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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP047105 Bacillus anthracis strain FDAARGOS_706 plasmid unnamed1 0 crisprs NA 0 0 0 0
NZ_CP047106 Bacillus anthracis strain FDAARGOS_706 plasmid unnamed2 0 crisprs NA 0 0 0 0
NZ_CP047104 Bacillus anthracis strain FDAARGOS_706 chromosome, complete genome 5 crisprs WYL,csa3,DEDDh,cas14j,cas3,c2c9_V-U4,cas14k,DinG 0 1 10 0

Results visualization

1. NZ_CP047104
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP047104_1 478678-478875 Orphan NA
3 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP047104_2 856970-857104 Orphan NA
2 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP047104_3 1025326-1025428 Orphan NA
1 spacers
csa3

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP047104_4 4050309-4050402 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP047104_5 4162814-4162922 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_CP047104_2 2.1|856997|27|NZ_CP047104|CRISPRCasFinder 856997-857023 27 KJ094023 Listeria phage LP-101, complete genome 3876-3902 4 0.852
NZ_CP047104_2 2.1|856997|27|NZ_CP047104|CRISPRCasFinder 856997-857023 27 NC_022766 Bacillus phage Glittering, complete genome 9024-9050 5 0.815
NZ_CP047104_2 2.1|856997|27|NZ_CP047104|CRISPRCasFinder 856997-857023 27 NC_003037 Sinorhizobium meliloti 1021 plasmid pSymA, complete sequence 1229260-1229286 6 0.778
NZ_CP047104_2 2.1|856997|27|NZ_CP047104|CRISPRCasFinder 856997-857023 27 NZ_CP021794 Sinorhizobium meliloti strain USDA1157 plasmid psymA, complete sequence 438058-438084 6 0.778
NZ_CP047104_2 2.1|856997|27|NZ_CP047104|CRISPRCasFinder 856997-857023 27 NZ_CP021809 Sinorhizobium meliloti strain Rm41 plasmid psymA, complete sequence 127169-127195 6 0.778
NZ_CP047104_2 2.1|856997|27|NZ_CP047104|CRISPRCasFinder 856997-857023 27 NC_020527 Sinorhizobium meliloti 2011 plasmid pSymA, complete sequence 1227597-1227623 6 0.778
NZ_CP047104_2 2.1|856997|27|NZ_CP047104|CRISPRCasFinder 856997-857023 27 NZ_CP021798 Sinorhizobium meliloti strain USDA1106 plasmid psymA, complete sequence 850854-850880 6 0.778
NZ_CP047104_2 2.1|856997|27|NZ_CP047104|CRISPRCasFinder 856997-857023 27 NC_017324 Sinorhizobium meliloti BL225C plasmid pSINMEB01, complete sequence 513839-513865 6 0.778
NZ_CP047104_2 2.1|856997|27|NZ_CP047104|CRISPRCasFinder 856997-857023 27 NC_018683 Sinorhizobium meliloti Rm41 plasmid pSYMA, complete sequence 498252-498278 6 0.778

1. spacer 2.1|856997|27|NZ_CP047104|CRISPRCasFinder matches to KJ094023 (Listeria phage LP-101, complete genome) position: , mismatch: 4, identity: 0.852

cgtctttggctcttctggtttctcttc	CRISPR spacer
catttctggctcttctggtttcttttc	Protospacer
*.*.*.*****************.***

2. spacer 2.1|856997|27|NZ_CP047104|CRISPRCasFinder matches to NC_022766 (Bacillus phage Glittering, complete genome) position: , mismatch: 5, identity: 0.815

cgtctttggctcttctggtttctcttc	CRISPR spacer
gttcaatggctcttctggtttctcatc	Protospacer
  **  ****************** **

3. spacer 2.1|856997|27|NZ_CP047104|CRISPRCasFinder matches to NC_003037 (Sinorhizobium meliloti 1021 plasmid pSymA, complete sequence) position: , mismatch: 6, identity: 0.778

cgtctttggctcttctggtttctcttc	CRISPR spacer
cagggttggctcttctggtttctctat	Protospacer
*.   ******************** .

4. spacer 2.1|856997|27|NZ_CP047104|CRISPRCasFinder matches to NZ_CP021794 (Sinorhizobium meliloti strain USDA1157 plasmid psymA, complete sequence) position: , mismatch: 6, identity: 0.778

cgtctttggctcttctggtttctcttc	CRISPR spacer
cagggttggctcttctggtttctctat	Protospacer
*.   ******************** .

5. spacer 2.1|856997|27|NZ_CP047104|CRISPRCasFinder matches to NZ_CP021809 (Sinorhizobium meliloti strain Rm41 plasmid psymA, complete sequence) position: , mismatch: 6, identity: 0.778

cgtctttggctcttctggtttctcttc	CRISPR spacer
cagggttggctcttctggtttctctgt	Protospacer
*.   ******************** .

6. spacer 2.1|856997|27|NZ_CP047104|CRISPRCasFinder matches to NC_020527 (Sinorhizobium meliloti 2011 plasmid pSymA, complete sequence) position: , mismatch: 6, identity: 0.778

cgtctttggctcttctggtttctcttc	CRISPR spacer
cagggttggctcttctggtttctctat	Protospacer
*.   ******************** .

7. spacer 2.1|856997|27|NZ_CP047104|CRISPRCasFinder matches to NZ_CP021798 (Sinorhizobium meliloti strain USDA1106 plasmid psymA, complete sequence) position: , mismatch: 6, identity: 0.778

cgtctttggctcttctggtttctcttc	CRISPR spacer
cagggttggctcttctggtttctctat	Protospacer
*.   ******************** .

8. spacer 2.1|856997|27|NZ_CP047104|CRISPRCasFinder matches to NC_017324 (Sinorhizobium meliloti BL225C plasmid pSINMEB01, complete sequence) position: , mismatch: 6, identity: 0.778

cgtctttggctcttctggtttctcttc	CRISPR spacer
cagggttggctcttctggtttctctat	Protospacer
*.   ******************** .

9. spacer 2.1|856997|27|NZ_CP047104|CRISPRCasFinder matches to NC_018683 (Sinorhizobium meliloti Rm41 plasmid pSYMA, complete sequence) position: , mismatch: 6, identity: 0.778

cgtctttggctcttctggtttctcttc	CRISPR spacer
cagggttggctcttctggtttctctgt	Protospacer
*.   ******************** .

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 1204882 : 1241747 39 Bacillus_phage(31.03%) capsid,holin,terminase,tail,portal,transposase,protease,head NA
DBSCAN-SWA_2 1254085 : 1265639 21 Bacillus_phage(66.67%) integrase attL 1248178:1248194|attR 1271974:1271990
DBSCAN-SWA_3 1502942 : 1548440 63 Bacillus_phage(96.0%) capsid,holin,terminase,tail,portal,integrase,protease,head attL 1505649:1505665|attR 1550231:1550247
DBSCAN-SWA_4 2576241 : 2618473 47 Staphylococcus_phage(26.67%) tRNA,capsid,holin,terminase,portal,integrase,protease,head attL 2566618:2566633|attR 2620924:2620939
DBSCAN-SWA_5 3244629 : 3252578 6 uncultured_virus(33.33%) NA NA
DBSCAN-SWA_6 3283258 : 3291635 8 Synechococcus_phage(33.33%) NA NA
DBSCAN-SWA_7 3432033 : 3462703 46 Bacillus_phage(67.5%) capsid,terminase,tail,integrase,protease,head attL 3436375:3436390|attR 3451039:3451054
DBSCAN-SWA_8 3466591 : 3470459 6 Bacillus_phage(66.67%) NA NA
DBSCAN-SWA_9 4824429 : 4833162 8 Bacillus_phage(66.67%) NA NA
DBSCAN-SWA_10 5142339 : 5149463 9 Bacillus_phage(71.43%) NA NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage