CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP046857	Vibrio fluvialis strain 2015AW-0233 chromosome 1, complete sequence	0 crisprs	DinG,csx1,cas3,csa3,DEDDh,WYL	0	0	7	0
NZ_CP046858	Vibrio fluvialis strain 2015AW-0233 chromosome 2, complete sequence	1 crisprs	cas3,DEDDh,csa3,WYL,cas1,cas3f,cas8f,cas5f,cas7f,cas6f	0	17	2	0

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

84548 : 93624

Pseudoalteromonas_phage(16.67%)

tRNA,transposase

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_158124302.1\|84548_85154_+	DUF4326 domain-containing protein	A0A223LH87	Pseudoalteromonas_phage	1.5e-12	51.4
WP_158124303.1\|85279_85468_-	hypothetical protein	NA	NA	NA	NA
WP_158124304.1\|85604_86782_-\|transposase	IS3 family transposase	Q716C2	Shigella_phage	1.2e-122	69.2
WP_020330404.1\|87846_89724_-	RNA polymerase sigma factor RpoD	A0A2I7SAT0	Vibrio_phage	5.5e-34	30.6
WP_020330405.1\|89821_91567_-	DNA primase	A0A1S5RG58	Helicobacter_phage	4.5e-46	31.7
WP_020330407.1\|91685_92129_-	GatB/YqeY domain-containing protein	A0A292GL36	Xanthomonas_phage	4.3e-22	46.5
WP_001145625.1\|92157_92373_-	30S ribosomal protein S21	NA	NA	NA	NA
WP_020330418.1\|92604_93624_+\|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	A0A0R6PI74	Moraxella_phage	8.2e-109	57.7

DBSCAN-SWA_2

99756 : 110858

uncultured_Mediterranean_phage(25.0%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_020330427.1\|99756_100524_+	5'/3'-nucleotidase SurE	A0A1B1ITZ2	uncultured_Mediterranean_phage	9.1e-68	52.8
WP_020429685.1\|100516_101143_+	protein-L-isoaspartate(D-aspartate) O-methyltransferase	A0A1B1IU40	uncultured_Mediterranean_phage	2.0e-36	53.3
WP_020429687.1\|101142_102078_+	murein hydrolase activator NlpD	I3PV79	Clostridium_phage	2.3e-12	32.8
WP_020429689.1\|102149_103136_+	RNA polymerase sigma factor RpoS	F4YCU2	Synechococcus_phage	1.3e-34	34.5
WP_158124307.1\|103200_105762_-	DNA mismatch repair protein MutS	A0A1V0SC35	Catovirus	2.6e-34	23.6
WP_158124308.1\|105846_106335_+	nicotinamide-nucleotide amidase	B5TK85	Pseudomonas_phage	5.1e-24	44.5
WP_020330433.1\|106507_107560_+	recombinase RecA	A0A2D1GPX2	Mycobacterium_phage	4.8e-112	60.7
WP_047459347.1\|107629_108088_+	recombination regulator RecX	NA	NA	NA	NA
WP_158124309.1\|108275_110858_+\|tRNA	alanine--tRNA ligase	A0A1V0SK38	Klosneuvirus	1.5e-77	37.0

DBSCAN-SWA_3

322149 : 329197

Faustovirus(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_020330643.1\|322149_323364_+	IscS subfamily cysteine desulfurase	A0A0H3TPH2	Faustovirus	1.1e-30	30.5
WP_020330644.1\|323400_323784_+	Fe-S cluster assembly scaffold IscU	A0A218MKD1	uncultured_virus	9.1e-53	77.4
WP_020330645.1\|323843_324167_+	iron-sulfur cluster assembly protein IscA	A0A2H4N7N5	Lake_Baikal_phage	5.5e-27	54.2
WP_020330646.1\|324234_324750_+	co-chaperone HscB	NA	NA	NA	NA
WP_158124388.1\|324771_326625_+	Fe-S protein assembly chaperone HscA	A0A0N9QXN8	Chrysochromulina_ericina_virus	6.5e-112	40.8
WP_020330648.1\|326638_326977_+	ISC system 2Fe-2S type ferredoxin	NA	NA	NA	NA
WP_158124390.1\|327032_327227_+	Fe-S cluster assembly protein IscX	NA	NA	NA	NA
WP_100268069.1\|327403_328696_+	aminopeptidase PepB	Q6GYZ8	Mycoplasma_phage	1.0e-34	40.3
WP_020330651.1\|328765_329197_+	nucleoside-diphosphate kinase	K7YW26	Megavirus	2.6e-19	39.8

DBSCAN-SWA_4

1056341 : 1064198

Vibrio_phage(90.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_055453527.1\|1056341_1056683_-	DUF2523 domain-containing protein	R9TRT6	Vibrio_phage	1.8e-44	75.2
WP_158124970.1\|1056691_1058140_-	hypothetical protein	G8IRU9	Vibrio_phage	2.3e-24	45.1
WP_055453529.1\|1058271_1058487_-	hypothetical protein	R9TRU5	Vibrio_phage	8.8e-13	63.1
WP_081035198.1\|1058515_1058743_-	hypothetical protein	R9TMT7	Vibrio_phage	3.4e-15	57.3
WP_055453530.1\|1058752_1059091_-	DUF1293 domain-containing protein	Q858R2	Vibrio_phage	1.5e-43	74.1
WP_158124972.1\|1059063_1060179_-	replication initiation factor family protein	Q64EV8	Vibrio_phage	1.5e-167	77.7
WP_055453532.1\|1060168_1060369_-	hypothetical protein	C3W4P3	Vibrio_phage	2.1e-24	76.9
WP_061056520.1\|1060371_1060629_-	hypothetical protein	NA	NA	NA	NA
WP_158124974.1\|1060632_1061214_-	3'-5' exonuclease	W6ASW5	Vibrio_phage	7.6e-35	42.4
WP_158125716.1\|1061394_1061763_+	hypothetical protein	Q9MCC3	Vibrio_phage	1.5e-44	77.7
WP_158124976.1\|1062467_1064198_-	response regulator	A0A1V0SGX0	Hokovirus	5.6e-49	34.5

DBSCAN-SWA_5

1733011 : 1769813

Vibrio_phage(22.22%)

integrase,plate,tail

attL 1732541:1732599|attR 1771133:1771191

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1732541:1732599	attL	NA	NA	NA	NA
WP_020433371.1\|1733011_1734193_-\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_156102025.1\|1734214_1734409_-	hypothetical protein	NA	NA	NA	NA
WP_158125246.1\|1734611_1735127_-	PadR family transcriptional regulator	A0A1S6L1S5	Vibrio_phage	1.2e-10	52.1
WP_158125247.1\|1735160_1735406_-	hypothetical protein	NA	NA	NA	NA
WP_020433376.1\|1735383_1735653_-	hypothetical protein	NA	NA	NA	NA
WP_158125248.1\|1735649_1735946_-	DUF3850 domain-containing protein	C9E2N9	Enterococcus_phage	5.1e-11	55.1
WP_158125249.1\|1735949_1736513_-	3'-5' exoribonuclease	K7PM77	Enterobacteria_phage	1.9e-51	58.1
WP_158125250.1\|1736515_1736809_-	hypothetical protein	A2I2Z5	Vibrio_virus	2.2e-30	66.3
WP_158125251.1\|1736817_1737096_-	hypothetical protein	NA	NA	NA	NA
WP_158125252.1\|1737105_1739865_-	hypothetical protein	A0A1S5NPU9	Burkholderia_phage	1.1e-259	48.8
WP_152467905.1\|1739830_1740133_-	hypothetical protein	NA	NA	NA	NA
WP_020433385.1\|1740116_1740416_-	hypothetical protein	NA	NA	NA	NA
WP_081878688.1\|1740408_1740711_-	hypothetical protein	NA	NA	NA	NA
WP_158125253.1\|1740921_1741623_-\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_020432400.1\|1741651_1742134_-	hypothetical protein	NA	NA	NA	NA
WP_020432401.1\|1742332_1742518_-	hypothetical protein	NA	NA	NA	NA
WP_158125254.1\|1742718_1743543_+	transcriptional regulator	NA	NA	NA	NA
WP_158125255.1\|1743805_1744765_+	hypothetical protein	NA	NA	NA	NA
WP_158125256.1\|1744784_1745792_-	hypothetical protein	R9TNM7	Vibrio_phage	2.4e-20	30.7
WP_158125257.1\|1745782_1745989_-\|tail	phage tail protein	A0A0M4RTN6	Salmonella_phage	2.6e-06	43.5
WP_158125258.1\|1745991_1746384_-\|tail	phage tail protein	K7R6Q8	Vibrio_phage	9.4e-21	37.5
WP_158125259.1\|1746393_1748526_-	hypothetical protein	A0A2P9JZK0	Alteromonadaceae_phage	2.2e-79	41.4
WP_158125260.1\|1748602_1748959_-\|tail	phage tail assembly protein	NA	NA	NA	NA
WP_020432412.1\|1748967_1749480_-\|tail	phage major tail tube protein	Q7M2A5	Pseudomonas_phage	7.2e-13	31.3
WP_158125261.1\|1749489_1750650_-\|tail	phage tail protein	A0A1B2LRR3	Wolbachia_phage	2.7e-71	38.6
WP_158125262.1\|1750738_1751266_-	hypothetical protein	R9TMQ2	Vibrio_phage	1.3e-38	72.6
WP_158125263.1\|1751269_1752499_-\|tail	phage tail protein	A0A2I8TVA9	Erwinia_phage	7.8e-13	25.4
WP_042483718.1\|1752495_1753143_-\|tail	phage tail protein I	Q19UQ4	Mannheimia_phage	4.5e-20	32.3
WP_158125264.1\|1753142_1754012_-\|plate	baseplate assembly protein	D5LGZ3	Escherichia_phage	1.4e-40	35.5
WP_158125741.1\|1754008_1754356_-	dTDP-glucose pyrophosphorylase	K4I3Z7	Acidithiobacillus_phage	5.2e-07	40.9
WP_158125265.1\|1754363_1754996_-\|plate	phage baseplate assembly protein V	NA	NA	NA	NA
WP_158125266.1\|1754988_1755528_-	hypothetical protein	NA	NA	NA	NA
WP_042483730.1\|1755537_1756035_-	hypothetical protein	NA	NA	NA	NA
WP_158125267.1\|1756027_1756633_-	hypothetical protein	NA	NA	NA	NA
WP_158125268.1\|1756635_1756941_-	chromosome partitioning protein ParA	NA	NA	NA	NA
WP_158125269.1\|1756930_1757527_-	hypothetical protein	A0A1D9CA16	Salinivibrio_phage	5.2e-55	55.2
WP_158125270.1\|1757581_1758166_-	ABC transporter ATPase	NA	NA	NA	NA
WP_158125271.1\|1758238_1760812_-	hypothetical protein	NA	NA	NA	NA
WP_158125272.1\|1760917_1761133_-	hypothetical protein	NA	NA	NA	NA
WP_158125273.1\|1761302_1761731_+	hypothetical protein	NA	NA	NA	NA
WP_158125274.1\|1761747_1761936_+	hypothetical protein	NA	NA	NA	NA
WP_158125275.1\|1762251_1763340_-	hypothetical protein	M5AAH5	Nitratiruptor_phage	2.2e-06	31.4
WP_158125276.1\|1763345_1764728_-	hypothetical protein	NA	NA	NA	NA
WP_158125277.1\|1764724_1766323_-	hypothetical protein	NA	NA	NA	NA
WP_158125278.1\|1766315_1767281_-	hypothetical protein	NA	NA	NA	NA
WP_042483761.1\|1767280_1767973_-	hypothetical protein	NA	NA	NA	NA
WP_038157580.1\|1768521_1768770_-	molecular chaperone GroES	NA	NA	NA	NA
WP_158125279.1\|1768766_1769813_-\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
1771133:1771191	attR	NA	NA	NA	NA

DBSCAN-SWA_6

2047886 : 2054429

Staphylococcus_phage(66.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004724909.1\|2047886_2048357_-	6,7-dimethyl-8-ribityllumazine synthase	A0A2H4PQS3	Staphylococcus_phage	1.9e-31	47.3
WP_020431928.1\|2048550_2049660_-	bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II	A0A2H4PQS2	Staphylococcus_phage	4.8e-62	39.0
WP_158125354.1\|2049701_2050355_-	riboflavin synthase	A0A2H4PQS5	Staphylococcus_phage	1.7e-35	39.5
WP_158125355.1\|2050358_2051468_-	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	A0A2H4PQS8	Staphylococcus_phage	2.2e-43	35.6
WP_020331649.1\|2051481_2051931_-	transcriptional regulator NrdR	NA	NA	NA	NA
WP_024373553.1\|2052033_2053284_-	glutamate-5-semialdehyde dehydrogenase	A0A1X9I5D4	Streptococcus_phage	8.9e-97	48.2
WP_038157346.1\|2053295_2054429_-	glutamate 5-kinase	A0A1X9I5D0	Streptococcus_phage	6.2e-65	42.0

DBSCAN-SWA_7

3088240 : 3152748

Vibrio_phage(26.09%)

capsid,plate,integrase,protease,tail,portal,terminase,head,tRNA

attL 3086772:3086789|attR 3166443:3166460

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
3086772:3086789	attL	NA	NA	NA	NA
WP_158125641.1\|3088240_3089353_-\|tRNA	tRNA epoxyqueuosine(34) reductase QueG	NA	NA	NA	NA
WP_020332624.1\|3089564_3090029_+\|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	NA	NA	NA	NA
WP_158125761.1\|3090109_3091741_+	LysM peptidoglycan-binding domain-containing protein	A0A067ZJB6	Vibrio_phage	1.4e-14	29.2
WP_158125642.1\|3091753_3093694_+	DNA mismatch repair endonuclease MutL	A0A1B2LRQ5	Wolbachia_phage	1.5e-58	30.5
WP_020332628.1\|3093690_3094623_+\|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	NA	NA	NA	NA
WP_020332629.1\|3094818_3095082_+	RNA chaperone Hfq	NA	NA	NA	NA
WP_020433626.1\|3095123_3096413_+	GTPase HflX	NA	NA	NA	NA
WP_020332631.1\|3096458_3097649_+\|protease	FtsH protease activity modulator HflK	NA	NA	NA	NA
WP_020332632.1\|3097651_3098635_+\|protease	protease modulator HflC	NA	NA	NA	NA
WP_158125643.1\|3098706_3098895_+	DUF2065 family protein	NA	NA	NA	NA
WP_020332635.1\|3098911_3099139_-	SlyX family protein	NA	NA	NA	NA
WP_020332636.1\|3099141_3100122_-	PQQ-binding-like beta-propeller repeat protein	NA	NA	NA	NA
WP_158125644.1\|3100261_3101050_+	FKBP-type peptidyl-prolyl cis-trans isomerase	NA	NA	NA	NA
WP_020332638.1\|3101228_3101951_+	transcriptional regulator	NA	NA	NA	NA
WP_020332639.1\|3101947_3102340_+	sulfurtransferase complex subunit TusD	NA	NA	NA	NA
WP_154184817.1\|3102336_3102693_+	sulfurtransferase complex subunit TusC	NA	NA	NA	NA
WP_047462507.1\|3102707_3102983_+	sulfurtransferase complex subunit TusB	NA	NA	NA	NA
WP_014203960.1\|3103166_3103541_+	30S ribosomal protein S12	NA	NA	NA	NA
WP_014203959.1\|3103643_3104114_+	30S ribosomal protein S7	NA	NA	NA	NA
WP_020332642.1\|3104189_3106286_+	elongation factor G	A0A1S5SF82	Streptococcus_phage	3.8e-52	26.0
WP_075989032.1\|3106393_3107578_+	elongation factor Tu	M4M9V7	Vibrio_phage	4.4e-05	60.5
WP_020332718.1\|3107864_3108053_+	bacterioferritin-associated ferredoxin	NA	NA	NA	NA
WP_020433766.1\|3108122_3108599_+	bacterioferritin	NA	NA	NA	NA
WP_004723737.1\|3108795_3109164_+	30S ribosomal protein S6	NA	NA	NA	NA
WP_086027247.1\|3109172_3109475_+	primosomal replication protein N	NA	NA	NA	NA
WP_000090472.1\|3109490_3109718_+	30S ribosomal protein S18	NA	NA	NA	NA
WP_020332714.1\|3109751_3110201_+	50S ribosomal protein L9	NA	NA	NA	NA
WP_020332713.1\|3110276_3111044_-	DUF481 domain-containing protein	NA	NA	NA	NA
WP_020332712.1\|3111216_3112626_+	replicative DNA helicase	A0A1B0VG30	Salmonella_phage	1.2e-182	71.8
WP_152490521.1\|3112594_3113725_+	alanine racemase	NA	NA	NA	NA
WP_020332710.1\|3113735_3114155_-	YjbQ family protein	NA	NA	NA	NA
WP_055453706.1\|3114440_3116093_+	glucose-6-phosphate isomerase	NA	NA	NA	NA
WP_020433733.1\|3116180_3116642_-	chemotaxis protein CheX	NA	NA	NA	NA
WP_061056948.1\|3116666_3117116_-	zinc uptake transcriptional repressor Zur	NA	NA	NA	NA
WP_158125645.1\|3117531_3119418_-	hypothetical protein	NA	NA	NA	NA
WP_080871245.1\|3119446_3119554_-\|tail	GpE family phage tail protein	NA	NA	NA	NA
WP_158125646.1\|3119589_3119877_-\|tail	phage tail assembly protein	R4JJY8	Burkholderia_phage	4.8e-06	39.5
WP_158125647.1\|3119860_3120568_-	hypothetical protein	NA	NA	NA	NA
WP_020329244.1\|3120578_3120944_-	hypothetical protein	NA	NA	NA	NA
WP_158125648.1\|3120947_3122081_-\|tail	phage tail protein	C9DGP7	Escherichia_phage	9.0e-48	38.7
WP_158125649.1\|3122077_3122260_-	DUF2635 domain-containing protein	NA	NA	NA	NA
WP_158125650.1\|3122260_3122800_-	virion morphogenesis protein	NA	NA	NA	NA
WP_158125651.1\|3122796_3123261_-\|tail	phage tail protein	NA	NA	NA	NA
WP_158125652.1\|3123260_3123710_-\|head	head completion/stabilization protein	NA	NA	NA	NA
WP_158125653.1\|3123818_3124856_-\|capsid	phage major capsid protein, P2 family	A0A0U4K5I9	Pseudomonas_phage	3.0e-66	42.9
WP_158125654.1\|3124898_3125711_-\|capsid	phage capsid protein	A0A2H4J928	uncultured_Caudovirales_phage	7.0e-18	35.4
WP_158125655.1\|3125881_3127606_+\|terminase	terminase	E5E3X0	Burkholderia_phage	9.3e-113	41.4
WP_158125656.1\|3127616_3128582_+\|portal	phage portal protein	A0A0M3LS06	Mannheimia_phage	4.8e-58	41.2
WP_158125657.1\|3129049_3129463_+	hypothetical protein	NA	NA	NA	NA
WP_055452444.1\|3129638_3129857_+	hypothetical protein	NA	NA	NA	NA
WP_081035136.1\|3129875_3129983_+	DUF3265 domain-containing protein	NA	NA	NA	NA
WP_158125658.1\|3129997_3130429_+	aldehyde-activating protein	NA	NA	NA	NA
WP_158125762.1\|3130455_3130596_+	DUF3265 domain-containing protein	NA	NA	NA	NA
WP_140229250.1\|3130570_3130909_-	hypothetical protein	NA	NA	NA	NA
WP_004726819.1\|3131180_3131432_-	hypothetical protein	A0A1D9C9R8	Salinivibrio_phage	1.2e-08	45.2
WP_004726817.1\|3131422_3131653_-	hypothetical protein	NA	NA	NA	NA
WP_158125659.1\|3131663_3132080_-	glycoside hydrolase family protein	A0A1Q1PW74	Pseudoalteromonas_phage	5.0e-28	52.2
WP_158125763.1\|3132197_3133019_-	hypothetical protein	NA	NA	NA	NA
WP_158125660.1\|3133123_3134218_-\|tail	phage tail protein	A9DEM1	Yersinia_phage	5.5e-18	38.7
WP_158125661.1\|3134214_3134694_-	hypothetical protein	NA	NA	NA	NA
WP_158125662.1\|3134675_3135722_-	hypothetical protein	A0A1E1GE19	Vibrio_phage	4.0e-10	24.5
WP_158125663.1\|3135718_3136105_-	hypothetical protein	NA	NA	NA	NA
WP_158125664.1\|3136101_3136677_-\|plate	phage baseplate assembly protein V	NA	NA	NA	NA
WP_158125665.1\|3136669_3137608_-\|tail	phage tail protein	NA	NA	NA	NA
WP_158125666.1\|3137604_3138795_-	hypothetical protein	NA	NA	NA	NA
WP_158125667.1\|3139580_3139940_-	hypothetical protein	A0A1S6KZW3	Salmonella_phage	1.1e-12	38.0
WP_004726797.1\|3140185_3140437_-	ogr/Delta-like zinc finger family protein	NA	NA	NA	NA
WP_158125668.1\|3140446_3143077_-	replication endonuclease	A0A166YHE2	Vibrio_phage	1.3e-299	59.4
WP_158125669.1\|3143093_3143636_-	DNA methyltransferase	U3PDF3	Vibrio_phage	5.8e-85	83.4
WP_044362472.1\|3143632_3143929_-	hypothetical protein	NA	NA	NA	NA
WP_158125670.1\|3144001_3144331_-	hypothetical protein	NA	NA	NA	NA
WP_158125671.1\|3144342_3144891_-	transcriptional regulator	A0A2I7RNI1	Vibrio_phage	3.1e-38	44.5
WP_158125672.1\|3145117_3145387_-	pyocin activator protein PrtN	A0A1L5C290	Pseudoalteromonas_phage	4.8e-16	44.4
WP_158125673.1\|3145539_3146460_+	hypothetical protein	F1C5C2	Cronobacter_phage	3.7e-15	36.9
WP_158125674.1\|3146475_3146895_+	type II toxin-antitoxin system PemK/MazF family toxin	NA	NA	NA	NA
WP_158125675.1\|3147169_3148240_-	DNA (cytosine-5-)-methyltransferase	M1PSQ0	Streptococcus_phage	1.5e-36	34.6
WP_158125676.1\|3148240_3150331_-	ATP-binding protein	NA	NA	NA	NA
WP_158125677.1\|3150545_3151613_-\|integrase	tyrosine-type recombinase/integrase	A0A1D9C9R5	Salinivibrio_phage	5.9e-142	66.0
WP_158125678.1\|3151734_3152748_+\|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	NA	NA	NA	NA
3166443:3166460	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_CP046858

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NZ_CP046858_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP046858_1

1284038-1286226

TypeI-F

I-F

Consensus_repeat	Method
GTTCACTGCCGTACAGGCAGCTTAGAAA	PILER-CR
GTTCACTGCCGTACAGGCAGCTTAGAAA	CRISPRCasFinder
GTTCACTGCCGTACAGGCAGCTTAGAAA	CRT

36 spacers

cas6f,cas7f,cas5f,cas8f,cas3f,cas1,WYL

The CRISPR arrays of NZ_CP046858_1

>merge|NZ_CP046858|1|1284038-1286226|PILER-CR,CRISPRCasFinder,CRT
GTTCACTGCCGTACAGGCAGCTTAGAAAAGTAACAGAAGAACCAAAAGCAGACTCTTTCCGTTCACTGCCGTACAGGCAGCTTAGAAAGAAACGGAGTAATCAGGCATCATGTCGTAAAAGTTCACTGCCGTACAGGCAGCTTAGAAATGCTCTTTGATGTATTTGCGGGAACCGTCAGCGTTCACTGCCGTACAGGCAGCTTAGAAATTTCAGTGAATCTGAATGGCCCAGCATGAAATTGTTCACTGCCGTACAGGCAGCTTAGAAAAAACGCTCGGCGGGTACGCTTTCCCCGGCCTCGTTCACTGCCGTACAGGCAGCTTAGAAACTGAGTGGCGTAACTACTAGCAAAAGAAATTGGTTCACTGCCGTACAGGCAGCTTAGAAAAGTAAAATGTCGCGCTCGGGTAAGTCACGCGCGTTCACTGCCGTACAGGCAGCTTAGAAATGTTGAATGATTTTCTGATCTCACCTTGATATGTTCACTGCCGTACAGGCAGCTTAGAAAGCTATCTACCATCATCCAAGCCAACGCGTTTTGTTCACTGCCGTACAGGCAGCTTAGAAATTGACGGAATCAAGATGGCGTGAATCTATAATGTTCACTGCCGTACAGGCAGCTTAGAAAAAACGCCAAAACCTAGCGACAAACCGTCGACTGTTCACTGCCGTACAGGCAGCTTAGAAACCGCACCTTTTACAATGCCGTTGACTCGGTAGGTTCACTGCCGTACAGGCAGCTTAGAAACTTACAGAACGTGTACTGTGGATTGCTGAAACGTTCACTGCCGTACAGGCAGCTTAGAAATTGACGCGTGTCTGTTCGAGACTTAAATCAGAGTTCACTGCCGTACAGGCAGCTTATAAACGCTTCACTATTATTTCCCCAGAAACATTAATGTTCACTGCCGTACAGGCAGCTTAGAAAGTCTTTCGTCCGTCAAGCAGCGCTTTCACCATGTTCACTGCCGTACAGGCAGCTTAGAAAATTCATGGATGATGAGCAGTACATCACTGGCAGTTCACTGCCGTACAGGCAGCTTAGAAAACAAGACGACGGCGGACAGTTCTGAGCCTAAAGTTCACTGCCGTACAGGCAGCTTAGAAAGTCATGGTGTAGACGAGTTCGTTGTTACTTACGTTCACTGCCGTACAGGCAGCTTAGAAAAAGTGAAAACCCGCCATACACACATTTGGCAAGTTCACTGCCGTACAGGCAGCTTAGAAATGAACCTATCCCGAGCCCTTCATAAACGTATTGTTCACTGCCGTACAGGCAGCTTAGAAAGCTTTAAAGAAACCGGCCACGGCGCGATCCACGTTCACTGCCGTACAGGCAGCTTAGAAATGAAAGACTCGATGCAAATCGCGCGCGTATCGGTTCACTGCCGTACAGGCAGCTTAGAAAGCTAACGTCTATTGAGGTTGCAATTGATTCATGTTCACTGCCGTACAGGCAGCTTAGAAATTGATGTGCTCCACAACATGAGATTTAGTTACGTTCACTGCCGTACAGGCAGCTTAGAAAGTGTAGCAGAATGGCTGCACGATCGTCGTCACGTTCACTGCCGTACAGGCAGCTTAGAAAATAAATCGCCTAATTCGACATCGCCAATTTTAGTTCACTGCCGTACAGGCAGCTTAGAAAAGTTCTGGCATTGACTCCATAAACTGATCGTAGTTCACTGCCGTACAGGCAGCTTAGAAAAATAGACCACTCTTTAGAAAACGCATTATCTAGTTCACTGCCGTACAGGCAGCTTAGAAAAATAGACCACTCTTTAGAAAACGCATTATCTAGTTCACTGCCGTACAGGCAGCTTAGAAAAATAGCTATGGCCAGAACCCAGCAGACTACCGGTTCACTGCCGTACAGGCAGCTTAGAAAGTTATCGATGTATGCGTTAAATGCGGATTCTTGTTCACTGCCGTACAGGCAGCTTAGAAATTGTTCGAGGGCTTGCAGAATATCCTGAGTTCGTTCACTGCCGTACAGGCAGCTTAGAAAAAACACTGCACCCCAAAAATCTGATGGCCTCTGTTCACTGCCGTACAGGCAGCTTAGAAATTTGACGTAAATGCGCAGAAGATGACGATATTGTTCACTGCCGTACAGGCAGCTTAGAAATCGACGAAGTACTTTACCCCAACTGCCCGCTAGCTCACTGCTACACAGGCAAGGTAGAAT

>NZ_CP046858|1|1|1284038-1286166|PILER-CR
GTTCACTGCCGTACAGGCAGCTTAGAAA	AGTAACAGAAGAACCAAAAGCAGACTCTTTCC
GTTCACTGCCGTACAGGCAGCTTAGAAA	GAAACGGAGTAATCAGGCATCATGTCGTAAAA
GTTCACTGCCGTACAGGCAGCTTAGAAA	TGCTCTTTGATGTATTTGCGGGAACCGTCAGC
GTTCACTGCCGTACAGGCAGCTTAGAAA	TTTCAGTGAATCTGAATGGCCCAGCATGAAATT
GTTCACTGCCGTACAGGCAGCTTAGAAA	AAACGCTCGGCGGGTACGCTTTCCCCGGCCTC
GTTCACTGCCGTACAGGCAGCTTAGAAA	CTGAGTGGCGTAACTACTAGCAAAAGAAATTG
GTTCACTGCCGTACAGGCAGCTTAGAAA	AGTAAAATGTCGCGCTCGGGTAAGTCACGCGC
GTTCACTGCCGTACAGGCAGCTTAGAAA	TGTTGAATGATTTTCTGATCTCACCTTGATAT
GTTCACTGCCGTACAGGCAGCTTAGAAA	GCTATCTACCATCATCCAAGCCAACGCGTTTT
GTTCACTGCCGTACAGGCAGCTTAGAAA	TTGACGGAATCAAGATGGCGTGAATCTATAAT
GTTCACTGCCGTACAGGCAGCTTAGAAA	AAACGCCAAAACCTAGCGACAAACCGTCGACT
GTTCACTGCCGTACAGGCAGCTTAGAAA	CCGCACCTTTTACAATGCCGTTGACTCGGTAG
GTTCACTGCCGTACAGGCAGCTTAGAAA	CTTACAGAACGTGTACTGTGGATTGCTGAAAC
GTTCACTGCCGTACAGGCAGCTTAGAAA	TTGACGCGTGTCTGTTCGAGACTTAAATCAGA
GTTCACTGCCGTACAGGCAGCTTATAAA	CGCTTCACTATTATTTCCCCAGAAACATTAAT
GTTCACTGCCGTACAGGCAGCTTAGAAA	GTCTTTCGTCCGTCAAGCAGCGCTTTCACCAT
GTTCACTGCCGTACAGGCAGCTTAGAAA	ATTCATGGATGATGAGCAGTACATCACTGGCA
GTTCACTGCCGTACAGGCAGCTTAGAAA	ACAAGACGACGGCGGACAGTTCTGAGCCTAAA
GTTCACTGCCGTACAGGCAGCTTAGAAA	GTCATGGTGTAGACGAGTTCGTTGTTACTTAC
GTTCACTGCCGTACAGGCAGCTTAGAAA	AAGTGAAAACCCGCCATACACACATTTGGCAA
GTTCACTGCCGTACAGGCAGCTTAGAAA	TGAACCTATCCCGAGCCCTTCATAAACGTATT
GTTCACTGCCGTACAGGCAGCTTAGAAA	GCTTTAAAGAAACCGGCCACGGCGCGATCCAC
GTTCACTGCCGTACAGGCAGCTTAGAAA	TGAAAGACTCGATGCAAATCGCGCGCGTATCG
GTTCACTGCCGTACAGGCAGCTTAGAAA	GCTAACGTCTATTGAGGTTGCAATTGATTCAT
GTTCACTGCCGTACAGGCAGCTTAGAAA	TTGATGTGCTCCACAACATGAGATTTAGTTAC
GTTCACTGCCGTACAGGCAGCTTAGAAA	GTGTAGCAGAATGGCTGCACGATCGTCGTCAC
GTTCACTGCCGTACAGGCAGCTTAGAAA	ATAAATCGCCTAATTCGACATCGCCAATTTTA
GTTCACTGCCGTACAGGCAGCTTAGAAA	AGTTCTGGCATTGACTCCATAAACTGATCGTA
GTTCACTGCCGTACAGGCAGCTTAGAAA	AATAGACCACTCTTTAGAAAACGCATTATCTA
GTTCACTGCCGTACAGGCAGCTTAGAAA	AATAGACCACTCTTTAGAAAACGCATTATCTA
GTTCACTGCCGTACAGGCAGCTTAGAAA	AATAGCTATGGCCAGAACCCAGCAGACTACCG
GTTCACTGCCGTACAGGCAGCTTAGAAA	GTTATCGATGTATGCGTTAAATGCGGATTCTT
GTTCACTGCCGTACAGGCAGCTTAGAAA	TTGTTCGAGGGCTTGCAGAATATCCTGAGTTC
GTTCACTGCCGTACAGGCAGCTTAGAAA	AAACACTGCACCCCAAAAATCTGATGGCCTCT
GTTCACTGCCGTACAGGCAGCTTAGAAA	TTTGACGTAAATGCGCAGAAGATGACGATATT
GTTCACTGCCGTACAGGCAGCTTAGAAA

>NZ_CP046858|1|1|1284038-1286226|CRISPRCasFinder
GTTCACTGCCGTACAGGCAGCTTAGAAA	AGTAACAGAAGAACCAAAAGCAGACTCTTTCC
GTTCACTGCCGTACAGGCAGCTTAGAAA	GAAACGGAGTAATCAGGCATCATGTCGTAAAA
GTTCACTGCCGTACAGGCAGCTTAGAAA	TGCTCTTTGATGTATTTGCGGGAACCGTCAGC
GTTCACTGCCGTACAGGCAGCTTAGAAA	TTTCAGTGAATCTGAATGGCCCAGCATGAAATT
GTTCACTGCCGTACAGGCAGCTTAGAAA	AAACGCTCGGCGGGTACGCTTTCCCCGGCCTC
GTTCACTGCCGTACAGGCAGCTTAGAAA	CTGAGTGGCGTAACTACTAGCAAAAGAAATTG
GTTCACTGCCGTACAGGCAGCTTAGAAA	AGTAAAATGTCGCGCTCGGGTAAGTCACGCGC
GTTCACTGCCGTACAGGCAGCTTAGAAA	TGTTGAATGATTTTCTGATCTCACCTTGATAT
GTTCACTGCCGTACAGGCAGCTTAGAAA	GCTATCTACCATCATCCAAGCCAACGCGTTTT
GTTCACTGCCGTACAGGCAGCTTAGAAA	TTGACGGAATCAAGATGGCGTGAATCTATAAT
GTTCACTGCCGTACAGGCAGCTTAGAAA	AAACGCCAAAACCTAGCGACAAACCGTCGACT
GTTCACTGCCGTACAGGCAGCTTAGAAA	CCGCACCTTTTACAATGCCGTTGACTCGGTAG
GTTCACTGCCGTACAGGCAGCTTAGAAA	CTTACAGAACGTGTACTGTGGATTGCTGAAAC
GTTCACTGCCGTACAGGCAGCTTAGAAA	TTGACGCGTGTCTGTTCGAGACTTAAATCAGA
GTTCACTGCCGTACAGGCAGCTTATAAA	CGCTTCACTATTATTTCCCCAGAAACATTAAT
GTTCACTGCCGTACAGGCAGCTTAGAAA	GTCTTTCGTCCGTCAAGCAGCGCTTTCACCAT
GTTCACTGCCGTACAGGCAGCTTAGAAA	ATTCATGGATGATGAGCAGTACATCACTGGCA
GTTCACTGCCGTACAGGCAGCTTAGAAA	ACAAGACGACGGCGGACAGTTCTGAGCCTAAA
GTTCACTGCCGTACAGGCAGCTTAGAAA	GTCATGGTGTAGACGAGTTCGTTGTTACTTAC
GTTCACTGCCGTACAGGCAGCTTAGAAA	AAGTGAAAACCCGCCATACACACATTTGGCAA
GTTCACTGCCGTACAGGCAGCTTAGAAA	TGAACCTATCCCGAGCCCTTCATAAACGTATT
GTTCACTGCCGTACAGGCAGCTTAGAAA	GCTTTAAAGAAACCGGCCACGGCGCGATCCAC
GTTCACTGCCGTACAGGCAGCTTAGAAA	TGAAAGACTCGATGCAAATCGCGCGCGTATCG
GTTCACTGCCGTACAGGCAGCTTAGAAA	GCTAACGTCTATTGAGGTTGCAATTGATTCAT
GTTCACTGCCGTACAGGCAGCTTAGAAA	TTGATGTGCTCCACAACATGAGATTTAGTTAC
GTTCACTGCCGTACAGGCAGCTTAGAAA	GTGTAGCAGAATGGCTGCACGATCGTCGTCAC
GTTCACTGCCGTACAGGCAGCTTAGAAA	ATAAATCGCCTAATTCGACATCGCCAATTTTA
GTTCACTGCCGTACAGGCAGCTTAGAAA	AGTTCTGGCATTGACTCCATAAACTGATCGTA
GTTCACTGCCGTACAGGCAGCTTAGAAA	AATAGACCACTCTTTAGAAAACGCATTATCTA
GTTCACTGCCGTACAGGCAGCTTAGAAA	AATAGACCACTCTTTAGAAAACGCATTATCTA
GTTCACTGCCGTACAGGCAGCTTAGAAA	AATAGCTATGGCCAGAACCCAGCAGACTACCG
GTTCACTGCCGTACAGGCAGCTTAGAAA	GTTATCGATGTATGCGTTAAATGCGGATTCTT
GTTCACTGCCGTACAGGCAGCTTAGAAA	TTGTTCGAGGGCTTGCAGAATATCCTGAGTTC
GTTCACTGCCGTACAGGCAGCTTAGAAA	AAACACTGCACCCCAAAAATCTGATGGCCTCT
GTTCACTGCCGTACAGGCAGCTTAGAAA	TTTGACGTAAATGCGCAGAAGATGACGATATT
GTTCACTGCCGTACAGGCAGCTTAGAAA	TCGACGAAGTACTTTACCCCAACTGCCCGCTA
GCTCACTGCTACACAGGCAAGGTAGAAT

>NZ_CP046858|1|1|1284038-1286226|CRT
GTTCACTGCCGTACAGGCAGCTTAGAAA	AGTAACAGAAGAACCAAAAGCAGACTCTTTCC
GTTCACTGCCGTACAGGCAGCTTAGAAA	GAAACGGAGTAATCAGGCATCATGTCGTAAAA
GTTCACTGCCGTACAGGCAGCTTAGAAA	TGCTCTTTGATGTATTTGCGGGAACCGTCAGC
GTTCACTGCCGTACAGGCAGCTTAGAAA	TTTCAGTGAATCTGAATGGCCCAGCATGAAATT
GTTCACTGCCGTACAGGCAGCTTAGAAA	AAACGCTCGGCGGGTACGCTTTCCCCGGCCTC
GTTCACTGCCGTACAGGCAGCTTAGAAA	CTGAGTGGCGTAACTACTAGCAAAAGAAATTG
GTTCACTGCCGTACAGGCAGCTTAGAAA	AGTAAAATGTCGCGCTCGGGTAAGTCACGCGC
GTTCACTGCCGTACAGGCAGCTTAGAAA	TGTTGAATGATTTTCTGATCTCACCTTGATAT
GTTCACTGCCGTACAGGCAGCTTAGAAA	GCTATCTACCATCATCCAAGCCAACGCGTTTT
GTTCACTGCCGTACAGGCAGCTTAGAAA	TTGACGGAATCAAGATGGCGTGAATCTATAAT
GTTCACTGCCGTACAGGCAGCTTAGAAA	AAACGCCAAAACCTAGCGACAAACCGTCGACT
GTTCACTGCCGTACAGGCAGCTTAGAAA	CCGCACCTTTTACAATGCCGTTGACTCGGTAG
GTTCACTGCCGTACAGGCAGCTTAGAAA	CTTACAGAACGTGTACTGTGGATTGCTGAAAC
GTTCACTGCCGTACAGGCAGCTTAGAAA	TTGACGCGTGTCTGTTCGAGACTTAAATCAGA
GTTCACTGCCGTACAGGCAGCTTATAAA	CGCTTCACTATTATTTCCCCAGAAACATTAAT
GTTCACTGCCGTACAGGCAGCTTAGAAA	GTCTTTCGTCCGTCAAGCAGCGCTTTCACCAT
GTTCACTGCCGTACAGGCAGCTTAGAAA	ATTCATGGATGATGAGCAGTACATCACTGGCA
GTTCACTGCCGTACAGGCAGCTTAGAAA	ACAAGACGACGGCGGACAGTTCTGAGCCTAAA
GTTCACTGCCGTACAGGCAGCTTAGAAA	GTCATGGTGTAGACGAGTTCGTTGTTACTTAC
GTTCACTGCCGTACAGGCAGCTTAGAAA	AAGTGAAAACCCGCCATACACACATTTGGCAA
GTTCACTGCCGTACAGGCAGCTTAGAAA	TGAACCTATCCCGAGCCCTTCATAAACGTATT
GTTCACTGCCGTACAGGCAGCTTAGAAA	GCTTTAAAGAAACCGGCCACGGCGCGATCCAC
GTTCACTGCCGTACAGGCAGCTTAGAAA	TGAAAGACTCGATGCAAATCGCGCGCGTATCG
GTTCACTGCCGTACAGGCAGCTTAGAAA	GCTAACGTCTATTGAGGTTGCAATTGATTCAT
GTTCACTGCCGTACAGGCAGCTTAGAAA	TTGATGTGCTCCACAACATGAGATTTAGTTAC
GTTCACTGCCGTACAGGCAGCTTAGAAA	GTGTAGCAGAATGGCTGCACGATCGTCGTCAC
GTTCACTGCCGTACAGGCAGCTTAGAAA	ATAAATCGCCTAATTCGACATCGCCAATTTTA
GTTCACTGCCGTACAGGCAGCTTAGAAA	AGTTCTGGCATTGACTCCATAAACTGATCGTA
GTTCACTGCCGTACAGGCAGCTTAGAAA	AATAGACCACTCTTTAGAAAACGCATTATCTA
GTTCACTGCCGTACAGGCAGCTTAGAAA	AATAGACCACTCTTTAGAAAACGCATTATCTA
GTTCACTGCCGTACAGGCAGCTTAGAAA	AATAGCTATGGCCAGAACCCAGCAGACTACCG
GTTCACTGCCGTACAGGCAGCTTAGAAA	GTTATCGATGTATGCGTTAAATGCGGATTCTT
GTTCACTGCCGTACAGGCAGCTTAGAAA	TTGTTCGAGGGCTTGCAGAATATCCTGAGTTC
GTTCACTGCCGTACAGGCAGCTTAGAAA	AAACACTGCACCCCAAAAATCTGATGGCCTCT
GTTCACTGCCGTACAGGCAGCTTAGAAA	TTTGACGTAAATGCGCAGAAGATGACGATATT
GTTCACTGCCGTACAGGCAGCTTAGAAA	TCGACGAAGTACTTTACCCCAACTGCCCGCTA
GCTCACTGCTACACAGGCAAGGTAGAAT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP046858.1\|WP_158126228.1\|1273685_1274159_-\|DNA-repair-protein-RadC	unknown	unknown	gnl\|CDD\|178801
NZ_CP046858.1\|WP_158126230.1\|1282201_1283233_+\|type-I-F-CRISPR-associated-protein-Csy3	cas7f	cd09677_cas7f_CAS-I-F	gnl\|CDD\|378222
NZ_CP046858.1\|WP_020433529.1\|1288269_1289760_+\|anaerobic-nitric-oxide-reductase-flavorubredoxin	unknown	unknown	gnl\|CDD\|235475
NZ_CP046858.1\|WP_104408442.1\|1274276_1274483_+\|AlpA-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225848
NZ_CP046858.1\|WP_061055676.1\|1280010_1281306_+\|type-I-F-CRISPR-associated-protein-Csy1	cas8f	cd09735_cas8f_CAS-I-F	gnl\|CDD\|378220
NZ_CP046858.1\|WP_020328502.1\|1291380_1292547_+\|methyl-accepting-chemotaxis-protein	unknown	unknown	gnl\|CDD\|214599
NZ_CP046858.1\|WP_158126233.1\|1295365_1297117_-\|sensor-histidine-kinase	unknown	unknown	gnl\|CDD\|182581
NZ_CP046858.1\|WP_158126229.1\|1281302_1282190_+\|type-I-F-CRISPR-associated-protein-Csy2	cas5f	pfam09614_cas5f_CAS-I-F	gnl\|CDD\|378221
NZ_CP046858.1\|WP_158126396.1\|1276642_1280011_+\|type-I-F-CRISPR-associated-helicase-Cas3	cas3f	cd09673_cas3f_CAS-I-F	gnl\|CDD\|187804
NZ_CP046858.1\|WP_158126395.1\|1274747_1275542_+\|WYL-domain-containing-protein	WYL	COG2378_WYL_CAS-I:CAS-III	gnl\|CDD\|225253
NZ_CP046858.1\|WP_044363207.1\|1294683_1295364_-\|two-component-system-response-regulator-NarL	unknown	unknown	gnl\|CDD\|182619
NZ_CP046858.1\|WP_158126231.1\|1286540_1288073_-\|nitric-oxide-reductase-transcriptional-regulator-NorR	unknown	unknown	gnl\|CDD\|235331
NZ_CP046858.1\|WP_044363199.1\|1289769_1290918_+\|NADH:flavorubredoxin-reductase-NorW	unknown	unknown	gnl\|CDD\|179902
NZ_CP046858.1\|WP_044364444.1\|1283242_1283881_+\|type-I-F-CRISPR-associated-endoribonuclease-Cas6/Csy4	cas6f	pfam09618_cas6f_CAS-I-F	gnl\|CDD\|187870
NZ_CP046858.1\|WP_044363265.1\|1297433_1298807_+\|NarK-family-nitrate/nitrite-MFS-transporter	unknown	unknown	gnl\|CDD\|184994
NZ_CP046858.1\|WP_020328501.1\|1290955_1291297_+\|DUF1971-domain-containing-protein	unknown	unknown	gnl\|CDD\|226142
NZ_CP046858.1\|WP_024374513.1\|1275656_1276646_+\|type-I-F-CRISPR-associated-endonuclease-Cas1	cas1	cd09718_cas1_CAS-I-F	gnl\|CDD\|132676
NZ_CP046858.1\|WP_020328481.1\|1273254_1273689_-\|DUF2787-domain-containing-protein	unknown	unknown	gnl\|CDD\|371323
NZ_CP046858.1\|WP_104965422.1\|1293980_1294628_+\|iron-sulfur-cluster-repair-di-iron-protein	unknown	unknown	gnl\|CDD\|225402
NZ_CP046858.1\|WP_158126232.1\|1292621_1293692_-\|CBS-domain-containing-protein	unknown	unknown	gnl\|CDD\|225979

Protein	Function_ID	Function_description	E-value
NZ_CP046858.1\|WP_158126228.1\|1273685_1274159_-\|DNA-repair-protein-RadC	gnl\|CDD\|178801	PRK00024, PRK00024, DNA repair protein RadC.	3.45647e-70
NZ_CP046858.1\|WP_158126230.1\|1282201_1283233_+\|type-I-F-CRISPR-associated-protein-Csy3	gnl\|CDD\|378222	pfam09615, Cas_Csy3, CRISPR-associated protein (Cas_Csy3). CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) is a widespread family of prokaryotic direct repeats with spacers of unique sequence between consecutive repeats. This entry, typified by YPO2463 of Yersinia pestis, is a CRISPR-associated (Cas) entry strictly associated with the Ypest subtype of CRISPR/Cas locus. It is designated Csy3, for CRISPR/Cas Subtype Ypest protein 3.	0
NZ_CP046858.1\|WP_020433529.1\|1288269_1289760_+\|anaerobic-nitric-oxide-reductase-flavorubredoxin	gnl\|CDD\|235475	PRK05452, PRK05452, anaerobic nitric oxide reductase flavorubredoxin; Provisional.	0
NZ_CP046858.1\|WP_104408442.1\|1274276_1274483_+\|AlpA-family-transcriptional-regulator	gnl\|CDD\|225848	COG3311, AlpA, Predicted transcriptional regulator [Transcription].	7.39078e-24
NZ_CP046858.1\|WP_061055676.1\|1280010_1281306_+\|type-I-F-CRISPR-associated-protein-Csy1	gnl\|CDD\|378220	pfam09611, Cas_Csy1, CRISPR-associated protein (Cas_Csy1). CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) is a widespread family of prokaryotic direct repeats with spacers of unique sequence between consecutive repeats. This entry, typified by YPO2465 of Yersinia pestis, is a CRISPR-associated (Cas) entry strictly associated with the Ypest subtype of CRISPR/Cas locus. It is designated Csy1, for CRISPR/Cas Subtype Ypest protein 1.	8.21979e-103
NZ_CP046858.1\|WP_020328502.1\|1291380_1292547_+\|methyl-accepting-chemotaxis-protein	gnl\|CDD\|214599	smart00283, MA, Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Thought to undergo reversible methylation in response to attractants or repellants during bacterial chemotaxis.	5.57838e-33
NZ_CP046858.1\|WP_158126233.1\|1295365_1297117_-\|sensor-histidine-kinase	gnl\|CDD\|182581	PRK10600, PRK10600, nitrate/nitrite two-component system sensor histidine kinase NarX.	1.58866e-141
NZ_CP046858.1\|WP_158126229.1\|1281302_1282190_+\|type-I-F-CRISPR-associated-protein-Csy2	gnl\|CDD\|378221	pfam09614, Cas_Csy2, CRISPR-associated protein (Cas_Csy2). CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) is a widespread family of prokaryotic direct repeats with spacers of unique sequence between consecutive repeats. This entry, typified by YPO2464 of Yersinia pestis, is a CRISPR-associated (Cas) entry strictly associated with the Ypest subtype of CRISPR/Cas locus. It is designated Csy2, for CRISPR/Cas Subtype Ypest protein 2.	1.8083e-150
NZ_CP046858.1\|WP_158126396.1\|1276642_1280011_+\|type-I-F-CRISPR-associated-helicase-Cas3	gnl\|CDD\|187804	cd09673, Cas3_Cas2_I-F, CRISPR/Cas system-associated protein Cas3/Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas3/Cas2 fusion; This protein includes both DEAH and HD motifs for helicase and N-terminal domain corresponding to Cas2 RNAse; signature gene for Type I and subtype I-F.	0
NZ_CP046858.1\|WP_158126395.1\|1274747_1275542_+\|WYL-domain-containing-protein	gnl\|CDD\|225253	COG2378, COG2378, Predicted transcriptional regulator [Transcription].	6.75122e-10
NZ_CP046858.1\|WP_044363207.1\|1294683_1295364_-\|two-component-system-response-regulator-NarL	gnl\|CDD\|182619	PRK10651, PRK10651, transcriptional regulator NarL; Provisional.	1.76712e-102
NZ_CP046858.1\|WP_158126231.1\|1286540_1288073_-\|nitric-oxide-reductase-transcriptional-regulator-NorR	gnl\|CDD\|235331	PRK05022, PRK05022, nitric oxide reductase transcriptional regulator NorR.	0
NZ_CP046858.1\|WP_044363199.1\|1289769_1290918_+\|NADH:flavorubredoxin-reductase-NorW	gnl\|CDD\|179902	PRK04965, PRK04965, NADH:flavorubredoxin reductase NorW.	0
NZ_CP046858.1\|WP_044364444.1\|1283242_1283881_+\|type-I-F-CRISPR-associated-endoribonuclease-Cas6/Csy4	gnl\|CDD\|187870	cd09739, Cas6_I-F, CRISPR/Cas system-associated RAMP superfamily protein Cas6f. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas6f is an endoribonuclease that generates crRNA; This family is specific for CRISPR/Cas system I-F subtype; Possesses RRM fold; also known as Csy4 family.	3.14813e-59
NZ_CP046858.1\|WP_044363265.1\|1297433_1298807_+\|NarK-family-nitrate/nitrite-MFS-transporter	gnl\|CDD\|184994	PRK15034, PRK15034, nitrate/nitrite transport protein NarU; Provisional.	0
NZ_CP046858.1\|WP_020328501.1\|1290955_1291297_+\|DUF1971-domain-containing-protein	gnl\|CDD\|226142	COG3615, TehB, Uncharacterized protein/domain, possibly involved in tellurite resistance [Inorganic ion transport and metabolism].	2.44859e-38
NZ_CP046858.1\|WP_024374513.1\|1275656_1276646_+\|type-I-F-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|132676	TIGR03637, cas1_YPEST, CRISPR-associated endonuclease Cas1, subtype I-F/YPEST. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the YPEST subtype of CRISPR/Cas system.	1.5252e-170
NZ_CP046858.1\|WP_020328481.1\|1273254_1273689_-\|DUF2787-domain-containing-protein	gnl\|CDD\|371323	pfam10980, DUF2787, Protein of unknown function (DUF2787). This bacterial family of proteins has no known function.	6.74195e-46
NZ_CP046858.1\|WP_104965422.1\|1293980_1294628_+\|iron-sulfur-cluster-repair-di-iron-protein	gnl\|CDD\|225402	COG2846, COG2846, Regulator of cell morphogenesis and NO signaling [Cell division and chromosome partitioning].	3.46261e-53
NZ_CP046858.1\|WP_158126232.1\|1292621_1293692_-\|CBS-domain-containing-protein	gnl\|CDD\|225979	COG3448, COG3448, CBS-domain-containing membrane protein [Signal transduction mechanisms].	2.14889e-54

>NZ_CP046858.1|WP_044364444.1|1283242_1283881_+|type-I-F-CRISPR-associated-endoribonuclease-Cas6/Csy4
MNYYQEITLLPDADIALGFLWQNVFQQVHIALVEHKVASNQSLVAVGFPDYRQAKFPLGAKLRLFAKEQATLEKLAIHRWLTRLEDYVHIKGIKPVPNDVTYVSFVRKQVKSPERIERDMQQKAELWAAKSGKPLVECLADLQQSKPTALCSLPFIYLHSQQTKQRSPEKNSKFPLFIQMQQQSTSQDGGFDCYGLSSKANGQSALATVPNF
>NZ_CP046858.1|WP_158126230.1|1282201_1283233_+|type-I-F-CRISPR-associated-protein-Csy3
MAKNNDTASVLAFEKKLVPSDGYLFGCQWETKAQATPLALQEKSVRGTISNRLKSAVKNDPAKLNAEVEKANLQRVDACALGQDHDTLKLHFTLKVLGGLAQPSACNNALFKQSYSTAVSKYITQYGCFELAKRYATNLANARFLWRNRVGAEEIEVQVKALNKEAEQAWTFNAKQFSTKHFDHNDSQINSLADRIAQALASETDHLMLQIDCYAKVGKAQEVYPSEELVLDKGNSKTKKSKILYAVNEHAAMHSQKIGNALRSIDTWYPDYASEEQSAGAIAIEPYGAVTNLGKAFRTPKDKQDFYTFFDKWARGESLPREEDEHYVMAVLARGGVFGESDK
>NZ_CP046858.1|WP_158126229.1|1281302_1282190_+|type-I-F-CRISPR-associated-protein-Csy2
MNVLILPHLKIHNANALSSPFTIGFPAMTAWLGFVHALERKLSQAGLSDLMLHSAAVVSHRCDVQTHKGEGDFVHSIIGTGNPLDKDGSRSAFIEEARCHLDVSLVIEWNGNEEQVQQPEFTEQLQAVIATMKVAGGDVLSIGKPSIKSVITEQDTAQVLRQLMPGYVLIERRDLILEAMKQGADALDALLGYLTVHHHCEQLEDQSVVWHSQRKTSGWIVPIATGFQGISPLGTAKNQRDPSVPHRFAESVVTLGEFVMAHKIKHLDDILWQYNPDLENGLYLCQQVNAINEHQ
>NZ_CP046858.1|WP_061055676.1|1280010_1281306_+|type-I-F-CRISPR-associated-protein-Csy1
MEGSRVLDPAIAAFFAERKEAWLKKNISAAMSDTEVLEKQQECEQNFLLDNWLPDAARRIGSRALTTHPSKFSHPSTGVGKTNIKDGTFVSPVLFEGNQRNDGFVRSGNVRFDLTDSVGDAGALAAEDFLRVTLSDGMSVLKHIESETKVARALLTVKGVDYEQLRSSFLAIKSTSEGISTNSKIKQVYFPVADQQYHLLSLLTHSGHLFELRQRLDALRFSNEANEARERKKVNRFHPVGYQETFGLTTIGFGGTKPANISVLNNKFAGKAHLLASIPPELTPRDIRLPRTDFFKESFTAWQAKEVLEALHRLFQTDYNNVNLRDGRDYRIQQYVDLVIEKMWQVRLFLEAYSGELSSALPLEQKIWLYPEFADLRHQEDEWLDKITRHIARGLINHYSRSKVITSPITLADQELLAIEKVVASNKENLR
>NZ_CP046858.1|WP_158126396.1|1276642_1280011_+|type-I-F-CRISPR-associated-helicase-Cas3
MMVTFVSQCEKNALKKTRRVLDAFANRIGDNTWQTLITEEGLLTVKKMLRQTASRSTAVSCHWIRSRSRSQFLWVVGNKKKFNAEGYVPVNSTEKDLLNSEFENDWKYLPLIKAITGMAALLHDWGKASLLFQEKLNPEIKNKHKGDPLRHEWISCLLFQQWISNQNHERLDEVWLNSLIDKGIDETCFNTNLLQKEKALAELPTATALIAWLIVSHHRLPLPKEKDLCDRQREVDNSSLSDLLARITPAWGYENRFDEYNALLPKCFEFPLGLLSNSSIWLAELKRRAKDLLHHLPLLDQAINDGSWRGILHHARLCLMLGDHYYSSQPNDHQWKTSIDLYANTDPSTKARKQKLDEHLVNVAKVAVNTVKLLPFFETEPLKATELGELAPKANTPKAFRWQDKAVRKINEWREHTEDKSQGYFVVNMASTGCGKTIANAKIMQALSEEGESLRFILALGLRTLTLQTGDEYKERLKLQESDLAVLIGSKAISELHKSGKAVEKDDIEPEQADAGSESLESLQDENDVLDWQGVLPEEELTTVLTKEKDRKLLYAPVLVCTIDHIMAATETKRGGRYILPCLRLMSSDLVIDEIDDFTGDDLIAIGRLVHLAGMLGRKVMISSATIPPDLALGLYNAYRQGWKVFAASRDRVSTVNCVYVDEFSADVQMVGCDDADLAAYEAFQQRFVSKRVDKLKQQVAKRKADIIPCIKQNDQPLEQQYFEIVKQAILAKHQHHNTLEPESQSRVSFGVVRVANIQPCVELTQYLLSCDWPADTEVRCMAYHSQQVLLLRHEQEKHLDEVLKRKEKTGELPEAFAHPVIRDHLTTCQAKNLIFILVATPVEEVGRDHDFDWAVIEPSSFRSIIQMAGRVRRHRDGEIQEPNIGLLQYNVKGFRGGAERVFNHPGYETDSTTQLATHDLSELVDEKSLLQAVNAIVRIQKRAVLEPRNNLADLEHFATAKTLGTDQIGKPQQANTSRQDRYSRNRRNSAPQSCWHEHLHGHIHGYWWLTALPQYFKRFRKSEPTVQIYLVKKARSIGFCLPDEEMPSIDEVLNIKHLLLPPMQQQKLWLQRDYSELVSLYSASAEQELATSVRYGEISFVYREGNQQYSYNDQLGLVKVK
>NZ_CP046858.1|WP_024374513.1|1275656_1276646_+|type-I-F-CRISPR-associated-endonuclease-Cas1
MDDLSPSDLKVILHSKRANVYYLEYCRVMQKDGRVLYLTEADKENLYFNIPIANTTVLMLGNGTSITQAAMRMLSQAGVLVGFCGGGGTPLHMACEVEWFTPQSEYRPTEYLQGWLSFWFDDEKRLAAAKQFQNARIDYLQRVWRSDRELTLEKFNLQDEVIKQSLDTFHQRTEAASKPADLLLTEAHLTKALYKYAANNTGKQGFTRQHQPDKKCTDKANDFLNHGNYLAYGLAASCLWVLGIPHGFAVMHGKTRRGALVFDVADLIKDAIVLPWAFVCAKENASEQEFRQQILQAFIEHKALDFMFDTVKHVALQGKEEEEREAHQL
>NZ_CP046858.1|WP_158126395.1|1274747_1275542_+|WYL-domain-containing-protein
MLALWQGYIRNKDLIDQFSITRQQAYQDIRAYQKDYPERLKKMASGPYQFSTQYLSEAPKNSLERYLQWLSSGQFYAPQSSINTALGEYCSVPQRYVAPQVIAALTEAIRQQKRVELGYVSLSNPEWEGRIFHPHTFVKTGLRWHVRGYCEKSQDYRDLVLSRCRGDAELLDASEHTKEDDRVWNTQVDLIFAPDPRLNDEQKEVIAHDYQMENGQLRITTRTALVDYLLKEMQVKTHYLEGTPEAQQLILVNPRDVKPWLFER
>NZ_CP046858.1|WP_104408442.1|1274276_1274483_+|AlpA-family-transcriptional-regulator
MRTTDIGERPMRFLKLKEVMEKTALSRSAIYRKMNDGEFPQSVSLGDRAVAWLESEVDEWMSGCVLAR
>NZ_CP046858.1|WP_158126228.1|1273685_1274159_-|DNA-repair-protein-RadC
MEPDMTDYTKEQRYQENQILEHAAEILAHRYVRGDALTNPDATKEYIRCKLGAYEREVFALLLLDNQNRLIEFKELFHGTIDAASVYPREVVKVVLEANAAAVILAHNHPSGDSTPSQADRRITERLKDALTLVDVRVLDHIVVGKDSVSFAERGWL
>NZ_CP046858.1|WP_020328481.1|1273254_1273689_-|DUF2787-domain-containing-protein
MIELHSGDIHLAPSLHAALEKLLRLYSIPDTAERIVLNGRQTAYYSHRQGLHPIEVQFKRESPSKAWQVVCMTSFSYPEESSILVEPELYFHLLNRWCYQPNAGAADLSHPEVLELLMVWMNALARHLSRNVFDELELSVVRQF
>NZ_CP046858.1|WP_158126231.1|1286540_1288073_-|nitric-oxide-reductase-transcriptional-regulator-NorR
MTTLIAQWLHITQDLNSALTRQARFDTLLTTIREVLKCDSSALLLYEDQHFKPLAINGLAKEVLGRRFSINEHPRLEAIARAGDIVRFPSDSNLPDPYDGLIPNHDDKLHIHSCIGLPLLIDDHLIGAITIDAFDPFQFDSLLNHELRFISALAAGGLHTALLLEQLETQTSLPRESYTEKRTLNNDIIGESPEMKSLQQQINAVADTELSVLVMGETGVGKELVANAIHYRSNRANKTLVYLNCAALPESVAESELFGHIKGAFTGAISNRKGKFEQADGGTLFLDEVGELSLELQAKLLRALQYGDIQRVGDDRHIRVNTRIVAATNRILHEEVTAGRFRADLYHRLSVFPIRVPPLREREEDVILLAGFFAEQLRGKLGLNSIRFSSDLIQALKQYSWPGNVRELEHMIKRAGVLSKARTHSSDIELLVSDFDIETSSSSNSVVMNTANISPISESGMGLKEATDRYQKKIIVQTLNHNQGNWAATARQLELDSGNLHRLARRLGIK
>NZ_CP046858.1|WP_020433529.1|1288269_1289760_+|anaerobic-nitric-oxide-reductase-flavorubredoxin
MTIHVKNNIHWVGQRDWEVQDFHGTEYKMTKGTSYNSYLIREEKTVLIDTVDHRFSHQFLQNLEMEIDLKSIDFIVVNHAEEDHSGALSALMEKIPNTPIYCTEAAIDSIVGHHHHPEWNFKTVKTGDSIDIGNGKQLVFVEAPMLHWPDSMMTYLTGDAVLFSNDAFGQHYCDERLFNDEVDQNELMDQCLRYYSNILTPFSSLVTAKIKEVLSFNLPVDMIATSHGIVWRDNPAQIIEQYLEWADNYQEDRITIFYDSMSNNTRMMADAIAQGIHDVDSGVAVKVFNVSKHDKNEILANVFRSKGILVGSSTMNNVMMPKVAGMLEEITGLRFKAKKAAAFGSYGWNGGAVDRIHARLTDAGFETAISLKTKWRPDGKAMRECREHGQAIAKLWANNSLSRSTKVHSTALEPASQAPQVNPRKVEEVQLGVQQEQLHPEGCQCMICTVCNWVYDPSLGEPNQGVEPGTVWSDIPDYFLCPECHLGKDVFVEHKA
>NZ_CP046858.1|WP_044363199.1|1289769_1290918_+|NADH:flavorubredoxin-reductase-NorW
MQTPIVIIGSGFAAYQLVKTVRRVDAHIPIQVFTAEDGTEYNKPDLSHVFSRKQTALDLVVKSGDVFAKEHNIELFANTKVEKVDVDAQQVTANGQVYPYGKLVFATGAKAFVPSMNGDGVRDVLTLNSLQEYQAAETQISRAKRVLIIGGGLIGVEIAMDLATSGKNVTVVEPNTRLLANLIPEFIALPIERQLKQQGVQLALETSVLAVDRSENGSTATLSSGRTVETDIVISAAGLCANTQLAKEAAIRVNKGIVVDSCLQTSIRNVFALGDCAEIQERMMPYLQPIVLSANVLGKQLLGQDAELVLPPMMVKVKTPSYPIQLAGTVNGVENWEVSISAPGIVAKAKDDNGHLVGFVVTSEQVTQAFPLLRELSKSSGR
>NZ_CP046858.1|WP_020328501.1|1290955_1291297_+|DUF1971-domain-containing-protein
MSHLRIPKEWTIQRSTPFFTNDNVPKALLSHHNTAEGVFGQLCVMEGQVTYYGFTDANATEPEVVVVINAGQFATSPPQYWHRIELSDDAQFNINFWSNSNKTNQPMYQSQLK
>NZ_CP046858.1|WP_020328502.1|1291380_1292547_+|methyl-accepting-chemotaxis-protein
MRSLFIRMRFVHWLGVIILVMNALFLTENITSQILQGIVVIFLIIHDIDEKIWGVDSLKNVTMYMKNFERKDLSTPCNVNSQYNSEITNVLNVINTFRRNVKLALEEIQQQAMASDEISTQLKYKSTNISDRILRQDASVSSLNEQLEKLDNTSIALKVKAEETQMQVKSTHAKLEHSVGMMDNLVQGLDQYLESNHQLQKSFNQLSAQTLSIENVVSVIAKLADQTNLLALNAAIEAARAGNQGRGFAVVADEVRRLAQSTQESLHEINSIVSEISTTVKMAGAQMSSQTSTITLLSENTIKSQTEIRIANESIGSVLSFIEHNESEQEVNIHTVSQLVGEANAKVDELKQLSSSNAIDCEALIKQGINLTKVTENVVEKLSMFKTA
>NZ_CP046858.1|WP_158126232.1|1292621_1293692_-|CBS-domain-containing-protein
MSHFDRLLNLSYIAIPVLFTSAIIAVLANYGHTTSATPLLIASIGASVTIIFVIPSSPMGKTWPLIGGHFTAALVGIGLSTAFDNVIVLITLSITSAIIIMIVLKCVHPPGVATALVPVLSNTSQPDLNFLLDPVLLNVLPLALSGITYRRWITMRSSNTTEKSSMNSKSAHEKSSLYFDELHEVLETRNEWLDIDEKTLDEIFKQTHLLALEHKSQKLTCKHVMTENILALTEHDSVYEGLNTLQKNKFSAIPIINSDKEIVGIFSLVDFLLYVEKRKINSFVGLYLLAKKKTSKTIGQYMKRNPISMHEDQHVARLIPYLTSGFHHIPITNDHNQLVGMVTQSDLIEFLYNLKQ
>NZ_CP046858.1|WP_104965422.1|1293980_1294628_+|iron-sulfur-cluster-repair-di-iron-protein
MNVNSITLCDIIKNIPGSIKILKSNNINAYINLRKTLNEILVIDDIAKYSDMIDKLNNLSRDNKELLKFCDIPHQELIKYIIANFHIKHRDQLNQAIELAKRVETAHYDHPQCPIGLSECLEGIANDLCSHMEKEEQILFPMISQGIYPDGPIFVMEQDHDDHIQALSELMTLVNYLEVHEDACQSWIKLYSLLEQFESDILTHIALENNILFKH
>NZ_CP046858.1|WP_044363207.1|1294683_1295364_-|two-component-system-response-regulator-NarL
MIKELTFTNADASTILLIDDHPMLRSGIKQLLNTRKHLTVVAEASNGLQGVEYAIDYEPDLILLDINMPELDGLKTLKLLRDKHITSKIIIFTVSNYDEDVSKAIKLGADGYLLKDMEPEELLASIENACLGKTVISPELTSILVGNLREKKQEKLTNVTIDVLSTREQDILKNIAIGLSNKMIANKLFISESTVKVHVKSILKKLQLRSRVEAAVWVHQEKIRFE
>NZ_CP046858.1|WP_158126233.1|1295365_1297117_-|sensor-histidine-kinase
MNFFNISITKKISFFILMLCSISLSGMFISLITVDNIQGRTHIVNQIGSIRMLIYKSILSTDKSITSKNIIKINTKLNNPNIIKYMIKSGLNDEHGNLLAFFQEKIENQSYESIRSNSDEFVKIIDNLIYNVELNTENNIKSLENIQKVFSIMIIIFGTYAIGNLYSRLFKPWMSILDISRSIKSGDFSKKFSVQRHKDEMNELGDSINLMSESLKETYINLENIVYHKTEDLNRKNRYLDFLYRACKKFNNEQYSCDMLAPLIKELIELTGIHKVTILINDYQESDNTQTFDFGSLSRPEFCKNISCNLCFDKKKVFIENLSEITIKLKDSSHDYGRIVISNNSKSPLNTENEQLIIAFSELLTQSLSVFYKVQQDQQLLILKERNTIARELHDSIAQSLSCLKIKLSILQMDLSHLDEEQISIIGEMREEVNVAYCQLRELLTTFRLKLDGLGFLPALENTVKEYNQKIGTKINLNYEIPANKISAHHSIHLIQIIRELLNNIYKHAHASDVTLDLSMKGNDVSLIILDDGCGFSTSQENSRYGLKIIGDRAQSLSGKWDIISSPGKGTEFYLTFPIYSRV
>NZ_CP046858.1|WP_044363265.1|1297433_1298807_+|NarK-family-nitrate/nitrite-MFS-transporter
MESSGRVSAHSIKQWFPEDRQFWLSQGQYIAKRNLWISIPCLLLSFCVWMIFSAVAVNLPKVGFSFSTEQLFLLTALPSVSGAIGRIPYSFTISIFGGRRWTAFSTLMLVVPMVWLGIAISNPHTSYATFVMIALLCGLGGANFASSMANISFFYPKEMQGSALGLNGGLGNLGVSVMQLVVPIAISVQWFTSQSEGPHLQNAAWIWVPLILLFSLISWFGMNDIENAKASFKEQVKVLKQGHLWLMSLLYLSAFGSFIGFSAGFAMLSQTQFPEVEVLKFAFIGPLIGALMRPVGGAWSDKFGGIKVTFLNFVLMALLTVLIFFTIPSESTSGSFVIFLIIFMGLFACSGIGSGSTFQMIAVLFRRIVTQQARMAGLDEETITRKTGTDTAAALGFISAIGAFGGFFIPQAFGLSLSLTGSASSALILFLFFYVVCSIITWFVYGRNIENGYATKK

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP046858_1	1.25\|1285507\|32\|NZ_CP046858\|PILER-CR,CRISPRCasFinder,CRT	1285507-1285538	32	NZ_CP013487	Vibrio alginolyticus strain ATCC 33787 plasmid pMBL287, complete sequence	79220-79251	0	1.0
NZ_CP046858_1	1.15\|1284907\|32\|NZ_CP046858\|PILER-CR,CRISPRCasFinder,CRT	1284907-1284938	32	MG592513	Vibrio phage 1.142.O._10N.261.49.E11, partial genome	28230-28261	4	0.875
NZ_CP046858_1	1.15\|1284907\|32\|NZ_CP046858\|PILER-CR,CRISPRCasFinder,CRT	1284907-1284938	32	MG592412	Vibrio phage 1.028.O._10N.286.45.B6, partial genome	28230-28261	4	0.875
NZ_CP046858_1	1.15\|1284907\|32\|NZ_CP046858\|PILER-CR,CRISPRCasFinder,CRT	1284907-1284938	32	MG592527	Vibrio phage 1.159.O._10N.261.46.F12, partial genome	28230-28261	4	0.875
NZ_CP046858_1	1.15\|1284907\|32\|NZ_CP046858\|PILER-CR,CRISPRCasFinder,CRT	1284907-1284938	32	MG592588	Vibrio phage 1.217.O._10N.261.45.A1, partial genome	28230-28261	4	0.875
NZ_CP046858_1	1.15\|1284907\|32\|NZ_CP046858\|PILER-CR,CRISPRCasFinder,CRT	1284907-1284938	32	MG592589	Vibrio phage 1.219.O._10N.261.45.E2, partial genome	28230-28261	4	0.875
NZ_CP046858_1	1.15\|1284907\|32\|NZ_CP046858\|PILER-CR,CRISPRCasFinder,CRT	1284907-1284938	32	MG592524	Vibrio phage 1.156.O._10N.261.45.A6, partial genome	28230-28261	4	0.875
NZ_CP046858_1	1.15\|1284907\|32\|NZ_CP046858\|PILER-CR,CRISPRCasFinder,CRT	1284907-1284938	32	MG592669	Vibrio phage 2.159.A._10N.261.46.F12, partial genome	28230-28261	4	0.875
NZ_CP046858_1	1.15\|1284907\|32\|NZ_CP046858\|PILER-CR,CRISPRCasFinder,CRT	1284907-1284938	32	JF974302	Vibrio phage VBpm10, * SEQUENCING IN PROGRESS *, 8 unordered pieces	22612-22643	4	0.875
NZ_CP046858_1	1.15\|1284907\|32\|NZ_CP046858\|PILER-CR,CRISPRCasFinder,CRT	1284907-1284938	32	MG592670	Vibrio phage 2.159.B._10N.261.46.F12, partial genome	28230-28261	4	0.875
NZ_CP046858_1	1.15\|1284907\|32\|NZ_CP046858\|PILER-CR,CRISPRCasFinder,CRT	1284907-1284938	32	HQ316581	Vibrio phage martha 12B12 genomic sequence	4174-4205	4	0.875
NZ_CP046858_1	1.15\|1284907\|32\|NZ_CP046858\|PILER-CR,CRISPRCasFinder,CRT	1284907-1284938	32	MG592507	Vibrio phage 1.136.O._10N.261.45.E11, partial genome	28230-28261	4	0.875
NZ_CP046858_1	1.15\|1284907\|32\|NZ_CP046858\|PILER-CR,CRISPRCasFinder,CRT	1284907-1284938	32	MN693352	Marine virus AFVG_25M558, complete genome	9779-9810	6	0.812
NZ_CP046858_1	1.26\|1285567\|32\|NZ_CP046858\|PILER-CR,CRISPRCasFinder,CRT	1285567-1285598	32	NZ_CP017077	Novosphingobium resinovorum strain SA1 plasmid pSA2, complete sequence	683897-683928	6	0.812
NZ_CP046858_1	1.32\|1285927\|32\|NZ_CP046858\|PILER-CR,CRISPRCasFinder,CRT	1285927-1285958	32	NC_048677	Lactobacillus phage LpeD, complete genome	29804-29835	6	0.812
NZ_CP046858_1	1.1\|1284066\|32\|NZ_CP046858\|PILER-CR,CRISPRCasFinder,CRT	1284066-1284097	32	MN693723	Marine virus AFVG_250M604, complete genome	26236-26267	7	0.781
NZ_CP046858_1	1.8\|1284487\|32\|NZ_CP046858\|PILER-CR,CRISPRCasFinder,CRT	1284487-1284518	32	NC_013085	Synechococcus phage S-RSM4, complete genome	57843-57874	7	0.781
NZ_CP046858_1	1.8\|1284487\|32\|NZ_CP046858\|PILER-CR,CRISPRCasFinder,CRT	1284487-1284518	32	FM207411	Synechococcus phage S-RSM4 complete genome	57843-57874	7	0.781
NZ_CP046858_1	1.9\|1284547\|32\|NZ_CP046858\|PILER-CR,CRISPRCasFinder,CRT	1284547-1284578	32	JF974302	Vibrio phage VBpm10, * SEQUENCING IN PROGRESS *, 8 unordered pieces	23113-23144	7	0.781
NZ_CP046858_1	1.25\|1285507\|32\|NZ_CP046858\|PILER-CR,CRISPRCasFinder,CRT	1285507-1285538	32	MH617459	Microviridae sp. isolate ctcf713, complete genome	2094-2125	7	0.781
NZ_CP046858_1	1.26\|1285567\|32\|NZ_CP046858\|PILER-CR,CRISPRCasFinder,CRT	1285567-1285598	32	NZ_CP015065	Mesorhizobium ciceri biovar biserrulae strain WSM1284 plasmid pMc1284, complete sequence	48017-48048	7	0.781
NZ_CP046858_1	1.26\|1285567\|32\|NZ_CP046858\|PILER-CR,CRISPRCasFinder,CRT	1285567-1285598	32	NC_014918	Mesorhizobium ciceri biovar biserrulae WSM1271 plasmid pMESCI01, complete sequence	380558-380589	7	0.781
NZ_CP046858_1	1.1\|1284066\|32\|NZ_CP046858\|PILER-CR,CRISPRCasFinder,CRT	1284066-1284097	32	MN693220	Marine virus AFVG_25M60, complete genome	8378-8409	8	0.75
NZ_CP046858_1	1.1\|1284066\|32\|NZ_CP046858\|PILER-CR,CRISPRCasFinder,CRT	1284066-1284097	32	NZ_CP015644	Staphylococcus simulans strain MR1 plasmid unnamed2, complete sequence	40403-40434	8	0.75
NZ_CP046858_1	1.1\|1284066\|32\|NZ_CP046858\|PILER-CR,CRISPRCasFinder,CRT	1284066-1284097	32	NZ_CP015644	Staphylococcus simulans strain MR1 plasmid unnamed2, complete sequence	56629-56660	8	0.75
NZ_CP046858_1	1.1\|1284066\|32\|NZ_CP046858\|PILER-CR,CRISPRCasFinder,CRT	1284066-1284097	32	NZ_CP017431	Staphylococcus simulans strain MR4 plasmid unnamed4, complete sequence	127945-127976	8	0.75
NZ_CP046858_1	1.1\|1284066\|32\|NZ_CP046858\|PILER-CR,CRISPRCasFinder,CRT	1284066-1284097	32	NZ_CP017431	Staphylococcus simulans strain MR4 plasmid unnamed4, complete sequence	144175-144206	8	0.75
NZ_CP046858_1	1.1\|1284066\|32\|NZ_CP046858\|PILER-CR,CRISPRCasFinder,CRT	1284066-1284097	32	NZ_CP017429	Staphylococcus simulans strain MR3 plasmid unnamed5, complete sequence	3534-3565	8	0.75
NZ_CP046858_1	1.1\|1284066\|32\|NZ_CP046858\|PILER-CR,CRISPRCasFinder,CRT	1284066-1284097	32	NZ_CP017429	Staphylococcus simulans strain MR3 plasmid unnamed5, complete sequence	19764-19795	8	0.75
NZ_CP046858_1	1.1\|1284066\|32\|NZ_CP046858\|PILER-CR,CRISPRCasFinder,CRT	1284066-1284097	32	NZ_CP016158	Staphylococcus simulans strain MR2 plasmid unnamed1	2681-2712	8	0.75
NZ_CP046858_1	1.1\|1284066\|32\|NZ_CP046858\|PILER-CR,CRISPRCasFinder,CRT	1284066-1284097	32	NZ_CP016158	Staphylococcus simulans strain MR2 plasmid unnamed1	18909-18940	8	0.75
NZ_CP046858_1	1.8\|1284487\|32\|NZ_CP046858\|PILER-CR,CRISPRCasFinder,CRT	1284487-1284518	32	KU686211	Synechococcus phage S-WAM2 isolate 0810PA29, complete genome	128078-128109	8	0.75
NZ_CP046858_1	1.15\|1284907\|32\|NZ_CP046858\|PILER-CR,CRISPRCasFinder,CRT	1284907-1284938	32	KP282674	Acidianus bottle-shaped virus 3 strain ABV3, complete genome	16305-16336	8	0.75
NZ_CP046858_1	1.17\|1285027\|32\|NZ_CP046858\|PILER-CR,CRISPRCasFinder,CRT	1285027-1285058	32	NC_016936	Saprospira grandis str. Lewin plasmid, complete sequence	23954-23985	8	0.75
NZ_CP046858_1	1.19\|1285147\|32\|NZ_CP046858\|PILER-CR,CRISPRCasFinder,CRT	1285147-1285178	32	MN855589	Bacteriophage sp. isolate 133, complete genome	10105-10136	8	0.75
NZ_CP046858_1	1.25\|1285507\|32\|NZ_CP046858\|PILER-CR,CRISPRCasFinder,CRT	1285507-1285538	32	NZ_CP046399	Bacillus sp. A260 plasmid unnamed11, complete sequence	118862-118893	8	0.75
NZ_CP046858_1	1.25\|1285507\|32\|NZ_CP046858\|PILER-CR,CRISPRCasFinder,CRT	1285507-1285538	32	NZ_CP031066	Bacillus sp. SH8-8 plasmid pl193, complete sequence	109066-109097	8	0.75
NZ_CP046858_1	1.25\|1285507\|32\|NZ_CP046858\|PILER-CR,CRISPRCasFinder,CRT	1285507-1285538	32	NC_010180	Bacillus mycoides KBAB4 plasmid pBWB401, complete sequence	58442-58473	8	0.75
NZ_CP046858_1	1.25\|1285507\|32\|NZ_CP046858\|PILER-CR,CRISPRCasFinder,CRT	1285507-1285538	32	NZ_CP031063	Bacillus sp. AR4-2 plasmid pl192, complete sequence	109066-109097	8	0.75
NZ_CP046858_1	1.25\|1285507\|32\|NZ_CP046858\|PILER-CR,CRISPRCasFinder,CRT	1285507-1285538	32	NZ_CP018742	Bacillus cereus strain FORC_047 plasmid pFORC47_2, complete sequence	128973-129004	8	0.75
NZ_CP046858_1	1.29\|1285747\|32\|NZ_CP046858\|PILER-CR,CRISPRCasFinder,CRT	1285747-1285778	32	NZ_CP026117	Lactobacillus curvatus JCM 1096 = DSM 20019 plasmid pLDW-27, complete sequence	7565-7596	8	0.75
NZ_CP046858_1	1.30\|1285807\|32\|NZ_CP046858\|PILER-CR,CRISPRCasFinder,CRT	1285807-1285838	32	NZ_CP026117	Lactobacillus curvatus JCM 1096 = DSM 20019 plasmid pLDW-27, complete sequence	7565-7596	8	0.75
NZ_CP046858_1	1.1\|1284066\|32\|NZ_CP046858\|PILER-CR,CRISPRCasFinder,CRT	1284066-1284097	32	AP014252	Uncultured Mediterranean phage uvMED isolate uvMED-GF-U-MedDCM-OCT-S46-C41, * SEQUENCING IN PROGRESS *	23372-23403	9	0.719
NZ_CP046858_1	1.1\|1284066\|32\|NZ_CP046858\|PILER-CR,CRISPRCasFinder,CRT	1284066-1284097	32	MN693266	Marine virus AFVG_25M408, complete genome	25118-25149	9	0.719
NZ_CP046858_1	1.8\|1284487\|32\|NZ_CP046858\|PILER-CR,CRISPRCasFinder,CRT	1284487-1284518	32	NC_020061	Rhizobium tropici CIAT 899 plasmid pRtrCIAT899b, complete sequence	437501-437532	9	0.719
NZ_CP046858_1	1.9\|1284547\|32\|NZ_CP046858\|PILER-CR,CRISPRCasFinder,CRT	1284547-1284578	32	NC_047758	Pectobacterium phage PPWS1 DNA, complete genome	4771-4802	9	0.719
NZ_CP046858_1	1.9\|1284547\|32\|NZ_CP046858\|PILER-CR,CRISPRCasFinder,CRT	1284547-1284578	32	LC375533	Pectobacterium phage PPWS2 DNA, complete genome	6163-6194	9	0.719
NZ_CP046858_1	1.17\|1285027\|32\|NZ_CP046858\|PILER-CR,CRISPRCasFinder,CRT	1285027-1285058	32	KR093644	Moraxella phage Mcat20, complete genome	23224-23255	9	0.719
NZ_CP046858_1	1.17\|1285027\|32\|NZ_CP046858\|PILER-CR,CRISPRCasFinder,CRT	1285027-1285058	32	KR093637	Moraxella phage Mcat13, complete genome	27231-27262	9	0.719
NZ_CP046858_1	1.28\|1285687\|32\|NZ_CP046858\|PILER-CR,CRISPRCasFinder,CRT	1285687-1285718	32	AP013508	Uncultured Mediterranean phage uvMED DNA, complete genome, group G2, isolate: uvMED-CGR-C15J-MedDCM-OCT-S37-C55	28624-28655	9	0.719
NZ_CP046858_1	1.28\|1285687\|32\|NZ_CP046858\|PILER-CR,CRISPRCasFinder,CRT	1285687-1285718	32	AP013868	Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C15J-MedDCM-OCT-S36-C128, * SEQUENCING IN PROGRESS *	6664-6695	9	0.719
NZ_CP046858_1	1.28\|1285687\|32\|NZ_CP046858\|PILER-CR,CRISPRCasFinder,CRT	1285687-1285718	32	AP013873	Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C15J-MedDCM-OCT-S40-C136, * SEQUENCING IN PROGRESS *	8310-8341	9	0.719
NZ_CP046858_1	1.28\|1285687\|32\|NZ_CP046858\|PILER-CR,CRISPRCasFinder,CRT	1285687-1285718	32	AP013864	Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C15J-MedDCM-OCT-S26-C75, * SEQUENCING IN PROGRESS *	24120-24151	9	0.719
NZ_CP046858_1	1.28\|1285687\|32\|NZ_CP046858\|PILER-CR,CRISPRCasFinder,CRT	1285687-1285718	32	AP013867	Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C15J-MedDCM-OCT-S34-C62, * SEQUENCING IN PROGRESS *	24976-25007	9	0.719
NZ_CP046858_1	1.28\|1285687\|32\|NZ_CP046858\|PILER-CR,CRISPRCasFinder,CRT	1285687-1285718	32	AP013875	Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C15J-MedDCM-OCT-S45-C106, * SEQUENCING IN PROGRESS *	6616-6647	9	0.719
NZ_CP046858_1	1.28\|1285687\|32\|NZ_CP046858\|PILER-CR,CRISPRCasFinder,CRT	1285687-1285718	32	AP013870	Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C15J-MedDCM-OCT-S38-C53, * SEQUENCING IN PROGRESS *	31970-32001	9	0.719
NZ_CP046858_1	1.28\|1285687\|32\|NZ_CP046858\|PILER-CR,CRISPRCasFinder,CRT	1285687-1285718	32	AP013865	Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C15J-MedDCM-OCT-S32-C115, * SEQUENCING IN PROGRESS *	10065-10096	9	0.719
NZ_CP046858_1	1.28\|1285687\|32\|NZ_CP046858\|PILER-CR,CRISPRCasFinder,CRT	1285687-1285718	32	AP013872	Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C15J-MedDCM-OCT-S39-C133, * SEQUENCING IN PROGRESS *	8624-8655	9	0.719
NZ_CP046858_1	1.32\|1285927\|32\|NZ_CP046858\|PILER-CR,CRISPRCasFinder,CRT	1285927-1285958	32	MN586014	Gordonia phage Keelan, complete genome	25701-25732	9	0.719
NZ_CP046858_1	1.1\|1284066\|32\|NZ_CP046858\|PILER-CR,CRISPRCasFinder,CRT	1284066-1284097	32	MN693508	Marine virus AFVG_25M1, complete genome	8161-8192	10	0.688
NZ_CP046858_1	1.1\|1284066\|32\|NZ_CP046858\|PILER-CR,CRISPRCasFinder,CRT	1284066-1284097	32	MH622943	Myoviridae sp. isolate ctbc_4, complete genome	233241-233272	10	0.688
NZ_CP046858_1	1.5\|1284307\|32\|NZ_CP046858\|PILER-CR,CRISPRCasFinder,CRT	1284307-1284338	32	NZ_CP011869	Pseudonocardia sp. HH130629-09 plasmid pLS1-1, complete sequence	14054-14085	10	0.688
NZ_CP046858_1	1.12\|1284727\|32\|NZ_CP046858\|PILER-CR,CRISPRCasFinder,CRT	1284727-1284758	32	NZ_CP051678	Spirosoma sp. CJU-R4 plasmid unnamed1, complete sequence	219451-219482	10	0.688
NZ_CP046858_1	1.22\|1285327\|32\|NZ_CP046858\|PILER-CR,CRISPRCasFinder,CRT	1285327-1285358	32	NZ_CP047174	Rathayibacter sp. VKM Ac-2760 plasmid unnamed1, complete sequence	91882-91913	10	0.688
NZ_CP046858_1	1.31\|1285867\|32\|NZ_CP046858\|PILER-CR,CRISPRCasFinder,CRT	1285867-1285898	32	KX397366	Erwinia phage vB_EamM_ChrisDB, complete genome	95917-95948	10	0.688
NZ_CP046858_1	1.32\|1285927\|32\|NZ_CP046858\|PILER-CR,CRISPRCasFinder,CRT	1285927-1285958	32	NZ_AP022559	Geobacillus subterraneus strain E55-1 plasmid pGspE55-2, complete sequence	31045-31076	10	0.688
NZ_CP046858_1	1.32\|1285927\|32\|NZ_CP046858\|PILER-CR,CRISPRCasFinder,CRT	1285927-1285958	32	MN694598	Marine virus AFVG_250M666, complete genome	29753-29784	10	0.688
NZ_CP046858_1	1.32\|1285927\|32\|NZ_CP046858\|PILER-CR,CRISPRCasFinder,CRT	1285927-1285958	32	MN693877	Marine virus AFVG_250M566, complete genome	7855-7886	10	0.688
NZ_CP046858_1	1.32\|1285927\|32\|NZ_CP046858\|PILER-CR,CRISPRCasFinder,CRT	1285927-1285958	32	MN694162	Marine virus AFVG_250M665, complete genome	8910-8941	10	0.688
NZ_CP046858_1	1.32\|1285927\|32\|NZ_CP046858\|PILER-CR,CRISPRCasFinder,CRT	1285927-1285958	32	MN693718	Marine virus AFVG_250M664, complete genome	8885-8916	10	0.688
NZ_CP046858_1	1.19\|1285147\|32\|NZ_CP046858\|PILER-CR,CRISPRCasFinder,CRT	1285147-1285178	32	NZ_CP032688	Rhizobium sp. CCGE531 plasmid pRCCGE531a, complete sequence	112801-112832	11	0.656
NZ_CP046858_1	1.19\|1285147\|32\|NZ_CP046858\|PILER-CR,CRISPRCasFinder,CRT	1285147-1285178	32	NZ_CP032693	Rhizobium sp. CCGE532 plasmid pRCCGE532a, complete sequence	112800-112831	11	0.656
NZ_CP046858_1	1.33\|1285987\|32\|NZ_CP046858\|PILER-CR,CRISPRCasFinder,CRT	1285987-1286018	32	NZ_AP022593	Mycolicibacterium arabiense strain JCM 18538 plasmid pJCM18538, complete sequence	3648151-3648182	11	0.656

1. spacer 1.25|1285507|32|NZ_CP046858|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013487 (Vibrio alginolyticus strain ATCC 33787 plasmid pMBL287, complete sequence) position: , mismatch: 0, identity: 1.0

ttgatgtgctccacaacatgagatttagttac	CRISPR spacer
ttgatgtgctccacaacatgagatttagttac	Protospacer
********************************

2. spacer 1.15|1284907|32|NZ_CP046858|PILER-CR,CRISPRCasFinder,CRT matches to MG592513 (Vibrio phage 1.142.O._10N.261.49.E11, partial genome) position: , mismatch: 4, identity: 0.875

cgcttcactattatttccccagaaacattaat	CRISPR spacer
tccttcactattatttcccctgaaacattgat	Protospacer
. ****************** ********.**

3. spacer 1.15|1284907|32|NZ_CP046858|PILER-CR,CRISPRCasFinder,CRT matches to MG592412 (Vibrio phage 1.028.O._10N.286.45.B6, partial genome) position: , mismatch: 4, identity: 0.875

cgcttcactattatttccccagaaacattaat	CRISPR spacer
tccttcactattatttcccctgaaacattgat	Protospacer
. ****************** ********.**

4. spacer 1.15|1284907|32|NZ_CP046858|PILER-CR,CRISPRCasFinder,CRT matches to MG592527 (Vibrio phage 1.159.O._10N.261.46.F12, partial genome) position: , mismatch: 4, identity: 0.875

cgcttcactattatttccccagaaacattaat	CRISPR spacer
tccttcactattatttcccctgaaacattgat	Protospacer
. ****************** ********.**

5. spacer 1.15|1284907|32|NZ_CP046858|PILER-CR,CRISPRCasFinder,CRT matches to MG592588 (Vibrio phage 1.217.O._10N.261.45.A1, partial genome) position: , mismatch: 4, identity: 0.875

cgcttcactattatttccccagaaacattaat	CRISPR spacer
tccttcactattatttcccctgaaacattgat	Protospacer
. ****************** ********.**

6. spacer 1.15|1284907|32|NZ_CP046858|PILER-CR,CRISPRCasFinder,CRT matches to MG592589 (Vibrio phage 1.219.O._10N.261.45.E2, partial genome) position: , mismatch: 4, identity: 0.875

cgcttcactattatttccccagaaacattaat	CRISPR spacer
tccttcactattatttcccctgaaacattgat	Protospacer
. ****************** ********.**

7. spacer 1.15|1284907|32|NZ_CP046858|PILER-CR,CRISPRCasFinder,CRT matches to MG592524 (Vibrio phage 1.156.O._10N.261.45.A6, partial genome) position: , mismatch: 4, identity: 0.875

cgcttcactattatttccccagaaacattaat	CRISPR spacer
tccttcactattatttcccctgaaacattgat	Protospacer
. ****************** ********.**

8. spacer 1.15|1284907|32|NZ_CP046858|PILER-CR,CRISPRCasFinder,CRT matches to MG592669 (Vibrio phage 2.159.A._10N.261.46.F12, partial genome) position: , mismatch: 4, identity: 0.875

cgcttcactattatttccccagaaacattaat	CRISPR spacer
tccttcactattatttcccctgaaacattgat	Protospacer
. ****************** ********.**

9. spacer 1.15|1284907|32|NZ_CP046858|PILER-CR,CRISPRCasFinder,CRT matches to JF974302 (Vibrio phage VBpm10, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces) position: , mismatch: 4, identity: 0.875

cgcttcactattatttccccagaaacattaat	CRISPR spacer
tccttcactattatttcccctgaaacattgat	Protospacer
. ****************** ********.**

10. spacer 1.15|1284907|32|NZ_CP046858|PILER-CR,CRISPRCasFinder,CRT matches to MG592670 (Vibrio phage 2.159.B._10N.261.46.F12, partial genome) position: , mismatch: 4, identity: 0.875

cgcttcactattatttccccagaaacattaat	CRISPR spacer
tccttcactattatttcccctgaaacattgat	Protospacer
. ****************** ********.**

11. spacer 1.15|1284907|32|NZ_CP046858|PILER-CR,CRISPRCasFinder,CRT matches to HQ316581 (Vibrio phage martha 12B12 genomic sequence) position: , mismatch: 4, identity: 0.875

cgcttcactattatttccccagaaacattaat	CRISPR spacer
tccttcactattatttcccctgaaacattgat	Protospacer
. ****************** ********.**

12. spacer 1.15|1284907|32|NZ_CP046858|PILER-CR,CRISPRCasFinder,CRT matches to MG592507 (Vibrio phage 1.136.O._10N.261.45.E11, partial genome) position: , mismatch: 4, identity: 0.875

cgcttcactattatttccccagaaacattaat	CRISPR spacer
tccttcactattatttcccctgaaacattgat	Protospacer
. ****************** ********.**

13. spacer 1.15|1284907|32|NZ_CP046858|PILER-CR,CRISPRCasFinder,CRT matches to MN693352 (Marine virus AFVG_25M558, complete genome) position: , mismatch: 6, identity: 0.812

cgctt-cactattatttccccagaaacattaat	CRISPR spacer
-gctcaaactattatttcaacagaaacattaag	Protospacer
 ***.  ***********  ************

14. spacer 1.26|1285567|32|NZ_CP046858|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP017077 (Novosphingobium resinovorum strain SA1 plasmid pSA2, complete sequence) position: , mismatch: 6, identity: 0.812

gtgtagcagaatggctgcacgatcgtcgtcac	CRISPR spacer
gcagcgcagaatggctacacgatcgccgtcac	Protospacer
*..  ***********.********.******

15. spacer 1.32|1285927|32|NZ_CP046858|PILER-CR,CRISPRCasFinder,CRT matches to NC_048677 (Lactobacillus phage LpeD, complete genome) position: , mismatch: 6, identity: 0.812

-gttatcgatgtatgcgttaaatgcggattctt	CRISPR spacer
gactatt-atgtatgcgttaaatacggattcct	Protospacer
 ..***. ***************.*******.*

16. spacer 1.1|1284066|32|NZ_CP046858|PILER-CR,CRISPRCasFinder,CRT matches to MN693723 (Marine virus AFVG_250M604, complete genome) position: , mismatch: 7, identity: 0.781

agtaac--agaagaaccaaaagcagactctttcc	CRISPR spacer
--tcacggagaagaaccaaaaggagaatcttttt	Protospacer
  * **  ************** *** *****..

17. spacer 1.8|1284487|32|NZ_CP046858|PILER-CR,CRISPRCasFinder,CRT matches to NC_013085 (Synechococcus phage S-RSM4, complete genome) position: , mismatch: 7, identity: 0.781

tgttgaatgattttctgatctcaccttgatat	CRISPR spacer
tcttgaatgctttgctgatctcacctttcttg	Protospacer
* ******* *** *************  *

18. spacer 1.8|1284487|32|NZ_CP046858|PILER-CR,CRISPRCasFinder,CRT matches to FM207411 (Synechococcus phage S-RSM4 complete genome) position: , mismatch: 7, identity: 0.781

tgttgaatgattttctgatctcaccttgatat	CRISPR spacer
tcttgaatgctttgctgatctcacctttcttg	Protospacer
* ******* *** *************  *

19. spacer 1.9|1284547|32|NZ_CP046858|PILER-CR,CRISPRCasFinder,CRT matches to JF974302 (Vibrio phage VBpm10, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces) position: , mismatch: 7, identity: 0.781

gctatctaccatcatccaagccaacgcgtttt	CRISPR spacer
gctatcaaccaacatccaagccagtgcatcct	Protospacer
****** **** ***********..**.*..*

20. spacer 1.25|1285507|32|NZ_CP046858|PILER-CR,CRISPRCasFinder,CRT matches to MH617459 (Microviridae sp. isolate ctcf713, complete genome) position: , mismatch: 7, identity: 0.781

ttgatgtgctccacaacatgaga---tttagttac	CRISPR spacer
ttgatctgctccacaatatgagaaccctgagt---	Protospacer
***** **********.******   .* ***

21. spacer 1.26|1285567|32|NZ_CP046858|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP015065 (Mesorhizobium ciceri biovar biserrulae strain WSM1284 plasmid pMc1284, complete sequence) position: , mismatch: 7, identity: 0.781

gtgtagcagaatggctgcacgatcgtcgtcac	CRISPR spacer
ctgaggctgaatggcggcacgatcgtcgcctc	Protospacer
 ** .** ******* ************.* *

22. spacer 1.26|1285567|32|NZ_CP046858|PILER-CR,CRISPRCasFinder,CRT matches to NC_014918 (Mesorhizobium ciceri biovar biserrulae WSM1271 plasmid pMESCI01, complete sequence) position: , mismatch: 7, identity: 0.781

gtgtagcagaatggctgcacgatcgtcgtcac	CRISPR spacer
ctgaggctgaatggcggcacgatcgtcgcctc	Protospacer
 ** .** ******* ************.* *

23. spacer 1.1|1284066|32|NZ_CP046858|PILER-CR,CRISPRCasFinder,CRT matches to MN693220 (Marine virus AFVG_25M60, complete genome) position: , mismatch: 8, identity: 0.75

agtaacagaagaaccaaaagcagactctttcc	CRISPR spacer
agtaaaagaagaaccaaaagaagacgatagta	Protospacer
***** ************** ****  *  .

24. spacer 1.1|1284066|32|NZ_CP046858|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP015644 (Staphylococcus simulans strain MR1 plasmid unnamed2, complete sequence) position: , mismatch: 8, identity: 0.75

agtaacagaagaaccaaaagcagactctttcc	CRISPR spacer
gacaacagaagaacaaaaagcacactcaatca	Protospacer
...*********** ******* ****  **

25. spacer 1.1|1284066|32|NZ_CP046858|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP015644 (Staphylococcus simulans strain MR1 plasmid unnamed2, complete sequence) position: , mismatch: 8, identity: 0.75

agtaacagaagaaccaaaagcagactctttcc	CRISPR spacer
gacaacagaagaacaaaaagcacactcaatca	Protospacer
...*********** ******* ****  **

26. spacer 1.1|1284066|32|NZ_CP046858|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP017431 (Staphylococcus simulans strain MR4 plasmid unnamed4, complete sequence) position: , mismatch: 8, identity: 0.75

agtaacagaagaaccaaaagcagactctttcc	CRISPR spacer
gacaacagaagaacaaaaagcacactcaatca	Protospacer
...*********** ******* ****  **

27. spacer 1.1|1284066|32|NZ_CP046858|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP017431 (Staphylococcus simulans strain MR4 plasmid unnamed4, complete sequence) position: , mismatch: 8, identity: 0.75

agtaacagaagaaccaaaagcagactctttcc	CRISPR spacer
gacaacagaagaacaaaaagcacactcaatca	Protospacer
...*********** ******* ****  **

28. spacer 1.1|1284066|32|NZ_CP046858|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP017429 (Staphylococcus simulans strain MR3 plasmid unnamed5, complete sequence) position: , mismatch: 8, identity: 0.75

agtaacagaagaaccaaaagcagactctttcc	CRISPR spacer
gacaacagaagaacaaaaagcacactcaatca	Protospacer
...*********** ******* ****  **

29. spacer 1.1|1284066|32|NZ_CP046858|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP017429 (Staphylococcus simulans strain MR3 plasmid unnamed5, complete sequence) position: , mismatch: 8, identity: 0.75

agtaacagaagaaccaaaagcagactctttcc	CRISPR spacer
gacaacagaagaacaaaaagcacactcaatca	Protospacer
...*********** ******* ****  **

30. spacer 1.1|1284066|32|NZ_CP046858|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP016158 (Staphylococcus simulans strain MR2 plasmid unnamed1) position: , mismatch: 8, identity: 0.75

agtaacagaagaaccaaaagcagactctttcc	CRISPR spacer
gacaacagaagaacaaaaagcacactcaatca	Protospacer
...*********** ******* ****  **

31. spacer 1.1|1284066|32|NZ_CP046858|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP016158 (Staphylococcus simulans strain MR2 plasmid unnamed1) position: , mismatch: 8, identity: 0.75

agtaacagaagaaccaaaagcagactctttcc	CRISPR spacer
gacaacagaagaacaaaaagcacactcaatca	Protospacer
...*********** ******* ****  **

32. spacer 1.8|1284487|32|NZ_CP046858|PILER-CR,CRISPRCasFinder,CRT matches to KU686211 (Synechococcus phage S-WAM2 isolate 0810PA29, complete genome) position: , mismatch: 8, identity: 0.75

tgttgaatgattttctgatctcaccttgatat	CRISPR spacer
tcttgaatgctttgctgatctcacccttcttg	Protospacer
* ******* *** ***********.*  *

33. spacer 1.15|1284907|32|NZ_CP046858|PILER-CR,CRISPRCasFinder,CRT matches to KP282674 (Acidianus bottle-shaped virus 3 strain ABV3, complete genome) position: , mismatch: 8, identity: 0.75

cgcttcactattatttccccagaaacattaat	CRISPR spacer
tacttcactagtatttccacagaaataattac	Protospacer
..******** ******* ******.* * *.

34. spacer 1.17|1285027|32|NZ_CP046858|PILER-CR,CRISPRCasFinder,CRT matches to NC_016936 (Saprospira grandis str. Lewin plasmid, complete sequence) position: , mismatch: 8, identity: 0.75

attcatggatgatgagcagtacatcactggca	CRISPR spacer
aaaaatctttgatgagcagtacatcaatgaca	Protospacer
*   **   ***************** **.**

35. spacer 1.19|1285147|32|NZ_CP046858|PILER-CR,CRISPRCasFinder,CRT matches to MN855589 (Bacteriophage sp. isolate 133, complete genome) position: , mismatch: 8, identity: 0.75

gtcatggtgtagacgagttcgttgttacttac	CRISPR spacer
actatgttgtagacgagtttgttgttgttttc	Protospacer
...*** ************.******..** *

36. spacer 1.25|1285507|32|NZ_CP046858|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP046399 (Bacillus sp. A260 plasmid unnamed11, complete sequence) position: , mismatch: 8, identity: 0.75

ttgatgtgctccacaacatgagatttagttac	CRISPR spacer
aagactttctccacaacctgagattaagttat	Protospacer
  **. * ********* ******* *****.

37. spacer 1.25|1285507|32|NZ_CP046858|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP031066 (Bacillus sp. SH8-8 plasmid pl193, complete sequence) position: , mismatch: 8, identity: 0.75

ttgatgtgctccacaacatgagatttagttac	CRISPR spacer
aagactttctccacaacctgagattaagttat	Protospacer
  **. * ********* ******* *****.

38. spacer 1.25|1285507|32|NZ_CP046858|PILER-CR,CRISPRCasFinder,CRT matches to NC_010180 (Bacillus mycoides KBAB4 plasmid pBWB401, complete sequence) position: , mismatch: 8, identity: 0.75

ttgatgtgctccacaacatgagatttagttac	CRISPR spacer
aagactttctccacaacctgagattaagttat	Protospacer
  **. * ********* ******* *****.

39. spacer 1.25|1285507|32|NZ_CP046858|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP031063 (Bacillus sp. AR4-2 plasmid pl192, complete sequence) position: , mismatch: 8, identity: 0.75

ttgatgtgctccacaacatgagatttagttac	CRISPR spacer
aagactttctccacaacctgagattaagttat	Protospacer
  **. * ********* ******* *****.

40. spacer 1.25|1285507|32|NZ_CP046858|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP018742 (Bacillus cereus strain FORC_047 plasmid pFORC47_2, complete sequence) position: , mismatch: 8, identity: 0.75

ttgatgtgctccacaacatgagatttagttac	CRISPR spacer
aagactttctccacaacctgagattaagttat	Protospacer
  **. * ********* ******* *****.

41. spacer 1.29|1285747|32|NZ_CP046858|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP026117 (Lactobacillus curvatus JCM 1096 = DSM 20019 plasmid pLDW-27, complete sequence) position: , mismatch: 8, identity: 0.75

aatagaccactctttagaaaacgcattatcta	CRISPR spacer
tacaatctactatttagaaagcgcattatctc	Protospacer
 *.*. *.*** ********.**********

42. spacer 1.30|1285807|32|NZ_CP046858|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP026117 (Lactobacillus curvatus JCM 1096 = DSM 20019 plasmid pLDW-27, complete sequence) position: , mismatch: 8, identity: 0.75

aatagaccactctttagaaaacgcattatcta	CRISPR spacer
tacaatctactatttagaaagcgcattatctc	Protospacer
 *.*. *.*** ********.**********

43. spacer 1.1|1284066|32|NZ_CP046858|PILER-CR,CRISPRCasFinder,CRT matches to AP014252 (Uncultured Mediterranean phage uvMED isolate uvMED-GF-U-MedDCM-OCT-S46-C41, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 9, identity: 0.719

agtaacagaagaaccaaaagcagactctttcc	CRISPR spacer
agtaacagaagaaccaccagcagagaatgcaa	Protospacer
****************  ******   * .

44. spacer 1.1|1284066|32|NZ_CP046858|PILER-CR,CRISPRCasFinder,CRT matches to MN693266 (Marine virus AFVG_25M408, complete genome) position: , mismatch: 9, identity: 0.719

agtaacagaagaaccaaaagcagactctttcc	CRISPR spacer
agtaactgaagaacaaaaagcagcatttacaa	Protospacer
****** ******* ********  *.* .

45. spacer 1.8|1284487|32|NZ_CP046858|PILER-CR,CRISPRCasFinder,CRT matches to NC_020061 (Rhizobium tropici CIAT 899 plasmid pRtrCIAT899b, complete sequence) position: , mismatch: 9, identity: 0.719

tgttgaatgattttctgatctcaccttgatat	CRISPR spacer
aatggaatgcttttctgatcgcacctttggac	Protospacer
 .* ***** ********** ****** . *.

46. spacer 1.9|1284547|32|NZ_CP046858|PILER-CR,CRISPRCasFinder,CRT matches to NC_047758 (Pectobacterium phage PPWS1 DNA, complete genome) position: , mismatch: 9, identity: 0.719

gctatctaccatcatccaagccaacgcgtttt	CRISPR spacer
tcagtacaccatcatccaactcaacgcgttgg	Protospacer
 * .* .************ .*********

47. spacer 1.9|1284547|32|NZ_CP046858|PILER-CR,CRISPRCasFinder,CRT matches to LC375533 (Pectobacterium phage PPWS2 DNA, complete genome) position: , mismatch: 9, identity: 0.719

gctatctaccatcatccaagccaacgcgtttt	CRISPR spacer
tcagtacaccatcatccaactcaacgcgttgg	Protospacer
 * .* .************ .*********

48. spacer 1.17|1285027|32|NZ_CP046858|PILER-CR,CRISPRCasFinder,CRT matches to KR093644 (Moraxella phage Mcat20, complete genome) position: , mismatch: 9, identity: 0.719

attcatggatgatgagcagtacatcactggca	CRISPR spacer
cgacccagctgatgagcggtacatcattggca	Protospacer
   * ..* ********.********.*****

49. spacer 1.17|1285027|32|NZ_CP046858|PILER-CR,CRISPRCasFinder,CRT matches to KR093637 (Moraxella phage Mcat13, complete genome) position: , mismatch: 9, identity: 0.719

attcatggatgatgagcagtacatcactggca	CRISPR spacer
cgacccagctgatgagcggtacatcattggca	Protospacer
   * ..* ********.********.*****

50. spacer 1.28|1285687|32|NZ_CP046858|PILER-CR,CRISPRCasFinder,CRT matches to AP013508 (Uncultured Mediterranean phage uvMED DNA, complete genome, group G2, isolate: uvMED-CGR-C15J-MedDCM-OCT-S37-C55) position: , mismatch: 9, identity: 0.719

agttctggcattgactccataaactgatcgta	CRISPR spacer
agttctggtaatgactccataaaaaaggtgtc	Protospacer
********.* ************  .. .**

51. spacer 1.28|1285687|32|NZ_CP046858|PILER-CR,CRISPRCasFinder,CRT matches to AP013868 (Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C15J-MedDCM-OCT-S36-C128, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 9, identity: 0.719

agttctggcattgactccataaactgatcgta	CRISPR spacer
agttctggtaatgactccataaaaaaggtgtc	Protospacer
********.* ************  .. .**

52. spacer 1.28|1285687|32|NZ_CP046858|PILER-CR,CRISPRCasFinder,CRT matches to AP013873 (Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C15J-MedDCM-OCT-S40-C136, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 9, identity: 0.719

agttctggcattgactccataaactgatcgta	CRISPR spacer
agttctggtaatgactccataaaaaaggtgtc	Protospacer
********.* ************  .. .**

53. spacer 1.28|1285687|32|NZ_CP046858|PILER-CR,CRISPRCasFinder,CRT matches to AP013864 (Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C15J-MedDCM-OCT-S26-C75, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 9, identity: 0.719

agttctggcattgactccataaactgatcgta	CRISPR spacer
agttctggtaatgactccataaaaaaggtgtc	Protospacer
********.* ************  .. .**

54. spacer 1.28|1285687|32|NZ_CP046858|PILER-CR,CRISPRCasFinder,CRT matches to AP013867 (Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C15J-MedDCM-OCT-S34-C62, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 9, identity: 0.719

agttctggcattgactccataaactgatcgta	CRISPR spacer
agttctggtaatgactccataaaaaaggtgtc	Protospacer
********.* ************  .. .**

55. spacer 1.28|1285687|32|NZ_CP046858|PILER-CR,CRISPRCasFinder,CRT matches to AP013875 (Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C15J-MedDCM-OCT-S45-C106, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 9, identity: 0.719

agttctggcattgactccataaactgatcgta	CRISPR spacer
agttctggtaatgactccataaaaaaggtgtc	Protospacer
********.* ************  .. .**

56. spacer 1.28|1285687|32|NZ_CP046858|PILER-CR,CRISPRCasFinder,CRT matches to AP013870 (Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C15J-MedDCM-OCT-S38-C53, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 9, identity: 0.719

agttctggcattgactccataaactgatcgta	CRISPR spacer
agttctggtaatgactccataaaaaaggtgtc	Protospacer
********.* ************  .. .**

57. spacer 1.28|1285687|32|NZ_CP046858|PILER-CR,CRISPRCasFinder,CRT matches to AP013865 (Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C15J-MedDCM-OCT-S32-C115, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 9, identity: 0.719

agttctggcattgactccataaactgatcgta	CRISPR spacer
agttctggtaatgactccataaaaaaggtgtc	Protospacer
********.* ************  .. .**

58. spacer 1.28|1285687|32|NZ_CP046858|PILER-CR,CRISPRCasFinder,CRT matches to AP013872 (Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C15J-MedDCM-OCT-S39-C133, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 9, identity: 0.719

agttctggcattgactccataaactgatcgta	CRISPR spacer
agttctggtaatgactccataaaaaaggtgtc	Protospacer
********.* ************  .. .**

59. spacer 1.32|1285927|32|NZ_CP046858|PILER-CR,CRISPRCasFinder,CRT matches to MN586014 (Gordonia phage Keelan, complete genome) position: , mismatch: 9, identity: 0.719

gttatcgatgtatgcgttaaatgcggattctt	CRISPR spacer
ggcatcgatgtattcgttatatgcggcaagct	Protospacer
* .********** ***** ******    .*

60. spacer 1.1|1284066|32|NZ_CP046858|PILER-CR,CRISPRCasFinder,CRT matches to MN693508 (Marine virus AFVG_25M1, complete genome) position: , mismatch: 10, identity: 0.688

agtaacagaagaaccaaaagcagactctttcc	CRISPR spacer
agtaaaagaagaaccaaaagtagaagagccaa	Protospacer
***** **************.***    ..

61. spacer 1.1|1284066|32|NZ_CP046858|PILER-CR,CRISPRCasFinder,CRT matches to MH622943 (Myoviridae sp. isolate ctbc_4, complete genome) position: , mismatch: 10, identity: 0.688

agtaacagaagaaccaaaagcagactctttcc	CRISPR spacer
attaacagaagaacaaaaagccgacaaagagt	Protospacer
* ************ ****** ***      .

62. spacer 1.5|1284307|32|NZ_CP046858|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP011869 (Pseudonocardia sp. HH130629-09 plasmid pLS1-1, complete sequence) position: , mismatch: 10, identity: 0.688

aaacgctcggcgggtacgctttccccggcctc	CRISPR spacer
ccgagctcggcggtcacgctttccccgagggc	Protospacer
  . ********* .************.   *

63. spacer 1.12|1284727|32|NZ_CP046858|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP051678 (Spirosoma sp. CJU-R4 plasmid unnamed1, complete sequence) position: , mismatch: 10, identity: 0.688

ccgcaccttttacaatgccgttgactcggtag	CRISPR spacer
agataccttttacaatgccgcttactccggcc	Protospacer
  ..****************.* **** *

64. spacer 1.22|1285327|32|NZ_CP046858|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP047174 (Rathayibacter sp. VKM Ac-2760 plasmid unnamed1, complete sequence) position: , mismatch: 10, identity: 0.688

gctttaaagaaaccggccacggcgcgatccac	CRISPR spacer
acgccgccgacaccggccagggcgcgatccag	Protospacer
.* ...  ** ******** ***********

65. spacer 1.31|1285867|32|NZ_CP046858|PILER-CR,CRISPRCasFinder,CRT matches to KX397366 (Erwinia phage vB_EamM_ChrisDB, complete genome) position: , mismatch: 10, identity: 0.688

aatagctatggccagaacccagcagactaccg	CRISPR spacer
tcatgctacggccataacccagcagacccaca	Protospacer
    ****.***** ************.  *.

66. spacer 1.32|1285927|32|NZ_CP046858|PILER-CR,CRISPRCasFinder,CRT matches to NZ_AP022559 (Geobacillus subterraneus strain E55-1 plasmid pGspE55-2, complete sequence) position: , mismatch: 10, identity: 0.688

gttatcgatgtatgcgttaaatgcggattctt	CRISPR spacer
cgaattgatgtatgcgtcaaatgcggccatct	Protospacer
   **.***********.******** . ..*

67. spacer 1.32|1285927|32|NZ_CP046858|PILER-CR,CRISPRCasFinder,CRT matches to MN694598 (Marine virus AFVG_250M666, complete genome) position: , mismatch: 10, identity: 0.688

gttatcgatgtatgcgttaaatgcggattctt	CRISPR spacer
atgtcgaatgtaggcgttaattgcggattccc	Protospacer
.*  . .***** ******* *********..

68. spacer 1.32|1285927|32|NZ_CP046858|PILER-CR,CRISPRCasFinder,CRT matches to MN693877 (Marine virus AFVG_250M566, complete genome) position: , mismatch: 10, identity: 0.688

gttatcgatgtatgcgttaaatgcggattctt	CRISPR spacer
atgtcgaatgtaggcgttaattgcggattccc	Protospacer
.*  . .***** ******* *********..

69. spacer 1.32|1285927|32|NZ_CP046858|PILER-CR,CRISPRCasFinder,CRT matches to MN694162 (Marine virus AFVG_250M665, complete genome) position: , mismatch: 10, identity: 0.688

gttatcgatgtatgcgttaaatgcggattctt	CRISPR spacer
atgtcgaatgtaggcgttaattgcggattccc	Protospacer
.*  . .***** ******* *********..

70. spacer 1.32|1285927|32|NZ_CP046858|PILER-CR,CRISPRCasFinder,CRT matches to MN693718 (Marine virus AFVG_250M664, complete genome) position: , mismatch: 10, identity: 0.688

gttatcgatgtatgcgttaaatgcggattctt	CRISPR spacer
atgtcgaatgtaggcgttaattgcggattccc	Protospacer
.*  . .***** ******* *********..

71. spacer 1.19|1285147|32|NZ_CP046858|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP032688 (Rhizobium sp. CCGE531 plasmid pRCCGE531a, complete sequence) position: , mismatch: 11, identity: 0.656

gtcatggtgtagacgagttcgttgttacttac	CRISPR spacer
atcatgttgtagtcgagttcgttggagagaga	Protospacer
.***** ***** ***********  .   .

72. spacer 1.19|1285147|32|NZ_CP046858|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP032693 (Rhizobium sp. CCGE532 plasmid pRCCGE532a, complete sequence) position: , mismatch: 11, identity: 0.656

gtcatggtgtagacgagttcgttgttacttac	CRISPR spacer
atcatgttgtagtcgagttcgttggagagaga	Protospacer
.***** ***** ***********  .   .

73. spacer 1.33|1285987|32|NZ_CP046858|PILER-CR,CRISPRCasFinder,CRT matches to NZ_AP022593 (Mycolicibacterium arabiense strain JCM 18538 plasmid pJCM18538, complete sequence) position: , mismatch: 11, identity: 0.656

ttgttcgagggcttgcagaatatcctgagttc	CRISPR spacer
accgtcgagggcctgcagaacatcctggccgg	Protospacer
 .  ********.*******.******. .

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1273685 : 1283233

Vibrio_phage(83.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_158126228.1\|1273685_1274159_-	DNA repair protein RadC	E9P5Z9	Wolbachia_endosymbiont_wVitA_of_Nasonia_vitripennis_phage	6.1e-14	31.9
WP_104408442.1\|1274276_1274483_+	AlpA family transcriptional regulator	A0A1V0E8E5	Vibrio_phage	2.5e-09	54.9
WP_158126395.1\|1274747_1275542_+	WYL domain-containing protein	NA	NA	NA	NA
WP_024374513.1\|1275656_1276646_+	type I-F CRISPR-associated endonuclease Cas1	A0A2D0YFC9	Vibrio_phage	1.4e-49	36.7
WP_158126396.1\|1276642_1280011_+	type I-F CRISPR-associated helicase Cas3	A0A2I7RCU8	Vibrio_phage	1.7e-105	30.2
WP_061055676.1\|1280010_1281306_+	type I-F CRISPR-associated protein Csy1	NA	NA	NA	NA
WP_158126229.1\|1281302_1282190_+	type I-F CRISPR-associated protein Csy2	A0A2I7RCX5	Vibrio_phage	7.6e-10	21.5
WP_158126230.1\|1282201_1283233_+	type I-F CRISPR-associated protein Csy3	A0A2D0YRR8	Vibrio_phage	1.1e-41	34.4

DBSCAN-SWA_2

1304531 : 1371472

Vibrio_phage(60.0%)

integrase,transposase,protease

attL 1311481:1311495|attR 1365468:1365482

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_158124304.1\|1304531_1305709_-\|transposase	IS3 family transposase	Q716C2	Shigella_phage	1.2e-122	69.2
WP_104965419.1\|1306191_1306869_+	respiratory nitrate reductase subunit gamma	NA	NA	NA	NA
WP_038127441.1\|1306975_1307422_+	hypothetical protein	NA	NA	NA	NA
WP_104965681.1\|1307638_1307914_-	hypothetical protein	NA	NA	NA	NA
WP_055466417.1\|1308121_1308742_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_158126235.1\|1309402_1309984_+	DUF2913 family protein	NA	NA	NA	NA
WP_044363220.1\|1310011_1310275_-	hypothetical protein	NA	NA	NA	NA
WP_075990185.1\|1311042_1311252_+	hypothetical protein	NA	NA	NA	NA
WP_158126236.1\|1311274_1313020_+	EAL domain-containing protein	NA	NA	NA	NA
1311481:1311495	attL	NA	NA	NA	NA
WP_158126237.1\|1313411_1314332_+\|transposase	IS5 family transposase	A0A1V0E8E1	Vibrio_phage	3.9e-174	98.4
WP_158126238.1\|1315081_1316743_+	HAMP domain-containing protein	A0A2H4J162	uncultured_Caudovirales_phage	2.4e-25	38.0
WP_158126239.1\|1316896_1318528_+	EAL domain-containing protein	NA	NA	NA	NA
WP_158126240.1\|1318665_1319070_+	H-NS histone family protein	NA	NA	NA	NA
WP_075989484.1\|1319412_1319622_+	EAL domain-containing protein	NA	NA	NA	NA
WP_075989483.1\|1319752_1320130_+	CBS domain-containing protein	NA	NA	NA	NA
WP_158124304.1\|1321192_1322369_+\|transposase	IS3 family transposase	Q716C2	Shigella_phage	1.2e-122	69.2
WP_158126241.1\|1322362_1323520_-\|integrase	tyrosine-type recombinase/integrase	A0A1V0E8G8	Vibrio_phage	1.1e-69	38.9
WP_158126242.1\|1323938_1324742_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_158126243.1\|1324834_1326232_+	SLC13 family permease	NA	NA	NA	NA
WP_024375107.1\|1326512_1327625_+	response regulator	W8CYM9	Bacillus_phage	3.2e-13	37.1
WP_158126397.1\|1330178_1330493_+	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA
WP_158126244.1\|1330809_1331700_+	formate dehydrogenase	NA	NA	NA	NA
WP_158126245.1\|1331710_1334020_+	FdhF/YdeP family oxidoreductase	NA	NA	NA	NA
WP_158126246.1\|1334110_1334425_+	cupin domain-containing protein	NA	NA	NA	NA
WP_158126398.1\|1334789_1336610_+	diguanylate cyclase	G3MA91	Bacillus_virus	2.9e-11	32.5
WP_020328531.1\|1336649_1337459_-	EAL domain-containing protein	NA	NA	NA	NA
WP_158126247.1\|1337814_1338603_-	DUF2974 domain-containing protein	Q6XLV5	Feldmannia_irregularis_virus	4.1e-07	29.6
WP_020328533.1\|1338714_1339365_-	hypothetical protein	NA	NA	NA	NA
WP_020328534.1\|1339514_1339763_+	DUF2164 domain-containing protein	NA	NA	NA	NA
WP_055453407.1\|1339925_1340465_+	cytochrome b	NA	NA	NA	NA
WP_020328536.1\|1340461_1341031_+	YceI family protein	NA	NA	NA	NA
WP_158126248.1\|1341123_1342575_-	formate transporter FocA	NA	NA	NA	NA
WP_020328538.1\|1342791_1343697_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_158126249.1\|1343881_1344376_+	DUF1097 domain-containing protein	NA	NA	NA	NA
WP_020328540.1\|1344541_1346173_-	ATP-dependent endonuclease	NA	NA	NA	NA
WP_158126250.1\|1346440_1348174_+	bifunctional metallophosphatase/5'-nucleotidase	NA	NA	NA	NA
WP_158126251.1\|1348620_1349580_+	TerC/Alx family metal homeostasis membrane protein	A0A291LBC5	Escherichia_phage	1.1e-35	35.0
WP_020328543.1\|1349905_1350097_+	hypothetical protein	NA	NA	NA	NA
WP_100267799.1\|1350191_1350767_-	alkylphosphonate utilization protein	NA	NA	NA	NA
WP_158126252.1\|1350899_1351688_-\|protease	M48 family metalloprotease	NA	NA	NA	NA
WP_020328546.1\|1351859_1352312_+	hotdog fold thioesterase	NA	NA	NA	NA
WP_020328547.1\|1352312_1352546_+	DUF3389 domain-containing protein	NA	NA	NA	NA
WP_158126253.1\|1352626_1354318_+	SgrR family transcriptional regulator	NA	NA	NA	NA
WP_024375092.1\|1354319_1354571_+	hypothetical protein	NA	NA	NA	NA
WP_158126399.1\|1354942_1356955_-	TonB-dependent hemoglobin/transferrin/lactoferrin family receptor	NA	NA	NA	NA
WP_020328550.1\|1357300_1358188_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_158126254.1\|1358240_1360925_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_032081879.1\|1361141_1361726_+	cytochrome c biogenesis protein CcdA	NA	NA	NA	NA
WP_158126255.1\|1361886_1362891_+	D-alanine--D-alanine ligase	NA	NA	NA	NA
WP_158126256.1\|1362874_1363843_-\|integrase	tyrosine-type recombinase/integrase	A0A077SLE7	Escherichia_phage	6.8e-12	21.6
WP_024375550.1\|1363944_1364319_+	DUF3319 domain-containing protein	NA	NA	NA	NA
WP_158126257.1\|1364327_1364639_+	stress response translation initiation inhibitor YciH	NA	NA	NA	NA
WP_158126258.1\|1364786_1365155_-	hypothetical protein	A0A1W6UGD7	Vibrio_phage	3.7e-43	72.3
WP_158126259.1\|1365322_1365886_+	3'-5' exonuclease	W6ASW5	Vibrio_phage	4.2e-54	58.4
1365468:1365482	attR	NA	NA	NA	NA
WP_158126260.1\|1365889_1366147_+	hypothetical protein	NA	NA	NA	NA
WP_055453532.1\|1366149_1366350_+	hypothetical protein	C3W4P3	Vibrio_phage	2.1e-24	76.9
WP_158126261.1\|1366339_1367452_+	replication initiation factor family protein	Q64EV8	Vibrio_phage	8.5e-168	77.9
WP_055453530.1\|1367424_1367763_+	DUF1293 domain-containing protein	Q858R2	Vibrio_phage	1.5e-43	74.1
WP_081035198.1\|1367772_1368000_+	hypothetical protein	R9TMT7	Vibrio_phage	3.4e-15	57.3
WP_055453529.1\|1368028_1368244_+	hypothetical protein	R9TRU5	Vibrio_phage	8.8e-13	63.1
WP_158126262.1\|1368606_1369746_+	hypothetical protein	G8IRU9	Vibrio_phage	1.8e-24	45.1
WP_055453527.1\|1369754_1370096_+	DUF2523 domain-containing protein	R9TRT6	Vibrio_phage	1.8e-44	75.2
WP_158126263.1\|1370101_1371472_+	toxin	R9TQ09	Vibrio_phage	6.1e-200	77.9

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP046857

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NZ_CP046858

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection