CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP046904	Massilia flava strain DSM 26639 chromosome, complete genome	13 crisprs	DEDDh,csa3,WYL,DinG,cas3,RT	1	1	2	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP046904_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP046904_1

47072-47307

Orphan

Consensus_repeat	Method
CTGACGCACCGCAAGGTGCCGTCACACGGCGGAGCCTGCGCCGC	PILER-CR

2 spacers

DEDDh

The CRISPR arrays of NZ_CP046904_1

>merge|NZ_CP046904|1|47072-47307|PILER-CR
CTGACGCACCTGCTGGTGCCGTCACACGGCGGAGCCTGCGCCGCTTGTTTGCTTAGTATTTCGCACACATCGACACCGCATCAATTCATCCGATGACCACCGCAAGGTGCCGTCACACGGCGGAGCCTGCGCCACGTTTTCGCGCAGCCCCAAGCAGCAACCCGGCAGCACATCACTGACAACCCATCCAGGCTGACGCACCGCACGGTGCCGTCACACGGCGGAGCCTGCGCCGC

>NZ_CP046904|1|1|47072-47307|PILER-CR
CTGACGCACCTGCTGGTGCCGTCACACGGCGGAGCCTGCGCCGC	TTGTTTGCTTAGTATTTCGCACACATCGACACCGCATCAATTCATCCGATGAC
CACCGCAAGGTGCCGTCACACGGCGGAGCCTGCGCCACGTTTTC	GCGCAGCCCCAAGCAGCAACCCGGCAGCACATCACTGACAACCCATCCAGGCTGACG
CACCGCACGGTGCCGTCACACGGCGGAGCCTGCGCCGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP046904.1\|WP_145879481.1\|37054_37825_+\|methyltransferase-domain-containing-protein	unknown	unknown	gnl\|CDD\|369777
NZ_CP046904.1\|WP_145879452.1\|68153_68924_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|176885
NZ_CP046904.1\|WP_145879475.1\|40993_41563_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP046904.1\|WP_145879445.1\|70020_85200_+\|SDR-family-NAD(P)-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|225858
NZ_CP046904.1\|WP_145879462.1\|58176_61797_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|238429
NZ_CP046904.1\|WP_145879476.1\|39262_40549_-\|DUF2254-domain-containing-protein	unknown	unknown	gnl\|CDD\|378351
NZ_CP046904.1\|WP_145879456.1\|65420_66827_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|235124
NZ_CP046904.1\|WP_145879450.1\|68920_69661_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|176885
NZ_CP046904.1\|WP_145879469.1\|44800_45262_-\|DUF305-domain-containing-protein	unknown	unknown	gnl\|CDD\|367619
NZ_CP046904.1\|WP_145879473.1\|41577_43095_+\|BCCT-family-transporter	unknown	unknown	gnl\|CDD\|376718
NZ_CP046904.1\|WP_145879454.1\|66843_68115_+\|GMC-family-oxidoreductase	unknown	unknown	gnl\|CDD\|225186
NZ_CP046904.1\|WP_145879460.1\|61857_64464_+\|MMPL-family-transporter	unknown	unknown	gnl\|CDD\|223964
NZ_CP046904.1\|WP_158206627.1\|46401_46932_+\|UpxY-family-transcription-antiterminator	unknown	unknown	gnl\|CDD\|376769
NZ_CP046904.1\|WP_145879483.1\|36251_37037_-\|hydroxyacylglutathione-hydrolase	unknown	unknown	gnl\|CDD\|274569
NZ_CP046904.1\|WP_145879471.1\|43192_44596_+\|DUF389-domain-containing-protein	unknown	unknown	gnl\|CDD\|377221
NZ_CP046904.1\|WP_145879479.1\|37817_38258_+\|ribonuclease-HI	unknown	unknown	gnl\|CDD\|178927
NZ_CP046904.1\|WP_145879477.1\|38315_39014_+\|DNA-polymerase-III-subunit-epsilon	DEDDh	cd06127_DEDDh_CAS-I	gnl\|CDD\|235574
NZ_CP046904.1\|WP_145879458.1\|64521_65421_+\|outer-membrane-lipoprotein-sorting-protein	unknown	unknown	gnl\|CDD\|319986
NZ_CP046904.1\|WP_158206629.1\|69698_69980_+\|acyl-carrier-protein	unknown	unknown	gnl\|CDD\|223314
NZ_CP046904.1\|WP_158206628.1\|47378_58175_+\|SDR-family-NAD(P)-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|225858

Protein	Function_ID	Function_description	E-value
NZ_CP046904.1\|WP_145879481.1\|37054_37825_+\|methyltransferase-domain-containing-protein	gnl\|CDD\|369777	pfam08241, Methyltransf_11, Methyltransferase domain. Members of this family are SAM dependent methyltransferases.	4.22864e-13
NZ_CP046904.1\|WP_145879452.1\|68153_68924_+\|hypothetical-protein	gnl\|CDD\|176885	cd08876, START_1, Uncharacterized subgroup of the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domain family. Functionally uncharacterized subgroup of the START domain family. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some mammalian members of the START family (STARDs), it is known which lipids bind in this pocket; these include cholesterol (STARD1, -3, -4, and -5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2, -7, and -10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). Mammalian STARDs participate in the control of various cellular processes, including lipid trafficking between intracellular compartments, lipid metabolism, and modulation of signaling events. Mutation or altered expression of STARDs is linked to diseases such as cancer, genetic disorders, and autoimmune disease.	2.13754e-28
NZ_CP046904.1\|WP_145879483.1\|36251_37037_-\|hydroxyacylglutathione-hydrolase	gnl\|CDD\|274569	TIGR03413, GSH_gloB, hydroxyacylglutathione hydrolase. Members of this protein family are hydroxyacylglutathione hydrolase, a detoxification enzyme known as glyoxalase II. It follows lactoylglutathione lyase, or glyoxalase I, and acts to remove the toxic metabolite methylglyoxal and related compounds. This protein belongs to the broader metallo-beta-lactamase family (pfam00753). [Cellular processes, Detoxification].	1.12059e-140
NZ_CP046904.1\|WP_145879445.1\|70020_85200_+\|SDR-family-NAD(P)-dependent-oxidoreductase	gnl\|CDD\|225858	COG3321, COG3321, Polyketide synthase modules and related proteins [Secondary metabolites biosynthesis, transport, and catabolism].	0
NZ_CP046904.1\|WP_145879462.1\|58176_61797_+\|hypothetical-protein	gnl\|CDD\|238429	cd00833, PKS, polyketide synthases (PKSs) polymerize simple fatty acids into a large variety of different products, called polyketides, by successive decarboxylating Claisen condensations. PKSs can be divided into 2 groups, modular type I PKSs consisting of one or more large multifunctional proteins and iterative type II PKSs, complexes of several monofunctional subunits.	2.51873e-144
NZ_CP046904.1\|WP_145879476.1\|39262_40549_-\|DUF2254-domain-containing-protein	gnl\|CDD\|378351	pfam10011, DUF2254, Predicted membrane protein (DUF2254). Members of this family of bacterial proteins comprises various hypothetical and putative membrane proteins. Their exact function, has not, as yet, been defined.	1.65073e-95
NZ_CP046904.1\|WP_145879456.1\|65420_66827_+\|hypothetical-protein	gnl\|CDD\|235124	PRK03427, PRK03427, cell division protein ZipA; Provisional.	0.00176439
NZ_CP046904.1\|WP_145879450.1\|68920_69661_+\|hypothetical-protein	gnl\|CDD\|176885	cd08876, START_1, Uncharacterized subgroup of the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domain family. Functionally uncharacterized subgroup of the START domain family. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some mammalian members of the START family (STARDs), it is known which lipids bind in this pocket; these include cholesterol (STARD1, -3, -4, and -5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2, -7, and -10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). Mammalian STARDs participate in the control of various cellular processes, including lipid trafficking between intracellular compartments, lipid metabolism, and modulation of signaling events. Mutation or altered expression of STARDs is linked to diseases such as cancer, genetic disorders, and autoimmune disease.	5.61971e-24
NZ_CP046904.1\|WP_145879469.1\|44800_45262_-\|DUF305-domain-containing-protein	gnl\|CDD\|367619	pfam03713, DUF305, Domain of unknown function (DUF305). Domain found in small family of bacterial secreted proteins with no known function. Also found in Paramecium bursaria chlorella virus 1. This domain is short and found in one or two copies. The domain has a conserved HH motif that may be functionally important. This domain belongs to the ferritin superfamily. It contains two sequence similar repeats each of which is composed of two alpha helices.	2.06757e-07
NZ_CP046904.1\|WP_145879473.1\|41577_43095_+\|BCCT-family-transporter	gnl\|CDD\|376718	pfam02028, BCCT, BCCT, betaine/carnitine/choline family transporter.	0
NZ_CP046904.1\|WP_145879454.1\|66843_68115_+\|GMC-family-oxidoreductase	gnl\|CDD\|225186	COG2303, BetA, Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism].	1.50134e-16
NZ_CP046904.1\|WP_145879460.1\|61857_64464_+\|MMPL-family-transporter	gnl\|CDD\|223964	COG1033, COG1033, Predicted exporters of the RND superfamily [General function prediction only].	1.15931e-60
NZ_CP046904.1\|WP_158206627.1\|46401_46932_+\|UpxY-family-transcription-antiterminator	gnl\|CDD\|376769	pfam02357, NusG, Transcription termination factor nusG.	6.22239e-23
NZ_CP046904.1\|WP_145879471.1\|43192_44596_+\|DUF389-domain-containing-protein	gnl\|CDD\|377221	pfam04087, DUF389, Domain of unknown function (DUF389). Family of hypothetical bacterial proteins with an undetermined function.	2.67807e-54
NZ_CP046904.1\|WP_145879479.1\|37817_38258_+\|ribonuclease-HI	gnl\|CDD\|178927	PRK00203, rnhA, ribonuclease H; Reviewed.	6.16165e-101
NZ_CP046904.1\|WP_145879477.1\|38315_39014_+\|DNA-polymerase-III-subunit-epsilon	gnl\|CDD\|235574	PRK05711, PRK05711, DNA polymerase III subunit epsilon; Provisional.	3.98622e-136
NZ_CP046904.1\|WP_145879458.1\|64521_65421_+\|outer-membrane-lipoprotein-sorting-protein	gnl\|CDD\|319986	cd16329, LolA_like, proteins similar to periplasmic molecular chaperone LolA, the outer membrane lipoprotein receptor LolB and the periplasmic protein RseB. This family contains uncharacterized proteins similar to the periplasmic molecular chaperone LolA, the outer membrane lipoprotein receptor LolB and the periplasmic protein RseB, all of which have similar unclosed beta-barrel structures that resemble a baseball glove-like scaffold consisting of an 11-stranded antiparallel sheet. There are five Lol proteins (LolA, LolB, LolC, LolD, and LolE) involved in the sorting and membrane localization of lipoprotein and are highly conserved in Gram-negative bacteria. LolA accepts outer membrane (OM)-specific lipoproteins that are released from the inner membrane by the LolCDE complex and transfers them to the OM receptor LolB. It is proposed that the LolA/LolB complex forms a tunnel-like structure, where the hydrophobic insides of LolA and LolB are connected, which enables lipoproteins to transfer from LolA to LolB. RseB exerts a crucial role in modulating the stability of RseA, the transmembrane anti-sigma-factor that is degraded during sigma-E-dependent transcription caused by bacterial envelope stress. Its structural similarity to LolA and LolB suggests that RseA may act as a sensor of periplasmic stress with a dual functionality, detecting mislocalized lipoproteins as well as propagating the signal to induce the sigma-E-response.	5.5642e-44
NZ_CP046904.1\|WP_158206629.1\|69698_69980_+\|acyl-carrier-protein	gnl\|CDD\|223314	COG0236, AcpP, Acyl carrier protein [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism].	9.72543e-05
NZ_CP046904.1\|WP_158206628.1\|47378_58175_+\|SDR-family-NAD(P)-dependent-oxidoreductase	gnl\|CDD\|225858	COG3321, COG3321, Polyketide synthase modules and related proteins [Secondary metabolites biosynthesis, transport, and catabolism].	0

>NZ_CP046904.1|WP_158206627.1|46401_46932_+|UpxY-family-transcription-antiterminator
MHEHCSEYPYSGTGSDPWLVLRTRSRHEKVVESSLEQKQITAYLPKTRVINVKDGRKRVSEMPLFPGYVFVRPRADQYEGIRFIRGSCGLVFADAKPATLPDKDLEAVKLLVDSGATLTVDSDLVVGKRVRITGGPFAGVEGELVSMKNQDLLSINVEMVGSCVRVEVDHEMVAAL
>NZ_CP046904.1|WP_145879469.1|44800_45262_-|DUF305-domain-containing-protein
MASYARFGWMIACSTVIMYGLMYLNTYELEHVHFSQTRAWMALIMGAAMAIVMLGFMLSMYADRRRNTAIFVGACAVFAVSLWLVRSQTTVDDVSYMRAMIPHHSIAIMTSERARIRDARVRRLADGIAATQRKEIAEMEALIADIERNGPQS
>NZ_CP046904.1|WP_145879471.1|43192_44596_+|DUF389-domain-containing-protein
MNAPETHRPSLRAAIAHRFSLLDDKADDAEIDRSLRAGVELSGATPWILMLAILIASVGLNTNSTAVIIGAMLVSPLMGPIVGVGYGIGIFDFALIRRSLANLAIAAGISLLTSTLYFMLTPLAEAQSELLARTTPSLWDVLIALAGGLAGIIGQTRREKSNVIPGVAIATALMPPLCTAGYGLANGNWSVFGGAFYLFSINCVFIAFAAVVVIEFLRLPHRKFVDPARERHVKRALLAIVLLTGLPSIFLAARLVDNEVFSSRAREFVRKEFGAAQVHVIETRVTPGMHDIEVTLIGAPLPPAAIKALEARLPASGLQQARLRVHQVQAEDHKEIDVRSLKADILAEIVRNNQQTLQDKDAALAALREQVASQQAWLKQADAVTREFEAQYPQCGNVLFGQAVPAGSAGAATVPVLSAECRRMPKASEVRRINEWLKVRTGSAEVRLVLAAGRTRIVRLADREPAR
>NZ_CP046904.1|WP_145879473.1|41577_43095_+|BCCT-family-transporter
MQMLLSAGFILLVVLWGILAPRNMAAVFDELLSALTRNFGWLYLWVVLGLVVFAAFVAFSRYGNMKLGGEDDEPEFGVGSWFAMLFAASMGIGLVFWGVAEPVSHYGTAPPGIAPHTPEAANAAMRYVFFHWGVHPWAVYSVVALAIAFFQYRRAGTPLISTVTSALPWRPVRSMAGLFNGLAVVATAFGVAASLGVGALQINSGLHAVFGVDVNTTTQVTIIIVTALVFITSAVTGVEKGIKYLSNFNMAVAALLALAVFLLGPTVAIIDTFTNTLGSYLSEIVRMSLRATPFRESTWVGNWTIFYWAWWISWSPFVGLFIARVSRGRTIREFILGTVLAPSLAAFLWFSVFGGGALYMQIWQHVPLAEAAKADVATALFTMFDAMPFGYVMSVAATLLVLVFFVTSGDSAVLVLGMMSTGGNPHPPNRVKIVWGSLVAGIAVSLLLAGGLKGVQTATILFALPFALVIVLMVISLWRAMREDWIEEVRREREMRRRLREMVTK
>NZ_CP046904.1|WP_145879475.1|40993_41563_+|hypothetical-protein
MPYLVLHNDLATWAIAICIGLVVYASVGIARRVVVKRLRAFAQTTATYLDDLAARVLDATHPLFMLLIGAYVGSHWLSLPESGTVLLSRLAIAALLLQAARWGDVGVQGWLHQYRAQRSALDAASTTTTAALGFVETVYISSTRPITGCTWTSSRPSMSRCSSASNRKGSRLHTRPRPYTLRTQATVPG
>NZ_CP046904.1|WP_145879476.1|39262_40549_-|DUF2254-domain-containing-protein
MRERLRFLLSRLRERLWIKPLLACALSVIGVLLAHLADRLVEGAVPEVTQTSVVELLKIIAASMLAIATFAVASMVSAYASAGQIATARAFPLIVADDVSQNALSTFIGAFIFSIVGISAAMNGYYGPAGRLTLFTLMVVVLVIVVLTFVRWVDRIARLGRIGAIVEKVERATAAALARRQCQPFLGGVPAAAPKEGVPVHGHRIGYVQHVDVARLQRVAAEHDLRVSVAVLPGTYVSPGRPLCHLQCPQYRDVSAAHRAFQQAFTIGTQRQFDDDPRFGLVVLAEIAGRALSPGINDPGTAIGVLGSLQRLLAALSRGGLPDPPTCERVAVPALALDDLFDDAFNAIARDGAGIVEVALRLQRHLGELGREDPALRALARRHADLALRRSEHALGFAPDLHQVRARHAQYWGSSDQSGRDHAAEGRE
>NZ_CP046904.1|WP_145879477.1|38315_39014_+|DNA-polymerase-III-subunit-epsilon
MRQIVLDTETTGINPKLGNRVIEIGCVELVNRKLTGNNFHRYINPDRDSEEGALAVHGLTTEFLSDKPRFHEIVEELREYIRGAEVIIHNAPFDLGFLNHEFRALNLPSFEEHIGGVIDTLVQAKELRPGKRNSLDALCDHYGISNAHRKLHGALLDAELLADVYLAMTRGQNSLGMDVEVEETSTGISLEQVALAEILVVRASADEVAAHEELLNGLDKAMKGTCLWRTAA
>NZ_CP046904.1|WP_145879479.1|37817_38258_+|ribonuclease-HI
MDKVEIFTDGACKGNPGVGGWGALMVAGEAQKELFGGELNTTNNRMELKAVIESLNALKRPCEVVLHTDSQYVQKGISEWIHGWKARGWKTSTKEPVKNADLWQALDVAQAVHKVDWRWVRGHNGHPGNERADMLANRGVDSVRRK
>NZ_CP046904.1|WP_145879481.1|37054_37825_+|methyltransferase-domain-containing-protein
MDSATSEKSIIALDSWLQTPAGSYVRAWEQSRLDELTADIFGYNAVQIGTPQIDALAASRMPHKWLADTVPHPTEVTTGRPVALTLDGTELPFASQSLDLVVLPHVLEYAAEPHQVLREVERVLIPEGQLIICGFNPASLWGLRNVRGRVTGNRYLPPAELISMPRIKDWLKLLNMGVSHSHFGCYAPACRTEHWLARYAFMDRAGARWWPYFGAVYMVQAIKRVKGMRLIGPAWSKKTAKAPVAVPATNKHRKHG
>NZ_CP046904.1|WP_145879483.1|36251_37037_-|hydroxyacylglutathione-hydrolase
MNDTLDVLAVPAFNDNYLWLVHDGHHAAVVDPGDAQPVLAALQAHGLTLTAILLTHHHGDHIGGVPELLQHYPVPVFGPRSDGIEAVTQPLGDGDTITVPGIGMRLTVLDVPGHTKGHIAYFRNVGPPWLFCGDTLFAGGCGRLFEGTPAQMAASLDKLAALPPGTKVFCAHEYTLSNLRFALAVEPENDALHARMADEAAKRERGVPTVPSTIALERATNPFLRYREQRIARSLHDAGKLDAGAPPVAVFAALREWKNHF
>NZ_CP046904.1|WP_158206628.1|47378_58175_+|SDR-family-NAD(P)-dependent-oxidoreductase
MSLEWIESHLKALVATLLPEGASRDVDVQAPFGELGIDSFRVLKIIKALEGDFGVLPKTLLFEHFNIDSLARYFAEHHGAALATRMAAAPQAARRPAAPQPAAMSAPAPASIPVAAPEKTPIRLFERDLPRHPELAAVVAALFERHKNEGCVSRGTRNIAPNLFIGSARKGYFNYSRSNDLILVYAYTGPEDYFAESAAEMQRYCVERGFQLNIFVDAVIEAIDGVPFSATPFGALQRVCDIRNFTLEGGAMRRLRYQVQKFEKVGACRTAEYRCGTDPRVDQDIAAVIDRWCAAKTMVNPLIHIVREEILAGTLHAQHRIFLTYLNDKLQNVILISRMNEQLNGYLMDLEFYGSDMPLGGLEFAIAKIIEQLAAEGCDMLSMGGTYGVRLEASPHADPDVDRILDDLHRQNIFNDEGNLQFKNKFRCENRTIYLCRPAGSGRADNVVDIIMMIADPAKAQTSDEENHNAAPLAATPAAPPSTPAVAPVSMGADIAIAGVPRTHVLARYGYNPLNVPADQVEFDLKTDSWAQLETPFVGKRMRHLRAQLQQSVDVEASLRAMFPFAHNVLTDAGRAADRVFCKAWERKGIVPQNLLFPTSLYHQIDNGFTPCELPEPSAFQTDAATVFKGNVDVDALRQRVERDPAAIAYVCIDLGNNGTGGQGVSLAHLHEVKELLGRHGIALVLDVTRVLENAACVIEHEAGQASRPLWDVARDLLSCADVVIGSLAKDFCIDRGGIIASNDEALLRRCRAVIEREGGGLDVVDRKLAALALADRTHIETQVRRRIAATRSVWTSLAGAGMPVVHPAGGHCVLVDVKRIAAFAGLADPVAAFVAWLFVATGIRAGAHSVGMQKGTALNGLVRLAIPVGMKGEQAEELARRIVAAFADLRDIPEVVPAADAPAGIDVHAEYRLVGYHRPSGAQVEAGEEKAAVVAEQVVQPVPAQPPRDERAAVPIAIVGMSGRYPQARDLDAFWDNLRQGRDCVTDMPAERLARRQPGSRAYRGGFIDDVDRFDSLFFNISPREAEVLDPQERIFLEVAWEALEDAGYYPELLGRDGAPRNVGVFVGAVWAMYQMVGVEEKLAGNDVNPNSFLWSIANRVSFWMNLTGPSMTVDTACSSSLTALHLACAAIQAGDCDSALVGGVNLDLHQHKFDINHAGGALSPDGVCRTFGAGANGYVAGEGAGALFLKPLDRALADRDQVYGVIRGVSVNHGGRTSGYTVPNPKAQGELVAQALSRSGVDPRSIGYVEAHGTGTELGDPIEIAGLRNAFADAQPGSCAIGSVKTNIGHLEAAAGVVGVSKVLLQMKYRQLVPSLHAKEANPYIDFSASPFVVQQRLAPWPERDVDGVRVPLRAGVSSFGAGGANAHVVLESWDIPGGVASPSDLRVFPLSARTEAELREMAQRLRTHLQRDFVRHDLADVAFTLQSGRKSFEHRLAVVASSVDELVDLLGRYVDGRTDSNVLTGQAKQADGIAKLLSGAEQAQFVALLVQGGDPHKLAGLWAGGLLPDCRGFDRGVGRRTSLPTYPFADKRHWIGTGRAIAAATTASQAVLHPLIDSNESTFQQQLFRKTFRADEFFLHDHVVSGVPTLPGTAYLDLARKAGELAAGRPVASVRNVTWVSPLAVRDGVPTEAWVELKPAPDAVLFEVFSTTEDGARRLHAQGKLRYAGPTEPRPDEYIDLAAIRARCTGTIAASEAYPLFGSLGMQYGPSFQVLREVRRGDTEVLGELVLPEARGADFDQFVLHPCLLDAAMQAGVMAQLREPNGEMKVPYSIGEVEILHPLPRTCYSYVTKAGNQRAGGVSREDVAIVDATGKVLARIREAVGVPLAGVHGQAVPDDCETLYYAHDWQAAPLPERQTDVATLLLFDRDDALWQACTARGIDATLVMPGSTYAADGKRVTIDPADPAHYARLIAMLRTQGGLPAKICFAWGDQGEAADAAALQRALELGVYAVMAFCQALLKHKPTGRVQLLYVAGTEPQDEAFNGFARSLRLEQPKFDCKVLQADREAPDALADLVLAELHADAQQDATVRVRDGIRTVRTLRRVASTELAAASDLLKEEGVYLITGGAGGLGLIFADMLARRYRARLVLTGRSQLDEALQRRLDALCALGAEVLYVAADVAQADDVQRVLAEARARFGRIDGIVHAAGVLRDSLLRKKTREQMQAVLAPKVAGTFHLDAATRGDALDFFAMFSSLAALGGNTGQCDYAYANHYMDSFAARREALRAAGQRSGRTVSLNWSLWADGGMKLDEQTELFFRRTLGIRPLATQVGVQAFTQALGAGLPQVAVLEGERAKIEHAWGLATQEVAEEPQQQAAAPLQAPTPAAGGSLVPQVTQALGAIAMDLLKLSADELSYDSILLELGFDSVGLAAFANAVNARYGLDINPVLFFEYPSINAIAGVLAAEHGDAVARVHAVGAPATVAPAAAPVQDSGAGVATSRFAAAPVQPPAAIQPTVADTPADRYAAMPIAIVGIAGTMPRSPDLEAFWDNLKNARDLVSEIPRDRWIWEDHDGNPQKEPNKSYSRWGGFMDEVDKFDPLFFGITPREAEMMDPQQRLFIEAVWRAVEDAGHKVSELSGTRTGLFVGVSSQDYIDVLAENQSALDGYSASGNSHSILANRISYLLNLRGPSAPIDTACSSSLIALHRAIESIHAGNCEMALVGGVQVMLTPVAHISLSAAGMLSTDGKCKTFDKDANGYVRGEGVGAVFIKPLARAEADGDHVYAVIRASAENHGGRVTNLTAPNPKAQAELLTEAYERAGIDPSTVGYIECHGTGTSLGDPIEIQALKKAFADLYRQHGNAAPAAPHCGLSSVKTNIGHLEPAAGIASLLKVLLAMRHREIPALLHFDQLNPYIDLQGSPFYIVDKTVPWQAPRGADGTTLPRRAGVSSFGWGGANAHIVLEEYVPPARAGHDPQGALPIVLSAKNADRLRDHAANLLAWLERHDVALADLAYTLQAGRDAMSERLGFTAASLDEVRSKLHAFVQADGAVPGVLHGRAGRGKDELGLIGDDDIRASVVEQLGAAHKWDRLLELWVKGVELDWAALAGTQGCRRVALPTYPFARERYWVEARPRAAQVQAQAARPGQPAEEAARRMLFEEYWEPRPAGPVRALPADRQTIVFADETQRRLLATADDAGQLAGAVFVYPADAYEQVSERVFRCPVGDVDSLRRVLASVQLAAGQSLGIVHAWARRRGEPGVHALFQLFTAVRDCGRPVAHVTLVGAYDPADVDTCWDHAWIGFERSLKLHLARTRIALLYTSHGETVAQLLDAVHGSGAIWYDGTARKVLACRPLTERHAPPPLKQGGAYLITGGAGALGMKVAQHLATAYRAQLLLVGRRPADARIEGELAALRRAGAVEVHYSALDLGNASAVVAWAEQLPFPLSGVIHAAGVESAQPFYEKTPADIAAVLDPKTAGTLALDAALAREPLDFICCFSSSSALLGDFGACDYAVANRFQMAYARHRALHQDARGRMVVINWPLWQEGGMGMADPAQAAQYLKRTGLEALGTKDGLATWEELLAAPQDQTLVIVGQPARVHTLLERLYAGTPAAMTQTQVPVSPAAPLRLASHQLDQLRQLIKADLLNLQAMEE
>NZ_CP046904.1|WP_145879462.1|58176_61797_+|hypothetical-protein
MTVAANDTVLDAVRAIVGDTIRIGAAKLDIDAEFPELGIDSIIAMELMENLSRHFGIAFTPAQFLTVNSVRELAAFIEGHGTAPATPPAKPGVPPAQFGRLDTLLGTVRSRYGVDLTGRRWESVDQIVDELVSNNLERVLAKVDASSLFAAPPAPAERPASTDIAIVGIACRFPDAPDAATFWRNLMAGHASIREIPKERWDWESCYAPVAEPGKTVSRWGALVDDVDRFDAAFFGIAPQEAALVDPQERLLMQEVYRALQDAAIDPGTLAGTNTGVFVGYEYSGYEQALRRNQERLPGLVCSSASPTYYLANRLSFLFDLRGPSESVNVNCASSAVAINRACLSLAQGESDVAIAGAACLHLAADDYVASTQYGLLSPDGSCGVFDDAANGFTRGEGVAAIVLKRLDTALADGDRVYAVIKASHQNNRGAAGSLSEVKHEAIADVIARCWDKAGVARDAVRYIELNGYAKKWADSFEFEGIRAALGGSGGGKHCALGSLKGNIGHLEPANGIAAVIKVALALHHKRFPATITRRTPSSFIDLGNPSHPLYFADAPIALDDMRDDAGAPVCAGVSSFADSGVNVHIALEEFVARSPAAGVAGGPQLFVLSAQDGARLADYAGVFAAWLEQAGPEVCFADVAHTSQVGRAALPARLAIVAASLDELRGKLALLRERGLDNAGKLESHGIFCHTLGHVGHVPLASLVTERMARAQLELARAEGQWQQVALLWVHGVAMPWQLAWSGLPARRISLPGYPFARERHWYALQEPGAAAQASLVPEVHLPAALSLPEFAVAADTPREPAALLERFLRERTAQLLDCAVADVDPEATFAALGLRSIAIAELVARVNRLLDVNLAPTVVFQHPHAAALAAHLAQAFPDEVAALLDTIAGAELPTHAAVPDILAPMQPHGAGTPLFLVPGADGSTLSLKPLCEALGTGRPLYGLDAQGLDGQCALPASMGDVVAANLAAVRRIQPYGPYRLFGYSNGGVVAFAMARSLMEAGEEVAALYLLDSLCPEQRTATELDLVVDVFSHVMATLGARFDVDMARLEAVAPDERGEYLYRLMMEHGVVLDRQYFLTSYRIATTSERLARAYALAPLPRAVDVHLIRALDAYPDAPADYGWNRYLVAPLTAHDVSANHYAVITAGHAAAVAAVIAAVETPAADDAVDDAVDDAVDGTERPPATKRGKAGNRRRGAPRPVVLES
>NZ_CP046904.1|WP_145879460.1|61857_64464_+|MMPL-family-transporter
MKAHLNRAGQALMHYFDSVPDRVLARKWLVWLLVIGITAFAIAGLGRIRFDMTIEGWFADDDPTIVSMDAFRARFGSDDHLYIVYRAKDGDVFSAQSLAAARALRRDLTERMLQADAHSPLKRIVKITTLDNAPVLKVEDDALVSRNLVPPKIPDGKEELLAIARTAHSQRSLPQQYFSRDHRYGGILVETNFGAIPVDFEARASQSMGTGAGKLDMDSLSMAYDGKAQAGRVKFQPTDLGQYLDFINAVKVTLAKPEFASRFDFHPVGNPASTEYNMQMLQEMGALYMAMLAIMVAVLWFLFRSFSGVLWPALTVVLGAVWTIGIASWLGVTFTAFLILTVAMILVVGIADSIHILSGYEYFRNQGQDHRTALRSSYHSSANACFLTAVTSAVGMLSVLFTPIVPIQVFGATTAAGIFVTFLFSIFALPAMVDLWWARRRPAAQGDRPRKGAALAGLAGRFVPNVGVLVQRALTHVFPFVLKYRYPIAVFWAVVLAICVVGMAQLRIDTDARSMFPREAKIRGDMDIADRTMLGSQSLKVYFDLGQEYALHDPYVLNRIDALQRTIETRYQKYVVRTLSLVDVAKSSYKALNEDRPDMYVVPPTRAALANTFFMFDNSNPSERRKMVSDDYSKAHIDVALRNGGSYEYTRVFQAMQRDIDAATADLKKRYPDAKASVTGLFTLMMQGSDYLSWTSLSEFFWSIVTISVILLLIFGSLKAGIVSVAANAVPVMLTFGLMGLFGVPLDFNTVLIAPIVLGMAVDDTIHFISHYRHEVARDGDMHRALRDTLREAGQAVTYTAMILALGLGVLALSSSPGNANVGIYGALAVLVGWLCELLLTPSVILILGLKFEGKHEPAAGPAHELAA
>NZ_CP046904.1|WP_145879458.1|64521_65421_+|outer-membrane-lipoprotein-sorting-protein
MNIRTIILAAAGCALAAPALATTESMNAQQVAQKYDDELRHDAVTAKLKLSTCGYKVEQAQMRCTERPRERVVENVAKSYGRDIRSMGVLAEPIGDRGIGMLGWEYWDKDKVNDYWMYLPALGKVKRVLSVKDSADSGSYFGTEFYMEDLEEPRLEEYDIKLLREEKVRVLEAGKGYVEVPAYVLEWVPVGRKKETSNYARSLTWIDKDRFVLLRGEYYDHDGRLNKVRTVKNLQQVNHKWLPRQVTMDNLLTRRVSVMDRQAIALNIPVEDEYLSQRALTDQAFRERYLVKYRSFWKE
>NZ_CP046904.1|WP_145879456.1|65420_66827_+|hypothetical-protein
MAKLFAPVAYRLAQSVALGVALATPQALAQVQPQPPQPVSPAPQPQPQAADEVMGISGDDVRPAAPGADKPVQDEGRSGLVPGARFGIRHELAARIREPHSLPNNRTSLRVEYEKYFLDNYYVQLDALETHYWPGDHRANARGETFQESTVRSAFLQYSKGKTSVKVGRQILVWGESDAGAITDVISPRNLSELFFVSLEESRLSQFMATVDQFTPVGDFSFFYVPRARFNKLPEKGTAYALDLTGGLPQERAPHDNLREYGMRWKKTFGSSDVAVMAARLWDNDYAFEVDRTRAPPTFVATPQRFDMLGMSFNLATEKVLYSGEIARKSPRAFLNPATLQTQRKDQLDTSLRAEYTLGNAGNHAVSLEAVNRRVLGWEPGMATTRSSNMFVLGWRNNFINDNLTANWLTVYNQTHTSFQHSLFLTYKVNGRVSVSLDTFYLKVKDRNSELWPYRGQNAAVLRLLYQF
>NZ_CP046904.1|WP_145879454.1|66843_68115_+|GMC-family-oxidoreductase
MKDHPEYDAIVVGSGTAGAMLAREWSRQNKRVLLLERGGDAPLRESVTGFASVIDQVKVGRKLATVRALTKGGSTGLYFGVVNAPPLDVFNALGIDLASDVDALRRELPIAPLPDALLGEQALRLRDGAVALGHAWHKHDMLVDQSRCDGGYSHGALWRARSYVDDAVAQGTRLVTRATVQRVLIENGAAIGVEYRERRHMFSNVVHRAYAGKVVLAAGELATPALLRACGVDGVGRHGFYVNPGYAIYGLVPGMQGRDNFVGSMGCQLDDGIELGDANICRFLYKMMMPAKLKFRHAVAYPQAIAIGVKVKDGLGGELRADGGLHKELSEADFAKLKKGEEEALRILRQAGAQHIFNFGLSCAGRVGGLLRIGEHVDARMESPVRNLHVCDGSIIPDEMRGTPTLTVLAMARYLARQLAPAL
>NZ_CP046904.1|WP_145879452.1|68153_68924_+|hypothetical-protein
MTATTMQPAAQDAVPEAAAPAASRSRRVLRAAGYGVAGLVVAFHAANVLWKMSGSGKWELEFERDGVQVYSLKAPGAENKQFKAVTRAGYTLNQLVGGLIENATPQNCRDNIPGCLGMQVVVPWSAKTMSDTVLWRLGLPGPFAPREMILRSQVVQDPRTRAVTVNILAAPNALPRNPGTVRVTHLQNRWVYKPVGYGKVEIEFLQDIDIGGMFPTILLNLGGAEQTWQFIHDQLPKLLNTDKLRTIRYDFIKEAA
>NZ_CP046904.1|WP_145879450.1|68920_69661_+|hypothetical-protein
MNATTWKKFGRRTLVIAAALIAGGYAASAAWKLSGSEQWKLEIDRDGVQVWSYKEPGRSTKLFKAVTHGHYTQSQLVASLMLDNDSLQNCKDWIPVCTKLTVLEPYNDKAQGDAVLWTLELMPPVFANREYVIKSHAAQDPQTKIVSVDIMAAANKIPLHECCVRITHIHNRWQVSPARNGQVEIALVQDFGMGGFFPDVLLNLGNAEQTWTMFHDKLPGLLNKPKYRNARFDYIDEAAAAPLVSR
>NZ_CP046904.1|WP_158206629.1|69698_69980_+|acyl-carrier-protein
MDIQHAVEKAIRDVADEWDLALPPLRPDSELVDELGFSSMTVVSLTMNLEEELGVDPFADRSVMLTAMRTIQDLCDVYGRALAAAAPASAASI
>NZ_CP046904.1|WP_145879445.1|70020_85200_+|SDR-family-NAD(P)-dependent-oxidoreductase
MNSMNDDVAVIGMSGKFPGANSVPEFWDNLCARKDCVRDLTDDELRAAGVPERDIADPDYVKAAAALDGVDLFDAGFFKVAPLEAELMDPQLRLLLQCAWETLEDAGHASGEAQRIGVFAGAGGLPTSYYSSYANLHERFPRMTASAAQLVNDKDFLATFLSYKLNLTGPSMTVQTACSTSLVALHQARLAVLAGECDMALAGGVSVRVPDLHGYHYQDGFIYSRRGRIRSFDADADGVVFGSGMGLVLIRRFADAVAAGDHIYAVIKGSAILNDGKGKMSYAASSAAGQIACVRTALDKAGVDAASIGFVEAHGTGTRMGDPEEVKALSAAFGAAPAGRPWCALGAVKANVGHLEAAAGIVGFIKAALAIEKGVVPPLAHYTAPNPRIDFAGTPFFVNTAVQAWETGEAPRRAAVNSLGIGGTNAFVILENHVPVPAAAPAGLVIVPLSARTHEALRAGVDRLARFLDGCAARDEAVDLDALAWTLQTGRVAMEVRTAFVAESTDALRQALAAWLAGEPAALPDNDAGRLAAAWAAGGQADWQALRGDRPGRRISLPTYAFARERHWIDGAVATSAAALHPLLHENTSDLREHKYSSTFGGDEFFLKDHQVRLGAGGAPEKVLPAVAYLEMARAACERALPAGTSFELRDVTWLHPLTVSGPTLAHVALVPEEDSGQAGETLRFEVFSSDERIHCQGAFVPVAPTGDAALDLDRLRAAMTRGALTGARVYEAYAAMGLAYGPAKRAVAGIELGDGELLARLKLPAKVKDTRGDYVLHPSLMDGVLQAATVLMFDPASPPARPIVPFALASLRVHAPCGGELYVWARRAEGGGIDVDVVDTAGQPCARLRGYTPRALGGNAVDSLIATRVWEAQAAAGATEAAPVTERHVLLCGLPQVDATALGGHCTMLNVDGADAAERYTAATLACIERLQAIVRAKPQGQVLVRLVAADDAQHALLAGLSGLLKTAQLEHSWLTGQVVLVDADIDTAQLAALLQADDGHAALVRHRRGTREVARWRETARGYDHCPLKDRGVYLITGGLGGLGMLFARAIVERCPAATIVLTGRNPAGAAPAALQALRDGGATVEYRQMDLDDAAAVARVLAEVVAEFGQMNGIVHSAGMTADSFLLNKDAGTAARVLAPKVMGTVNLDQASRAIDLDFLVLFSSLAAALGNLGQGDYAAANGFLDEFAVHRNALVRAGERRGTTVAIQWPLWRDGGMQSDGATRERLFDATGTVPMRTETGMQAFFRLLGAGLDGALVMEGDGDAMRRRLASGHALGDTGAQQTAPAGDLELAGIAEALLCRQLAALLKLRPEQVDPRAALEDYGIDSILALDLTRQLEATFGALPKTLFFEYLTIRELAGYFARHHGAVLAGQGAAPRMAARPVAPAVGPARVTSIRGRKPAAGAQLAAEPIAIVGLAGRYPGGPDVDAFWRNLRDGKDCIVEVPRERWDWREYYSEDRAAKGAHFSKWGGFIDGVDEFDARFFNVSPVEAELIDPQERLFLQHAWLAIEDAGYSRAALQIPNADGLPAQVGVYAGVMYGEYQLLGAEASLQGKRTAFAANPASIANRVSYVLNLHGPSMVVDTMCSSSLTAIHLACQDLKLGRTGMAIAGGVNVTIHPNKYLMLSAGQFISGDGHCQSFGEGGDGYIPGEGVGVVVLKRLSDAQRDGNHIYGVIRGSALSHGGKTNGYTVPNPQAQAAAVRQALAEARVDPRHVSYVEAHGTGTKLGDPIEIAALTGVIRERTADTGYCLIGSAKSNIGHAEAAAGIAGLTKVLLQLRHKQIVPSLHSERLNPHIDFGSTPFVVNQSLCAWEPPAVDGAALPRIAGISSFGAGGSNAHLVIEEYAAPAPAVEEPGWHVFPLSARTPEQLRRKAADLAAFLVGGAVPPAASIAATLQLGREAMDERLAVLADSAQHLRERLLAWLDGGAGDGVWQGNAKANREMLALLTQEQDVVDKWLAAGKLATLAELWAKGLELDWGRLHPVRPQLASLPGYPFARQRYWFDVPRQAPQAAVLHPLLHANTSNFDQHSYTSTFTGDATVLEGPAGARRLSTEGCVAMVRAALAMTLPDSDLTLRDVAWARPQPVVEGVPVTVALFDRQADELAFEIYTAGDVVLCQGRAGKAAAVAAEVAVPVMATAAATVKPQAGIRLAALTEPAHGTAAAAGKPRIALAAAAQQVPAAVELFDDGDGMYRIAVGAPVLDSAVAQALVRALDTVANAPAAKVVTLAASLAGGADACRAARAAGLYEAIARFPYPSIALAAGDTADAGFLAAALCDVIVCAEDARYSARSLPAGAGALLAQRFGAPQAAELLYLSSGATGTTLRAQGWTCPIVPRTEAPRHARELAANLARKSQLALRLLKEELARDIVPMVTALGDIAEEPAPAPLMPLPPVSARLRLASRGDRIAALTVEATDNADGLPEELADAMVAIADAGYRAVVLASDVPGFLPAGLNIVAVRRLGHTLTQLPIGVVASVTAGAQGAGWYVALCCDAASHGEAARYDGGAMADELAGLLSLRLGDDAARQLILTGTNATGAELHALCPAVRLGEDTALQAAQALAALPTGTLPACKQATSAALAAAPLVAALQDDVAAPAPGAVPLRSLVVTATLHADGVVELKMADTDGKNTFTDALSDGLREAFDWIGAQPACKVVVLTGYGNYFSSGGTRDTLLAIGEGARRFTDNLAFRLPLDCPVPVIAAMAGHGIGAGWALGMFADIALFADESRYVSPYMEYGFTPGAGATLVFPRRIGLDLARETLLGARELAGGELKERGLRHAVLPREQVLPAALALARRIAQAPRARLVALKARWAAPLVDALPATFVRELAMHERTFVGQQETLAKIRLAGTVAAVAAEVSTRTGAPVRDAATLAAELRRMLAQELRMQEHEIGDDEQFVDLGLDSITGVTWIRRINETYGTAIEAIRIYSYPTLGKLAAFVLEQCAPAAAQPAIDGDPVEATLRTLLAQELRMAEADIGSDDPFVDLGLDSITGVTWIRRINETFGTAIDAIRIYSYPSLRQLARYVQQEAGERAPVAAPVEEVVTLTSMRGRMHAVVPVRSHETQRVAVVGMAGQFAQSPDLAAFWRNIAAGRDCITEIPRERWDIDRYYQPGDAAAGKTYSRWMGALDGVDHFDAAFFNISPREARAMDPQQRLFLQTCWHTIEHAGYNPRALAGSRCGVFVGCAAGDYHELSRHERLSGQGFTGGAPSILAARISYLLDLHGPSMAIDTACSSSLVALAAACDSLVLGTSDIALAGGVNVMAGPAMQIMTAQVGMLSPQGRCYAFDARANGIVNGEGVGAVLLKRLADAERDGDHIYGVIEGWGTNQDGKTNGITAPNADSQARLQQDVYHRFGIDPDGIGLVEAHGTGTALGDPIEVAGLKDAFGRYTDRRGFCALGSVKSNIGHCLSAAGISGFLKVLLALQHRQLPPTAQFERLNPHIALDESPFRISDRLRDWPAPAGAPRRAAVNAFGFSGTNAHVVVAEYGVPAVAAPTTGPAIVPLSARTPDALRRAAADLLAFLEDPEADLASIAYTLQTGREALTERVAFVAASVAELREGLRAYADGGTAAAGTVATGLAKDGQEAAACIGRKDWAALAALWVGGGTVDWAALYVAGPAPRRIGLPGYPFAAERHWIDTVDQEFAEVIAVPASSAAAVPPATGAPVVPIEQVRQQLKATLAEALFMQPADIDIDRSFTELGLDSIIGVEWMKAVNKAFGTALSATRVYDYPSVRELAAHVQAQLGEAPAAVAVEVTPSAPVMAPRPAAPASADLERQLKASLAEALFMQPGDIDANRSFTELGLDSIIGVEWMKAVNRRFGTSLSATRIYDYPTVKELAAFLQREVAVETDVAPHFAIVATDGDLERDGEVAVRYAISLENNVCLREHVVFGEHLLPTDAYLELVYGAWASVSGGPVPALEQVAIVSPLLGARDRDIHVQVRFRRHGAAVQFSVRSSAQADFRDERVHMQGLVAAAQPAAIRCDGHFAVEHELGAADIPTNAGTCYAPLRALRFGTSQATGEIHVAEHPYRFATNPFVLYGAVCTAINYGRWLAARQYGVSNDQFLPVRIGRVTPLRELAGADYRCHAALRRLERDVVECYVEIVDAEGALVAVFDTLELRRVAQQAIARVAAPMTSAPADKPAAEADDIAIIGMSCRYPQSADVDAFWRNLAAGRECIVEVPAERWADHPGWYHPEPGHPHTSYSKWAGLLDRIDAFDPLFFGIAPAEAELIDPQQRIFLEECWKAIENAGYAPGALANVACGVYVGCGAGDYARVLAGAGQDTAGAAFMGTSTAIQAARIAYHLNLKGPALAIDTACSSSLVAVHLACESLRSGETQLALAGGVNVLTTPLGHILTSQVGMPSHDGRCAAFDASADGIVFSEGCGVLLLKPLAAARRDNDEILGVIRASAINQDGKTNGITAPSGAAQERLLRQAYGKFGIDPKRIGYVEAHGTATPLGDPIEVNALTAVYNGAGAGKGACALGSVKTNIGHTGYAAGVAGIIKAVLCMRHRKLVPSLHYDQPNPHIAFDGSPFHVNTAYRDWASAAPRLAAVSSFGFSGTNAHVVIGEHVAATETPASARPVLVPLSAKTPEQLANKVADLLDYLEHDEQVDLVRLAYTLSVGRDAMDHRLALVVGSVEELVAALRGWQAGKPGMAVRQGQASRDGAALAVFAGDAAMQGVIDGWIARGDLGRLADIWVRGMETDLGRLYPGEPPRRMVLPAYPFARERCWVEGKAAAARETLHPLLHRNVSDLTQQRYASLLTGGEFFVAGHRVNGAPVLPAVAFLEMARAALADAAHVPAAQLELRHVAWAQPLAVTAPTDVSIAVFEEDGGYGFEVYSGVADVPHCQGSCVAAVGGAAQPLDVALLRARMPTAGPAPQALYEAFARIGLDYGPAFRGITQLNVGNGELLAALELPAAADNGADWVLHPSLLDSALQAGVALLGDVVGGAVAPCLPFAVEAVRVHAPCPPRMLAWVRGTGTNATLVKVDIDLCDGAGNVCVQLRGFSSRPLRDAAFDEVHYQTVINAILNNDITVDDAVELGNV

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Crispr_ID: NZ_CP046904_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP046904_2

813656-813804

Orphan

Consensus_repeat	Method
GTGGTCGCGGGTCGGCGGCGCAAGCAACAACCCACGGCAGAAGCCGGGGTCAG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP046904_2

>merge|NZ_CP046904|2|813656-813804|CRISPRCasFinder
GTGGTCGCGGGTCGGCGGCGCAAGCAACAACCCACGGCAGAAGCCGGGGTCAGTATCGGCGGCAGTTCCGGATTGGCGGAATGGGCGTTTAGGGACGTGGTCGCGGGTCGGCGGCGCAAGCAACAACCCACCGCAGAAGCCGGGGTCAG

>NZ_CP046904|2|1|813656-813804|CRISPRCasFinder
GTGGTCGCGGGTCGGCGGCGCAAGCAACAACCCACGGCAGAAGCCGGGGTCAG	TATCGGCGGCAGTTCCGGATTGGCGGAATGGGCGTTTAGGGAC
GTGGTCGCGGGTCGGCGGCGCAAGCAACAACCCACCGCAGAAGCCGGGGTCAG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP046904.1\|WP_145874093.1\|817368_818259_-\|DUF1080-domain-containing-protein	unknown	unknown	gnl\|CDD\|368908
NZ_CP046904.1\|WP_145873987.1\|812700_813651_+\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|181818
NZ_CP046904.1\|WP_158206669.1\|810747_810894_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP046904.1\|WP_145873980.1\|821816_822653_+\|TIM-barrel-protein	unknown	unknown	gnl\|CDD\|224007
NZ_CP046904.1\|WP_145873984.1\|816524_817304_+\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|226648
NZ_CP046904.1\|WP_145873994.1\|803093_804581_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|225121
NZ_CP046904.1\|WP_145873988.1\|811749_812604_-\|MBL-fold-metallo-hydrolase	unknown	unknown	gnl\|CDD\|225130
NZ_CP046904.1\|WP_145873989.1\|811139_811670_-\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|173926
NZ_CP046904.1\|WP_145873990.1\|809861_810695_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP046904.1\|WP_145873993.1\|804605_805643_+\|family-43-glycosylhydrolase	unknown	unknown	gnl\|CDD\|350131
NZ_CP046904.1\|WP_145873978.1\|824117_825137_+\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224093
NZ_CP046904.1\|WP_145873986.1\|813869_815996_-\|DUF839-domain-containing-protein	unknown	unknown	gnl\|CDD\|225752
NZ_CP046904.1\|WP_145873991.1\|807230_809786_+\|patatin-like-phospholipase-family-protein	unknown	unknown	gnl\|CDD\|366777
NZ_CP046904.1\|WP_145873983.1\|818424_819285_+\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|225117
NZ_CP046904.1\|WP_145873981.1\|819849_821580_+\|GMC-family-oxidoreductase	unknown	unknown	gnl\|CDD\|225186
NZ_CP046904.1\|WP_145873992.1\|805816_807184_+\|DUF4071-domain-containing-protein	unknown	unknown	gnl\|CDD\|372546
NZ_CP046904.1\|WP_145873982.1\|819281_819848_+\|gluconate-2-dehydrogenase-subunit-3-family-protein	unknown	unknown	gnl\|CDD\|379295
NZ_CP046904.1\|WP_145873985.1\|816138_816519_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP046904.1\|WP_145873979.1\|822649_824140_+\|ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|224053
NZ_CP046904.1\|WP_145873995.1\|802434_802710_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP046904.1\|WP_145873980.1\|821816_822653_+\|TIM-barrel-protein	gnl\|CDD\|224007	COG1082, IolE, Sugar phosphate isomerases/epimerases [Carbohydrate transport and metabolism].	1.33526e-13
NZ_CP046904.1\|WP_145873987.1\|812700_813651_+\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|181818	PRK09393, ftrA, transcriptional activator FtrA; Provisional.	6.99859e-119
NZ_CP046904.1\|WP_145873993.1\|804605_805643_+\|family-43-glycosylhydrolase	gnl\|CDD\|350131	cd18619, GH43_CoXyl43_like, Glycosyl hydrolase family 43 protein such as metagenomic beta-xylosidase/alpha-L-arabinofuranosidase CoXyl43. This glycosyl hydrolase family 43 (GH43) subgroup belongs to the GH43_AXH-like subgroup which includes enzymes that have been characterized with beta-xylosidase (EC 3.2.1.37), alpha-L-arabinofuranosidase (EC 3.2.1.55), alpha-1,2-L-arabinofuranosidase 43A (arabinan-specific; EC 3.2.1.-), endo-alpha-L-arabinanase as well as arabinoxylan arabinofuranohydrolase (AXH) activities. GH43 are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. Many GH43 enzymes display both alpha-L-arabinofuranosidase and beta-D-xylosidase activity using aryl-glycosides as substrates. Included in this subfamily is the metagenomic beta-xylosidase/alpha-L-arabinofuranosidase CoXyl43, which shows synergy with Trichoderma reesei cellulases and promotes plant biomass saccharification by degrading xylo-oligosaccharides, such as xylobiose and xylotriose, into the monosaccharide xylose. Studies show that the hydrolytic activity of CoXyl43 is stimulated in the presence of calcium. Several of these enzymes also contain carbohydrate binding modules (CBMs) that bind cellulose or xylan. A common structural feature of GH43 enzymes is a 5-bladed beta-propeller domain that contains the catalytic acid and catalytic base. A long V-shaped groove, partially enclosed at one end, forms a single extended substrate-binding surface across the face of the propeller.	0
NZ_CP046904.1\|WP_145873979.1\|822649_824140_+\|ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|224053	COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism].	0
NZ_CP046904.1\|WP_145873983.1\|818424_819285_+\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|225117	COG2207, AraC, AraC-type DNA-binding domain-containing proteins [Transcription].	1.86162e-25
NZ_CP046904.1\|WP_145873994.1\|803093_804581_+\|MFS-transporter	gnl\|CDD\|225121	COG2211, MelB, Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism].	1.96966e-107
NZ_CP046904.1\|WP_145873988.1\|811749_812604_-\|MBL-fold-metallo-hydrolase	gnl\|CDD\|225130	COG2220, COG2220, Predicted Zn-dependent hydrolases of the beta-lactamase fold [General function prediction only].	3.48622e-15
NZ_CP046904.1\|WP_145873989.1\|811139_811670_-\|GNAT-family-N-acetyltransferase	gnl\|CDD\|173926	cd04301, NAT_SF, N-Acyltransferase superfamily: Various enzymes that characteristically catalyze the transfer of an acyl group to a substrate. NAT (N-Acyltransferase) is a large superfamily of enzymes that mostly catalyze the transfer of an acyl group to a substrate and are implicated in a variety of functions, ranging from bacterial antibiotic resistance to circadian rhythms in mammals. Members include GCN5-related N-Acetyltransferases (GNAT) such as Aminoglycoside N-acetyltransferases, Histone N-acetyltransferase (HAT) enzymes, and Serotonin N-acetyltransferase, which catalyze the transfer of an acetyl group to a substrate. The kinetic mechanism of most GNATs involves the ordered formation of a ternary complex: the reaction begins with Acetyl Coenzyme A (AcCoA) binding, followed by binding of substrate, then direct transfer of the acetyl group from AcCoA to the substrate, followed by product and subsequent CoA release. Other family members include Arginine/ornithine N-succinyltransferase, Myristoyl-CoA: protein N-myristoyltransferase, and Acyl-homoserinelactone synthase which have a similar catalytic mechanism but differ in types of acyl groups transferred. Leucyl/phenylalanyl-tRNA-protein transferase and FemXAB nonribosomal peptidyltransferases which catalyze similar peptidyltransferase reactions are also included.	5.61071e-07
NZ_CP046904.1\|WP_145874093.1\|817368_818259_-\|DUF1080-domain-containing-protein	gnl\|CDD\|368908	pfam06439, DUF1080, Domain of Unknown Function (DUF1080). This family has structural similarity to an endo-1,3-1,4-beta glucanase belonging to glycoside hydrolase family 16. However, the structure surrounding the active site differs from that of the endo-1,3-1,4-beta glucanase.	9.22923e-36
NZ_CP046904.1\|WP_145873978.1\|824117_825137_+\|ABC-transporter-permease	gnl\|CDD\|224093	COG1172, AraH, Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components [Carbohydrate transport and metabolism].	5.66057e-76
NZ_CP046904.1\|WP_145873986.1\|813869_815996_-\|DUF839-domain-containing-protein	gnl\|CDD\|225752	COG3211, PhoX, Predicted phosphatase [General function prediction only].	1.19576e-177
NZ_CP046904.1\|WP_145873991.1\|807230_809786_+\|patatin-like-phospholipase-family-protein	gnl\|CDD\|366777	pfam01734, Patatin, Patatin-like phospholipase. This family consists of various patatin glycoproteins from plants. The patatin protein accounts for up to 40% of the total soluble protein in potato tubers. Patatin is a storage protein but it also has the enzymatic activity of lipid acyl hydrolase, catalyzing the cleavage of fatty acids from membrane lipids. Members of this family have been found also in vertebrates.	7.75703e-10
NZ_CP046904.1\|WP_145873981.1\|819849_821580_+\|GMC-family-oxidoreductase	gnl\|CDD\|225186	COG2303, BetA, Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism].	2.96984e-74
NZ_CP046904.1\|WP_145873992.1\|805816_807184_+\|DUF4071-domain-containing-protein	gnl\|CDD\|372546	pfam13281, DUF4071, Domain of unknown function (DUF4071). This domain is found at the N-terminus of many serine-threonine kinase-like proteins.	1.44032e-28
NZ_CP046904.1\|WP_145873982.1\|819281_819848_+\|gluconate-2-dehydrogenase-subunit-3-family-protein	gnl\|CDD\|379295	pfam13618, Gluconate_2-dh3, Gluconate 2-dehydrogenase subunit 3. This family corresponds to subunit 3 of the Gluconate 2-dehydrogenase enzyme that catalyzes the conversion of gluconate to 2-dehydro-D-gluconate EC:1.1.99.3.	2.52628e-32
NZ_CP046904.1\|WP_145873984.1\|816524_817304_+\|AAA-family-ATPase	gnl\|CDD\|226648	COG4185, COG4185, Uncharacterized protein conserved in bacteria [Function unknown].	5.45449e-26

>NZ_CP046904.1|WP_145873987.1|812700_813651_+|helix-turn-helix-domain-containing-protein
MMSKSLRVAVVAFDGMTPFHLSVPCLVFGGAFDVIVCAAEKTPLATSAGFSIAVDHGLEALDGADIVAMPAWYIDFRPAPPPLLDALRRAHARGARVVGLCLGAFPVAEAGLLDGKKATTHWELADALASRYPQVKVDREVLYVDEGDVLTSGGVAAGLDCCLHLLRELRGADVANKVARRLLIAPHRQGGQAQFIEHPVPSNPAEGRFSEVLGWVARHLREPHSIDALAARAAMSRRHFTRHFRQATGTSFKQWLLGQRLAHARRMLESSDASIELVATEAGFGTALSLRQHFRTALRTTPTEYRRQFRIGGMGV
>NZ_CP046904.1|WP_145873988.1|811749_812604_-|MBL-fold-metallo-hydrolase
MTRIAKQLAIAAALAATVATSATAGSVGFQQIRNATVKITYGGTTFLVDPMLAKAGSYPAFQGTYHSELRNPTVELPLPLEDVMRADAVIVTHTHLDHWDDGAKAALPKHIPLFAQNDEDAASIRKAGFTDVRVLGPDSEFKGVRLTPVTGQHGTDQIMAALGERLGKTVGIVFRQPGHKTVYIAGDTIWTPQVAGAIAQYRPDVIVLNTGYARLKAFDGSIIMGKEDVERAYHAAPQATIIGSHMEALNHLTQTRQDLKDYVAEKGLDAQRVLVPADGEAYRF
>NZ_CP046904.1|WP_145873989.1|811139_811670_-|GNAT-family-N-acetyltransferase
MSNTVFAPLTLRALAPGDLPHLLNIQLACYGPDFIESADVYARRLASAVNCSLVCERAGAVCAYLAAYRSVHGKVTPLHGEFEPSERTPDTLYLHDMAVLPAYAGQGLAQALLERLWEQGRAWGLRHTALVSVQDTEGFWARHGYVPQSLLDEEERARLASYGAGAVYMARPLASV
>NZ_CP046904.1|WP_158206669.1|810747_810894_-|hypothetical-protein
MWNDEHDAAAERPRQRVRLKRPRKPGADLMRAGLVVLALVIIASFFGD
>NZ_CP046904.1|WP_145873990.1|809861_810695_-|hypothetical-protein
MKLLGNILIWLGLYAVYAGSLGSQQYSFGSFLLHVAFGAPFFLIGSWLVSMSNGGVQVDLDRLAQAIADAQASEHVVFLYLRPFDSTNVYRIRDTSLTLFSAELWERDGFDDIERLLSRALERTGIFLALGKPGEHRGAGRAELADEHWQAKVAGLLVRSSVLILLPARTPGTLWEIARIVDDGHLDKTLFIMPPSDGSLYTMRGDEADHWARTQEACSKLGLDLPVYRPAGAIFKYLAGARQWAITDLPGPDPIAWADRLQFMLDIPDIPDSAASA
>NZ_CP046904.1|WP_145873991.1|807230_809786_+|patatin-like-phospholipase-family-protein
MATDTPAMRALLATLKPMLEAKAPWPASVGGVTALLAQLKAEHEFGLGAALLKGALACGQYPEHTPALLREQAMCTYKNEHLPPAERFDTALGLLRELGLDKEDQRNTETLCLAAAIHKRRFEFAGQPPDLLMACHYYAAAWQRDPEQDRGYGGVNAAFVLDQLAARLDDPARREHAAALRHAVIARLEPLAEHSAPDYWLYCTLAEAHWGLGNDTAAAGWLARAAATGPAEWQLRSTTEQLVKLARLHGTPLPPRDVPPGQWPPVWKPLHRLLGQRAAGALGAYRGKVGLALSGGGMRAAFYHVGVLARLAELDLLRHVEVISCVSGGSIVGALYYLELKKLLEARRDDMVGRQDYIDLVDTVRKQFLARTAANLRMRVFCSLAGNVRMLFQWPMGKHRTARLGALYERYLYRPEGGKAAALPMRELLIKPSGETADFSPAFDNWRRAAKVPALLLNATSLNTGHAWHFTAKGMGEPPALVSEHADRRRRYRRLYYTDAPTPQLRDVGLGAAVAASSGVPVLFAPLELAGLYQKRVLRLVDGGVFDNQGVRSLQVEGCTFMLCSDACGQMEEQTRPCSLWFMVYSRSTKIMMERGRETTYQHFAALQDHHAVDGFLAVHLKKDLTRDELAWIGCPDMPPALAQSGNLPYGIAPDMQRHLAAVRTDLDAFSEVEANALMLSGYLMTEHAFKTELRNSAGTLGLDVDTARCPWDFLRLEQLMASAADPANPARERLATILARGKSMFSKAVFLAPFRSLLIAAGGVALGFLAWRGALALAGWLERGGAPAWVTTLLWAAIAAGAAVLGFTLFINAHLYLLDPVYLKHGRMDEMLDRQPPDAAVTDGGGRQPA
>NZ_CP046904.1|WP_145873992.1|805816_807184_+|DUF4071-domain-containing-protein
MKPLCFVLMPFGRKADAHGRTIDFDAVYRQAILPAITAAGMESLRADEEAAGGIIHKPMFERLVLCDFAIADLTGANANVFYELGVRHAARPHTTILLFAEGGMLPFDVAALRALPYLLQADGTPADAAGTSQRIGTLLRNSRRPVIDSPLYQLLNDYPDIQRDKTDVFRGRVAYSQGVKTRLASARRNGRDAVWQVERDIDAELRQQGTTGLADAEAGILVDLLLSYRATEAWHDMLRLVELLPAPLDRTVLVREQQAFALNRAGDDDAAERMLRDLLRERGPNSETCGLLGRVYKGRWQQAAAQGRVAEADGWLRAAIDVYRQGFESDWRDTYPGINLLTLMECAAEQDAERAELLPVVLYAARRRLAAAPEDYWNHATMLELHVLRDDRPAAQRCMGAVLNRAREAWEPDTTAANLTFIADARRAIGRAQPWYADLIAQLRARSAALRTGSR
>NZ_CP046904.1|WP_145873993.1|804605_805643_+|family-43-glycosylhydrolase
MAENPNQARVQQLKAHAISQPLVTHIYTADPSAHVFDGRIYIYPSHDIEAGIPFNDNGDHFAMEDYHVLSMDRPDGEVVDHGVALHVKDVPWATRQMWAPDAARKDGTYYLYFPAKRADGIFQIGVATSNSPAGPFTPEALPIEGSYSIDPAVFEDAGVHYMYFGGIWGGQLQKYRDNRFDAANEEPSAHEPALTARVARLADDMKQFAEAPRAVVILDEDGKELLAGDHERRYFEGPWMHKYRGKYYFSYSTGDTHFLCYATSDSPYGPFTYQGKILTPVIGWTTHHSIVEVDGRWYLYYHDSSLSEGVTHLRSVKVTELFYDDDGRIVTLYPYGEANQDVDIA
>NZ_CP046904.1|WP_145873994.1|803093_804581_+|MFS-transporter
MTNTTDSANARLSVTEKVGYCLGDLAANLIFQTLLTFIAFYYTDVFKISANAAATIIFAGGIVGACFNPIMGLIADRTATRWGKFRPWILWTAVPFGLVAILAFSTPDFGNQGKIIYATLTYVLLMLIYSANNLPYSALSGVLTGSMSERNSLSSYRFVAVMVAQFIIQVLLLPLVLILGGGDKVAGFQNTMIVFAIAGTVCFLITFFTTRERIVPTAEQRSSIGQDIADLLRNKPWVVMLVVTILVFVTLALKGGMYIYYFRSYLSAPHLAAFLQDVGFNGFIAGLNGALAGMGLTAFQWPEDAPTSAFSVFNAIGIVMMIIGIGFSRPLADRFGKREVFGIALFISTLFMLAFYFYAPTSIGIVFLSQLLHGFFYGVTIPLLWAMIADVADYSEWKNNRRATALLFSAMIFGLKAGLSTGGALVAALLSGFGYDAALTTQAPRVVDGIRLAVSVYAGIPFLLAVACLAFYEIRKSTERTIEHELGLRRAAAQR
>NZ_CP046904.1|WP_145873995.1|802434_802710_-|hypothetical-protein
MDPTISLIVVVAACYAAGIAVMGWFYTVPGEQYRKLPAAVLLALAFAGIAGAVICYFVEKRIEWPSFLLAMGIECLRTLIKDQDGKVRSTV
>NZ_CP046904.1|WP_145873986.1|813869_815996_-|DUF839-domain-containing-protein
MSKISRPLEPEDFGTNQSGNPYFGDIVSAKRRTILVGGLGTVALSLFGCGGSDGIDTPAVPGGPTPPAEPTIPPNTLNFTSVSRTPMIAGDDLIVPPGYKWSALTKQGDPIGSTLGAPAFRSTAAKRFDTTGAEAELQFGDNHDGMAYFPLPYGSKSSDRGLLAINHEAARANVISGFRFVGVTATTDPATLDPAGETAMNPDVVRKQKAFHGVSVAEVYRDSAGKWQVQANSTYARKVHADTPIAIGGPARGHAAMRTGADPTGTQMRGTLGNCGSGATPWGTYLTCEEDSHKNYFATREMKADDPRFQDPRWARYSLVPGYNRDYTWHFVDKRFDLAVEPNETNRFGWIVEIDPYDPNWQPVKRTAMGRFAHENVAHLVNADKRVAFYMGDDQNFDYIYKFVTAKAMDPDNRTANRGLLDDGTLYVAKFNDDGSGTWMPLIQGQNGLTAENGFPDQASVLIWARLAADKLGATQMDRPEWLASDAGSGWVYATLSNNTGRGSATAPGGTTAAPRAAQPKNAANPRDKNLHGHIIRLRDAGGDVTATKFSWNVVLLAGTGTSDTPDPANKGTINGDAFSSPDSVMFDAWQRLWIGSDAADALKSSDWTGKGTDWSGLGGDMLLAMDTRTGQVKRFLLAPDGAEVCGAQLTPDGRALFVNIQHPGTEQPRDIPVEAMTWPDKIPVAQGGVVRSTTVVITREDGGVIGM
>NZ_CP046904.1|WP_145873985.1|816138_816519_+|hypothetical-protein
MDTMATSIKSPKKRAAGGVQRDGRFSMTIEPQGQVVRGTTVRFGGVTVVAPKPEESAVKKQLAAGKRAVSQLKKVLVSPGVRLQKTPDTPIFRADPRDASLVVRVLNGRSVRGRFIQGQFVPLTEQ
>NZ_CP046904.1|WP_145873984.1|816524_817304_+|AAA-family-ATPase
MITPSRGASNVARQALPQADKAVRAVLKNAAEKPFAIVLAGHNGSGKSTFWYEHVAEDLQIPLINADRLMLSILPEAGADGKLRPWAQQLRDKDTSWMAVAQQGVQGFIAQAISQKVPFAFETVFSYWKKLPNGRHASKIDIIRDLQKAGYFVLLIFVGLTSAELSIGRVMTRVFKGGHDVDEEKLRERYPRTQQAINKAILVSDAAILLDNSRTENLAFTPVHIRRKRTVDFDIRAVPAALRIPKEITTWLDVVAPRN
>NZ_CP046904.1|WP_145874093.1|817368_818259_-|DUF1080-domain-containing-protein
MGRRGPVQGRASITDIYNETTMTRIHTIARTGFIAALLALSAPLFAAEGWTTLFNGRDLTGWTTWVSMQPTSDNMKAPTSVRGANHDPKHVFSVVDGMLRVSGEEWGAVSTVGDYENFHLKFDVKWGEKKWFPRLAAPRDSGLLYYAVGPDGAQSGHWMRSHEFQIQEGDCGDYHSLDGVTVDAHVGDANQGDWKFYRYEPGLPLRTSLAARILKRGSYEKPAGEWNTMEVIADGTTLIHIVNGHEVLRAENSRQKVDGQFVPLTRGKFSIQSEGAEAFFRNIVVKKLEESPRKGM
>NZ_CP046904.1|WP_145873983.1|818424_819285_+|helix-turn-helix-domain-containing-protein
MNTIVLGRGVVVAQGAPGERPVPGNGAASAVTAGCARFFTEHGISTPSALFDTLPDMYYFAKNRAGQFVWGNRLLQEQHDLADVADILGKTDHDFFRRDIADRIRADDLSVMDRGVTVKNKLEVLGGENGELIWLFTTKAPIRDRHGEIVGIEGFSRDAQRSQDVIAPFHEFRKCIEYLQEHLMEPISIEHLARLSCMSLSTFERKFKQHFSLTPKQYILHRKVHEACRLLPQVNNIARVALETGFGGQSYFTKQFRTVVGITPKQYQLSLAAGRTGRAPRQEHRT
>NZ_CP046904.1|WP_145873982.1|819281_819848_+|gluconate-2-dehydrogenase-subunit-3-family-protein
MSEPSRDRRAALLRLGALCGLALAGDVLAAVTAAKRPGAQPQFLTADELALTGVLAELIIPQTDTPGALAVGAHYTADHLLHACVAEPEQAATRAVLAKLDSAAQRDGSKRFVALPAARQVALLHALDNGTAPFDGSDGRAFRQLKSLVAFAYYTSEAGASQELAYLPFPGGFTGNVRITPSTRTWAL
>NZ_CP046904.1|WP_145873981.1|819849_821580_+|GMC-family-oxidoreductase
MASVYIKASPETFDAIVVGSGITGGWAAKELTERGLKTLMVERGRPVEHGVDYIGENKDPWTMPNRGLVDHKLAEEQYFNQRMCYAFDEHTKHFFNNDRDMPYSTPEGRPFSWIRGNQLGGKSLMWARQSYRWSDLDFEANLKDGHGVDWPIRYADLAPWYSHVERHVGISGTSEGLSVLPDSEFLPAFDFNSVELALKKKFDAKYAPARMIMGRTANLRTPGETQLAQGRGQCQARSQCHRGCSFGAYFSTQSSTLPAALKTGRLSIATDSIVHSVIYDPKTNRATGVRVIDANTLETREYHAKVVMLCASTLASTAILLNSTSEAYPAGLANSSGVLGHYLMDHLFGAGASGRIEGFEDDYYQGRRPTGPYIPRFRNVLDKHPAFLRGYALAGGAGREGWQSAAHRPGFGKDFKAMIRKPGPWRFGLGGQGEMLPRYENMVSLHPTKKDKWGMPLLHIDCSYSDNDRKMQEDIANTAANILEALGVKDVRRHTKTLEEWPPGLSIHEMGTARMGRDPKTSVLNGFNQAHDVPNLFVTDGASMASSAWQNPSLTFMALTARACAYAVDELKAGRI
>NZ_CP046904.1|WP_145873980.1|821816_822653_+|TIM-barrel-protein
MTTIRTATFFALLLAATAADATPRLGVQLWSVKDEIKQDFTGTLEKIGALGFQGVEFAGEFGPYKDNPAGLKTFLDKHRLQCAGAHVHFDQLAAEHFDATTAFYRTLGCTNLIIPMDARGASATGSLEMSKQLTALSGQLAAKGMRIGYHNHAQELAGAVGATPWDVIAKNTPQAAILQQDVGWTTYAGKDPVAYVKKYPGRTVSTHFKAKFVEGTSGTPIIGQDKTDWAGLARAVRQVGGTDWIIVEQEEYPNGMGQLESVAASLKGLQAVLAKLPQ
>NZ_CP046904.1|WP_145873979.1|822649_824140_+|ATP-binding-cassette-domain-containing-protein
MSLAVRFQHIVKEFGPVRVLHGVDFALEPGRVVGLLGENGAGKSTLMKILAGYERPSGGQLVIDGAERRFASARDAEALGIVLIHQEFNLAEHLTIAQNIFLGHERTRGWLLDRAAMRQQASRHLEQVGLDVDPDTRVADLIVAEKQLVEIAKALARNARLLIMDEPTASLSPGETAKLFALMARLKADGVTIVYISHKLDEMEAHTDEVVVLRDGKFVTRAATKDVNRQRMANLMVGRDVSDMFQPKRLVTADAQVALRVAGLTVPGWVQDLDFDVRAGEILGFAGLVGAGRTEAFEGLFGLRPKRADRIEVAGQPVRIRAPRDAMLHGLAYLSEDRKGKGLHLDMTLAQNLTMMTLERDAHPWLDVKGGRAALDAAIADFGIRLRDPQCTARALSGGNQQKLALAKYLRTNPRVIVLDEPTRGVDVGAKRDIYALIHRLAAEGRAVIVISSELIELIGLAHRVAVLRGGRKQAMLGPDQLTEETLIAHATDTHH
>NZ_CP046904.1|WP_145873978.1|824117_825137_+|ABC-transporter-permease
MQPTPTTKPLTPAAWPAVARLLTHTKGLGPVIALVLLCVAGALMNPDFATFDNLMNVLTRTAFIGIIAVGMTFVIVSGGIDLSVGSMAALIAGVMIVAMNALATGANAPSALAIVVLGIALALAFGAAFGIAHGFLVTHGRIEPFIVTLGTLGIFRAVLTWLSDGGALTLDFNLSETYGPVYYQSVLGVPIPVWVFALVAVAGAVILNRTPFGQHVQAIGSNEQVARYAAIRVDRVKMLTYLLLGVCVAVATILYVPRLGSATPTTGILWELEAIAAVVVGGTSLKGGAGRIMGTVVGAILLSVIGNLLNLTSIISVYLNAAVQGVVIITVAYLQRGRR

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Crispr_ID: NZ_CP046904_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP046904_3

1598496-1598578

Orphan

Consensus_repeat	Method
CCGCCAACAAGTTCGGGTGACAG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP046904_3

>merge|NZ_CP046904|3|1598496-1598578|CRISPRCasFinder
CCGCCAACAAGTTCGGGTGACAGAGCCGCCCGCCGATGGCCAACCGGCTCACAGACGAGCCCGCCAACAAGCTCGGGTGACAG

>NZ_CP046904|3|2|1598496-1598578|CRISPRCasFinder
CCGCCAACAAGTTCGGGTGACAG	AGCCGCCCGCCGATGGCCAACCGGCTCACAGACGAGC
CCGCCAACAAGCTCGGGTGACAG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP046904.1\|WP_145873396.1\|1593563_1594058_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP046904.1\|WP_145873394.1\|1594602_1594824_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP046904.1\|WP_145873384.1\|1607143_1607671_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP046904.1\|WP_145873395.1\|1594139_1594430_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|368682
NZ_CP046904.1\|WP_145873383.1\|1608596_1610015_-\|glutamate--tRNA-ligase	unknown	unknown	gnl\|CDD\|234953
NZ_CP046904.1\|WP_145873398.1\|1591472_1593197_+\|acid-phosphatase	unknown	unknown	gnl\|CDD\|274562
NZ_CP046904.1\|WP_145873392.1\|1596746_1598336_-\|amidase	unknown	unknown	gnl\|CDD\|236161
NZ_CP046904.1\|WP_145873399.1\|1590657_1591218_-\|DUF2239-family-protein	unknown	unknown	gnl\|CDD\|378346
NZ_CP046904.1\|WP_145873386.1\|1603804_1605685_-\|cytochrome-c-oxidase-subunit-I	unknown	unknown	gnl\|CDD\|213748
NZ_CP046904.1\|WP_145873389.1\|1601958_1602327_-\|cytochrome-C-oxidase-subunit-IV	unknown	unknown	gnl\|CDD\|227892
NZ_CP046904.1\|WP_145873388.1\|1602333_1603047_-\|bb3-type-cytochrome-oxidase-subunit-IV	unknown	unknown	gnl\|CDD\|239215
NZ_CP046904.1\|WP_145873393.1\|1594988_1596407_+\|ATP-dependent-RNA-helicase-DbpA	unknown	unknown	gnl\|CDD\|236977
NZ_CP046904.1\|WP_145873400.1\|1590328_1590661_-\|GIY-YIG-nuclease-family-protein	unknown	unknown	gnl\|CDD\|198398
NZ_CP046904.1\|WP_145873397.1\|1593267_1593555_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP046904.1\|WP_145873387.1\|1603058_1603808_-\|bb3-type-cytochrome-oxidase-subunit-III	unknown	unknown	gnl\|CDD\|239216
NZ_CP046904.1\|WP_145873385.1\|1605795_1607136_-\|c-type-cytochrome	unknown	unknown	gnl\|CDD\|224537
NZ_CP046904.1\|WP_145873390.1\|1600812_1601679_+\|NAD(P)H-binding-protein	unknown	unknown	gnl\|CDD\|187578
NZ_CP046904.1\|WP_145874033.1\|1599294_1600446_-\|elongation-factor-P-maturation-arginine-rhamnosyltransferase-EarP	unknown	unknown	gnl\|CDD\|378385
NZ_CP046904.1\|WP_145873391.1\|1598651_1599227_-\|elongation-factor-P	unknown	unknown	gnl\|CDD\|234788
NZ_CP046904.1\|WP_145873401.1\|1589183_1590332_+\|methyltransferase	unknown	unknown	gnl\|CDD\|225443

Protein	Function_ID	Function_description	E-value
NZ_CP046904.1\|WP_145873395.1\|1594139_1594430_-\|hypothetical-protein	gnl\|CDD\|368682	pfam05954, Phage_GPD, Phage late control gene D protein (GPD). This family includes a number of phage late control gene D proteins and related bacterial sequences. This family also includes Bacteriophage Mu P proteins and related sequences.	1.05562e-09
NZ_CP046904.1\|WP_145873383.1\|1608596_1610015_-\|glutamate--tRNA-ligase	gnl\|CDD\|234953	PRK01406, gltX, glutamyl-tRNA synthetase; Reviewed.	0
NZ_CP046904.1\|WP_145873398.1\|1591472_1593197_+\|acid-phosphatase	gnl\|CDD\|274562	TIGR03397, acid_phos_Burk, acid phosphatase, Burkholderia-type. A member of this family, AcpA from Burkholderia mallei, has been charactized as a surface-bound glycoprotein with acid phosphatase activity, as can be shown with the colorigenic substrate 5-bromo-4-chloro-3-indolyl phosphate. This family shares regions of sequence similarity with phosphocholine-preferring phospholipase C enzymes (TIGR03396) from many of the same species.	0
NZ_CP046904.1\|WP_145873392.1\|1596746_1598336_-\|amidase	gnl\|CDD\|236161	PRK08137, PRK08137, amidase; Provisional.	0
NZ_CP046904.1\|WP_145873399.1\|1590657_1591218_-\|DUF2239-family-protein	gnl\|CDD\|378346	pfam09998, DUF2239, Uncharacterized protein conserved in bacteria (DUF2239). This domain, found in various hypothetical bacterial proteins, has no known function.	1.20686e-84
NZ_CP046904.1\|WP_145873386.1\|1603804_1605685_-\|cytochrome-c-oxidase-subunit-I	gnl\|CDD\|213748	TIGR02891, Probable_cytochrome_c_oxidase_subunit_1-beta, cytochrome c oxidase, subunit I. This large family represents subunit I's (CtaD, CoxA, CaaA) of cytochrome c oxidases of bacterial origin. Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits I-III form the functional core of the enzyme complex. Subunit I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit II and heme a of subunit I to the bimetallic center formed by heme a3 and copper B. This cytochrome c oxidase shows proton pump activity across the membrane in addition to the electron transfer. In the bacilli an apparent split (paralogism) has created a sister clade (TIGR02882) encoding subunits (QoxA) of the aa3-type quinone oxidase complex which reacts directly with quinones, bypassing the interaction with soluble cytochrome c. This model attempts to exclude these sequences, placing them between the trusted and noise cutoffs. These families, as well as archaeal and eukaryotic cytochrome c subunit I's are included within the superfamily model, pfam00115. [Energy metabolism, Electron transport].	0
NZ_CP046904.1\|WP_145873389.1\|1601958_1602327_-\|cytochrome-C-oxidase-subunit-IV	gnl\|CDD\|227892	COG5605, COG5605, Predicted small integral membrane protein [Function unknown].	3.01014e-37
NZ_CP046904.1\|WP_145873388.1\|1602333_1603047_-\|bb3-type-cytochrome-oxidase-subunit-IV	gnl\|CDD\|239215	cd02864, Heme_Cu_Oxidase_III_1, Heme-copper oxidase subunit III subfamily. Heme-copper oxidases are transmembrane protein complexes in the respiratory chains of prokaryotes and mitochondria which couple the reduction of molecular oxygen to water to, proton pumping across the membrane. The heme-copper oxidase superfamily is diverse in terms of electron donors, subunit composition, and heme types. This superfamily includes cytochrome c and ubiquinol oxidases. Bacterial oxidases typically contain 3 or 4 subunits in contrast to the 13 subunit bovine cytochrome c oxidase (CcO). Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Subunits I, II and III of ubiquinol oxidase are homologous to the corresponding subunits in CcO. Although not required for catalytic activity, subunit III is believed to play a role in assembly of the multimer complex. Rhodobacter CcO subunit III stabilizes the integrity of the binuclear center in subunit I. It has been proposed that Archaea acquired heme-copper oxidases through gene transfer from Gram-positive bacteria.	7.06115e-105
NZ_CP046904.1\|WP_145873393.1\|1594988_1596407_+\|ATP-dependent-RNA-helicase-DbpA	gnl\|CDD\|236977	PRK11776, PRK11776, ATP-dependent RNA helicase DbpA; Provisional.	0
NZ_CP046904.1\|WP_145873400.1\|1590328_1590661_-\|GIY-YIG-nuclease-family-protein	gnl\|CDD\|198398	cd10451, GIY-YIG_LuxR_like, GIY-YIG domain of LuxR and ArsR family transcriptional regulators, and uncharacterized hypothetical proteins found in bacteria. The family includes some bacterial LuxR and ArsR family transcriptional regulators. The a C-terminal conserved domain shows sequence similarity to the N-terminal catalytic GIY-YIG domains of intron-encoded homing endonucleases. Besides, they have an N-terminally fused transcriptional regulators module, comprising the winged helix-turn-helix (wHTH) domain and uncharacterized domain DUF2087. At this point, they are distinct from GIY-YIG homing endonucleases, which typically contain a variety of C-terminally fused nuclease-associated modular DNA-binding domains (NUMODs). Moreover, some key residues relevant to catalysis in GIY-YIG endonucleases are mutanted or absent in this family, which suggests that members in this family might lose the catalytic function that GIY-YIG endonucleases possess. This family also includes many uncharacterized hypothetical proteins that consist of a standalone GIY-YIG like domain.	1.48076e-36
NZ_CP046904.1\|WP_145873387.1\|1603058_1603808_-\|bb3-type-cytochrome-oxidase-subunit-III	gnl\|CDD\|239216	cd02865, Heme_Cu_Oxidase_III_2, Heme-copper oxidase subunit III subfamily. Heme-copper oxidases are transmembrane protein complexes in the respiratory chains of prokaryotes and mitochondria which couple the reduction of molecular oxygen to water to, proton pumping across the membrane. The heme-copper oxidase superfamily is diverse in terms of electron donors, subunit composition, and heme types. This superfamily includes cytochrome c and ubiquinol oxidases. Bacterial oxidases typically contain 3 or 4 subunits in contrast to the 13 subunit bovine cytochrome c oxidase (CcO). Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Subunits I, II and III of ubiquinol oxidase are homologous to the corresponding subunits in CcO. Although not required for catalytic activity, subunit III is believed to play a role in assembly of the multimer complex. Rhodobacter CcO subunit III stabilizes the integrity of the binuclear center in subunit I. It has been proposed that Archaea acquired heme-copper oxidases through gene transfer from Gram-positive bacteria.	1.04021e-29
NZ_CP046904.1\|WP_145873385.1\|1605795_1607136_-\|c-type-cytochrome	gnl\|CDD\|224537	COG1622, CyoA, Heme/copper-type cytochrome/quinol oxidases, subunit 2 [Energy production and conversion].	6.4592e-55
NZ_CP046904.1\|WP_145873390.1\|1600812_1601679_+\|NAD(P)H-binding-protein	gnl\|CDD\|187578	cd05269, TMR_SDR_a, triphenylmethane reductase (TMR)-like proteins, NMRa-like, atypical (a) SDRs. TMR is an atypical NADP-binding protein of the SDR family. It lacks the active site residues of the SDRs but has a glycine rich NAD(P)-binding motif that matches the extended SDRs. Proteins in this subgroup however, are more similar in length to the classical SDRs. TMR was identified as a reducer of triphenylmethane dyes, important environmental pollutants. This subgroup also includes Escherichia coli NADPH-dependent quinine oxidoreductase (QOR2), which catalyzes two-electron reduction of quinone; but is unlikely to play a major role in protecting against quinone cytotoxicity. Atypical SDRs are distinct from classical SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif.	1.53395e-73
NZ_CP046904.1\|WP_145874033.1\|1599294_1600446_-\|elongation-factor-P-maturation-arginine-rhamnosyltransferase-EarP	gnl\|CDD\|378385	pfam10093, EarP, Elongation-Factor P (EF-P) rhamnosyltransferase EarP. This entry includes family members such as EarP enzymes which are essential for post-translational activation of elongation factor P(EF-P). It was identified as EF-P arginine R32 specific rhamnosyl transferase in Shewanella oneidensis using dTDP-beta-L-rhamnose as donor substrate. This was further confirmed for Pseudomonas aeruginosa, Pseudomonas putida, and Neisseria meningitidis. As for S. oneidensis and P. aeruginosa, EarP enzyme acts as an inverting glycosyltransferase, thus mediating the formation of an alpha-L-rhamnosidic linkage. Structural analysis show that EarP is composed of two opposing domains with Rossmann folds, thus constituting a B pattern-type glycosyltransferase (GT-B) and provide basis for arginine glycosylation by EarP. Mutational analysis of efp and earP genes, resulted in a substantial decrease in the production of rhamnolipids and pyocyanin (important factors for colonization and invasion during infection) of P. aeruginosa. Collectively this indicates that EarP and EF-P are essential for P. aeruginosa pathogenicity.The protein family is also annotated in the CaZy Database as GT104.	0
NZ_CP046904.1\|WP_145873391.1\|1598651_1599227_-\|elongation-factor-P	gnl\|CDD\|234788	PRK00529, PRK00529, elongation factor P; Validated.	1.28365e-81
NZ_CP046904.1\|WP_145873401.1\|1589183_1590332_+\|methyltransferase	gnl\|CDD\|225443	COG2890, HemK, Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis].	4.12832e-26

>NZ_CP046904.1|WP_145873392.1|1596746_1598336_-|amidase
MDRREFVRMGLAVGGAAAVTPVHAVPKALQGGLLDTGVREQQQLMSSNKLTSHALTSQYLARIGKIDKSGPRINAIIELNPEALKIAREMDRERMARKVRGPLHGIPVLLKDNIATADRMSTTAGSLALDGVRAARDAHVVARLREAGAVILGKTNLSEWANMRSTHSVSGWSGRGGLTRNPYALDRNCSGSSSGSAAAITASLATLAVGTETDGSIVSPASICGLVGIKPTIGLVSRSGIIPIAASQDTAGPMARSVTDAALMLAVLAGPDPLDPVTQQGTHDTDYAKALDRNALRGKRLGVARNFFGSSDELDDAIEKALLVLQGQGAVLVDVQVPNTDKYGDTETAVLLHEFKPGLADYLKDYAPGAPIRNMADLIAFNRRHADKELRYFGQEHLEQSQAKAGLDSPDYQAALANNHRYARDEGIDKVMKEYGLDALVAPTGGPAWLTDFVNGDHYGGSFSSPAAVAGYPHITVPAGHVHGLPVGLSFVGGPYTESALIGMAYAYEQATHLRRAPTFPASIPLKVR
>NZ_CP046904.1|WP_145873393.1|1594988_1596407_+|ATP-dependent-RNA-helicase-DbpA
MTSFSSLPLSDAFLANLAQLGYHTMTPIQAASLPPVLEGRDLIAQAQTGSGKTAAFGIGLLYNVNPAWFATQALVMCPTRELADQVANELRRLARSVANIKVLVLTGGAPMRPQIASLEHGAHIVVGTPGRIRDHIGRQTLDLSGVRTLVLDEADRMTDMGFYDDIAAIVKLCPKRRQTLLFSATYPQDIRQATEAFLVDPVEVVVEAQHAQSTIEQRFYEIGFDERDDAVARLLRHFKPASAIVFCNTKAHCRELVDTLRAQGFSALALYGELEQRERDEILVLFANRSCQILVATDVAARGLDIQDLEAVINADVSKDTEVHVHRIGRTGRAGGSGLSLTLCAPNEKKWVKLIEEYQGGPVDWHPLSELDEDDPGHGDPAPMLTLCIAGGKKDKLRPGDVLGALTGEAKLAKEHVGKINVFEFQTYVALDRRIAHDAFDRLAAASRIAGDFGSEFGAIKGRNFKMRFIDV
>NZ_CP046904.1|WP_145873394.1|1594602_1594824_+|hypothetical-protein
MRDKKDNATFDLPGFGSAEPLAPEPKKPPPPRARRAALKQEQLELLEPTDATGLPVWQRDENLDVTGLPVWQN
>NZ_CP046904.1|WP_145873395.1|1594139_1594430_-|hypothetical-protein
MHYNVVFLLTFAVGLRRQGKLAPAWRLDIANSGVCVRRSTITQYLESDLAFVERSMSEEGMLYFFENDGDAASRGLGRHTLPASPSCVCATSPTAA
>NZ_CP046904.1|WP_145873396.1|1593563_1594058_-|hypothetical-protein
MTKTTPQYDSGDTFVIEGVITELQVALGRENLLARIDRHYRAGSAATALGDALSGFHGQVAAAASVALYDGEDTENFACLIDKQIMCGTFGGASKLPAGKKVRAVVSRHEDVLIARGILSEDKGLVWVPHAWGSKPSAKSISRSLHGVSASPCWVSPPAHSSLA
>NZ_CP046904.1|WP_145873397.1|1593267_1593555_-|hypothetical-protein
MSELETIGWGAVAAGALCFGLALSTGGTMKALADPATDIFRKLGFADPERVNLNSYQYGIVHIHELVHSPEMRANHANIHCYKKAIADGKLKLAQ
>NZ_CP046904.1|WP_145873398.1|1591472_1593197_+|acid-phosphatase
MGPRLDAAVRDVTLRHFVAIQEPRVSDHNDSPTKPSRRRLFQAAAAAGAIGALPALNQESAAAPKAASKPVKGSLDAKLKAHVKNVVVIYLENRSFNNLFAGFPGVAQPLADVPPEQYRQRDYDGSVLPELPKVWGGIMAAPQEVAGKRYELKEDDVKGLPNAPFELKDVNGKPLPESIVTRDLWHRFYQNQMQINGGKNDGFVAWTDAGGLVMGHYGQTHKNLGLWQVAREYTLCDNFFMAAFGGSYLNHQFLISGRTPEYFNAKDTKAKKKIAVLADGPTGSRLALAPDSPKSALEGRAKFVNDGAITPDGYAVNTMSPPYQPSYVRPAPGGDPLHADPLDASVLPPQTYDTIGDLLSKKGVSWAWYAGAWQAALDDKGGGSKPNFQAHHQPFNYFRNYAPGTAARAEHLRDGGLGDSPISNRFLADVVAGKLPAVSFYKPQGNLNLHAGYSDIESGDQHIVNVLEHLKHSPQWDNMVIVLTFDENGGWWDHVAPPQGDRWGPGSRIPALVVSPFAKKGAVDHSFYDTTSILRFITRRFDLPLLEGLALRNKACAARGALPPGDLTGALAFR
>NZ_CP046904.1|WP_145873399.1|1590657_1591218_-|DUF2239-family-protein
MTTYTSFHGDRLIAAGDMSANAQAVRQALAQQGAGAVLTFDDGTGTQVDIDLRTSEAPQPAAQEQEHMPAAEPRGRGRPRLGVVAREVTLLPRHWEWLEAQPGGASVTLRKLVEEARRVHADRDARRAAQERAYRVMNALAGNLPGYEEATRALFADDAALFARHAQGWPRDVLTYVTRLAFGEQP
>NZ_CP046904.1|WP_145873400.1|1590328_1590661_-|GIY-YIG-nuclease-family-protein
MNADKRELKRQYREQGPQAGVYLVRGSSGRAIVAGSTDVNGALNRHRFELKMKMHRDAELQRDWAAHGEAGVEFQVLDVIEPRDDPAFDLKHELATLAAMWREELGLPEA
>NZ_CP046904.1|WP_145873401.1|1589183_1590332_+|methyltransferase
MQAAPPLIHWTEQGTDHAVRWHSEAGMPPPKRVAVADDTMNADTAYRLACEGTALLWRGDFQNARQLLQALARRADHKHGKGKKKPAKVAASPTEAFHLHRQAQSQRARTLAMLLIPFEPGYTIPLRRAPDVKLACNEAYGRGDDAFVISLRELLGLVGAHEWRKAGVAIPALGARIHPHYGVFSPVRGEYVQLVADTPLPKNTKVAFDIGAGTGVLSAVLARRGVPQVIATDMDRRALSCARENIARLGLDEQVQLLEADMFPPGRAPLVVCNPPWVPARPSSSIEHAVYDPESRMLKAFLAGLKDHLSEGGEGWLILSDLAEHLGLRPREHLLEWIAQAGLVVLGRHDVRPVHPKATDADDPLHAARAAEVTSLWRLGAA
>NZ_CP046904.1|WP_145873391.1|1598651_1599227_-|elongation-factor-P
MKPAKEIRVGNIIMVDAKPFIVLRSDVNGSSRTGFTYKWKMKNLLTNAPLENVFRGDDKFDVVILDKKPVTYSYFADPLYVFMDEEYNQYEIEEENLGDALNYLKDGMECEAVFYDGKAISVELPTTIVRQVVYSEPAVKGNTSGNVLKEAKIENAIESKRHSVQVPLFVSQDDFIEIDTRTNEYKRIIRN
>NZ_CP046904.1|WP_145874033.1|1599294_1600446_-|elongation-factor-P-maturation-arginine-rhamnosyltransferase-EarP
MNQPTTLALFCKVVDNYGDIGICWRLARQLAHEHGIAVTLWVDDLKSFARIHPGVDATAQAQQVDGVAVYHWRDQEGTYFAEDVADIVIEFFAVDLPPGYVTAMAQRQVKPVWLNLEGLTAEEWVEGCHTLPSMHPRLPLTKHFFFPGFTAKTGGLLREAGLLEERDRFQRDPVAVTAFLGTLGLTPSQQAARKVSLFCYPHAPAAELFDAWRRGGEPVTCLVPEGVVRDDVRAFLGAEPVAGASRTDGPLTVRVLPFVPQPDYDRLLWACDVNIVRGEDSFVRAQWANRPFAWHIYPQDENLHLKKLRAFIARYCPDIASLEEFTLRFNGAGVEQNQDWLHLWQTLSSHIDQLACLSANWQKRMLENGDLASNLLSFAGSLR
>NZ_CP046904.1|WP_145873390.1|1600812_1601679_+|NAD(P)H-binding-protein
MTSIHLLVTGASGQLGQLVLQHLARLAPGGHTVIAASRTPERCAAPFAIARHADFDDATTLDAAFDGVHRMLLISTALDNVGPRRIAQHRNAIDAAMRAGVEHIVYTSLLHPDASPLGAVAEDHAQTEALLRASGIAHTVLRNGFYMDPLCQTIAAALPSGVLVSANRTGRVSYIARDDCARAAACALLAPAGTRTLDIAGPEALDGADIARIAAAACSRPLTFQGVSTAERVDGLVSEGTPPQLARMIAHVETALESGVMAAAPGSYTMLTGQAPRSLQSLLPSPSM
>NZ_CP046904.1|WP_145873389.1|1601958_1602327_-|cytochrome-C-oxidase-subunit-IV
MDATHQEPTHLEATPAEASHAAKGQQHPIGLYFKVWGLLFLLSALSYLVDVLHLQGLLRWSLILLLMLAKAGLIVAVFMHLRWERLALICLVVVPPAALLVLAGMMVAESEYVFLLRSTYFR
>NZ_CP046904.1|WP_145873388.1|1602333_1603047_-|bb3-type-cytochrome-oxidase-subunit-IV
MSAQQEWIQPDGKPQHGWRAARARLAASVVSDLAGDRQAFRVPWGKAMMWIFLLSDTFIFGSFLTGYMSVRMATTTQWPNPSEVFALTIGGRTLPLILIAIMTFVLISSSGTMAMAVNYAYRRERKRCATLMLVTAAFGALFVSMQAFEWSKLIAEGVRPWGNPMGSAQFGASFFMITGFHGLHVTAGGIYLSIVARNVLRGRYERAGNYGIVEIAGLYWHFVDLVWVFIFALFYLW
>NZ_CP046904.1|WP_145873387.1|1603058_1603808_-|bb3-type-cytochrome-oxidase-subunit-III
MMRFIICPLPRCGFQPDGYWPGDGAAPYGTRQVGLWTFMGVVCVLFALFGVAYVMRIGYDDWRVLPAAPWQLWLSTALLGTGDAVWQLAALAAMRRRRVLAHRLAVLGVALALAFIASQLGAWRALATQHAGLGSGPAAAFFYMLTGLHGVHVLGGVIAAGRVVLRFGGGDRAGVRAGERAGEGAGKRVVNRAGGGGRVDIVRISESLALCARYWHLLLALWLALFGLLFWVTPDVVQTICSTVGIPVR
>NZ_CP046904.1|WP_145873386.1|1603804_1605685_-|cytochrome-c-oxidase-subunit-I
MAHETNAEQGAEPEAHAPSGFWTRYVWSQDHKVIAVQYTLTALAVGVIGIVLSDLMRLQLGFPGRFEFIDPNSYYQYMTMHGMIMVIYLLTAIFLGGFGNYLIPLMVGARDMVFPYLNMLSFWFYLAAVAILVGSFFVPGGPTGAGWTLYPPQAILPGTPGVEAGIVVMLVSLLVFIAAATMGGLNYVTTILQARTRGMTLMRMPLTVWGIFIATVLALFAFPALFVSGVMMLLDRTLGTSFFMPAIVSMGQALNYRGGSPLLFQHLFWFFGHPEVYIVALPAFGIISDLISVHARKCIFGYRMMVWAIVIIGALSFVVWAHHMYVSGMHPLFGFFFAITTLVIAVPTALKVYNWTLTLWRGDIHLTAPMLFALGFISTFLIGGLTGLFLGNVSVDIPLSNTYFVVAHFHMVMGVSPVLAVFGGLYHWYPKVTGRMYHEGLARLHFWITFVGAYAIFFPMHYLGLLGMPRRYYAFDNYNFIPPSAQSLNAFITVVALVVGLAQLLFLANFAWSVRNGRPAGPNPWRAASLEWQTPQTPPVHGNWGNELPVVYRGPYDYGRAGAADAGTTEAGAAEAGVAEVVADYLPQNVGPDEGDEPDEDDEDDQGRARARPPGTAVPREGGQGT
>NZ_CP046904.1|WP_145873385.1|1605795_1607136_-|c-type-cytochrome
MAVALAVVLVLIALGAVAFHFASPWQPTAIASNWQSMDEALRLTMVITGVAFVALHLFVAYAVVRYRHRAGHRASLEHGNRRLEWWLIGITTLGIIGLLAPGLTVYARLIDAPPDARVFEVMGQQWQWHYRLPGADGRLGAADVRFIAAANPFGIDPEDPYGQDDVLVDGQELHLPVGIPARAQLRAQDVLHDFYVPQFRTRMNMVPGMVTHFWFTPERTGRYEVLCAQLCGVGHSNMRSWVVIDEPGAYGAWLAHQPTFGGGPAVPGGAGRAAGAGQASSAGQGGAGSAAGPGGSAGPTGPPGPAGSSGGGGMAGKAGTAGAAGAAGTAGMAGAIGAGGTAGTQGVPGGPAEPGKAGRLLAQAKGCTACHSVDGSRGVGPSWKGLYGKSEVLQGGATVHVDEAYLRQSIAAPQAAIVQGYAPVMPPVQLSAAEQAALVDYIKTLR
>NZ_CP046904.1|WP_145873384.1|1607143_1607671_-|hypothetical-protein
MELHGIESYLQRILHPQTHSHRWTAREPDWVVGALAGFAAGGIVMVLELAFAAVAGIDPWRTPRLIAALVLGDPVLQVGGYSMAVVVGALAVHYFLGTFFGLVLAGLMAPFRFDSSIAMALVAGAVFGALLYLFDFYVMASVLPWFTELRGWTTVLGHVVFGMTAALIYRVLRRR
>NZ_CP046904.1|WP_145873383.1|1608596_1610015_-|glutamate--tRNA-ligase
MTTDATPAATPVRTRFAPSPTGFLHLGGARTALYSWAYARHFGGTFVLRIEDTDLERSTPEAVQAILDGMQWLGLDHDEGPFYQMQRMDRYREVIAQMLEADTAYHCYCTPEEVEAMRERLRAAGEKPRYDGTWRPEPGKVLPAVPEGRKPVVRFRNPLDGDVTWHDVVKGPITISNKELDDLVIARTDGTPTYNFCVAVDDWDMRITHVLRGDDHVNNTPRQINILRAIGAPLPQYGHLPMILGSDGQKLSKRHGAVSVMEYPAQGFLPEAMLNYLARLGWSHGDDEVFSMEQFCEWFNLEHLTASPAQFNNEKLAWLNNHWIKQADNARLAELARPRMLAAGAVFDGAPDLATVLGLLKERTNTVNELADAAMLFYRAPQPDAALMTQHFTDAVKPALAAFAERINKIEWTKEAIAAMLKEVLAAHGLKMPQLAMPLRLIVTGQLQTPAIDAVLQLFGRDEVMARVARYL

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Crispr_ID: NZ_CP046904_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP046904_4

2458682-2458825

Orphan

Consensus_repeat	Method
GGAAATGCGGGTGTCAAACTAAAAATAACTGTTCAGCACCAAATAAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP046904_4

>merge|NZ_CP046904|4|2458682-2458825|CRISPRCasFinder
GGAAATGCGGGTGTCAAACTAAAAATAACTGTTCAGCACCAAATAAAGTGCAATCGTGTAGGAATTTGGCAACACCCGCGCGGTTCGTCGGATGAACGGAAATGCGGGTATCAAACTAAAAATAACTGTTCAGCACCAAATAAA

>NZ_CP046904|4|3|2458682-2458825|CRISPRCasFinder
GGAAATGCGGGTGTCAAACTAAAAATAACTGTTCAGCACCAAATAAA	GTGCAATCGTGTAGGAATTTGGCAACACCCGCGCGGTTCGTCGGATGAAC
GGAAATGCGGGTATCAAACTAAAAATAACTGTTCAGCACCAAATAAA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP046904.1\|WP_145874947.1\|2458890_2460447_+\|tryptophan-7-halogenase	unknown	unknown	gnl\|CDD\|368139
NZ_CP046904.1\|WP_145874936.1\|2463228_2465070_-\|dihydrolipoyl-dehydrogenase	unknown	unknown	gnl\|CDD\|180579
NZ_CP046904.1\|WP_145874953.1\|2454051_2454405_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP046904.1\|WP_145874955.1\|2453053_2453734_+\|isochorismatase-family-protein	unknown	unknown	gnl\|CDD\|238494
NZ_CP046904.1\|WP_145874927.1\|2469839_2470685_+\|bifunctional-methylenetetrahydrofolate-dehydrogenase/methenyltetrahydrofolate-cyclohydrolase-FolD	unknown	unknown	gnl\|CDD\|184559
NZ_CP046904.1\|WP_145874925.1\|2470707_2472801_+\|M3-family-metallopeptidase	unknown	unknown	gnl\|CDD\|341051
NZ_CP046904.1\|WP_145874965.1\|2444657_2445977_+\|beta-glucosidase	unknown	unknown	gnl\|CDD\|274539
NZ_CP046904.1\|WP_145874944.1\|2460443_2461454_+\|LacI-family-DNA-binding-transcriptional-regulator	unknown	unknown	gnl\|CDD\|380513
NZ_CP046904.1\|WP_145874932.1\|2466762_2469459_-\|pyruvate-dehydrogenase-(acetyl-transferring),-homodimeric-type	unknown	unknown	gnl\|CDD\|236500
NZ_CP046904.1\|WP_145874963.1\|2446047_2447394_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|341039
NZ_CP046904.1\|WP_158206712.1\|2454550_2455981_-\|PEP-CTERM-sorting-domain-containing-protein	unknown	unknown	gnl\|CDD\|226675
NZ_CP046904.1\|WP_145874957.1\|2452142_2453030_+\|alpha/beta-fold-hydrolase	unknown	unknown	gnl\|CDD\|366166
NZ_CP046904.1\|WP_145874939.1\|2461847_2462852_+\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|227311
NZ_CP046904.1\|WP_145874933.1\|2465082_2466741_-\|dihydrolipoyllysine-residue-acetyltransferase	unknown	unknown	gnl\|CDD\|237000
NZ_CP046904.1\|WP_145874941.1\|2461457_2461766_-\|DUF1272-domain-containing-protein	unknown	unknown	gnl\|CDD\|377732
NZ_CP046904.1\|WP_145874959.1\|2451160_2452072_+\|alpha/beta-fold-hydrolase	unknown	unknown	gnl\|CDD\|223669
NZ_CP046904.1\|WP_145875874.1\|2447977_2450836_-\|ATPase	unknown	unknown	gnl\|CDD\|226418
NZ_CP046904.1\|WP_145874929.1\|2469526_2469799_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP046904.1\|WP_145874949.1\|2456097_2458548_-\|TonB-dependent-receptor-plug-domain-containing-protein	unknown	unknown	gnl\|CDD\|238657
NZ_CP046904.1\|WP_145874961.1\|2447405_2447981_+\|cupin-domain-containing-protein	unknown	unknown	gnl\|CDD\|380359

Protein	Function_ID	Function_description	E-value
NZ_CP046904.1\|WP_145874947.1\|2458890_2460447_+\|tryptophan-7-halogenase	gnl\|CDD\|368139	pfam04820, Trp_halogenase, Tryptophan halogenase. Tryptophan halogenase catalyzes the chlorination of tryptophan to form 7-chlorotryptophan. This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent.	2.27488e-156
NZ_CP046904.1\|WP_145874936.1\|2463228_2465070_-\|dihydrolipoyl-dehydrogenase	gnl\|CDD\|180579	PRK06467, PRK06467, dihydrolipoamide dehydrogenase; Reviewed.	0
NZ_CP046904.1\|WP_145874955.1\|2453053_2453734_+\|isochorismatase-family-protein	gnl\|CDD\|238494	cd01012, YcaC_related, YcaC related amidohydrolases; E.coli YcaC is an homooctameric hydrolase with unknown specificity. Despite its weak sequence similarity, it is structurally related to other amidohydrolases and shares conserved active site residues with them. Multimerisation interface seems not to be conserved in all members.	2.50879e-49
NZ_CP046904.1\|WP_145874927.1\|2469839_2470685_+\|bifunctional-methylenetetrahydrofolate-dehydrogenase/methenyltetrahydrofolate-cyclohydrolase-FolD	gnl\|CDD\|184559	PRK14189, PRK14189, bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase.	0
NZ_CP046904.1\|WP_145874925.1\|2470707_2472801_+\|M3-family-metallopeptidase	gnl\|CDD\|341051	cd06456, M3A_DCP, Peptidase family M3, dipeptidyl carboxypeptidase (DCP). Peptidase family M3 dipeptidyl carboxypeptidase (DCP; Dcp II; peptidyl dipeptidase; EC 3.4.15.5). This metal-binding M3A family also includes oligopeptidase A (OpdA; EC 3.4.24.70). DCP cleaves dipeptides off the C-termini of various peptides and proteins, the smallest substrate being N-blocked tripeptides and unblocked tetrapeptides. DCP from Escherichia coli is inhibited by the anti-hypertensive drug captopril, an inhibitor of the mammalian angiotensin converting enzyme (ACE, also called peptidyl dipeptidase A). OpdA may play a specific role in the degradation of signal peptides after they are released from precursor forms of secreted proteins. It can also cleave N-acetyl-L-Ala. This family also includes Arabidopsis thaliana organellar oligopeptidase OOP (At5g65620), which plays a role in targeting peptide degradation in mitochondria and chloroplasts; it degrades peptide substrates that are between 8 to 23 amino acid residues, and shows a weak preference for hydrophobic residues (F/L) at the P1 position.	0
NZ_CP046904.1\|WP_145874965.1\|2444657_2445977_+\|beta-glucosidase	gnl\|CDD\|274539	TIGR03356, BGL, beta-galactosidase.	0
NZ_CP046904.1\|WP_145874944.1\|2460443_2461454_+\|LacI-family-DNA-binding-transcriptional-regulator	gnl\|CDD\|380513	cd06290, PBP1_LacI-like, ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type 1 periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.	4.54342e-126
NZ_CP046904.1\|WP_145874932.1\|2466762_2469459_-\|pyruvate-dehydrogenase-(acetyl-transferring),-homodimeric-type	gnl\|CDD\|236500	PRK09405, aceE, pyruvate dehydrogenase subunit E1; Reviewed.	0
NZ_CP046904.1\|WP_145874963.1\|2446047_2447394_+\|MFS-transporter	gnl\|CDD\|341039	cd17486, MFS_AmpG_like, AmpG and similar transporters of the Major Facilitator Superfamily. AmpG acts as an inner membrane permease in the beta-lactamase induction system and in peptidoglycan recycling. It transports meuropeptide from the periplasm into the cytosol in gram-negative bacteria, which is essential for the induction of the ampC encoding beta-lactamase. The AmpG family belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	4.24735e-78
NZ_CP046904.1\|WP_158206712.1\|2454550_2455981_-\|PEP-CTERM-sorting-domain-containing-protein	gnl\|CDD\|226675	COG4222, COG4222, Uncharacterized protein conserved in bacteria [Function unknown].	1.00121e-49
NZ_CP046904.1\|WP_145874957.1\|2452142_2453030_+\|alpha/beta-fold-hydrolase	gnl\|CDD\|366166	pfam00561, Abhydrolase_1, alpha/beta hydrolase fold. This catalytic domain is found in a very wide range of enzymes.	1.58443e-28
NZ_CP046904.1\|WP_145874939.1\|2461847_2462852_+\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|227311	COG4977, COG4977, Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain [Transcription].	1.0019e-75
NZ_CP046904.1\|WP_145874933.1\|2465082_2466741_-\|dihydrolipoyllysine-residue-acetyltransferase	gnl\|CDD\|237000	PRK11855, PRK11855, dihydrolipoamide acetyltransferase; Reviewed.	0
NZ_CP046904.1\|WP_145874941.1\|2461457_2461766_-\|DUF1272-domain-containing-protein	gnl\|CDD\|377732	pfam06906, DUF1272, Protein of unknown function (DUF1272). This family consists of several hypothetical bacterial proteins of around 80 residues in length. This family contains a number of conserved cysteine residues and its function is unknown.	5.88985e-30
NZ_CP046904.1\|WP_145874959.1\|2451160_2452072_+\|alpha/beta-fold-hydrolase	gnl\|CDD\|223669	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only].	1.1015e-30
NZ_CP046904.1\|WP_145875874.1\|2447977_2450836_-\|ATPase	gnl\|CDD\|226418	COG3903, COG3903, Predicted ATPase [General function prediction only].	6.95934e-57
NZ_CP046904.1\|WP_145874949.1\|2456097_2458548_-\|TonB-dependent-receptor-plug-domain-containing-protein	gnl\|CDD\|238657	cd01347, ligand_gated_channel, TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) anti-parallel beta-barrel. Ligands apparently bind to the large extracellular loops. The N-terminal 150-200 residues form a plug from the periplasmic end of barrel. Energy (proton-motive force) and TonB-dependent conformational alteration of channel (parts of plug, and loops 7 and 8) allow passage of ligand. FepA residues 12-18 form the TonB box, which mediates the interaction with the TonB-containing inner membrane complex. TonB preferentially interacts with ligand-bound receptors. Transport thru the channel may resemble passage thru an air lock. In this model, ligand binding leads to closure of the extracellular end of pore, then a TonB-mediated signal facillitates opening of the interior side of pore, deforming the N-terminal plug and allowing passage of the ligand to the periplasm. Such a mechanism would prevent the free diffusion of small molecules thru the pore.	6.50737e-50
NZ_CP046904.1\|WP_145874961.1\|2447405_2447981_+\|cupin-domain-containing-protein	gnl\|CDD\|380359	cd02231, cupin_BLL6423-like, Bradyrhizobium japonicum BLL6423 and related proteins, cupin domain. This family includes bacterial and fungal proteins homologous to BLL6423, a Bradyrhizobium japonicum protein of unknown function; it includes a structure of an uncharacterized protein from Novosphingobium aromaticivorans. Proteins in this family belong to the cupin superfamily with a conserved "jelly roll-like" beta-barrel fold capable of homodimerization.	1.65375e-43

>NZ_CP046904.1|WP_145874949.1|2456097_2458548_-|TonB-dependent-receptor-plug-domain-containing-protein
MNTRTPRARRLGSPIQLAVLTLLAGINGAYAQTAGVNATPEAPKEQQQAQKAAEANSTVIPEVYVTATKRSTSLQRTPVAVTAISAATLDDNHVQTIQDVVNLVPGFSATSQGDHGVITMTMRGIGNDSAKTEYADPEVAVFVDGIYSPRPEGATTLLFDLDGIEVLRGPQGTLWGRNSTVGAVNMQTAKPTLGSTSGYIEAGMGDYARVGGRGAFNIPLSDTAAMRVAFVHEQHDGYVDYQTPPNVPLDQQRAAAAAVIAAANAKYPNNPIAFQPLSNAQFVQGGPKYNAQDQTALRLSLLWEIMPNLHWNVSYERYQDRGTPSMNLMQTPRAGQDLWSALIDTAPSLKRDSNSVRSRVDWAINPDMSLAYIAGWSSFRGSSTYDQDGGSYIPTSFTTGGKSQANNTLLSKYKSYSHEVELQSTGKKQVDWLLGLYYGHENNAMRFDIPIMNGTQQGTVNWQGSFIQPKETVESKAVFGQATWNINDQLHLTGGARYTDDKRENIGGIGWGWNDKADVPQLPISPSTNPATAGSGFALSSNNSGSFSGSKATWLGRISYDITPTSMLYASVSTGYKSGGLQDGGVPYGQETLTNYEVGSKSTFMNGKVRMNNALYYEKFKGFQFSAPVTNPDGSHSLSTYNAEGAKVYGFETEIAAKITPADRVQFTGTYTHAELGQLIGGSNDYTLPVCSIPGISNCLDVTGNTMPHSPKWSTQIMYQHVFQLPTGTLTPRLSAHWESASWLSVFNLGEPDRQSSYAKVDLGLRYDADKKYYVDLFVRNAGDKNIKTSAQNPQGVWQAQYLPPRTIGFNAGYTF
>NZ_CP046904.1|WP_158206712.1|2454550_2455981_-|PEP-CTERM-sorting-domain-containing-protein
MNKHTLHLAGATLLALSVAACGGDNDEQVPAVPTLAGFASLPADTYVDGPTSGQFITGGDLTNATANYGYTLPFVNKQPMQGFSAFATAFAGSCWYVMQDNGFGAKATSPDALLHVYAVKPDWASGKVQAANFTTCDTLAGFNADSYIRLRDPDRKLSYAIVADGVNYPGTSVSPAGRTIPVDPLIKSGKLLTGGDLDVESFVIDASGNLWFGDEFGPFLVKTDRTGKVLQKEVPLPNTFKLGTNPLVQSPSNPTLGTAAANLPNSGGFESMTINPAGTRIYTMLEQAMTTDTDPQRRILNVFDIVANTYLPNAYAYKVGTGTYVNAAGATMKEVFTVNDMTAINDHEFLVIEKDRGAGDARTGNYKASGADRVAARVKKVYKIDLNKVDSDGYLVKEEVADLMNLADPKGLGGAATINGVFTFPMESVEAVRIVDRHTIMIVNDSNYPGGTGGRSTTRPDNAEFILVRLPVGLNL
>NZ_CP046904.1|WP_145874953.1|2454051_2454405_-|hypothetical-protein
MSTPHQSTLMKSIVLFFVKALTFNVIFWMFWFLLLQPASSGGAKTQASATDEMIAKYNAQLKETARQTGEASRQMEVAAGLQKRYAALLELQEANERRHQVLLQTMEREAGIRHREP
>NZ_CP046904.1|WP_145874955.1|2453053_2453734_+|isochorismatase-family-protein
MTNSMPSKASVTPSGGGAMLLDPADTVVLLLDHQSGLFQTVKDIPVADLRRNVETIARLCTLLHIPVITTASEPAGTNGPLMPEIHDLAPHAVYVPRKGEVNAWDNDDFVGTVRATGRRTLVMAGVWTSVCVMFPALDARAAGYQVYAVIDASGDPSEMASRVSLARFVQGGVTPTTTNALLSELHRTWARPEAADLARLYGMVAPNYAAVAESYARAQQAAREAG
>NZ_CP046904.1|WP_145874957.1|2452142_2453030_+|alpha/beta-fold-hydrolase
MSAIPTTRHRSTSIAGLDIFHREAGPQDAPAVVLLHGFPSSSHMYRNLIPALADRYRVLAPDLPGFGLSSMPPRGSFPYGFAAFTDVVDAWLARLEVSSYALYVMDYGAPVGLRLALKHPERVTALVVQNGNAYEAGMGDFWASTRALWADDSQANRDAMRPFLTLEGTRFQYVTGVQDASRVDPAAWIHDQFFLDRAGNVDIQLDIIRDYRTNVALYPEFHRYFRDHQPPTLILWGDNDPIFLSAGAQAYLDDLPDAELHRFDTGHFALEDKADEMIAPMRRFLERTLHAHPAS
>NZ_CP046904.1|WP_145874959.1|2451160_2452072_+|alpha/beta-fold-hydrolase
MEEPMKPMQTAVQIEQPIPVVHYRTVNIDSVDVFYREAGPAGKPTLLLLHGFPTSSHMFRNLIPLLADRYHVIAPDYPGFGQSAAPDHKAFAYTFAHLADIVDKLTDALGITRYSMYVMDYGAPIGYRMALKHPERLQTLIVQNGNAYTEGLETFWDPIKAYWAEDTPQRREAIANLVTLEITKFQYTDGMSDVARISPDNWIVDQALLDRPGNREIQLDLFRDYGSNVPLYPDFQAFFRQYQPPTLIVWGKNDYIFPEPGAHPYLRDLPKAELHLLDTGHFALEDKLDEMVPLIRDFLGRNL
>NZ_CP046904.1|WP_145875874.1|2447977_2450836_-|ATPase
MTDDPGGRSFAFGSFVLIPQRQLLLQGELPVRIGSRALDILTALAERPGELVSKRELIARVWPSTVVDESNLKVNMAALRRALGDGGPDDARYIATVTGRGYKLIVPVTTGVSPNLAWAPAAGTTRRHNLPTGTTRVIGRADAIDGIRRDFDVARLVSIVGPGGIGKTTVALAVAEHAIGAFRDGAWLVDLALTKDPHQVPSAVAAALGIAGNAAGILATLCKSLRDRQILLVLDSCEQVIEACAACASRILAEAAGVKILVTSREPLQLSGERVRRLPGLGLPPSSEHLTAQEALMFPAVQLFVDRATDRMETFKLRDADATAVAEICRRLDGIALAIELAATRIDAFGVGGLHKQLDNRFRLLVGRRSGPERHRTLAATLDWSYSLLAEREAALLRSVSVFAGVFDIEGAAVVAAMDPAEAADMLAQLSAKSLLVADLDADGIAYRLQETTNSYCQDKLRAGGHEPVARQRHAEHTYVTLERAGSEWAQRPADEWESAYRRVLGDLRAALAWTVKEAPDGPLAIRLTVAGLLLWNQFSLTEECLRHVSHAVEELDAAGLAGTAFEMKLKLWLGCSTMLTREFRHQAMAALRRALAIAEGIGDTDYRLRCLVMIGIYELFTGEHEAGMRTLEEFEAVAGAEDPSVLPEGDVHMGIAELFLGRLPRSRERLERLARRDLRYFGSYAVRYLSDPIVLVRAVLTHVQWLTGSADAAMRTAAVAVDEARQTKHHLSMNNILSYACPVFYWSGAYDECERYVAMLEDHVARHGLVSRRPVASFYAAAVAYARHGSSPDVIFALQRAIGEFRNINHLARMPYYLSVLANALADRGRFAEAESTIRTALDIAAAQHELWCLPEVLRIQAAIAALQGRKTEAAGLLVNALEVATETGALAWRLRVAIDLATLSGDGEEGAAALGIVRAALDEFTEGFATRDLAAAAALVGAQVSAQASD
>NZ_CP046904.1|WP_145874961.1|2447405_2447981_+|cupin-domain-containing-protein
MSFPAIHRVVTGHDADGKAIVASDGPLPTVFELQALPGMFFHEVWETAGTPAPVDNGADPTTGPTMHGPPKHGTRIRFVDFPPDEAYLADAEQRMKAAFGEVNNSAALTTKDDSPHPMMHRTEAVDYGIVIAGELTLVLDDSDVPLRPGSVVIQRGTNHAWANRSGKPCRMLFIQVDGQYDPAIAAALAAR
>NZ_CP046904.1|WP_145874963.1|2446047_2447394_+|MFS-transporter
MNTKAASATAEDLPATGHATAAPRRSPLLWVPTGYFTMALAYVMLTSVTAIMFKNLGMDNGKAAEYASYLILAYTIKPLFAPLVEMYRTKKFFVLVAQVIVGVGFGCVALAMALPGYMAIMVALFILLSFVGATQDIASDGVYVTALDSRAQSLYCGIQSLSWNIGPIVASGGMVYLSGWLHTRVFHHDPKVFGPEWIESWRIIFFIVAGLTLVMAAWHLRTMPDGAKAENAPSSLSEAWFILKDSFITFFQKRDVWLMVGFAFLFRLSIGLLEKIGPFFMVDPVAKGGLGMSNEQLGLVYGTYGLAAVLLGSLLGGFFVARRGLKPTLFLLCCAVNIPNVTFLLMALYQPTSELVVTAGVAVEKFFYGFGSVGFMIYLMQQLAPGKYSTTHYAFGTGLMGLCMMVTGMVSGHLQEALGYVHYFWFVMAATVPSFLVTWFAPFHHKEA
>NZ_CP046904.1|WP_145874965.1|2444657_2445977_+|beta-glucosidase
MTDKLQFPPSFTWGVATSAFQIEGAANADGKGPSIWDTFSHTPGKVIDGSNGDVACDHYHRYAEDVGIMADLHVDAYRFSMAWARVQPAGKGAWNEAGFAFYGRLLDELDKKNIAAHITLYHWDLPQGLQDDGGWLNRDTAYHFAEYAAEVARRFGNRVKTIATHNEPWCTANLGYGNAQFAPGVADAKQSVQVSHHLLLSHGLAMKAMRAVGSQAQLGIVLNQWTADPATDSAADRALAQWEYARSVQWFMDPIFKGRYPEYALQGHGANAPDVKDGDFDIIRQPIDFLGVNYYFRSWCSAANPPVPAPAALGTTDMGWEIYPQGLTELLVKLKGEYDLPPIYITENGMANPDEVVDGHVPDTQRIDYVQRHLAALKDAMDAGVDVRGYFLWSLLDNFEWNSGYAKRFGIVHVDYATQQRTPKDSALWYREFIDTQRG
>NZ_CP046904.1|WP_145874947.1|2458890_2460447_+|tryptophan-7-halogenase
MAPIRNILIVGGGTAGWLAACFLAKMLGAKADGAVQITLVESPEIGIIGVGEGTFPSIRGTLSLIGIDEARFIRECNATFKQGVRFNHWVRPAGAPGPDHYFHPFSQPSQRPGGPELLPYWLMGAAGNVPFAAAATLQKHVADMSHGPKRVTDGDFLGPLNYAYHFDAGRFAALLCTHAQTLGVRRVEATVEDVTLDGEGAIDSVVTREAGVLRGDLYIDCTGFRARLIGEALGSPFRNISDTLFVDRALAMQVPYERPDAPIPSYTISTAHEAGWTWDIGLHERRGIGYVYSSRHTSDERADEVLRGYIGKASEGRTPRLLKLNVGYRETQWVKNCVAIGLSSGFLEPLESSGIGLIEAATYLVGFLFPHDGNLAPVAKTFNAQMKARYERIVDFIKLHYCLTQRRDNAFWIENADPATIPESLRDQLAMWRARPPHRLDFVTDLEMYPPSSWQYVLYGMEFATTLHANRAALPELDAAKREFQTIAQLCHHAVKDLPPHRALVDHYLRRGEGLRRA
>NZ_CP046904.1|WP_145874944.1|2460443_2461454_+|LacI-family-DNA-binding-transcriptional-regulator
MKERDHPATLVDVARAAGVSPSTVSRIMNGTARVADAKRQAVLAAIERMHFAPNQMARSLKKGCTMTVGIVVQDISSPFFDETLRGVDDALLGTGYTSVVVSGHWNADEEADRIRLLLARKVDGIILLTGRMSDDTVLQFARERPIVATGRQLRSPGAVGFKVDNEHGAFIATRHLIDAGHRRIAFITGPAASSDANERLAGYRRALRSAGIDADHELIVEGDFHEHSGQRAIEHLLAHGIAFSAVFAANDLSAYGARLALYRHGVRVPEDVSLVGFDDLPGSMYTAPPLTTVRQPLYDLGRAATKALLSLLGRARPDDVVPPVELVVRETTRCVN
>NZ_CP046904.1|WP_145874941.1|2461457_2461766_-|DUF1272-domain-containing-protein
MLELRPSCEHCAKPLPPHAADARICSYECTFCAACAEQLLQDVCPNCGGGFVPRPIRPARDWKNGNYLGNDPARTEPKYRPVDLAAHAGLVARLRNVPPQER
>NZ_CP046904.1|WP_145874939.1|2461847_2462852_+|helix-turn-helix-domain-containing-protein
MRATSPVPRQPPVDVWLLVFPDFLLLDATGPIQVFASANDEARDAGLPPPYRIHVIAAGGGAVASSAGVALVAEPLPRRRIGTGTLIVAGGSGAGLPSASTPAGNALLRWVARVGAAATRCCSVCTGAFVLARAGLLDGRRAVTHWQDVAALRAEHPAVRVQDDALHVKDGKFHTSAGISAGMDLALSLVEEDLGRACALAVAKRMVLFLKRPGGQRQFSSELLAQAQAEGVYGQLVAWLRPRLAQRIDVEQMAAACALSVRTLHRRLRDEAAVTPAQLLAQLRLELACDLLERPNTSVKQAARKCGYGSEYNLRRAFVARLGVLPSEYRARFG
>NZ_CP046904.1|WP_145874936.1|2463228_2465070_-|dihydrolipoyl-dehydrogenase
MSIVEVKVPNIGDFKEVEVIEVMVKAGDTIKVDQSLATVESDKASMEIPSTHSGVVKELKIKVGDKVSEGSLLLLVEEAAGAASSAPAGAPAAPVAQPAEKGAAPGQAAPVYGGPAVAAPAAAAPSSGPAPAAGSYSGNVDIDCDMMVLGGGPGGYSAAFRAADLGMNTVIVERYATLGGVCLNVGCIPSKALLHLASVIDETAHLGKHGVKFAKPEIDIDEVRKYKEGVIGKMTGGLAGMAKARKTQVVQGVGQFVSPHHIEVTAADGTKKVVQFKQAIIAAGSSVVKLPFIPEDPRIVDSTGALELRFVPKRMLVIGGGIIGLEMATVYSTFGARIDVVEMMDGLMQGADRDAVKIWQKYNAHRFDNVMTKTKTVGVEALPEGIKVTFEAAEAGATAPAPQVYDMVLVAVGRSPNGKKIAADKAGVQVTDRGFINVDSQMRTNVPHIFAIGDLVGQPMLAHKAVHEGHVAAEAAAGQKSHFDATVIPSVAYTDPEVAWVGLTEDEAKAKGIKVEKGHFPWAASGRAVANGRDEGFTKVLFDAETHRIVGGTIVGTHAGDMIGEIALAIEMGADGTDIGQTIHPHPTLGESIGMAAEVYEGVCTDLPPMRKR
>NZ_CP046904.1|WP_145874933.1|2465082_2466741_-|dihydrolipoyllysine-residue-acetyltransferase
MSIVEVKVPAIGDFKEVEVIELMVKVGDTIKVDQSLITVESDKASMEIPSSAAGVVKEIKVKVGDKVAEGSLLLMVEADGAAAAPAAAPAAAAPAAAPAPAPAAPAPAPAAAPAASGGPVEVKVPDIGDFKEVEVIELMVKPGDTIRKDQSLITVESDKASMEIPSSVDGVVKELKVKVGDKVAEGSIVLIAESSGGAAAPAPAAPAAAPAPAAASAPAPAPAPAAAPAPAAAPATTGVTGKLAHASPSVRKFARELGVDVSKVPGTGQKGRITQQDVQNYVKGVMAGTTAAPAGSAAPAGGGAGLNLLPWPSLDFSKFGETELQPLPRIKKISGPNLHRNWVMIPHVTQFEDADITELEAFRVETNNANAKNKDAAKLTMLAFVIKASVAALKKYPAFNSSLDEKGENLILKKFYNIGFAADTPNGLVVPVVKNADQKSVTQIAKEMTELSLAAREGKLKPTDMQGATFTISSLGGIGGSHFTPIVNAPEVAILGLSKASMKPVWNGKEFAPRLMMTLSLSYDHRVIDGASGARFAVYLAEVLGDMRKILL
>NZ_CP046904.1|WP_145874932.1|2466762_2469459_-|pyruvate-dehydrogenase-(acetyl-transferring),-homodimeric-type
MSANIDQVTAQTANDPDAQETKEWLEALEAVLENEGPERAHYLMERLVDLARRRGAQIPFSATTAYVNTIPAHVGAHCPGNLEYEERLRSWMRWNAMAMVVKANRADGDLGGHLSSFASLANMLGIGFNHFWRAPSEEHGGDLLYIQGHSSPGIYARAFLEGRLTEEHLLNFRREVDGKGLSSYPHPKLMPDFWQFPTVSMGLGPLMAIYQARFLKYLHARGIANTDGRKVWAFCGDGEMDEPESMGAIGMAAREMLDNLVIVVNCNLQRLDGPVRGNGKIIQELEGEFRGAGWNVVKVIWGPGWDELLAKDKEGILQRVMMETVDGEYQNYKAKDGAYVRKHFFGKHPKLLEMVANMSDDDIWRLTRGGHDPHKIYAAFKVAQEAKGRPTVLLVKTVKGFGMGKSGEARNTAHQTKKLDDEAIREMRDRFNIPIPDDKLAEIPFFKPSDDAPEIKYLHERRKALGGYLPHRRQKADETLVVPPLEAFKAVLEPTPEGREISTTQAYVRIITALLRDQSLGQRVVPILVDESRTFGMEGLFRQIGIFNQQGQLYEPVDKDQVMYYREDKAGQILQEGINEAGGMSSWIAAATSYSTNNRVMLPFFTYYSMFGMQRVGDLAWAAGDMRARGFLMGGTAGRTTLNGEGLQHEDGHSHLFAAAIPNCLPYDPTFGHELAVIIHDGLRRMVTEQEDVFYYITIMNENYAHPGLKAGQEEGILKGMYLLQQGTANAGQRVQLVGSGTILRESIFAAELLEKDWGVAADIWSAPSLTLVARDGQDAERWNLVNPTKEQRVPYVTQLLKDTQGPIIATTDYMRMFAEQIRPYIPEGRHYRVLGTDGFGRSDSRAKLREFFEVNRYYITVAALRSLADEGKIDLAVVEQAVAKYGLNPNKPNPVTQ
>NZ_CP046904.1|WP_145874929.1|2469526_2469799_-|hypothetical-protein
MVLDAAMRRMRVATSKVHPNGEGLGSDPAGLTPGCAVGVKKAASGPQTQYLCGAAPFRHGEISHYKILFRILKKPKFTVRILTLRKSLDK
>NZ_CP046904.1|WP_145874927.1|2469839_2470685_+|bifunctional-methylenetetrahydrofolate-dehydrogenase/methenyltetrahydrofolate-cyclohydrolase-FolD
MSAQLIDGIALSQKLRAEIATRAAALTAAGKQPGLAVILVGEDPASQVYVRNKVKACGDVGIRSVMEKYDADLTEQALLDRIAALNDDPTIHGILVQMPLPKHINPHKVIEAISTSKDVDGYSVLSAGELMTGLEGFRPCTPYGCMKLIESTGFDLRGKHAVVIGRSNTVGKPMALLLLQANATVTICHSATPDLAVYTKQADVIVAAVGRRNTLTADMVKPGAIVIDVGMNRDDNGKLCGDVDFAAIKDVAAHITPVPGGVGPMTITMLLMNTIESAERG
>NZ_CP046904.1|WP_145874925.1|2470707_2472801_+|M3-family-metallopeptidase
MTTTDNPLLDFTGLPRFDAIRPEHVTPAIDELLAKNRAVVAQLEAPVDQVTWRNFVTPLENATELLGRAWGIVSHLNNVADTPELRAVYNENLPKVTEFWTELAQNEALFAKYKALRASSEFATLSPAKQRIAENAIRDFRMGGAELPPAQKERFAAIQEEHAAVSTRFSENVLDATNDWKLLVESEAELAGLPDDVQAAAKAAAERDGKQGWLFTLHFPSYYPILQFADNRALREKVYRANATKASELGDVFSERDKWDNGANIVTLLKLRAEEAQLLGYKNFAEVSLVPKMAQSPEQVIGFLEDLAKRARPYAEKDLEELKSFAAEHLGLTDLQAWDLPYASEKLQQHRYAFSAQEVKQYFPEHKVVDGLFKLVQDLFGVRIVADEAPVWHKDVRFFRIERDGALVGQFYLDLYARAGKNSGAWMDDARSRRVEGGQLQTPVAYLTCNFTEPAVIDGKVQPSLFTHDEVITLFHEFGHGLHHMLTTVEELGVSGIAGVEWDAVELPSQFMENFCWEWDVLSHMTAHVQTGEPLPRALYDKMLAAKNFQSGLQTLRQVEFALLDMHLHYDYDPGSEQNAGKSVQDVIDDVRRKFAVIVPPSFNRFQNSFGHIFAGGYAAGYYSYKWAEVLSADAYAAFEEAAELELPDQKVVETGRKFLQEILSVGGSRPALESFTAFRGREPQIDALLRHSGMAA

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Crispr_ID: NZ_CP046904_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP046904_5

2740128-2740222

Orphan

Consensus_repeat	Method
CCGTGTCCTGTCGGGGTCTGACCCCAGCGGGACAC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP046904_5

>merge|NZ_CP046904|5|2740128-2740222|CRISPRCasFinder
CCGTGTCCTGTCGGGGTCTGACCCCAGCGGGACACAAGCTCAGCGGTGATACGGCCCAGGCCGTGTCCTGTCGGGGTCTGACCCCAGCGGGACAC

>NZ_CP046904|5|4|2740128-2740222|CRISPRCasFinder
CCGTGTCCTGTCGGGGTCTGACCCCAGCGGGACAC	AAGCTCAGCGGTGATACGGCCCAGG
CCGTGTCCTGTCGGGGTCTGACCCCAGCGGGACAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP046904.1\|WP_145874266.1\|2729604_2730162_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP046904.1\|WP_145874282.1\|2747714_2748731_-\|diguanylate-cyclase	unknown	unknown	gnl\|CDD\|143635
NZ_CP046904.1\|WP_145874267.1\|2730170_2730674_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|224423
NZ_CP046904.1\|WP_145874279.1\|2744365_2745265_-\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|176160
NZ_CP046904.1\|WP_145874268.1\|2730712_2732107_-\|RNA-dependent-DNA-polymerase	RT	pfam00078_RT_CAS-I:CAS-III	gnl\|CDD\|238824
NZ_CP046904.1\|WP_145874280.1\|2745270_2746161_-\|ion-transporter	unknown	unknown	gnl\|CDD\|366146
NZ_CP046904.1\|WP_005665410.1\|2738500_2738713_-\|30S-ribosomal-protein-S21	unknown	unknown	gnl\|CDD\|234707
NZ_CP046904.1\|WP_145874825.1\|2747412_2747703_-\|DUF427-domain-containing-protein	unknown	unknown	gnl\|CDD\|377265
NZ_CP046904.1\|WP_145874275.1\|2741289_2742348_+\|3-deoxy-7-phosphoheptulonate-synthase	unknown	unknown	gnl\|CDD\|237190
NZ_CP046904.1\|WP_145874271.1\|2735981_2737778_-\|DNA-primase	unknown	unknown	gnl\|CDD\|235551
NZ_CP046904.1\|WP_145874270.1\|2733267_2735526_-\|RNA-polymerase-sigma-factor-RpoD	unknown	unknown	gnl\|CDD\|235549
NZ_CP046904.1\|WP_145874273.1\|2738850_2740059_-\|aminoacetone-oxidase-family-FAD-binding-enzyme	unknown	unknown	gnl\|CDD\|367519
NZ_CP046904.1\|WP_145874272.1\|2737868_2738318_-\|GatB/YqeY-domain-containing-protein	unknown	unknown	gnl\|CDD\|370480
NZ_CP046904.1\|WP_145874277.1\|2743066_2744098_+\|tRNA-(adenosine(37)-N6)-threonylcarbamoyltransferase-complex-transferase-subunit-TsaD	unknown	unknown	gnl\|CDD\|236585
NZ_CP046904.1\|WP_158206729.1\|2732103_2732700_-\|SLATT-domain-containing-protein	unknown	unknown	gnl\|CDD\|375597
NZ_CP046904.1\|WP_145874265.1\|2727044_2729435_-\|TonB-dependent-receptor	unknown	unknown	gnl\|CDD\|238657
NZ_CP046904.1\|WP_145874276.1\|2742360_2742771_-\|Rieske-2Fe-2S-domain-containing-protein	unknown	unknown	gnl\|CDD\|239606
NZ_CP046904.1\|WP_145874274.1\|2740237_2741206_-\|DNA-binding-protein-YbiB	unknown	unknown	gnl\|CDD\|236160
NZ_CP046904.1\|WP_145874278.1\|2744098_2744278_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP046904.1\|WP_145874281.1\|2746167_2747394_-\|metal-dependent-hydrolase	unknown	unknown	gnl\|CDD\|377294

Protein	Function_ID	Function_description	E-value
NZ_CP046904.1\|WP_145874280.1\|2745270_2746161_-\|ion-transporter	gnl\|CDD\|366146	pfam00520, Ion_trans, Ion transport protein. This family contains sodium, potassium and calcium ion channels. This family is 6 transmembrane helices in which the last two helices flank a loop which determines ion selectivity. In some sub-families (e.g. Na channels) the domain is repeated four times, whereas in others (e.g. K channels) the protein forms as a tetramer in the membrane.	4.98169e-33
NZ_CP046904.1\|WP_145874282.1\|2747714_2748731_-\|diguanylate-cyclase	gnl\|CDD\|143635	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain. Diguanylate-cyclase (DGC) or GGDEF domain: Originally named after a conserved residue pattern, and initially described as a domain of unknown function 1 (DUF1). This domain is widely present in bacteria, linked to a wide range of non-homologous domains in a variety of cell signaling proteins. The domain shows homology to the adenylyl cyclase catalytic domain. This correlates with the functional information available on two GGDEF-containing proteins, namely diguanylate cyclase and phosphodiesterase A of Acetobacter xylinum, both of which regulate the turnover of cyclic diguanosine monophosphate. Together with the EAL domain, GGDEF might be involved in regulating cell surface adhesion in bacteria.	3.55692e-30
NZ_CP046904.1\|WP_145874267.1\|2730170_2730674_-\|hypothetical-protein	gnl\|CDD\|224423	COG1506, DAP2, Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism].	7.86646e-05
NZ_CP046904.1\|WP_145874279.1\|2744365_2745265_-\|LysR-family-transcriptional-regulator	gnl\|CDD\|176160	cd08471, PBP2_CrgA_like_2, The C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator CrgA-like, contains the type 2 periplasmic binding fold. This CD represents the substrate binding domain of an uncharacterized LysR-type transcriptional regulator (LTTR) CrgA-like 2. The LTTRs are acting as both auto-repressors and activators of target promoters, controlling operons involved in a wide variety of cellular processes such as amino acid biosynthesis, CO2 fixation, antibiotic resistance, degradation of aromatic compounds, nodule formation of nitrogen-fixing bacteria, and synthesis of virulence factors, to name a few. In contrast to the tetrameric form of other LTTRs, CrgA from Neisseria meningitides assembles into an octameric ring, which can bind up to four 63-bp DNA oligonucleotides. Phylogenetic cluster analysis showed that the CrgA-like regulators form a subclass of the LTTRs that function as octamers. The CrgA is an auto-repressor of its own gene and activates the expression of the mdaB gene which coding for an NADPH-quinone reductase and that its action is increased by MBL (alpha-methylene-gamma-butyrolactone), an inducer of NADPH-quinone oxidoreductase. The structural topology of this substrate-binding domain is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	1.6104e-93
NZ_CP046904.1\|WP_145874268.1\|2730712_2732107_-\|RNA-dependent-DNA-polymerase	gnl\|CDD\|238824	cd01646, RT_Bac_retron_I, RT_Bac_retron_I: Reverse transcriptases (RTs) in bacterial retrotransposons or retrons. The polymerase reaction of this enzyme leads to the production of a unique RNA-DNA complex called msDNA (multicopy single-stranded (ss)DNA) in which a small ssDNA branches out from a small ssRNA molecule via a 2'-5'phosphodiester linkage. Bacterial retron RTs produce cDNA corresponding to only a small portion of the retron genome.	5.87101e-25
NZ_CP046904.1\|WP_005665410.1\|2738500_2738713_-\|30S-ribosomal-protein-S21	gnl\|CDD\|234707	PRK00270, rpsU, 30S ribosomal protein S21; Reviewed.	2.46327e-16
NZ_CP046904.1\|WP_145874825.1\|2747412_2747703_-\|DUF427-domain-containing-protein	gnl\|CDD\|377265	pfam04248, NTP_transf_9, Domain of unknown function (DUF427). This domain contains a beta-tent fold.	4.16922e-37
NZ_CP046904.1\|WP_145874275.1\|2741289_2742348_+\|3-deoxy-7-phosphoheptulonate-synthase	gnl\|CDD\|237190	PRK12755, PRK12755, phospho-2-dehydro-3-deoxyheptonate aldolase; Provisional.	0
NZ_CP046904.1\|WP_145874271.1\|2735981_2737778_-\|DNA-primase	gnl\|CDD\|235551	PRK05667, dnaG, DNA primase; Validated.	0
NZ_CP046904.1\|WP_145874270.1\|2733267_2735526_-\|RNA-polymerase-sigma-factor-RpoD	gnl\|CDD\|235549	PRK05658, PRK05658, RNA polymerase sigma factor RpoD; Validated.	0
NZ_CP046904.1\|WP_145874273.1\|2738850_2740059_-\|aminoacetone-oxidase-family-FAD-binding-enzyme	gnl\|CDD\|367519	pfam03486, HI0933_like, HI0933-like protein.	1.44513e-179
NZ_CP046904.1\|WP_145874272.1\|2737868_2738318_-\|GatB/YqeY-domain-containing-protein	gnl\|CDD\|370480	pfam09424, YqeY, Yqey-like protein. The function of this domain found in the YqeY protein is uncertain.	2.90504e-57
NZ_CP046904.1\|WP_145874277.1\|2743066_2744098_+\|tRNA-(adenosine(37)-N6)-threonylcarbamoyltransferase-complex-transferase-subunit-TsaD	gnl\|CDD\|236585	PRK09604, PRK09604, tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD.	0
NZ_CP046904.1\|WP_158206729.1\|2732103_2732700_-\|SLATT-domain-containing-protein	gnl\|CDD\|375597	pfam18160, SLATT_5, SMODS and SLOG-associating 2TM effector domain family 5. The SLATT domain contains two transmembrane helices. SLATT domains are generally predicted to function as pore-forming effectors in a class of conflict systems which are reliant on the production of second messenger nucleotide or nucleotide derivatives. SLATT domains are predicted to initiate cell suicide responses upon their activation. This SLATT family contains an additional C-terminal alpha-helix, and strictly associates with a reverse transcriptase domain, part of a predicted retroelement with diversity-generating potential.	2.72291e-28
NZ_CP046904.1\|WP_145874265.1\|2727044_2729435_-\|TonB-dependent-receptor	gnl\|CDD\|238657	cd01347, ligand_gated_channel, TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) anti-parallel beta-barrel. Ligands apparently bind to the large extracellular loops. The N-terminal 150-200 residues form a plug from the periplasmic end of barrel. Energy (proton-motive force) and TonB-dependent conformational alteration of channel (parts of plug, and loops 7 and 8) allow passage of ligand. FepA residues 12-18 form the TonB box, which mediates the interaction with the TonB-containing inner membrane complex. TonB preferentially interacts with ligand-bound receptors. Transport thru the channel may resemble passage thru an air lock. In this model, ligand binding leads to closure of the extracellular end of pore, then a TonB-mediated signal facillitates opening of the interior side of pore, deforming the N-terminal plug and allowing passage of the ligand to the periplasm. Such a mechanism would prevent the free diffusion of small molecules thru the pore.	3.24162e-67
NZ_CP046904.1\|WP_145874276.1\|2742360_2742771_-\|Rieske-2Fe-2S-domain-containing-protein	gnl\|CDD\|239606	cd03530, Rieske_NirD_small_Bacillus, Small subunit of nitrite reductase (NirD) family, Rieske domain; composed of proteins similar to the Bacillus subtilis small subunit of assimilatory nitrite reductase containing a Rieske domain. The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer. Assimilatory nitrate and nitrite reductases convert nitrate through nitrite to ammonium.	6.20617e-42
NZ_CP046904.1\|WP_145874274.1\|2740237_2741206_-\|DNA-binding-protein-YbiB	gnl\|CDD\|236160	PRK08136, PRK08136, glycosyl transferase family protein; Provisional.	1.87062e-163
NZ_CP046904.1\|WP_145874281.1\|2746167_2747394_-\|metal-dependent-hydrolase	gnl\|CDD\|377294	pfam04307, YdjM, LexA-binding, inner membrane-associated putative hydrolase. YdjM is a family of putative LexA-binding proteins. Members are predicted to be membrane-bound metal-dependent hydrolases that may be acting as phospholipases. It is a member of the SOS network, that rescues cells from UV and other DNA-damage. Expression of YdjM is regulated by LexA.	7.7593e-16

>NZ_CP046904.1|WP_145874273.1|2738850_2740059_-|aminoacetone-oxidase-family-FAD-binding-enzyme
MAEQFDVVVIGAGAAGMMCAATAGQRGRKVVLVDHAEKLAEKIRISGGGRCNFTNVNAGPANFLSDNPHFAKSALSRYTPQDFLALVKKYRIAYHEKHKGQLFCDDSAEQIIDMLRAECDLGNVHWRMPAKVDGIARDGEQFAVHTHAGTIHAQSVVVATGGLSIPKIGATDLGYRIAKQFGLGLVEPRPALVPLTFDAQQWQPFVPLAGVSLEVDVETGTLKGRNATGARFREDLLFTHRGLSGPAILQISSFWQPGTPITINLLPELDVAQQLIEGKGTVKKHLGNVLAQWLPARLADGLLQAHAFHADARLADMPDAQLRRLGQAINAWTITPNGSEGYRKAEVTRGGVDTRELSQQTLMANKVPGLHFIGETVDVTGWLGGYNFQWAWASGVAAGLAV
>NZ_CP046904.1|WP_005665410.1|2738500_2738713_-|30S-ribosomal-protein-S21
MTTIRLKENEPFEVAMRRFKRTIEKTGLLTELRAREFYEKPTAERKRKLAAAVKRHYKRIRSQQLPKKLY
>NZ_CP046904.1|WP_145874272.1|2737868_2738318_-|GatB/YqeY-domain-containing-protein
MSLKAQISDDMKNAMRAKEAGKLATIRLLLAEIKRREVDEQIELNDDQVIAVVEKMIKQRKDSITQFEAGGRADLADIEKAELAVLSAYMPAGLSDDEVAAEVKAAVAESSAAGPQDMGKVMAILKPKLAGRADMTAVSGLVKKALSGA
>NZ_CP046904.1|WP_145874271.1|2735981_2737778_-|DNA-primase
MIPQSFISDLLNRVDIVDVVGRYVQLKKGGANFQGLCPFHNEKSPSFTVSPTKQFYHCFGCGAHGTAIGFLIEYSGMGFVDAVKDLAQGVGMVVPEQDDKIPPAQRAQMQAQSVALSDAMTLAADYYKGQLRKAPSAIAYLKGRGLTGEIAARFALGYAPEGWDNLRAVFPKYDAPVLAEAGLVIDKVDEEGRHIKRYDRFRERVMFPIRNTKGQVIAFGGRIMEQGEPKYLNSPETPLFSKGSELYGLFEARQAIRDAGYVLVTEGYMDVVALAQMGFPQAVATLGTACTTTHVQKLLRQTDNVVFSFDGDRAGRKAARRALEACLPHVSDDKTIKFLFLPAEHDPDSYIREFGAPAFEQQVQEAMPLSQFLLREAAGEHDLDSPEGRARVQFDAKPMLQAMTPTALRLQIVRGLANMTQSSPAEIEALFELAKPVAANRKAPPKSKRQEPVGLELKIIRAIVSHPSLALQLDESAQQAFAQFGPEQCEHLVHLVRLAQELGDNGTFAALAQQLKEQGPEYDAIIGEIAAAPEPEIETERMWLTATVRQLKLDMLKAELNQLFSAGLSSEELGVRYREITAKQDMLMREEQLELSNR
>NZ_CP046904.1|WP_145874270.1|2733267_2735526_-|RNA-polymerase-sigma-factor-RpoD
MPAKKPETKAAAKPSKVTARAAKTADKAETSAETRAPAAPPAVSQTTDAATLAAIDTSGYVLPSVKVPGRRGRKPKEFQPENDEVAALNAVERAELKAVDKAKAKDRKAKEKALLKDAFSSDTEATEEELERRRQKLKTLIKFGKERGFLTYAEINDHLPDNIVDPEAIEGIIGTFNDMGIAVYEHAPDAETLLLSDNVATVTSDDEAEAAAEAALSTVDSDFGRTTDPVRMYMREMGSVELLTREGEIEIAKRIEDGLKDMIQAISACPVTIAEIIATSDRIRHDEIKIDEIVDGLVDENEDGGGPAAQTAPSEDDEDDEDEEEEEEEEEEEASPSGAAAGYSAEQLEAMKNAALAKFDEIANQFDKMRKAYEKEGYNSKSYVKAQDAISNELLGIRFTAKVVEKLCDTLRGQVDEVRHIEKQILDVAVNKCGMPRAHFIKVFPGNETNLEWVDGEVAAGHAYSAILGRNIPTIKELQQRLIDLQARVVLPLPDLRNINRQMAAGEMKARKAKREMTEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKMNRISRQILQETGAEPDPATLAIKMEMPEDKIRKIMKIAKEPISMETPIGDDDDSHLGDFIEDNNTLAPSDAALHASMRGVVKDVLDSLTPREAKVLRMRFGIEMSTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSDKLKSFLEGN
>NZ_CP046904.1|WP_158206729.1|2732103_2732700_-|SLATT-domain-containing-protein
MTIPEHLFNKVWFTRKAWINAEERLLLNEHHTQLLMVVYAAYTTCVSVVMLKFPPALKADEDLANTAMAVLSIILLALSLYLNSKTFKDRAARFKQGYHELQEIENELVALKSDPATNVAGPACTELAARYAKALREVENHNTLDDIRARILAGSGLTSRHPRRGEVVRYYWWRIWRFCTLALLYVAPVGAALWFHLK
>NZ_CP046904.1|WP_145874268.1|2730712_2732107_-|RNA-dependent-DNA-polymerase
MSAAKHFAQQFTVENLRSVYEDYIALTSAIGVDRLSRNLFEQTVLREIELINKKAADGSYKFSQYKEKLISKGANKYPRVISIPTYRDRITLRALCNVLKSTFKEDLDVKLPQHTVSELRKALASGEYTHFIKLDVTNFYPSIDHDVLTKILKRKIRKAEIHHLIRVAIESPTVAYPDRSKAKETKGVPQGLSISNILAEIYLSKFDAWASKMEHVKYFRYVDDVLILTNGDPEALFDAVSTYLLNGYHLNVHPLHTVGKSMVGKVTDHFNFLGYDFKNTLASVKLDSVRRLESSLAKIFTTYKYRRATATANPDPVARKLLLERARKIFTWRLNLRITGCLFDEVRRGWVFYFSQIDDKAVSQLHGLDKTINVLCKRFAFEPIKGELKSFVRSFHEAKRSNLTHKYIPNFDTSSIDEQRALLELYGMDNVGSLTEVQVNRAFKRRIRRETSELEQDIEGGSRG
>NZ_CP046904.1|WP_145874267.1|2730170_2730674_-|hypothetical-protein
MLQRSAAVPARLFRSPAAEPAGAILRKQLTGKLPPGQAAENERVLVAMEEGRTVEQVSQALHVLYRPSVQPYLISWMKHVPAKVVAAMRMPVLIVQGGTDIQVGMDQAQALKAAKPDATLAIIPDMNHVLKQVPIDPAVQARSYGDPTLPLHPALIGHIKAFLDKRK
>NZ_CP046904.1|WP_145874266.1|2729604_2730162_+|hypothetical-protein
MTRFVPHFLAAACAMAAATTASAQSSVADLVGEYTLASSTTVPASSWGFTKSRVSIRKLDERHVLILLACEWKREPKAVCREHYFAQQRDGGVYMQDMNTDSQRWYFDPATRRLTVIWRGADAKSSVRHDVYAPTQEPLTDPALVRRMKREETLWNDKENLRVFGHYSKWTYQNNRIEFQSGTPK
>NZ_CP046904.1|WP_145874265.1|2727044_2729435_-|TonB-dependent-receptor
MTFKRRKIAGATLCALTCLATERGAAAAESPNSADVDSGQSVIVTGTRASNRTQFDTLAPVDVFSREEIAAVESSDLNDVLAQLVPSYVVQRLPMADGQVFVRPATLRGLSPDQTLVLVNGRRFHRSALLGARGAQAADLAQIPTSAIKRIEVLRDGASAQYGSDAIAGVINIILDDAVGAEISAHHSQYSEADGKTNELRAKYGLAFGTDGKLNLFAEAMQSDPTSRTRQRADAIAFQAAHPQLTVPNPVQRWGQPELDSQHLGYNASVGLGGDTVAYSYALFTHSKGTSDFNWRNPDTSTSVFKTTTVFPGWDVRSIYPVGFSPQYTNKSNDAHVLAGVRGNLSDALAWDVSASYGRNAIDYGLHNSINASLGPNSPTSFYLGRLTQDEKLVNANFNYAWNVPALAQPVNVGFGAEYRNERYAVRAGDPASYAVGPGAAMGLDANANGAPGFSNTQAGRWDQNSYAAYADVEAPLTSRFTVGAALRYEDYSEFGDTWNGKLSARFALSPDVGLRASYSTGFRAPTPGQLNTNSTSQGLDTRTLLVFSSGRLSNSDPLAVMLGAQPLQPEKSKNLSLGLTWKSALGLSGSVDLYDIKVRDRFSTSASFAVPAGVANPLRYTSVNYFTNDFDTSTRGIDVVGSWRGRVADGTMNLTAAYNYNKTEVDGGSSAVATNTTQRLIFEERLPRQKATFSAAYDRRVWSALARLRYYGSWTDSTGNATGDIFQRFGAMRFLDLAASWRVTPTQTLRFGVDNVLDKYPDEAVFQASRGLIYSRNAPYDTDGRNLYVDYTVKF
>NZ_CP046904.1|WP_145874274.1|2740237_2741206_-|DNA-binding-protein-YbiB
MSIENVSFPAAAFIKEIGRGVKGARSISRDDAFRLYEAMLDGRVSDLEVGAIVLAMRIKGESVDELAGFLDAAERSFTPLQAPGGPFAPVLIPTYNGARKMANLTALLALLLAREGVPVLVHGVPHDPGRVATAEVLAELGITAAGSHEEAERALAAGHVAFITIDTLAPKLAHLLSLRRILGVRNSTHTLVKIMQPFAGPALRLVSYTHPEYLETLGEYFTTAAPRERGDAFLMRGTEGETVANAMKAQKIDWFHDGERTVLVERQMIAEAEPVLPEDKSAAATAAWIQSVLRGDTPIPDPIAQQVAQCITVARDLRSRHG
>NZ_CP046904.1|WP_145874275.1|2741289_2742348_+|3-deoxy-7-phosphoheptulonate-synthase
MIALDLENINVTSFASMPTPAELHAKLPLTEKASDTVTKGREDLRNILDRKDKRLFVVVGPCSIHDPVAGLDYARRLKALQEEVKDTMLLVMRVYFEKPRTTTGWKGYINDPFMDDSFRVDIGMERARQFLLDVCELGLPTATEALDPISPQYLGDLIAWTAIGARTTESQTHREMSSGLSTPVGFKNGTDGDIGIAINAILSAANPHAFLGINSEGNVSIVRTRGNAYGHVVLRGGDGRPNYDSVSVTIAEQALAKAKLPANIVVDCSHANSYKKPELQPLVMTDVINQIVHGNQSLVGVMIESNILAGNQKIPADLSELKYGCSVTDACIDWDTTVTMLKQADAELRRRP
>NZ_CP046904.1|WP_145874276.1|2742360_2742771_-|Rieske-2Fe-2S-domain-containing-protein
MPEQWKLICKVKDIPPGGARHVPRGLAWQELPGVAVFRTLEDRIFALLDSCPHQGGPLSQGAVLGEHVQCPRHQWNIALETGCAVAPEQGCTRRYTVKVEDGKVYLDLLELNAPASRAEAALAGTYGVAPLVRAYL
>NZ_CP046904.1|WP_145874277.1|2743066_2744098_+|tRNA-(adenosine(37)-N6)-threonylcarbamoyltransferase-complex-transferase-subunit-TsaD
MIVLGVESSCDETGLALYDTGRGLLAHALHSQVAMHEEYGGVVPELASRDHIRRAIPLLQETLKRADVAPADIDAIAYTQGPGLAGALLVGSSIACSLGLALDKPVLGVHHLEGHLLSPLLASDPPEFPFVALLVSGGHTQLMRVDGVGQYELLGETLDDAAGEAFDKSAKLLGLGYPGGPAISRLAEFGDPAAYKLPRPMLHSKDLNFSFSGLKTAVLTVVKNQGAANVCEQDKANIARGFVDAIVDVLVAKCVAALKQTGLKRLVIAGGVGANSQLRAALNAAAEKKRFRVYYPELEFCTDNGAMIAFAGAMRLSINPQAARRDYAFNVRPRWPLDELKIV
>NZ_CP046904.1|WP_145874278.1|2744098_2744278_-|hypothetical-protein
MNERATTHPPQQAASQAPAGKKLRSERVADLQKKHVKAGAVAAGGLLALVGLAAVLLGS
>NZ_CP046904.1|WP_145874279.1|2744365_2745265_-|LysR-family-transcriptional-regulator
MDRLHLMTVFVAVAEEAGFAAGARRLGMSPAAVTRAVAALEERLGVRLLERSTRLVRATEAGQRYLDDARRILQQLDEADEAAAGLNAAPRGRLAVTAPVLFGRMYVMPGIVDYLRRYPGTEVNAMFVDRVVNLLEEGQDVAVRIGELADSSLRALPVGRVRRIICAAPSYIAEHGAPAHPSQLDAHTIIASTSASIAPEWRFRHDDAVHAYRVRPRLAVTTMDAAIDAARRGLGLVRLLSYQAAPWLASGELAVVLGGYELPHVPIHIVHRDGRHGSARIHAFIDLLAERLRGDPALA
>NZ_CP046904.1|WP_145874280.1|2745270_2746161_-|ion-transporter
MNDRPVKAPAPPERSADPQQRYGKPDGGWRASLYEIIFESDTRKGQVFDLVLIGAILLSVVVVVLTSIAPFARDHGDWLMAGEWVFTVLFTIEYIGRLLCVKRPDRYARSFFGIIDLLSVLPSYVSLFIPGSHVLLDVRILRLLRIFRILKLTLYIQEYSMLGEALLASRRKILVFVSFVCLVVFLLGTVMYVVEGPGNGFTSIPTSVYWAISAMTTVGFGDLVPKTDLGRAIASVMMLLGWGILAVPTGIISSEITHQRGRTLTGRVCTRCGATGHEAGARFCNSCGEVLPAAQG
>NZ_CP046904.1|WP_145874281.1|2746167_2747394_-|metal-dependent-hydrolase
MDNLTHTFVGLGVGELVQRSLAPEPDDACQRTRHRLLLTACAAASNFPDLDLFLTHLLPAPLGYLLHHRGHTHTLLYTLPQALLLLAMLWLLWPNARQLLRTSRTARLGLGLAIGLGFLLHLSMDFLNSYGIHPLYPFDPRWFYGDLVFIVEPVFWVAFGVPLALAIPRRALRLLALAVLGLFLLGATLRSYLDWFSFGGLLVIGAAIAALRITRMQSRRALALAALVCVGFIAVQGGTSSLGRARVEAALRGIDPSARVLDVAMTGFPAQPLCWSFVAIEENAVQGTYRVRRGELNLAPGLLPACPAAFSEPQAAGTAVPGVALASSWQGSIGTLRTLARSDCHVNAWLRFARMPAVDADVASDLRYSATPRGNFTAMDVPAQRSAPCEGVPRWGYPRADLLGPAVQ
>NZ_CP046904.1|WP_145874825.1|2747412_2747703_-|DUF427-domain-containing-protein
MPKAIWNGAVIAEAPDNEVEIVEQNVYFPPERVKREYLQDSSHTTLCPWKGVASYYDVVVDGQTNRNAAWYYPTPKDAAKAIAGRIAFWHGVEVSR
>NZ_CP046904.1|WP_145874282.1|2747714_2748731_-|diguanylate-cyclase
MAAAAMTFPTFPQPDREQDRLAALRRLAGNDLPAGDDFTFLTSLAATLCGTPYAALTLVDAERVHVIARAGLDIASLPRSQCYSALAVLDAGITEIPDLARDARTATMALTTGAPGMRRYAAAPLLTDDGLAIGTLAVLDTQPGTLSAPQRAQLAGLARQAMALLAARADAAALRAARQELEQVAIRDELTGLLNRRALLHRLQFEAARARRFRTPLSAVLLDIDGIDAVGAEFGHPAGERILAAVGKLVGENIRMIDLAGRYGAAQLCLLLPNTPLAGARKLADTLAARIAAQEHAEGARRLHVRAICGVAAFDHMGVDDADTLLQAAEAALAAAHR

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Crispr_ID: NZ_CP046904_6

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP046904_6

3140794-3140876

Orphan

Consensus_repeat	Method
GGTGACACGAACTCGGCCGTTATG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP046904_6

>merge|NZ_CP046904|6|3140794-3140876|CRISPRCasFinder
GGTGACACGAACTCGGCCGTTATGTCCCGCCGGACCTGTGGTCCGGCTGCCTGGCACCAGGGGACACGAACTCGGCCGTTATG

>NZ_CP046904|6|5|3140794-3140876|CRISPRCasFinder
GGTGACACGAACTCGGCCGTTATG	TCCCGCCGGACCTGTGGTCCGGCTGCCTGGCACCA
GGGGACACGAACTCGGCCGTTATG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP046904.1\|WP_145874599.1\|3134783_3137312_-\|nitrite-reductase-large-subunit	unknown	unknown	gnl\|CDD\|184951
NZ_CP046904.1\|WP_145874601.1\|3138961_3140095_-\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|372585
NZ_CP046904.1\|WP_145874607.1\|3144640_3145252_+\|DUF2238-domain-containing-protein	unknown	unknown	gnl\|CDD\|182124
NZ_CP046904.1\|WP_145874609.1\|3146800_3148030_-\|putative-DNA-modification/repair-radical-SAM-protein	unknown	unknown	gnl\|CDD\|188431
NZ_CP046904.1\|WP_145874597.1\|3133204_3134410_-\|NAD(P)/FAD-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|224171
NZ_CP046904.1\|WP_145874598.1\|3134420_3134771_-\|nitrite-reductase-small-subunit-NirD	unknown	unknown	gnl\|CDD\|379380
NZ_CP046904.1\|WP_145874612.1\|3150391_3152350_-\|molecular-chaperone-DnaK	unknown	unknown	gnl\|CDD\|234715
NZ_CP046904.1\|WP_145874596.1\|3130507_3133192_-\|molybdopterin-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|239155
NZ_CP046904.1\|WP_145874610.1\|3148139_3148802_-\|carbonate-dehydratase	unknown	unknown	gnl\|CDD\|238448
NZ_CP046904.1\|WP_145874594.1\|3129101_3129866_-\|gamma-glutamyl-gamma-aminobutyrate-hydrolase-family-protein	unknown	unknown	gnl\|CDD\|224982
NZ_CP046904.1\|WP_145874595.1\|3130012_3130411_-\|YgiT-type-zinc-finger-protein	unknown	unknown	gnl\|CDD\|292359
NZ_CP046904.1\|WP_145874613.1\|3152432_3152993_-\|nucleotide-exchange-factor-GrpE	unknown	unknown	gnl\|CDD\|237621
NZ_CP046904.1\|WP_145874605.1\|3142575_3143571_-\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|223787
NZ_CP046904.1\|WP_145874602.1\|3140128_3140728_-\|ANTAR-domain-containing-protein	unknown	unknown	gnl\|CDD\|226230
NZ_CP046904.1\|WP_145874593.1\|3127623_3128994_-\|glutamine-synthetase	unknown	unknown	gnl\|CDD\|223252
NZ_CP046904.1\|WP_145874606.1\|3143581_3144484_-\|TauD/TfdA-family-dioxygenase	unknown	unknown	gnl\|CDD\|225086
NZ_CP046904.1\|WP_145874608.1\|3145238_3146804_-\|UdgX-family-uracil-DNA-binding-protein	unknown	unknown	gnl\|CDD\|274850
NZ_CP046904.1\|WP_145874600.1\|3137344_3138670_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|177665
NZ_CP046904.1\|WP_145874604.1\|3141740_3142574_-\|ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|213260
NZ_CP046904.1\|WP_145874611.1\|3149031_3150147_-\|molecular-chaperone-DnaJ	unknown	unknown	gnl\|CDD\|236757

Protein	Function_ID	Function_description	E-value
NZ_CP046904.1\|WP_145874599.1\|3134783_3137312_-\|nitrite-reductase-large-subunit	gnl\|CDD\|184951	PRK14989, PRK14989, nitrite reductase subunit NirD; Provisional.	0
NZ_CP046904.1\|WP_145874601.1\|3138961_3140095_-\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|372585	pfam13379, NMT1_2, NMT1-like family. This family is closely related to the pfam09084 family.	2.98757e-112
NZ_CP046904.1\|WP_145874607.1\|3144640_3145252_+\|DUF2238-domain-containing-protein	gnl\|CDD\|182124	PRK09867, PRK09867, hypothetical protein; Provisional.	9.0006e-88
NZ_CP046904.1\|WP_145874609.1\|3146800_3148030_-\|putative-DNA-modification/repair-radical-SAM-protein	gnl\|CDD\|188431	TIGR03916, hypothetical_protein, putative DNA modification/repair radical SAM protein. This uncharacterized protein of about 400 amino acids in length contains a radical SAM protein in the N-terminal half. Members are present in about twenty percent of prokaryotic genomes, always paired with a member of the conserved hypothetical protein TIGR03915. Roughly forty percent of the members of that family exist as fusions with a uracil-DNA glycosylase-like region, TIGR03914. In DNA, uracil results from deamidation of cytosine, forming U/G mismatches that lead to mutation, and so uracil-DNA glycosylase is a DNA repair enzyme. This indirect connection, and the recurring role or radical SAM protein in modification chemistries, suggest that this protein may act in DNA modification, repair, or both. [Unknown function, Enzymes of unknown specificity].	0
NZ_CP046904.1\|WP_145874597.1\|3133204_3134410_-\|NAD(P)/FAD-dependent-oxidoreductase	gnl\|CDD\|224171	COG1251, NirB, NAD(P)H-nitrite reductase [Energy production and conversion].	0
NZ_CP046904.1\|WP_145874598.1\|3134420_3134771_-\|nitrite-reductase-small-subunit-NirD	gnl\|CDD\|379380	pfam13806, Rieske_2, Rieske-like [2Fe-2S] domain.	1.51942e-56
NZ_CP046904.1\|WP_145874612.1\|3150391_3152350_-\|molecular-chaperone-DnaK	gnl\|CDD\|234715	PRK00290, dnaK, molecular chaperone DnaK; Provisional.	0
NZ_CP046904.1\|WP_145874596.1\|3130507_3133192_-\|molybdopterin-dependent-oxidoreductase	gnl\|CDD\|239155	cd02754, MopB_Nitrate-R-NapA-like, Nitrate reductases, NapA (Nitrate-R-NapA), NasA, and NarB catalyze the reduction of nitrate to nitrite. Monomeric Nas is located in the cytoplasm and participates in nitrogen assimilation. Dimeric Nap is located in the periplasm and is coupled to quinol oxidation via a membrane-anchored tetraheme cytochrome. Members of the MopB_Nitrate-R-NapA CD belong to the molybdopterin_binding (MopB) superfamily of proteins.	0
NZ_CP046904.1\|WP_145874610.1\|3148139_3148802_-\|carbonate-dehydratase	gnl\|CDD\|238448	cd00883, beta_CA_cladeA, Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism in which the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide is followed by the regeneration of an active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. CAs are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionarily distinct families of CAs (the alpha-, beta-, and gamma-CAs) which show no significant sequence identity or structural similarity. Within the beta-CA family there are four evolutionarily distinct clades (A through D). The beta-CAs are multimeric enzymes (forming dimers,tetramers,hexamers and octamers) which are present in higher plants, algae, fungi, archaea and prokaryotes.	1.78656e-109
NZ_CP046904.1\|WP_145874594.1\|3129101_3129866_-\|gamma-glutamyl-gamma-aminobutyrate-hydrolase-family-protein	gnl\|CDD\|224982	COG2071, COG2071, Predicted glutamine amidotransferases [General function prediction only].	2.66986e-86
NZ_CP046904.1\|WP_145874595.1\|3130012_3130411_-\|YgiT-type-zinc-finger-protein	gnl\|CDD\|292359	pfam15731, MqsA_antitoxin, Antitoxin component of bacterial toxin-antitoxin system, MqsA. MqsA_antitoxin is a family of prokaryotic proteins that act as antidotes to the mRNA interferase MqsR. It has a zinc-binding at the very N-terminus indicating its DNA-binding capacity. MqsR is the gene most highly upregulated in E. Colo MqsR_toxin is a family of bacterial toxins that act as an mRNA interferase. MqsR is the gene most highly upregulated in E. coli persister cells and it plays an essential role in biofilm regulation and cell signalling. It forms part of a bacterial toxin-antitoxin TA system, and as expected for a TA system, the expression of the MqsR toxin leads to growth arrest, while co-expression with its antitoxin, MqsA, rescues the growth arrest phenotype. In addition, MqsR associates with MqsA to form a tight, non-toxic complex and both MqsA alone and the MqsR:MqsA2:MqsR complex bind and regulate the mqsR promoter. The structure of MqsR shows that is is a member of the RelE/YoeB family of bacterial RNases that are structurally and functionally characterized bacterial toxins.	6.19121e-44
NZ_CP046904.1\|WP_145874613.1\|3152432_3152993_-\|nucleotide-exchange-factor-GrpE	gnl\|CDD\|237621	PRK14139, PRK14139, heat shock protein GrpE; Provisional.	4.78825e-82
NZ_CP046904.1\|WP_145874605.1\|3142575_3143571_-\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|223787	COG0715, TauA, ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components [Inorganic ion transport and metabolism].	1.54554e-32
NZ_CP046904.1\|WP_145874602.1\|3140128_3140728_-\|ANTAR-domain-containing-protein	gnl\|CDD\|226230	COG3707, AmiR, Response regulator with putative antiterminator output domain [Signal transduction mechanisms].	8.23399e-56
NZ_CP046904.1\|WP_145874593.1\|3127623_3128994_-\|glutamine-synthetase	gnl\|CDD\|223252	COG0174, GlnA, Glutamine synthetase [Amino acid transport and metabolism].	1.98936e-158
NZ_CP046904.1\|WP_145874606.1\|3143581_3144484_-\|TauD/TfdA-family-dioxygenase	gnl\|CDD\|225086	COG2175, TauD, Probable taurine catabolism dioxygenase [Secondary metabolites biosynthesis, transport, and catabolism].	4.09448e-94
NZ_CP046904.1\|WP_145874608.1\|3145238_3146804_-\|UdgX-family-uracil-DNA-binding-protein	gnl\|CDD\|274850	TIGR03914, SPO1_DNA_polymerase-related_protein, uracil-DNA glycosylase family domain. This model represents a clade within the uracil-DNA glycosylase superfamily. Among characterized proteins, it most closely resembles the Thermus thermophilus uracil-DNA glycosylase TTUDGA, which acts uracil (deamidated cytosine) in both single-stranded DNA and U/G pairs of double-stranded DNA. This domain may occur either as a stand-alone protein or as the C-terminal domain of a fusion with another domain that always pairs with a particular radical-SAM family protein.	9.3349e-79
NZ_CP046904.1\|WP_145874600.1\|3137344_3138670_-\|MFS-transporter	gnl\|CDD\|177665	PLN00028, PLN00028, nitrate transmembrane transporter; Provisional.	1.35067e-138
NZ_CP046904.1\|WP_145874604.1\|3141740_3142574_-\|ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|213260	cd03293, ABC_NrtD_SsuB_transporters, ATP-binding cassette domain of the nitrate and sulfonate transporters. NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.	7.75836e-105
NZ_CP046904.1\|WP_145874611.1\|3149031_3150147_-\|molecular-chaperone-DnaJ	gnl\|CDD\|236757	PRK10767, PRK10767, chaperone protein DnaJ; Provisional.	0

>NZ_CP046904.1|WP_145874602.1|3140128_3140728_-|ANTAR-domain-containing-protein
MSRNLRIVLVHPPQEREASQRAAALHAGLTEAGYELVASLPADFHLPERVARLQPDMIIVDAESDARDVLEHIVVATRDERRPIVMFTEDDNQSSMEAALEAGVSAYIVAGLQPERIKPVLNVALARFRKEQKLLDELEDTKLKLAERKVVDRAKGLLMTRHGMTEDQAYQRLRTMAMNKNLKLAEIAQRILDVEDLLG
>NZ_CP046904.1|WP_145874601.1|3138961_3140095_-|ABC-transporter-substrate-binding-protein
MQIEKTTVNIGFNPLTDCASVVMASVLGFDEKHGIRIALSREISWAGVRDKLMTGELDAAQALYGLVYGTQLGIGAQRRDMAVLMNLNRNGQAITLSRRLAEEGATDGASLAALMRQDGRQYVFAQTFPTGTHAMWLYYWLAAFDIHPMKEARAITLPPSQMVYNLSEGHMDGFCAGEPWGHRAVMDGVGITAATSQQIWPDHPEKVLGASLDFVRAHPNTCRALIAAVLEASRWIDASDANRRATAEIIAGVTYVNTDKAVILPRILGHYENGMGRAWQDEHPLRFHQDGQANYPWLSDGMWFMTQFRRWGLLRADPDYLEVAQAVTQLRLYREAAELAGVAVPHETLRSSTLIDGRVWNGRDPARYAASFPLHQR
>NZ_CP046904.1|WP_145874600.1|3137344_3138670_-|MFS-transporter
MTTNAVSTSARKADSIKLFSLATPQMRAFHLAWLAFFACFFAWFACAPLMPVIKGEFGLTPAQIANINIAAVAITILVRMVIGPMCDRFGPRKAHTALLIFGAIPVFGVAAAQSYEGFLFFRTLIGAIGASFVVTQYHTSVMFGPRVVGTANAATAGWGNAGGGVTQATMPLILAAILMLGVSETMGWRLALIVPGVLMIVVGVLYWNFTQDCPQGNYAELRAAGIEIEGGKKGGWDSFKLAAANYRVWLLFVTYAACFGVELFIHNVAATYYVDKFGLSLKQAGLAAGSFGLLALFARALGGFVSDKMALRSSLNGRVTLLFVLMLGEGAGLIWFAHSESVAMAIVAMLSFGLCVHMACGATYALTPFVDKRALGGVTGIIGAGGNVGAVAAGFLMKGVGDTQHTLSILGFFVVLSAVCAIAARFSAATNAEHALAPATA
>NZ_CP046904.1|WP_145874599.1|3134783_3137312_-|nitrite-reductase-large-subunit
MKIVVIGHGMVGHKFLESLADNPVAGMQVTVLCEEPRPAYDRVHLSEFFSGKSADDLSLVKPGFFERDDMVLRLNARAEAIDLKAKTVTASTGDVLPYDKLVFATGSYPFVPPVEGRDRKDCFVYRTIEDLEAMTEAGKRLNTGVVIGGGLLGLECAKALRDMGLITHVVEFAPRLMAVQVDDGGGRILRNKIAELGVTVHTGKNTTAIVDGEEGQHRMQFADGSHLDVDMIVFSAGIRPRDQLAKEAGLAIGPRGGIVIDNSCMTSDPDVYAIGECALHNGMVYGLVAPGYDMARVVAKQLAGQAAEFTGADMSTKLKLMGVDVASIGDPHGKEEGSRSYQFTDERRQIYKKIVVSNCGKYLLGGVMVGDAGEYGTLLQMMLNRIELPESPEFLILPQSDGKAKPGLGVDALPDSAQICSCNNVTKGAICGAVADGATSIGALKSCTNAGTSCGGCVPLVTQVMKAEMKKQGMDVNNHVCEHFPHSRQELFHLIRVGGIKTFDDLLHKHGKGLGCDVCKPLAASIFATCWNDFVLKKEHAGLQDTNDYYLGNIQKDGTYSVVPRMPGGEVTPDGLIAVGQVAKKYGLYTKITGGQRVDLFGARVDQLPSIWEELIAAGFETGHAYGKSLRTVKSCVGSTWCRYGVDDSVGLAIELENRYKGLRTPHKIKFGVSGCTRECAEAQGKDVGIIATEKGWNLYVCGNGGMKPRHAELFASDLDKATLIKYVDRFLMFYSRTADRLQRTSTWRENLEGGLDYLKEVIIDDKLGVSAELEADMQRVVDTYACEWKEAVTNPETRQRFRHFVNSDAKDDNVVFIEERGQIRPATAEEKKQRVIPIKAA
>NZ_CP046904.1|WP_145874598.1|3134420_3134771_-|nitrite-reductase-small-subunit-NirD
MKRENQAANWTAVCGVDDIVPNTGVCALLNGEQVAVFRLNDGLDTRVFAIGNYDPNAHASVLSRGLVGNLGERIVVASPLYKHHFDLQTGECLEAPEHSVPTWPARIDAGKVWVGA
>NZ_CP046904.1|WP_145874597.1|3133204_3134410_-|NAD(P)/FAD-dependent-oxidoreductase
MKPALVVVGNGMAGMRTVEELLALAPGLYDITVFGAEPHGNYNRILLSPVLAGEKSVDDIMLNTRDWYDANGITLHAGDPVVAIDRRRRIVRAASGLEVRYDRLLIATGSKPFIIPVPGHQLPGVLAFRDIADVESMLDAARNHKHAVVIGGGLLGLEAANGLLKQGMIVTVVHVTDALMNQQLDKPAAQLLQRALEARGLKFMLEANTAEIVGPDRVTAVRFKDGTEVAADLVVMTAGVRPNIDLAKTAGLHCERAIVVDDTLQTYDPRVYAVGECVQHRRATFGLVAPIWEQAKVCASHLAGSGHRRYIQQASPTRLKVTGIELYSVGDFIGGEGSEDLVLRDARRGVYKRLVLDGPRLTGAVLYGDVQDGPWYFDLIQRGADISALRHTLLFGPALAA
>NZ_CP046904.1|WP_145874596.1|3130507_3133192_-|molybdopterin-dependent-oxidoreductase
MNLSQEHLSVATTCPYCGVGCGVKAVPQGPQNATISGDAAHPSNFGRLCVKGSALGETLGLDGRLLHPQVREGGQLRQVSWDDALDRAASQWRRIVDEHGPDAVALYVSGQLLTEDYYVANKLMKGYVGSANIDTNSRLCMSSAVAGHKRAFGEDLVPVDYADLDIADMVVLVGSNTAWCHPILYQRIVRAKEARPDVKLVVIDPRRTATCELADLHLPVKPGTDVWLFNGLLAYLARIGAVDPAFIANHTQGLPDALEAADITPEEVAQACRLKLEDVLAFYEAFAATTKVITGFSMGVNQSSAGTDKVNAIINCHLLGGRIGKPGMGPFSITGQPNAMGGREVGGLANMLAAHLDLDKPDHRAAVQEFWNSPRIADKPGLKAVDLFHAIESGKVKAVWVIATNPIVSLPDADQVKRALAKAELVIASDVVTDTDTNAFAHVLLPALAWAEKDGTVTNSERRISRQRAFLPAPGEARADWKILADFAQRLGYTGFDYAHQSEIFAEHAALSAWKNTLDALPRAFHIGALASLDRSGYDALQPVQWPLGRRVFADGRFSFPDGRARFVPTVPRLPVNTAGGEYPLVLNTGRMRDHWHTMTRTGRAPKLAEHTPESFVDLHPQDALLCGVREGELARVSSAWGSMVARVKHGGGIARGSVFVPIHWNGQTASDARVGAVVNPVVDPISGEPEFKHTPVIVDRFPVQWHGFVLSRTPLDLDMVAYWTRAQGTGFQRYELAGRNRIADFGTWARQLLGVDDDDADWLEYADRSAGVYRAVHVVDDRIAQCIFVSPRPDLPERAWLAGLFASEALTDVERAGVLAGRPLKQGLDAGPTVCSCFGVGRNTICNAIRDKDLKTAAEVTACVKAGGNCGSCVPEIRQLITVVREERVAAAG
>NZ_CP046904.1|WP_145874595.1|3130012_3130411_-|YgiT-type-zinc-finger-protein
MIDLCPECGAADLVYDRHGVSYTYKDRHTTIPSVAAYHCAQCGGVTLDPAAVHRYDELVAQFHRRIDAEAADPAYIRTVRSKLRLDPVEADHVFGTDGFVHLETGRVQPHPSTLKLLKLLERHPELVDELRE
>NZ_CP046904.1|WP_145874594.1|3129101_3129866_-|gamma-glutamyl-gamma-aminobutyrate-hydrolase-family-protein
MRRPIVLVPACTRQIGHFPNHAAQNKYVNAVVLGARCMPLILPALAELTDMEAVLHVADGIMLTGSASNVQADLYGQPIRNPALPLDIARDATTLPLIRAAVKRGIPLLGICRGFQEINVALGGTLHQAVQELPGMMDHRDREDDSLDVQYGPAHPIRIAAGGKFAEMLGHPEEIMVNSLHGQGIDQLAPGLTVEAVAHDGLVEAYTVSSAHGFTLAVQWHPEWRITENPDSMKMFLAFGNACREYQAKRQERA
>NZ_CP046904.1|WP_145874593.1|3127623_3128994_-|glutamine-synthetase
MAIRENFTYTDMDEWLNAKRVTEIECLVPDLTGVARGKILPRVKFTEERGMRIPEAVLGMTVTGNSPVDDPAYDRAISKTDRDMILKADPTTITMVPWATDPTAQVIHDCYFADGRLVDFAPRSVLRKVLKLYEDKGWKPVVAPELEFYLTDKISDPDLPLKAPVGRSGRAETSRQVYSIDAVNEFDPLFEDIYDYCDEMGLDVDTLIHEIGAGQMEINFLHGEPLGLADKVFFFKRTLREAALKHEMYATFMAKPMAGEPGSAMHIHQSVVDAKTGWNIFSNEDGSPSALFKHYIGGLQRFMPSALAIVAPYVNSYRRLVRHTAAPINIQWGVDNRTVGFRVPESGIQDRRVENRIIGSDANPYLALAVTLACGYLGMTEQLEPTPITQGSAYEMEYELPQGLPEALALLRKEEKLRGVLGERFIDVYAAIKDLEHQEFMTVISPWEREHLLLHV
>NZ_CP046904.1|WP_145874604.1|3141740_3142574_-|ATP-binding-cassette-domain-containing-protein
MAPLQVVRPHAQAEPLLRARGVTLEYRSGDHAVRATQDVDFDVFGGDRFVLLGPSGCGKSSLLKAVGGFLQPAAGTVSLNGHVVTRPGPDRIAVFQEFDQLPPWKTVLQNVMFPLLASKSAGRAEARERARHWIARVGLERFEHAYPHTLSGGMKQRVAIARALAMQPAVLLMDEPFAALDALTRRTMQEELIRLWAEAPFTLLFVTHSIEEALVVGNRILLLSPHPGRVRAELNSHQFGLHSAGGAEFQQAVERTHDLLFGVPPESHVETAERIAL
>NZ_CP046904.1|WP_145874605.1|3142575_3143571_-|ABC-transporter-substrate-binding-protein
MKPLKLSTAIAALVLATAAHAEGRIRIAEQFGVTYLLLNIAQEQKLIEKYGKRNGVDIAVEWTKLSGGAAINDALLSGSIDIAGAGVGPLITLWDRTKDRHNVKGVAALGSFPYYLVSNNPKVKSIADFTDKDRIALPAVTVSVQSRILQMAAAKQWGDKEFARLDKLTQSLPHPDAASAIIAGGTEISGHFGTPPFQEQELAQNRNARIVLNSYDVLGGPSSSTLLYATEKYRKENPKTYRSFVQALAEAADYAARNPEGAADIYLKVNQSKVDRNLLLKVFRSPEVQFRIAPQNTLPIAQFMHRVGAVKNKPASWRDYFFDDPLVDQGS
>NZ_CP046904.1|WP_145874606.1|3143581_3144484_-|TauD/TfdA-family-dioxygenase
MSAVLSAVHDARSVPLNVSLDIRPFEGPLGAEVIGLDLARPLSRRALLRLHAAHLEHHVLVFRDQRITPQQQVAFSRLFGPLQIHVLRNFQLAGVPEVLVVSNIIEDGKPIGLGDAGHFWHSDLSYKEKPSLGSLLHAQELPAEGGDTLFANVHLAYDTLPEALKNAIRHARAEHSYLKQYAELQRRSPWRPHLTQAQIDEVKPVVHPVVRTHPETGRQALFVSEHFTTRIIGLPRDESDALLKELFAHSVKPQHIYRHRWQPHDMVFWDNRSLMHLAAGCPPDQRRKLYRTTIEGDVPY
>NZ_CP046904.1|WP_145874607.1|3144640_3145252_+|DUF2238-domain-containing-protein
MRPLHLSLCLILVAVLAWSGFAPYDRVTWWLEVLPVLIAVPVLALSYRRFPLTDMLYVLIVLHAIVLMVGGAYTYARVPFGFELQHWLHLQRNPYDRIGHFMQGFVPALVAREILLRGGHVTGRRMLAFFCLCIVMAISAWYELVEWAAAVALGQGADEFLGTQGDQWDTQSDMFMAMIGGACALLLSRWHDRALAALQLSRR
>NZ_CP046904.1|WP_145874608.1|3145238_3146804_-|UdgX-family-uracil-DNA-binding-protein
MSVPALDPVALALSGQPVPAGSFDAWRAAARALIVRHVPPESVQWSGQDGGGDLLSGMPPVAVEVEVEVEVNAEVTVNAQTPECPSDPPPLIATTPPVVSRRLMEMLRSASCYRAPDRWAFLYRVLWRWHRGEHEVISMADVDGARLHHMVKAVRHEEHDMHAYLRFRERPLDAGEPRFVAWFEPAHDVLPQVAEHFAKRMGKTSWMIATPEATVLWDGATLHTGDALAKTAADFADAGEALWLTYYRSIFNPARLNADIMHGHIRQRFWKNLPEAAVVPHMVTQAAAGARKVGQLDTVGKRGGTAIPISAEKAAPERQQPSSLDECRRCDLWQNATQAVAGQGARRARIMLVGEQPGDQEDLAGKPFVGPAGELLDKAMDEAGMDRRKVYVTNAVKHFKWEPRGKRRLHKTPAQKEVMACHYWLETELETIAPDVLVALGSTALKSILQSGSVTMKDYMDQPFQHDGRWVVVTYHPSYALRVPDRESRHAAFAAIVAALKTAQRLAEGGSADPSTDPSAG
>NZ_CP046904.1|WP_145874609.1|3146800_3148030_-|putative-DNA-modification/repair-radical-SAM-protein
MELIDKLEILADAAKYDASCASSGAPKRSSEGKDGLGATNGMGICHSYTPDGRCVSLLKILLTNFCIYDCQYCVNRRTSNVPRARFTVQEVVKLTVDFYLRNYIDGLFLSSGIIQSADYTMEQLVAVARELREVHQFRGYIHLKTIPDADPALIEAAGRYADRLSVNIELPTQDSVQKLAPEKSVHTIKLAMGSIRLKLDEKEAEPKAPKFAPAGQSTQMIVGADASDDARILTTAETLYGSYKLKRVYYSAFSPIPESPSSVPAAPPPLLREHRLYQADFLLRGYGFQVKELLPASGNLPLDIDPKLAWALTHREHFPMDLNRAEPQMIARIPGIGLKNAQRIVELRRMRQVRWADLARLKCSMKKVAPFIVTADYRPAQDTAPSDALRRAMADVPEQMALFPELQAA
>NZ_CP046904.1|WP_145874610.1|3148139_3148802_-|carbonate-dehydratase
MSDTKPSDLRDLLNNNRRWADSMVERDPEFFKRLAAQASPEYLWIGCSDSRVPANELLGLLPGDVFVHRNIANVVVHSDLNCLSVLQFAIDVLKVKHVIIVGHYGCKGVHAALTGARVGLVDNWLRHVHDVSAKHERYLGTVLDERVRSEKLVELNVVEQVINVCSTTIVQDAWDRGQQVSVHGWVYGLKDGHLHDLEMTVSQLSDLPPKLQARLNHYSA
>NZ_CP046904.1|WP_145874611.1|3149031_3150147_-|molecular-chaperone-DnaJ
MAKRDYYETLGLAKNASEDEIKKAYRKLAMKYHPDRNPDNKEAEEKFKEVKEAYEMLTNPEKREAYDRYGHAGVDPNMGGGGFGAGGFGDAFGDIFGDIFGGGRRSAGPQVYRGADLRYNLEITLEQAAHGFDTTIRVPAWDKCDTCHGSGAKPGTSPVTCSTCGGHGQVRMQQGFFSIQQTCPKCHGTGKIIPEPCPACSGAGRIKRNKTLEVKIPAGIDNGMRIRSSGNGEPGTNGGPPGDLYVEIHIKPHQVFQREGDDLHCEMPISFAKAALGGEIEVPTLSGKVSFTVPEGTQSGKTFRLKGKGVKGVRSGYPGDLFCHVVVETPVKLTEKQKELLRELERSTTEGGAKHSPQSKTWMDKVKDFFE
>NZ_CP046904.1|WP_145874612.1|3150391_3152350_-|molecular-chaperone-DnaK
MGKMIGIDLGTTNSCVAIMENGQPKVIENAEGARTTPSIIAYQDDGEILVGAPAKRQAVTNPKNTLFAVKRLIGRKYEEKEVQKDISLMPYQIMKADNGDAWIGVRDKKLAPPQISAEVLRKMKKTAEDYLGEEVTEAVITVPAYFNDSQRQATKDAGRIAGLDVKRIINEPTAAALAFGLDKTDKGDRKIAVYDLGGGTFDVSIIEIADVDGEKQFEVLSTNGDTFLGGEDFDQRVIDYIIEEFKKINGLDLKKDPIALQRIKASAERAKIELSSSQQTEINEPYIAMANGAPVHLNLKITRAKLESLVEELIAKTIEPCRTAIKDAGVKVSDIDDIILVGGMTRMPKVQEKVKEFFGKDPRKDVNPDEAVAVGAAIQGAVLSGDRKDLLLLDVTPLSLGIETLGGVMTKMIHKNTTIPTKFSQVFSTADDNQPAVTIKVYQGEREIAAGNKALGEFNLEGIPPAARGTPQIEVTFDIDANGILHVGAKDKATGKENKITIKANSGLSEEEIQKMVKDAELNAEEDKKVKELAESRNQADALVHSTKKSLTEYGDKLEAGEKEKIESAISALEGEIKSGDKASIDAKIATLTEAAQKLGEKMYADMQAQQAAAGGGAEAGAQQQQQAGGSDNRAQQDDVVDADFKEVKDNK
>NZ_CP046904.1|WP_145874613.1|3152432_3152993_-|nucleotide-exchange-factor-GrpE
MQDQENQASPNPEEAQQPAQAASQQQAPADGAATPSLEEQLSATEAKLAEMHEAFLRAKAEGDNIRRRAQEDVAKAHKFAVESFAEALLPVRDSLEMALKVEAPTLESLKEGVEMTLKQLTSAFERNRLLEVVPNVGDKLDPNRHQAVAMVPAEQEANTVVAVLQKGYTIADRLLRPAIVTAAQPK

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Crispr_ID: NZ_CP046904_7

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP046904_7

4983547-4983655

Orphan

Consensus_repeat	Method
AGGGTCAGACCCGACGCGGGTCTGAC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP046904_7

>merge|NZ_CP046904|7|4983547-4983655|CRISPRCasFinder
AGGGTCAGACCCGACGCGGGTCTGACTCAGGATGTTGGTTATTGGGGTGGCTGTCGCCAATTCAACCCCGAAACCCAGAGGCTAGGGTCAGACCCGACGCGGGTCTGAC

>NZ_CP046904|7|6|4983547-4983655|CRISPRCasFinder
AGGGTCAGACCCGACGCGGGTCTGAC	TCAGGATGTTGGTTATTGGGGTGGCTGTCGCCAATTCAACCCCGAAACCCAGAGGCT
AGGGTCAGACCCGACGCGGGTCTGAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP046904.1\|WP_145872763.1\|4993840_4994743_-\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|182183
NZ_CP046904.1\|WP_145872758.1\|4987318_4988314_-\|BMP-family-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|380577
NZ_CP046904.1\|WP_145872751.1\|4981237_4981831_+\|type-II-secretion-system-protein	unknown	unknown	gnl\|CDD\|225076
NZ_CP046904.1\|WP_145872764.1\|4994756_4995668_-\|pseudouridine-5'-phosphate-glycosidase	unknown	unknown	gnl\|CDD\|377251
NZ_CP046904.1\|WP_145872755.1\|4983662_4984634_-\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224005
NZ_CP046904.1\|WP_145872761.1\|4992082_4993039_+\|DUF979-family-protein	unknown	unknown	gnl\|CDD\|377620
NZ_CP046904.1\|WP_145872757.1\|4985709_4987236_-\|ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|226364
NZ_CP046904.1\|WP_145872746.1\|4976482_4976896_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP046904.1\|WP_145872752.1\|4981760_4982516_-\|DeoR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224268
NZ_CP046904.1\|WP_145872762.1\|4993047_4993695_+\|pyroglutamyl-peptidase-I	unknown	unknown	gnl\|CDD\|237299
NZ_CP046904.1\|WP_145872750.1\|4980388_4980880_+\|prepilin-type-N-terminal-cleavage/methylation-domain-containing-protein	unknown	unknown	gnl\|CDD\|225076
NZ_CP046904.1\|WP_145872749.1\|4978099_4980385_+\|general-secretion-pathway-protein-GspD	unknown	unknown	gnl\|CDD\|227133
NZ_CP046904.1\|WP_145872753.1\|4982601_4983192_+\|GDP-mannose-pyrophosphatase	unknown	unknown	gnl\|CDD\|184971
NZ_CP046904.1\|WP_145872760.1\|4991399_4992086_+\|DUF969-family-protein	unknown	unknown	gnl\|CDD\|368767
NZ_CP046904.1\|WP_145872759.1\|4988816_4991066_+\|TonB-dependent-receptor	unknown	unknown	gnl\|CDD\|238657
NZ_CP046904.1\|WP_145873264.1\|4980897_4981263_+\|prepilin-type-N-terminal-cleavage/methylation-domain-containing-protein	unknown	unknown	gnl\|CDD\|130771
NZ_CP046904.1\|WP_145872748.1\|4977587_4978085_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP046904.1\|WP_145872754.1\|4983233_4983539_+\|c-type-cytochrome	unknown	unknown	gnl\|CDD\|227001
NZ_CP046904.1\|WP_145872747.1\|4977073_4977586_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP046904.1\|WP_145872756.1\|4984630_4985713_-\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|226962

Protein	Function_ID	Function_description	E-value
NZ_CP046904.1\|WP_145872763.1\|4993840_4994743_-\|LysR-family-transcriptional-regulator	gnl\|CDD\|182183	PRK09986, PRK09986, LysR family transcriptional regulator.	2.29989e-103
NZ_CP046904.1\|WP_145872751.1\|4981237_4981831_+\|type-II-secretion-system-protein	gnl\|CDD\|225076	COG2165, PulG, Type II secretory pathway, pseudopilin PulG [Cell motility and secretion / Intracellular trafficking and secretion].	5.36148e-05
NZ_CP046904.1\|WP_145872764.1\|4994756_4995668_-\|pseudouridine-5'-phosphate-glycosidase	gnl\|CDD\|377251	pfam04227, Indigoidine_A, Indigoidine synthase A like protein. Indigoidine is a blue pigment synthesized by Erwinia chrysanthemi implicated in pathogenicity and protection from oxidative stress. IdgA is involved in indigoidine biosynthesis, but its specific function is unknown. The recommended name for this protein is now pseudouridine-5'-phosphate glycosidase.	0
NZ_CP046904.1\|WP_145872755.1\|4983662_4984634_-\|ABC-transporter-permease	gnl\|CDD\|224005	COG1079, COG1079, Uncharacterized ABC-type transport system, permease component [General function prediction only].	8.48626e-92
NZ_CP046904.1\|WP_145872761.1\|4992082_4993039_+\|DUF979-family-protein	gnl\|CDD\|377620	pfam06166, DUF979, Protein of unknown function (DUF979). This family consists of several putative bacterial membrane proteins. The function of this family is unclear.	1.33575e-139
NZ_CP046904.1\|WP_145872757.1\|4985709_4987236_-\|ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|226364	COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only].	0
NZ_CP046904.1\|WP_145872753.1\|4982601_4983192_+\|GDP-mannose-pyrophosphatase	gnl\|CDD\|184971	PRK15009, PRK15009, GDP-mannose pyrophosphatase NudK; Provisional.	4.64746e-68
NZ_CP046904.1\|WP_145872752.1\|4981760_4982516_-\|DeoR-family-transcriptional-regulator	gnl\|CDD\|224268	COG1349, GlpR, Transcriptional regulators of sugar metabolism [Transcription / Carbohydrate transport and metabolism].	2.01701e-83
NZ_CP046904.1\|WP_145872762.1\|4993047_4993695_+\|pyroglutamyl-peptidase-I	gnl\|CDD\|237299	PRK13197, PRK13197, pyrrolidone-carboxylate peptidase; Provisional.	1.37582e-125
NZ_CP046904.1\|WP_145872750.1\|4980388_4980880_+\|prepilin-type-N-terminal-cleavage/methylation-domain-containing-protein	gnl\|CDD\|225076	COG2165, PulG, Type II secretory pathway, pseudopilin PulG [Cell motility and secretion / Intracellular trafficking and secretion].	2.00676e-16
NZ_CP046904.1\|WP_145872749.1\|4978099_4980385_+\|general-secretion-pathway-protein-GspD	gnl\|CDD\|227133	COG4796, HofQ, Type II secretory pathway, component HofQ [Intracellular trafficking and secretion].	1.83252e-79
NZ_CP046904.1\|WP_145872756.1\|4984630_4985713_-\|ABC-transporter-permease	gnl\|CDD\|226962	COG4603, COG4603, ABC-type uncharacterized transport system, permease component [General function prediction only].	1.30634e-90
NZ_CP046904.1\|WP_145872760.1\|4991399_4992086_+\|DUF969-family-protein	gnl\|CDD\|368767	pfam06149, DUF969, Protein of unknown function (DUF969). Family of uncharacterized bacterial membrane proteins.	1.37614e-96
NZ_CP046904.1\|WP_145872759.1\|4988816_4991066_+\|TonB-dependent-receptor	gnl\|CDD\|238657	cd01347, ligand_gated_channel, TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) anti-parallel beta-barrel. Ligands apparently bind to the large extracellular loops. The N-terminal 150-200 residues form a plug from the periplasmic end of barrel. Energy (proton-motive force) and TonB-dependent conformational alteration of channel (parts of plug, and loops 7 and 8) allow passage of ligand. FepA residues 12-18 form the TonB box, which mediates the interaction with the TonB-containing inner membrane complex. TonB preferentially interacts with ligand-bound receptors. Transport thru the channel may resemble passage thru an air lock. In this model, ligand binding leads to closure of the extracellular end of pore, then a TonB-mediated signal facillitates opening of the interior side of pore, deforming the N-terminal plug and allowing passage of the ligand to the periplasm. Such a mechanism would prevent the free diffusion of small molecules thru the pore.	1.85317e-39
NZ_CP046904.1\|WP_145873264.1\|4980897_4981263_+\|prepilin-type-N-terminal-cleavage/methylation-domain-containing-protein	gnl\|CDD\|130771	TIGR01710, Type_II_secretion_system_protein_G, type II secretion system protein G. This model represents GspG, protein G of the main terminal branch of the general secretion pathway, also called type II secretion. It transports folded proteins across the bacterial outer membrane and is widely distributed in Gram-negative pathogens. [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis].	1.27173e-17
NZ_CP046904.1\|WP_145872754.1\|4983233_4983539_+\|c-type-cytochrome	gnl\|CDD\|227001	COG4654, COG4654, Cytochrome c551/c552 [Energy production and conversion].	5.18711e-25
NZ_CP046904.1\|WP_145872758.1\|4987318_4988314_-\|BMP-family-ABC-transporter-substrate-binding-protein	gnl\|CDD\|380577	cd06354, PBP1_PrnA-like, periplasmic binding domain of basic membrane lipoprotein, PnrA, in Treponema pallidum and its homologs from other bacteria and Archaea. Periplasmic binding domain of basic membrane lipoprotein, PnrA, in Treponema pallidum and its homologs from other bacteria and Archaea. The PnrA lipoprotein, also known as Tp0319 or TmpC, represents a novel family of bacterial purine nucleoside receptor encoded within an ATP-binding cassette (ABC) transport system (pnrABCDE). It shows a striking structural similarity to another basic membrane lipoprotein Med which regulates the competence transcription factor gene, comK, in Bacillus subtilis. The members of PnrA-like subgroup are likely to have similar nucleoside-binding functions and a similar type 1 periplasmic sugar-binding protein-like fold.	4.95981e-112

>NZ_CP046904.1|WP_145872754.1|4983233_4983539_+|c-type-cytochrome
MKYLVAASLLSLAATAAIAATPEELAKSKNCMACHAVATKLVGPAYKDVAAKYKGQKDAEDKLVQKVMKGGSGVWGPVPMPPNQVTDAEAHTLVKWVLSQK
>NZ_CP046904.1|WP_145872753.1|4982601_4983192_+|GDP-mannose-pyrophosphatase
MHVRIKEVKTLSDDWYLLKKTTFDYRRRDGSWQTMSRETYDRGHGAVILLYNLARRTVVLVRQFRFPAFGYGGTHDGYLIEAPAGLLDAASPEERIRAEVAEETGFHVQHVRRVFDAFMSPGSVTERLHFFVAEYDASQRGGAGGGVAAEGEDIEVLELDIDAALAMVADGRIEDGKTIMLLQHARLSLFGAPAAP
>NZ_CP046904.1|WP_145872752.1|4981760_4982516_-|DeoR-family-transcriptional-regulator
MLTRQRKELLLRILKEEGQIVAKTLSESLGLSEDTIRRDLRELAKEGLLTRVHGGALPASPAQANFAVREKISADAKPAIARAAAAMIKPGQVVFIDGGTTAVQLARALPRDLRATVITHSPSVAVELVEHPDVDVIIIGGRLFKHSIVAMGAAAVEAVAQFRADLFFMGVCSLHPEAGITTGDFDEAAMKRALSAHAQRTVVLASPEKLGTAAPFRIAPLETIDHIVVNRGVDAALLAPYREMGIEVTLA
>NZ_CP046904.1|WP_145872751.1|4981237_4981831_+|type-II-secretion-system-protein
MARHTRTCSTTSYRREGGFTYLAVLFMTATMGVLLASIGMLWSTAQQREKERDLLFTGDAYRRAIGMYYERTPGTVKRYPAALEDLLKDERQLATVRYLRRPFRDPMNLHGEWGIIRGPDGGIAGIFSQASGKPLKRNGFKDRDAGFENAATYAQWRFFYEPSPQPKLELLENGTTPASPRSPSPDTAPAAPHRRPG
>NZ_CP046904.1|WP_145873264.1|4980897_4981263_+|prepilin-type-N-terminal-cleavage/methylation-domain-containing-protein
MKGFTLIELLVAMAIIAALLSLAAPRYIGNIDRSKEAVLRENLATLREVLDKYYADNGVYPPNLEALVEARYMRRVPLDPVTESASTWVLVPPPQADQGAVFDVRSGAKGKTHDGTPYQNL
>NZ_CP046904.1|WP_145872750.1|4980388_4980880_+|prepilin-type-N-terminal-cleavage/methylation-domain-containing-protein
MSACRPASGMTRGFTIVELLVTIVIVSVLASAALPMAELAVRRNKEQELRRSLREIREALDNYKLATDEGRIKKSADASGYPPSLEVLVEGVEDIRSAEQRRLFFLRRIPRNPFADGKAPPNDGWGKRSYSSRHDDPKEESDVYDVYAQTEGTGMNGIPYREW
>NZ_CP046904.1|WP_145872749.1|4978099_4980385_+|general-secretion-pathway-protein-GspD
MKHWLNIAACGAAALLLASCAGSRLHNAGLQSVEQGKLEEGIEQLQRAVQEEPGNARFKSDLLTRKSFAIDTLLQQADTAHSQARVGDAEAFYRRVQALDPRNPRAAAGLDMLLRERSHPNMLAEAETSLQAGDSERALGLVRNVLHENPSNPSALGLRQRIEAAQTQTRLVEPMLRVGQTPPINLEFRDATLKLVFDALARASGVNFVMDKDVRTDARTTIFLRQATLEDAIDFILQTNKLEKKVLNRNSMLIYPSTPDKLKDYQELVLKGFYLSNADAKQTQALLKAMLKSKDTFVDEKLNLLVMRDTPDAVRLAEKVIAMHDLAEPEVMLEVEVLEIKRSRLLELGVQWPNQLVLSPLGVGTGTTLADLRNLNSERISANIGSTAINLRRSVGDANILANPRIRARNKEKAKIMIGDKVPVSTSTTTATGVVSESVQYLDVGIKLDVEPTVYLRDEIAIKIGLEVSSISSEVKTPAGSLAYQIGSRSASTVLRLKDGETQVLAGLINDEDRMSASRVPGLGDMPLVGRLFGSQKDDRNKTEIVLSITPHLVRNVVKPDAGASEFWSGTESSLRTHPLTMQILEAKNVLDQPGRSPNEATQMRGPAVSAISVAPVIKADPSEIVLRTLAPSEVNVGEQFKVVVEMRADGEVRSLPFQLGFDPAAFQVLNVSEGTYFRQNEGQSTISSNIDSSAGKVLVSVVRNGEGGVPGDHSVAVVTMRALAAKPAAEIRLLSAAPITGGSATVVPVLPAPITVRIGE
>NZ_CP046904.1|WP_145872748.1|4977587_4978085_+|hypothetical-protein
MARLELIIRIFCALSVVSCTKQANQSFEPPELTKQATGRPVAPTVRKPRLVATETTEEVFPHAGNPFAEKSWNRSVEVASSPPLPPPLPTAAKALAPPLPFTYAGKMEQSPGKWTFYLSRGDESFALSKGDTFDNVYRLVDADASRLVIEYLPLSEKQTLPIGAE
>NZ_CP046904.1|WP_145872747.1|4977073_4977586_+|hypothetical-protein
MLRHHLRYLLYVGFLFVVLGTSLSFISLTIDAMKGKVRIIDAMRRYKSHDSFRYPAVSDNEGHPHTSELIARLAKTDEVVALLDGILSLASSKGLQIDAGSYELQKTESRVADEYIMSFSATGPYVSIQKFLLEAQEQYPALILDKVSFSRESIGAARLEARVQFALLVK
>NZ_CP046904.1|WP_145872746.1|4976482_4976896_+|hypothetical-protein
MEKDRIGSLLMHHCDFAKKLSSDERKQIVARLRDNLDVDIEVGNPWDSVEAPDGVYRTDGWAVIPEYIGESSCLVFSPGAREIWNFSSGGALLDFLSNSPALEYYVCDLACSFLLCCNHHDYVIGWGKAQQWVANLS
>NZ_CP046904.1|WP_145872755.1|4983662_4984634_-|ABC-transporter-permease
MTFEDLHLGSIVVSTVRNAPVLLFAAMAGLFAERSGVIDIGLEGKILASAFVSAAVAFTTQNPWYGILAGIAVSVVIALLQGAIAITQKGNQLVAGIAINIAMSGLTFVVAQYFFQQGGRTPDLGEARLGEVVLPGSAAVADVPVLGWIWTQLLGGHTVLVYAAFALVPLVHWVLYHTRFGLRLRACGENPHAADAAGVSVERTRYLAMLIAGVLCSFSGAYLAIVQSGFFLRDMSAGAGYLALTAMVFGNWRPFYTFLGCLMFGFFGAVQIQLEGVDLPVVGRIPGALIQMVPYVVTVIVLAGLMAKSVAPKAIGVPFVKSR
>NZ_CP046904.1|WP_145872756.1|4984630_4985713_-|ABC-transporter-permease
MTTNDLPRWATAVALPLLNLLSALLVAALVIHLLGEDPVESMHILINSAVVNPEGLSYTLFYASTFVFTGLAVSLAMHAGLFNIGAEGQMYLGGLGITIAMLAFDATLPWYLLIPAGMLGAALFGALWAFVPGYLQAKRGSHIVVTTIMFNYIASQLMNFVIVKFLIPAGEQNTASRVFSQAAEMPRLSDWFPVLGDTPLNVSFFLAIIALVIYGVMVSRSSWGYKLRAVGLNKHAAHYAGVKISAMIVVTMLISGALAGLGAVNSIMGSTHYLSLNFVGGAGFIGIAIALMGRQHPVGIFLSAVLFGALTQGGFDLSLEKPNIPPEMVIFIQGLIILFCGAMEYLYAPVLAKLLKGKQA
>NZ_CP046904.1|WP_145872757.1|4985709_4987236_-|ATP-binding-cassette-domain-containing-protein
MQPAVEFRGISKHFGAVKANTDVSFTVAKGAIHGLVGENGAGKSTLMSILYGYYQADGGDILLDGQVRQIRSSQEAIRLGIGMVHQHFMLVDNMTVLDNVMLGTEGGFRLASHRAEAEAKLREICARYRLDVDPLATIHDLSVGVQQRVEILKQIYRSANILILDEPTAVLTAQETESLFEILKLFKEQGKTIILITHKLQEIMDITDTVTVMRAGRVVGAVETARTSKEELANMMVGRPIENNLPRAPYSPGKPVLEVKGLQLKDNTGVSLLDDIDFTLRAGEIVAIAGVSGNGQSELMEILSGMRLPTAGSADFEGKPLPFKRHDPDGLPLVFRDLGIAHVPEDRLRDGVVKNFSVMQNTFLGYQDHIKGRWGLFDFKRIAERCAGLLKEFDVRPPNPDLRIGLLSGGNQQKVVIAREVLAKPKLMLVGQPTRGVDIGTIEAIHTQLLALRDAGVAILLVSVELEEVRALADRILVMCGGRITGELPINEFDTTRIGLLMGGTHKS
>NZ_CP046904.1|WP_145872758.1|4987318_4988314_-|BMP-family-ABC-transporter-substrate-binding-protein
MKIKQLSMMIAAVAVSASAFAADPKLGIVYDAGGKFDKSFNQSAFEGASRFKKDTGINFIEVQASSDTQAEQVLRGLARKKLDLIASIGFAQTQAVQKVAKEFPNVRFVLIDGVAQGNNVNSVTFKEEEGSYLVGVAGALASRTKKLGFIGGIDIPLIRTFACGYAQGAKSVDKKAEIVQNMVGTTAAAWNDPAKGGELARSQFERGVDVVFAVAGGSGMGTLQMAKEKGKLAIGVDSNQNHLYPGTMLTSMVKRVDNAVYDSFMQMKNGTWKAGVTAKGLKEGGVDWALDANNRKLITPEIEKKVLGARKDIIDGKIKVIDIRTGAACPA
>NZ_CP046904.1|WP_145872759.1|4988816_4991066_+|TonB-dependent-receptor
MKQTHRYAARSMMALAIAAAFPLAYAQESTDAPVEKAQPGQLETVIVTAQRRAENIKDVPMSIATVKGEKLDVLTSGGQDIRFLSGRSPSVAIESDYGRTFPRFYIRGLGNTDFDLNASQPVGLVMDDIVQENPMLKGFPVFDVDQVEVLRGPQGTLFGRNSPAGVIKFDSAKPVFKQEGYLAAGFGKDRVRNVDGAYNLPVSDTVAIRFAGLSQHRGDRVSNDRPTGTREFEGYKDNAARLQVLVKPTANFSALFNVHGRDMDGTATLFRANILKTGTNDLVDGFDYDKYPTDGINEQHLKNKGASMRLRWDLPGVTLHSITGYEKLEFYSRADVDGGYGAVYAPPMGPGFIPFVVETADLIPNHKQISQEFRAESTNKGPLQWIAGLFYFKEDIQIDSIAFNSLAAGNPQVPNYATQTQNAKSYAVFGSLNYAVSDRLKLRGGVRYTSDKKDFVAQRIETTGRTYLPLHDDSSNISWDASGTYVVNPDTNVFARVATGYRAPSMQGRLNDLTSRPSMAGAEKVLSVEAGVKQDLFNRRARMSATVFHYRVKDKQLTAGSGSVNMNQLLNADKAIGQGVELDLQANLSQNFSATFGSSYNDTEIKDASLFVLPCGGGCTVTNPVSFVNGSRVALINGNPLPRAPKWQHNFTLKYSAPVANGEVYAFTDWSYRSSYNFFLYEAVEYKAKDLLEGGLRVGYKWGDGKYDLALYGRNITNEVQSVGAIDFNNMTGILNEPRTYGVQFRMNF
>NZ_CP046904.1|WP_145872760.1|4991399_4992086_+|DUF969-family-protein
MQSAVNLWPLVGVAVVIVGFLLRVHPVLVVVAACVATGASVLMSPLELLAALGTAFVKTRNLPMILLLPLAAIGLLERFGLREHAQAAIGRVRSATAGRLLILYLAVRELSAALGLTSIGGHPTMVRPLIAPMAEGVAERQAGKLPEEARMRVRAMAAATDNVGLFFGEDIFVAFGAIVLMQTILRGEGIEADPLHMALWGIPTAVSAFIIHAWRLHRLDVYLAGARR
>NZ_CP046904.1|WP_145872761.1|4992082_4993039_+|DUF979-family-protein
MIVTLELFYYVVGGLLAAVAVMSLTDRSNPRRYTSALFWALYAVIYLAGDVLPPEVAGGMMVAMALLAGCGGVRAGKPAVLPEGERRASAARLGHKLFLPALAIPFVTILLATLLKDVKVGSLLLIDPKQATLVGLGCASIIAVPLACALTRSTPPQALRESRRLVDAMSWGFVLPHMLAVLGLLFTQVGVGKAVAYLATSSIDMDTKLVAVVVYCAGMALFTIVMGNGFAAFPVMTGGVGIPVLVGVYHADPAVMAAIGMFSAYCGTLMTPMAANFNIIPAALLELPDKHAVIRVQIPTALPLLLVNMALLYFLMNR
>NZ_CP046904.1|WP_145872762.1|4993047_4993695_+|pyroglutamyl-peptidase-I
MNTVLLTGFEPFNQQPINPAWETVRALDGWRGDDHVVVSRQLPCVFGDALAALHAAIDELRPDVVIAVGQAGGRSDITVERVAINVDDAPIADNRGARIVDEPVIPGGPVGYFSTLPIKAIVHALREAGIPASVSQTAGTFVCNHVFYGLMHALRDKPAIRGGFIHIPFLPQQAARQPVPTPSMSLADMIEAVKIAVATTCSTTGDLREAGGGTH
>NZ_CP046904.1|WP_145872763.1|4993840_4994743_-|LysR-family-transcriptional-regulator
MSIDLKQLKYFLAVAEEKSFSRAAERLHISQPPLSQQIMKLEAELGVKLFARTTRSFELTVAGRALMHEAADLLAKMRMTIDTVRQIDRGEVGRLRVGIVGSAMWGPIPSLLEEFQSKYPRVTWTIHEFGPTVQYDALRAKQIDVGFWREPKLDENDLKNDNLRQELCFRENVCVAVNEHHPLAKMDAIELADIADEPMLTLALDKSAFPRYLIQCCVNAGFQPTIFQEASEPQTLLAMVGAGLGVTLMPETTSRIGWPGVVFLPIRTNPPSANLYITYTTTDDAPVVRAFLNILRPPER
>NZ_CP046904.1|WP_145872764.1|4994756_4995668_-|pseudouridine-5'-phosphate-glycosidase
MQQYLAFSPEVTAARAAGKAIVALESTIISHGMPYPQNVQTAREVEQIIRDGGAVPATIALIGGKICVGLTDEQLELLGKSPDAMKVSRRDMAYALSQKKLGATTVAATMICAQLAGISVFVTGGIGGVHRGAETSFDISADLQELAQTNVAVVCAGVKSILDIGLTLEYLETQGVPVVSVGQQGFPAFFTRESGFNADFRLDTPAEQAAFVKTKWELGLRGGVVVAAPVPEQEAMPKEEIDGITLQALQEAEENGVTGKKVTPFLLARIKTLTGGRSLATNIALVKNNARVGAALAQALLTA

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Crispr_ID: NZ_CP046904_8

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP046904_8

5371283-5371417

Orphan

Consensus_repeat	Method
ACGTCGCCCGGGCCGCTG	PILER-CR

2 spacers

The CRISPR arrays of NZ_CP046904_8

>merge|NZ_CP046904|8|5371283-5371417|PILER-CR
ACGTCGCCCGGGCCGCTGGAGCGCAGCGCGAGCTCGCGCACGTTGCCGTTCACGCGCACGTCGCCCGGACCGCTGACCGTCAGCTGCAGCGCGTCGCCGTGGACCCGCTCGACGCTGACGTCGCCGGGGCCGCTG

>NZ_CP046904|8|2|5371283-5371417|PILER-CR
ACGTCGCCCGGGCCGCTG	GAGCGCAGCGCGAGCTCGCGCACGTTGCCGTTCACGCGC
ACGTCGCCCGGACCGCTG	ACCGTCAGCTGCAGCGCGTCGCCGTGGACCCGCTCGACGCTG
ACGTCGCCGGGGCCGCTG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP046904.1\|WP_145873033.1\|5375027_5375213_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP046904.1\|WP_145873030.1\|5372157_5372673_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP046904.1\|WP_145873029.1\|5371990_5372176_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP046904.1\|WP_145873022.1\|5363496_5364300_-\|ABC-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|223472
NZ_CP046904.1\|WP_145873305.1\|5377835_5379443_+\|DUF692-family-protein	unknown	unknown	gnl\|CDD\|377459
NZ_CP046904.1\|WP_145873036.1\|5376982_5377180_+\|putative-motility-protein	unknown	unknown	gnl\|CDD\|379452
NZ_CP046904.1\|WP_145873023.1\|5364311_5365169_-\|ABC-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|224096
NZ_CP046904.1\|WP_145873019.1\|5359726_5361031_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP046904.1\|WP_145873025.1\|5366545_5367559_-\|SIS-domain-containing-protein	unknown	unknown	gnl\|CDD\|225132
NZ_CP046904.1\|WP_145873024.1\|5365165_5366539_-\|extracellular-solute-binding-protein	unknown	unknown	gnl\|CDD\|270303
NZ_CP046904.1\|WP_145873037.1\|5377517_5377778_+\|DUF2282-domain-containing-protein	unknown	unknown	gnl\|CDD\|370796
NZ_CP046904.1\|WP_145873027.1\|5369418_5370306_-\|ATPase	unknown	unknown	gnl\|CDD\|225518
NZ_CP046904.1\|WP_145873020.1\|5361144_5362164_-\|sn-glycerol-3-phosphate-ABC-transporter-ATP-binding-protein-UgpC	unknown	unknown	gnl\|CDD\|236947
NZ_CP046904.1\|WP_145873021.1\|5362163_5363477_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|341039
NZ_CP046904.1\|WP_145873035.1\|5376380_5376941_+\|molybdopterin-guanine-dinucleotide-biosynthesis-protein-B	unknown	unknown	gnl\|CDD\|367391
NZ_CP046904.1\|WP_145873032.1\|5374245_5374944_+\|GspB-domain-containing-protein	unknown	unknown	gnl\|CDD\|339769
NZ_CP046904.1\|WP_145873031.1\|5372690_5374244_+\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|132060
NZ_CP046904.1\|WP_145873304.1\|5368672_5369350_-\|UTRA-domain-containing-protein	unknown	unknown	gnl\|CDD\|225099
NZ_CP046904.1\|WP_145873034.1\|5375216_5376251_-\|zinc-binding-dehydrogenase	unknown	unknown	gnl\|CDD\|225041
NZ_CP046904.1\|WP_145873026.1\|5367548_5368676_-\|N-acetylglucosamine-6-phosphate-deacetylase	unknown	unknown	gnl\|CDD\|238434

Protein	Function_ID	Function_description	E-value
NZ_CP046904.1\|WP_145873023.1\|5364311_5365169_-\|ABC-transporter-permease-subunit	gnl\|CDD\|224096	COG1175, UgpA, ABC-type sugar transport systems, permease components [Carbohydrate transport and metabolism].	8.03491e-74
NZ_CP046904.1\|WP_145873022.1\|5363496_5364300_-\|ABC-transporter-permease-subunit	gnl\|CDD\|223472	COG0395, UgpE, ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism].	1.45079e-77
NZ_CP046904.1\|WP_145873305.1\|5377835_5379443_+\|DUF692-family-protein	gnl\|CDD\|377459	pfam05114, DUF692, Protein of unknown function (DUF692). This family consists of several uncharacterized bacterial proteins.	1.20792e-128
NZ_CP046904.1\|WP_145873036.1\|5376982_5377180_+\|putative-motility-protein	gnl\|CDD\|379452	pfam14070, YjfB_motility, Putative motility protein. This family of proteins is regulated in B. subtilis by SigD, and is likely to be involved in motility or flagellin production, Proteins in this family are approximately 60 amino acids in length, and contain two highly conserved asparagine residues.	4.16649e-09
NZ_CP046904.1\|WP_145873024.1\|5365165_5366539_-\|extracellular-solute-binding-protein	gnl\|CDD\|270303	cd13585, PBP2_TMBP_like, The periplasmic-binding component of ABC transport systems specific for trehalose/maltose and similar oligosaccharides; possess type 2 periplasmic binding fold. This family includes the periplasmic trehalose/maltose-binding component of an ABC transport system and related proteins from archaea and bacteria. Members of this group belong to the type 2 periplasmic-binding fold superfamily. PBP2 is comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. The majority of PBP2 proteins function in the uptake of small soluble substrates in eubacteria and archaea. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	4.91132e-49
NZ_CP046904.1\|WP_145873025.1\|5366545_5367559_-\|SIS-domain-containing-protein	gnl\|CDD\|225132	COG2222, AgaS, Predicted phosphosugar isomerases [Cell envelope biogenesis, outer membrane].	6.86201e-99
NZ_CP046904.1\|WP_145873032.1\|5374245_5374944_+\|GspB-domain-containing-protein	gnl\|CDD\|339769	pfam16537, T2SSB, Type II secretion system protein B. This is the B protein from some operons of bacterial secretion systems of type II. The exact function of the B protein is not known, though in the case of Vibrio cholerae there is a fusion protein between proteins A and B that includes an AAA domain, a PG_binding domains well as this domain at the C-terminus. Many of the other species have no A or B domain genes in this operon. The type II secretion pathway is conserved in Gram-negative bacteria that are prevalent in bacterial pathogens of plants (Pseudomonas fluorescens, Erwinia or Xanthomonas species), animals (Aeromonas hydrophila) and humans (Klebsiella oxytoca, Pseudomonas aeruginosa, Vibrio cholerae or Legionella pneumophila). Typical type II secretion systems (T2SSs) are encoded by a set of 12 to 16 gsp (general secretion pathway) genes organized into large operons including the conserved 'core' genes denoted C to O and in some bacterial species, as indicated above, extra gsp genes such as gspAB, gspN or gspS. A different nomenclature is used for Pseudomonas T2SSs, so the B gene is referred to as the P protein.	2.21382e-19
NZ_CP046904.1\|WP_145873037.1\|5377517_5377778_+\|DUF2282-domain-containing-protein	gnl\|CDD\|370796	pfam10048, DUF2282, Predicted integral membrane protein (DUF2282). Members of this family of hypothetical bacterial proteins and putative signal peptide proteins have no known function.	1.63894e-14
NZ_CP046904.1\|WP_145873027.1\|5369418_5370306_-\|ATPase	gnl\|CDD\|225518	COG2971, COG2971, Predicted N-acetylglucosamine kinase [Carbohydrate transport and metabolism].	2.35348e-46
NZ_CP046904.1\|WP_145873020.1\|5361144_5362164_-\|sn-glycerol-3-phosphate-ABC-transporter-ATP-binding-protein-UgpC	gnl\|CDD\|236947	PRK11650, ugpC, sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC.	1.18627e-176
NZ_CP046904.1\|WP_145873021.1\|5362163_5363477_-\|MFS-transporter	gnl\|CDD\|341039	cd17486, MFS_AmpG_like, AmpG and similar transporters of the Major Facilitator Superfamily. AmpG acts as an inner membrane permease in the beta-lactamase induction system and in peptidoglycan recycling. It transports meuropeptide from the periplasm into the cytosol in gram-negative bacteria, which is essential for the induction of the ampC encoding beta-lactamase. The AmpG family belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	3.31951e-81
NZ_CP046904.1\|WP_145873035.1\|5376380_5376941_+\|molybdopterin-guanine-dinucleotide-biosynthesis-protein-B	gnl\|CDD\|367391	pfam03205, MobB, Molybdopterin guanine dinucleotide synthesis protein B. This protein contains a P-loop.	1.32573e-66
NZ_CP046904.1\|WP_145873031.1\|5372690_5374244_+\|AAA-family-ATPase	gnl\|CDD\|132060	TIGR03015, pepcterm_ATPase, putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems. [Protein fate, Protein and peptide secretion and trafficking].	9.16939e-86
NZ_CP046904.1\|WP_145873304.1\|5368672_5369350_-\|UTRA-domain-containing-protein	gnl\|CDD\|225099	COG2188, PhnF, Transcriptional regulators [Transcription].	2.48584e-74
NZ_CP046904.1\|WP_145873034.1\|5375216_5376251_-\|zinc-binding-dehydrogenase	gnl\|CDD\|225041	COG2130, COG2130, Putative NADP-dependent oxidoreductases [General function prediction only].	1.55391e-170
NZ_CP046904.1\|WP_145873026.1\|5367548_5368676_-\|N-acetylglucosamine-6-phosphate-deacetylase	gnl\|CDD\|238434	cd00854, NagA, N-acetylglucosamine-6-phosphate deacetylase, NagA, catalyzes the hydrolysis of the N-acetyl group of N-acetyl-glucosamine-6-phosphate (GlcNAc-6-P) to glucosamine 6-phosphate and acetate. This is the first committed step in the biosynthetic pathway to amino-sugar-nucleotides, which is needed for cell wall peptidoglycan and teichoic acid biosynthesis. Deacetylation of N-acetylglucosamine is also important in lipopolysaccharide synthesis and cell wall recycling.	1.68155e-138

>NZ_CP046904.1|WP_145873027.1|5369418_5370306_-|ATPase
MIEYHIGVDGGGTGTRVRFARSDGTPLGEGGAGPSGLMHGIANAWAAVDQAIAQACGNAGIGVPPRDRCAIGLGLAGVHNKEWAAQFVAANPGYAAVALETDASTTLLGAHEGRPGAIIALGTGSVGEIMYADGTRREVGGWGFPAGDEAGGAWIGLAAVNHVQHVIDGRARGSAFADAVIKACGGSGVTDRDSVQSWLAGATQTKFAQIARQVLAHAETDDKARAIMLDAGRHVALIADALDPTGMLPIALCGGLGEVMPPYLPAALRERILAPRGDSASGALRLIRQHLAHQP
>NZ_CP046904.1|WP_145873304.1|5368672_5369350_-|UTRA-domain-containing-protein
MQLANRLSDGIASGDWRANEALPSERVLSDMLRISRVTARKAIDLLCDRGMLTRRRGSGTYITPKLEQPLSRLTSFSEELRQRGFTAGSRWLQREIGIAAPLELLSLGLSPNVPVARLKRLRTADDVVMAIETSTIPATFIPDPQRVTDSLYGYLEAHGTVPMRALQHIRAINADAEQARLANIAPGTAMLHITRVSYLDSGAAVELTHSWCRSDYYEFVAESRR
>NZ_CP046904.1|WP_145873026.1|5367548_5368676_-|N-acetylglucosamine-6-phosphate-deacetylase
MNDASKAHQIQGNILTPAGWIAGTIAFDERIAAIDGAAARPEDNGEDYILPGFIDLHVHGGAGRDVMEGGDAVHRIAAVHARHGTTSILATTMTAPPEDIDKALAAIGGAVRHRGKNEARVLGAHLEGPYINSGKLGAQPNYARAATLAEVQRLEALAPLRVITVAPEIAGHLSLVRALADEGMRVQIGHTLGSYEDGVTALEHGAAGFTHLFNAMSGLHHREPGMVGAALAHAEFAELIPDLLHVHPGAIKAALRAIPRLYCVTDSTSATGMPDGEYMLGRHTVQKCMGGVRLPDGTLAGSTLTLDQALRNLVGLGLDLADASARVSTHAADYLGLDDRGRLRTGAWADLVVLDRDLNLKAVYIEGERCDLNDA
>NZ_CP046904.1|WP_145873025.1|5366545_5367559_-|SIS-domain-containing-protein
MMLNEALSAPDCVAQQLAHDADRYAELGRKLASTPFSTALTVARGSSDHASNYIAYLIMARLGRVVASLPMSLVTLHKSPLITRDTLTIAVSQSGQSPDVVEPIRYFRDGGATTVALVNDIDSPLAQAAEWAMPLRAGKEQSVAATKSFITSLVAGARMVAHWQNDPELKAGLEALPDALRTATQADWSQAIDVLAPARNIMVVGRGISFPVALEASLKFKETSALQAEAFSGAEIKHGPMALIDEGYPLLIFATRGPTQAGLLALADEMRGRGARVLLAAPDDVAQRDLTLPVASTPDLDPIAAIQAFYVMAAQLSAARGLDPDKPRHLSKVTKTN
>NZ_CP046904.1|WP_145873024.1|5365165_5366539_-|extracellular-solute-binding-protein
MKLARLLPALAFVMAGCAAAAAPVKLEFWTFSMKPKFTPYFDGVVRRYEAANPGVRVEWIDFPWDVIQTKLVTRIVAGTPPALVNLNVPWADEFARDGLLQPVDALLGADRPRYLDSALADLTFGGKTYGFPLYSNVAVIAYNKDIFKAAGIPHAPRSLDEQLAFARQIAQRTGKAGLCPALAKIDGLMMQQGLPVIRNGRAVFNSPAHVALIRKLADTYKAGGLLKDSLFAEDNFPAAIDAYKGGRLGMLLAPPTAVKRIELDAKDVYAVTDVAPAPLGPTKIADGGWLIHFGVPAGVPKALLPEVGKFARFLTNDANQLAFAKQASVYPAAAQASRDPFFLAVPPGAGAAEKAVAAGAVSMPYSRTMYVAGVTDYDELRRSLVKAVEAGVTGRQDIQQALDAAVAIWNRKLAKQFPAEAPQTSAKTNGKEPGSDPSGLTPSFGLGLKNELTALQQ
>NZ_CP046904.1|WP_145873023.1|5364311_5365169_-|ABC-transporter-permease-subunit
MKLRPLTPWLFLAPALVLLAVFSFWPVGYGSYLAFTDYSLIRETHWVGLDNFRYILDNEMFVTGLANSVLFLLMVPAVQVGALTLAVLVNNRLPGIRLFRAAYYVPVVTTVSVVGIMWGFMFHEQGTLNYALTVLRLVDAPVGWLSDERIALFAIMFVTMWRGLGWYMVMYLAALQAVPADMQEAAILDGANRWQRFWKITVPALRPTIAVCSILSVLAALKAYQEVDVLTQGGPMNSTFTALYYAYDQGLKHLKLPRALAASFIVSLLCIGIALACLRYLRPRR
>NZ_CP046904.1|WP_145873022.1|5363496_5364300_-|ABC-transporter-permease-subunit
MKKLGHYLLLGAIALLCVFPFWWTLVTALSTQGNVFAFPPTFWPKEPSLANFAEVVRVIPLWDFFRNSVVIAACTVLWKLVLCSLAAYPLARMHFRGRKLVFGIILATLVLPSEVNFLVNFITVTKLSLVDTYTGVILPNVVTAVAILLLKQAFEEVPQDLIDAARVDGASDWTIFTRIMLPLIAPWLATVGILTFVEAWNEYIWPSIVMSKPDEFPLSVGVLYLRGTFGSSTRVIAAGTIITIVPTLAAFLFAQRYFMRGMDGAVK
>NZ_CP046904.1|WP_145873021.1|5362163_5363477_-|MFS-transporter
MDNATQGKSPPFWVPTLYLAQGLPYFAVALIAGLMFKSLGVANEDIAHWTAYIGAAWVFKPLWSPFLELAPSKKAVVVTFQLLGGACLGLVALALHLPSWLAASVAMLGLVAISSATHDIACDGLYIASLSKKQQAQYAGWTGTFFNAGRFISLGGLVILAGQLEKSYGVTTAWTVIFGILAATMISLGLYHGWTLPPARNAGGADHTAAGIARTLKEVIIDYVNKPGIWVSILFIILFRAGEAQVQTIGPLFLRDSLEQGGLGLTTDQVGIVYGTSGTVAFIVGSIAGGYFTSWLGLRRAILPLILAVNLPNLVFWFLSTWHPHDLLIIGAALSTEMFGYGFGFVGIILYMMQVVAPGRYTTAHYAFSTGIMQLGFVLFKWLSGDIQKALGYQHFFLWVLLAAIPVAVLSQFIPMDSRVAEDKEAPAAEPQQAAAH
>NZ_CP046904.1|WP_145873020.1|5361144_5362164_-|sn-glycerol-3-phosphate-ABC-transporter-ATP-binding-protein-UgpC
MAAVSLKNVVKRYDTRHTVIHGIDLDIRDGEFVVFVGPSGCGKSTLLRMIAGLEDISAGELHLDGKLANAIPPAQRQLAMVFQSYALYPHMTVYENMAFALKLAGHKAAEIRAAVERAADVLQIRPLLERRPKELSGGQRQRVAIGRAIVRKPKLFLFDEPLSNLDAGLRGQMRLEIARLHQELKTTMIYVTHDQVEAMTLGERIVVFNGGRIEQVGTPRQLYDDPANLFVAGFLGAPKMNLLPAEVAGLRDREPGVTLGIRPEYVRLATAGESGGVAATVSHVEYLGDQTIVHASVAGTQVAFKQAAEAPPLQAGAAVTLHLPPERCLLFAQDGIRLQ
>NZ_CP046904.1|WP_145873019.1|5359726_5361031_-|hypothetical-protein
MSQFRLARISLLLAAIGLNAATALTGAAYAQDKPAAQAEAPKDVVRPEIFKLVDPAQIKPLMDAKNYAEVKSRLAQADALPNKTPYEEFVLNRMRIAVASATNDNATMTTALEAVINSGKLQPNEQRDFIQALANQYYNNKDYAKAITWFNRYQTETGDTKVRQYIIRAYYFSNDFATAKTELLKDLEAAQKAGTTPKLEELQLLANTGAKTKDQATYLMALENLVRYYPNDDYWLDLLSRTQGKSTYSNRFALDVLRLEKVAVSKMSAEEYTALAELALLAGQPIEAKQALDAGFSNGVLGTGTKAGEHKKLRAQADKQAADDMKNIGSGEASARKSKNGTGLINLGYAYVTLGQYDKGITLIQEGISKGGLQNTEDAKLRLGYSLALAGRKDEAVKTLQTVTGSDGRGDLARYWIMWINRPAGGSAPAQAAQ
>NZ_CP046904.1|WP_145873029.1|5371990_5372176_+|hypothetical-protein
MIKYIGTRKTDQGGMLYVFLINGQEKQVRESALKQYPGCYEALPESAKARILANRKWLQKL
>NZ_CP046904.1|WP_145873030.1|5372157_5372673_+|hypothetical-protein
MAAKAVGTPIVALLFGACLTALSALGAVSGTAAAAVPTHFGDVMGNGLLCRDQTTNRYYYDYMVRWFGQPYKREGGAWWFRTPQAKLWGFDVVEVIVSDETFPHRFVGAVTNTTPEKLAAAITQRDGLRYAKITGSAFPVREAPTGTRIVYADRRSKIYCGKFKPLPPALR
>NZ_CP046904.1|WP_145873031.1|5372690_5374244_+|AAA-family-ATPase
MYTRFFNLTHSPFSIAPDPRYLFMSERHREALAHLLYGVGGGGGFVLLTGEIGAGKTTVCRCFIEQIPAGCRLAYIFNPKLSVEELLQAVCDEFRIALPEGAVSVKGYVDALNRHLLESHARGENNVLVIDEAQNLSAAVLEQLRLLTNLETSERKLLQIILIGQPELRGMLAQPELEQLAQRVIARYHLGSLTAPETAQYIAHRLAVAGLTGPSPFPDAVVGTIHALTHGVPRRINLLCDRALLGAYVENRAQVTRRIVRRAAAEVFGTARPAMAARWPLVAGGVLAGAVLTAAAAWQLAPHAPAAAPAAASVPARPQAAAKGWDNTNADAAVRRLAAQWGVTPEQGDACAAAARHNLRCLAARGTLDELRLLDRPAVLKLRDDPAVPTYAVLTALDDKGATLDVGGKRETIALTALHNRYDGSFTTFWRAPPDWREQVSAGDRGPEVDWLAGRLAQWRGAARPADNEPLAGATLARLREFQAAQQLKADGVAGPKTFIRLSRLGGVREPRLGKEN
>NZ_CP046904.1|WP_145873032.1|5374245_5374944_+|GspB-domain-containing-protein
MSYILEALKKAQAERQLGETPTIHAPALDTQAAQGGTPLKKPFVAALVALGIVSVGLAGLLWRQMTQSPAAPAPAPAPAPAAATSTMPAAAPPVATVPTPVAAPRTAVVPAPAPVVPKPAPEPVAPVAAPPVAAAPVSAPAPAPAPERKRPEPAGEEPVQALRDLPEPIQRAIPPIAMSGYMYSSNPADRLILIDKVLRHEGDEVAPGLVLVRLEPKGAVFMFRGYRYRIPY
>NZ_CP046904.1|WP_145873033.1|5375027_5375213_+|hypothetical-protein
MKLSILHALPLLAAAAPVRAAYMSDAGSAEPGALVIVLACVGLLCLVAGGGGDDGPFRPEP
>NZ_CP046904.1|WP_145873034.1|5375216_5376251_-|zinc-binding-dehydrogenase
MPQQNDVNRRILLAAHPRGLPTPADFRLEETAVPVPGDGQVLLRTLYLSLDPYMRNLMEEIGPGYAPPVPLGAPMVGGTVSRVVQSHREGLRTGDLVLANAGWQDYALSDGSDLTPLGDMPQPSRALGGLGMPAFTAYVGLLDIGQPRAGETVVVAAATGAVGSVVGQIARLKGARVVGIAGGADKCRHAVEVLGFDACIDRNDPAFAQLLADACRDGIDVYFENVGGAVFDAVLPLLNVGARVPVCGFIAHYNDADVPAGPDRLPRVTAAILQKRICMQGFIILDHYATRYDAFRRDMAAWLAAGQVTLREDVVDGLENAPAAFIGLLQGRNFGKLVVLVADR
>NZ_CP046904.1|WP_145873035.1|5376380_5376941_+|molybdopterin-guanine-dinucleotide-biosynthesis-protein-B
MQTGTLTHPGRVIGIVGRSGSGKTTLLEYLVGRLAEQGYKVNVIKHSHHDLELEPPGKDSARLRRAGAAEVMVASPYRFAIVHELRGAPEPGLDEQIARLAPADLTLVEGFKAWPIDKLEIHRGVGDKGPLYRLDPHIVAVASTLPRPDDVAPGVAWLDLDDRDAVLAWLTQKMLAPASSSAPARP
>NZ_CP046904.1|WP_145873036.1|5376982_5377180_+|putative-motility-protein
MDAMSIARLSTTIAETGTREEVSMAVLKKAMDAQASSAAALIDALPPVQSTNLPPHLGNHVNTTA
>NZ_CP046904.1|WP_145873037.1|5377517_5377778_+|DUF2282-domain-containing-protein
MNKHAMIAAALATVCAAGTASADMGGTADKEKCYGVAKAGQNDCAAADGAHGCAAMAKTDNAPAEWKWVAKGSCEKLGGKTTPPAK
>NZ_CP046904.1|WP_145873305.1|5377835_5379443_+|DUF692-family-protein
MRAPHYRDFLDGRPRAGWLEVHTENYLAPGGRDAHLLRRLRRDYPVSLHGVGLGLGSAHGFAPAHLERVRALVADIDPFLVSEHLCWGAIRGRQLHDLLPLVLDDAALDLVASRVQQVQEALGRRILIENVSTYVRWPGDAMSEAGFLAALARRTGCGVLLDVNNLYVNQCNHGEDALAALAALPPGIVGEIHLGGHLVTPAAVIDHHGAAIAAPVWALYEAALARFGAVPTLIEWDTDVPPLDVLLAEADRAAALMQRHAPAMKADLPAPQAGPAPVAETLAAGQAEFAAALLSGAAPAGLPPQRLAIYRGNLTGGWTKALRAAFPVVAELVGDDFFAALAAEYGRGHPTDDPDLNAFGARFAAFLDGFPHVAELPYLPDVARLEWLLHRAYYAADARSLAPGDLAHLSPEAFAASAVTFNPAAVVFASRWAVVPLWLAHQPERGVPFPAEIAQASAALVHRAGWRPDVLALDAANYRALALLEQGGTMGQALDAALDVDQYAGENAGPAFDVAASLAQWLACGAFAGLRTPAG

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Crispr_ID: NZ_CP046904_9

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP046904_9

5486268-5486356

Orphan

Consensus_repeat	Method
GCTCGGCAGTCAAATGGATGAGTTCGTGT	CRISPRCasFinder

1 spacers

csa3

The CRISPR arrays of NZ_CP046904_9

>merge|NZ_CP046904|9|5486268-5486356|CRISPRCasFinder
GCTCGGCAGTCAAATGGATGAGTTCGTGTCCCTGTGGGGTCAGACCCCAGCGGGACACGGGCTCGGCAGTCAAATGGATGAGTTCGTGT

>NZ_CP046904|9|7|5486268-5486356|CRISPRCasFinder
GCTCGGCAGTCAAATGGATGAGTTCGTGT	CCCTGTGGGGTCAGACCCCAGCGGGACACGG
GCTCGGCAGTCAAATGGATGAGTTCGTGT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP046904.1\|WP_145873123.1\|5487615_5489784_+\|alpha-glucuronidase	unknown	unknown	gnl\|CDD\|226187
NZ_CP046904.1\|WP_145873124.1\|5489908_5491039_+\|LacI-family-DNA-binding-transcriptional-regulator	unknown	unknown	gnl\|CDD\|380487
NZ_CP046904.1\|WP_145873116.1\|5474970_5475768_-\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|212491
NZ_CP046904.1\|WP_145873316.1\|5485802_5486213_+\|YeeE/YedE-family-protein	unknown	unknown	gnl\|CDD\|225264
NZ_CP046904.1\|WP_158206816.1\|5484265_5484880_-\|DUF2939-domain-containing-protein	unknown	unknown	gnl\|CDD\|378575
NZ_CP046904.1\|WP_145873126.1\|5492418_5494560_-\|FUSC-family-protein	unknown	unknown	gnl\|CDD\|377393
NZ_CP046904.1\|WP_145873313.1\|5477002_5478364_-\|glucarate-dehydratase	unknown	unknown	gnl\|CDD\|211799
NZ_CP046904.1\|WP_145873118.1\|5479869_5481426_+\|family-43-glycosylhydrolase	unknown	unknown	gnl\|CDD\|350129
NZ_CP046904.1\|WP_145873130.1\|5497749_5499099_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|273326
NZ_CP046904.1\|WP_145873117.1\|5475769_5476969_-\|fumarylacetoacetate-hydrolase-family-protein	unknown	unknown	gnl\|CDD\|226479
NZ_CP046904.1\|WP_145873127.1\|5494597_5495092_-\|MarR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|197670
NZ_CP046904.1\|WP_145873314.1\|5478631_5479873_+\|SGNH/GDSL-hydrolase-family-protein	unknown	unknown	gnl\|CDD\|238868
NZ_CP046904.1\|WP_145873125.1\|5492228_5492429_-\|DUF1656-domain-containing-protein	unknown	unknown	gnl\|CDD\|377931
NZ_CP046904.1\|WP_145873121.1\|5485348_5485780_+\|YeeE/YedE-family-protein	unknown	unknown	gnl\|CDD\|225264
NZ_CP046904.1\|WP_145873122.1\|5486395_5487514_-\|endo-1,4-beta-xylanase	unknown	unknown	gnl\|CDD\|366032
NZ_CP046904.1\|WP_145873129.1\|5497267_5497678_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP046904.1\|WP_145873315.1\|5481444_5484273_+\|glycosyl-hydrolase	unknown	unknown	gnl\|CDD\|379757
NZ_CP046904.1\|WP_145873317.1\|5491302_5492097_-\|biotin/lipoyl-binding-protein	unknown	unknown	gnl\|CDD\|182548
NZ_CP046904.1\|WP_145873120.1\|5485025_5485352_+\|metalloregulator-ArsR/SmtB-family-transcription-factor	csa3	COG0640_csa3_CAS-I-A	gnl\|CDD\|197713
NZ_CP046904.1\|WP_145873128.1\|5495162_5496587_-\|efflux-transporter-outer-membrane-subunit	unknown	unknown	gnl\|CDD\|273830

Protein	Function_ID	Function_description	E-value
NZ_CP046904.1\|WP_145873123.1\|5487615_5489784_+\|alpha-glucuronidase	gnl\|CDD\|226187	COG3661, AguA, Alpha-glucuronidase [Carbohydrate transport and metabolism].	0
NZ_CP046904.1\|WP_145873124.1\|5489908_5491039_+\|LacI-family-DNA-binding-transcriptional-regulator	gnl\|CDD\|380487	cd01545, PBP1_SalR, ligand-binding domain of DNA transcription repressor SalR, a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor SalR, a member of the LacI-GalR family of bacterial transcription regulators. The SalR binds to glucose based compound Salicin which is chemically related to aspirin. The ligand-binding of SalR is structurally homologous to the periplasmic sugar-binding domain of ABC-transporters and both domains contain the type 1 periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type 1 periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.	8.00279e-115
NZ_CP046904.1\|WP_145873116.1\|5474970_5475768_-\|SDR-family-oxidoreductase	gnl\|CDD\|212491	cd05233, SDR_c, classical (c) SDRs. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human prostaglandin dehydrogenase (PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, PGDH numbering) and/or an Asn (Asn-107, PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.	4.06988e-64
NZ_CP046904.1\|WP_145873316.1\|5485802_5486213_+\|YeeE/YedE-family-protein	gnl\|CDD\|225264	COG2391, COG2391, Predicted transporter component [General function prediction only].	1.37987e-09
NZ_CP046904.1\|WP_158206816.1\|5484265_5484880_-\|DUF2939-domain-containing-protein	gnl\|CDD\|378575	pfam11159, DUF2939, Protein of unknown function (DUF2939). This bacterial family of proteins has no known function.	2.82436e-23
NZ_CP046904.1\|WP_145873126.1\|5492418_5494560_-\|FUSC-family-protein	gnl\|CDD\|377393	pfam04632, FUSC, Fusaric acid resistance protein family. This family includes a conserved region found in two proteins associated with fusaric acid resistance, FusC from Burkholderia cepacia and fdt-2 from Klebsiella oxytoca. These proteins are likely to be membrane transporter proteins.	9.76086e-124
NZ_CP046904.1\|WP_145873313.1\|5477002_5478364_-\|glucarate-dehydratase	gnl\|CDD\|211799	TIGR03247, glucar-dehydr, glucarate dehydratase. Glucarate dehydratase converts D-glucarate (and L-idarate, a stereoisomer) to 5-dehydro-4-deoxyglucarate which is subsequently acted on by GarL, tartronate semialdehyde reductase and glycerate kinase (GenProp0716). The E. coli enzyme has been well-characterized.	0
NZ_CP046904.1\|WP_145873118.1\|5479869_5481426_+\|family-43-glycosylhydrolase	gnl\|CDD\|350129	cd18617, GH43_XynB-like, Glycosyl hydrolase family 43, such as Bacteroides ovatus alpha-L-arabinofuranosidase (BoGH43, XynB). This glycosyl hydrolase family 43 (GH43) subgroup includes enzymes that have been characterized to have alpha-L-arabinofuranosidase (EC 3.2.1.55) and beta-1,4-xylosidase (beta-D-xylosidase;xylan 1,4-beta-xylosidase; EC 3.2.1.37) activities. Beta-1,4-xylosidases are part of an array of hemicellulases that are involved in the final breakdown of plant cell-wall whereby they degrade xylan. They hydrolyze beta-1,4 glycosidic bonds between two xylose units in short xylooligosaccharides. These are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. Also included in this subfamily are Bacteroides ovatus alpha-L-arabinofuranosidases, BoGH43A and BoGH43B, both having a two-domain architecture, consisting of an N-terminal 5-bladed beta-propeller domain harboring the catalytic active site, and a C-terminal beta-sandwich domain. However, despite significant functional overlap between these two enzymes, BoGH43A and BoGH43B share just 41% sequence identity. The latter appears to be significantly less active on the same substrates, suggesting that these paralogs may play subtly different roles during the degradation of xyloglucans from different sources, or may function most optimally at different stages in the catabolism of xyloglucan oligosaccharides (XyGOs), for example before or after hydrolysis of certain side-chain moieties. It also includes Phanerochaete chrysosporium BKM-F-1767 Xyl, a bifunctional xylosidase/arabinofuranosidase. A common structural feature of GH43 enzymes is a 5-bladed beta-propeller domain that contains the catalytic acid and catalytic base. A long V-shaped groove, partially enclosed at one end, forms a single extended substrate-binding surface across the face of the propeller.	8.13318e-180
NZ_CP046904.1\|WP_145873117.1\|5475769_5476969_-\|fumarylacetoacetate-hydrolase-family-protein	gnl\|CDD\|226479	COG3970, COG3970, Fumarylacetoacetate (FAA) hydrolase family protein [General function prediction only].	0
NZ_CP046904.1\|WP_145873127.1\|5494597_5495092_-\|MarR-family-transcriptional-regulator	gnl\|CDD\|197670	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein.	2.03279e-18
NZ_CP046904.1\|WP_145873314.1\|5478631_5479873_+\|SGNH/GDSL-hydrolase-family-protein	gnl\|CDD\|238868	cd01830, XynE_like, SGNH_hydrolase subfamily, similar to the putative arylesterase/acylhydrolase from the rumen anaerobe Prevotella bryantii XynE. The P. bryantii XynE gene is located in a xylanase gene cluster. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.	2.30755e-89
NZ_CP046904.1\|WP_145873125.1\|5492228_5492429_-\|DUF1656-domain-containing-protein	gnl\|CDD\|377931	pfam07869, DUF1656, Protein of unknown function (DUF1656). This family contains bacterial proteins, many of which are hypothetical. Some proteins in this family are putative membrane proteins.	4.21108e-11
NZ_CP046904.1\|WP_145873121.1\|5485348_5485780_+\|YeeE/YedE-family-protein	gnl\|CDD\|225264	COG2391, COG2391, Predicted transporter component [General function prediction only].	3.04598e-10
NZ_CP046904.1\|WP_145873122.1\|5486395_5487514_-\|endo-1,4-beta-xylanase	gnl\|CDD\|366032	pfam00331, Glyco_hydro_10, Glycosyl hydrolase family 10.	1.12793e-95
NZ_CP046904.1\|WP_145873130.1\|5497749_5499099_-\|MFS-transporter	gnl\|CDD\|273326	TIGR00893, Probable_glucarate_transporter, D-galactonate transporter. [Transport and binding proteins, Carbohydrates, organic alcohols, and acids].	3.30018e-136
NZ_CP046904.1\|WP_145873315.1\|5481444_5484273_+\|glycosyl-hydrolase	gnl\|CDD\|379757	pfam15979, Glyco_hydro_115, Glycosyl hydrolase family 115. Glyco_hydro_115 is a family of glycoside hydrolases likely to have the activity of xylan a-1,2-glucuronidase, EC:3.2.1.131, or a-(4-O-methyl)-glucuronidase EC:3.2.1.-.	0
NZ_CP046904.1\|WP_145873317.1\|5491302_5492097_-\|biotin/lipoyl-binding-protein	gnl\|CDD\|182548	PRK10559, PRK10559, p-hydroxybenzoic acid efflux pump subunit AaeA.	1.06282e-74
NZ_CP046904.1\|WP_145873120.1\|5485025_5485352_+\|metalloregulator-ArsR/SmtB-family-transcription-factor	gnl\|CDD\|197713	smart00418, HTH_ARSR, helix_turn_helix, Arsenical Resistance Operon Repressor.	3.99716e-20
NZ_CP046904.1\|WP_145873128.1\|5495162_5496587_-\|efflux-transporter-outer-membrane-subunit	gnl\|CDD\|273830	TIGR01845, Outer_membrane_protein_OprM, efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family. Members of this model comprise a subfamily of the Outer Membrane Factor (TCDB 1.B.17) porins. OMF proteins operate in conjunction with a primary transporter of the RND, MFS, ABC, or PET systems, and a MFP (membrane fusion protein) to tranport substrates across membranes. The complex thus formed allows transport (export) of various solutes (heavy metal cations; drugs, oligosaccharides, proteins, etc.) across the two envelopes of the Gram-negative bacterial cell envelope in a single energy-coupled step. Current data suggest that the OMF (and not the MFP) is largely responsible for the formation of both the trans-outer membrane and trans-periplasmic channels. The roles played by the MFP have yet to be determined. [Cellular processes, Detoxification, Transport and binding proteins, Porins].	9.11016e-106

>NZ_CP046904.1|WP_145873316.1|5485802_5486213_+|YeeE/YedE-family-protein
MVNLMALLAGLVFGIGLIVSGMTDPAKVQGFLDVAGTWNPTLAFVMGGAVLVGLAAFAVAGRWERSLLGEPMRLPTATAIDRRLLLGSLAFGVGWGLAGYCPGPALTSLATGAVEPLIFTAAMLAGMGVFELLERR
>NZ_CP046904.1|WP_145873121.1|5485348_5485780_+|YeeE/YedE-family-protein
MTIDWMHFTPIAGLLGGLLIGAAAALFVLFNGRIAGISGIAGGLLRPARGDVGWRVAFLVGLIAAPLLYRLAAPLPPVQIDAGTGTLIVAGLLVGIGTRYGSGCTSGHGVCGLSRRSPRSLAATAAFMLAGFVTVWVVRHVLA
>NZ_CP046904.1|WP_145873120.1|5485025_5485352_+|metalloregulator-ArsR/SmtB-family-transcription-factor
MDQHRNLDLAAMQAAAAQACGLLKTLANPDRLLLLCQLTQGEYCVSDLAAQLGIGQPTLSQQLGVLRNEGLVATRRDGKQIYYRLASDDAAAVMQVLYARFCAPGRER
>NZ_CP046904.1|WP_158206816.1|5484265_5484880_-|DUF2939-domain-containing-protein
MLNQRTLVKVVPVLLLLLAAYWYFSPYLAFHALRDAARRGDVAALAEHVDFPKVRADLKVQLNAMMTDSLRDLGAGGNGVAEAGAAFGAMLGSLMTDKLVDVMITPEYLAYAVRVGKTKNVEDDRSAPPVQAEEDGDDVDEKWLFERAGVNRLVVLRHDEGSGSSMGYVLERTGFAQWKLVGIDLPKPTHCCGAARHAPQPGAT
>NZ_CP046904.1|WP_145873315.1|5481444_5484273_+|glycosyl-hydrolase
MLLVLLLQLGTRAQALGKPPFVAFERGGLDAVELVAKGRAAPIYVDGNDHAGVLRAAGDLQADVARVSGTKPALLKNAPLGIDVVIVGTLGKSALIDGLAQAGMLDVAALRGKWEGYLIRTVTNPLPGVQRALVIAGSDKRGTIYGIYELSEQIGVSPWYWWADVPPARHKAIYANAGTAVADAPVVQYRGIFLNDEAPALTGWAKERYGGYNHRFYTKVFELILRLRGNYLWPAMWDAAFFNDDPENGRLADEYGIVMGTSHHEPMMRAHKEWARYGKGPWDYHRNEGVLKDFWRAGIEKTQGFEKIVTLGMRGDGDEPMSRDANVALLEKIVKDQREIIARQINPDMKQVPQLWALYKEVQEYYEQGMRVPDDVLLLWCDDNWGNIRRLPTPEERKRSGGAGIYYHFDYVGGPRNYKWINVTPLPKVWEQMHLAWQYDATQLWIVNVGDLKPMEVPIEFFLSYAWNPAAWPADRLQEYLRLWATREFGARDAPEIADIVAKYAKYNGRRRPEMLAPDTYSLVNYDEAARVVADYRALEARAERLYAAQPKERRDAFFQLVLHPVKAAAIVNDLYATVGMNRLYAQQGRTATNDMAARARKLFADDAALTRRYHTMGGGKWNHMMAQTHLGYTYWQQPPRNVMPAVSEVQVPPAGELGVAVEGSAGAWPEARDLKLPALDVFERRPRHVELFNRGGKPVPFTVRTSDPWLLIDKPSGTVDKVQRIAVDARWDEVPAGVTTAQLLVTGPNGTAKIDVPLHKPADAARVRGFVETGGVVAMEAEHYARAVAAPGREWLNVPDHGRTLSGMTTLPVDAPALSPQDGMRLEYDVHLFSRGDVKVHVTVAPTLKFQPGQGLRYAVALDDGAPQVVNLHADGSEKWWEKIVADGAAVFTTGHAVDKPGAHVLKVWALDPGVVLQKIVVDAGGMKASYLGPPESPRVR
>NZ_CP046904.1|WP_145873118.1|5479869_5481426_+|family-43-glycosylhydrolase
MKPLLFALGLLAGTAQAADTYRNPVLPGFHADPSICRVGNDYYLATSSFEYFPGVPIFHSKDLVHWKQIGHALTRTSQLPLAGQRYSRGIFAPTLRCNETGFWMITTNVDNGGNFYVHAKDPAGPWSEPVWIKEQQGWIDPSLFFDDDGTVYFTRHDGGEKGGVAQARIDLKTGKLLDAPKRIWNGTGGVWPEGPHLYKINGMYYLMIAEGGTSYNHAITVARSKSPFGPFESNPANPILTHRGKPEQPLQALGHADLVQTPDGKWWMVLLGVRPQQNKHHLGRETMLAPVTWKDGWPVVNDGKPLTVEMSGAGLPPAAPWPAEPVRTGFDAPQLDLRWTFLRGPTDGLYSLTERPGWLRLKGNRWTMDDAATPAFVARRQQHLNMRAAMLVDFAPGGPGQYAGLALRQNENNHYQLRIGGSAAARRVELVTRVKGVTTAVASTALATGPVELQVRAWPDRYEFSYAQQGGKPVVLGSAPTAPLSSEEAGGFTGVFVGMFATGAPADVDWFDYEPLGD
>NZ_CP046904.1|WP_145873314.1|5478631_5479873_+|SGNH/GDSL-hydrolase-family-protein
MLAALALATISTATTAAAADRPGNWHWVASWGTAQMQPEPQNELALEHWQDATLRQIVHVALGGEKLRVRISNVFGTTPLVIDAAGIGLARAPGDPAIDPQSARPLTFGGKGTVMIPAGAEYYSDVVTLPHKAGADLAISLYFNGAPGKQTGHPGSRTTSFVAKGQRTLDATLADPVKTPRWYLLADVEVQAPRDTGAVVAVGDSITDGYGTTTDGNDRWPDALAARIAAGGKPMGVVNVGIGGGRMLRDGLGPNLASRFDRDVIGRAGVTHAVVMIGVNDFGIQHRNGEDIPAARAKLVEDLQVAHRQLVERAHAHGICVIGGTVTPYAGSDYYRPAPANEADRQQLNQWIRTSGVFDAVADFDAALRDPAQPDRLKKEYDNDGLHPSVAGLKAMADAVPLAALRNRCGGAK
>NZ_CP046904.1|WP_145873313.1|5477002_5478364_-|glucarate-dehydratase
MQVIPVAGHDSMLFNLCGAHAPYFIRTLVLLTDSAGNTGIGEVPGGAGINKALENSVGRVVGTEIGRYNRTLNAVREGIAGKGSGEMRGPQTMQHQVTSAAEAAVLKQPHEINLRLENVVTAIEAALLDLLGQHLGVPVCELLGSGQQRDKVPMLAYLFYIGDRTRTDLPYLAGSGNPNDWYHIRHQEAVTVDAIVAQAEATVARYGFRDFKLKGGVMRGEEEIAAVTAIKRRFPDSRVTLDPNGAWSLEEAIRLCKGQGDVLAYAEDPCGPEQGYSGREIMAEFKRATGLPTATNMIATDWRQMAHSHLLNAVDIPLADPHFWTMQGSVRLAQLCQEWGMTWGSHSNNHFDVSLAMFTHAAAAAPGRITAIDTHWIWQEGQERLTKEPLQIKAGEVAVTDRPGLGIEPDLDRIAAAHELYKQVGTGARDDAMAMQYLIPGWTYSPKLPSLGR
>NZ_CP046904.1|WP_145873117.1|5475769_5476969_-|fumarylacetoacetate-hydrolase-family-protein
MKEAPALSLLPADLSQALLVGRVWRAGDVNGPCVVAVRNGEVFDITAHAPTVAELFEREDLVSVVRSAPGESLGPVTQLIETALDANAPATAPRLLAPCDLQALKACGVTFAVSLLERVIEEQAGGDPARAESLRGELLATIGADLSSIKPGSPQAEQLKQEFISRGAWSQYMEVGIGPYAEVFSKSQPMSAVGFGADVGLHPESKWNNPEPEIVLAVNSRGQVVGATLGNDVNLRDIEGRSALLLGKAKDNNGSCAIGPFVRLFDNHFTMDTVRAAEVRMTIEGEDDGFELDGISLMKQISRDPLDLVGQTCGAHHQYPDGFMLFLGTMFSPIKDRDTKGGGFTHHKGDRVTVASPALGALINHVHRSDEIAPWTFGVRALYGNLARRGLLGNTTGGK
>NZ_CP046904.1|WP_145873116.1|5474970_5475768_-|SDR-family-oxidoreductase
MAGDRKKPFEYATYPDLKDKRVVVTGGGTGIGAGIVDAYVQQGSQVVFLDIADEPSRELAASYPNARHQPRFIHCDMTNLDELAKTFADIERDIGAVEILINNAANDHRHSVHEVTPQYWDDSLAVNLRHQFFCAQAVAPGMKKAGSGVILNFGSISWYLALPNLTLYMTAKAAIEGLTRGLARDLGNDGIRVNTVIPGSVKTPKQMALWYTPEGEAQIMASQLLKERIEPEDVAALTLFLSSNQASRCTGRDYFVDAGWYGDGK
>NZ_CP046904.1|WP_145873122.1|5486395_5487514_-|endo-1,4-beta-xylanase
MTTSRRDMLRLLAGTACAAALPFSLAADPEPLKTIAARKGLRFGNALGYRDFKDPAYRALMARECNVIVAENETKWPALEPKPGTLNFAPADEMFAWARKEGMQVRGHTLVWQPEKWLPAWIASHDFGQGSREAERLLREHITTVCKHYGTGIYSYDVVNEAVDPKTGDLRSNAFTQRMGAIEQIDFAFRVAHEQAPHAQLVYNDYMREDAGSAKHRAGVLKMLRELKAKGTPVHAVGLQSHIGSWDDATQKTDPIRDWRAFLDEVTGMGFDLLITEFDVNDRMLPADFTTRDAGVAALARDYLDVTLSYPQVKDFLLWGMADHVSWLQTWDEAPRKDKLPQRCCPWDDQLRAKPLRDAIAASLRAMPQRRA
>NZ_CP046904.1|WP_145873123.1|5487615_5489784_+|alpha-glucuronidase
MMQIWNRALAALALVAAAVLASAVHAAPAHPADEDGYELWLRYRPLPQAHAPRWNTIVFDGAPSATVRAAIDELRRGAQGMTGKDLALGTRVTDGAVVLARAGKLPAGVDGAGLADLGREGYLLKSATVAGKRVTVIAANDDIGLLYGAFGLLRAANTGKPLDRLDERSAPKLQLRVLNHWDNLDRSVERGYAGQSIWNWWELPDVRDRRYVDYARANASLGINGTVLNNVNSKPEILTAPWIAKAAALADVLRPYGIKVYLSARFSTPLELKETKTADPLSPEVAAWWRNKADEIYRAIPDFGGFLVKANSEGQPGPQDYHRTHVDGANMLAAALAPHNGVVMWRAFVYAAEKPDDRAKQAYDEFKPLDGKFARNVLVQVKNGAIDFQPREPFHPLFGAMPATPLMMEFQITKEYLGFAMHMAYLGPLFEETLTSDTMRQPGGLTVAQVLEDAAHGKRPTGMAGVANVGSSRTWSGSHFDQANWYAYGRFAWDPQGSARAFAEEWATQTFARDPKAVQGIVDMMMMSREAVVNYMTPLGLHHLMDTGHHHGPGPWVDNLGRPDWNPTYYHKADRQGIGFDRTARGSNALAQYAPALAARWSDPRTTPPELLLWFHHLPWDYAMPSGRTLWAELVGHYDRGVAQAEELRTRWERMKPFVDARRYDEVRERLDVQVKEAHWWRDASVAYFQSVSGLALPPGARPPARSLDEYKAIRFPYAPGH
>NZ_CP046904.1|WP_145873124.1|5489908_5491039_+|LacI-family-DNA-binding-transcriptional-regulator
MTKIQAKAPSTPGEAGPQPSRRSEKPGVPTMSDVAKLAGVSPMTVSRVMNGDPNVRPATRRKVDEAVAALNYVPNQAARRLAGARAIRIGFLYSNPSAGYLSEFLVGLLNQASIHNVQLVVENCEGGQAWEAQTRRLIDNGVDGIILPPPLCDMRELIEMIALADVPSVTVACGQPDPRVGAVSIDDYHAAYEMTSHLISLGHHRIGFIIGHPNQTASARRLDGYKAAIAEKGADAAPELMVQGMFTYRSGLDAAESLLGLEQRPTAIFASNDDMAAATVAIAHRLGLDVPGDLTVAGFDDTALATTIWPELTTVRQPIAQMAETAVQFLVRQIRAQRDGTIQEPEHIVMDFSLIRRQSDAAPRRRPKLAGKSGEA
>NZ_CP046904.1|WP_145873317.1|5491302_5492097_-|biotin/lipoyl-binding-protein
MESPWTRDARVKADVVTISADVAGIVTEVRVHDNQLVHKGDVLFVVDSERYENALATADAALAAQQVEKTRRGSEAKRRAALDAAVISAESRESAEYAVGTASAQYRAAAAAKHLAELNLHRTVVRAPVTGYVTNLHVYAGDFAAVGAPKLALIDSASFYVMGYFEETRLPLLKAGAPVDVRLMDGVALAGHIESVARGITDRDAATGRELLADVNPTFNWVRLAQRVPVRIAIDKLPQGVELVAGTTCTVTITQHPAAKKKVA
>NZ_CP046904.1|WP_145873125.1|5492228_5492429_-|DUF1656-domain-containing-protein
MPRELSIFGILIPTLLPLFLASALLQGVLDRLLVATGIYRRLWHPALARLALFVCIFGGLTAWLYQ
>NZ_CP046904.1|WP_145873126.1|5492418_5494560_-|FUSC-family-protein
MTPDSAAPPTSRLSHLTGATRRALQGWVAADGERLLFVVRMLAAAYGALWLALRLGLDAPLTAVATTFVLALPSSGMVLEKALYRLLGTVVGCTAALTLVALFPQQAPPLFAGLALWIALCTAGAAMHRNQQSYSFVLAGYTACMIAVPALDNPANVFALAVTRATEVGLGVLVAITVHDVLLPRAHGPQVLRTVQARYERFLGFCRQVLEHRLPPAEAELNHLRFAADIAALESGRAAAFFEAGLGRAQTRQLHAFNEAFMAALTTFYTLHRLLHRMRTGAASPVPALVAPLEALLAQALGGALAQSGSIAGAPIDMLPAALAQQAESARTQLPPGDERLRIDFDTAVELAERFARHLVTFVGIYHGLAQKKRMQVSEPQAYAPKTPPGIVAASGARAAIALLCGATLWYWLAWPQLSNALLMSTIFCALASGSPRPTAMIKQVLTGFVIGAPLTYATVFLLLARADGFPMLMLATAPLLCLAGWLTSDPKRAGIGIGMAMLSSQFLAPQHLVNYDAGVVMNSLFAQTGGVVLAYLIFTVVLPEHTMGNRTHVAAALWREALSACTARLRGQGARLRHRFDNRVRDLLSQLNAAAGPAPSPEARAVVRQGLTLLELGHAVIELRALARATGADAALDPALRAVADYLRVPGEPSCRAAVAALQAAGPAVRTALADDPSSLRAALTALHSIHTSLQDQLPPPTYPLTGVIHAS
>NZ_CP046904.1|WP_145873127.1|5494597_5495092_-|MarR-family-transcriptional-regulator
MSSFDATNKRLKNIRGRNPDFPEDLMRLLRMTYHVQKRIKDLSNAALRKYDLVDASYMVLAVLYGSDNETSTASALGEACMEKPANLTRVCNDLEAQGLVARGNRPGDRRCVMISLTDNGRRLIEQVMPEVWRRTTRAYDGFTPEDIRLQEQLFARQLENLDNT
>NZ_CP046904.1|WP_145873128.1|5495162_5496587_-|efflux-transporter-outer-membrane-subunit
MKRVAIAAAVALLLAGCADMGHIKPASRVLPAADLAAGKAIESAVAQDAHWPDEQWWQAYGDPQLDRLVEAALADNPSLKAAQARVRQAAALAGVVSAAGEPHVDANVSTTRERFPAHGSVPAPLAGNWAWYNTATLNGSYDLDLWGRHHDTLAAALGDARVAAAEAQMARLTLQTAVVRTYLQLWYRHAQQDSVAASLAERRRILDIVRRREAAGLASGIDVATVENTLPAGRREHEAIGESIALLRNQLAALVGKGPGETETIARPAPALDKMPGLPSALPAELVGRRPDIAAMRWRVEAADRRIDAARAAFYPNINLIAFAGLQSFGFSRFLEPSARTLGVTPALTLPVFEGGRLRSALTADTAAYDGAVEQYNATVVQALADVANVVAKIQSCNEQQRLAEHALVTAKRAHDLAEQAYRAGVTDAMNALQAQLLLLGEEDQLLRVESERLDNYASLMAALGGGVRLEDGI
>NZ_CP046904.1|WP_145873129.1|5497267_5497678_+|hypothetical-protein
MSGNSTLDPDNFPELPDRVLGKGHATGALGPSDTSDSGSDVQGGSGLAQQIEENNLAGGTNEDIDQSTAGGTAGPDVGDADLDSDTDAGGTGERATVGRDTTARDGADIGVDHIETIPFTGEDIDPAELDDIERGA
>NZ_CP046904.1|WP_145873130.1|5497749_5499099_-|MFS-transporter
MADAISPVRATRVRWTILAILFIVTTVNYADRATISIAGPELSKQLGLSPVQMGLVFSAFSWSYVLSQLPGGWLLDRFGTRITYFFSIFLWSLFTLAQGWVGFFSGGAAVMMLFALRLIVGAAEAPSFPGNSRLTTSWFPTAERGTAAAIFNSAQYFATVLFAPIMGWLVHTFGWESVFFVMGTLGILIAFAWLKFVHGPRQHPRINAAELQHIQRGGALVDLETTGTAKQQIDTWACLKQLLSSRMLLGIYVGQYCINTLTYFFLTWFPVYLVKERHMTILKAGFIAALPAIAGFLGGVLGGVISDRMIKRGYSTSVARKTPIIGGMLLATTMVLCNYVEQDWVVVAVMALAFFGKGIGALGWAVVGDTSPSQAGGMSGSLFNMFGNVAGITTPIVIGFILEATGSFYGALVFVGANALVTVLCYLFLVGEIRRFEFTRPVVKEVVAA

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Crispr_ID: NZ_CP046904_10

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP046904_10

5737991-5738104

Orphan

Consensus_repeat	Method
CAGCTCGTGTCCCGCTGGGGTCAGACCCCG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP046904_10

>merge|NZ_CP046904|10|5737991-5738104|CRISPRCasFinder
CAGCTCGTGTCCCGCTGGGGTCAGACCCCGACAGGACACGAGCTCAACCAGAACCACGCCGCGCGTGTGTCCGATGCCCCGGCTCAGCTCGTGTCCCGCTGGGGTCTGACCCCG

>NZ_CP046904|10|8|5737991-5738104|CRISPRCasFinder
CAGCTCGTGTCCCGCTGGGGTCAGACCCCG	ACAGGACACGAGCTCAACCAGAACCACGCCGCGCGTGTGTCCGATGCCCCGGCT
CAGCTCGTGTCCCGCTGGGGTCTGACCCCG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP046904.1\|WP_145878905.1\|5738203_5739424_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|225371
NZ_CP046904.1\|WP_145878912.1\|5746260_5747445_+\|DUF418-domain-containing-protein	unknown	unknown	gnl\|CDD\|225193
NZ_CP046904.1\|WP_145879288.1\|5749391_5749964_-\|PEP-CTERM-sorting-domain-containing-protein	unknown	unknown	gnl\|CDD\|260084
NZ_CP046904.1\|WP_145878914.1\|5747441_5748038_-\|DUF1949-domain-containing-protein	unknown	unknown	gnl\|CDD\|224653
NZ_CP046904.1\|WP_145878900.1\|5735926_5736940_-\|zinc-binding-dehydrogenase	unknown	unknown	gnl\|CDD\|176237
NZ_CP046904.1\|WP_145878890.1\|5729573_5730239_+\|response-regulator	unknown	unknown	gnl\|CDD\|182665
NZ_CP046904.1\|WP_158206821.1\|5739692_5742095_+\|PAS-domain-S-box-protein	unknown	unknown	gnl\|CDD\|236645
NZ_CP046904.1\|WP_145878910.1\|5744102_5746124_-\|DUF945-family-protein	unknown	unknown	gnl\|CDD\|377603
NZ_CP046904.1\|WP_145878920.1\|5753204_5753387_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP046904.1\|WP_145879283.1\|5727446_5727824_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP046904.1\|WP_145878898.1\|5734327_5735920_+\|HAMP-domain-containing-protein	unknown	unknown	gnl\|CDD\|185001
NZ_CP046904.1\|WP_145878887.1\|5725976_5727446_-\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|236461
NZ_CP046904.1\|WP_145878894.1\|5731004_5732780_+\|GMC-family-oxidoreductase	unknown	unknown	gnl\|CDD\|225186
NZ_CP046904.1\|WP_145878888.1\|5728137_5729577_+\|HAMP-domain-containing-protein	unknown	unknown	gnl\|CDD\|182539
NZ_CP046904.1\|WP_145878916.1\|5748095_5749280_-\|acyl-CoA-desaturase	unknown	unknown	gnl\|CDD\|224316
NZ_CP046904.1\|WP_145879286.1\|5742249_5744106_+\|RNA-helicase	unknown	unknown	gnl\|CDD\|350671
NZ_CP046904.1\|WP_145878892.1\|5730269_5730992_+\|gluconate-2-dehydrogenase-subunit-3-family-protein	unknown	unknown	gnl\|CDD\|379295
NZ_CP046904.1\|WP_145878896.1\|5732789_5734136_+\|c-type-cytochrome	unknown	unknown	gnl\|CDD\|365823
NZ_CP046904.1\|WP_145878903.1\|5737056_5737974_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|176164
NZ_CP046904.1\|WP_145878918.1\|5750111_5753096_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|372637

Protein	Function_ID	Function_description	E-value
NZ_CP046904.1\|WP_145878905.1\|5738203_5739424_+\|MFS-transporter	gnl\|CDD\|225371	COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism].	5.32272e-79
NZ_CP046904.1\|WP_145878912.1\|5746260_5747445_+\|DUF418-domain-containing-protein	gnl\|CDD\|225193	COG2311, COG2311, Predicted membrane protein [Function unknown].	1.16152e-45
NZ_CP046904.1\|WP_145879288.1\|5749391_5749964_-\|PEP-CTERM-sorting-domain-containing-protein	gnl\|CDD\|260084	cd08547, Type_II_cohesin, Type II cohesin domain, interaction partner of dockerin. Bacterial cohesin domains bind to a complementary protein domain named dockerin, and this interaction is required for the formation of the cellulosome, a cellulose-degrading complex. The cellulosome consists of scaffoldin, a noncatalytic scaffolding polypeptide, that comprises repeating cohesion modules and a single carbohydrate-binding module (CBM). Specific calcium-dependent interactions between cohesins and dockerins appear to be essential for cellulosome assembly. This subfamily represents type II cohesins; their interactions with dockerin mediate attachment of the cellulosome complex to the bacterial cell wall.	9.59292e-18
NZ_CP046904.1\|WP_145878914.1\|5747441_5748038_-\|DUF1949-domain-containing-protein	gnl\|CDD\|224653	COG1739, COG1739, Uncharacterized conserved protein [Function unknown].	2.40492e-55
NZ_CP046904.1\|WP_145878900.1\|5735926_5736940_-\|zinc-binding-dehydrogenase	gnl\|CDD\|176237	cd08276, MDR7, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines.	7.87373e-161
NZ_CP046904.1\|WP_145878890.1\|5729573_5730239_+\|response-regulator	gnl\|CDD\|182665	PRK10710, PRK10710, DNA-binding transcriptional regulator BaeR; Provisional.	5.3797e-87
NZ_CP046904.1\|WP_145878910.1\|5744102_5746124_-\|DUF945-family-protein	gnl\|CDD\|377603	pfam06097, DUF945, Bacterial protein of unknown function (DUF945). This family consists of several hypothetical bacterial proteins of unknown function.	7.55302e-35
NZ_CP046904.1\|WP_158206821.1\|5739692_5742095_+\|PAS-domain-S-box-protein	gnl\|CDD\|236645	PRK10060, PRK10060, cyclic di-GMP phosphodiesterase.	8.25053e-88
NZ_CP046904.1\|WP_145878898.1\|5734327_5735920_+\|HAMP-domain-containing-protein	gnl\|CDD\|185001	PRK15041, PRK15041, methyl-accepting chemotaxis protein.	1.70644e-121
NZ_CP046904.1\|WP_145878887.1\|5725976_5727446_-\|AAA-family-ATPase	gnl\|CDD\|236461	PRK09302, PRK09302, circadian clock protein KaiC; Reviewed.	1.24397e-56
NZ_CP046904.1\|WP_145878894.1\|5731004_5732780_+\|GMC-family-oxidoreductase	gnl\|CDD\|225186	COG2303, BetA, Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism].	1.10092e-68
NZ_CP046904.1\|WP_145878888.1\|5728137_5729577_+\|HAMP-domain-containing-protein	gnl\|CDD\|182539	PRK10549, PRK10549, two-component system sensor histidine kinase BaeS.	1.09975e-115
NZ_CP046904.1\|WP_145878916.1\|5748095_5749280_-\|acyl-CoA-desaturase	gnl\|CDD\|224316	COG1398, OLE1, Fatty-acid desaturase [Lipid metabolism].	3.94431e-88
NZ_CP046904.1\|WP_145879286.1\|5742249_5744106_+\|RNA-helicase	gnl\|CDD\|350671	cd17913, DEXQc_Suv3, DEXQ-box helicase domain of Suv3. Suppressor of var1 3-like protein (Suv3) is a DNA/RNA unwinding enzyme belonging to the class of DexH-box helicases. It localizes predominantly in the mitochondria, where it forms an RNA-degrading complex called mitochondrial degradosome (mtEXO) with exonuclease PNP (polynucleotide phosphorylase), that degrades 3' overhang double-stranded RNA with a 3'-to-5' directionality in an ATP-dependent manner. Suv3 plays a role in the RNA surveillance system in mitochondria; it regulates the stability of mature mRNAs, the removal of aberrantly formed mRNAs and the rapid degradation of non coding processing intermediates. It also confers salinity and drought stress tolerance by maintaining both photosynthesis and antioxidant machinery, probably via an increase in plant hormone levels such as gibberellic acid (GA3), the cytokinin zeatin (Z), and indole-3-acetic acid (IAA). Suv3 is a member of the DEAD-like helicase superfamily, a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.	2.0242e-60
NZ_CP046904.1\|WP_145878892.1\|5730269_5730992_+\|gluconate-2-dehydrogenase-subunit-3-family-protein	gnl\|CDD\|379295	pfam13618, Gluconate_2-dh3, Gluconate 2-dehydrogenase subunit 3. This family corresponds to subunit 3 of the Gluconate 2-dehydrogenase enzyme that catalyzes the conversion of gluconate to 2-dehydro-D-gluconate EC:1.1.99.3.	3.92896e-31
NZ_CP046904.1\|WP_145878896.1\|5732789_5734136_+\|c-type-cytochrome	gnl\|CDD\|365823	pfam00034, Cytochrom_C, Cytochrome c. The Pfam entry does not include all Prosite members. The cytochrome 556 and cytochrome c' families are not included. All these are now in a new clan together. The C-terminus of DUF989, pfam06181, has now been merged into this family.	6.49762e-12
NZ_CP046904.1\|WP_145878903.1\|5737056_5737974_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|176164	cd08475, PBP2_CrgA_like_6, The C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator CrgA-like, contains the type 2 periplasmic binding fold. This CD represents the substrate binding domain of an uncharacterized LysR-type transcriptional regulator (LTTR) CrgA-like 6. The LTTRs are acting as both auto-repressors and activators of target promoters, controlling operons involved in a wide variety of cellular processes such as amino acid biosynthesis, CO2 fixation, antibiotic resistance, degradation of aromatic compounds, nodule formation of nitrogen-fixing bacteria, and synthesis of virulence factors, to name a few. In contrast to the tetrameric form of other LTTRs, CrgA from Neisseria meningitides assembles into an octameric ring, which can bind up to four 63-bp DNA oligonucleotides. Phylogenetic cluster analysis showed that the CrgA-like regulators form a subclass of the LTTRs that function as octamers. The CrgA is an auto-repressor of its own gene and activates the expression of the mdaB gene which coding for an NADPH-quinone reductase and that its action is increased by MBL (alpha-methylene-gamma-butyrolactone), an inducer of NADPH-quinone oxidoreductase. The structural topology of this substrate-binding domain is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	9.5945e-90
NZ_CP046904.1\|WP_145878918.1\|5750111_5753096_-\|hypothetical-protein	gnl\|CDD\|372637	pfam13574, Reprolysin_2, Metallo-peptidase family M12B Reprolysin-like. This zinc-binding metallo-peptidase has the characteristic binding motif HExxGHxxGxxH of Reprolysin-like peptidases of family M12B.	9.78557e-24

>NZ_CP046904.1|WP_145878903.1|5737056_5737974_+|LysR-family-transcriptional-regulator
MDNLEGVGVFVEVATAGSFAQAAERLRVTRSAVGKAVARLEARLGVRLFYRTTRRLALTDDGQAYYESAQRALAELRAVEAAFDDGRHEPAGRVRISVPVLFGRHCVAPALVELAQRHPALDIECVFSDRVLDLPEEGFDLAVRIGTLPDSATLVARKLGMQRMCLCGAPSYLARHGVPADADALLSHAGVVYAHNGRPVPWQLYGPDGTVREVTPRSQLRFDDLQAIADAVLAGAGLAWMPCWLVGPAVLAGRLAIVMEPEQVVANDIHLVWPHASRIPLRVRAAIDALLESIPPLLAHRDVRC
>NZ_CP046904.1|WP_145878900.1|5735926_5736940_-|zinc-binding-dehydrogenase
MKAYQLQPGDGIAGLRRIGIHTPTPLPHQVLVRTRAAALNYRDLMFARGNYGGHGAAALVPLGDGAGDVVAVGAHVTRFKPGDRVIHAYFPGWADGAPTPAKTAASFGTHIDGTLAEAFVADEAALAHMPAHMDYVQAATLSCAGTTAWNALFVAGRLKPGASVLLLGTGGVSVIALQLARAAGLAAIVTSSSDEKLERARELGAAGTINYRATPEWQEEVLRLTGGRGVDLTVETGGEGTLARSIAATAMGGTVAVIGITSGLGGAQIDPISLIAGAKRLSGIFVGSRVMLEDLVRFTEAARIKPVVDRVFTFDQAAEAYTYVDQGRHFGKVVVTV
>NZ_CP046904.1|WP_145878898.1|5734327_5735920_+|HAMP-domain-containing-protein
MIKRLTIRLRLIACMAFLGILLVVIGGVGINGIRTVNAALQDVYQKQMASALKLAEAKNFLNRSRFVIDRGVFHPEAPDLEKTLGRADGFIKDADKSWREYLAMPMDDDERALTADLDAKRTAYIDNGLRGLMDAIRSKDTARIDELAMKKLTPMFSTFDAASNKLEQYQMKSAAEHFAESQSFYDGVLKGFTAAIAIGLIVIVGATIVLLRAIMNPLDEALGHFDAIAAGNLADRIAVTSHDEMGNLLAGLSKMQQQLAATVQSVRHGSSAIAVASHEISAGNADLSRRTEQQAASLEETASSLEELTSTVRQNADNARQANQLALTASSVAGKGGQLVSQVVDTMDTINTSSKRIVDIIAVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRNLAQRSAAAAKEIKELITASVNQVEAGTQLVGKAGSTMDEIVTSVEKVTTIMSDIMLAGEEQSAGIDQINQAIAQMDEATQQNAALVEEAAAAAESMRQQAAQLEELVSTFRLEGAPSSGRSSNRALALY
>NZ_CP046904.1|WP_145878896.1|5732789_5734136_+|c-type-cytochrome
MKTTTKRALAIVLGLAVVAVGGAALVAALPTDTRAIGPGAETQPTDQLIAAGRYIATASDCIACHTAPGGKPFAGGLKMATPIGALYSSNITPDKKTGIGNFSLNDFDRAVRHGITPAGGTLYPAMPYPSYAKMTDADLRALYAYFMQGVAPVESANRTADIRWPLSMRWPLALWRKAFAPPVATIPVDRYQSAALARGAYLVQSLGHCGACHTPRATTMQELAQDESSPHYLAGGAVIDGWLAVNLRGDAADGLGRWSERDIADTLAKARNAHAAVVGTPMADVVAQSTQHLTDADRQAMATYLKSLPAVGQGKATFAASEATARALRAGNEENRGAQLYVDNCAACHRTDAKSNAVTFPALAGNPSVLADDPASLIRLVLAGSALPTTGKAPSNLGMPGFAWRLSDEETAQLVTFVRTSWGNQAPAATASAVAKVRKQLDAEHASR
>NZ_CP046904.1|WP_145878894.1|5731004_5732780_+|GMC-family-oxidoreductase
MTIVKNKVDAVIVGAGWTGAIMAKELTDAGLSVVVLERGPDRDTQPDFSYPRVVDELEGSVHRKYLQALSKETVTIRHGIADTAVPYRQMGSFKPGTGVGGAGSHWSGCHFRALPEDFKVRSNLEQRYGKKFIPSNMTVQDFPITYEDLEPHFDHFEYVCGTSGKAGVIDGKYIEGGNPFEGSRSRDYALGPNPNYLGAEWFYKAAKEMGYHPYPIPASNASAPYTNPYGCQMGPCNFCGFCSDYGCLNYSKASPNACIFPAIRGRENFELRTLAQVLKVNLTADNKKATGVTYLDAQGRETEQPADLVLLCAFSLFNVHMMLVSGIGTPYDPVTKTGTVGRNYSYQNLNRVVLFFDESVQANPFIGIGGGGATFDDLNGNRNDSAKSGYIGGGIIWARQPGAGPVRGIQTAPGVPNWGSAWKQGVKEAFRHSFYYEVQGSCMSYDDAYLDLDPTYKDAFGRPLLRMTFDWHDNEIKASQYLVEKATDMCKVLGPKAMKGDAKKDGAHYNVTQYQSTHTCGGAIMGSDPKTSALNRYLQSWDVSNVFAPGANAFPQNNGYNPTGMVGALAYWCATAIREQYLKNPGPLVHA
>NZ_CP046904.1|WP_145878892.1|5730269_5730992_+|gluconate-2-dehydrogenase-subunit-3-family-protein
MSDDKQPTSRRSLIKSLVFLPLGAAAGAGAVRALDASAAGPAPEGQPEAYTPTFFTSAEWRFVHAACDRLIPHDEHGPGAVEMNVPRFLDKHMQTPYAAGDIWYMQGPFVKAAPEFGYQGKLALRDIVRVGIKAFDAHVGREFAGKAFADLDGKQQDALLQAAEKGDLKFDDISAKLFFSTLLAEVRNGYFADPRHGGNQNMGAWKMIGYPGMRADYLDWVEVRDKPYPIGPVDLAGRRG
>NZ_CP046904.1|WP_145878890.1|5729573_5730239_+|response-regulator
MSAAQHVLVVEDELRLARLLVSYLEAAGYRATALHDGRRVQSLVAAGGVDLVLLDWMLPGVDGMTLCRALRAGGDLPVIMMTARAAEEDRLEGLDSGADDYICKPFSPREVVARVRAVLRRRPPQATPRAGLHIDALALRAFVDGRELALTPVEFRLLKVLRDSPGVARTRDELRANVYADHRVVSDRTIDAHVKNLRRKLGEAGLPDAIAAVYGIGYRWL
>NZ_CP046904.1|WP_145878888.1|5728137_5729577_+|HAMP-domain-containing-protein
MLILGIRIGITTRLFCALLVVSVLTALGVGLGTRWSFQRGFQGYLNEVEARRMEAMAFELARAYREHGNWDFIRGNQGAWERYTGAIGRERATAPLAGDTSIHHEGGDSIYYAVPGRGPRRLALYDMDGAHLAGNHQTEGDMPLRYQRVLVDGRQVATLVGAPLRGLSEEAEQGFLVQQQRDSALIGLATLALAALAAMLLARSFVAPTRRLTVAAAKVAAGDYGVRVPDGGRDELATLARNFNSMTATLESNEALRRHFMADISHELRTPLAVLQAQLEAMEDGIEPMNQRSVTLLTEEVATLSRLIEDMRQITLTDAGVFDYHIAPLDLAQLVGAELAKWRDPLAVARTAVYAELPEHLTTRGDTIRLRQLLRNLFTNLLRHAEGATRVALLLKREDGHAVLTFADDGRGVPHEALTMLFERFWRGDSSRSRGTGGSGLGLAICRSIAEAHGGTIAAGATLGGGLTITLRLPLEEPA
>NZ_CP046904.1|WP_145879283.1|5727446_5727824_-|hypothetical-protein
MLAQPGGGDPAERHLLPWRSLAVHLSPLIGESGFGALYGRTGRLLAQQYGWLTVSPSSQTLDALFRTLKEDLARAEPAQAALANEALLTTFTRLLSDLIGTALTTRLIDSAWHSAQAQNNAGEQK
>NZ_CP046904.1|WP_145878887.1|5725976_5727446_-|AAA-family-ATPase
MTDKVSLGLLETGVPGLDTLLGGGLGEYSFNLIAGTPGSGKTTLAHQMMFSLASPERRALFFTVLGEPPLKMLRYQQQYSFFELDKVGSAIRYVNLADDLKNGDFSGVLERIMREVEAFSPSLVFVDSFRSVAQTAKSGSEGIADLQHFIQELGTRMTSWQATTFLIGEYAHVDAEANPIMTVADGVLSLSQSQQDNSIVRKIRIVKMRGQAHMAGMHTFRISGDGVRIFPRLLPPLALDRIPGQPVDRTPRRISSGVPSLDVLLHGGIPEGHSILVAGPSGSGKTILGTQFLAEGARQGEKGVAAYFEKGTARLRNAALAELVQAGHVHIVESRALDLTADELLQELLDTIVATGAKRVVLDSLSEVLLYLAPEFRREFRLTVFRILSSLAKLGVTAIVTLGMEDRFTELRFSEAEISFLTDGIIVTRYVEMDGELTKVIGVVKLRGCSHSTALRTFQITDHGIEIDGERVRFDGMLSGHPSPQQDGG
>NZ_CP046904.1|WP_145878905.1|5738203_5739424_+|MFS-transporter
MQEAALPDSQIPTIIAPRGAGLAELALALGGLAIGTGEFASMSILPLVARDLGTTLPAMGHMISAYALGVVVGAPLIAIFLARMPRRMMLMCLMLMYAVGNFLGALAPTPALLILARFVAGIPHGAYFGVAALVAAGLVTADKRAQAVGRVMLGLTVANIFGVPLATLLGEMLGWRSAFGIVGGLALLTVAMVALCLPHIPAGNASVRGELGVFRRLQVWLTLLMVGIGFGGMFAMYTYVTPTLQQITHATPLQISVLLALIGVGMTVGSLAGGWFADRAQTATIFSVLVWEALVLAAFAWTSSNLWLAGLNLFLIGTGIAVVPAVQTRLMDVAGDAQTVAAALNHSAFNVANALGAWAGGMAIAAGYGLTSTALVGAILPLGGIAVLALSIAVDRGSARAALSAA
>NZ_CP046904.1|WP_158206821.1|5739692_5742095_+|PAS-domain-S-box-protein
MREYALFILDTAGTIRTWNAGAERLKGYGAADILGQHFSIFYTPEERTANRPAEALALAARDGSFSEEGIRVRQDGSCYWASIVLSALYDEQGTLQGFVKLVRDISPRKISEAAMRESEARYRALFEHSNDAVLLMEPDGTIVSANPAALRLFGYSEREMLTLRREQVIDMADPRVAPACEARAETGEASAEITFIRRGGERFEGSVSSSLFRDGTGGMMASMMIQDITRRKAEQEALRRSEERFRATFEHAPLGIAECALDGRFLNANPKLLDMLGYSADEFRHLSVHAITHPADGEETLALYRRLAAGEVDAHVMENRFLRHDRSFLWVKVTTALRREGNVPLHTVAIVEDITERKKAQEDLRRAMEQSYHLANHDPLTGLANRAQFPDRLRDALAYARRDDHMVALHLLDLDRFKLINDCLGHHVGDVLLRQVAERIRTHIRASDLAARLGGDEFVVIQTHLADPTAASALAEKLVETLGRPYAIEGQEVHSGASLGIAVYPLDAQDGEQLMKLADLALYEAKGRGRYNFQRYRDEMGAAARDAQRSERELLRALHEEEFCLHYQPQFDIRSGRIAGVEALIRWHHPERGLLTAGQFIDDAEQAGLMLPIGEWTLRTACRQHREWSGGGFAAPLTVNVSARQFKHPRFLPVLRRLVQENRACPALQLEVRESLVLDPKFPDKYLAQLKELGVALALDAFGTELTALSSLSRYPVDVVKPCGTLIEDAGTKEAESSVLAAIVGIAHGLGMAVCAQGVETRQAWESARRHGCDTAQGNLLSEPVDAERMGELIAAEHAG
>NZ_CP046904.1|WP_145879286.1|5742249_5744106_+|RNA-helicase
MEGRVFLRIAGSVDHAGLHVPYALVPAQGVLAKPSKWRKLDAEARAALIRERSNERALRELHGAAAGFVRELAGECDEYGLAPMDFLHTLADLQTSEPATVVFDRIRQRLGHAVERQREERHAERTRQSINLAEYPASFEVARRLPRKFIALLGPTNSGKTHKAMEALAKAASGVYLAPLRLLALENYERLLEVTQHGKPLAVSLVTGEERRLAEGATHVASTVEMLDTRTPVDVAVIDEIQMLADRDRGAAWTAAVCGAPARTVYLVGAPEARRAVEALAERLECQLEVHVLKRKGPLAMEPGPVRKVKNLRPGDALIAFSRRDVLMWRDMVAEMGHSVATVYGNLSPEVRRAQAQRFRDGEADIVVGTDAIAMGLNMPIQRIVMTSTIKFNGYEEEEIPAALARQIAGRAGRYGIHEEGLVAGYDADSHEVMRSLLKEKPVPLNTTGFAVAPTLEHLHRIAAVTGETSLAKLLKRFIHNIDVPDGFFYPRITEDQMERATWLDTLPLSVADKFTLSLVPVSTKVVALQNAWEHWCVALSKQRTTRLQEGTSLYYMTLQEVEDTCRMYSAYAWLGYRLPDYFPDIELAQELSRRASERVDSMLQDQNTAARRRHRRR
>NZ_CP046904.1|WP_145878910.1|5744102_5746124_-|DUF945-family-protein
MKVPSLLAMLAAATFGSAAAAEPPAAATPTDPVALAAEAARDAADAAETARRAHAEDARLRAEGQRALQGLSLQLQRHVDPLAKQQAPTTDQLDAMERVFKSRQPLRVELLSKRGAPKRQRLTLPAGAYTGIDGTTTWQPLTWQVNHSADARRMDSTFVWPGAVHAQAKGTLTVQDAAGKSQQRRGTDGLWFGRTHFTAENVRFEAPNSPPADFIHLRGRSTTSPAGKSMHQDYDMLVERLKVADFTLEQLHMAFQLRNLDRAAVARIAQTEAGDKDLVYAQLKQLALSGAELRIDDISARYKGHTASVHGTVALPGVTNDDFSSVAKLTRKLKFRFDAKVPLPLVREIATAFAARNTAKGAPTAEQLYAGIVGKAVGDGWARVEADALLTSIEWRDGSLVINGKPVELPQAAKAALVVVPPADPQPPQRLSMATRPADSLLAHALNGHPMALAAQCRREVERGADATDTAFDWCRKAADKDMPEAFGQLAVLYDRTGDKAQAEAWRRRAASAEPELPRDELEHGGSEVLRQRAGEWDISEFRFDPRFARDLLVSMETPRKHDKWVPVLSLCVAAEAPSDRVCLAMSRYGDDTQLAVTKRVQSQLVDKPQQRLDAEAALGMSHHVRVYVRDDVVYFELNGNRVIAEPVGFPVEVIELGCSTADCRFSFIPPAP
>NZ_CP046904.1|WP_145878912.1|5746260_5747445_+|DUF418-domain-containing-protein
MNSSSRLELVDALRGFAIVSIMLLHNLEHFDLYHLPDGQPGWLVALDKGIWETAFFLFGGKSYLIFALLFGLTFQIQFARRAAQGEDFRPRFAWRMVLLLGFGLVNSLFYQGDILSYYAVMAFALLPVARLGDRAVLAIACALLLQPYGWYEVLQALPQPDAKLADPASWTYFGRGNAYLANGTLLETWYGNLTNGKTAAVLWSWENGRMFQIPALFMLGMLAGRAGVFALSVTNRAWWRRTLAVAALCFAALYAAKLGIESQVAGEALRRPLVMIVKSWANFALMGVIVAGFALLYQQGVVTRALQAFAPLGRMSLTSYLMQSVVGTTLYYGFGLGLYRYTGASVCLLIGIALALLQGLFSAWWLKRHKQGPLETLWHRATWVGAGRTQAAAV
>NZ_CP046904.1|WP_145878914.1|5747441_5748038_-|DUF1949-domain-containing-protein
MPHTLAAPCSAELLIKKSRFIACVQPMTDRAAAQAVVARQKAEHPGAAHVCWALLAGGQSAAVDDGEPSGTAGRPMLDVLRHQDLEGVLATVVRYFGGVKLGAGGLVRAYTDSVAQALLKAERIAIVKARTLRCAVPYALEGLLRRELDAAGATLGDVAHGDDVVCEFTLPETAAPALVARLNEAGNGRVRWIDPEEA
>NZ_CP046904.1|WP_145878916.1|5748095_5749280_-|acyl-CoA-desaturase
MDESVILAFLSHGVLDWSAWQIVACTLALTHVTIAAVTIYLHRCQAHRALTLHPLASHFFRFWLWLTTGMVTAEWVAVHRKHHARCEADGDPHSPAVFGIRRVLLEGSELYRIEAANAATVAQYGTGTPSDWIERHVYGRWTWQGVGLMLVIDVVLFGVVGLTVWAVQMLWIPITAAGVVNGLGHWWGYRNYDGPHAATNIGPLGLLIGGEELHNNHHTYPTSAKLSARWFEFDVGWLYIRLLQACRLAQVTRVVPRARRAVPKAVADLHTLQAIIANRHEVMARYRRMLCRAFRAARSDMGADKRSLAQVYRLLRRDPAFVTGEQAASLAHSLRQHSALWEMQQLRAELAELWQRKHAQPEELLAHLRQWCEQAERSGITILRDFATRLRSYA
>NZ_CP046904.1|WP_145879288.1|5749391_5749964_-|PEP-CTERM-sorting-domain-containing-protein
MREWKKYLGAALLSFAAAQAGAATLTATASPNPANVGQSVAVAVQIIDVPDLFTYQFSISFDPTVLQATSVALGDILVTGGTSFGAPGAIDNSAGTISFFYNTLIGPISGVTGSGTLANITFQAVGAGSSTFGFTDIMLLNSGGEDIAFGVANPRVDVSAVPEPATYAMLGVGLIGVAALRRRQLAATRS
>NZ_CP046904.1|WP_145878918.1|5750111_5753096_-|hypothetical-protein
MRNKPSIPPYHGGLTGPGVKSSLALCIALAFAAAPIAHAAQATVQPVVNQAAAPYWQDVPVASESLTVGGAKRPALKLKRFHGAALDKGGMKALTAGAPAERPDGSIGNALTIALPHPDGGYQRFALVESSIMEPGLAAQHPDIKTYKGKGIDDPSATLRMDITPLGLHASVRSPNGGWYVDPYYRLDDSLYASYHARDLTNQHGPLVESAAGEARLMLSRGFYQEGDNVEVRGSGFAPGASVTVTVRSEGDGTALQSAVATADSKGTVTVTLPAGSAGAGAFEVVASDGRAESTASYHVVDAGVAANAATGTQLRTYRLALVTDPAYATYFGGAANVTAAKVTLINRVTQIYEDETSIRLVLIDGNDALNLNTAAQMTGTNGPCGGAACFTADQAESCGSPTLSRNRIVTGLLVGASKFDIGHIALGTPGGGVASLGVVGGNAKAQGCTGVETPEGDLFAVDYVAHEMGHQFSGNHTFNGTQGSCGGNGNDDTSIEPGSGSSIMAYAGICRTDNLQAHSDPYWSQRSFDEINAYVSGPEASLNEVQAAALRNFASTGQQFQVSWNGNLSAPIVRGTNYTAAGIKAAIQGIAGWPAGGVVSITGVSNNGFTATFGGTLAGTNVAQLQLVNFTAGSSGFAGEIVAGGRTNRGGALSATGNAAPVVTAPAGYTIPVRTPFALTGDASDADGDPVTYMWEQNDRGTGSTLLSNAKTNGPLFRQFGKRALVSATDTLEYDSPGENHTTADPTRVFPDLDQVLANNTNAQTGACPTPAATPTAADIDCYSEYLPTAAYVGVPGTNANPASLNFRLTARDGRGGVASADTKLVLAPNAGPFLVTAPNTAVSLEAGTAQTVTWSVANTNVAPVSAANVKITLSADGGKTWPYVLADSTPNDGSASVTLPAIATTTARIKVEAVGNVFFDVSNANFTIRLTGDVNGDGQVDCGDLGLIKALYAKRTGQIGFDGRADVVQDGVIDARDLSYVARRVAAGTACN
>NZ_CP046904.1|WP_145878920.1|5753204_5753387_+|hypothetical-protein
MHALLLSCCAADPMPASVVRENPVPPSGAAVAFTAADRLSELDHAIAYLLLDTSLIFIML

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Crispr_ID: NZ_CP046904_11

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP046904_11

6509804-6509906

Orphan

Consensus_repeat	Method
GTGCCAGGCACCAGGGACACAAGCTCATCA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP046904_11

>merge|NZ_CP046904|11|6509804-6509906|CRISPRCasFinder
GTGCCAGGCACCAGGGACACAAGCTCATCATATCGGTGGCGGTTGAAGCAATGGCTGAGCCCGTGTCCCCTTAGTGCCAGGCACCAGGGACACAAGCTCATCA

>NZ_CP046904|11|9|6509804-6509906|CRISPRCasFinder
GTGCCAGGCACCAGGGACACAAGCTCATCA	TATCGGTGGCGGTTGAAGCAATGGCTGAGCCCGTGTCCCCTTA
GTGCCAGGCACCAGGGACACAAGCTCATCA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP046904.1\|WP_145879854.1\|6517838_6518354_+\|urease-accessory-protein-UreE	unknown	unknown	gnl\|CDD\|237323
NZ_CP046904.1\|WP_145879837.1\|6511636_6513400_+\|DUF885-family-protein	unknown	unknown	gnl\|CDD\|227142
NZ_CP046904.1\|WP_145879827.1\|6503726_6505151_-\|phosphohydrolase	unknown	unknown	gnl\|CDD\|225116
NZ_CP046904.1\|WP_145879818.1\|6498748_6499105_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|173412
NZ_CP046904.1\|WP_145879833.1\|6508667_6509666_-\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|235853
NZ_CP046904.1\|WP_145879829.1\|6506873_6507569_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP046904.1\|WP_145879831.1\|6507580_6508657_-\|Ku-protein	unknown	unknown	gnl\|CDD\|238408
NZ_CP046904.1\|WP_145879847.1\|6515465_6515768_+\|urease-subunit-gamma	unknown	unknown	gnl\|CDD\|183913
NZ_CP046904.1\|WP_145879835.1\|6509984_6511640_+\|sulfate-permease	unknown	unknown	gnl\|CDD\|273284
NZ_CP046904.1\|WP_145879850.1\|6515797_6516115_+\|urease-subunit-beta	unknown	unknown	gnl\|CDD\|237303
NZ_CP046904.1\|WP_145879843.1\|6514239_6514470_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP046904.1\|WP_145880224.1\|6505194_6505632_-\|carboxymuconolactone-decarboxylase-family-protein	unknown	unknown	gnl\|CDD\|225039
NZ_CP046904.1\|WP_145879820.1\|6499279_6501946_+\|DNA-ligase-D	unknown	unknown	gnl\|CDD\|235658
NZ_CP046904.1\|WP_145880228.1\|6518353_6519043_+\|urease-accessory-protein-UreF	unknown	unknown	gnl\|CDD\|223900
NZ_CP046904.1\|WP_145879825.1\|6502823_6503639_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP046904.1\|WP_145880226.1\|6505868_6506621_+\|alpha/beta-fold-hydrolase	unknown	unknown	gnl\|CDD\|378924
NZ_CP046904.1\|WP_145879845.1\|6514601_6515456_+\|urease-accessory-protein-UreD	unknown	unknown	gnl\|CDD\|223899
NZ_CP046904.1\|WP_145879852.1\|6516135_6517836_+\|urease-subunit-alpha	unknown	unknown	gnl\|CDD\|237305
NZ_CP046904.1\|WP_145879822.1\|6502112_6502598_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP046904.1\|WP_145879839.1\|6513417_6514119_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP046904.1\|WP_145879854.1\|6517838_6518354_+\|urease-accessory-protein-UreE	gnl\|CDD\|237323	PRK13263, ureE, urease accessory protein UreE; Provisional.	1.88823e-44
NZ_CP046904.1\|WP_145879837.1\|6511636_6513400_+\|DUF885-family-protein	gnl\|CDD\|227142	COG4805, COG4805, Uncharacterized protein conserved in bacteria [Function unknown].	0
NZ_CP046904.1\|WP_145879827.1\|6503726_6505151_-\|phosphohydrolase	gnl\|CDD\|225116	COG2206, COG2206, c-di-GMP phosphodiesterase class II (HD-GYP domain) [Signal transduction mechanisms].	5.0369e-26
NZ_CP046904.1\|WP_145879818.1\|6498748_6499105_-\|hypothetical-protein	gnl\|CDD\|173412	PTZ00121, PTZ00121, MAEBL; Provisional.	0.00012137
NZ_CP046904.1\|WP_145879833.1\|6508667_6509666_-\|SDR-family-oxidoreductase	gnl\|CDD\|235853	PRK06701, PRK06701, short chain dehydrogenase; Provisional.	0
NZ_CP046904.1\|WP_145879831.1\|6507580_6508657_-\|Ku-protein	gnl\|CDD\|238408	cd00789, KU_like, Ku-core domain, Ku-like subfamily; composed of prokaryotic homologs of the eukaryotic DNA binding protein Ku. The alignment includes the core domain shared by the prokaryotic YkoV-like proteins and the eukaryotic Ku70 and Ku80. The prokaryotic Ku homologs are predicted to form homodimers. It is proposed that the Ku homologs are functionally associated with ATP-dependent DNA ligase and the eukaryotic-type primase, probably as components of a double-strand break repair system.	2.45901e-116
NZ_CP046904.1\|WP_145879847.1\|6515465_6515768_+\|urease-subunit-gamma	gnl\|CDD\|183913	PRK13241, ureA, urease subunit gamma; Provisional.	3.93255e-71
NZ_CP046904.1\|WP_145879835.1\|6509984_6511640_+\|sulfate-permease	gnl\|CDD\|273284	TIGR00815, Sulfate_transporter, high affinity sulphate transporter 1. The SulP family is a large and ubiquitous family with over 30 sequenced members derived from bacteria, fungi, plants and animals. Many organisms including Bacillus subtilis, Synechocystis sp, Saccharomyces cerevisiae, Arabidopsis thaliana and Caenorhabditis elegans possess multiple SulP family paralogues. Many of these proteins are functionally characterized, and all are sulfate uptake transporters. Some transport their substrate with high affinities, while others transport it with relatively low affinities. Most function by SO42- :H+symport, but SO42- :HCO3- antiport has been reported for the rat protein (spP45380). The bacterial proteins vary in size from 434 residues to 566 residues with one exception, a Mycobacterium tuberculosis protein with 784 residues. The eukaryotic proteins vary in size from 611 residues to 893 residues with one exception, a protein designated "early nodulin 70 protein" from Glycine max which is reported to be of 485 residues. Thus, the eukaryotic proteins are almost without exception larger than the prokaryotic proteins. These proteins exhibit 10-13 putative transmembrane a-helical spanners (TMSs) depending on the protein. The phylogenetic tree for the SulP family reveals five principal branches. Three of these are bacterial specific as follows: one bears a single protein from M. tuberculosis; a second bears two proteins, one from M. tuberculosis, the other from Synechocystis sp, and the third bears all remaining prokaryotic proteins. The remaining two clusters bear only eukaryotic proteins with the animal proteins all localized to one branch and the plant and fungal proteins localized to the other. The generalized transport reactions catalyzed by SulP family proteins are: (1) SO42- (out) + nH+ (out) --> SO42- (in) + nH+ (in). (2) SO42- (out) + nHCO3- (in) SO42- (in) + nHCO3- (out). [Transport and binding proteins, Anions].	5.83668e-127
NZ_CP046904.1\|WP_145879850.1\|6515797_6516115_+\|urease-subunit-beta	gnl\|CDD\|237303	PRK13203, ureB, urease subunit beta; Reviewed.	4.3183e-67
NZ_CP046904.1\|WP_145880224.1\|6505194_6505632_-\|carboxymuconolactone-decarboxylase-family-protein	gnl\|CDD\|225039	COG2128, COG2128, Uncharacterized conserved protein [Function unknown].	1.02774e-27
NZ_CP046904.1\|WP_145879820.1\|6499279_6501946_+\|DNA-ligase-D	gnl\|CDD\|235658	PRK05972, ligD, ATP-dependent DNA ligase; Reviewed.	0
NZ_CP046904.1\|WP_145880226.1\|6505868_6506621_+\|alpha/beta-fold-hydrolase	gnl\|CDD\|378924	pfam12697, Abhydrolase_6, Alpha/beta hydrolase family. This family contains alpha/beta hydrolase enzymes of diverse specificity.	6.32973e-14
NZ_CP046904.1\|WP_145879845.1\|6514601_6515456_+\|urease-accessory-protein-UreD	gnl\|CDD\|223899	COG0829, UreH, Urease accessory protein UreH [Posttranslational modification, protein turnover, chaperones].	1.55455e-66
NZ_CP046904.1\|WP_145879852.1\|6516135_6517836_+\|urease-subunit-alpha	gnl\|CDD\|237305	PRK13207, ureC, urease subunit alpha; Reviewed.	0
NZ_CP046904.1\|WP_145880228.1\|6518353_6519043_+\|urease-accessory-protein-UreF	gnl\|CDD\|223900	COG0830, UreF, Urease accessory protein UreF [Posttranslational modification, protein turnover, chaperones].	1.42467e-56

>NZ_CP046904.1|WP_145879833.1|6508667_6509666_-|SDR-family-oxidoreductase
MSNSENKSQNVGNLQRDIQQQQDQRDQSKSQSGGGQQGGQEQGVQTGTHDFPSPPLPQQHLAKPGVEADMELKPHFLAPDYKGSGKLQGMSAIVTGGDSGIGRAVAVLYAREGADVALIYLSDEQEDAVETKRCIEAEGQRCILIPGDVRDPQFCRHAVDETIKAFGKIDVLVNNAAFQEHADSLEDLTEERFDLTMKTNIYGYFHMAKAVLPHLKKGASIINTGSVTGLQGSAKLLDYSATKGAIHAFTMSLASNVLEKGIRVNAVAPGPVWTPLNPADQTPEKIAQFGASTDMKRPAQPEELSPAYVFLASPVCSSYITGIVLPVTGSVG
>NZ_CP046904.1|WP_145879831.1|6507580_6508657_-|Ku-protein
MARSLWKGAISFGLVHIPVELYSAVKQNELDLTMLDKRDFSPVGFKRYNKGNGKEVSWDNIIKGYEYTAGEYVVLSDEDLKRANVKATQTIDILAFVPAEDVPLTFYETPYYLAPGRGGDKVYALLRETLRRAGKIAVASVVIRTKQHLCALVASEDGIIMNTLRYADEIRDTEGLNLPAKGMKATGISDKELQMALSLVEGMSDEWDPGQYHDTYKDDVLKLVEKKIAAGQTKSITPPSKEGEAAPSSNVIDLVALLKQSLGAKPAKGRKATADEDEEDTSADTDTEEEEEAAPPRSKKAAPRTSTTRTGSARSSGTARATAKTSAPKSGAAKAAASKPAAKKTAAKSTGTTRRKAA
>NZ_CP046904.1|WP_145879829.1|6506873_6507569_+|hypothetical-protein
MPMSPNRSLRLGATLLLSFSSLPALAGRPLVTDDASVVAPGMCQVEMSAQRDPGQGWFIPACNVANDWEVGAGFGGVRHEGAWRRALAVHAKTLFRPLTEDGWGAGVTFAQQQLTGLNGAQEGLRDRSATLILSIPIASWAIVHANVGGIEHRAAGHGARTWATALETTHGHTGLSLETFGERGAYRTWQAGWRWSAVPDVLDLDAAWGVQHCDGVRANYAVLGLTWTFPR
>NZ_CP046904.1|WP_145880226.1|6505868_6506621_+|alpha/beta-fold-hydrolase
MKLAALAALTTAALLSSGVQAAPEQPAVVIVHGAFADGSDWAKVIPLLQARGVKVTAVQNGLESLAGDVAATRRAIDNQPGKVVLVGHSWGGTVITEAGNHDKVAGLVYVAAFAPDAGQSTAEAGKGYPTPPGIAKLVADKQGYLSLPPDALRQDFAQDVPAAQAAVMAATQGPIQAKAFDEKPTAAAWASRPSWYIVSKNDRMIQPDLERAMAKKIGATTTELPTSHVPQQSRPADVAKVILAAVAAAR
>NZ_CP046904.1|WP_145880224.1|6505194_6505632_-|carboxymuconolactone-decarboxylase-family-protein
MNLAPKSLHAMVNLSQTVKKSELGARIVELVNLRVSQVNGCGVCVDMHWRDLIRQGADPRHLNSIAAWRESPFFDARERAALRWADAVNALPQRDDTDAAWGELREHFSENEIAELSFAIAVIRGWNAINVSLRNPLPVNPLPGM
>NZ_CP046904.1|WP_145879827.1|6503726_6505151_-|phosphohydrolase
MTFDDTVSVADAVQALALVGDLSMGQPTDHSIRTARLAARVADMDGAGPAGCATARTVALLRWSGCTANASGFAALMGDDVGGRHAMLTRTLPPNHPLTFTSVAPLAQVHCEVSGDIARMLGLPLAVEEALRHVFEHVDGSGMPYRLRGAAIPNAVFHVALAGDLEILSRAHGLDAALRLIGELAGRKYPAALVRLVTPHARAWLDALDDDTPCGDAPPSETRVALTLVADMLELKLPALAGFSRRVADVARGAAALLGLPPAQQQCVGRAALIHGLGRAAVPNGVWQREGKLRTADWEKVRLVPYWTARAAIQIPALTAEAQLASHVYERLDGSGYFRSLTGDALSPSHRVLAAAAAWTALCSPRPWRPAYEPAAATALLAAQAARFDRAAVDAVIASAGGTQAPAPRRSGLLSDREVDVLRRISTGESNKEAARALRISPSTVRTHIESIFRKLECSTRAAATLKALTLGLI
>NZ_CP046904.1|WP_145879825.1|6502823_6503639_+|hypothetical-protein
MAPANVAVAAPVAAARAESATPAGPRDLGRAKAGEWMAAIFGDRYDAKARRALTGSADEGFNALSFVAAAQLEAGRVAVIVNGTPADAAGAEQASHAEGGDMHVFVLRSAGAGWQVSDRYENVANLGSHGHFGAVKWIALAPGKPGFIVSSGGVWQGYEILSADIFALAGGVQALGSFNEHSGNSGACGPEADECWDIGGKISVAPAVPGQAGAQYADLVVDFTGERYKVTEDAKGGLEKHHIADVKQTARYRFDGKAYKLVAGENPVPGV
>NZ_CP046904.1|WP_145879822.1|6502112_6502598_+|hypothetical-protein
MNTDRFADCRGRLDLLADLNAERTDVFAAYDLERLPAAADLEEAVGRHFELVGKTRYDPPRDYPAATWHITLEEISGPFEHTLHRMCERWFFRSEVLAAVPLSPHRENVVNGFLAGLVAAIGNCRTWRVHIAPQCWYGIEWDHVAFEAVDGRYMLSFMRSD
>NZ_CP046904.1|WP_145879820.1|6499279_6501946_+|DNA-ligase-D
MKDSLKLYKAKRNFAITPEPAEGGEEGTEALTFVIQKHWATRLHYDFRLELDGTMKSWAVPKGPSYDSHDKRMAVHVEDHPISYNDFEGVIPEKQYGAGKVIIWDKGTWHPIGDPRKGYRDGNLKFELRGHKMHGRWVLVRMRRSGEKQEPWLLIKENDEYVRAADEFSVVDEMPDSVKALGMPTGERLTPAADEAESTALAHQGKPARKKAAGSAAKGAATSTAKPAKSAKTAVAKPGAKAKMPATLSPELATLVDAPPPDPADWIFELKFDGYRLLARVEGGNIGLWTRNGNDWTHKLEPLRAAIEKMRLPDGWYDGEIVVHDQNGKPNFGLLQQAFDGSRTKNIVYFVFDAPYLDGHDLRDVPLAQRRELLKTVLDAKGNDTVRFSAELDAPPAEIVAAACRMGLEGIIGKRRDATYVSRRSGDWIKLKCALRQEFVIGGYTDPQGSRVGIGSLLLGYYDDAGKLHYAGNVGAGFNEKSLRDITAKLHKLASDTNPFAPTKAIEKKAHWVKPTLVAEVTFGEWTGSGSIRHSVFQGLRKDKKAASIRREQAAHVEDVMQTQSTTKAAPVRGKAKAKAKADPVAESDVGSKLPASLKVTNPDRLIDPASGMTKIGLVRYYALVADLMLEHLKGRPVALVRAPAGVGGELFFQKHSEVGKLPGVKQLPQELDPDHPTMLEVATTQGLLSCAQWNVVELHTQNAFARTYDKPNRMIFDLDPGQGVTWERIQEAAQLMRAFLEELGLPTFLKTSGGKGLHVVVPVKPQHDWDTVKGFSKLIVEHMARTLPDRFAFKSGPKNRVGKIFIDYLRNGRGATTVCAWSARTRPGLGISVPVAWDELPHLKGGDQWTVATVHTRLDHGNAPWADYAKSAVSITKAMKQMGYTGA
>NZ_CP046904.1|WP_145879818.1|6498748_6499105_-|hypothetical-protein
MKKVIATLIAGLFAGAAFAQTPAPTTAPAAAPHAEAKHDKAVAKEQKEVAKADAKAAKESAKADEKVAKETAEAKKDVAEAKADAKEKKAKAHAKAAHKKAEAKEDKQSAVTTTPQTH
>NZ_CP046904.1|WP_145879835.1|6509984_6511640_+|sulfate-permease
MLEWLRHYRRAALPGDLGAGVVVAMMMIPQGMAYALVAGLPPVAGLYASILPPLVYALFGSSMTQSVGPMAIVSLMTGAAIAPLAAAGTGLHAVLAAQLALVAGAVLLLCGVLRLGFLANFFSRPVMSGFTVGSSLVIAWGQVKPLLGAAPPRWHAPSAMLGLASLALLVLARGHLAPLLRRLGVRPVAADVVAKLAPMVVVLAATGVVAAFDLGAHGIALTGPVPSGLPQLNLATSPDHWRALLQPGLLIGFVVFLISMSAAQTLAQKRGEKLVSNRELVGLGAANVASMVSGAFPVTGSLSRSAVNFAAGANTPLASVISAVLLALALVLPTGWLALLPLPTLAATIIVAVLGMLELDTLKTAWRYDRGDALAWLVTCIGVLTLGVEAGVIVGVVLSMGTLIWRASRPHIAVLGRIPGTEHFRNVDRYPAATSAGLLILRIDANLFFGNVESVNERIEDELRAHPGTRHLVLNMLAVSSIDTTALFALAELNASLKARGIGLHLAEVKGPVMDRLRDSSLPDQLGGRIFLSTAMAADHLNSTSPEKDPR
>NZ_CP046904.1|WP_145879837.1|6511636_6513400_+|DUF885-family-protein
MKKVSAALLASLAAACVLQAPPLYAATANPADARLRTIYETEWKWRLQQRQEDEEDDTNGIRANLPKVDAATQLARQRYWENVLKQLDGVAANKLSPAEQVNFAVYRSQVAALVANQRFREYEKPLNADSAFWSNMTYEARKPFRTKKDYTNYIAQLNDVPRYFGEQVVNMRAGLARGFTPPKVTLAGRDASLKVVAEAKPEDTAFYQPFKAMPATIPAEEQAALRAAALQAIKDKVIPAHAQLLAFMRDEYVPKSTVNLAAESLPDGKAYYQSKIVEFTTTDLSADQIHQIGLAEMAKIRAEMAQVMKEVKFDGDLPAFLTFLRTDPRFYAKTPEELLMRAAWIAKKFDGKAERYFGRLPRSRFAIIPVPPEQAPYYTSGRGGPGVYLVNTYNLPARALYSLPALTLHESAPGHAFQMPVALEQKGRPAFRNAYISAYGEGWALYAERLGTEMGIYETPYEVFGMLSYQAWRASRLVVDTGIHAKGWTREQAQRYLMENTALSQHEVETEVDRYISWPGQALSYYLGEMAIVEARKKAEAALGDKFDIRPFHDTVLELGSVPLPVLKARIDRFIAEGGKGPYGAES
>NZ_CP046904.1|WP_145879839.1|6513417_6514119_+|hypothetical-protein
MAANFTFCATGLKDPNSAAALWGHYTKGGAGKRSESATGADFALVIPVGKRCRVAIVQAKITDGGTASLYQEGTDNHPAEQMDKLYALGRYWMRELGMDEKCAGDWMHYLLWTKTIPRALTLNQAMQDNTGKGRNVEVKKYGSFATLALAACAPEAFGDKTLVHKGWLELDMREATTRLPDLLPIVDVVLADQGGGGAALAKALSKQSLTKTRKVVAAGNVSVKPTTGLKYKK
>NZ_CP046904.1|WP_145879843.1|6514239_6514470_+|hypothetical-protein
MPLYQIWYNDADQPLVVNTPYRLRDIEIVGEILRSEQRQNRQSADPSGLTVRELLRINGLRNVRYTLDESEPTDLS
>NZ_CP046904.1|WP_145879845.1|6514601_6515456_+|urease-accessory-protein-UreD
MPDCPERQPDPAIHASAAWQASLALGFTRDGAVTRLTRREHAGPLRVQKPLYPEDPSVCHAIVVHPPGGVVGGDQLAIAARLGPDAHALLTTPGAAKWYRANGRVSRQRVHLSAESGGALEWLPQETIFYDDAHVDLEHHVTLALDAAYLGCEILCLGRRASGETFASGRVRQTTSVRRGGRLLWWEQGALTPAVLASPLGLAGRTVCASLLAVGTVLPAPELAALRALADDPCYGVTQMKHVLSVRWLGDDSEAARELMLAAWRIVRPALLGRAAFDPRSWRT
>NZ_CP046904.1|WP_145879847.1|6515465_6515768_+|urease-subunit-gamma
MDLTPREKDKLLIFTAALVAERRLARGLKLNHPEAVALITAAIMEGARDGKTVAQLMSEGTQILTRDQVMEGVPEMISDIQVEATFPDGSKLVTVHNPIP
>NZ_CP046904.1|WP_145879850.1|6515797_6516115_+|urease-subunit-beta
MIPGEYRLQDGDVPINAGRETVTVVVANQGDRPIQVGSHFHFFEANNALVFERWKAYGRRLNIAAGTAVRFEPGQQRTVELVALEGDREVYGFAGQVMGKLKDQP
>NZ_CP046904.1|WP_145879852.1|6516135_6517836_+|urease-subunit-alpha
MATLTRRAYAEMYGPTTGDRIRLADTELFIEIERDHALYGEEVKFGGGKVIRDGMGQSQRVHADVMDTVITNAVIVDHWGIVKADIGLKDGRIAAIGKAGNPDIQPGVTMAIGGATEIIAGEGMIVTAGGIDSHIHFICPQQIEEALMSGVTTMLGGGTGPAVGTAATTCTPGPWHIHAMLQAADAFPMNLGFLGKGNVSLPRPLEEQVEAGAIGLKLHEDWGSTPAAIDNCLSVAERMDVQVALHSDTLNEGGFLEHTLAAFKDRTIHTFHTEGAGGGHAPDIIAAVGVANVLPSSTNPTRPYTVNTLDEHLDMLMVCHHLDPAIAEDVAFAESRIRRETIAAEDILHDMGAISMMSSDSQAMGRVGETILRTWQTAHKMKVQRGALPEDAPGNDNFRVKRYIAKYTINPAITHGISHVVGSLEVGKLADLVLWKPAFFGVKPSMILKGGMIAAAQMGDPNASIPTPQPVHYRPMFGAFGGGLKKSLTFVSQAAFDAGIGARLQLNKPVVAVKNTRGLVKRDMIHNGALPVMEVDPETYEVRADGRLLVCEPAAILPMAQRYFLF
>NZ_CP046904.1|WP_145879854.1|6517838_6518354_+|urease-accessory-protein-UreE
MMTLHTKLAHAEHVHASLVLPYELREKCRLRATLDTGEEVAIFTVRGTVLRDGDLLTGEEGRVVKVVAASEDTYRVTAPDAQALLRCAFHLGNRHTQAQVEAGFLRIRADAVLREMLYGLGATVIEERAPFEPESGAYSAGGHHHHDHGPLAPIPVRQRIHRPGDPREGAS
>NZ_CP046904.1|WP_145880228.1|6518353_6519043_+|urease-accessory-protein-UreF
MAATQLLHLLQFASPQLPIGAYSYSQGLEAALQQGLVHDAPSAHAWIARQLHEVVARWDAPLCWRLMQAYTQRDAPAVAELSERAIASRDTAEFRAETVQMGYSLARLIEELGIADEGALAMLRQDDTAGEVPLVSAYACAVAALGIPHEEALLALLFAWAENQVLVCVKSVPLGQVAGQKLLLALRPDIEAAALCAQSLAEHELSNWTPGLSQLSMRHEVQYSRVYRS

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Crispr_ID: NZ_CP046904_12

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP046904_12

6797313-6797388

Orphan

Consensus_repeat	Method
AAAACAACACCAGGGACAGTCCC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP046904_12

>merge|NZ_CP046904|12|6797313-6797388|CRISPRCasFinder
AAAACAACACCAGGGACAGTCCCTGGTGCGTTATGGGCAGTTGAGCTGGTTTGAAAACAACACCAGGGACTGTCCC

>NZ_CP046904|12|10|6797313-6797388|CRISPRCasFinder
AAAACAACACCAGGGACAGTCCC	TGGTGCGTTATGGGCAGTTGAGCTGGTTTG
AAAACAACACCAGGGACTGTCCC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP046904.1\|WP_145879745.1\|6804417_6804984_-\|prepilin-type-N-terminal-cleavage/methylation-domain-containing-protein	unknown	unknown	gnl\|CDD\|130771
NZ_CP046904.1\|WP_145879739.1\|6806502_6807216_-\|prepilin-type-N-terminal-cleavage/methylation-domain-containing-protein	unknown	unknown	gnl\|CDD\|130771
NZ_CP046904.1\|WP_145881874.1\|6790986_6793200_+\|gluconolaconase	unknown	unknown	gnl\|CDD\|271323
NZ_CP046904.1\|WP_158206873.1\|6782140_6785254_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|377945
NZ_CP046904.1\|WP_145881859.1\|6801743_6802874_+\|pimeloyl-CoA-dehydrogenase-small-subunit	unknown	unknown	gnl\|CDD\|132247
NZ_CP046904.1\|WP_145881870.1\|6794211_6795153_-\|diacylglycerol-kinase	unknown	unknown	gnl\|CDD\|224513
NZ_CP046904.1\|WP_145881872.1\|6793206_6794073_-\|DUF2807-domain-containing-protein	unknown	unknown	gnl\|CDD\|371327
NZ_CP046904.1\|WP_145881868.1\|6795229_6797074_-\|rhamnogalacturonan-lyase	unknown	unknown	gnl\|CDD\|199906
NZ_CP046904.1\|WP_145881860.1\|6800543_6801734_+\|pimeloyl-CoA-dehydrogenase-large-subunit	unknown	unknown	gnl\|CDD\|132248
NZ_CP046904.1\|WP_145879741.1\|6805735_6806506_-\|ABC-transporter-permease	unknown	unknown	unknown
NZ_CP046904.1\|WP_145881882.1\|6785495_6785990_+\|2Fe-2S-iron-sulfur-cluster-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|236910
NZ_CP046904.1\|WP_145881876.1\|6789218_6790853_-\|catalase	unknown	unknown	gnl\|CDD\|163710
NZ_CP046904.1\|WP_145879743.1\|6805055_6805736_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP046904.1\|WP_145881862.1\|6799485_6800475_+\|NAD-dependent-epimerase/dehydratase-family-protein	unknown	unknown	gnl\|CDD\|223528
NZ_CP046904.1\|WP_145881886.1\|6779622_6781869_+\|tail-specific-protease	unknown	unknown	gnl\|CDD\|236873
NZ_CP046904.1\|WP_145881864.1\|6798548_6799469_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|223656
NZ_CP046904.1\|WP_145881881.1\|6785986_6786997_+\|xanthine-dehydrogenase-family-protein-subunit-M	unknown	unknown	gnl\|CDD\|224238
NZ_CP046904.1\|WP_158206874.1\|6803010_6804147_+\|IS481-family-transposase	unknown	unknown	gnl\|CDD\|366234
NZ_CP046904.1\|WP_145881878.1\|6786993_6789162_+\|molybdopterin-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|224446
NZ_CP046904.1\|WP_145881866.1\|6797423_6798392_-\|alpha/beta-fold-hydrolase	unknown	unknown	gnl\|CDD\|223669

Protein	Function_ID	Function_description	E-value
NZ_CP046904.1\|WP_145879745.1\|6804417_6804984_-\|prepilin-type-N-terminal-cleavage/methylation-domain-containing-protein	gnl\|CDD\|130771	TIGR01710, Type_II_secretion_system_protein_G, type II secretion system protein G. This model represents GspG, protein G of the main terminal branch of the general secretion pathway, also called type II secretion. It transports folded proteins across the bacterial outer membrane and is widely distributed in Gram-negative pathogens. [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis].	1.77273e-05
NZ_CP046904.1\|WP_145879739.1\|6806502_6807216_-\|prepilin-type-N-terminal-cleavage/methylation-domain-containing-protein	gnl\|CDD\|130771	TIGR01710, Type_II_secretion_system_protein_G, type II secretion system protein G. This model represents GspG, protein G of the main terminal branch of the general secretion pathway, also called type II secretion. It transports folded proteins across the bacterial outer membrane and is widely distributed in Gram-negative pathogens. [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis].	7.13517e-08
NZ_CP046904.1\|WP_145881874.1\|6790986_6793200_+\|gluconolaconase	gnl\|CDD\|271323	cd14953, NHL_like_1, Uncharacterized NHL-repeat domain in bacterial proteins. This bacterial family of NHL-repeat domains is found in a variety of domain architectures. The NHL (NCL-1, HT2A and LIN-41) repeat is found in multiple tandem copies, typically as 6 instances. It is about 40 residues long and resembles the WD repeat and other beta-propeller structures.	5.88923e-115
NZ_CP046904.1\|WP_158206873.1\|6782140_6785254_-\|hypothetical-protein	gnl\|CDD\|377945	pfam07940, Hepar_II_III, Heparinase II/III-like protein. This family features sequences that are similar to a region of the Flavobacterium heparinum proteins heparinase II and heparinase III. The former is known to degrade heparin and heparin sulphate, whereas the latter predominantly degrades heparin sulphate. Both are secreted into the periplasmic space upon induction with heparin.	2.21267e-08
NZ_CP046904.1\|WP_145881859.1\|6801743_6802874_+\|pimeloyl-CoA-dehydrogenase-small-subunit	gnl\|CDD\|132247	TIGR03203, pimD_small, pimeloyl-CoA dehydrogenase, small subunit. Members of this protein family are the PimD proteins of species such as Rhodopseudomonas palustris, Bradyrhizobium japonicum. The pimFABCDE operon encodes proteins for the metabolism of straight chain dicarboxylates of seven to fourteen carbons. Especially relevant is pimeloyl-CoA, basis of the gene symbol, as it is a catabolite of benzoyl-CoA degradation, which occurs in Rhodopseudomonas palustris.	2.99567e-101
NZ_CP046904.1\|WP_145881870.1\|6794211_6795153_-\|diacylglycerol-kinase	gnl\|CDD\|224513	COG1597, LCB5, Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase [Lipid metabolism / General function prediction only].	1.45615e-30
NZ_CP046904.1\|WP_145881872.1\|6793206_6794073_-\|DUF2807-domain-containing-protein	gnl\|CDD\|371327	pfam10988, DUF2807, Putative auto-transporter adhesin, head GIN domain. This bacterial family of proteins shows structural similarity to other pectin lyase families. Although structures from this family align with acetyl-transferases, there is no conservation of catalytic residues found. It is likely that the function is one of cell-adhesion. In Structure 3jx8, it is interesting to note that the sequence of contains several well defined sequence repeats, centred around GSG motifs defining the tight beta turn between the two sheets of the super-helix; there are 8 such repeats in the C-terminal half of the protein, which could be grouped into 4 repeats of two. It seems likely that this family belongs to the superfamily of trimeric auto-transporter adhesins (TAAs), which are important virulence factors in Gram-negative pathogens. In the case of Parabacteroides distasonis, which is a component of the normal distal human gut microbiota, TAA-like complexes probably modulate adherence to the host (information derived from TOPSAN).	6.26297e-25
NZ_CP046904.1\|WP_145881868.1\|6795229_6797074_-\|rhamnogalacturonan-lyase	gnl\|CDD\|199906	cd10318, RGL11, Rhamnogalacturonan lyase of the polysaccharide lyase family 11. The rhamnogalacturonan lyase of the polysaccharide lyase family 11 (RGL11) cleaves glycoside bonds in polygalacturonan as well as RG (rhamnogalacturonan) type-I through a beta-elimination reaction. Functionally characterized members of this family, YesW and YesX from Bacillus subtilis, cleave glycoside bonds between rhamnose and galacturonic acid residues in the RG-I region of plant cell wall pectin. YesW and YesX work synergistically, with YesW cleaving the glycoside bond of the RG chain endolytically, and YesX converting the resultant oligosaccharides through an exotype reaction. This domain is sometimes found in architectures with non-catalytic carbohydrate-binding modules (CBMs). There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain through a beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11.	0
NZ_CP046904.1\|WP_145881860.1\|6800543_6801734_+\|pimeloyl-CoA-dehydrogenase-large-subunit	gnl\|CDD\|132248	TIGR03204, pimC_large, pimeloyl-CoA dehydrogenase, large subunit. Members of this protein family are the PimC proteins of species such as Rhodopseudomonas palustris and Bradyrhizobium japonicum. The pimFABCDE operon encodes proteins for the metabolism of straight chain dicarboxylates of seven to fourteen carbons. Especially relevant is pimeloyl-CoA, basis of the gene symbol, as it is a catabolite of benzoyl-CoA degradation, which occurs in Rhodopseudomonas palustris.	5.76726e-177
NZ_CP046904.1\|WP_145881882.1\|6785495_6785990_+\|2Fe-2S-iron-sulfur-cluster-binding-domain-containing-protein	gnl\|CDD\|236910	PRK11433, PRK11433, aldehyde oxidoreductase 2Fe-2S subunit; Provisional.	2.16907e-80
NZ_CP046904.1\|WP_145881876.1\|6789218_6790853_-\|catalase	gnl\|CDD\|163710	cd08154, catalase_clade_1, Clade 1 of the heme-binding enzyme catalase. Catalase is a ubiquitous enzyme found in both prokaryotes and eukaryotes, which is involved in the protection of cells from the toxic effects of peroxides. It catalyzes the conversion of hydrogen peroxide to water and molecular oxygen. Catalases also utilize hydrogen peroxide to oxidize various substrates such as alcohol or phenols. Clade 1 catalases are found in bacteria, algae, and plants; they have a relatively small subunit size of 55 to 69 kDa, and bind a protoheme IX (heme b) group buried deep inside the structure. They appear to form tetramers. In eukaryotic cells, catalases are located in peroxisomes.	0
NZ_CP046904.1\|WP_145881862.1\|6799485_6800475_+\|NAD-dependent-epimerase/dehydratase-family-protein	gnl\|CDD\|223528	COG0451, WcaG, Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism].	2.71337e-51
NZ_CP046904.1\|WP_145881886.1\|6779622_6781869_+\|tail-specific-protease	gnl\|CDD\|236873	PRK11186, PRK11186, carboxy terminal-processing peptidase.	0
NZ_CP046904.1\|WP_145881864.1\|6798548_6799469_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|223656	COG0583, LysR, Transcriptional regulator [Transcription].	8.41465e-36
NZ_CP046904.1\|WP_145881881.1\|6785986_6786997_+\|xanthine-dehydrogenase-family-protein-subunit-M	gnl\|CDD\|224238	COG1319, CoxM, Aerobic-type carbon monoxide dehydrogenase, middle subunit CoxM/CutM homologs [Energy production and conversion].	6.02515e-73
NZ_CP046904.1\|WP_158206874.1\|6803010_6804147_+\|IS481-family-transposase	gnl\|CDD\|366234	pfam00665, rve, Integrase core domain. Integrase mediates integration of a DNA copy of the viral genome into the host chromosome. Integrase is composed of three domains. The amino-terminal domain is a zinc binding domain pfam02022. This domain is the central catalytic domain. The carboxyl terminal domain that is a non-specific DNA binding domain pfam00552. The catalytic domain acts as an endonuclease when two nucleotides are removed from the 3' ends of the blunt-ended viral DNA made by reverse transcription. This domain also catalyzes the DNA strand transfer reaction of the 3' ends of the viral DNA to the 5' ends of the integration site.	1.12014e-21
NZ_CP046904.1\|WP_145881878.1\|6786993_6789162_+\|molybdopterin-dependent-oxidoreductase	gnl\|CDD\|224446	COG1529, CoxL, Aerobic-type carbon monoxide dehydrogenase, large subunit CoxL/CutL homologs [Energy production and conversion].	0
NZ_CP046904.1\|WP_145881866.1\|6797423_6798392_-\|alpha/beta-fold-hydrolase	gnl\|CDD\|223669	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only].	6.95601e-43

>NZ_CP046904.1|WP_145881868.1|6795229_6797074_-|rhamnogalacturonan-lyase
MSGEPMTRNFAPIALLTLALTQSAVAAQGKQVEKLDRGAVAIATANGVFVSWRVLGTDDAETRFNIYRDGVKLNAAPLDVSNYADAGGTASAAYAIRPVVKGKEKQAEAAQATWNQPYLRIPLQQPAGGTTPDGVAYTYDANDGTPADLDGDGQYELIVKWQPTNAKDNSQSGYTGNTYIDAYRLDGKRLWRIDLGRNIRAGAHYTTMVAYDLDGNGRAEVMLKTADGTVDGTGTVIGDADADYRNSAGYILSGPEFLTVFDGRTGKALATTNYLPARGTVGSWGDNYGNRVDRFLGGVAYLDGRRPSAIFSRGYYTRAVIAAWDYRDGQLTSRWVFDTDAEGSAARGQGAHWFSVADVDGDSRDDIIYGAATIGSDGHLLYSTNLCHGDALHVGKLDPSRPGQQIYMVHESPSCYGTAGAEMHDAATGKLLWSVATTGDVGRGVCMDIDPAYPGEECWASRGGLMAANGTEISATHPNRINFASWWDGDLLRESLDGVGIDKWQPATATFERILDGSLYDAASNNGTKATPVLSADILGDWREEVVWRTADNSALLVFSTTAPTASRIPTLMHDPQYRAQVAGQNAGYNQPPHPSFHLGHGMAPVVQAPIFTR
>NZ_CP046904.1|WP_145881870.1|6794211_6795153_-|diacylglycerol-kinase
MTENLPADAPLYIVLNAGSGAAETAERRAAIEQTLTAAGRRFHLHLIEDASTLDEAATAHAGAACKHGGILVAAGGDGTINAVARQAVAHGCPFGALPQGTFNYFGRTHGIPEELADAVHALLTATIQPVQIGSVNGHIFLVNASIGLYPKLLEEREQDKRQFGRSRFVALLSALKTILMPHRRLRLTLETEGRTLRLRTPTLFVGNNRLQMEQVGLAELAPDVAEGELTAVAPKPVGRLGMLGLLFHGALGRMADTGDVTAFGFRRMTVHTPFYGRKRVKAAVDGELLTLSTPLQFEALEGRLRLLLPRREG
>NZ_CP046904.1|WP_145881872.1|6793206_6794073_-|DUF2807-domain-containing-protein
MRPPTLSALPALIATILAGCVIVVPGDRHAADGATLEGDGNVVAETRAVDGAPALELAGRRQVDLDVAVQVGAAPALSLEGDANVLAHLHTETRGGTLRIWSDRDVHATQPVRVRYTVPRLERLETAGSAGTHVSGLAGGTLHVVQRGSGRIELRGHVDRLEAVNSGSGRLVADALDAGSARVALNGSGRVSVGGVHGDALQAQLYGSGTLTARGEVRQADVTVYGSGDAELAGLHAASADLATTGSGDIAIAVTGRVTTHTNGAGSITIYGDPLERSVAGKGTAFVR
>NZ_CP046904.1|WP_145881874.1|6790986_6793200_+|gluconolaconase
MNQKLLYTALGGAVLLAGAAAIHHWTMAPAGPAGNAGAPAVLTPAQTRTDRFWSARVATLAGTGVPGVADGAAAQAVFSDPFGIAAGPRGTVYVADGGDANRIRTIAPDGRVATLAGGTEGYADGKGAAAHFNTPSAVALDHQGNLYVADTGNHAIRKVSPDGTVTTLAGNGQPGDADGKGAAARFNGPVGIAVDDAGIVYVADTYNDRIRRIAPDGTVTTIAGSGQPGDDDGPAAAAAFDTPSGIAVAPDGTLFVADTGNHAVRRIGTDGVVTTVAVPPQGERRAILRRPMGIAVTRDGYLYVTAGAGGRVLQVAPDGEYRPIGEMGRPVEPEYGSDGSVQLSGPRGIAVQRDGGLVVADALGFAVMRLAPAAHGAAAAPVAAARPKPVPQRKTMPWPVLPQDAPHEVVGVMGEVRGNFDGESRDHFHAGLDVRADVGAKVVAAAAAKVTDPYPNWGYATLSEGLSVGTLSYIHMKVGRDRKDKALDGRFTVLTDRRGKPARVRVQRGTRFAVGDVLGTINPMAHVHLDYFPAGGIENPLSLPFVGLRDTVAPRVQSIVLLADRGKRLGAPREPIAKKIKGRKKAQPAEPAPPRRVRVPRSVGDVDIVVDAWDQMDGNLARRRLGLYKLGYQLLHEDGTPAPGYEQPRITQVYDRLPRNPEAVKLVYAASSGITVYGSKATQFAYAVNNRLEDGRATPGTWHVADIAPGRYTLRIYAADYAGNVATEGRDLPIEIE
>NZ_CP046904.1|WP_145881876.1|6789218_6790853_-|catalase
MKHKPESHQPDRPDGERPILTTRQGHPVRDNQALRSVGERGPATLENYQFIEKITHFDRERIPERVVHARGTGAHGYFEAYGKIGNEPAAKYTRARVLNETGVQTPVFVRFSTVIGGKDSPETARDPRGFAVKLKTVDGNWDLVGNNLKIFFIRDAIKFPDMIHAFKPDPVTNRQEPWRFYDFVSNSPEALHMVTWVKSPWGIPANYREMEGAGVNTYKLVNDQGVAHLVKFHWQPKQGVRNLTAAQAAEIQAHDVGHATKDLYEAIERGDYPEWEFCVQIMSDDDHPELDFDPLDDTKRWPEDRFPLLPVGRMVLNRNPDNVFAETEQSAFGTGVLVDGIDFSDDKMLQGRTLSYSDTQRYRVGPNYLQLPINAPQQAAQARTNQRDGQMAYHVDDGGANKHINYEPSSLGGLQESPPPAREYRQWVEGHVGRYQTSRTQDDYRQAGERYRTFEDWERDELVKNLGDDLRQCPEPIALRMVWHFWHCDEEYGRRVAEAAGIDLAKARALPPLPGKPAPNAEREVPTYTDGKQEAAAQEAAPVK
>NZ_CP046904.1|WP_145881878.1|6786993_6789162_+|molybdopterin-dependent-oxidoreductase
MRDDVLGAGLPRIDGPRKVSGHARYTADHHFPGMLIALPVCATIGRGTIRRVDCGAALAMPGVQAIYTRENIGHIAALPEDSKLEIDEKVPPMQDDQVRYYGQYVALVLADTFEQARDAVRLVQVDYDAETPDVRTELEPGGRMKTETERGDPDSAFAHAPVAIDETYRTPIETHNPMELHATVARWEGDSLTVYETTQAIVNHRGVLAAMLRVPEERVRVVTAFLGGGFGGKLWPWSHSLLAARAAQLAQRPVKLVVTRQMMFRSVGHRTNTQQRIRLGADGKGKLISLQHDFLFHSAPAGMSSEACGEATGYLYSCPNLRVTGGSRQRDFGVNTAMRGPGAVPGMFALESAMDELAVRLGIDPVALRLLNEPELDESKGVPFSSRHLRECLQLGAERFGWARRDAGIGAMRDGDTILGWGVASATWLGMRRPAQCAIRLHDDGVVTVRSATQDIGTGTCTVLAQLTAHALGLDVDRVRVEIGDTDLPPGPVSGGSMATASLATAVAMAARHAARQLLDVAGREQEGRELALVEGMVKGADGAQPFADVLRHAGVEYVEGQGESRWSFKDPHAKSVSIQSFGCHFVEVAWQPAIARLAVRRVVSVIDGGRIVNAKTARNQIEGAVQMGVGMALLEHTHYDHRNGAPVNGNLADYMMVTHADAPHVDVTFLDHPDHALNEYGVRGVGEIGLVGVAPAITAAVYHATGRRIRSLPVTIEALLA
>NZ_CP046904.1|WP_145881881.1|6785986_6786997_+|xanthine-dehydrogenase-family-protein-subunit-M
MRQFELRRAASVQDAVLLGAAASTAQQGAEVRYLAGGTTLLDLMKLDVEHPRHVVQLAPLGLDRIEALPDGGLSIGALVRNSDLAHDERVRRGYPVLSEALLSGASAQLRNMATTAGNLLQRTRCVYFRDAAMACNKRAPGSGCDAMAGYHRNLAILGTSAHCIATNPSDMNAALAVLEPCVHVTGLHGAREIPFSKFHLVPGDTPHIETTLQPGDLVTHLTLPALPDGTRSGYLKLRDRASYEFALASCAVVLAVEGGVVERIRIGLGGVATRPWRAIEAEHALTGKPLSRQGVEAAAVAALRDARPLAGNAFKVELARRAIVQAIGNVAGEALR
>NZ_CP046904.1|WP_145881882.1|6785495_6785990_+|2Fe-2S-iron-sulfur-cluster-binding-domain-containing-protein
MQNREKPHPARGATIVVNGVEQPVNVDVRTTLLDYLRDHLHLTGTKKGCDHGQCGACTVHVNGRRINACLALALAHAGDEVTTIEGLGAPERLHPMQAAFVAHDGYQCGYCTSGQIMSAVALLDEPCGRDDADVRECMSGNLCRCGAYANIVAAIQQVRREGGK
>NZ_CP046904.1|WP_158206873.1|6782140_6785254_-|hypothetical-protein
MSPMRVMRTISAAASLVFATNALAAVTEVPLPEIKTTHPRLYASKDDIDALRAKLMPAVPLPKDEGTVEYTFTPQERSRLNPADAVLFGTLDQEVAPDGTKPNYMFLRHKEFDTGKFGVEVAFVGNGARKSSYIYLTPGVRTTIRMHYNRLQGKVSVSVDGNTVTGWPTDLAWAPGKYPQRFYFVGRKDDNAHIRVLEGPEPGNEIWTSDSIDFDLTANWWFLEKQTKQLAVEISKCDPKTEYSRENVCNVLTAARNVITDAAYRLGLVYQITKDKTYLEAAATYATMINNAPLTAGDEWSMGARVGALGIIYDWFHYELENPDNNPDFVQYAALYRDIPERIVATIRADITSPANRADDDLMAMVCGKVGLDPSPGVLRCNGPANIDGYYISGHNASAMHGMALGLLAIADKTRKAEVTPLLTTIYSHLVNGILTARDIISVDGGSNQLFAYGAGGGEIIERLIMWRRVLDNPDRDGAQLDRAFVPKLIKPFIYGLRMGYSDGKTAWENSYPASGDNYAFGVTAQEVGYMALAAATTKPDPAASDYDEQVEAAGIATTFYEEHVKKYRRRLSFDQVFDELYFPVEKAAPVALTKQPLGARFSVAGNALMRDTWDYDNAALLDFKSTSFSSQNHQHLDQNSFSLFYKAPLLIDSGSYDKYESPHWWNYYRRTIAHNSIVVFDKDEIYGDGTYSNDGGQWDREAAYPTLAQITGTGSNVLGGITAFENGERYSYVVGSASKAYQAKDCNNSPKLECENGFIRSIVYLRPTSGKPLIVVHDRIESPKKLPATALLHSITRPMTYGEQSGGTDGRYSIVGASNPPIVIRNGDGMVTVEPVLPAGAAIKIVGGSIEHSGRCLQSIDSDTRTGDCRFTVRTRSKEGTYAWVNYPYQVNDSNKDFLQEVGAWRIEISPVADDVATASRYQFFLNVLRVADYNEVAPIPQQKTSAILQSSNGSANAVALDANTSVVFYVDKSLPLRWTPAHTDSNVLVIGLKKELRYKVQPAPGSVTEYTVVEAADGTPSSKHGVLYIKGKNPL
>NZ_CP046904.1|WP_145881886.1|6779622_6781869_+|tail-specific-protease
MKKQMLLAAMSLAILSAYGHAAPADKATTEQLKPAAQQTQAALWASRVLSRYHYKAVPLDDAMSEKIFDRYFKSLDAEKLFFVQTDLDKYAGAKAKLDDGIVGENLQVPFDIYNLYQQRFAERIAYARELLKTKPDFTLDESYQYDREKADWPKSDAEVKDLWRKRVKNDWLRLKLAGKDDKAIRDTLDKRYENYLSRSRKLNNEDVFQIFMNAYAMSIEPHTNYLGPRASDNFDIQMRLSLEGIGAVLQTRDEYTVIREIVTGSPAGMSGKLKVGDKIVAVAQGDNGALQDVLGWRIDDVVQQIRGPKDSTVRLQVLPGDAGPDAKPVMVSLVRKKISMEEQSAKKTIMEVRDGTVKRRIGVISLPTFYQDFEARRRGDKDYKSATRDVARLLGELKKDKVDNVLIDLRNNGGGSLTEAVELTGLFIDKGPVVQQRSAEGRVEVENDTVPGLAWDGPVGVLINRGSASASEIFAAAMQDYGRGIIIGEPSFGKGTVQTLISLDRFAQDKSRLGELKMTVAQFFRINGGTTQLRGVTPDIKLPQLADAENFGESSYDNALPYTVIKPAVYIPAGEVKDIVPMLEKKHDARVAKDKDFQFLVDDVNYVKKQRKDNLISLNEKVRRKERDEQEARAKLRDARLAAAPSADDPILVPDPKEAVKNAVAAKPAGAKQTKQAAAAAVKGVSRTDDGLQGDERSLAAELEAEKAAKNAKDVLLNEAVHILADEVALLKTDTRLASRVLPYAPDR
>NZ_CP046904.1|WP_145881866.1|6797423_6798392_-|alpha/beta-fold-hydrolase
MSNENNINLSRRSALMGSAALSALAAVPLAAGFAGEAAAAPQKAVRKTASTFTTRDGVEIYYKDWGHGQPIVFSHGWPLNSDSWESQMIHLANNGFRVIAHDRRGHGRSSQPWDGNDMDHYADDLAQLIELLDLKDAILAGFSTGGGEVARYVGRHGTKRVAKLALVSAVPPIMVKTPFNPGGLPIDVFDGIRAAQLANRSQLYLDIPSGPFYGFNRPGAKVSQGLIQSWWMQGMMGGHKNTYDSIKAFSETDFRADLAKFDKPTLIIHGDDDQIVPIDAAGRASAKIVKHAQLIVYPGAPHGLTDTHKDKVNADLLAFAKA
>NZ_CP046904.1|WP_145881864.1|6798548_6799469_+|LysR-family-transcriptional-regulator
MRIPHKAENDKLPMANDFDWNDIPLILALARTGSMSATGRELGMDGSTISRRIAAAEKALNLRLFTRDTTRWHLTEPGQVFVEHGEAVFGNVQSMLLASAREADTVAGPVRLSAIDFLFDHWLVRHLPAFTAQHPEVEVQLFADNQNVSFTRREADFALRLAQPTDDAAVLMRRLGDIGWAVYGAGPYAQVPRERWGEQPWIAHEEAKCHLPEMRWLARLAPEPRIALRVNSLSTMVQACRAGVGLALLPCIIEGRDGLVRLSQGAEVFRELWLLSHRDAGAIGRFKVVAAWIAALYEESRHRLCD
>NZ_CP046904.1|WP_145881862.1|6799485_6800475_+|NAD-dependent-epimerase/dehydratase-family-protein
MRILVTGSTGHLGEALVRVLRAQEHDVVGLDILPSPFTGAVASITDPDALCAAMRGSDAVLHAATLHKPHVATHTRAQFVDTNVHGTLNVLEAALAAGVQRVVMTSSTSVFGAAMTPPAGSPAAWIDETVTPIPKNIYGVTKLAAESLCELFARQHGLPVVVLRTSRFFPEADDARDTRERYADANVKVNEFLHRRADIEDIVDAHLLAMERAPALRFGRYIVSATTPFTRDDVAALRTDAAAVVRERVPACAAEYARRGWALFPTLDRVYDNTLARTALGWQPRHDFAGVLARLATQAIDADIRSPLAQQIGSKGYHDRVFDDGPYPV
>NZ_CP046904.1|WP_145881860.1|6800543_6801734_+|pimeloyl-CoA-dehydrogenase-large-subunit
MDLNYTAEDEAFRADVRAFLAEHLPPDLRHKVRKHLRLTKDDYVRWHKIVAQRGWSVPAWPVEYGGPGWSATQRHIWDDECARAGTPQILPFGVNMVAPVIMAFGNAEQKAYYLPRIRDCDDWWCQGYSEPGAGSDLASLKTTAVRDGDDYIVNGQKTWTTLAQHADMIFCLVRTDPTVRKQEGISFLLIDMKSPGITVRPIIMLDEEHEINEVFFDNVCVPVRNLIGQENKGWTYAKYLLGHERTGIAAVGRSKRELGFLKQLALRQQDGGRPLLDDPQFAAKVAQVEVELMALEVTVLRTIAQEGQAPGPQASLLKVKGTEVQQMLTELMVEALGPAALPFEPDYLEGRAAHPVTGDEDTAPLAAYYFNYRKTSIYGGSNEIQKNIIAQMILGL
>NZ_CP046904.1|WP_145881859.1|6801743_6802874_+|pimeloyl-CoA-dehydrogenase-small-subunit
MHFELKEEQRQLADALRRWIERDYTFDARRAIVRSDTGTSPQAWSTLVELGLTALPIAEAQGGFAGTAADMFVVMQELGRGLVVEPYFATMLGARFLQLAGGQEEMLAQVAAGELKLACALGEPQSRHDLADIVTKASGPLDAAAVSGVKTVVLHGGQADAFIVSARSHGEQRDRDGISLFVVDADTSGLVIHDVRAIDGQRAATITFDHAPATPLGTPGAGWDVLEAAADYGAALLCGEAVGVMDALFAATLDYLKTRQQFGGPIGKFQALQHRMADMFIHLEQARSIALLAAVKADSPDVEERRRVVSAAKARVGEAARFVGQQAVQLHGGIGVTDELPAAHWFKRLTTIGLTLGDTDHHLRRFAAQPGFRDVA
>NZ_CP046904.1|WP_158206874.1|6803010_6804147_+|IS481-family-transposase
MPWKESTSMSSRQEFVLLALRPSANIAELCRRFGVSRKTAYKWLERYRAGGELGLLDRSRQPHSSPVTADGELEMQVLALHLEYPYWGARKLCALLPDAVKRPHHSTVHAILKRHGCQVLGAPVSQNIVFNRFEHELPNDLWQMDFKGHFALTDTAAGRCHPLTVLDDHSRFSLCIAACADQRYVTVRMALQSTFERYGMPARFTADNGPPWGSTGLIGLTKLEVWLTRLGIAVGHSRPNHPQTQGKDERFHRTLKLEVIGRKGYGSLAQCQRAFDDWREIYNTVRPHQALNQQPPISRYRCSGRSFPSVLPPIEYLPDDQVRKVSKLGYISYRNQSFFVGEGLYAELVAIRPTGTDGVLEVYFCKHKVRQIDLQNPS
>NZ_CP046904.1|WP_145879745.1|6804417_6804984_-|prepilin-type-N-terminal-cleavage/methylation-domain-containing-protein
MSHSGARAARGFTLVEIAIVLVIIGLLLGGVLKGQSLIDNAKIKNVIQQSTSLQAAVNAYQDKFRALPGDDAQATAHVPGTSGNGNGDGQIAEYQLAPQHLALGGFITGSFNGSTDFMTSAQGGAVYIYNDVIAGRGGNGIRFDNLPDSFSEQLDSKLDDGKPDTGAVRATGPYTNNGTIVTRTAVFF
>NZ_CP046904.1|WP_145879743.1|6805055_6805736_-|hypothetical-protein
MRRRVPAAVVVPLLAALAAQLALHRAAPPLLAAHAPLPPAPPPLLLRLASLGDAPVAARLALLYLHAYDTGLPLRELDYGRIVQWLDAALALDPHSRQPLLAATLVYGAVPDAARVRTMIGFVERAFAADPAERWPAMAQAALLARHRLHDMALARRCAQAIRVRAPNAPAWARELEIFILQDMNELDSARAVTGALLESGTVTDPAEVRFLERRLKELEQAGAAR
>NZ_CP046904.1|WP_145879741.1|6805735_6806506_-|ABC-transporter-permease
MTGAVGALRAIAASTVKEALRSRLAWLLAALLLGSVALAGFLQAALPGDGRGTQAVLLGALLRLAAVCVAAVFAVTSLVREYQDKQADLFIALPYPRATWLLGRLAGCGALALLIALPAGALVLLVAPPGQAALWALALLGETWIVAAFAVFCTLTLQHALPSLCATYGFYVLARSAAALQLAGHDAVADTSQGVIAAGIDALAFVLPRLDAFARGEWLEHHTGSAADLAFVAAQTAIYVTLLALAALFDLYRKEF
>NZ_CP046904.1|WP_145879739.1|6806502_6807216_-|prepilin-type-N-terminal-cleavage/methylation-domain-containing-protein
MKASPFTQRGFTLVEIAIVLIVVGLLIGGLITPLSTQLEQRRSADTRKALDEAREALVGYAVRNGHLPCPAISAANGLEDRAGDRCTNERRTGFLPWATLGTAKLDSWGRIFLYSVTPDFADSAAPFRLSTPRDITVATRDAAGNLVAATAPNDIPAVIISTGKNGYGGFSDLGVRLADAGTGNADEKANLNPIGTAFIARGGSDNAALPGGAFDDDVVWVSPNILFNRMIAARRLP

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Crispr_ID: NZ_CP046904_13

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP046904_13

6838685-6838773

Orphan

Consensus_repeat	Method
TGGGGTCAGACCCCGACGGGACAC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP046904_13

>merge|NZ_CP046904|13|6838685-6838773|CRISPRCasFinder
TGGGGTCAGACCCCGACGGGACACGGGCTCGGCTGTGCAACCGGGTTGTTGAGCTCGTGTCCCTTTGGGGTCAGACCCCGACAGGACAC

>NZ_CP046904|13|11|6838685-6838773|CRISPRCasFinder
TGGGGTCAGACCCCGACGGGACAC	GGGCTCGGCTGTGCAACCGGGTTGTTGAGCTCGTGTCCCTT
TGGGGTCAGACCCCGACAGGACAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP046904.1\|WP_145879671.1\|6844116_6844677_+\|polyhydroxyalkanoate-synthesis-repressor-PhaR	unknown	unknown	gnl\|CDD\|227682
NZ_CP046904.1\|WP_145879701.1\|6830433_6831225_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|377391
NZ_CP046904.1\|WP_145879688.1\|6837372_6837855_-\|putative-toxin-antitoxin-system-toxin-component,-PIN-family	unknown	unknown	gnl\|CDD\|379205
NZ_CP046904.1\|WP_145879766.1\|6831230_6831578_+\|MSHA-biogenesis-protein-MshK	unknown	unknown	unknown
NZ_CP046904.1\|WP_145879699.1\|6831595_6833365_+\|pilus-(MSHA-type)-biogenesis-protein-MshL	unknown	unknown	gnl\|CDD\|274176
NZ_CP046904.1\|WP_145879680.1\|6839934_6841095_+\|RluA-family-pseudouridine-synthase	unknown	unknown	gnl\|CDD\|223638
NZ_CP046904.1\|WP_145879663.1\|6848292_6849570_+\|extracellular-solute-binding-protein	unknown	unknown	gnl\|CDD\|224567
NZ_CP046904.1\|WP_145879696.1\|6833364_6834258_+\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|132060
NZ_CP046904.1\|WP_145879683.1\|6839132_6839936_-\|outer-membrane-protein-assembly-factor-BamD	unknown	unknown	gnl\|CDD\|274513
NZ_CP046904.1\|WP_145879676.1\|6841885_6842077_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP046904.1\|WP_145879764.1\|6846888_6848211_+\|beta-glucosidase	unknown	unknown	gnl\|CDD\|274539
NZ_CP046904.1\|WP_145879703.1\|6829729_6830437_+\|MSHA-biogenesis-protein-MshI	unknown	unknown	gnl\|CDD\|237030
NZ_CP046904.1\|WP_145879686.1\|6837893_6838661_+\|peroxide-stress-protein-YaaA	unknown	unknown	gnl\|CDD\|234999
NZ_CP046904.1\|WP_145879690.1\|6836159_6837347_-\|aminotransferase-class-I/II-fold-pyridoxal-phosphate-dependent-enzyme	unknown	unknown	gnl\|CDD\|181642
NZ_CP046904.1\|WP_145879694.1\|6834254_6835301_+\|tetratricopeptide-repeat-protein	unknown	unknown	gnl\|CDD\|237865
NZ_CP046904.1\|WP_145879673.1\|6842124_6843888_+\|class-I-poly(R)-hydroxyalkanoic-acid-synthase	unknown	unknown	gnl\|CDD\|213656
NZ_CP046904.1\|WP_145879668.1\|6844681_6845590_-\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|176150
NZ_CP046904.1\|WP_145879678.1\|6841091_6841883_+\|peptidoglycan-editing-factor-PgeF	unknown	unknown	gnl\|CDD\|182677
NZ_CP046904.1\|WP_145879665.1\|6845675_6846452_+\|NAD(P)H-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|225158
NZ_CP046904.1\|WP_145879692.1\|6835322_6836159_-\|metal-dependent-phosphohydrolase	unknown	unknown	gnl\|CDD\|225116

Protein	Function_ID	Function_description	E-value
NZ_CP046904.1\|WP_145879671.1\|6844116_6844677_+\|polyhydroxyalkanoate-synthesis-repressor-PhaR	gnl\|CDD\|227682	COG5394, COG5394, Uncharacterized protein conserved in bacteria [Function unknown].	7.76914e-64
NZ_CP046904.1\|WP_145879701.1\|6830433_6831225_+\|hypothetical-protein	gnl\|CDD\|377391	pfam04612, T2SSM, Type II secretion system (T2SS), protein M. This family of membrane proteins consists of Type II secretion system protein M sequences from several Gram-negative (diderm) bacteria. The precise function of these proteins is unknown, though in Vibrio cholerae, the T2SM (EpsM) protein interacts with the T2SL (EpsL) protein, and also forms homodimers.	2.8231e-05
NZ_CP046904.1\|WP_145879688.1\|6837372_6837855_-\|putative-toxin-antitoxin-system-toxin-component,-PIN-family	gnl\|CDD\|379205	pfam13470, PIN_3, PIN domain. Members of this family of bacterial domains are predicted to be RNases (from similarities to 5'-exonucleases).	7.86307e-22
NZ_CP046904.1\|WP_145879673.1\|6842124_6843888_+\|class-I-poly(R)-hydroxyalkanoic-acid-synthase	gnl\|CDD\|213656	TIGR01838, Poly-beta-hydroxybutyrate_polymerase, poly(R)-hydroxyalkanoic acid synthase, class I. This model represents the class I subfamily of poly(R)-hydroxyalkanoate synthases, which polymerizes hydroxyacyl-CoAs with three to five carbons in the hydroxyacyl backbone into aliphatic esters termed poly(R)-hydroxyalkanoic acids. These polymers accumulate as carbon and energy storage inclusions in many species and can amount to 90 percent of the dry weight of cell. [Fatty acid and phospholipid metabolism, Biosynthesis].	0
NZ_CP046904.1\|WP_145879699.1\|6831595_6833365_+\|pilus-(MSHA-type)-biogenesis-protein-MshL	gnl\|CDD\|274176	TIGR02519, related_to_type_II_protein_secretion_protein, pilus (MSHA type) biogenesis protein MshL. Members of this family are predicted secretins, that is, outer membrane pore proteins associated with delivery of proteins from periplasm to the outside of the cell. Related families include GspD of type II secretion (TIGR02517), the YscC/HrcC family from type III secretion (TIGR02516), and the PilQ secretin of type IV pilus formation (TIGR02515). Members of this family are found in gene clusters associated with MSHA (mannose-sensitive hemagglutinin) and related pili, and appear to be the secretin of this pilus system. [Cell envelope, Surface structures].	2.65642e-76
NZ_CP046904.1\|WP_145879680.1\|6839934_6841095_+\|RluA-family-pseudouridine-synthase	gnl\|CDD\|223638	COG0564, RluA, Pseudouridylate synthases, 23S RNA-specific [Translation, ribosomal structure and biogenesis].	4.52839e-115
NZ_CP046904.1\|WP_145879696.1\|6833364_6834258_+\|AAA-family-ATPase	gnl\|CDD\|132060	TIGR03015, pepcterm_ATPase, putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems. [Protein fate, Protein and peptide secretion and trafficking].	3.67028e-68
NZ_CP046904.1\|WP_145879683.1\|6839132_6839936_-\|outer-membrane-protein-assembly-factor-BamD	gnl\|CDD\|274513	TIGR03302, OM_YfiO, outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). [Protein fate, Protein and peptide secretion and trafficking].	2.00062e-96
NZ_CP046904.1\|WP_145879665.1\|6845675_6846452_+\|NAD(P)H-dependent-oxidoreductase	gnl\|CDD\|225158	COG2249, MdaB, Putative NADPH-quinone reductase (modulator of drug activity B) [General function prediction only].	1.1127e-61
NZ_CP046904.1\|WP_145879764.1\|6846888_6848211_+\|beta-glucosidase	gnl\|CDD\|274539	TIGR03356, BGL, beta-galactosidase.	0
NZ_CP046904.1\|WP_145879703.1\|6829729_6830437_+\|MSHA-biogenesis-protein-MshI	gnl\|CDD\|237030	PRK12270, kgd, multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit.	0.00328607
NZ_CP046904.1\|WP_145879686.1\|6837893_6838661_+\|peroxide-stress-protein-YaaA	gnl\|CDD\|234999	PRK02101, PRK02101, peroxide stress protein YaaA.	1.87461e-133
NZ_CP046904.1\|WP_145879690.1\|6836159_6837347_-\|aminotransferase-class-I/II-fold-pyridoxal-phosphate-dependent-enzyme	gnl\|CDD\|181642	PRK09082, PRK09082, methionine aminotransferase; Validated.	0
NZ_CP046904.1\|WP_145879694.1\|6834254_6835301_+\|tetratricopeptide-repeat-protein	gnl\|CDD\|237865	PRK14951, PRK14951, DNA polymerase III subunits gamma and tau; Provisional.	7.3258e-10
NZ_CP046904.1\|WP_145879668.1\|6844681_6845590_-\|LysR-family-transcriptional-regulator	gnl\|CDD\|176150	cd08461, PBP2_DntR_like_3, The C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator similar to DntR, which is involved in the catabolism of dinitrotoluene; contains the type 2 periplasmic binding fold. This CD includes an uncharacterized LysR-type transcriptional regulator similar to DntR, NahR, and LinR, which are involved in the degradation of aromatic compounds. The transcription of the genes encoding enzymes involved in such degradation is regulated and expression of these enzymes is enhanced by inducers, which are either an intermediate in the metabolic pathway or compounds to be degraded. This substrate-binding domain shows significant homology to the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	6.23392e-89
NZ_CP046904.1\|WP_145879678.1\|6841091_6841883_+\|peptidoglycan-editing-factor-PgeF	gnl\|CDD\|182677	PRK10723, PRK10723, polyphenol oxidase.	5.31891e-104
NZ_CP046904.1\|WP_145879663.1\|6848292_6849570_+\|extracellular-solute-binding-protein	gnl\|CDD\|224567	COG1653, UgpB, ABC-type sugar transport system, periplasmic component [Carbohydrate transport and metabolism].	1.11397e-35
NZ_CP046904.1\|WP_145879692.1\|6835322_6836159_-\|metal-dependent-phosphohydrolase	gnl\|CDD\|225116	COG2206, COG2206, c-di-GMP phosphodiesterase class II (HD-GYP domain) [Signal transduction mechanisms].	2.68183e-07

>NZ_CP046904.1|WP_145879686.1|6837893_6838661_+|peroxide-stress-protein-YaaA
MLIVLSPAKSLDLDTPPTTDIATRPAFLDHSAQLIERMREFSPHELAELMDLSDALSTLNVARYASWTTDTAHARQAVMTFNGDVYDGLDARTMTPTQLDYTQGRVRILSGLYGLLRPLDLIHPHRLEMGTRLKNARGKDLYTFWGDLITDALNGVVAEQGAKWLVNCASEEYFKSVRPAKLAVPVITPVFEEYKNGKYKIISFYAKRARGMLARYAALHSITDPQELKKFDVDGYAFAPEASNDGTWVFRRKVA
>NZ_CP046904.1|WP_145879688.1|6837372_6837855_-|putative-toxin-antitoxin-system-toxin-component,-PIN-family
MIPALPPTLPTSSSIRIVIDTNVCLDLFVFRDPRWAALLAALESGAVEAVTRADCRDEYRIVLHYPHLPLDDSTRPASAERFDALIKVVAPPESGVRLPVCTDKDDQKFLEVARDAGARVLITKDKALLKLAKRLRNAGMFDVIPPEKWTLPAAPDAALE
>NZ_CP046904.1|WP_145879690.1|6836159_6837347_-|aminotransferase-class-I/II-fold-pyridoxal-phosphate-dependent-enzyme
MNDQQPTTPNSPTPHLPTRLPAVGTTVFTRMSALAQQHGAVNLGQGFPDFACDPRLVDMVADAMRAGHNQYPPMTGAPVLREAIAAKIARLYGHAYDVNTEITVTAGATQALTTAILCAVHPGDEAIVIEPAYDSYMPAIELAGGIVVPVAMTLDDAGYRVPWDQVQAAVTAKTRLIVVNTPHNPTGTVLRDADLQALADIVRGTDVLILSDEVYEHMVYDGERHASMSRHPVLAARSFVVSSFGKTYHTTGWKIGYVAAPAPLTAEFRKVHQYNVFSVNAPMQHGIAAYMADPAPYLELPAFYQKKRDLFRAGLAGSRFELLPADGTYFQCVRYGAISDLPESAFAEWLTSEIKVAAIPVSPFYRQARESGIVRFCFAKKDETLHSALERLARI
>NZ_CP046904.1|WP_145879692.1|6835322_6836159_-|metal-dependent-phosphohydrolase
MSAPGIDELEDPARLPPPSVLRGLNAVQRRLESMQESPAAESWRALARELLHALDLSHDVALACVLRNQIGGTYALRHSVETAVIAALTARHLRVRPVHLLTLTSAALALHTTGRHEAGPHTVRSAEAEHDWFTRQLLAHAPGHAPDEPVLATGARLLRMADRYCAGISARNYRRSLLPDDALARVLADAPDEGLADAFRREIGPFPPGTVVRLEGGETGVVLHRDGGQPEVLCLRDAAGRALPVALPRRAPIACALGDDDCDVRVSMKQVWGPLASL
>NZ_CP046904.1|WP_145879694.1|6834254_6835301_+|tetratricopeptide-repeat-protein
MSLINKMLQDLDARGGAPRAATGDVRPVAPDRTARTARTAIAAGAGVGALIVAVGAGVWYYVNRTPAAPVPVVAAPPVAAPVPTPVPKSVPESPPAPAAPAADPTVAEAAPVPAPEPAPRAAPEAVPAEAAAPKPRRERKAAAEPRPAPVADAMPAQGVTTTPQQRAENAYRRGLAAVQDGRVQDAIAALEQAVQAEPRHEAARQTLVGLLIENGRVDDAIRQAALGLGINANQPQLAMVLARLQLEHGGPAVETLRRTLPHATDNAAYMAFLAGVLQKQRRYAEAAEQYEAALRLQPKSGVWWMGLGIARQGGQLPGARDAYLKAKAAGLTPELQEFVERKLAQLDS
>NZ_CP046904.1|WP_145879696.1|6833364_6834258_+|AAA-family-ATPase
MYESHFGLAEVPFSITPDTSFFFGSPHSQEALNTLLVAARSGEGFIKITGEVGTGKTLLCRKFMATLGDEFMTAYVPNPYLEPRALMLAVADELEIALPRDVDQHQLVKSLTIRLLELAARGKHVVLCVDEAQALPTESLEALRLLTNLETEKRKLLQIVLFGQPELNAHLADPKIRQLAQRITFHYHLGALSRDDLDYYLAHRLRVAGFTGARLFSQRAVRRIYRATGGIPRLVNIVAHKALMLAYGEGRQLVEKRHVALAAGDTLGARAPLRWPWMAGLAALAAAACGITVALTR
>NZ_CP046904.1|WP_145879699.1|6831595_6833365_+|pilus-(MSHA-type)-biogenesis-protein-MshL
MRTLITLAAAAVLAGQLAGCDTAGRRTTYDTIRGDVRDAAAKAAAQRDRAPDPVEAALLPPAPALAAQLPKARAVLDERFNVALNNVPAQQFFNSIATGTRYNMLVSPEVTGTLSANLKDVTIFEALDAVRELYGYDYKVEGNRIYIRPLTIQTRMFKVNYLTGNRRGISNVRVSSTSINSVPRNNQNGQNGQSGTGTADQNQQQNENGQQEGGVRSVQDDASNVKTTSEANFWVELRAALEAIVGAGDDGRKVIITPQSGVVLVRAMPPQLRAVDEYLKATRLAVERQVILEAKILEVQLNSGFQSGVNWAAFRQAGNSAGGVGIIGPGGVLTTRDAAGAFPQRNGNGLSGTPGSNLVSAADALGTMFGLAFQTSNFSAMISFLESQGTVHVLSSPRIATMNNQKAVLKIGTDEFFVTGISTTTNSNVTGNTVTPNVIVQPFFSGVLLDVTPQIDEEGHIMLHVHPSVSNVTTVNKTVSLGTAGSVNLPLAASSTSEMDSMVRGRDGEIVAIGGLMRQATTSDQSQLPGVGSVPVLGALFRNKDSVSQKRELVVLIKPTIVDDAGSMTQEMRDTVRRIEQLDPNNRGK
>NZ_CP046904.1|WP_145879766.1|6831230_6831578_+|MSHA-biogenesis-protein-MshK
MLAALLAPLLVHGGVAAQTADPTQPPPGLMPRAEGEPEPGPPPGPELQSVLVSREPGGRRVAVISGEMVRQGSRWQGALVEKVGENEVVLRRGKARQVLRLYPKPAAAATRTEQQ
>NZ_CP046904.1|WP_145879701.1|6830433_6831225_+|hypothetical-protein
MKAMWLKWAARIDALSLRERAMAGAAAVAAVIFIVYMGFIEPAHTQERTLRAAILQQRAQLAGIDVEIAQKQAAAQADPDAAARKRLAVLRTENDALRATLRNAQRGLVQPNRMSALLQQMVQQNGRLKLVSLKTLPPAGTTDGRFADGGAPAEMGPAPAAGPVLPVTPLTTTPPGVAPAPLSAPPSPATAASVAEEPLLYRHGVRIVLQGAYADMVAYMRALERLPVQVFWGKAALDATEHDKTTLTLTLYTLSLDEKWIAL
>NZ_CP046904.1|WP_145879703.1|6829729_6830437_+|MSHA-biogenesis-protein-MshI
MSQQINLFNPRFRKEKRYLTAPALALMVGAALFASVAVAVAARSRVTVLETESARLQAALREAEVRKQTTLSALVPRAKDATVDQQLARAEQEHRALRGVADILEQNRVGDPRGYSAYFEALARTHVSGLWLTGVDVDGSAADIGLRGRALRAELLPGYLGSLAREPALQGKAFGSVEIARPAPVTVPAAAGATAVDPAPAAAPAAPAAPVQVVPPYIEFSLRSSGDKPAAGGAR
>NZ_CP046904.1|WP_145879683.1|6839132_6839936_-|outer-membrane-protein-assembly-factor-BamD
MQKKLKVVAASVVLFSLSACGLLPEQADETKGWSATKLYSEAKEELAGQHYERAIQLFEKLEASYPFGVYAQQAQMEVAYAYYKAQDQAQALAAVERFIKLHPNHPNVDYMYYLRGLINFNDQIGLLNFIYEQDPAERDPKATREAFAAFKALVDKFPNSKYTPDAIDRMKYLINAMATYEVYVSRYYYRRGAYLAAANRAQDAIRDYRDSPSIEEALWIMIRSYDKLGNVTLRDDALRVFKLNYPNSKFLDEGAPKPERRWWKFWG
>NZ_CP046904.1|WP_145879680.1|6839934_6841095_+|RluA-family-pseudouridine-synthase
MFACKKTFKQDTTWLIIADGNAVILNREPNPAEQLPDTDFETDFEGEFIADDAGPADPLAPIELQLTPDVCGERLDKIVAKLVPQFSRGRLQSWIEEGFVTVDGKPAKVRATVYGDEKIVVLPQAAPEDVAFTPEPIDIDVVYEDDNLIVINKPAGLVVHPGAGNWSGTLLNGLLHRWPQLGGVPRAGIVHRLDKDTSGLMVIGKDLPTQTDLVRQLQARSVKREYWALVWGTPRLSGTVDAPMGRHQRDRVKMAVSTGFGAKPAITHYERLVSGELDRRPVSLVQCRLETGRTHQIRVHMAHLGYPLVGDYVYGKPHLTGVFHRQALQARRLGLVHPVTGEHCEWQIPLADDFRALLDEAGIEEPDETALHGDDNFDEDDYDDEE
>NZ_CP046904.1|WP_145879678.1|6841091_6841883_+|peptidoglycan-editing-factor-PgeF
MNAKNATQWLLPDWPDVPDNVGVLCTTRRGGVSPPPYDDGQGKGGLNLGTHVGDSPKCVERNRDILRAELPAEPAWLTQVHGTVVLDAAAINPEADPPVADASYARERGIVCAILTADCLPVLLCDVKGKIVGAAHAGWRGLADGVLQRTVTAMRDAGAGELMAWLGPAIGPNRFEVGQEVLDTFLQRGTMEEASVRDAFTPIAARPGKYHADLYALARVALYGMDVPRVWGGDFCTVSNSGRFYSYRRDGVTGRQASLIWLR
>NZ_CP046904.1|WP_145879676.1|6841885_6842077_-|hypothetical-protein
MLIVALAWIYVVLLMALTEPTIVAGIMTFLLYCALPLGILFYVTGGRRRKRRRAAARRDTPEP
>NZ_CP046904.1|WP_145879673.1|6842124_6843888_+|class-I-poly(R)-hydroxyalkanoic-acid-synthase
MNMPDAQTMASWMNPEQWKAWMPPASFPANFPAGFPGNLPESFAAHLPPNFPGLAMLRDAGATFRPDVLETLKNEYMAELGALWQQVLEGKTPEIRDRRFAGDAWKANPITAFNAAAYLLNAKFLLAMADAVEATPHQKQKIRFAVQQLVDAMSPANFLATNPEAQQKLIETKGESLTRGLKNMLADMQKGHISLSDEKAFEVGRNLATTEGQVVYENPLFQLLQYKPLTETVKQRPLLMVPPCINKFYILDLQPENSLVRYAVEQGNTVFLVSWRNPDASLAKTSWDDYTEQGVIEAIRVVQEITKEPRLNTLGFCVGGTLLSTALAVLAARGEQPAASVTLLTTFLDFSDTGVLNVFVDEPQVQLREQALAHGGLMPGRDLASTFSSLRPNDLVWNYVQSNYLKGNEPPPFDLLYWNSDSTNLPGPMFCWYLRNTYLENKLKDPGRVKVGGVPVDLGTIDAPAFIYGSREDHIVPWTSAYGSMNILNPGKREANRFVLGASGHIAGVINAPSKNKRSHWISDGRPEDPEAWFAGATEQPGSWWPQWAAFLAEHGGKDVKARTKLGSAKYKPIEPAPGRYVKEKAD
>NZ_CP046904.1|WP_145879671.1|6844116_6844677_+|polyhydroxyalkanoate-synthesis-repressor-PhaR
MSSVKKTAERLIKKYPNRRLYDTQTSSYITLTDVKQLVLDNEPFTVVDAKSNEDLTRSILLQIILEEEASGAPMFSTDVLAQIIRYYGHAMQGMMGTYLEKNVQAFTDIQRRLTQSAANFDGKTFSPEMWTQFMNVQAPIMQGMMNNYIDQSKSLFVQMQEQMQNQSKNLFGAFPFAVPPAPTDKK
>NZ_CP046904.1|WP_145879668.1|6844681_6845590_-|LysR-family-transcriptional-regulator
MINLLRLDLNLLVTLDVLLEEHNVTRAAARLHLSQPSISVQLARLRDMLKDPLLLPGPRGMRPTARAEELRAPLRQALESLEQAVAPSAPFDPAAASQTWCVAASDYGESTVVLPALAGLRAAAPGTRLAVVEMHPARIARQAEQGDIDLAFHTVAGSPPGLRRRTLFAERYVLVGRAGHPRLKRRPTLAQFCALDFAIVSPDGGGFEGVTDAALAQVGAQRRVVLSVPHFLFVASAVAQTDLVAMLPQRLARQLQGSQDLRVVEAPVDVPGYEMAMLWHERLHRDPAHRWLREHVAAAVRD
>NZ_CP046904.1|WP_145879665.1|6845675_6846452_+|NAD(P)H-dependent-oxidoreductase
MNVLYVYAHPEPRSLNGALKDFALRHLRAAGHEVQVSDLYAMNWKATVDAADSKEPPERGRFDPSHASQRAFQNGWQSDDIVREQEKLRWADVVIFQFPLWWFSMPAIMKGWIERVYAYGFAYGVGEHSDRHWGDRYGEGTLAGKRAMLVVTTGGWESHYSPRGINGSLDELLFPIQHGILYYPGFDVLPPYVVYRAGKMNEERYATVRDGLAARLDTLATTAPIPFRRQNGGDYAIPALTLHDDLARGEHGLRIHTR
>NZ_CP046904.1|WP_145879764.1|6846888_6848211_+|beta-glucosidase
MWRKDFLLGVATAAYQIEGAVDEDGRLPSIWDTFSATPGKVLHGDTGAVACDHYHRWRDDVELIASLGVEAYRLSIAWPRVMDAAGRPNETGIAFYRNLLQALREKGIQTSVTLYHWDLPQHLEDAGGWRNRDTAYRFAEYADLMSRELAGLVDFWSTLNEPWCSAMHGYGTGHHAPGRTSVVEANQAMHHLLLGHGLALQALRRNDPASQKGIVINVGRGTTDGDTAADRRAAELFEMQHNDWVLDPLLKCRYPAALYEELWQDAAPPVHDGDLALIAAPLDFLGINYYFRTNVRADDNGGYVEVPLEGVERTQMGWEVHPDGLRDLLVGFHGRYANLPPIYITENGMACDDEVVDGQVVDGQRIAFLNRHLAAVDQAVKAGVDVRGYFIWSLMDNFEWAFGYERRFGIVHVDYATQRRTVKRSAQLVRDFLAQRRGRP
>NZ_CP046904.1|WP_145879663.1|6848292_6849570_+|extracellular-solute-binding-protein
MNKAIPGAVAAALVLPLVLPLALPPAQAVQPPPAAPLRATVSHWWTSGGESAAIRQFADAFTRAGGQWIDQAVAGADQSRASTINRIVGGNAPVAAQFNTSKQFRDIVDQGLLNNVDDVAAQGSWDKVLPQTIIDVIKINGHYYAAPVDIHMPAWFFYSKAAYAKAGIKAEPKSWDEFVAQLDKLKKAGLIPLAFGGQVWQEKILFDAIFALVGGSELYLKIYRDRDIKAVHSPAFRDVLVKFKALRGYTDPGSPGRNWNDATALVVSGRAGVQIMGDWAKGEFTSAGQVAGKDFGCFPGFGAKPPYMVAGDAFVFPKTAKPQIVKAQKLLAAVMTAPGPQAEFSARKGSIPIRPDVDMTKLDLCARMGIEIMQDKSRQLPNAEMLLDPDLNGALQDVLTNYWNRNETPERAQQAFAQAIKDNTW

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NZ_CP046904_9	9.1\|5486297\|31\|NZ_CP046904\|CRISPRCasFinder	5486297-5486327	31	NZ_CP046904.1	2243077-2243107	2	0.935
NZ_CP046904_9	9.1\|5486297\|31\|NZ_CP046904\|CRISPRCasFinder	5486297-5486327	31	NZ_CP046904.1	2436993-2437023	2	0.935
NZ_CP046904_9	9.1\|5486297\|31\|NZ_CP046904\|CRISPRCasFinder	5486297-5486327	31	NZ_CP046904.1	2501472-2501502	2	0.935
NZ_CP046904_9	9.1\|5486297\|31\|NZ_CP046904\|CRISPRCasFinder	5486297-5486327	31	NZ_CP046904.1	3659982-3660012	2	0.935
NZ_CP046904_9	9.1\|5486297\|31\|NZ_CP046904\|CRISPRCasFinder	5486297-5486327	31	NZ_CP046904.1	4491638-4491668	2	0.935

1. spacer 9.1|5486297|31|NZ_CP046904|CRISPRCasFinder matches to position: 2243077-2243107, mismatch: 2, identity: 0.935

ccctgtggggtcagaccccagcgggacacgg	CRISPR spacer
ccctctggggtcagaccccagagggacacgg	Protospacer
**** **************** *********

2. spacer 9.1|5486297|31|NZ_CP046904|CRISPRCasFinder matches to position: 2436993-2437023, mismatch: 2, identity: 0.935

ccctgtggggtcagaccccagcgggacacgg	CRISPR spacer
ccctctggggtcagaccccagagggacacgg	Protospacer
**** **************** *********

3. spacer 9.1|5486297|31|NZ_CP046904|CRISPRCasFinder matches to position: 2501472-2501502, mismatch: 2, identity: 0.935

ccctgtggggtcagaccccagcgggacacgg	CRISPR spacer
ccctctggggtcagaccccagagggacacgg	Protospacer
**** **************** *********

4. spacer 9.1|5486297|31|NZ_CP046904|CRISPRCasFinder matches to position: 3659982-3660012, mismatch: 2, identity: 0.935

ccctgtggggtcagaccccagcgggacacgg	CRISPR spacer
ccttctggggtcagaccccagcgggacacgg	Protospacer
**.* **************************

5. spacer 9.1|5486297|31|NZ_CP046904|CRISPRCasFinder matches to position: 4491638-4491668, mismatch: 2, identity: 0.935

ccctgtggggtcagaccccagcgggacacgg	CRISPR spacer
ccctctggggtcagaccccagagggacacgg	Protospacer
**** **************** *********

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP046904_6	6.1\|3140818\|35\|NZ_CP046904\|CRISPRCasFinder	3140818-3140852	35	NZ_CP043441	Cupriavidus campinensis strain MJ1 plasmid unnamed1, complete sequence	934423-934457	10	0.714

1. spacer 6.1|3140818|35|NZ_CP046904|CRISPRCasFinder matches to NZ_CP043441 (Cupriavidus campinensis strain MJ1 plasmid unnamed1, complete sequence) position: , mismatch: 10, identity: 0.714

tcccgccggacctgtggtccggctgcctggcacca	CRISPR spacer
cgctgccggacctgttgtccggccgcctggacttc	Protospacer
. *.*********** *******.******  ..

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

4068149 : 4120083

Pseudomonas_phage(12.5%)

integrase,protease,holin,transposase

attL 4071412:4071431|attR 4130877:4130896

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_145877367.1\|4068149_4068659_+\|protease	ClpXP protease specificity-enhancing factor	A0A1S5R3H3	Pseudomonas_phage	2.0e-18	47.4
WP_145877370.1\|4068903_4069521_+	cytochrome c biogenesis heme-transporting ATPase CcmA	A0A2H4UU96	Bodo_saltans_virus	2.3e-05	24.9
WP_145877372.1\|4069514_4070183_+	heme exporter protein CcmB	NA	NA	NA	NA
WP_145877374.1\|4070191_4070950_+	heme ABC transporter permease	NA	NA	NA	NA
WP_145877377.1\|4070946_4071099_+	heme exporter protein CcmD	NA	NA	NA	NA
WP_145877379.1\|4071095_4071548_+	cytochrome c maturation protein CcmE	NA	NA	NA	NA
4071412:4071431	attL	NA	NA	NA	NA
WP_145877381.1\|4071528_4073517_+	heme lyase CcmF/NrfE family subunit	NA	NA	NA	NA
WP_145877383.1\|4073519_4074047_+	DsbE family thiol:disulfide interchange protein	NA	NA	NA	NA
WP_145877385.1\|4074039_4074477_+	cytochrome c-type biogenesis protein CcmH	NA	NA	NA	NA
WP_145877388.1\|4074473_4075706_+	c-type cytochrome biogenesis protein CcmI	NA	NA	NA	NA
WP_145877390.1\|4075792_4075957_+	nitrate reductase	NA	NA	NA	NA
WP_145877392.1\|4075959_4076229_+	glutamate synthase	NA	NA	NA	NA
WP_145877394.1\|4076225_4078724_+	nitrate reductase catalytic subunit NapA	NA	NA	NA	NA
WP_145877396.1\|4078735_4079206_+	nitrate reductase cytochrome c-type subunit	NA	NA	NA	NA
WP_145877399.1\|4079215_4079794_+	cytochrome c3 family protein	NA	NA	NA	NA
WP_145877402.1\|4079898_4080228_+	cupin domain-containing protein	NA	NA	NA	NA
WP_145877405.1\|4080231_4082052_-	hypothetical protein	NA	NA	NA	NA
WP_158206774.1\|4082048_4082195_-	hypothetical protein	NA	NA	NA	NA
WP_145877408.1\|4082191_4083211_-	glycosyltransferase	A8CG95	Salmonella_phage	5.8e-54	36.1
WP_145877410.1\|4083159_4083576_-	GtrA family protein	NA	NA	NA	NA
WP_145877412.1\|4083651_4084701_-	NAD(P)H-dependent glycerol-3-phosphate dehydrogenase	NA	NA	NA	NA
WP_145877414.1\|4084702_4085146_-	SH3 domain-containing protein	NA	NA	NA	NA
WP_145877416.1\|4085240_4085717_-	protein-export chaperone SecB	NA	NA	NA	NA
WP_145877418.1\|4085858_4086119_-	glutaredoxin 3	V9QKN6	Rhizobium_phage	1.3e-10	40.5
WP_145877420.1\|4086135_4086537_-	rhodanese-like domain-containing protein	NA	NA	NA	NA
WP_145877422.1\|4086651_4087398_+	2,3-diphosphoglycerate-dependent phosphoglycerate mutase	NA	NA	NA	NA
WP_145877425.1\|4087405_4088860_+	peptidoglycan DD-metalloendopeptidase family protein	NA	NA	NA	NA
WP_145877428.1\|4088870_4090391_+	PDZ domain-containing protein	A0A0R6PIZ1	Moraxella_phage	3.3e-21	25.8
WP_145877430.1\|4090387_4091134_+	molybdopterin-synthase adenylyltransferase MoeB	NA	NA	NA	NA
WP_145877432.1\|4091255_4091699_+	type II secretion system major pseudopilin GspG	NA	NA	NA	NA
WP_145877434.1\|4091670_4092171_+	type II secretion system minor pseudopilin GspH	NA	NA	NA	NA
WP_145877437.1\|4092175_4092544_+	type II secretion system minor pseudopilin GspI	NA	NA	NA	NA
WP_145877439.1\|4092540_4093158_+	prepilin-type N-terminal cleavage/methylation domain-containing protein	NA	NA	NA	NA
WP_145877441.1\|4093154_4094123_+	type II secretion system minor pseudopilin GspK	NA	NA	NA	NA
WP_145877444.1\|4094138_4095368_+	general secretion pathway protein GspL	NA	NA	NA	NA
WP_145877514.1\|4095373_4095883_+	type II secretion system protein M	NA	NA	NA	NA
WP_145877446.1\|4095879_4096653_+	type II secretion system protein GspN	NA	NA	NA	NA
WP_145877448.1\|4096652_4098827_+	type II secretion system secretin GspD	NA	NA	NA	NA
WP_145877450.1\|4098833_4100252_+	type II secretion system ATPase GspE	NA	NA	NA	NA
WP_145877452.1\|4100264_4101485_+	type II secretion system inner membrane protein GspF	NA	NA	NA	NA
WP_158206775.1\|4102149_4102860_-	PEP-CTERM sorting domain-containing protein	NA	NA	NA	NA
WP_145877454.1\|4102990_4103194_-	hypothetical protein	NA	NA	NA	NA
WP_145877456.1\|4103203_4104541_-\|protease	ATP-dependent protease ATPase subunit HslU	A0A191ZC11	Erwinia_phage	7.4e-41	28.7
WP_145877460.1\|4104551_4105088_-\|protease	ATP-dependent protease subunit HslV	NA	NA	NA	NA
WP_145877462.1\|4105161_4106472_-	hypothetical protein	NA	NA	NA	NA
WP_145877464.1\|4106586_4107036_-	RNA polymerase-binding protein DksA	NA	NA	NA	NA
WP_145877467.1\|4107131_4108181_-	GTP-binding protein	NA	NA	NA	NA
WP_145877470.1\|4108257_4109211_-\|integrase	tyrosine-type recombinase/integrase	A0A1B1SGM4	Mycobacterium_phage	2.4e-09	30.7
WP_145877472.1\|4109212_4109884_-	DUF484 family protein	NA	NA	NA	NA
WP_158206887.1\|4110063_4110996_+\|transposase	IS1595 family transposase	NA	NA	NA	NA
WP_145876716.1\|4111104_4112163_-	porin	NA	NA	NA	NA
WP_145876718.1\|4112587_4114030_+	sel1 repeat family protein	NA	NA	NA	NA
WP_145876720.1\|4114042_4114906_-	diaminopimelate epimerase	NA	NA	NA	NA
WP_145876723.1\|4114902_4115799_-	lipid A biosynthesis acyltransferase	NA	NA	NA	NA
WP_145876725.1\|4115795_4116653_-	lysophospholipid acyltransferase family protein	NA	NA	NA	NA
WP_145876727.1\|4116843_4118013_+	methionine adenosyltransferase	A0A2H4PQS6	Staphylococcus_phage	1.7e-121	61.2
WP_145876729.1\|4118244_4119660_+	adenosylhomocysteinase	NA	NA	NA	NA
WP_145876731.1\|4119732_4120083_+\|holin	phage holin family protein	NA	NA	NA	NA
4130877:4130896	attR	NA	NA	NA	NA

DBSCAN-SWA_2

6736556 : 6752622

Pseudomonas_phage(46.15%)

terminase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_145880204.1\|6736556_6736757_-	hypothetical protein	A0A2I6PHW0	Pseudomonas_phage	8.2e-05	57.1
WP_145880206.1\|6736780_6737059_-	hypothetical protein	NA	NA	NA	NA
WP_158206869.1\|6737060_6737222_-	hypothetical protein	NA	NA	NA	NA
WP_145880208.1\|6737225_6738140_-	hypothetical protein	NA	NA	NA	NA
WP_145880211.1\|6738168_6738594_-	recombinase	E5AGF7	Erwinia_phage	1.8e-25	51.1
WP_145880213.1\|6738590_6739238_-	YqaJ viral recombinase family protein	A0A0S2SY31	Pseudomonas_phage	4.1e-29	39.1
WP_145880215.1\|6739230_6739977_-	phage recombination protein Bet	A0A0H5BBT9	Pseudomonas_phage	7.5e-67	76.1
WP_145880217.1\|6740133_6740397_-	hypothetical protein	NA	NA	NA	NA
WP_158206870.1\|6740504_6741872_-	hypothetical protein	A0A0U3TGV3	Pseudomonas_phage	6.0e-06	60.5
WP_145881972.1\|6742018_6742231_-	hypothetical protein	NA	NA	NA	NA
WP_158206871.1\|6742694_6743438_-	helix-turn-helix domain-containing protein	W6MVG5	Pseudomonas_phage	1.9e-22	32.9
WP_145881967.1\|6743577_6743799_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_145881965.1\|6743852_6744125_+	hypothetical protein	NA	NA	NA	NA
WP_145881963.1\|6744193_6744415_+	hypothetical protein	NA	NA	NA	NA
WP_145881961.1\|6744587_6744959_+	hypothetical protein	NA	NA	NA	NA
WP_145881959.1\|6744955_6745450_+	hypothetical protein	Q3HR00	Burkholderia_phage	1.0e-24	39.6
WP_145881958.1\|6745452_6746340_+	hypothetical protein	I3PUZ7	Vibrio_phage	5.0e-54	47.0
WP_145881956.1\|6746329_6747106_+	hypothetical protein	U6C6D0	Ralstonia_phage	3.5e-27	35.0
WP_145881954.1\|6747151_6747943_+	SPFH domain-containing protein	NA	NA	NA	NA
WP_145881952.1\|6747991_6748642_+	ninG protein	A0A0U1VZM0	Pseudomonas_phage	2.4e-37	46.4
WP_145881950.1\|6748638_6749190_+	hypothetical protein	K4F5N6	Cronobacter_phage	1.0e-12	38.7
WP_145881948.1\|6749186_6749567_+	hypothetical protein	NA	NA	NA	NA
WP_145881946.1\|6749628_6749919_+	hypothetical protein	NA	NA	NA	NA
WP_145881943.1\|6750769_6751261_+\|terminase	terminase	Q775B8	Bordetella_phage	7.6e-28	47.7
WP_145881978.1\|6751329_6752622_+	DNA packaging protein	A0A1B1IQC4	uncultured_Mediterranean_phage	8.5e-26	35.0

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP046904

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

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Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection