	NA	NA	NA
WP_003554735.1\|2028224_2028644_-	PTS sugar transporter subunit IIA	NA	NA	NA	NA
WP_003554737.1\|2028742_2029372_-	HAD family hydrolase	NA	NA	NA	NA
WP_003554739.1\|2029797_2030676_-	homoserine kinase	NA	NA	NA	NA
WP_003554741.1\|2030740_2031202_-	SprT family protein	NA	NA	NA	NA
WP_003554743.1\|2031229_2033398_-	RNA-binding transcriptional accessory protein	NA	NA	NA	NA
WP_003554745.1\|2033841_2034273_-	hypothetical protein	NA	NA	NA	NA
WP_003554746.1\|2034296_2036963_-	calcium-translocating P-type ATPase, PMCA-type	M1IAU8	Acanthocystis_turfacea_Chlorella_virus	2.8e-76	30.9
WP_003554748.1\|2037152_2037986_-	ammonia-dependent NAD(+) synthetase	G3MA24	Bacillus_virus	1.9e-74	55.8
WP_003554750.1\|2037998_2039456_-	nicotinate phosphoribosyltransferase	G3MA18	Bacillus_virus	3.3e-111	45.9
WP_003554752.1\|2039577_2040318_+	WecB/TagA/CpsF family glycosyltransferase	NA	NA	NA	NA
WP_003554758.1\|2040759_2041464_-	GntR family transcriptional regulator	NA	NA	NA	NA
2041387:2041403	attL	NA	NA	NA	NA
WP_003554761.1\|2041493_2042612_-	N-acetylglucosamine-6-phosphate deacetylase	NA	NA	NA	NA
WP_003554764.1\|2042634_2043441_-	pyrroline-5-carboxylate reductase	A0A1X9I6T5	Streptococcus_phage	1.7e-24	29.5
WP_003554766.1\|2043591_2044149_-	VanZ family protein	NA	NA	NA	NA
WP_003554768.1\|2044807_2045179_+	DUF805 domain-containing protein	NA	NA	NA	NA
WP_003554770.1\|2045331_2045604_+	hypothetical protein	NA	NA	NA	NA
WP_159298750.1\|2046175_2046784_+	hypothetical protein	NA	NA	NA	NA
WP_159298751.1\|2047013_2047979_-	hypothetical protein	A0A1W6JN27	Lactococcus_phage	8.8e-52	55.1
WP_159298752.1\|2047968_2048265_-	hypothetical protein	O03941	Lactobacillus_phage	2.2e-06	43.5
WP_084988990.1\|2048274_2048565_-	hypothetical protein	NA	NA	NA	NA
WP_159298753.1\|2048932_2050519_-	hypothetical protein	Q20DB8	Lactobacillus_phage	4.2e-19	32.6
WP_054736204.1\|2050518_2051058_-	DUF2313 domain-containing protein	Q20DB9	Lactobacillus_phage	5.4e-27	37.9
WP_084999038.1\|2051050_2052280_-	hypothetical protein	X2CYG4	Lactobacillus_phage	1.3e-111	50.7
WP_082602331.1\|2052269_2052725_-	DUF2634 domain-containing protein	L0P6H1	Lactobacillus_phage	7.3e-25	45.6
WP_054736199.1\|2052775_2053114_-	DUF2577 domain-containing protein	X2CXE6	Lactobacillus_phage	6.9e-20	42.9
WP_084988982.1\|2053110_2054106_-	hypothetical protein	X2CXX6	Lactobacillus_phage	4.3e-46	35.2
WP_159298754.1\|2054108_2054825_-	hypothetical protein	A9D9W2	Lactobacillus_prophage	4.5e-29	37.4
WP_159298755.1\|2054817_2057865_-	tape measure protein	L0P6G7	Lactobacillus_phage	4.7e-83	52.2
WP_084988979.1\|2058087_2058504_-	hypothetical protein	Q20DC6	Lactobacillus_phage	6.1e-26	44.9
WP_159298756.1\|2058523_2059003_-\|tail	phage tail protein	A9D9V4	Lactobacillus_prophage	5.0e-56	69.3
WP_159298757.1\|2059017_2060460_-\|tail	phage tail protein	Q20DC8	Lactobacillus_phage	9.6e-103	47.4
WP_159298758.1\|2060460_2060604_-	hypothetical protein	X2CY66	Lactobacillus_phage	5.3e-06	52.2
WP_084999034.1\|2060606_2061014_-	hypothetical protein	X2CYG1	Lactobacillus_phage	2.3e-22	41.9
WP_084999033.1\|2061013_2061421_-	HK97 gp10 family phage protein	A0A0A7RVN8	Clostridium_phage	4.3e-16	35.0
WP_084989005.1\|2061420_2061777_-	hypothetical protein	A9D9T8	Lactobacillus_prophage	1.1e-31	57.0
WP_084988974.1\|2061803_2062187_-	hypothetical protein	L0P6D1	Lactobacillus_phage	2.3e-24	44.0
WP_159298759.1\|2062200_2062956_-	hypothetical protein	B8QTT6	Erwinia_phage	1.0e-07	40.9
WP_159298760.1\|2063039_2063954_-\|capsid	capsid protein	Q20DD4	Lactobacillus_phage	4.0e-139	81.9
WP_159298761.1\|2063973_2064525_-\|capsid	phage capsid protein	A9D9T0	Lactobacillus_prophage	2.7e-21	52.2
WP_159298762.1\|2064618_2064798_-	hypothetical protein	NA	NA	NA	NA
WP_159298763.1\|2064790_2066692_-	hypothetical protein	A9D9S7	Lactobacillus_prophage	9.7e-87	46.4
WP_159298764.1\|2066672_2068100_-\|portal	phage portal protein	X2CY64	Lactobacillus_phage	9.7e-148	56.4
WP_159298834.1\|2068090_2069362_-\|terminase	PBSX family phage terminase large subunit	B6CXD2	Clostridium_phage	3.0e-100	45.4
WP_159298765.1\|2069330_2069765_-\|terminase	terminase small subunit	A7J290	Streptococcus_phage	3.8e-31	53.1
WP_159298766.1\|2070259_2070682_-	DUF722 domain-containing protein	E9LUP5	Lactobacillus_phage	8.0e-18	36.0
WP_159298767.1\|2070781_2071360_-	hypothetical protein	E9LUN9	Lactobacillus_phage	2.0e-35	43.5
WP_159298768.1\|2071361_2071598_-	hypothetical protein	NA	NA	NA	NA
WP_159298769.1\|2071762_2072119_-	hypothetical protein	A0A1B1SDX7	Weissella_phage	2.8e-11	36.8
WP_159298770.1\|2072124_2072538_-	hypothetical protein	NA	NA	NA	NA
WP_159298771.1\|2072534_2072915_-	hypothetical protein	NA	NA	NA	NA
WP_159298772.1\|2072889_2073354_-	hypothetical protein	NA	NA	NA	NA
WP_153108238.1\|2073360_2073555_-	helix-turn-helix domain-containing protein	A0A1X9I6I3	Streptococcus_phage	4.5e-08	49.2
WP_153108237.1\|2073706_2073937_+	DUF2188 domain-containing protein	NA	NA	NA	NA
WP_153108236.1\|2074085_2074310_-	hypothetical protein	NA	NA	NA	NA
WP_159298773.1\|2074310_2074628_-	VRR-NUC domain-containing protein	A0A0M7RDN7	Lactobacillus_phage	1.5e-40	74.5
WP_159298774.1\|2074887_2077218_-	DNA primase	A0A0P0IX98	Lactobacillus_phage	4.7e-184	44.5
WP_159298775.1\|2077229_2077754_-	DUF669 domain-containing protein	R4ICE5	Listeria_phage	4.2e-32	42.2
WP_159298776.1\|2077766_2079275_-	DEAD/DEAH box helicase family protein	Q9T0Y3	Lactobacillus_phage	5.6e-130	58.3
WP_159298777.1\|2079207_2079954_-	AAA family ATPase	A0A0P0IJT7	Lactobacillus_phage	2.4e-81	60.4
WP_159298778.1\|2079954_2080812_-	DUF1351 domain-containing protein	A0A141E1Z6	Streptococcus_phage	7.6e-07	24.6
WP_159298779.1\|2080941_2081214_-	hypothetical protein	NA	NA	NA	NA
WP_159298780.1\|2081281_2081710_+	hypothetical protein	NA	NA	NA	NA
WP_159298781.1\|2081690_2081867_-	hypothetical protein	NA	NA	NA	NA
WP_159298782.1\|2082136_2082316_-	DNA-binding protein	NA	NA	NA	NA
WP_159298783.1\|2082328_2082535_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_159298784.1\|2082582_2082795_+	hypothetical protein	NA	NA	NA	NA
WP_159298785.1\|2082763_2083159_-	helix-turn-helix domain-containing protein	Q5YAA4	Bacillus_phage	1.3e-06	36.1
WP_159298786.1\|2083412_2083739_+	helix-turn-helix domain-containing protein	A9D9J6	Lactobacillus_prophage	3.8e-07	32.0
WP_159298787.1\|2083744_2084170_+	hypothetical protein	A0A1B0Y2S4	Lactobacillus_phage	9.0e-17	33.8
WP_159298788.1\|2084474_2085023_+	DUF5067 domain-containing protein	A0A1W6JND4	Staphylococcus_phage	7.8e-05	35.5
WP_159298789.1\|2085193_2086351_+\|integrase	tyrosine-type recombinase/integrase	Q938N9	Temperate_phage	1.3e-46	32.1
WP_003554772.1\|2086722_2087544_-	phosphoesterase	NA	NA	NA	NA
WP_003554774.1\|2087608_2089099_-	peptide MFS transporter	A0A0P0IY73	Acinetobacter_phage	1.3e-78	37.6
2099784:2099800	attR	NA	NA	NA	NA

DBSCAN-SWA_5

2923898 : 2986734

Lactobacillus_virus(33.33%)

protease,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_003555507.1\|2923898_2924759_-\|transposase	IS982 family transposase	NA	NA	NA	NA
WP_003550690.1\|2924925_2926581_+	hypothetical protein	NA	NA	NA	NA
WP_003550692.1\|2926602_2928345_+	hypothetical protein	NA	NA	NA	NA
WP_003550693.1\|2928348_2928714_-	hypothetical protein	NA	NA	NA	NA
WP_003556405.1\|2928906_2929089_+	hypothetical protein	NA	NA	NA	NA
WP_003550695.1\|2929048_2929249_-	hypothetical protein	NA	NA	NA	NA
WP_003550697.1\|2929272_2930520_+	hypothetical protein	NA	NA	NA	NA
WP_003550699.1\|2930594_2931482_-	polysaccharide deacetylase family protein	NA	NA	NA	NA
WP_003550701.1\|2931474_2931780_-	hypothetical protein	NA	NA	NA	NA
WP_003550703.1\|2931779_2932994_-	glycosyltransferase	NA	NA	NA	NA
WP_003550704.1\|2933039_2934152_-	family 20 glycosylhydrolase	NA	NA	NA	NA
WP_003550706.1\|2934430_2935360_+	AEC family transporter	NA	NA	NA	NA
WP_003550708.1\|2935464_2936763_-	D-serine ammonia-lyase	NA	NA	NA	NA
WP_003550710.1\|2936849_2937035_-	hypothetical protein	NA	NA	NA	NA
WP_003550712.1\|2937034_2937712_-	AAA family ATPase	W6JKT0	Anomala_cuprea_entomopoxvirus	8.4e-09	23.4
WP_003550714.1\|2937723_2938485_-	hypothetical protein	NA	NA	NA	NA
WP_003550716.1\|2938611_2939337_-	class I SAM-dependent methyltransferase	A0A097BYE1	Leuconostoc_phage	2.9e-55	47.5
WP_159298815.1\|2939943_2941104_-\|transposase	IS200/IS605 family element transposase accessory protein TnpB	Q5ULQ4	Lactobacillus_virus	2.1e-148	67.4
WP_003550717.1\|2941702_2942446_+	SDR family oxidoreductase	Q06VL0	Trichoplusia_ni_ascovirus	1.2e-19	32.3
WP_080544189.1\|2942652_2943609_+	zinc-binding dehydrogenase	NA	NA	NA	NA
WP_003550720.1\|2943941_2944211_+	hypothetical protein	NA	NA	NA	NA
WP_003550722.1\|2944304_2944709_+	hypothetical protein	NA	NA	NA	NA
WP_003550724.1\|2944748_2945135_+	hypothetical protein	NA	NA	NA	NA
WP_003550725.1\|2945204_2945756_-	adenine phosphoribosyltransferase	NA	NA	NA	NA
WP_003550727.1\|2945756_2946842_-	hypothetical protein	NA	NA	NA	NA
WP_003550729.1\|2947109_2947976_+	DUF3737 family protein	NA	NA	NA	NA
WP_003550730.1\|2947975_2949148_+	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA
WP_003550732.1\|2949641_2951891_+	ribonucleoside-triphosphate reductase, adenosylcobalamin-dependent	S5Y6F2	Mycobacterium_phage	3.0e-79	31.2
WP_003550735.1\|2952121_2952397_+	hypothetical protein	NA	NA	NA	NA
WP_003550737.1\|2952492_2953029_+	cob(I)yrinic acid a,c-diamide adenosyltransferase	NA	NA	NA	NA
WP_003550738.1\|2953043_2953733_+	FadR family transcriptional regulator	NA	NA	NA	NA
WP_003550740.1\|2953802_2955002_+	MFS transporter	NA	NA	NA	NA
WP_003550742.1\|2955078_2956545_+	MFS transporter	NA	NA	NA	NA
WP_003550743.1\|2956594_2957005_+	hypothetical protein	NA	NA	NA	NA
WP_003550746.1\|2957012_2957459_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_003550747.1\|2957715_2958171_-	hypothetical protein	NA	NA	NA	NA
WP_035444157.1\|2958414_2959425_-	type I glyceraldehyde-3-phosphate dehydrogenase	NA	NA	NA	NA
WP_003550750.1\|2959682_2961041_-	FAD-dependent oxidoreductase	NA	NA	NA	NA
WP_003550752.1\|2961351_2961576_+	hypothetical protein	NA	NA	NA	NA
WP_003550754.1\|2961726_2962206_-	hypothetical protein	NA	NA	NA	NA
WP_003550756.1\|2962505_2963906_-	flavocytochrome c	A0A2P0ZL82	Lactobacillus_phage	2.9e-56	33.1
WP_003550759.1\|2964125_2965538_-	class II fumarate hydratase	NA	NA	NA	NA
WP_003550761.1\|2966080_2967841_+	pyruvate oxidase	NA	NA	NA	NA
WP_035444160.1\|2968129_2969290_-\|transposase	IS200/IS605 family element transposase accessory protein TnpB	Q5ULQ4	Lactobacillus_virus	7.1e-149	67.1
WP_003550765.1\|2969886_2970720_+	FAD synthetase family protein	NA	NA	NA	NA
WP_003550766.1\|2971042_2971237_-	hypothetical protein	NA	NA	NA	NA
WP_159298816.1\|2972034_2973195_-\|transposase	IS200/IS605 family element transposase accessory protein TnpB	Q5ULQ4	Lactobacillus_virus	2.2e-134	61.6
WP_003550774.1\|2973912_2974992_+	nickel permease	NA	NA	NA	NA
WP_003550776.1\|2975075_2975954_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_003550777.1\|2976087_2977710_+	NAD-dependent malic enzyme	NA	NA	NA	NA
WP_147605499.1\|2977776_2978256_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_003550785.1\|2978283_2979057_-\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA
WP_003550791.1\|2979184_2979673_-	kinase	NA	NA	NA	NA
WP_003550792.1\|2979949_2980129_+	hypothetical protein	NA	NA	NA	NA
WP_003550793.1\|2980134_2980821_+	ABC transporter ATP-binding protein	A0A2H4UU96	Bodo_saltans_virus	9.7e-05	22.0
WP_159298817.1\|2980817_2981465_+	hypothetical protein	NA	NA	NA	NA
WP_003550803.1\|2981868_2983809_-	S8/S53 family peptidase	NA	NA	NA	NA
WP_003550805.1\|2984028_2984859_+	NlpC/P60 family protein	NA	NA	NA	NA
WP_003550808.1\|2985017_2985215_+	hypothetical protein	NA	NA	NA	NA
WP_003550809.1\|2985534_2986734_+\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

4. NZ_CP047123

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NZ_CP047123_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP047123_1

425-582

Orphan

Consensus_repeat	Method
AAACCCTTGCTACGAGCGGAAGTTCAAAAAATGAACTT	CRISPRCasFinder

1 spacers

csa3

The CRISPR arrays of NZ_CP047123_1

>merge|NZ_CP047123|1|425-582|CRISPRCasFinder
AAACCCTTGCTACGAGCGGAAGTTCAAAAAATGAACTTCCGCGGGAGACCGTTGAAACCCTTGCTACGAGCGGAAGTTCAAAAAATGAACTTCCGCATAAGTTCGTTGACAACAGCTCTCAAACCCTTGCTACGAGCGGAAGTTCAAAAAATGGACTT

>NZ_CP047123|1|1|425-582|CRISPRCasFinder
AAACCCTTGCTACGAGCGGAAGTTCAAAAAATGAACTT	CCGCGGGAGACCGTTGAAACCCTTGCTACGAGCGGAAGTTCAAAAAATGAACTTCCGCATAAGTTCGTTGACAACAGCTCTC
AAACCCTTGCTACGAGCGGAAGTTCAAAAAATGGACTT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP047123.1\|WP_002819873.1\|1378_1660_+\|type-II-toxin-antitoxin-system-RelB/DinJ-family-antitoxin	unknown	unknown	gnl\|CDD\|274102
NZ_CP047123.1\|WP_159298852.1\|2925_4986_+\|MobA/MobL-family-protein	unknown	unknown	gnl\|CDD\|367473
NZ_CP047123.1\|WP_159298851.1\|2145_2424_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP047123.1\|WP_003582109.1\|5987_7283_-\|arsenic-transporter	unknown	unknown	gnl\|CDD\|185342
NZ_CP047123.1\|WP_080485085.1\|1841_2156_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP047123.1\|WP_079111879.1\|7325_9059_-\|arsenical-pump-driving-ATPase	unknown	unknown	gnl\|CDD\|275109
NZ_CP047123.1\|WP_004563097.1\|5176_5593_-\|arsenate-reductase-(thioredoxin)	unknown	unknown	gnl\|CDD\|131738
NZ_CP047123.1\|WP_003582114.1\|9106_9430_-\|winged-helix-turn-helix-transcriptional-regulator	csa3	COG0640_csa3_CAS-I-A	gnl\|CDD\|238042
NZ_CP047123.1\|WP_159298853.1\|5615_5951_-\|arsenite-efflux-transporter-metallochaperone-ArsD	unknown	unknown	gnl\|CDD\|377741
NZ_CP047123.1\|WP_002819869.1\|2446_2656_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP047123.1\|WP_159298852.1\|2925_4986_+\|MobA/MobL-family-protein	gnl\|CDD\|367473	pfam03389, MobA_MobL, MobA/MobL family. This family includes of the MobA protein from the E. coli plasmid RSF1010, and the MobL protein from the Thiobacillus ferrooxidans plasmid PTF1. These sequences are mobilisation proteins, which are essential for specific plasmid transfer.	2.53744e-103
NZ_CP047123.1\|WP_002819873.1\|1378_1660_+\|type-II-toxin-antitoxin-system-RelB/DinJ-family-antitoxin	gnl\|CDD\|274102	TIGR02384, Putative_antitoxin_RelB, addiction module antitoxin, RelB/DinJ family. Plasmids may be maintained stably in bacterial populations through the action of addiction modules, in which a toxin and antidote are encoded in a cassette on the plasmid. In any daughter cell that lacks the plasmid, the toxin persists and is lethal after the antidote protein is depleted. Toxin/antitoxin pairs are also found on main chromosomes, and likely represent selfish DNA. Sequences in the seed for this alignment all were found adjacent to toxin genes. The resulting model appears to describe a narrower set of proteins than pfam04221, although many in the scope of this model are not obviously paired with toxin proteins. Several toxin/antitoxin pairs may occur in a single species. [Cellular processes, Toxin production and resistance, Mobile and extrachromosomal element functions, Other].	2.03159e-12
NZ_CP047123.1\|WP_003582109.1\|5987_7283_-\|arsenic-transporter	gnl\|CDD\|185342	PRK15445, PRK15445, arsenical efflux pump membrane protein ArsB.	0
NZ_CP047123.1\|WP_079111879.1\|7325_9059_-\|arsenical-pump-driving-ATPase	gnl\|CDD\|275109	TIGR04291, Arsenical_pump-driving_ATPase, arsenical pump-driving ATPase. The broader family (TIGR00345) to which the current family belongs consists of transport-energizing ATPases, including to TRC40/GET3 family involved in post-translational insertion of protein C-terminal transmembrane anchors into membranes from the cyotosolic face. This family, however, is restricted to ATPases that energize pumps that export arsenite (or antimonite).	0
NZ_CP047123.1\|WP_004563097.1\|5176_5593_-\|arsenate-reductase-(thioredoxin)	gnl\|CDD\|131738	TIGR02691, Protein_ArsC, arsenate reductase (thioredoxin). This family describes the well-studied thioredoxin-dependent arsenate reductase of Staphylococcus aureaus plasmid pI258 and other mechanistically similar arsenate reductases. The mechanism involves an intramolecular disulfide bond cascade, and aligned members of this family have four absolutely conserved Cys residues. This group of arsenate reductases belongs to the low-molecular weight protein-tyrosine phosphatase family (pfam01451), as does a group of glutathione/glutaredoxin type arsenate reductases (TIGR02689). At least two other, non-homologous groups of arsenate reductases involved in arsenical resistance are also known. This enzyme reduces arsenate to arsenite, which may be more toxic but which is more easily exported. [Cellular processes, Detoxification].	2.91911e-80
NZ_CP047123.1\|WP_159298853.1\|5615_5951_-\|arsenite-efflux-transporter-metallochaperone-ArsD	gnl\|CDD\|377741	pfam06953, ArsD, Arsenical resistance operon trans-acting repressor ArsD. This family consists of several bacterial arsenical resistance operon trans-acting repressor ArsD proteins. ArsD is a trans-acting repressor of the arsRDABC operon that confers resistance to arsenicals and antimonials in Escherichia coli. It possesses two-pairs of vicinal cysteine residues, Cys(12)-Cys(13) and Cys(112)-Cys(113), that potentially form separate binding sites for the metalloids that trigger dissociation of ArsD from the operon. However, as a homodimer it has four vicinal cysteine pairs.	8.93532e-44
NZ_CP047123.1\|WP_003582114.1\|9106_9430_-\|winged-helix-turn-helix-transcriptional-regulator	gnl\|CDD\|238042	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors. ARSR subfamily of helix-turn-helix bacterial transcription regulatory proteins (winged helix topology). Includes several proteins that appear to dissociate from DNA in the presence of metal ions.	2.20554e-23

>NZ_CP047123.1|WP_002819873.1|1378_1660_+|type-II-toxin-antitoxin-system-RelB/DinJ-family-antitoxin
MAVKEKKRVQVKIDKDLADDTEAVLSELGLNPTTAINMFYKRIVANGALPFNASLSEEERANLRFLKATEGTPVTEFKDAKEVADWLNDPDED
>NZ_CP047123.1|WP_080485085.1|1841_2156_+|hypothetical-protein
MKKPSWVDLGNIYRFPKAGLNFKEIGHLSKLDQNKISDFTLDLKSKIRGKGQKIIQQRSSKRKHKESKAELTQRIQKQLKDFAKHNPEIKPKNNPENKNDRPSY
>NZ_CP047123.1|WP_159298851.1|2145_2424_-|hypothetical-protein
MSNQYEKLVEKQARLKQKIEREDFKLRQSKYFENRQARKARSRRLIQKGALLEKYFQADNLSVEQTEELLKIFADYVNAHKPDKLKNDQPNN
>NZ_CP047123.1|WP_002819869.1|2446_2656_-|hypothetical-protein
MSQSNLEKQEAKLKALNQKIKDEKNKIEQRLGKQIISQANLDYANLSNDQIKLLAKQFSEFLKVKSVDH
>NZ_CP047123.1|WP_159298852.1|2925_4986_+|MobA/MobL-family-protein
MAIFHMSFSNISAGKGRSAIASAAYRSGEKLFDDKEGRRYFYARSVIPESFILTPKNAPEWASDREKLWNEVEKNDRKSNSRYAKEFNVALPIELSESEQKELLTKYVQENFVDQGMVADVAIHRDHSDNPHAHVMLTNRPFNPDGSWGLKAKTQYIKDENGKQLLTKSGFPKQRKIWLVDWDKKEKINEWRKNWALSVNQFLAQKNIPDRISEKSFVDQGIQETPTQHEGINSQRKNRKAFNQQVSAQRNAQAKYHNLDEKIRNHEHFDALTDELSFSEKHTISHLSQQLKTYVDLEHLDDKQRMLFNWKNSLLIKHAIGEDVTKQLLTIDQQTTSLAQANQLLNKVVERATKKLYPELDFEQTTAAERRELIKETNSEQTIFKGSELAERLADIRNDLLTQQLLTFTKRPYTSWQLVNQQAQTIEKQLTTVLAKHGHQLDDLKHTDRGMLAAYQPNELEFISKAVKNLRVMREVKAVVQTQYNSILTTAFPDSDLDKLETIDKEQIYTAVVYYDPELKPLSADDLSQLQQQPPVVFTSQQHQAGLNYLLGKIELKDIQNHRLQRVLKHDGTRQLFIGECGQDPKLDHKQIEMVQTRLKQQTTRFDQYKQAQVNDYRAINYHPTSPKNYLMNILDEALMTILYAKNTDYLRKQQLRGLKETEWEMTKKQRQHQTRNRHEDGGMHL
>NZ_CP047123.1|WP_004563097.1|5176_5593_-|arsenate-reductase-(thioredoxin)
MTQIYFLCTGNACRSQMAEGFAKKILGNDWRVASAGVEVHGLNPLAVKVMAEKGIDISQQTSKLIDPDYLLHSDLVVTLCGDARDRCPVTPPTVKKKHWPLPDPALAAGSEQDRIVVFRKVRDQIEQQIIDLAKVGNL
>NZ_CP047123.1|WP_159298853.1|5615_5951_-|arsenite-efflux-transporter-metallochaperone-ArsD
MKKIELFEPAMCCSTGVCGPSVDKELIQTTAIQRYVSVNAQGQAMFIRRNLAQNPDAFVRNPIVAQELKRQGINALPITLVNGQLVKTGEYPTINEFSSYLDMDLVAALVH
>NZ_CP047123.1|WP_003582109.1|5987_7283_-|arsenic-transporter
MQVFFAVGIFLLTLLFVIWQPRGLSIGWTAVGGAILALLFGVVSFKDVGTVTGIVWNATLSFVAIILISLILDQIGFFEWAALHMARWANGHGIRMFILVTTLGAVVAALFANDGAALILTPIVLAMVRALHFDEKQVFPFIIASGFIADTTSLPMIVSNLVNIVSADFFGISFSAYALRMWIPDLFSLLGSIGILYLYFRKALPRKFDATQVAEPSSALKDQRLFKFSWVVLILLLIGYFSSGFLGIPVSFIALSIAAIFLIVGQRSSHVNAMAAIKGAPWNIVFFSIGMYVVVYGLQNVGLTTLLSGVITEIAKGGRFAATMGMGYLAALLSSLMNNMPTVMINALSIKGADVSGLIHHTLVYANIIGSDLGPKITPIGSLATLVWLHVLAQKGVKIKWGTYFKIGIVTTIPVLFITLCGLWLSLSIFG
>NZ_CP047123.1|WP_079111879.1|7325_9059_-|arsenical-pump-driving-ATPase
MMEKYSPQEINLTKYLFFTGKGGVGKTTVASATAISLADAGHRVMIVSTDPASNLQDVFKVSLTNQPKPIPNISGLFAANFDPVIAANEYREQVIQPYRGVLPKEAIQNMAEQLSGSCTVEIAAFNEFANFLTSSKINQQFDYIIFDTAPTGHTLRMLQLPSAWSNYLDKNDRGASCLGQLAGLNDKKAMYQKAVETLGNPQATTLFLVTRPQKGALLEAQRASHELAALNIKNQQLIINGILNQPTDAVSQTIFKQQQADLQNMPVTLDQLPKLAIPLRAYNVLGLANLRLLLKDQQPQITEEPVTASHFPDLDVVVKNLVQSNKKIIFTMGKGGVGKTTVAVQIAQKIAAQHKTVHLATTDPADHLKYFKITSPLIKVSHIDEKKSLKEYQNEVLTTAKKTMKSNDVDYVAEDLRSPCTQEIAVFRAFAELVAQNDSDVVVVDTAPTGHTLLLLNSTQSYAQEVAHTSGSVPQAVVNLLPRLQDPKQTEIVMVTLPEATPVYESMRLDDDLKRASLAHTWWVVNQSMLATQTTDPCLLARVQSEVKWIDQVKELSNNHFAVMQWQPNYEKTLLTV
>NZ_CP047123.1|WP_003582114.1|9106_9430_-|winged-helix-turn-helix-transcriptional-regulator
MDYQNYVQMLKAMADPNRLKIIDLLSCGSLCACDILQHFDFSQPTLSHHMKVLQNAGIVFAVKDGKWQHYSLQKRFVQEFKQNTDQLLAADEHCLCQRSDCEKDVAN

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP047123_1	1.1\|463\|82\|NZ_CP047123\|CRISPRCasFinder	463-544	82	NZ_CP014914	Lactobacillus paracollinoides strain TMW 1.1979 plasmid pL11979-2, complete sequence	8396-8477	22	0.732
NZ_CP047123_1	1.1\|463\|82\|NZ_CP047123\|CRISPRCasFinder	463-544	82	NZ_CP014916	Lactobacillus paracollinoides strain TMW 1.1994 plasmid pL11994-1, complete sequence	856-937	22	0.732
NZ_CP047123_1	1.1\|463\|82\|NZ_CP047123\|CRISPRCasFinder	463-544	82	NZ_CP047123	Lactobacillus hilgardii strain FLUB plasmid unnamed2	463-544	22	0.732
NZ_CP047123_1	1.1\|463\|82\|NZ_CP047123\|CRISPRCasFinder	463-544	82	NZ_CP046661	Lactobacillus plantarum strain 83-18 plasmid p83-18.1, complete sequence	22711-22792	22	0.732
NZ_CP047123_1	1.1\|463\|82\|NZ_CP047123\|CRISPRCasFinder	463-544	82	NZ_CP012290	Pediococcus damnosus strain TMW 2.1535 plasmid pL21535-2, complete sequence	33651-33732	22	0.732
NZ_CP047123_1	1.1\|463\|82\|NZ_CP047123\|CRISPRCasFinder	463-544	82	NZ_CP031177	Lactobacillus brevis strain UCCLB556 plasmid pUCCLB556_C, complete sequence	10808-10889	22	0.732
NZ_CP047123_1	1.1\|463\|82\|NZ_CP047123\|CRISPRCasFinder	463-544	82	NZ_CP030883	Lactobacillus plantarum strain nF1 plasmid unnamed2, complete sequence	23058-23139	23	0.72
NZ_CP047123_1	1.1\|463\|82\|NZ_CP047123\|CRISPRCasFinder	463-544	82	NZ_CP017412	Lactobacillus plantarum strain RI-113 plasmid pRI113_6, complete sequence	13074-13155	23	0.72
NZ_CP047123_1	1.1\|463\|82\|NZ_CP047123\|CRISPRCasFinder	463-544	82	NZ_CP032650	Lactobacillus plantarum strain ZFM4 plasmid unnamed2, complete sequence	8216-8297	23	0.72
NZ_CP047123_1	1.1\|463\|82\|NZ_CP047123\|CRISPRCasFinder	463-544	82	NZ_CP025283	Lactobacillus plantarum subsp. plantarum strain nF1-FD plasmid pnF1FD02, complete sequence	30263-30344	23	0.72
NZ_CP047123_1	1.1\|463\|82\|NZ_CP047123\|CRISPRCasFinder	463-544	82	NZ_CP015967	Lactobacillus plantarum strain LZ206 plasmid LZ206p2, complete sequence	13800-13881	23	0.72
NZ_CP047123_1	1.1\|463\|82\|NZ_CP047123\|CRISPRCasFinder	463-544	82	NC_020820	Lactobacillus brevis KB290 plasmid pKB290-1, complete sequence	20088-20169	23	0.72
NZ_CP047123_1	1.1\|463\|82\|NZ_CP047123\|CRISPRCasFinder	463-544	82	NZ_CP032746	Lactobacillus paraplantarum strain DSM 10667 plasmid unnamed2, complete sequence	676-757	23	0.72
NZ_CP047123_1	1.1\|463\|82\|NZ_CP047123\|CRISPRCasFinder	463-544	82	CP031017	Lactobacillus helveticus isolate NWC_2_3 plasmid pNWC_2_3, complete sequence	6899-6980	23	0.72
NZ_CP047123_1	1.1\|463\|82\|NZ_CP047123\|CRISPRCasFinder	463-544	82	NC_021517	Lactobacillus plantarum 16 plasmid Lp16E, complete sequence	5116-5197	24	0.707
NZ_CP047123_1	1.1\|463\|82\|NZ_CP047123\|CRISPRCasFinder	463-544	82	NZ_CP032634	Lactobacillus sakei strain ZFM220 plasmid unnamed1, complete sequence	41133-41214	33	0.598
NZ_CP047123_1	1.1\|463\|82\|NZ_CP047123\|CRISPRCasFinder	463-544	82	NZ_LT960785	Lactobacillus sakei isolate MFPB19 plasmid 2, complete sequence	3843-3924	33	0.598
NZ_CP047123_1	1.1\|463\|82\|NZ_CP047123\|CRISPRCasFinder	463-544	82	NZ_CP032636	Lactobacillus sakei strain ZFM225 plasmid unnamed1, complete sequence	45577-45658	33	0.598
NZ_CP047123_1	1.1\|463\|82\|NZ_CP047123\|CRISPRCasFinder	463-544	82	NZ_LT960791	Lactobacillus sakei strain J54 plasmid 2, complete sequence	3842-3923	33	0.598
NZ_CP047123_1	1.1\|463\|82\|NZ_CP047123\|CRISPRCasFinder	463-544	82	NZ_CP032653	Lactobacillus sakei strain LZ217 plasmid unnamed1, complete sequence	45599-45680	33	0.598
NZ_CP047123_1	1.1\|463\|82\|NZ_CP047123\|CRISPRCasFinder	463-544	82	NZ_CP025137	Lactobacillus sakei strain WiKim0072 plasmid pLSW72_1, complete sequence	31990-32071	33	0.598
NZ_CP047123_1	1.1\|463\|82\|NZ_CP047123\|CRISPRCasFinder	463-544	82	NZ_CP032641	Lactobacillus sakei strain ZFM229 plasmid unnamed1, complete sequence	12357-12438	33	0.598

1. spacer 1.1|463|82|NZ_CP047123|CRISPRCasFinder matches to NZ_CP014914 (Lactobacillus paracollinoides strain TMW 1.1979 plasmid pL11979-2, complete sequence) position: , mismatch: 22, identity: 0.732

ccgcgggagaccgttgaaacccttgctacgagcggaagttcaaaaaatgaacttccgcat	CRISPR spacer
ccgcgggagaccgttgaaacccttgctacgagcggaagttcaaaaaatgaacttccgcat	Protospacer
************************************************************

2. spacer 1.1|463|82|NZ_CP047123|CRISPRCasFinder matches to NZ_CP014916 (Lactobacillus paracollinoides strain TMW 1.1994 plasmid pL11994-1, complete sequence) position: , mismatch: 22, identity: 0.732

ccgcgggagaccgttgaaacccttgctacgagcggaagttcaaaaaatgaacttccgcat	CRISPR spacer
ccgcgggagaccgttgaaacccttgctacgagcggaagttcaaaaaatgaacttccgcat	Protospacer
************************************************************

3. spacer 1.1|463|82|NZ_CP047123|CRISPRCasFinder matches to NZ_CP047123 (Lactobacillus hilgardii strain FLUB plasmid unnamed2) position: , mismatch: 22, identity: 0.732

ccgcgggagaccgttgaaacccttgctacgagcggaagttcaaaaaatgaacttccgcat	CRISPR spacer
ccgcgggagaccgttgaaacccttgctacgagcggaagttcaaaaaatgaacttccgcat	Protospacer
************************************************************

4. spacer 1.1|463|82|NZ_CP047123|CRISPRCasFinder matches to NZ_CP046661 (Lactobacillus plantarum strain 83-18 plasmid p83-18.1, complete sequence) position: , mismatch: 22, identity: 0.732

ccgcgggagaccgttgaaacccttgctacgagcggaagttcaaaaaatgaacttccgcat	CRISPR spacer
ccgcgggagaccgttgaaacccttgctacgagcggaagttcaaaaaatgaacttccgcat	Protospacer
************************************************************

5. spacer 1.1|463|82|NZ_CP047123|CRISPRCasFinder matches to NZ_CP012290 (Pediococcus damnosus strain TMW 2.1535 plasmid pL21535-2, complete sequence) position: , mismatch: 22, identity: 0.732

ccgcgggagaccgttgaaacccttgctacgagcggaagttcaaaaaatgaacttccgcat	CRISPR spacer
ccgcgggagaccgttgaaacccttgctacgagcggaagttcaaaaaatgaacttccgcat	Protospacer
************************************************************

6. spacer 1.1|463|82|NZ_CP047123|CRISPRCasFinder matches to NZ_CP031177 (Lactobacillus brevis strain UCCLB556 plasmid pUCCLB556_C, complete sequence) position: , mismatch: 22, identity: 0.732

ccgcgggagaccgttgaaacccttgctacgagcggaagttcaaaaaatgaacttccgcat	CRISPR spacer
ccgcgggagaccgttgaaacccttgctacgagcggaagttcaaaaaatgaacttccgcat	Protospacer
************************************************************

7. spacer 1.1|463|82|NZ_CP047123|CRISPRCasFinder matches to NZ_CP030883 (Lactobacillus plantarum strain nF1 plasmid unnamed2, complete sequence) position: , mismatch: 23, identity: 0.72

ccgcgggagaccgttgaaacccttgctacgagcggaagttcaaaaaatgaacttccgcat	CRISPR spacer
ccgcgggagaccgttgaaacccttgctacaagcggaagttcaaaaaatgaacttccgcat	Protospacer
*****************************.******************************

8. spacer 1.1|463|82|NZ_CP047123|CRISPRCasFinder matches to NZ_CP017412 (Lactobacillus plantarum strain RI-113 plasmid pRI113_6, complete sequence) position: , mismatch: 23, identity: 0.72

ccgcgggagaccgttgaaacccttgctacgagcggaagttcaaaaaatgaacttccgcat	CRISPR spacer
ccgcgggagaccgttgaaacccttgctacaagcggaagttcaaaaaatgaacttccgcat	Protospacer
*****************************.******************************

9. spacer 1.1|463|82|NZ_CP047123|CRISPRCasFinder matches to NZ_CP032650 (Lactobacillus plantarum strain ZFM4 plasmid unnamed2, complete sequence) position: , mismatch: 23, identity: 0.72

ccgcgggagaccgttgaaacccttgctacgagcggaagttcaaaaaatgaacttccgcat	CRISPR spacer
ccgcgggagaccgttgaaacccttgctacaagcggaagttcaaaaaatgaacttccgcat	Protospacer
*****************************.******************************

10. spacer 1.1|463|82|NZ_CP047123|CRISPRCasFinder matches to NZ_CP025283 (Lactobacillus plantarum subsp. plantarum strain nF1-FD plasmid pnF1FD02, complete sequence) position: , mismatch: 23, identity: 0.72

ccgcgggagaccgttgaaacccttgctacgagcggaagttcaaaaaatgaacttccgcat	CRISPR spacer
ccgcgggagaccgttgaaacccttgctacaagcggaagttcaaaaaatgaacttccgcat	Protospacer
*****************************.******************************

11. spacer 1.1|463|82|NZ_CP047123|CRISPRCasFinder matches to NZ_CP015967 (Lactobacillus plantarum strain LZ206 plasmid LZ206p2, complete sequence) position: , mismatch: 23, identity: 0.72

ccgcgggagaccgttgaaacccttgctacgagcggaagttcaaaaaatgaacttccgcat	CRISPR spacer
ccgcgggagaccgttgaaacccttgctacaagcggaagttcaaaaaatgaacttccgcat	Protospacer
*****************************.******************************

12. spacer 1.1|463|82|NZ_CP047123|CRISPRCasFinder matches to NC_020820 (Lactobacillus brevis KB290 plasmid pKB290-1, complete sequence) position: , mismatch: 23, identity: 0.72

ccgcgggagaccgttgaaacccttgctacgagcggaagttcaaaaaatgaacttccgcat	CRISPR spacer
ccgcgggagaccgttgaaacccttgctacaagcggaagttcaaaaaatgaacttccgcat	Protospacer
*****************************.******************************

13. spacer 1.1|463|82|NZ_CP047123|CRISPRCasFinder matches to NZ_CP032746 (Lactobacillus paraplantarum strain DSM 10667 plasmid unnamed2, complete sequence) position: , mismatch: 23, identity: 0.72

ccgcgggagaccgttgaaacccttgctacgagcggaagttcaaaaaatgaacttccgcat	CRISPR spacer
ccgcgggagaccgttgaaacccttgctacaagcggaagttcaaaaaatgaacttccgcat	Protospacer
*****************************.******************************

14. spacer 1.1|463|82|NZ_CP047123|CRISPRCasFinder matches to CP031017 (Lactobacillus helveticus isolate NWC_2_3 plasmid pNWC_2_3, complete sequence) position: , mismatch: 23, identity: 0.72

ccgcgggagaccgttgaaacccttgctacgagcggaagttcaaaaaatgaacttccgcat	CRISPR spacer
ccgcgggagaccgttgaaacccttgctacgagcggaagttcaaaaaatggacttccgcat	Protospacer
*************************************************.**********

15. spacer 1.1|463|82|NZ_CP047123|CRISPRCasFinder matches to NC_021517 (Lactobacillus plantarum 16 plasmid Lp16E, complete sequence) position: , mismatch: 24, identity: 0.707

ccgcgggagaccgttgaaacccttgctacgagcggaagttcaaaaaatgaacttccgcat	CRISPR spacer
ccgcgggagaccgttgaaacccttgctacaagcggaagttcaaaaaacgaacttccgcat	Protospacer
*****************************.*****************.************

16. spacer 1.1|463|82|NZ_CP047123|CRISPRCasFinder matches to NZ_CP032634 (Lactobacillus sakei strain ZFM220 plasmid unnamed1, complete sequence) position: , mismatch: 33, identity: 0.598

ccgcgggagaccgttgaaacccttgctacgagcggaagttcaaaaaatgaacttccgcat	CRISPR spacer
ggtcaaaaaagctctcaaacccttgctacgagcggaagttcaaaaaatgaacttccgcat	Protospacer
   *...*.* * .* ********************************************

17. spacer 1.1|463|82|NZ_CP047123|CRISPRCasFinder matches to NZ_LT960785 (Lactobacillus sakei isolate MFPB19 plasmid 2, complete sequence) position: , mismatch: 33, identity: 0.598

ccgcgggagaccgttgaaacccttgctacgagcggaagttcaaaaaatgaacttccgcat	CRISPR spacer
ggtcaaaaaagctctcaaacccttgctacgagcggaagttcaaaaaatgaacttccgcat	Protospacer
   *...*.* * .* ********************************************

18. spacer 1.1|463|82|NZ_CP047123|CRISPRCasFinder matches to NZ_CP032636 (Lactobacillus sakei strain ZFM225 plasmid unnamed1, complete sequence) position: , mismatch: 33, identity: 0.598

ccgcgggagaccgttgaaacccttgctacgagcggaagttcaaaaaatgaacttccgcat	CRISPR spacer
ggtcaaaaaagctctcaaacccttgctacgagcggaagttcaaaaaatgaacttccgcat	Protospacer
   *...*.* * .* ********************************************

19. spacer 1.1|463|82|NZ_CP047123|CRISPRCasFinder matches to NZ_LT960791 (Lactobacillus sakei strain J54 plasmid 2, complete sequence) position: , mismatch: 33, identity: 0.598

ccgcgggagaccgttgaaacccttgctacgagcggaagttcaaaaaatgaacttccgcat	CRISPR spacer
ggtcaaaaaagctctcaaacccttgctacgagcggaagttcaaaaaatgaacttccgcat	Protospacer
   *...*.* * .* ********************************************

20. spacer 1.1|463|82|NZ_CP047123|CRISPRCasFinder matches to NZ_CP032653 (Lactobacillus sakei strain LZ217 plasmid unnamed1, complete sequence) position: , mismatch: 33, identity: 0.598

ccgcgggagaccgttgaaacccttgctacgagcggaagttcaaaaaatgaacttccgcat	CRISPR spacer
ggtcaaaaaagctctcaaacccttgctacgagcggaagttcaaaaaatgaacttccgcat	Protospacer
   *...*.* * .* ********************************************

21. spacer 1.1|463|82|NZ_CP047123|CRISPRCasFinder matches to NZ_CP025137 (Lactobacillus sakei strain WiKim0072 plasmid pLSW72_1, complete sequence) position: , mismatch: 33, identity: 0.598

ccgcgggagaccgttgaaacccttgctacgagcggaagttcaaaaaatgaacttccgcat	CRISPR spacer
ggtcaaaaaagctctcaaacccttgctacgagcggaagttcaaaaaatgaacttccgcat	Protospacer
   *...*.* * .* ********************************************

22. spacer 1.1|463|82|NZ_CP047123|CRISPRCasFinder matches to NZ_CP032641 (Lactobacillus sakei strain ZFM229 plasmid unnamed1, complete sequence) position: , mismatch: 33, identity: 0.598

ccgcgggagaccgttgaaacccttgctacgagcggaagttcaaaaaatgaacttccgcat	CRISPR spacer
ggtcaaaaaagctctcaaacccttgctacgagcggaagttcaaaaaatgaacttccgcat	Protospacer
   *...*.* * .* ********************************************

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site	Prophage annotation

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

5. NZ_CP047124

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NZ_CP047124_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP047124_1

4448-4547

Orphan

Consensus_repeat	Method
CCCTTGATAACAGCGGAACTAAAAATTCTTTAGT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP047124_1

>merge|NZ_CP047124|1|4448-4547|CRISPRCasFinder
CCCTTGATAACAGCGGAACTAAAAATTCTTTAGTTCCAGTAAATTCAACAAACACCGACTGTCAAACCCTTGATAACAGCGGAACTAAAAATTCTTTAGT

>NZ_CP047124|1|1|4448-4547|CRISPRCasFinder
CCCTTGATAACAGCGGAACTAAAAATTCTTTAGT	TCCAGTAAATTCAACAAACACCGACTGTCAAA
CCCTTGATAACAGCGGAACTAAAAATTCTTTAGT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP047124.1\|WP_159298862.1\|1899_2424_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP047124.1\|WP_159298863.1\|2655_2871_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP047124.1\|WP_159298871.1\|14317_14758_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP047124.1\|WP_159298861.1\|998_1649_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP047124.1\|WP_159298870.1\|13392_14180_-\|IS5-family-transposase	unknown	unknown	gnl\|CDD\|379129
NZ_CP047124.1\|WP_159298860.1\|156_972_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|225822
NZ_CP047124.1\|WP_159298867.1\|6863_7229_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP047124.1\|WP_159298872.1\|14956_15133_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP047124.1\|WP_159298869.1\|12714_13161_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP047124.1\|WP_159298868.1\|23423_24210_-\|IS5-family-transposase	unknown	unknown	gnl\|CDD\|379129
NZ_CP047124.1\|WP_159298874.1\|21007_21400_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP047124.1\|WP_159298873.1\|16056_16284_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP047124.1\|WP_159298864.1\|2877_3663_-\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|379293
NZ_CP047124.1\|WP_159298866.1\|5467_6346_+\|replication-initiator-protein-A	unknown	unknown	gnl\|CDD\|375483
NZ_CP047124.1\|WP_159298868.1\|9279_10066_-\|IS5-family-transposase	unknown	unknown	gnl\|CDD\|379129

Protein	Function_ID	Function_description	E-value
NZ_CP047124.1\|WP_159298868.1\|23423_24210_-\|IS5-family-transposase	gnl\|CDD\|379129	pfam13340, DUF4096, Putative transposase of IS4/5 family (DUF4096).	4.48608e-20
NZ_CP047124.1\|WP_159298860.1\|156_972_-\|hypothetical-protein	gnl\|CDD\|225822	COG3284, AcoR, Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription].	0.00431573
NZ_CP047124.1\|WP_159298864.1\|2877_3663_-\|AAA-family-ATPase	gnl\|CDD\|379293	pfam13614, AAA_31, AAA domain. This family includes a wide variety of AAA domains including some that have lost essential nucleotide binding residues in the P-loop.	7.77021e-36
NZ_CP047124.1\|WP_159298866.1\|5467_6346_+\|replication-initiator-protein-A	gnl\|CDD\|375483	pfam18008, Bac_RepA_C, Replication initiator protein A C-terminal domain. This is the C-terminal domain (CTD) that can be found in the conserved replication initiator, RepA,essential for staphylococcal propagation. RepA CTD shared the strongest structural homology to the Enterococcus faecalis DnaD CTD, yet perform distinct functions. RepA CTD shows strong sequence homology between RepA_N plasmids in genus-specific clusters, suggesting that it may perform host-specific functions necessary for replication. The RepA CTD interacts with the host DnaG primase, which binds the replicative helicase. Structural data indicate that the RepA CTD exists as a monomeric entity, flexibly tethered to the DNA-bound NTD.	5.87344e-07
NZ_CP047124.1\|WP_159298870.1\|13392_14180_-\|IS5-family-transposase	gnl\|CDD\|379129	pfam13340, DUF4096, Putative transposase of IS4/5 family (DUF4096).	6.36724e-20
NZ_CP047124.1\|WP_159298868.1\|9279_10066_-\|IS5-family-transposase	gnl\|CDD\|379129	pfam13340, DUF4096, Putative transposase of IS4/5 family (DUF4096).	4.48608e-20

>NZ_CP047124.1|WP_159298864.1|2877_3663_-|AAA-family-ATPase
MNGKTLLNFNFKGGVGKTTLTVMETYLLGQENKKVLLIDFDPQGNATEIMRETYHIILKPKLSLYEGLLRGDLSKSIVSVTDKIDMIPTDWTLSLWIGAVEKVSQTERNILLSRMLLKLKTNYDYIFIDVPPTINVFTNNAIMASDFISIVLQTQKQSYTSSLKTATHLGELREQYDGDFQLVGVILYLMKPRAKVDAEITARAKDFFGEGVFSNSIRTQERVKTFTNEGIRDKDRWDKRAIQMYQMVLNEQLLRIQQLEG
>NZ_CP047124.1|WP_159298863.1|2655_2871_-|hypothetical-protein
MTEDFLNKVSKKASEQLGNLKSPYQFETEKTKTVQVRMSTYKKIKRIAFENDEKIVDVLEKLIHEGLSQRK
>NZ_CP047124.1|WP_159298862.1|1899_2424_-|hypothetical-protein
MSRQAESSKRMINRYQIYRQEKLIGTVMAFPDYVNQIFYLVFNEDDHSFRIKNEDIFIDFQGDKYYITNVERIHYSYHLKFETNSDHNRCQKPQSWINTLAIKTFSFKDIESLLSIVQLEDREQLVSLIAVLKRITIEHKSLKQHDLFQFKDLLDKYNVVEAKLAEFLLNHLVN
>NZ_CP047124.1|WP_159298861.1|998_1649_-|hypothetical-protein
MKPIQYKDKTFTSYQQAADFIGITKTGFAKRYRKYEAGEYDLNDLFYDGNYHLTHLIYYKNQKFSSHAEAAKFIGITSVSFNRRYKKYLRSEISLENLFKKPKYTIYPMPDWHGKIFNSKKEAASYLGISQNTFTQRLRRYYNGDYTLDDIFASDPLELQKKHSKTMAITYNGHTFETQREACQYLGISQSAFSARYHKYLSGELPIDELFRRQKH
>NZ_CP047124.1|WP_159298860.1|156_972_-|hypothetical-protein
MEPIVYKGKRFISYQQAANFLGMTATGFSKRYQKYQSGQFSLAELFNSVGKKTQLQKHKSLTYHGETFINYQEAAKSAGVSQTTFYRRLKKYYADQITLDELFSSVKYQSYELPPYHKKVFENKLMAAKYVGITPTKFTERLKRYHQGIYDIDDLYSRNSTNLRAKQLNTIKLHYQGITFNSYKAAYDYIGISSAAFNGRLKKYLNGEFTIEQLFRSPKHSQGHMIKYHRRTFYSYKEAAQYIGISYNAFNKRLKKYKSNAITLDELFAKT
>NZ_CP047124.1|WP_159298866.1|5467_6346_+|replication-initiator-protein-A
MMQFFKVKESNLNSDLKGGNEILIYSLLEDRMQASTKNKDFFSKKFNDYYVIYTRDELAMKLGVNVSTITEVFKRLVKKGYLVMKHQFNGATKLFLPKFENETNPEANHDNVKREIQRPEIGKPNSSRTPNSNNKQTIYTRDTYPETNSKKIVAITQKEKQAAKRKKLNELEINALSNSLETKAGFSKRTVNMLKALSFNDPKKLYQLSGMVFKAKNVVKKQARNVRNSQLALSFENNNRYEDMAVDLQRIVMTASRSKRSNVEGYIFSSLVNYFQEAVNDYCCHDVQSVIG
>NZ_CP047124.1|WP_159298867.1|6863_7229_+|hypothetical-protein
MNQGHRIETVINGHHVNKNHYFSLKSYQWRVRHHKTVGKKNLAIGQLAWVEVTGQPKPVLVIITGIHTLSEAADRQVARQLKTVKTITTNSVKDLDAITRDNFDQYLAAHPQGDAFYRPKK
>NZ_CP047124.1|WP_159298868.1|9279_10066_-|IS5-family-transposase
MKNYPSNITRQQFELIRPALENFRKRTKPRKYDLYEVFCAVLYVLKTGCQWRQVPGDFPEWRSVYNYYKIWSTKAEPTADSLLEQVLKKIVIARRTYQGRSALTSFIIVDAQSVKNTATAENKGYDAGKKISGIKCHLAVDINGFPQAIHMTRANVSDRDGASAMIALHAMHLRQVQNVLVDGGYSGVNFQLDVASNLNATVQVAKRNELHRFEVMPQRWVVERSFSWLENCRRLWKNCERQLTTSLQMVVLAFLALLLKRF
>NZ_CP047124.1|WP_159298869.1|12714_13161_+|hypothetical-protein
MAAPTAQTDATSATYKTRVADLNAAIAKAAARSYIAPANLNVTDLFSGTQGASFSGSDVMTYLNSKSALKTLKSAVFPSFDDNGTVTWKQFTYTASSANSGTFGSTPVQVIYNYNSSAASLSGSLQRQHLVLLIHLLKLMVKVLNSPL
>NZ_CP047124.1|WP_159298870.1|13392_14180_-|IS5-family-transposase
MKNYPSKITRQQFELIRPALENFRKRTKPRKYDLYEVFCAVLYVLKTGCQWRQVPGDFPEWRSVYNYYKIWSTKAEPTADSLLEQVFKKIVIARRTYQGRSALTSFIIVDAQSVKNTATAENKGYDAGKKISGIKRHLAVDINGFPQAIHMTRANVSDRDGASAMIALHAMHLRQVQNVLVDGGYSGVNFQLDVASNLNATVQVAKRNELHRFEVMPQRWVVERSFSWLENCRRLWKNCERQLTTSLQMVVLAFLALLLKRF
>NZ_CP047124.1|WP_159298871.1|14317_14758_-|hypothetical-protein
MAAKYVGITPTKFTERLKRYHQGIYDIDDLYSRNSTNLRAKQLNTIKLHYQGITFNSYKAAYDYIGISSAAFNGRLKKYLNGEFTIEQLFRSPKHSQGHMIKYHRRTFYSYKEAAQYIGISYNAFNKRLKKYKSNAITLDELFAKT
>NZ_CP047124.1|WP_159298872.1|14956_15133_-|hypothetical-protein
MEPIVYKGKRFISYQQAANFLGMTATGFSKRYQKYQSGQFSLAELFNSVGKKNTITET
>NZ_CP047124.1|WP_159298873.1|16056_16284_-|hypothetical-protein
MAIKTFSFKDIESLLSIVQLEDREQLVSLIAVLKRITIEHKSLKQHDLFQFKDLLDKYNVVEAKLAEFLLNHLVN
>NZ_CP047124.1|WP_159298874.1|21007_21400_+|hypothetical-protein
MNQGHRIETVINGHHVNKNHYFSLKSYQWRVRHHKTVGKKNLAIGQLAWVEVTGQPKPVLVIITGIHTLSEAADRQVARQLKTVKTITTNSVKDLDAITRDNFDQYLAAHPQGDAFYRPKNELTTQNESR
>NZ_CP047124.1|WP_159298868.1|23423_24210_-|IS5-family-transposase
MKNYPSNITRQQFELIRPALENFRKRTKPRKYDLYEVFCAVLYVLKTGCQWRQVPGDFPEWRSVYNYYKIWSTKAEPTADSLLEQVLKKIVIARRTYQGRSALTSFIIVDAQSVKNTATAENKGYDAGKKISGIKCHLAVDINGFPQAIHMTRANVSDRDGASAMIALHAMHLRQVQNVLVDGGYSGVNFQLDVASNLNATVQVAKRNELHRFEVMPQRWVVERSFSWLENCRRLWKNCERQLTTSLQMVVLAFLALLLKRF

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Crispr_ID: NZ_CP047124_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP047124_2

18596-18695

Orphan

Consensus_repeat	Method
CCCTTGATAACAGCGGAACTAAAAATTCTTTAGT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP047124_2

>merge|NZ_CP047124|2|18596-18695|CRISPRCasFinder
CCCTTGATAACAGCGGAACTAAAAATTCTTTAGTTCCAGTAAATTCAACAAACACCGACTGTCAAACCCTTGATAACAGCGGAACTAAAAATTCTTTAGT

>NZ_CP047124|2|2|18596-18695|CRISPRCasFinder
CCCTTGATAACAGCGGAACTAAAAATTCTTTAGT	TCCAGTAAATTCAACAAACACCGACTGTCAAA
CCCTTGATAACAGCGGAACTAAAAATTCTTTAGT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP047124.1\|WP_159298871.1\|14317_14758_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP047124.1\|WP_159298870.1\|13392_14180_-\|IS5-family-transposase	unknown	unknown	gnl\|CDD\|379129
NZ_CP047124.1\|WP_159298867.1\|6863_7229_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP047124.1\|WP_159298872.1\|14956_15133_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP047124.1\|WP_159298875.1\|27533_28299_-\|IS5-family-transposase	unknown	unknown	gnl\|CDD\|379129
NZ_CP047124.1\|WP_159298869.1\|12714_13161_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP047124.1\|WP_159298868.1\|23423_24210_-\|IS5-family-transposase	unknown	unknown	gnl\|CDD\|379129
NZ_CP047124.1\|WP_159298874.1\|21007_21400_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP047124.1\|WP_159298865.1\|4062_5058_+\|plasmid-replication-initiation-protein	unknown	unknown	gnl\|CDD\|375483
NZ_CP047124.1\|WP_159298873.1\|16056_16284_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP047124.1\|WP_159298868.1\|9279_10066_-\|IS5-family-transposase	unknown	unknown	gnl\|CDD\|379129
NZ_CP047124.1\|WP_159298866.1\|5467_6346_+\|replication-initiator-protein-A	unknown	unknown	gnl\|CDD\|375483
NZ_CP047124.1\|WP_159298864.1\|2877_3663_-\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|379293

Protein	Function_ID	Function_description	E-value
NZ_CP047124.1\|WP_159298875.1\|27533_28299_-\|IS5-family-transposase	gnl\|CDD\|379129	pfam13340, DUF4096, Putative transposase of IS4/5 family (DUF4096).	8.91534e-20
NZ_CP047124.1\|WP_159298868.1\|23423_24210_-\|IS5-family-transposase	gnl\|CDD\|379129	pfam13340, DUF4096, Putative transposase of IS4/5 family (DUF4096).	4.48608e-20
NZ_CP047124.1\|WP_159298865.1\|4062_5058_+\|plasmid-replication-initiation-protein	gnl\|CDD\|375483	pfam18008, Bac_RepA_C, Replication initiator protein A C-terminal domain. This is the C-terminal domain (CTD) that can be found in the conserved replication initiator, RepA,essential for staphylococcal propagation. RepA CTD shared the strongest structural homology to the Enterococcus faecalis DnaD CTD, yet perform distinct functions. RepA CTD shows strong sequence homology between RepA_N plasmids in genus-specific clusters, suggesting that it may perform host-specific functions necessary for replication. The RepA CTD interacts with the host DnaG primase, which binds the replicative helicase. Structural data indicate that the RepA CTD exists as a monomeric entity, flexibly tethered to the DNA-bound NTD.	3.50765e-39
NZ_CP047124.1\|WP_159298868.1\|9279_10066_-\|IS5-family-transposase	gnl\|CDD\|379129	pfam13340, DUF4096, Putative transposase of IS4/5 family (DUF4096).	4.48608e-20
NZ_CP047124.1\|WP_159298866.1\|5467_6346_+\|replication-initiator-protein-A	gnl\|CDD\|375483	pfam18008, Bac_RepA_C, Replication initiator protein A C-terminal domain. This is the C-terminal domain (CTD) that can be found in the conserved replication initiator, RepA,essential for staphylococcal propagation. RepA CTD shared the strongest structural homology to the Enterococcus faecalis DnaD CTD, yet perform distinct functions. RepA CTD shows strong sequence homology between RepA_N plasmids in genus-specific clusters, suggesting that it may perform host-specific functions necessary for replication. The RepA CTD interacts with the host DnaG primase, which binds the replicative helicase. Structural data indicate that the RepA CTD exists as a monomeric entity, flexibly tethered to the DNA-bound NTD.	5.87344e-07
NZ_CP047124.1\|WP_159298870.1\|13392_14180_-\|IS5-family-transposase	gnl\|CDD\|379129	pfam13340, DUF4096, Putative transposase of IS4/5 family (DUF4096).	6.36724e-20
NZ_CP047124.1\|WP_159298864.1\|2877_3663_-\|AAA-family-ATPase	gnl\|CDD\|379293	pfam13614, AAA_31, AAA domain. This family includes a wide variety of AAA domains including some that have lost essential nucleotide binding residues in the P-loop.	7.77021e-36

>NZ_CP047124.1|WP_159298873.1|16056_16284_-|hypothetical-protein
MAIKTFSFKDIESLLSIVQLEDREQLVSLIAVLKRITIEHKSLKQHDLFQFKDLLDKYNVVEAKLAEFLLNHLVN
>NZ_CP047124.1|WP_159298872.1|14956_15133_-|hypothetical-protein
MEPIVYKGKRFISYQQAANFLGMTATGFSKRYQKYQSGQFSLAELFNSVGKKNTITET
>NZ_CP047124.1|WP_159298871.1|14317_14758_-|hypothetical-protein
MAAKYVGITPTKFTERLKRYHQGIYDIDDLYSRNSTNLRAKQLNTIKLHYQGITFNSYKAAYDYIGISSAAFNGRLKKYLNGEFTIEQLFRSPKHSQGHMIKYHRRTFYSYKEAAQYIGISYNAFNKRLKKYKSNAITLDELFAKT
>NZ_CP047124.1|WP_159298870.1|13392_14180_-|IS5-family-transposase
MKNYPSKITRQQFELIRPALENFRKRTKPRKYDLYEVFCAVLYVLKTGCQWRQVPGDFPEWRSVYNYYKIWSTKAEPTADSLLEQVFKKIVIARRTYQGRSALTSFIIVDAQSVKNTATAENKGYDAGKKISGIKRHLAVDINGFPQAIHMTRANVSDRDGASAMIALHAMHLRQVQNVLVDGGYSGVNFQLDVASNLNATVQVAKRNELHRFEVMPQRWVVERSFSWLENCRRLWKNCERQLTTSLQMVVLAFLALLLKRF
>NZ_CP047124.1|WP_159298869.1|12714_13161_+|hypothetical-protein
MAAPTAQTDATSATYKTRVADLNAAIAKAAARSYIAPANLNVTDLFSGTQGASFSGSDVMTYLNSKSALKTLKSAVFPSFDDNGTVTWKQFTYTASSANSGTFGSTPVQVIYNYNSSAASLSGSLQRQHLVLLIHLLKLMVKVLNSPL
>NZ_CP047124.1|WP_159298868.1|9279_10066_-|IS5-family-transposase
MKNYPSNITRQQFELIRPALENFRKRTKPRKYDLYEVFCAVLYVLKTGCQWRQVPGDFPEWRSVYNYYKIWSTKAEPTADSLLEQVLKKIVIARRTYQGRSALTSFIIVDAQSVKNTATAENKGYDAGKKISGIKCHLAVDINGFPQAIHMTRANVSDRDGASAMIALHAMHLRQVQNVLVDGGYSGVNFQLDVASNLNATVQVAKRNELHRFEVMPQRWVVERSFSWLENCRRLWKNCERQLTTSLQMVVLAFLALLLKRF
>NZ_CP047124.1|WP_159298867.1|6863_7229_+|hypothetical-protein
MNQGHRIETVINGHHVNKNHYFSLKSYQWRVRHHKTVGKKNLAIGQLAWVEVTGQPKPVLVIITGIHTLSEAADRQVARQLKTVKTITTNSVKDLDAITRDNFDQYLAAHPQGDAFYRPKK
>NZ_CP047124.1|WP_159298866.1|5467_6346_+|replication-initiator-protein-A
MMQFFKVKESNLNSDLKGGNEILIYSLLEDRMQASTKNKDFFSKKFNDYYVIYTRDELAMKLGVNVSTITEVFKRLVKKGYLVMKHQFNGATKLFLPKFENETNPEANHDNVKREIQRPEIGKPNSSRTPNSNNKQTIYTRDTYPETNSKKIVAITQKEKQAAKRKKLNELEINALSNSLETKAGFSKRTVNMLKALSFNDPKKLYQLSGMVFKAKNVVKKQARNVRNSQLALSFENNNRYEDMAVDLQRIVMTASRSKRSNVEGYIFSSLVNYFQEAVNDYCCHDVQSVIG
>NZ_CP047124.1|WP_159298865.1|4062_5058_+|plasmid-replication-initiation-protein
MNQDNFYKVSEVYAETYYQLPKVLFTNDNYKGLSNDAKVAFALLKDRFNYSVRNHWVDEQDNLYFVYTNQALKEILNCSEPKIIKIKKNLETAHLLYQKRIGINQPNRLYLLKPEVTANDVYRQVSSQSLDNSGTKNSLVPVNSTNTDCQTLDNSGTKNSLVNLYKEHKDIDKSRYNIDTQKLDFSTAQFSPAELEKQNKDLVNHANDFLTDEDSGLPVFLEPEAVQLLSFWCRTPKQMRRFIGIILNAKYRVEKDHQDIGVIIPLDDKELKPLMTKALRRYFNALRSNEKHIKNIENYLYGTMQNLFGIWWNKRANKQWKAKHKPKFTDQ
>NZ_CP047124.1|WP_159298864.1|2877_3663_-|AAA-family-ATPase
MNGKTLLNFNFKGGVGKTTLTVMETYLLGQENKKVLLIDFDPQGNATEIMRETYHIILKPKLSLYEGLLRGDLSKSIVSVTDKIDMIPTDWTLSLWIGAVEKVSQTERNILLSRMLLKLKTNYDYIFIDVPPTINVFTNNAIMASDFISIVLQTQKQSYTSSLKTATHLGELREQYDGDFQLVGVILYLMKPRAKVDAEITARAKDFFGEGVFSNSIRTQERVKTFTNEGIRDKDRWDKRAIQMYQMVLNEQLLRIQQLEG
>NZ_CP047124.1|WP_159298874.1|21007_21400_+|hypothetical-protein
MNQGHRIETVINGHHVNKNHYFSLKSYQWRVRHHKTVGKKNLAIGQLAWVEVTGQPKPVLVIITGIHTLSEAADRQVARQLKTVKTITTNSVKDLDAITRDNFDQYLAAHPQGDAFYRPKNELTTQNESR
>NZ_CP047124.1|WP_159298868.1|23423_24210_-|IS5-family-transposase
MKNYPSNITRQQFELIRPALENFRKRTKPRKYDLYEVFCAVLYVLKTGCQWRQVPGDFPEWRSVYNYYKIWSTKAEPTADSLLEQVLKKIVIARRTYQGRSALTSFIIVDAQSVKNTATAENKGYDAGKKISGIKCHLAVDINGFPQAIHMTRANVSDRDGASAMIALHAMHLRQVQNVLVDGGYSGVNFQLDVASNLNATVQVAKRNELHRFEVMPQRWVVERSFSWLENCRRLWKNCERQLTTSLQMVVLAFLALLLKRF
>NZ_CP047124.1|WP_159298875.1|27533_28299_-|IS5-family-transposase
ITRQQFELIRPALENFRKRTKPRKYDLYEVFCAVLYVLKTGCQWRQVPGDFPEWRSVYNYYKIWSTKAEPTADSLLEQVLKKIVIARRTYQGRSALTSFIIVDAQSVKNTATAENKGYDAGKKISGIKRHLAVDINGFPQAIHMTRANVSDRDGASAMIALHAMHLRQVQNVLVDGGYSGVNFQLDVASNLNATVQVAKRNELHRFEVMPQRWVVERSFSWLENCRRLWKNCERQLTTSLQMVVLAFLALLLKRF

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Identity
NZ_CP047124_1	1.1\|4482\|32\|NZ_CP047124\|CRISPRCasFinder	4482-4513	32	NZ_CP047124	Lactobacillus hilgardii strain FLUB plasmid unnamed3	4482-4513	1.0
NZ_CP047124_1	1.1\|4482\|32\|NZ_CP047124\|CRISPRCasFinder	4482-4513	32	NZ_CP047124	Lactobacillus hilgardii strain FLUB plasmid unnamed3	18630-18661	1.0
NZ_CP047124_2	2.1\|18630\|32\|NZ_CP047124\|CRISPRCasFinder	18630-18661	32	NZ_CP047124	Lactobacillus hilgardii strain FLUB plasmid unnamed3	4482-4513	1.0
NZ_CP047124_2	2.1\|18630\|32\|NZ_CP047124\|CRISPRCasFinder	18630-18661	32	NZ_CP047124	Lactobacillus hilgardii strain FLUB plasmid unnamed3	18630-18661	1.0

1. spacer 1.1|4482|32|NZ_CP047124|CRISPRCasFinder matches to NZ_CP047124 (Lactobacillus hilgardii strain FLUB plasmid unnamed3) position: , mismatch: 0, identity: 1.0

tccagtaaattcaacaaacaccgactgtcaaa	CRISPR spacer
tccagtaaattcaacaaacaccgactgtcaaa	Protospacer
********************************

2. spacer 1.1|4482|32|NZ_CP047124|CRISPRCasFinder matches to NZ_CP047124 (Lactobacillus hilgardii strain FLUB plasmid unnamed3) position: , mismatch: 0, identity: 1.0

tccagtaaattcaacaaacaccgactgtcaaa	CRISPR spacer
tccagtaaattcaacaaacaccgactgtcaaa	Protospacer
********************************

3. spacer 2.1|18630|32|NZ_CP047124|CRISPRCasFinder matches to NZ_CP047124 (Lactobacillus hilgardii strain FLUB plasmid unnamed3) position: , mismatch: 0, identity: 1.0

tccagtaaattcaacaaacaccgactgtcaaa	CRISPR spacer
tccagtaaattcaacaaacaccgactgtcaaa	Protospacer
********************************

4. spacer 2.1|18630|32|NZ_CP047124|CRISPRCasFinder matches to NZ_CP047124 (Lactobacillus hilgardii strain FLUB plasmid unnamed3) position: , mismatch: 0, identity: 1.0

tccagtaaattcaacaaacaccgactgtcaaa	CRISPR spacer
tccagtaaattcaacaaacaccgactgtcaaa	Protospacer
********************************

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site	Prophage annotation

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage