CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Target MGE spacer number	Prophage number
NZ_CP046856	Vibrio fluvialis strain F8658 chromosome 2, complete sequence	2 crisprs	cas5f,cas7f,cas6f,DEDDh,cas3,cas8f,cas3f,cas1,WYL,csa3	14	0
NZ_CP046855	Vibrio fluvialis strain F8658 chromosome 1, complete sequence	0 crisprs	csa3,DinG,WYL,cas3,DEDDh,RT,csx1	0	5
NZ_CP046854	Vibrio fluvialis strain F8658 plasmid unnamed1, complete sequence	0 crisprs	NA	0	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP046856_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP046856_1

1277337-1277425

TypeI-F

I-F

Consensus_repeat	Method
TTTCTAAGCTGCCTGTACGGCAGTGAAC	CRISPRCasFinder

1 spacers

cas6f,cas7f,cas5f,cas8f,cas3f,cas1,WYL

The CRISPR arrays of NZ_CP046856_1

>merge|NZ_CP046856|1|1277337-1277425|CRISPRCasFinder
ATTCTACCTTGCCTGTGTAGCAGTGAGCTAGCGGGCAGTTGGGGTAAAGTACTTCGTCAATTTCTAACCTGCCTGTACGGCAGTAAACA

>NZ_CP046856|1|1|1277337-1277425|CRISPRCasFinder
ATTCTACCTTGCCTGTGTAGCAGTGAGC	TAGCGGGCAGTTGGGGTAAAGTACTTCGTCAA
TTTCTAACCTGCCTGTACGGCAGTAAACA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP046856.1\|WP_020328498.1\|1275488_1277021_+\|nitric-oxide-reductase-transcriptional-regulator-NorR	unknown	unknown	gnl\|CDD\|235331
NZ_CP046856.1\|WP_020328500.1\|1272642_1273791_-\|NADH:flavorubredoxin-reductase-NorW	unknown	unknown	gnl\|CDD\|179902
NZ_CP046856.1\|WP_020328501.1\|1272263_1272605_-\|DUF1971-domain-containing-protein	unknown	unknown	gnl\|CDD\|226142
NZ_CP046856.1\|WP_158148753.1\|1281937_1283200_-\|type-I-F-CRISPR-associated-protein-Csy1	cas8f	cd09735_cas8f_CAS-I-F	gnl\|CDD\|378220
NZ_CP046856.1\|WP_104408442.1\|1288964_1289171_-\|AlpA-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225848
NZ_CP046856.1\|WP_158148751.1\|1266444_1268196_+\|sensor-histidine-kinase	unknown	unknown	gnl\|CDD\|182581
NZ_CP046856.1\|WP_024374513.1\|1286801_1287791_-\|type-I-F-CRISPR-associated-endonuclease-Cas1	cas1	cd09718_cas1_CAS-I-F	gnl\|CDD\|132676
NZ_CP046856.1\|WP_044363207.1\|1268197_1268878_+\|two-component-system-response-regulator-NarL	unknown	unknown	gnl\|CDD\|182619
NZ_CP046856.1\|WP_020328482.1\|1289300_1289762_+\|DNA-repair-protein-RadC	unknown	unknown	gnl\|CDD\|178801
NZ_CP046856.1\|WP_020328481.1\|1289758_1290193_+\|DUF2787-domain-containing-protein	unknown	unknown	gnl\|CDD\|371323
NZ_CP046856.1\|WP_158148752.1\|1281053_1281941_-\|type-I-F-CRISPR-associated-protein-Csy2	cas5f	pfam09614_cas5f_CAS-I-F	gnl\|CDD\|378221
NZ_CP046856.1\|WP_061056079.1\|1264754_1266128_-\|NarK-family-nitrate/nitrite-MFS-transporter	unknown	unknown	gnl\|CDD\|184994
NZ_CP046856.1\|WP_020328486.1\|1283430_1286805_-\|type-I-F-CRISPR-associated-helicase-Cas3	cas3f	cd09673_cas3f_CAS-I-F	gnl\|CDD\|187804
NZ_CP046856.1\|WP_020328502.1\|1271013_1272180_-\|methyl-accepting-chemotaxis-protein	unknown	unknown	gnl\|CDD\|214599
NZ_CP046856.1\|WP_024374512.1\|1287905_1288700_-\|WYL-domain-containing-protein	WYL	COG2378_WYL_CAS-I:CAS-III	gnl\|CDD\|225253
NZ_CP046856.1\|WP_020328499.1\|1273800_1275291_-\|anaerobic-nitric-oxide-reductase-flavorubredoxin	unknown	unknown	gnl\|CDD\|235475
NZ_CP046856.1\|WP_020328489.1\|1280010_1281042_-\|type-I-F-CRISPR-associated-protein-Csy3	cas7f	cd09677_cas7f_CAS-I-F	gnl\|CDD\|378222
NZ_CP046856.1\|WP_020328490.1\|1279362_1280001_-\|type-I-F-CRISPR-associated-endoribonuclease-Cas6/Csy4	cas6f	pfam09618_cas6f_CAS-I-F	gnl\|CDD\|187870
NZ_CP046856.1\|WP_020328504.1\|1268933_1269581_-\|nitric-oxide-dependent-regulator	unknown	unknown	gnl\|CDD\|225402
NZ_CP046856.1\|WP_020328503.1\|1269869_1270940_+\|CBS-domain-containing-protein	unknown	unknown	gnl\|CDD\|225979

Protein	Function_ID	Function_description	E-value
NZ_CP046856.1\|WP_020328498.1\|1275488_1277021_+\|nitric-oxide-reductase-transcriptional-regulator-NorR	gnl\|CDD\|235331	PRK05022, PRK05022, nitric oxide reductase transcriptional regulator NorR.	0
NZ_CP046856.1\|WP_020328500.1\|1272642_1273791_-\|NADH:flavorubredoxin-reductase-NorW	gnl\|CDD\|179902	PRK04965, PRK04965, NADH:flavorubredoxin reductase NorW.	0
NZ_CP046856.1\|WP_020328501.1\|1272263_1272605_-\|DUF1971-domain-containing-protein	gnl\|CDD\|226142	COG3615, TehB, Uncharacterized protein/domain, possibly involved in tellurite resistance [Inorganic ion transport and metabolism].	2.44859e-38
NZ_CP046856.1\|WP_158148753.1\|1281937_1283200_-\|type-I-F-CRISPR-associated-protein-Csy1	gnl\|CDD\|378220	pfam09611, Cas_Csy1, CRISPR-associated protein (Cas_Csy1). CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) is a widespread family of prokaryotic direct repeats with spacers of unique sequence between consecutive repeats. This entry, typified by YPO2465 of Yersinia pestis, is a CRISPR-associated (Cas) entry strictly associated with the Ypest subtype of CRISPR/Cas locus. It is designated Csy1, for CRISPR/Cas Subtype Ypest protein 1.	2.72317e-122
NZ_CP046856.1\|WP_104408442.1\|1288964_1289171_-\|AlpA-family-transcriptional-regulator	gnl\|CDD\|225848	COG3311, AlpA, Predicted transcriptional regulator [Transcription].	7.39078e-24
NZ_CP046856.1\|WP_158148751.1\|1266444_1268196_+\|sensor-histidine-kinase	gnl\|CDD\|182581	PRK10600, PRK10600, nitrate/nitrite two-component system sensor histidine kinase NarX.	2.03572e-142
NZ_CP046856.1\|WP_024374513.1\|1286801_1287791_-\|type-I-F-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|132676	TIGR03637, cas1_YPEST, CRISPR-associated endonuclease Cas1, subtype I-F/YPEST. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the YPEST subtype of CRISPR/Cas system.	1.5252e-170
NZ_CP046856.1\|WP_044363207.1\|1268197_1268878_+\|two-component-system-response-regulator-NarL	gnl\|CDD\|182619	PRK10651, PRK10651, transcriptional regulator NarL; Provisional.	1.76712e-102
NZ_CP046856.1\|WP_020328482.1\|1289300_1289762_+\|DNA-repair-protein-RadC	gnl\|CDD\|178801	PRK00024, PRK00024, DNA repair protein RadC.	5.38899e-70
NZ_CP046856.1\|WP_020328481.1\|1289758_1290193_+\|DUF2787-domain-containing-protein	gnl\|CDD\|371323	pfam10980, DUF2787, Protein of unknown function (DUF2787). This bacterial family of proteins has no known function.	6.74195e-46
NZ_CP046856.1\|WP_158148752.1\|1281053_1281941_-\|type-I-F-CRISPR-associated-protein-Csy2	gnl\|CDD\|378221	pfam09614, Cas_Csy2, CRISPR-associated protein (Cas_Csy2). CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) is a widespread family of prokaryotic direct repeats with spacers of unique sequence between consecutive repeats. This entry, typified by YPO2464 of Yersinia pestis, is a CRISPR-associated (Cas) entry strictly associated with the Ypest subtype of CRISPR/Cas locus. It is designated Csy2, for CRISPR/Cas Subtype Ypest protein 2.	4.17778e-150
NZ_CP046856.1\|WP_061056079.1\|1264754_1266128_-\|NarK-family-nitrate/nitrite-MFS-transporter	gnl\|CDD\|184994	PRK15034, PRK15034, nitrate/nitrite transport protein NarU; Provisional.	0
NZ_CP046856.1\|WP_020328486.1\|1283430_1286805_-\|type-I-F-CRISPR-associated-helicase-Cas3	gnl\|CDD\|187804	cd09673, Cas3_Cas2_I-F, CRISPR/Cas system-associated protein Cas3/Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas3/Cas2 fusion; This protein includes both DEAH and HD motifs for helicase and N-terminal domain corresponding to Cas2 RNAse; signature gene for Type I and subtype I-F.	0
NZ_CP046856.1\|WP_020328502.1\|1271013_1272180_-\|methyl-accepting-chemotaxis-protein	gnl\|CDD\|214599	smart00283, MA, Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Thought to undergo reversible methylation in response to attractants or repellants during bacterial chemotaxis.	5.57838e-33
NZ_CP046856.1\|WP_024374512.1\|1287905_1288700_-\|WYL-domain-containing-protein	gnl\|CDD\|225253	COG2378, COG2378, Predicted transcriptional regulator [Transcription].	7.01961e-10
NZ_CP046856.1\|WP_020328499.1\|1273800_1275291_-\|anaerobic-nitric-oxide-reductase-flavorubredoxin	gnl\|CDD\|235475	PRK05452, PRK05452, anaerobic nitric oxide reductase flavorubredoxin; Provisional.	0
NZ_CP046856.1\|WP_020328489.1\|1280010_1281042_-\|type-I-F-CRISPR-associated-protein-Csy3	gnl\|CDD\|378222	pfam09615, Cas_Csy3, CRISPR-associated protein (Cas_Csy3). CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) is a widespread family of prokaryotic direct repeats with spacers of unique sequence between consecutive repeats. This entry, typified by YPO2463 of Yersinia pestis, is a CRISPR-associated (Cas) entry strictly associated with the Ypest subtype of CRISPR/Cas locus. It is designated Csy3, for CRISPR/Cas Subtype Ypest protein 3.	0
NZ_CP046856.1\|WP_020328490.1\|1279362_1280001_-\|type-I-F-CRISPR-associated-endoribonuclease-Cas6/Csy4	gnl\|CDD\|187870	cd09739, Cas6_I-F, CRISPR/Cas system-associated RAMP superfamily protein Cas6f. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas6f is an endoribonuclease that generates crRNA; This family is specific for CRISPR/Cas system I-F subtype; Possesses RRM fold; also known as Csy4 family.	9.78006e-59
NZ_CP046856.1\|WP_020328504.1\|1268933_1269581_-\|nitric-oxide-dependent-regulator	gnl\|CDD\|225402	COG2846, COG2846, Regulator of cell morphogenesis and NO signaling [Cell division and chromosome partitioning].	4.76668e-53
NZ_CP046856.1\|WP_020328503.1\|1269869_1270940_+\|CBS-domain-containing-protein	gnl\|CDD\|225979	COG3448, COG3448, CBS-domain-containing membrane protein [Signal transduction mechanisms].	5.1632e-53

>NZ_CP046856.1|WP_020328498.1|1275488_1277021_+|nitric-oxide-reductase-transcriptional-regulator-NorR
MTTLIAQWLHITQDLNSALTRQARFDTLLTTIREVLKCDSSALLLYEDQHFKPLAINGLAKEVLGRRFSINEHPRLEAIARAGDIVRFPSDSNLPDPYDGLIPNHDDKLHIHSCIGLPLLIDDHLIGAITIDAFDPFQFDSLLNHELRFISALAAGGLHTALLLEQLETQTSLPRESYTEKRTLNDDIIGESPEMKSLQQQINAVADTELSVLIMGETGVGKELVANAIHYRSNRANKTLVYLNCAALPESVAESELFGHIKGAFTGAISNRKGKFEQADGGTLFLDEVGELSLELQAKLLRALQYGDIQRVGDDRHIRVNTRIVAATNRILHDEVTAGRFRSDLYHRLSVFPIRVPPLREREEDVILLAGFFAEQLRGKLGLNSIRFSSDLIQALKQYSWPGNVRELEHMIKRAGVLSKARTHSSDIELLVSDFDIETSSSSNSVVMNTTNISPISESGMGLKEATDRYQKKIIVQTLNHNQGNWAATARQLELDSGNLHRLARRLGIK
>NZ_CP046856.1|WP_020328499.1|1273800_1275291_-|anaerobic-nitric-oxide-reductase-flavorubredoxin
MTIHVKNNIHWVGQRDWEVQDFHGTEYKMTKGTSYNSYLIREEKTVLIDTVDHRFSHQFLQNLEMEIDLKSIDFIVVNHAEEDHSGALSALMEKIPNTPIYCTEAAIDSIVGHHHHPEWNFKTVKTGDSIDIGNGKQLVFVEAPMLHWPDSMMTYLTGDAVLFSNDAFGQHYCDERLFNDEVDQNELMDQCLRYYSNILTPFSSLVTAKIKEVLSFNLPVDMIATSHGIVWRDNPAQIIEQYLEWADNYQEDRITIFYDSMSNNTRMMADAIAQGIHDVDSGVAVKVFNVSKHDKNEILANVFRSKGILVGSSTMNNVMMPKVAGMLEEITGLRFKAKKAAAFGSYGWNGGAVDRIHARLTDAGFETAISLKTKWRPDGKAMRECREHGQAIAKLWVNNSLSRSTKVHSTALEPASQAPQVNPRKVEEVQLGVQQEQLHPEGCQCMICTVCNWVYDPSLGEPNQGVEPGTVWSDIPDYFLCPECHLGKDVFVEHKA
>NZ_CP046856.1|WP_020328500.1|1272642_1273791_-|NADH:flavorubredoxin-reductase-NorW
MQTPIVIIGSGFAAYQLVKTVRRVDAHIPIQVFTAEDGTEYNKPDLSHVFSRKQTALDLVVKSGDVFAKEHNIELFANTKVEKVDVDAQQVTANGQVYPYGKLVFATGAKAFVPSMNGDGVRDVLTLNSLQEYQAAETQISRAKRVLIIGGGLIGVEIAMDLATSGKNVTVIEPNTRLLANLIPEFIALPIERQLKQQGVQLALETSVLAVDRSENGSTATLSSGRTVETDIVISAAGLCANTQLAKEAAIRVNKGIVVDSCLQTSIRNVFALGDCAEIQERMMPYLQPIVLSANVLGKQLLGQDAELVLPPMMVKVKTPSYPIQLAGTVNGVENWEVSISAPGIVAKAKDDNGHLVGFVVTSEQVTQAFPLLRELSKSSGR
>NZ_CP046856.1|WP_020328501.1|1272263_1272605_-|DUF1971-domain-containing-protein
MSHLRIPKEWTIQRSTPFFTNDNVPKALLSHHNTAEGVFGQLCVMEGQVTYYGFTDANATEPEVVVVINAGQFATSPPQYWHRIELSDDAQFNINFWSNSNKTNQPMYQSQLK
>NZ_CP046856.1|WP_020328502.1|1271013_1272180_-|methyl-accepting-chemotaxis-protein
MRSLFIRMRFVHWLGVIILVMNALFLTENITSQILQGIVVIFLIIHDIDEKIWGVDSLKNVTMYMKNFERKDLSTPCNVNSQYNSEITNVLNVINTFRRNVKLALEEIQQQAMASDEISTQLKYKSTNISDRILRQDASVSSLNEQLEKLDNTSIALKVKAEETQMQVKSTHAKLEHSVGMMDNLVQGLDQYLESNHQLQKSFNQLSAQTLSIENVVSVIAKLADQTNLLALNAAIEAARAGNQGRGFAVVADEVRRLAQSTQESLHEINSIVSEISTTVKMAGAQMSSQTSTITLLSENTIKSQTEIRIANESIGSVLSFIEHNESEQEVNIHTVSQLVGEANAKVDELKQLSSSNAIDCEALIKQGINLTKVTENVVEKLSMFKTA
>NZ_CP046856.1|WP_020328503.1|1269869_1270940_+|CBS-domain-containing-protein
MSHFDRLLNLSYIAIPVLLTSAIIAVLANYGHTTSATPLLIASIGASVTIIFVIPSSPMGKTWPLIGGHFTAALVGIGLSTAFDNVIVLITLSITSTIIIMIVLKCVHPPGVATALVPVLSNTSQPDLNFLLDPVLLNVLPLALSGITYRRWITMRSSNTTEKSSMNSKSAHEKSSLYFDELHEVLETRNEWLDIDEKTLDEIFKQTHLLALEHKSQKLTCKHVMTENILALTEHDSVYEGLNTLQKNKFSAIPIINSDKEIVGIFSLVDFLLYVEKRKINSFVGLYLLAKKKTSKTIGQYMKRNPISMHEDQHVARLIPYLTSGFHHIPITNDHNQLIGMVTQSDLIEFLYNLKQ
>NZ_CP046856.1|WP_020328504.1|1268933_1269581_-|nitric-oxide-dependent-regulator
MNVNSITLCDIIKNIPGSIKILKSNNINAYINLRKTLNEILVIDDIAKYSDMIDKLNNLSRDNKELLKFCDIPHQELIKYIIANFHIKHRDQLNQAIELAKRVETAHYDHPQCPIGLSECLEGIANDLCSHMEKEEQILFPMISQGIYPDGPIFVMEQDHDDHIQALGELMTLVNYLEVHEDACQSWIKLYSLLEQFESDILTHIALENNILFKH
>NZ_CP046856.1|WP_044363207.1|1268197_1268878_+|two-component-system-response-regulator-NarL
MIKELTFTNADASTILLIDDHPMLRSGIKQLLNTRKHLTVVAEASNGLQGVEYAIDYEPDLILLDINMPELDGLKTLKLLRDKHITSKIIIFTVSNYDEDVSKAIKLGADGYLLKDMEPEELLASIENACLGKTVISPELTSILVGNLREKKQEKLTNVTIDVLSTREQDILKNIAIGLSNKMIANKLFISESTVKVHVKSILKKLQLRSRVEAAVWVHQEKIRFE
>NZ_CP046856.1|WP_158148751.1|1266444_1268196_+|sensor-histidine-kinase
MNFFNISITKKISFFILMLCSISLSGMFISLITVDNIQGRTHIVNQIGSIRMLIYKSILSTDKSITSKNIIKINTKLNNPNIIKYMIKSGLNDEHGNLLAFFQEKIENQSYESIRSNSDEFVKIIDNLIYNVELNTENNIKSLENIQKVFSIMIIIFGIYAIGNLYSRLFKPWISILDISRSIKSGDFSKKFSVQRHKDEMNELGDSINLMSESLKETYINLENIVYHKTEDLNRKNRYLDFLYRACKKFNNEQYSCDMLAPLIKELIELTGIHKVTILINDYQESDNTQTFDFGSLSRPEFCKNISCNLCFDKKKVFIENLSEITIKLKDSSHDYGRIVISNNSKSPLNTENEQLIIAFSELLTQSLSVFYKVQQDQQLLILKERNTIARELHDSIAQSLSCLKIKLSILQMDLSHLDEEQISIIGEMREEVNVAYCQLRELLTTFRLKLDGLGFLPALENTVKEYNQKIGTKINLNYEIPANKISAHHSIHLIQIIRELLNNIYKHAHASDVTLDLSMKGNDVSLIILDDGCGFSTSQENSRYGLKIIGDRAQSLSGKWDIISSPGKGTEFYLTFPIYSRV
>NZ_CP046856.1|WP_061056079.1|1264754_1266128_-|NarK-family-nitrate/nitrite-MFS-transporter
MESSGRVSAHSIKQWFPEDRQFWLSQGQYIAKRNLWISIPCLLLSFCVWMIFSAVAVNLPKVGFSFSTEQLFLLTALPSVSGAIGRIPYSFTISIFGGRRWTAFSTLMLVVPMVWLGIAISNPHTSYSTFVMIALLCGLGGANFASSMANISFFYPKEMQGSALGLNGGLGNLGVSVMQLVVPIAISVQWFTSQSEGPHLQNAAWIWVPLILLFSLISWFGMNDIENAKASFKEQVKVLKQGHLWLMSLLYLSAFGSFIGFSAGFAMLSQTQFPEVEVLKFAFIGPLIGALMRPVGGAWSDKFGGIKVTFLNFVLMALLTVLIFFTIPSESTSGSFVIFLIIFMGLFACSGIGSGSTFQMIAVLFRRIVTQQARMAGLDEETITRKTGTDTAAALGFISAIGAFGGFFIPQAFGLSLSLTGSASSALILFLFFYVVCSIITWFVYGRNIENGYATKK
>NZ_CP046856.1|WP_020328490.1|1279362_1280001_-|type-I-F-CRISPR-associated-endoribonuclease-Cas6/Csy4
MNYYQEITLLPDADIALGFLWQNVFQQVHIALVEHKVASNQSLVAVGFPDYRQAKFPLGAKLRLFAKEQATLEKLAIHRWLTRLEDYVHIKGIKPVPNDVTYVSFVRKQVKSPERIERDMQQKAELWAAKSGKPLVECLADLRQSKPTALCSLPFIYLHSQQTKQRSPEKNSKFPLFIQMQQQSTSQDGGFDCYGLSSKANGQSALATVPHF
>NZ_CP046856.1|WP_020328489.1|1280010_1281042_-|type-I-F-CRISPR-associated-protein-Csy3
MAKNNDTASVLAFEKKLVPSDGYLFGCQWETKAQATPLALQEKSVRGTISNRLKSAVKNDPAKLNAEVEKANLQRVDACALGQDHDTLKLHFTLKVLGGLAQPSACNNALFKQSYSTAVSKYITQYGCFELAKRYATNLANARFLWRNRVGAEEIEVQVKALNKEAEQAWTFNAKQFSTKHFDHNDSQINSLADRIAQALASETDHLMLQIDCYAKVGKAQEVYPSEELVLDKGNSKTKKSKILYAVNEHAAMHSQKIGNALRSIDTWYPDYASEEQSAGAIAIEPYGAVTNLGKAFRTPKDKQDFYTFFDKWARGESLPREEDEHYVMAVLVRGGVFGESDK
>NZ_CP046856.1|WP_158148752.1|1281053_1281941_-|type-I-F-CRISPR-associated-protein-Csy2
MNVLILPHLKIHNANALSSPFTIGFPAMTAWLGFVHALERKLSQAGLSDLMLHSAAVVSHRCDVQTHKGEGDFVHSIIGTGNPLDKDGSRSAFIEEARCHLDVSLVIEWSGNEEQVQQPEFTEQLQAVIATMKVAGGDVFSIGKPSIKSVITEQDTAQVLRQLMPGYVLIERRDLMLEAMKQGADALDALLGYLTVHHHCEQLEDQSVVWHSQRKTSGWIVPIATGFQGISPLGTAKNQRDPSVPHRFAESVVTLGEFVMAHKIKHLDDILWQYNPDLENDLYLCQQVNAINEHQ
>NZ_CP046856.1|WP_158148753.1|1281937_1283200_-|type-I-F-CRISPR-associated-protein-Csy1
MIDPAITAFFAERKEAWLKKNISAAMSDAEVLEKQQECEQNFLLDNWLSDAAKRAGQISVASHPCTFSHPSARKNKNGYVSSIIAKNKPRIDGFLRSGNVSVEQDALGNAAALDVYKFLSLEMSDQRSLLVHIEQESDLARQLLDIPSCEYQALRDGFLKMIDSDQASVSSSKIKQVYFPIADGEYHLLSLLTHSGHLFELRKRLDALRFGDAVKEARECKKTNHFHPAGYQEIFGLTTIGFGGTKPQNISVLNNQNAGKAHLLVSIPPELTPRDIRLPRTDFFKESFTAWQAKEVLEALHRLFQTDYNNVNLRDGRDYRIQQYVDLVIEKMWQVRLFLEAYSGELSSALPLEQKIWLYPEFADLRHQEDEWLDKIIRHIARGLINHYSRSKVITSPITLADQELLAIEKVVASNKENLR
>NZ_CP046856.1|WP_020328486.1|1283430_1286805_-|type-I-F-CRISPR-associated-helicase-Cas3
MMVTFVSQCEKNALKKTRRVLDAFANRIGDNTWQTLITEEGLLTVKKMLCQTASRSTAVSCHWIRSRSRSQFLWVVGNKKKFNAEGYVPVNSTEKDLLNSEFENDWKYLPLIKAITGMAALLHDWGKASLLFQEKLNPEIKNKHKGDPLRHEWISCLLFQQWISNQNHERLDEVWLNSLIDKGIDETCFNTNVLQKEKALAELPTAAALIAWLIVSHHRLPLPKEKDLCDRQREVDSSSLSDLLARITPAWGYENRFDEYNALLPKCFEFPLGLLSNSSIWLAELKRRAKDLLHHLPLLDQAMNDGSWRGILHHARLCLMLGDHYYSSQPNDHQWKASIELYANTDPATKARKQKLDEHLVNVAKVAVNTVKLLPFFETEPLKATELSELVPKANTPKAFRWQDKAVRKINEWREHTEDKSQGYFVVNMASTGCGKTIANAKIMQALSEEGESLRFILALGLRTLTLQTGDEYKERLKLQESDLAVLIGSKAISELHKSGKAVEKDDIEPEQADAGSESLESLQDENDVLDWQGVLPEEELTTVLTKEKDRKLLYAPVLVCTIDHIMAATETKRGGRYILPCLRLMSSDLVIDEIDDFTGDDLIAIGRLVHLAAMLGRKVMISSATIPPDLALGLYNAYRQGWKVFAASRDRVSTVNCVYVDEFSADVQMVGCDDADLAAYEAFQQRFVSKRVDKLKQQVAKRKADIIPCIKQNDQPLEQQYFEIVKQAILAKHQHHNTLEPESQSRVSFGVVRVANIQPCVELTQYLLSCDWPADTEVRCMAYHSQQVLLLRHEQEKHLDEVLKRKEKTGELPEAFAHPVIRDHLTTCQAKNLIFILVATPVEEVGRDHDFDWAVIEPSSFRSIIQMAGRVRRHRDGEIQEPNIGLLQYNVKGFRGGAERVFNHPGYETDSTTQLVTHDLSELVDEKSLLQAVNAIVRIQKRAVLEPRNNLADLEHFATAKTLGNEQIGKPQQVNISRQERYNRNRRSSSPQSCWHEHLHGHIHGYWWLTALPQYFKRFRKSEPTVQIYLVKKARSIEFCLREEQGGLLPIERTLNIEHLPLALEQEQKLWLQRDYSELVSLYSPNAEQEFATSVRYGEISFIYREGNQQYSYNDQLGLVRTG
>NZ_CP046856.1|WP_024374513.1|1286801_1287791_-|type-I-F-CRISPR-associated-endonuclease-Cas1
MDDLSPSDLKVILHSKRANVYYLEYCRVMQKDGRVLYLTEADKENLYFNIPIANTTVLMLGNGTSITQAAMRMLSQAGVLVGFCGGGGTPLHMACEVEWFTPQSEYRPTEYLQGWLSFWFDDEKRLAAAKQFQNARIDYLQRVWRSDRELTLEKFNLQDEVIKQSLDTFHQRTEAASKPADLLLTEAHLTKALYKYAANNTGKQGFTRQHQPDKKCTDKANDFLNHGNYLAYGLAASCLWVLGIPHGFAVMHGKTRRGALVFDVADLIKDAIVLPWAFVCAKENASEQEFRQQILQAFIEHKALDFMFDTVKHVALQGKEEEEREAHQL
>NZ_CP046856.1|WP_024374512.1|1287905_1288700_-|WYL-domain-containing-protein
MLALWQGYIRNKDLVDQFSITRQQAYQDIRAYQKDYPERLKKMASGPYQFSTQYLSEAPKNSLERYLQWLSSGQFYAPQSSINTALGEYCSVPQRYVAPQVIAALTEAIRQQKRVELGYVSLSNPEWEGRIFHPHTFVKTGLRWHVRGYCEKSQDYRDLVLSRCRGDAELLDASEHTKEDDRVWNTQVDLIFAPDPRLNDEQKEVIAHDYQMENGQLRITTRAALVDYLLKEMQVKTHYLEGTPEAQQLILVNPRDVKPWLFER
>NZ_CP046856.1|WP_104408442.1|1288964_1289171_-|AlpA-family-transcriptional-regulator
MRTTDIGERPMRFLKLKEVMEKTALSRSAIYRKMNDGEFPQSVSLGDRAVAWLESEVDEWMSGCVLAR
>NZ_CP046856.1|WP_020328482.1|1289300_1289762_+|DNA-repair-protein-RadC
MTDYTKEQRYQENQILEHAAEILAHRYVRGDALTNPDATKEYIRCKLGAYEREVFALLLLDNQNRLIEFKELFHGTIDAASVYPREVVKVVLEANAAAVILAHNHPSGDSTPSQADRRITERLKDALTLVDVRVLDHIVVGKDSVSFAERGWL
>NZ_CP046856.1|WP_020328481.1|1289758_1290193_+|DUF2787-domain-containing-protein
MIELHSGDIHLAPSLHAALEKLLRLYSIPDTAERIVLNGRQTAYYSHRQGLHPIEVQFKRESPSKAWQVVCMTSFSYPEESSILVEPELYFHLLNRWCYQPNAGAADLSHPEVLELLMVWMNALARHLSRNVFDELELSVVRQF

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Crispr_ID: NZ_CP046856_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP046856_2

1277438-1279207

TypeI-F

I-F

Consensus_repeat	Method
TTTCTAAGCTGCCTGTACGGCAGTGAAC	CRT
TTTCTAAGCTGCCTGTACGGCAGTGAAC	PILER-CR
TTTCTAAGCTGCCTGTACGGCAGTGAAC	CRISPRCasFinder
TTTCTAAGCTGCCTGTACGGCAGTGAAC	PILER-CR

29 spacers

cas6f,cas7f,cas5f,cas8f,cas3f,cas1,WYL

The CRISPR arrays of NZ_CP046856_2

>merge|NZ_CP046856|2|1277438-1279207|CRT,PILER-CR,CRISPRCasFinder,PILER-CR
CAGCTAAGCTGCCTGTACGGCAGTGAACGATTTAAGAACGTTTGTCGTGCGCTTTAGAATTTTCTAAGCTGCCTGTACGGCAGTGAACAGGCACTCATTAACACCAGGTAAACAGGTTTATTTCTAAGCTGCCTCTACGGCAGTGAACCGGAGTCAACCGACCCAACATTACATACTGCATTTCTAAGCTGCCTGTACGGCAGTGAACTTTCAATCACCGTCACCACTTCTTTTGATTGCTTTCTAAGCTGCCTGTACGGCAGTGAACCATTGGGTTTTGATGTAGTCCTGCAGGTATTTTTTCTAAGCTGCCTGTACGGCAGTGAACAGTCCGGTACTCATCTGACCGTTTCCGAGATATTTCTAAGCTGCCTGTACGGCAGTGAACATTTGCAGTGCAGTGCGCAGTGGTACACGGTTTTTCTAAGCTGCCTGTACGGCAGTGAACAAGGAAAAATATCTTTATCTCGAAAATGTGAAATTTCTAAGCTGCCTGTACGGCAGTGAACCATGTCAACGGCTCAGCAATGGTGCTTGTTAACTTTCTAAGCTGCCTGTACGGCAGTGAACTGGGTGTATTCCTGAGTTTTGCGGCCCTGCTCTTTCTAAGCTGCCTGTACGGCAGTGAACGAAACCAAAACAGGCAAGGACCACTTCGGCATTTTCTAAGCTGCCTGTACGGCAGTGAACGAGCAGCAAAGCGGCTTCACGGTCGATGGTGTTTTCTAAGCTGCCTGTACGGCAGTGAACGCTCAGCAGACCAAACCATGTGGGGTTATATCTTTCTAAGCTGCCTGTACGGCAGTGAACTGGCTATCTCAACAACAGTTCCAGATTATGCATTTCTAAGCTGCCTGTACGGCAGTGAACTTTATGTTCAGAATGGTGACACTGTTCCTGTTTTTCTAAGCTGCCTGTACGGCAGTGAACTATTAGTTTCTAACGCAATATCTGAAATGGTTTTTCTAAGCTGCCTGTACGGCAGTGAACCTGATTTTTATCAGGGTAACTTAGCTGCTTTGTTTCTAAGCTGCCTGTACGGCAGTGAACTTTGTTTCGAAATCGAACTCTTCGGGGATTAATTTCTAAGCTGCCTGTACGGCAGTGAACTCTATCATCCAGCTGGTGCCGAATACCATTGATTTCTAAGCTGCCTGTACGGCAGTGAACGCAAAGTCTTCACCGAGTGCATGGCGCAGGTTTTTCTAAGCTGCCTGTACGGCAGTGAACATTCCATCAAACTGCTCAGCGGTTAGCATGCATTTCTAAGCTGCCTGTACGGCAGTGAACATATTGGCCCTTGCTCAAGGCAGATTTACAGATTTCTAAGCTGCCTGTACGGCAGTGAACCTGAAAGCCACCTCAATCCGTGGCCCGCAAGCTTTCTAAGCTGCCTGTACGGCAGTGAACTTTAGTCAGTGTGTCGTTCGCCATCGTGATGCTTTCTAAGCTGCCTGTACGGCAGTGAACGTAAGGGCTGGTATGAGCCGAACTATCCAGACTTTCTAAGCTGCCTGTACGGCAGTGAACGTGGTCGCGCCGATACGCACCTTTTTGGTATATTTCTAAGCTGCCTGTACGGCAGTGAACAATAATCAATCTCTTATAGAGGATCACATCATTTTCTAAGCTGCCTGTACGGCAGTGAACTTCAGCCCCTTCCGATAACCCGTAGTCATCGCTTTCTAAGCTGCCTGTACGGCAGTGAACTGTATGCGTGCGTCCCTATGCGAAATTTTCAATTTCTAAGCTGCCTGTACGGCAGTGAAC

>NZ_CP046856|2|1|1277438-1279207|CRT
CAGCTAAGCTGCCTGTACGGCAGTGAAC	GATTTAAGAACGTTTGTCGTGCGCTTTAGAAT
TTTCTAAGCTGCCTGTACGGCAGTGAAC	AGGCACTCATTAACACCAGGTAAACAGGTTTA
TTTCTAAGCTGCCTCTACGGCAGTGAAC	CGGAGTCAACCGACCCAACATTACATACTGCA
TTTCTAAGCTGCCTGTACGGCAGTGAAC	TTTCAATCACCGTCACCACTTCTTTTGATTGC
TTTCTAAGCTGCCTGTACGGCAGTGAAC	CATTGGGTTTTGATGTAGTCCTGCAGGTATTT
TTTCTAAGCTGCCTGTACGGCAGTGAAC	AGTCCGGTACTCATCTGACCGTTTCCGAGATA
TTTCTAAGCTGCCTGTACGGCAGTGAAC	ATTTGCAGTGCAGTGCGCAGTGGTACACGGTT
TTTCTAAGCTGCCTGTACGGCAGTGAAC	AAGGAAAAATATCTTTATCTCGAAAATGTGAAA
TTTCTAAGCTGCCTGTACGGCAGTGAAC	CATGTCAACGGCTCAGCAATGGTGCTTGTTAAC
TTTCTAAGCTGCCTGTACGGCAGTGAAC	TGGGTGTATTCCTGAGTTTTGCGGCCCTGCTC
TTTCTAAGCTGCCTGTACGGCAGTGAAC	GAAACCAAAACAGGCAAGGACCACTTCGGCAT
TTTCTAAGCTGCCTGTACGGCAGTGAAC	GAGCAGCAAAGCGGCTTCACGGTCGATGGTGT
TTTCTAAGCTGCCTGTACGGCAGTGAAC	GCTCAGCAGACCAAACCATGTGGGGTTATATC
TTTCTAAGCTGCCTGTACGGCAGTGAAC	TGGCTATCTCAACAACAGTTCCAGATTATGCA
TTTCTAAGCTGCCTGTACGGCAGTGAAC	TTTATGTTCAGAATGGTGACACTGTTCCTGTT
TTTCTAAGCTGCCTGTACGGCAGTGAAC	TATTAGTTTCTAACGCAATATCTGAAATGGTT
TTTCTAAGCTGCCTGTACGGCAGTGAAC	CTGATTTTTATCAGGGTAACTTAGCTGCTTTG
TTTCTAAGCTGCCTGTACGGCAGTGAAC	TTTGTTTCGAAATCGAACTCTTCGGGGATTAA
TTTCTAAGCTGCCTGTACGGCAGTGAAC	TCTATCATCCAGCTGGTGCCGAATACCATTGA
TTTCTAAGCTGCCTGTACGGCAGTGAAC	GCAAAGTCTTCACCGAGTGCATGGCGCAGGTT
TTTCTAAGCTGCCTGTACGGCAGTGAAC	ATTCCATCAAACTGCTCAGCGGTTAGCATGCA
TTTCTAAGCTGCCTGTACGGCAGTGAAC	ATATTGGCCCTTGCTCAAGGCAGATTTACAGA
TTTCTAAGCTGCCTGTACGGCAGTGAAC	CTGAAAGCCACCTCAATCCGTGGCCCGCAAGC
TTTCTAAGCTGCCTGTACGGCAGTGAAC	TTTAGTCAGTGTGTCGTTCGCCATCGTGATGC
TTTCTAAGCTGCCTGTACGGCAGTGAAC	GTAAGGGCTGGTATGAGCCGAACTATCCAGAC
TTTCTAAGCTGCCTGTACGGCAGTGAAC	GTGGTCGCGCCGATACGCACCTTTTTGGTATA
TTTCTAAGCTGCCTGTACGGCAGTGAAC	AATAATCAATCTCTTATAGAGGATCACATCAT
TTTCTAAGCTGCCTGTACGGCAGTGAAC	TTCAGCCCCTTCCGATAACCCGTAGTCATCGC
TTTCTAAGCTGCCTGTACGGCAGTGAAC	TGTATGCGTGCGTCCCTATGCGAAATTTTCAA
TTTCTAAGCTGCCTGTACGGCAGTGAAC

>NZ_CP046856|2|1|1277498-1279207|PILER-CR
TTTCTAAGCTGCCTGTACGGCAGTGAAC	AGGCACTCATTAACACCAGGTAAACAGGTTTA
TTTCTAAGCTGCCTCTACGGCAGTGAAC	CGGAGTCAACCGACCCAACATTACATACTGCA
TTTCTAAGCTGCCTGTACGGCAGTGAAC	TTTCAATCACCGTCACCACTTCTTTTGATTGC
TTTCTAAGCTGCCTGTACGGCAGTGAAC	CATTGGGTTTTGATGTAGTCCTGCAGGTATTT
TTTCTAAGCTGCCTGTACGGCAGTGAAC	AGTCCGGTACTCATCTGACCGTTTCCGAGATA
TTTCTAAGCTGCCTGTACGGCAGTGAAC	ATTTGCAGTGCAGTGCGCAGTGGTACACGGTT
TTTCTAAGCTGCCTGTACGGCAGTGAAC	AAGGAAAAATATCTTTATCTCGAAAATGTGAAA
TTTCTAAGCTGCCTGTACGGCAGTGAAC	CATGTCAACGGCTCAGCAATGGTGCTTGTTAAC
TTTCTAAGCTGCCTGTACGGCAGTGAAC	TGGGTGTATTCCTGAGTTTTGCGGCCCTGCTC
TTTCTAAGCTGCCTGTACGGCAGTGAAC	GAAACCAAAACAGGCAAGGACCACTTCGGCAT
TTTCTAAGCTGCCTGTACGGCAGTGAAC	GAGCAGCAAAGCGGCTTCACGGTCGATGGTGT
TTTCTAAGCTGCCTGTACGGCAGTGAAC	GCTCAGCAGACCAAACCATGTGGGGTTATATC
TTTCTAAGCTGCCTGTACGGCAGTGAAC	TGGCTATCTCAACAACAGTTCCAGATTATGCA
TTTCTAAGCTGCCTGTACGGCAGTGAAC	TTTATGTTCAGAATGGTGACACTGTTCCTGTT
TTTCTAAGCTGCCTGTACGGCAGTGAAC	TATTAGTTTCTAACGCAATATCTGAAATGGTT
TTTCTAAGCTGCCTGTACGGCAGTGAAC	CTGATTTTTATCAGGGTAACTTAGCTGCTTTG
TTTCTAAGCTGCCTGTACGGCAGTGAAC	TTTGTTTCGAAATCGAACTCTTCGGGGATTAA
TTTCTAAGCTGCCTGTACGGCAGTGAAC	TCTATCATCCAGCTGGTGCCGAATACCATTGA
TTTCTAAGCTGCCTGTACGGCAGTGAAC	GCAAAGTCTTCACCGAGTGCATGGCGCAGGTT
TTTCTAAGCTGCCTGTACGGCAGTGAAC	ATTCCATCAAACTGCTCAGCGGTTAGCATGCA
TTTCTAAGCTGCCTGTACGGCAGTGAAC	ATATTGGCCCTTGCTCAAGGCAGATTTACAGATTTCTAAGCTGCCTGTACGGCAGTGAACCTGAAAGCCACCTCAATCCGTGGCCCGCAAGCTTTCTAAGCTGCCTGTACGGCAGTGAACTTTAGTCAGTGTGTCGTTCGCCATCGTGATGCTTTCTAAGCTGCCTGTACGGCAGTGAACGTAAGGGCTGGTATGAGCCGAACTATCCAGACTTTCTAAGCTGCCTGTACGGCAGTGAACGTGGTCGCGCCGATACGCACCTTTTTGGTATATTTCTAAGCTGCCTGTACGGCAGTGAACAATAATCAATCTCTTATAGAGGATCACATCATTTTCTAAGCTGCCTGTACGGCAGTGAACTTCAGCCCCTTCCGATAACCCGTAGTCATCGCTTTCTAAGCTGCCTGTACGGCAGTGAACTGTATGCGTGCGTCCCTATGCGAAATTTTCAA
	CTGAAAGCCACCTCAATCCGTGGCCCGCAAGC
TTTCTAAGCTGCCTGTACGGCAGTGAAC	TTTAGTCAGTGTGTCGTTCGCCATCGTGATGC
TTTCTAAGCTGCCTGTACGGCAGTGAAC	GTAAGGGCTGGTATGAGCCGAACTATCCAGAC
TTTCTAAGCTGCCTGTACGGCAGTGAAC	GTGGTCGCGCCGATACGCACCTTTTTGGTATA
TTTCTAAGCTGCCTGTACGGCAGTGAAC	AATAATCAATCTCTTATAGAGGATCACATCAT
TTTCTAAGCTGCCTGTACGGCAGTGAAC	TTCAGCCCCTTCCGATAACCCGTAGTCATCGC
TTTCTAAGCTGCCTGTACGGCAGTGAAC	TGTATGCGTGCGTCCCTATGCGAAATTTTCAA
TTTCTAAGCTGCCTGTACGGCAGTGAAC

>NZ_CP046856|2|2|1277498-1279207|CRISPRCasFinder
TTTCTAAGCTGCCTGTACGGCAGTGAAC	AGGCACTCATTAACACCAGGTAAACAGGTTTA
TTTCTAAGCTGCCTCTACGGCAGTGAAC	CGGAGTCAACCGACCCAACATTACATACTGCA
TTTCTAAGCTGCCTGTACGGCAGTGAAC	TTTCAATCACCGTCACCACTTCTTTTGATTGC
TTTCTAAGCTGCCTGTACGGCAGTGAAC	CATTGGGTTTTGATGTAGTCCTGCAGGTATTT
TTTCTAAGCTGCCTGTACGGCAGTGAAC	AGTCCGGTACTCATCTGACCGTTTCCGAGATA
TTTCTAAGCTGCCTGTACGGCAGTGAAC	ATTTGCAGTGCAGTGCGCAGTGGTACACGGTT
TTTCTAAGCTGCCTGTACGGCAGTGAAC	AAGGAAAAATATCTTTATCTCGAAAATGTGAAA
TTTCTAAGCTGCCTGTACGGCAGTGAAC	CATGTCAACGGCTCAGCAATGGTGCTTGTTAAC
TTTCTAAGCTGCCTGTACGGCAGTGAAC	TGGGTGTATTCCTGAGTTTTGCGGCCCTGCTC
TTTCTAAGCTGCCTGTACGGCAGTGAAC	GAAACCAAAACAGGCAAGGACCACTTCGGCAT
TTTCTAAGCTGCCTGTACGGCAGTGAAC	GAGCAGCAAAGCGGCTTCACGGTCGATGGTGT
TTTCTAAGCTGCCTGTACGGCAGTGAAC	GCTCAGCAGACCAAACCATGTGGGGTTATATC
TTTCTAAGCTGCCTGTACGGCAGTGAAC	TGGCTATCTCAACAACAGTTCCAGATTATGCA
TTTCTAAGCTGCCTGTACGGCAGTGAAC	TTTATGTTCAGAATGGTGACACTGTTCCTGTT
TTTCTAAGCTGCCTGTACGGCAGTGAAC	TATTAGTTTCTAACGCAATATCTGAAATGGTT
TTTCTAAGCTGCCTGTACGGCAGTGAAC	CTGATTTTTATCAGGGTAACTTAGCTGCTTTG
TTTCTAAGCTGCCTGTACGGCAGTGAAC	TTTGTTTCGAAATCGAACTCTTCGGGGATTAA
TTTCTAAGCTGCCTGTACGGCAGTGAAC	TCTATCATCCAGCTGGTGCCGAATACCATTGA
TTTCTAAGCTGCCTGTACGGCAGTGAAC	GCAAAGTCTTCACCGAGTGCATGGCGCAGGTT
TTTCTAAGCTGCCTGTACGGCAGTGAAC	ATTCCATCAAACTGCTCAGCGGTTAGCATGCA
TTTCTAAGCTGCCTGTACGGCAGTGAAC	ATATTGGCCCTTGCTCAAGGCAGATTTACAGA
TTTCTAAGCTGCCTGTACGGCAGTGAAC	CTGAAAGCCACCTCAATCCGTGGCCCGCAAGC
TTTCTAAGCTGCCTGTACGGCAGTGAAC	TTTAGTCAGTGTGTCGTTCGCCATCGTGATGC
TTTCTAAGCTGCCTGTACGGCAGTGAAC	GTAAGGGCTGGTATGAGCCGAACTATCCAGAC
TTTCTAAGCTGCCTGTACGGCAGTGAAC	GTGGTCGCGCCGATACGCACCTTTTTGGTATA
TTTCTAAGCTGCCTGTACGGCAGTGAAC	AATAATCAATCTCTTATAGAGGATCACATCAT
TTTCTAAGCTGCCTGTACGGCAGTGAAC	TTCAGCCCCTTCCGATAACCCGTAGTCATCGC
TTTCTAAGCTGCCTGTACGGCAGTGAAC	TGTATGCGTGCGTCCCTATGCGAAATTTTCAA
TTTCTAAGCTGCCTGTACGGCAGTGAAC

>NZ_CP046856|2|2|1278760-1279207|PILER-CR
	AGGCACTCATTAACACCAGGTAAACAGGTTTA
TTTCTAAGCTGCCTCTACGGCAGTGAAC	CGGAGTCAACCGACCCAACATTACATACTGCA
TTTCTAAGCTGCCTGTACGGCAGTGAAC	TTTCAATCACCGTCACCACTTCTTTTGATTGC
TTTCTAAGCTGCCTGTACGGCAGTGAAC	CATTGGGTTTTGATGTAGTCCTGCAGGTATTT
TTTCTAAGCTGCCTGTACGGCAGTGAAC	AGTCCGGTACTCATCTGACCGTTTCCGAGATA
TTTCTAAGCTGCCTGTACGGCAGTGAAC	ATTTGCAGTGCAGTGCGCAGTGGTACACGGTT
TTTCTAAGCTGCCTGTACGGCAGTGAAC	AAGGAAAAATATCTTTATCTCGAAAATGTGAAA
TTTCTAAGCTGCCTGTACGGCAGTGAAC	CATGTCAACGGCTCAGCAATGGTGCTTGTTAAC
TTTCTAAGCTGCCTGTACGGCAGTGAAC	TGGGTGTATTCCTGAGTTTTGCGGCCCTGCTC
TTTCTAAGCTGCCTGTACGGCAGTGAAC	GAAACCAAAACAGGCAAGGACCACTTCGGCAT
TTTCTAAGCTGCCTGTACGGCAGTGAAC	GAGCAGCAAAGCGGCTTCACGGTCGATGGTGT
TTTCTAAGCTGCCTGTACGGCAGTGAAC	GCTCAGCAGACCAAACCATGTGGGGTTATATC
TTTCTAAGCTGCCTGTACGGCAGTGAAC	TGGCTATCTCAACAACAGTTCCAGATTATGCA
TTTCTAAGCTGCCTGTACGGCAGTGAAC	TTTATGTTCAGAATGGTGACACTGTTCCTGTT
TTTCTAAGCTGCCTGTACGGCAGTGAAC	TATTAGTTTCTAACGCAATATCTGAAATGGTT
TTTCTAAGCTGCCTGTACGGCAGTGAAC	CTGATTTTTATCAGGGTAACTTAGCTGCTTTG
TTTCTAAGCTGCCTGTACGGCAGTGAAC	TTTGTTTCGAAATCGAACTCTTCGGGGATTAA
TTTCTAAGCTGCCTGTACGGCAGTGAAC	TCTATCATCCAGCTGGTGCCGAATACCATTGA
TTTCTAAGCTGCCTGTACGGCAGTGAAC	GCAAAGTCTTCACCGAGTGCATGGCGCAGGTT
TTTCTAAGCTGCCTGTACGGCAGTGAAC	ATTCCATCAAACTGCTCAGCGGTTAGCATGCA
TTTCTAAGCTGCCTGTACGGCAGTGAAC	ATATTGGCCCTTGCTCAAGGCAGATTTACAGATTTCTAAGCTGCCTGTACGGCAGTGAACCTGAAAGCCACCTCAATCCGTGGCCCGCAAGCTTTCTAAGCTGCCTGTACGGCAGTGAACTTTAGTCAGTGTGTCGTTCGCCATCGTGATGCTTTCTAAGCTGCCTGTACGGCAGTGAACGTAAGGGCTGGTATGAGCCGAACTATCCAGACTTTCTAAGCTGCCTGTACGGCAGTGAACGTGGTCGCGCCGATACGCACCTTTTTGGTATATTTCTAAGCTGCCTGTACGGCAGTGAACAATAATCAATCTCTTATAGAGGATCACATCATTTTCTAAGCTGCCTGTACGGCAGTGAACTTCAGCCCCTTCCGATAACCCGTAGTCATCGCTTTCTAAGCTGCCTGTACGGCAGTGAACTGTATGCGTGCGTCCCTATGCGAAATTTTCAA
	CTGAAAGCCACCTCAATCCGTGGCCCGCAAGC
TTTCTAAGCTGCCTGTACGGCAGTGAAC	TTTAGTCAGTGTGTCGTTCGCCATCGTGATGC
TTTCTAAGCTGCCTGTACGGCAGTGAAC	GTAAGGGCTGGTATGAGCCGAACTATCCAGAC
TTTCTAAGCTGCCTGTACGGCAGTGAAC	GTGGTCGCGCCGATACGCACCTTTTTGGTATA
TTTCTAAGCTGCCTGTACGGCAGTGAAC	AATAATCAATCTCTTATAGAGGATCACATCAT
TTTCTAAGCTGCCTGTACGGCAGTGAAC	TTCAGCCCCTTCCGATAACCCGTAGTCATCGC
TTTCTAAGCTGCCTGTACGGCAGTGAAC	TGTATGCGTGCGTCCCTATGCGAAATTTTCAA
TTTCTAAGCTGCCTGTACGGCAGTGAAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP046856.1\|WP_020328498.1\|1275488_1277021_+\|nitric-oxide-reductase-transcriptional-regulator-NorR	unknown	unknown	gnl\|CDD\|235331
NZ_CP046856.1\|WP_020328500.1\|1272642_1273791_-\|NADH:flavorubredoxin-reductase-NorW	unknown	unknown	gnl\|CDD\|179902
NZ_CP046856.1\|WP_020328501.1\|1272263_1272605_-\|DUF1971-domain-containing-protein	unknown	unknown	gnl\|CDD\|226142
NZ_CP046856.1\|WP_158148753.1\|1281937_1283200_-\|type-I-F-CRISPR-associated-protein-Csy1	cas8f	cd09735_cas8f_CAS-I-F	gnl\|CDD\|378220
NZ_CP046856.1\|WP_104408442.1\|1288964_1289171_-\|AlpA-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225848
NZ_CP046856.1\|WP_158148751.1\|1266444_1268196_+\|sensor-histidine-kinase	unknown	unknown	gnl\|CDD\|182581
NZ_CP046856.1\|WP_024374513.1\|1286801_1287791_-\|type-I-F-CRISPR-associated-endonuclease-Cas1	cas1	cd09718_cas1_CAS-I-F	gnl\|CDD\|132676
NZ_CP046856.1\|WP_044363207.1\|1268197_1268878_+\|two-component-system-response-regulator-NarL	unknown	unknown	gnl\|CDD\|182619
NZ_CP046856.1\|WP_020328482.1\|1289300_1289762_+\|DNA-repair-protein-RadC	unknown	unknown	gnl\|CDD\|178801
NZ_CP046856.1\|WP_020328481.1\|1289758_1290193_+\|DUF2787-domain-containing-protein	unknown	unknown	gnl\|CDD\|371323
NZ_CP046856.1\|WP_158148752.1\|1281053_1281941_-\|type-I-F-CRISPR-associated-protein-Csy2	cas5f	pfam09614_cas5f_CAS-I-F	gnl\|CDD\|378221
NZ_CP046856.1\|WP_061056079.1\|1264754_1266128_-\|NarK-family-nitrate/nitrite-MFS-transporter	unknown	unknown	gnl\|CDD\|184994
NZ_CP046856.1\|WP_020328486.1\|1283430_1286805_-\|type-I-F-CRISPR-associated-helicase-Cas3	cas3f	cd09673_cas3f_CAS-I-F	gnl\|CDD\|187804
NZ_CP046856.1\|WP_020328502.1\|1271013_1272180_-\|methyl-accepting-chemotaxis-protein	unknown	unknown	gnl\|CDD\|214599
NZ_CP046856.1\|WP_024374512.1\|1287905_1288700_-\|WYL-domain-containing-protein	WYL	COG2378_WYL_CAS-I:CAS-III	gnl\|CDD\|225253
NZ_CP046856.1\|WP_020328499.1\|1273800_1275291_-\|anaerobic-nitric-oxide-reductase-flavorubredoxin	unknown	unknown	gnl\|CDD\|235475
NZ_CP046856.1\|WP_020328489.1\|1280010_1281042_-\|type-I-F-CRISPR-associated-protein-Csy3	cas7f	cd09677_cas7f_CAS-I-F	gnl\|CDD\|378222
NZ_CP046856.1\|WP_020328490.1\|1279362_1280001_-\|type-I-F-CRISPR-associated-endoribonuclease-Cas6/Csy4	cas6f	pfam09618_cas6f_CAS-I-F	gnl\|CDD\|187870
NZ_CP046856.1\|WP_020328504.1\|1268933_1269581_-\|nitric-oxide-dependent-regulator	unknown	unknown	gnl\|CDD\|225402
NZ_CP046856.1\|WP_020328503.1\|1269869_1270940_+\|CBS-domain-containing-protein	unknown	unknown	gnl\|CDD\|225979

Protein	Function_ID	Function_description	E-value
NZ_CP046856.1\|WP_020328498.1\|1275488_1277021_+\|nitric-oxide-reductase-transcriptional-regulator-NorR	gnl\|CDD\|235331	PRK05022, PRK05022, nitric oxide reductase transcriptional regulator NorR.	0
NZ_CP046856.1\|WP_020328500.1\|1272642_1273791_-\|NADH:flavorubredoxin-reductase-NorW	gnl\|CDD\|179902	PRK04965, PRK04965, NADH:flavorubredoxin reductase NorW.	0
NZ_CP046856.1\|WP_020328501.1\|1272263_1272605_-\|DUF1971-domain-containing-protein	gnl\|CDD\|226142	COG3615, TehB, Uncharacterized protein/domain, possibly involved in tellurite resistance [Inorganic ion transport and metabolism].	2.44859e-38
NZ_CP046856.1\|WP_158148753.1\|1281937_1283200_-\|type-I-F-CRISPR-associated-protein-Csy1	gnl\|CDD\|378220	pfam09611, Cas_Csy1, CRISPR-associated protein (Cas_Csy1). CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) is a widespread family of prokaryotic direct repeats with spacers of unique sequence between consecutive repeats. This entry, typified by YPO2465 of Yersinia pestis, is a CRISPR-associated (Cas) entry strictly associated with the Ypest subtype of CRISPR/Cas locus. It is designated Csy1, for CRISPR/Cas Subtype Ypest protein 1.	2.72317e-122
NZ_CP046856.1\|WP_104408442.1\|1288964_1289171_-\|AlpA-family-transcriptional-regulator	gnl\|CDD\|225848	COG3311, AlpA, Predicted transcriptional regulator [Transcription].	7.39078e-24
NZ_CP046856.1\|WP_158148751.1\|1266444_1268196_+\|sensor-histidine-kinase	gnl\|CDD\|182581	PRK10600, PRK10600, nitrate/nitrite two-component system sensor histidine kinase NarX.	2.03572e-142
NZ_CP046856.1\|WP_024374513.1\|1286801_1287791_-\|type-I-F-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|132676	TIGR03637, cas1_YPEST, CRISPR-associated endonuclease Cas1, subtype I-F/YPEST. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the YPEST subtype of CRISPR/Cas system.	1.5252e-170
NZ_CP046856.1\|WP_044363207.1\|1268197_1268878_+\|two-component-system-response-regulator-NarL	gnl\|CDD\|182619	PRK10651, PRK10651, transcriptional regulator NarL; Provisional.	1.76712e-102
NZ_CP046856.1\|WP_020328482.1\|1289300_1289762_+\|DNA-repair-protein-RadC	gnl\|CDD\|178801	PRK00024, PRK00024, DNA repair protein RadC.	5.38899e-70
NZ_CP046856.1\|WP_020328481.1\|1289758_1290193_+\|DUF2787-domain-containing-protein	gnl\|CDD\|371323	pfam10980, DUF2787, Protein of unknown function (DUF2787). This bacterial family of proteins has no known function.	6.74195e-46
NZ_CP046856.1\|WP_158148752.1\|1281053_1281941_-\|type-I-F-CRISPR-associated-protein-Csy2	gnl\|CDD\|378221	pfam09614, Cas_Csy2, CRISPR-associated protein (Cas_Csy2). CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) is a widespread family of prokaryotic direct repeats with spacers of unique sequence between consecutive repeats. This entry, typified by YPO2464 of Yersinia pestis, is a CRISPR-associated (Cas) entry strictly associated with the Ypest subtype of CRISPR/Cas locus. It is designated Csy2, for CRISPR/Cas Subtype Ypest protein 2.	4.17778e-150
NZ_CP046856.1\|WP_061056079.1\|1264754_1266128_-\|NarK-family-nitrate/nitrite-MFS-transporter	gnl\|CDD\|184994	PRK15034, PRK15034, nitrate/nitrite transport protein NarU; Provisional.	0
NZ_CP046856.1\|WP_020328486.1\|1283430_1286805_-\|type-I-F-CRISPR-associated-helicase-Cas3	gnl\|CDD\|187804	cd09673, Cas3_Cas2_I-F, CRISPR/Cas system-associated protein Cas3/Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas3/Cas2 fusion; This protein includes both DEAH and HD motifs for helicase and N-terminal domain corresponding to Cas2 RNAse; signature gene for Type I and subtype I-F.	0
NZ_CP046856.1\|WP_020328502.1\|1271013_1272180_-\|methyl-accepting-chemotaxis-protein	gnl\|CDD\|214599	smart00283, MA, Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Thought to undergo reversible methylation in response to attractants or repellants during bacterial chemotaxis.	5.57838e-33
NZ_CP046856.1\|WP_024374512.1\|1287905_1288700_-\|WYL-domain-containing-protein	gnl\|CDD\|225253	COG2378, COG2378, Predicted transcriptional regulator [Transcription].	7.01961e-10
NZ_CP046856.1\|WP_020328499.1\|1273800_1275291_-\|anaerobic-nitric-oxide-reductase-flavorubredoxin	gnl\|CDD\|235475	PRK05452, PRK05452, anaerobic nitric oxide reductase flavorubredoxin; Provisional.	0
NZ_CP046856.1\|WP_020328489.1\|1280010_1281042_-\|type-I-F-CRISPR-associated-protein-Csy3	gnl\|CDD\|378222	pfam09615, Cas_Csy3, CRISPR-associated protein (Cas_Csy3). CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) is a widespread family of prokaryotic direct repeats with spacers of unique sequence between consecutive repeats. This entry, typified by YPO2463 of Yersinia pestis, is a CRISPR-associated (Cas) entry strictly associated with the Ypest subtype of CRISPR/Cas locus. It is designated Csy3, for CRISPR/Cas Subtype Ypest protein 3.	0
NZ_CP046856.1\|WP_020328490.1\|1279362_1280001_-\|type-I-F-CRISPR-associated-endoribonuclease-Cas6/Csy4	gnl\|CDD\|187870	cd09739, Cas6_I-F, CRISPR/Cas system-associated RAMP superfamily protein Cas6f. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas6f is an endoribonuclease that generates crRNA; This family is specific for CRISPR/Cas system I-F subtype; Possesses RRM fold; also known as Csy4 family.	9.78006e-59
NZ_CP046856.1\|WP_020328504.1\|1268933_1269581_-\|nitric-oxide-dependent-regulator	gnl\|CDD\|225402	COG2846, COG2846, Regulator of cell morphogenesis and NO signaling [Cell division and chromosome partitioning].	4.76668e-53
NZ_CP046856.1\|WP_020328503.1\|1269869_1270940_+\|CBS-domain-containing-protein	gnl\|CDD\|225979	COG3448, COG3448, CBS-domain-containing membrane protein [Signal transduction mechanisms].	5.1632e-53

>NZ_CP046856.1|WP_020328498.1|1275488_1277021_+|nitric-oxide-reductase-transcriptional-regulator-NorR
MTTLIAQWLHITQDLNSALTRQARFDTLLTTIREVLKCDSSALLLYEDQHFKPLAINGLAKEVLGRRFSINEHPRLEAIARAGDIVRFPSDSNLPDPYDGLIPNHDDKLHIHSCIGLPLLIDDHLIGAITIDAFDPFQFDSLLNHELRFISALAAGGLHTALLLEQLETQTSLPRESYTEKRTLNDDIIGESPEMKSLQQQINAVADTELSVLIMGETGVGKELVANAIHYRSNRANKTLVYLNCAALPESVAESELFGHIKGAFTGAISNRKGKFEQADGGTLFLDEVGELSLELQAKLLRALQYGDIQRVGDDRHIRVNTRIVAATNRILHDEVTAGRFRSDLYHRLSVFPIRVPPLREREEDVILLAGFFAEQLRGKLGLNSIRFSSDLIQALKQYSWPGNVRELEHMIKRAGVLSKARTHSSDIELLVSDFDIETSSSSNSVVMNTTNISPISESGMGLKEATDRYQKKIIVQTLNHNQGNWAATARQLELDSGNLHRLARRLGIK
>NZ_CP046856.1|WP_020328499.1|1273800_1275291_-|anaerobic-nitric-oxide-reductase-flavorubredoxin
MTIHVKNNIHWVGQRDWEVQDFHGTEYKMTKGTSYNSYLIREEKTVLIDTVDHRFSHQFLQNLEMEIDLKSIDFIVVNHAEEDHSGALSALMEKIPNTPIYCTEAAIDSIVGHHHHPEWNFKTVKTGDSIDIGNGKQLVFVEAPMLHWPDSMMTYLTGDAVLFSNDAFGQHYCDERLFNDEVDQNELMDQCLRYYSNILTPFSSLVTAKIKEVLSFNLPVDMIATSHGIVWRDNPAQIIEQYLEWADNYQEDRITIFYDSMSNNTRMMADAIAQGIHDVDSGVAVKVFNVSKHDKNEILANVFRSKGILVGSSTMNNVMMPKVAGMLEEITGLRFKAKKAAAFGSYGWNGGAVDRIHARLTDAGFETAISLKTKWRPDGKAMRECREHGQAIAKLWVNNSLSRSTKVHSTALEPASQAPQVNPRKVEEVQLGVQQEQLHPEGCQCMICTVCNWVYDPSLGEPNQGVEPGTVWSDIPDYFLCPECHLGKDVFVEHKA
>NZ_CP046856.1|WP_020328500.1|1272642_1273791_-|NADH:flavorubredoxin-reductase-NorW
MQTPIVIIGSGFAAYQLVKTVRRVDAHIPIQVFTAEDGTEYNKPDLSHVFSRKQTALDLVVKSGDVFAKEHNIELFANTKVEKVDVDAQQVTANGQVYPYGKLVFATGAKAFVPSMNGDGVRDVLTLNSLQEYQAAETQISRAKRVLIIGGGLIGVEIAMDLATSGKNVTVIEPNTRLLANLIPEFIALPIERQLKQQGVQLALETSVLAVDRSENGSTATLSSGRTVETDIVISAAGLCANTQLAKEAAIRVNKGIVVDSCLQTSIRNVFALGDCAEIQERMMPYLQPIVLSANVLGKQLLGQDAELVLPPMMVKVKTPSYPIQLAGTVNGVENWEVSISAPGIVAKAKDDNGHLVGFVVTSEQVTQAFPLLRELSKSSGR
>NZ_CP046856.1|WP_020328501.1|1272263_1272605_-|DUF1971-domain-containing-protein
MSHLRIPKEWTIQRSTPFFTNDNVPKALLSHHNTAEGVFGQLCVMEGQVTYYGFTDANATEPEVVVVINAGQFATSPPQYWHRIELSDDAQFNINFWSNSNKTNQPMYQSQLK
>NZ_CP046856.1|WP_020328502.1|1271013_1272180_-|methyl-accepting-chemotaxis-protein
MRSLFIRMRFVHWLGVIILVMNALFLTENITSQILQGIVVIFLIIHDIDEKIWGVDSLKNVTMYMKNFERKDLSTPCNVNSQYNSEITNVLNVINTFRRNVKLALEEIQQQAMASDEISTQLKYKSTNISDRILRQDASVSSLNEQLEKLDNTSIALKVKAEETQMQVKSTHAKLEHSVGMMDNLVQGLDQYLESNHQLQKSFNQLSAQTLSIENVVSVIAKLADQTNLLALNAAIEAARAGNQGRGFAVVADEVRRLAQSTQESLHEINSIVSEISTTVKMAGAQMSSQTSTITLLSENTIKSQTEIRIANESIGSVLSFIEHNESEQEVNIHTVSQLVGEANAKVDELKQLSSSNAIDCEALIKQGINLTKVTENVVEKLSMFKTA
>NZ_CP046856.1|WP_020328503.1|1269869_1270940_+|CBS-domain-containing-protein
MSHFDRLLNLSYIAIPVLLTSAIIAVLANYGHTTSATPLLIASIGASVTIIFVIPSSPMGKTWPLIGGHFTAALVGIGLSTAFDNVIVLITLSITSTIIIMIVLKCVHPPGVATALVPVLSNTSQPDLNFLLDPVLLNVLPLALSGITYRRWITMRSSNTTEKSSMNSKSAHEKSSLYFDELHEVLETRNEWLDIDEKTLDEIFKQTHLLALEHKSQKLTCKHVMTENILALTEHDSVYEGLNTLQKNKFSAIPIINSDKEIVGIFSLVDFLLYVEKRKINSFVGLYLLAKKKTSKTIGQYMKRNPISMHEDQHVARLIPYLTSGFHHIPITNDHNQLIGMVTQSDLIEFLYNLKQ
>NZ_CP046856.1|WP_020328504.1|1268933_1269581_-|nitric-oxide-dependent-regulator
MNVNSITLCDIIKNIPGSIKILKSNNINAYINLRKTLNEILVIDDIAKYSDMIDKLNNLSRDNKELLKFCDIPHQELIKYIIANFHIKHRDQLNQAIELAKRVETAHYDHPQCPIGLSECLEGIANDLCSHMEKEEQILFPMISQGIYPDGPIFVMEQDHDDHIQALGELMTLVNYLEVHEDACQSWIKLYSLLEQFESDILTHIALENNILFKH
>NZ_CP046856.1|WP_044363207.1|1268197_1268878_+|two-component-system-response-regulator-NarL
MIKELTFTNADASTILLIDDHPMLRSGIKQLLNTRKHLTVVAEASNGLQGVEYAIDYEPDLILLDINMPELDGLKTLKLLRDKHITSKIIIFTVSNYDEDVSKAIKLGADGYLLKDMEPEELLASIENACLGKTVISPELTSILVGNLREKKQEKLTNVTIDVLSTREQDILKNIAIGLSNKMIANKLFISESTVKVHVKSILKKLQLRSRVEAAVWVHQEKIRFE
>NZ_CP046856.1|WP_158148751.1|1266444_1268196_+|sensor-histidine-kinase
MNFFNISITKKISFFILMLCSISLSGMFISLITVDNIQGRTHIVNQIGSIRMLIYKSILSTDKSITSKNIIKINTKLNNPNIIKYMIKSGLNDEHGNLLAFFQEKIENQSYESIRSNSDEFVKIIDNLIYNVELNTENNIKSLENIQKVFSIMIIIFGIYAIGNLYSRLFKPWISILDISRSIKSGDFSKKFSVQRHKDEMNELGDSINLMSESLKETYINLENIVYHKTEDLNRKNRYLDFLYRACKKFNNEQYSCDMLAPLIKELIELTGIHKVTILINDYQESDNTQTFDFGSLSRPEFCKNISCNLCFDKKKVFIENLSEITIKLKDSSHDYGRIVISNNSKSPLNTENEQLIIAFSELLTQSLSVFYKVQQDQQLLILKERNTIARELHDSIAQSLSCLKIKLSILQMDLSHLDEEQISIIGEMREEVNVAYCQLRELLTTFRLKLDGLGFLPALENTVKEYNQKIGTKINLNYEIPANKISAHHSIHLIQIIRELLNNIYKHAHASDVTLDLSMKGNDVSLIILDDGCGFSTSQENSRYGLKIIGDRAQSLSGKWDIISSPGKGTEFYLTFPIYSRV
>NZ_CP046856.1|WP_061056079.1|1264754_1266128_-|NarK-family-nitrate/nitrite-MFS-transporter
MESSGRVSAHSIKQWFPEDRQFWLSQGQYIAKRNLWISIPCLLLSFCVWMIFSAVAVNLPKVGFSFSTEQLFLLTALPSVSGAIGRIPYSFTISIFGGRRWTAFSTLMLVVPMVWLGIAISNPHTSYSTFVMIALLCGLGGANFASSMANISFFYPKEMQGSALGLNGGLGNLGVSVMQLVVPIAISVQWFTSQSEGPHLQNAAWIWVPLILLFSLISWFGMNDIENAKASFKEQVKVLKQGHLWLMSLLYLSAFGSFIGFSAGFAMLSQTQFPEVEVLKFAFIGPLIGALMRPVGGAWSDKFGGIKVTFLNFVLMALLTVLIFFTIPSESTSGSFVIFLIIFMGLFACSGIGSGSTFQMIAVLFRRIVTQQARMAGLDEETITRKTGTDTAAALGFISAIGAFGGFFIPQAFGLSLSLTGSASSALILFLFFYVVCSIITWFVYGRNIENGYATKK
>NZ_CP046856.1|WP_020328490.1|1279362_1280001_-|type-I-F-CRISPR-associated-endoribonuclease-Cas6/Csy4
MNYYQEITLLPDADIALGFLWQNVFQQVHIALVEHKVASNQSLVAVGFPDYRQAKFPLGAKLRLFAKEQATLEKLAIHRWLTRLEDYVHIKGIKPVPNDVTYVSFVRKQVKSPERIERDMQQKAELWAAKSGKPLVECLADLRQSKPTALCSLPFIYLHSQQTKQRSPEKNSKFPLFIQMQQQSTSQDGGFDCYGLSSKANGQSALATVPHF
>NZ_CP046856.1|WP_020328489.1|1280010_1281042_-|type-I-F-CRISPR-associated-protein-Csy3
MAKNNDTASVLAFEKKLVPSDGYLFGCQWETKAQATPLALQEKSVRGTISNRLKSAVKNDPAKLNAEVEKANLQRVDACALGQDHDTLKLHFTLKVLGGLAQPSACNNALFKQSYSTAVSKYITQYGCFELAKRYATNLANARFLWRNRVGAEEIEVQVKALNKEAEQAWTFNAKQFSTKHFDHNDSQINSLADRIAQALASETDHLMLQIDCYAKVGKAQEVYPSEELVLDKGNSKTKKSKILYAVNEHAAMHSQKIGNALRSIDTWYPDYASEEQSAGAIAIEPYGAVTNLGKAFRTPKDKQDFYTFFDKWARGESLPREEDEHYVMAVLVRGGVFGESDK
>NZ_CP046856.1|WP_158148752.1|1281053_1281941_-|type-I-F-CRISPR-associated-protein-Csy2
MNVLILPHLKIHNANALSSPFTIGFPAMTAWLGFVHALERKLSQAGLSDLMLHSAAVVSHRCDVQTHKGEGDFVHSIIGTGNPLDKDGSRSAFIEEARCHLDVSLVIEWSGNEEQVQQPEFTEQLQAVIATMKVAGGDVFSIGKPSIKSVITEQDTAQVLRQLMPGYVLIERRDLMLEAMKQGADALDALLGYLTVHHHCEQLEDQSVVWHSQRKTSGWIVPIATGFQGISPLGTAKNQRDPSVPHRFAESVVTLGEFVMAHKIKHLDDILWQYNPDLENDLYLCQQVNAINEHQ
>NZ_CP046856.1|WP_158148753.1|1281937_1283200_-|type-I-F-CRISPR-associated-protein-Csy1
MIDPAITAFFAERKEAWLKKNISAAMSDAEVLEKQQECEQNFLLDNWLSDAAKRAGQISVASHPCTFSHPSARKNKNGYVSSIIAKNKPRIDGFLRSGNVSVEQDALGNAAALDVYKFLSLEMSDQRSLLVHIEQESDLARQLLDIPSCEYQALRDGFLKMIDSDQASVSSSKIKQVYFPIADGEYHLLSLLTHSGHLFELRKRLDALRFGDAVKEARECKKTNHFHPAGYQEIFGLTTIGFGGTKPQNISVLNNQNAGKAHLLVSIPPELTPRDIRLPRTDFFKESFTAWQAKEVLEALHRLFQTDYNNVNLRDGRDYRIQQYVDLVIEKMWQVRLFLEAYSGELSSALPLEQKIWLYPEFADLRHQEDEWLDKIIRHIARGLINHYSRSKVITSPITLADQELLAIEKVVASNKENLR
>NZ_CP046856.1|WP_020328486.1|1283430_1286805_-|type-I-F-CRISPR-associated-helicase-Cas3
MMVTFVSQCEKNALKKTRRVLDAFANRIGDNTWQTLITEEGLLTVKKMLCQTASRSTAVSCHWIRSRSRSQFLWVVGNKKKFNAEGYVPVNSTEKDLLNSEFENDWKYLPLIKAITGMAALLHDWGKASLLFQEKLNPEIKNKHKGDPLRHEWISCLLFQQWISNQNHERLDEVWLNSLIDKGIDETCFNTNVLQKEKALAELPTAAALIAWLIVSHHRLPLPKEKDLCDRQREVDSSSLSDLLARITPAWGYENRFDEYNALLPKCFEFPLGLLSNSSIWLAELKRRAKDLLHHLPLLDQAMNDGSWRGILHHARLCLMLGDHYYSSQPNDHQWKASIELYANTDPATKARKQKLDEHLVNVAKVAVNTVKLLPFFETEPLKATELSELVPKANTPKAFRWQDKAVRKINEWREHTEDKSQGYFVVNMASTGCGKTIANAKIMQALSEEGESLRFILALGLRTLTLQTGDEYKERLKLQESDLAVLIGSKAISELHKSGKAVEKDDIEPEQADAGSESLESLQDENDVLDWQGVLPEEELTTVLTKEKDRKLLYAPVLVCTIDHIMAATETKRGGRYILPCLRLMSSDLVIDEIDDFTGDDLIAIGRLVHLAAMLGRKVMISSATIPPDLALGLYNAYRQGWKVFAASRDRVSTVNCVYVDEFSADVQMVGCDDADLAAYEAFQQRFVSKRVDKLKQQVAKRKADIIPCIKQNDQPLEQQYFEIVKQAILAKHQHHNTLEPESQSRVSFGVVRVANIQPCVELTQYLLSCDWPADTEVRCMAYHSQQVLLLRHEQEKHLDEVLKRKEKTGELPEAFAHPVIRDHLTTCQAKNLIFILVATPVEEVGRDHDFDWAVIEPSSFRSIIQMAGRVRRHRDGEIQEPNIGLLQYNVKGFRGGAERVFNHPGYETDSTTQLVTHDLSELVDEKSLLQAVNAIVRIQKRAVLEPRNNLADLEHFATAKTLGNEQIGKPQQVNISRQERYNRNRRSSSPQSCWHEHLHGHIHGYWWLTALPQYFKRFRKSEPTVQIYLVKKARSIEFCLREEQGGLLPIERTLNIEHLPLALEQEQKLWLQRDYSELVSLYSPNAEQEFATSVRYGEISFIYREGNQQYSYNDQLGLVRTG
>NZ_CP046856.1|WP_024374513.1|1286801_1287791_-|type-I-F-CRISPR-associated-endonuclease-Cas1
MDDLSPSDLKVILHSKRANVYYLEYCRVMQKDGRVLYLTEADKENLYFNIPIANTTVLMLGNGTSITQAAMRMLSQAGVLVGFCGGGGTPLHMACEVEWFTPQSEYRPTEYLQGWLSFWFDDEKRLAAAKQFQNARIDYLQRVWRSDRELTLEKFNLQDEVIKQSLDTFHQRTEAASKPADLLLTEAHLTKALYKYAANNTGKQGFTRQHQPDKKCTDKANDFLNHGNYLAYGLAASCLWVLGIPHGFAVMHGKTRRGALVFDVADLIKDAIVLPWAFVCAKENASEQEFRQQILQAFIEHKALDFMFDTVKHVALQGKEEEEREAHQL
>NZ_CP046856.1|WP_024374512.1|1287905_1288700_-|WYL-domain-containing-protein
MLALWQGYIRNKDLVDQFSITRQQAYQDIRAYQKDYPERLKKMASGPYQFSTQYLSEAPKNSLERYLQWLSSGQFYAPQSSINTALGEYCSVPQRYVAPQVIAALTEAIRQQKRVELGYVSLSNPEWEGRIFHPHTFVKTGLRWHVRGYCEKSQDYRDLVLSRCRGDAELLDASEHTKEDDRVWNTQVDLIFAPDPRLNDEQKEVIAHDYQMENGQLRITTRAALVDYLLKEMQVKTHYLEGTPEAQQLILVNPRDVKPWLFER
>NZ_CP046856.1|WP_104408442.1|1288964_1289171_-|AlpA-family-transcriptional-regulator
MRTTDIGERPMRFLKLKEVMEKTALSRSAIYRKMNDGEFPQSVSLGDRAVAWLESEVDEWMSGCVLAR
>NZ_CP046856.1|WP_020328482.1|1289300_1289762_+|DNA-repair-protein-RadC
MTDYTKEQRYQENQILEHAAEILAHRYVRGDALTNPDATKEYIRCKLGAYEREVFALLLLDNQNRLIEFKELFHGTIDAASVYPREVVKVVLEANAAAVILAHNHPSGDSTPSQADRRITERLKDALTLVDVRVLDHIVVGKDSVSFAERGWL
>NZ_CP046856.1|WP_020328481.1|1289758_1290193_+|DUF2787-domain-containing-protein
MIELHSGDIHLAPSLHAALEKLLRLYSIPDTAERIVLNGRQTAYYSHRQGLHPIEVQFKRESPSKAWQVVCMTSFSYPEESSILVEPELYFHLLNRWCYQPNAGAADLSHPEVLELLMVWMNALARHLSRNVFDELELSVVRQF

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP046856_2	2.10\|1278008\|32\|NZ_CP046856\|CRT,PILER-CR,CRISPRCasFinder	1278008-1278039	32	MG197996	Escherichia phage APC_JM3.2, complete genome	15133-15164	2	0.938
NZ_CP046856_2	2.6\|1277766\|32\|NZ_CP046856\|CRT,PILER-CR,CRISPRCasFinder	1277766-1277797	32	MG592416	Vibrio phage 1.032.O._10N.261.54.F5, partial genome	35472-35503	6	0.812
NZ_CP046856_2	2.6\|1277766\|32\|NZ_CP046856\|CRT,PILER-CR,CRISPRCasFinder	1277766-1277797	32	MG592406	Vibrio phage 1.022.O._10N.286.45.A10, partial genome	32728-32759	7	0.781
NZ_CP046856_2	2.12\|1278128\|32\|NZ_CP046856\|CRT,PILER-CR,CRISPRCasFinder	1278128-1278159	32	NZ_CP045721	Pantoea eucalypti strain LMG 24197 plasmid unnamed1, complete sequence	372289-372320	7	0.781
NZ_CP046856_2	2.12\|1278128\|32\|NZ_CP046856\|CRT,PILER-CR,CRISPRCasFinder	1278128-1278159	32	NZ_CP022517	Pantoea vagans strain FBS135 plasmid pPant1, complete sequence	34833-34864	7	0.781
NZ_CP046856_2	2.15\|1278308\|32\|NZ_CP046856\|CRT,PILER-CR,CRISPRCasFinder	1278308-1278339	32	KF302034	UNVERIFIED: Pseudoalteromonas phage HM1, complete genome	37671-37702	7	0.781
NZ_CP046856_2	2.15\|1278308\|32\|NZ_CP046856\|CRT,PILER-CR,CRISPRCasFinder	1278308-1278339	32	MF370964	Pseudoalteromonas phage SL20, complete genome	89254-89285	7	0.781
NZ_CP046856_2	2.21\|1278668\|32\|NZ_CP046856\|CRT,PILER-CR,CRISPRCasFinder	1278668-1278699	32	AY682195	Lactobacillus plantarum bacteriophage LP65, complete genome	124763-124794	7	0.781
NZ_CP046856_2	2.21\|1278668\|32\|NZ_CP046856\|CRT,PILER-CR,CRISPRCasFinder	1278668-1278699	32	NC_006565	Lactobacillus phage LP65, complete genome	124763-124794	7	0.781
NZ_CP046856_2	2.24\|1278848\|32\|NZ_CP046856\|CRT,CRISPRCasFinder,PILER-CR	1278848-1278879	32	NZ_CP022416	Sulfitobacter pseudonitzschiae strain SMR1 plasmid pSMR1-1, complete sequence	15131-15162	7	0.781
NZ_CP046856_2	2.5\|1277706\|32\|NZ_CP046856\|CRT,PILER-CR,CRISPRCasFinder	1277706-1277737	32	NZ_CP017104	Rhizobium gallicum strain IE4872 plasmid pRgalIE4872c, complete sequence	255721-255752	8	0.75
NZ_CP046856_2	2.12\|1278128\|32\|NZ_CP046856\|CRT,PILER-CR,CRISPRCasFinder	1278128-1278159	32	JF974303	Synechococcus phage MRHenn-2013a, * SEQUENCING IN PROGRESS *, 9 unordered pieces	47615-47646	8	0.75
NZ_CP046856_2	2.12\|1278128\|32\|NZ_CP046856\|CRT,PILER-CR,CRISPRCasFinder	1278128-1278159	32	KC310806	Synechococcus phage S-CBP2, complete genome	21321-21352	8	0.75
NZ_CP046856_2	2.12\|1278128\|32\|NZ_CP046856\|CRT,PILER-CR,CRISPRCasFinder	1278128-1278159	32	NC_008760	Polaromonas naphthalenivorans CJ2 plasmid pPNAP04, complete sequence	124589-124620	8	0.75
NZ_CP046856_2	2.14\|1278248\|32\|NZ_CP046856\|CRT,PILER-CR,CRISPRCasFinder	1278248-1278279	32	KT997854	Uncultured Mediterranean phage uvDeep-CGR2-AD10-C281, complete genome	3229-3260	8	0.75
NZ_CP046856_2	2.20\|1278608\|32\|NZ_CP046856\|CRT,PILER-CR,CRISPRCasFinder	1278608-1278639	32	KY971611	Pseudomonas phage PspYZU08, complete genome	39070-39101	8	0.75
NZ_CP046856_2	2.21\|1278668\|32\|NZ_CP046856\|CRT,PILER-CR,CRISPRCasFinder	1278668-1278699	32	NZ_CP020447	Paracoccus yeei strain FDAARGOS_252 plasmid unnamed7, complete sequence	139213-139244	8	0.75
NZ_CP046856_2	2.4\|1277646\|32\|NZ_CP046856\|CRT,PILER-CR,CRISPRCasFinder	1277646-1277677	32	MH460463	Dickeya phage vB_DsoM_AD1, complete genome	98992-99023	9	0.719
NZ_CP046856_2	2.12\|1278128\|32\|NZ_CP046856\|CRT,PILER-CR,CRISPRCasFinder	1278128-1278159	32	NC_012858	Rhizobium leguminosarum bv. trifolii WSM1325 plasmid pR132502, complete sequence	46360-46391	9	0.719
NZ_CP046856_2	2.12\|1278128\|32\|NZ_CP046856\|CRT,PILER-CR,CRISPRCasFinder	1278128-1278159	32	NZ_CP044333	Methylocystis parvus strain BRCS2 plasmid unnamed2, complete sequence	134239-134270	9	0.719
NZ_CP046856_2	2.14\|1278248\|32\|NZ_CP046856\|CRT,PILER-CR,CRISPRCasFinder	1278248-1278279	32	MN694445	Marine virus AFVG_250M317, complete genome	28760-28791	9	0.719
NZ_CP046856_2	2.14\|1278248\|32\|NZ_CP046856\|CRT,PILER-CR,CRISPRCasFinder	1278248-1278279	32	MN694695	Marine virus AFVG_250M866, complete genome	10531-10562	9	0.719
NZ_CP046856_2	2.14\|1278248\|32\|NZ_CP046856\|CRT,PILER-CR,CRISPRCasFinder	1278248-1278279	32	MN694780	Marine virus AFVG_250M331, complete genome	10555-10586	9	0.719
NZ_CP046856_2	2.16\|1278368\|32\|NZ_CP046856\|CRT,PILER-CR,CRISPRCasFinder	1278368-1278399	32	AP013395	Uncultured Mediterranean phage uvMED DNA, complete genome, group G15, isolate: uvMED-CGR-C85-MedDCM-OCT-S43-C18	35795-35826	9	0.719
NZ_CP046856_2	2.16\|1278368\|32\|NZ_CP046856\|CRT,PILER-CR,CRISPRCasFinder	1278368-1278399	32	AP013394	Uncultured Mediterranean phage uvMED DNA, complete genome, group G15, isolate: uvMED-CGR-C85-MedDCM-OCT-S24-C7	14619-14650	9	0.719
NZ_CP046856_2	2.17\|1278428\|32\|NZ_CP046856\|CRT,PILER-CR,CRISPRCasFinder	1278428-1278459	32	NZ_CP023469	Salmonella enterica subsp. enterica strain BAA-1586 plasmid pSalMiami, complete sequence	8230-8261	9	0.719
NZ_CP046856_2	2.19\|1278548\|32\|NZ_CP046856\|CRT,PILER-CR,CRISPRCasFinder	1278548-1278579	32	NZ_CP018064	Rhodococcus sp. 2G plasmid p1, complete sequence	284127-284158	9	0.719
NZ_CP046856_2	2.18\|1278488\|32\|NZ_CP046856\|CRT,PILER-CR,CRISPRCasFinder	1278488-1278519	32	NZ_CP021408	Celeribacter manganoxidans strain DY25 plasmid pDY25-D, complete sequence	33802-33833	10	0.688
NZ_CP046856_2	2.24\|1278848\|32\|NZ_CP046856\|CRT,CRISPRCasFinder,PILER-CR	1278848-1278879	32	NZ_CP032676	Rhodococcus rhodochrous strain ATCC BAA870 plasmid pNit, complete sequence	306622-306653	11	0.656

1. spacer 2.10|1278008|32|NZ_CP046856|CRT,PILER-CR,CRISPRCasFinder matches to MG197996 (Escherichia phage APC_JM3.2, complete genome) position: , mismatch: 2, identity: 0.938

tgggtgtattcctgagttttgcggccctgctc	CRISPR spacer
tgggtgaactcctgagttttgcggccctgctc	Protospacer
****** *.***********************

2. spacer 2.6|1277766|32|NZ_CP046856|CRT,PILER-CR,CRISPRCasFinder matches to MG592416 (Vibrio phage 1.032.O._10N.261.54.F5, partial genome) position: , mismatch: 6, identity: 0.812

agtccggtactcatctgaccgtttccgagata	CRISPR spacer
agcgtcggactcatctgaccgttaccgagata	Protospacer
**. . * *************** ********

3. spacer 2.6|1277766|32|NZ_CP046856|CRT,PILER-CR,CRISPRCasFinder matches to MG592406 (Vibrio phage 1.022.O._10N.286.45.A10, partial genome) position: , mismatch: 7, identity: 0.781

agtccggtactcatctgaccgtttccgagata	CRISPR spacer
aacgttggactcatctgaccgttaccgagata	Protospacer
*.. . * *************** ********

4. spacer 2.12|1278128|32|NZ_CP046856|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP045721 (Pantoea eucalypti strain LMG 24197 plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.781

gagcagca-aagcggcttcacggtcgatggtgt	CRISPR spacer
-tgcgtcaccagcggcttcgcggtcaatggtgt	Protospacer
  **. **  *********.*****.*******

5. spacer 2.12|1278128|32|NZ_CP046856|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP022517 (Pantoea vagans strain FBS135 plasmid pPant1, complete sequence) position: , mismatch: 7, identity: 0.781

gagcagca-aagcggcttcacggtcgatggtgt	CRISPR spacer
-tgcgtcaccagcggcttcgcggtcaatggtgt	Protospacer
  **. **  *********.*****.*******

6. spacer 2.15|1278308|32|NZ_CP046856|CRT,PILER-CR,CRISPRCasFinder matches to KF302034 (UNVERIFIED: Pseudoalteromonas phage HM1, complete genome) position: , mismatch: 7, identity: 0.781

tttatgt---tcagaatggtgacactgttcctgtt	CRISPR spacer
---aggtggataagaatggtgacaaggttcctgtt	Protospacer
   * **   * ************  *********

7. spacer 2.15|1278308|32|NZ_CP046856|CRT,PILER-CR,CRISPRCasFinder matches to MF370964 (Pseudoalteromonas phage SL20, complete genome) position: , mismatch: 7, identity: 0.781

tttatgt---tcagaatggtgacactgttcctgtt	CRISPR spacer
---aagtggataagaatggtgacaaggttcctgtt	Protospacer
   * **   * ************  *********

8. spacer 2.21|1278668|32|NZ_CP046856|CRT,PILER-CR,CRISPRCasFinder matches to AY682195 (Lactobacillus plantarum bacteriophage LP65, complete genome) position: , mismatch: 7, identity: 0.781

attccatcaaactgctcagcggttagcatgca	CRISPR spacer
cttccatcgaactgctcagcgtttacaacgct	Protospacer
 *******.************ ***  *.**

9. spacer 2.21|1278668|32|NZ_CP046856|CRT,PILER-CR,CRISPRCasFinder matches to NC_006565 (Lactobacillus phage LP65, complete genome) position: , mismatch: 7, identity: 0.781

attccatcaaactgctcagcggttagcatgca	CRISPR spacer
cttccatcgaactgctcagcgtttacaacgct	Protospacer
 *******.************ ***  *.**

10. spacer 2.24|1278848|32|NZ_CP046856|CRT,CRISPRCasFinder,PILER-CR matches to NZ_CP022416 (Sulfitobacter pseudonitzschiae strain SMR1 plasmid pSMR1-1, complete sequence) position: , mismatch: 7, identity: 0.781

tttagtcagtgtgtcgttcgccatcgtgatgc	CRISPR spacer
tttgacgaatgtgtcgtttgccatcgtggtgc	Protospacer
***... *.*********.*********.***

11. spacer 2.5|1277706|32|NZ_CP046856|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP017104 (Rhizobium gallicum strain IE4872 plasmid pRgalIE4872c, complete sequence) position: , mismatch: 8, identity: 0.75

cattgggttttgatgtagtcctgcaggtattt	CRISPR spacer
ggttgggttttgaggtattcctgcaggaagcg	Protospacer
 .*********** *** ********* * .

12. spacer 2.12|1278128|32|NZ_CP046856|CRT,PILER-CR,CRISPRCasFinder matches to JF974303 (Synechococcus phage MRHenn-2013a, *** SEQUENCING IN PROGRESS ***, 9 unordered pieces) position: , mismatch: 8, identity: 0.75

gagcagcaaagcggcttcacggtcgatggtgt	CRISPR spacer
acgggcctcagcggcttcacggtcgctggtgt	Protospacer
. * . *  **************** ******

13. spacer 2.12|1278128|32|NZ_CP046856|CRT,PILER-CR,CRISPRCasFinder matches to KC310806 (Synechococcus phage S-CBP2, complete genome) position: , mismatch: 8, identity: 0.75

gagcagcaaagcggcttcacggtcgatggtgt	CRISPR spacer
acgggcctcagcggcttcacggtcgctggtgt	Protospacer
. * . *  **************** ******

14. spacer 2.12|1278128|32|NZ_CP046856|CRT,PILER-CR,CRISPRCasFinder matches to NC_008760 (Polaromonas naphthalenivorans CJ2 plasmid pPNAP04, complete sequence) position: , mismatch: 8, identity: 0.75

gagcagcaaagcggcttcacggtcgatggtgt	CRISPR spacer
taccagcacagcggcttctcggtcgacgccgg	Protospacer
 * ***** ********* *******.* .*

15. spacer 2.14|1278248|32|NZ_CP046856|CRT,PILER-CR,CRISPRCasFinder matches to KT997854 (Uncultured Mediterranean phage uvDeep-CGR2-AD10-C281, complete genome) position: , mismatch: 8, identity: 0.75

tggctatctcaacaacagttccagattatgca	CRISPR spacer
caacttgcacaataacagtttcagattatgca	Protospacer
...**  * ***.*******.***********

16. spacer 2.20|1278608|32|NZ_CP046856|CRT,PILER-CR,CRISPRCasFinder matches to KY971611 (Pseudomonas phage PspYZU08, complete genome) position: , mismatch: 8, identity: 0.75

gcaaagt-cttcaccgagtgcatggcgcaggtt	CRISPR spacer
-tgcagtacttcaccgagagcatggcgaaggac	Protospacer
 .. *** ********** ******** *** .

17. spacer 2.21|1278668|32|NZ_CP046856|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP020447 (Paracoccus yeei strain FDAARGOS_252 plasmid unnamed7, complete sequence) position: , mismatch: 8, identity: 0.75

attccatcaaactgctcagcggttagcatgca	CRISPR spacer
taacggtcaaactgctccgcggtaagcatgcc	Protospacer
   * .*********** ***** *******

18. spacer 2.4|1277646|32|NZ_CP046856|CRT,PILER-CR,CRISPRCasFinder matches to MH460463 (Dickeya phage vB_DsoM_AD1, complete genome) position: , mismatch: 9, identity: 0.719

tttcaatcaccgtcaccacttcttttgattgc	CRISPR spacer
tgatttgcaccgtggccacttcttttgatttc	Protospacer
*  .   ****** .*************** *

19. spacer 2.12|1278128|32|NZ_CP046856|CRT,PILER-CR,CRISPRCasFinder matches to NC_012858 (Rhizobium leguminosarum bv. trifolii WSM1325 plasmid pR132502, complete sequence) position: , mismatch: 9, identity: 0.719

gagcagcaaagcggcttcacggtcgatggtgt	CRISPR spacer
ctcgagcgaagcggcttcacggtcgttgccgg	Protospacer
    ***.***************** ** .*

20. spacer 2.12|1278128|32|NZ_CP046856|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP044333 (Methylocystis parvus strain BRCS2 plasmid unnamed2, complete sequence) position: , mismatch: 9, identity: 0.719

gagcagcaaagcggcttcacggtcgatggtgt	CRISPR spacer
gcgcagcagatcggcttcacggtcgtatcgat	Protospacer
* ******.* **************     .*

21. spacer 2.14|1278248|32|NZ_CP046856|CRT,PILER-CR,CRISPRCasFinder matches to MN694445 (Marine virus AFVG_250M317, complete genome) position: , mismatch: 9, identity: 0.719

tggctatctcaacaacagttccagattatgca	CRISPR spacer
acaaagcctcaataacagttccagagtatgca	Protospacer
  .  ..*****.************ ******

22. spacer 2.14|1278248|32|NZ_CP046856|CRT,PILER-CR,CRISPRCasFinder matches to MN694695 (Marine virus AFVG_250M866, complete genome) position: , mismatch: 9, identity: 0.719

tggctatctcaacaacagttccagattatgca	CRISPR spacer
acaaagcctcaataacagttccagagtatgca	Protospacer
  .  ..*****.************ ******

23. spacer 2.14|1278248|32|NZ_CP046856|CRT,PILER-CR,CRISPRCasFinder matches to MN694780 (Marine virus AFVG_250M331, complete genome) position: , mismatch: 9, identity: 0.719

tggctatctcaacaacagttccagattatgca	CRISPR spacer
ataaagcctcaataacagttccagagtatgca	Protospacer
  .  ..*****.************ ******

24. spacer 2.16|1278368|32|NZ_CP046856|CRT,PILER-CR,CRISPRCasFinder matches to AP013395 (Uncultured Mediterranean phage uvMED DNA, complete genome, group G15, isolate: uvMED-CGR-C85-MedDCM-OCT-S43-C18) position: , mismatch: 9, identity: 0.719

tattagtttctaacgcaatatctgaaatggtt	CRISPR spacer
gaccatcctcaaacgcaatatctgcaatggtc	Protospacer
 *..* ..** ************* ******.

25. spacer 2.16|1278368|32|NZ_CP046856|CRT,PILER-CR,CRISPRCasFinder matches to AP013394 (Uncultured Mediterranean phage uvMED DNA, complete genome, group G15, isolate: uvMED-CGR-C85-MedDCM-OCT-S24-C7) position: , mismatch: 9, identity: 0.719

tattagtttctaacgcaatatctgaaatggtt	CRISPR spacer
gaccatcctcaaacgcaatatctgcaatggtc	Protospacer
 *..* ..** ************* ******.

26. spacer 2.17|1278428|32|NZ_CP046856|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP023469 (Salmonella enterica subsp. enterica strain BAA-1586 plasmid pSalMiami, complete sequence) position: , mismatch: 9, identity: 0.719

ctgatttttatcagggtaacttagctgctttg	CRISPR spacer
gtcatttttatcaggttaacatagctaataat	Protospacer
 * ************ **** *****. *

27. spacer 2.19|1278548|32|NZ_CP046856|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP018064 (Rhodococcus sp. 2G plasmid p1, complete sequence) position: , mismatch: 9, identity: 0.719

tctatcatccagctggtgccgaataccattga	CRISPR spacer
gccagtgcccaactggtgccgaataccagtgt	Protospacer
 *.* ...***.**************** **

28. spacer 2.18|1278488|32|NZ_CP046856|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP021408 (Celeribacter manganoxidans strain DY25 plasmid pDY25-D, complete sequence) position: , mismatch: 10, identity: 0.688

tttgtttcgaaatcgaactcttcggggattaa	CRISPR spacer
accttttcgaaatcggtctcttcggggtcttc	Protospacer
 .. ***********. ********** .*

29. spacer 2.24|1278848|32|NZ_CP046856|CRT,CRISPRCasFinder,PILER-CR matches to NZ_CP032676 (Rhodococcus rhodochrous strain ATCC BAA870 plasmid pNit, complete sequence) position: , mismatch: 11, identity: 0.656

tttagtcagtgtgtcgttcgccatcgtgatgc	CRISPR spacer
accgaatggtgtgtcgttcgccatgctgatgg	Protospacer
 .... ..****************  *****

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site	Prophage annotation

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_CP046855

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

135715 : 142259

Staphylococcus_phage(66.67%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004724909.1\|135715_136186_-	6,7-dimethyl-8-ribityllumazine synthase	A0A2H4PQS3	Staphylococcus_phage	1.9e-31	47.3
WP_020431928.1\|136380_137490_-	bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II	A0A2H4PQS2	Staphylococcus_phage	4.8e-62	39.0
WP_020331651.1\|137531_138185_-	riboflavin synthase	A0A2H4PQS5	Staphylococcus_phage	6.0e-36	40.0
WP_154184073.1\|138188_139298_-	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	A0A2H4PQS8	Staphylococcus_phage	3.8e-43	35.0
WP_020331649.1\|139311_139761_-	transcriptional regulator NrdR	NA	NA	NA	NA
WP_154184072.1\|139863_141114_-	glutamate-5-semialdehyde dehydrogenase	A0A1X9I5D4	Streptococcus_phage	1.2e-96	48.2
WP_038157346.1\|141125_142259_-	glutamate 5-kinase	A0A1X9I5D0	Streptococcus_phage	6.2e-65	42.0

DBSCAN-SWA_2

1349904 : 1358659

Moraxella_phage(33.33%)

integrase,tRNA

attL 1345761:1345774|attR 1359072:1359085

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1345761:1345774	attL	NA	NA	NA	NA
WP_094147173.1\|1349904_1350909_-	hypothetical protein	A0A0R6PIZ6	Moraxella_phage	2.0e-43	33.0
WP_158148049.1\|1351257_1352499_-\|integrase	tyrosine-type recombinase/integrase	A0A1V0E8G8	Vibrio_phage	1.2e-109	47.3
WP_020330404.1\|1352881_1354759_-	RNA polymerase sigma factor RpoD	A0A2I7SAT0	Vibrio_phage	5.5e-34	30.6
WP_020330405.1\|1354856_1356602_-	DNA primase	A0A1S5RG58	Helicobacter_phage	4.5e-46	31.7
WP_020429553.1\|1356720_1357164_-	GatB/YqeY domain-containing protein	A0A292GL36	Xanthomonas_phage	7.4e-22	47.2
WP_001145625.1\|1357192_1357408_-	30S ribosomal protein S21	NA	NA	NA	NA
WP_020330418.1\|1357639_1358659_+\|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	A0A0R6PI74	Moraxella_phage	8.2e-109	57.7
1359072:1359085	attR	NA	NA	NA	NA

DBSCAN-SWA_3

1364791 : 1375897

uncultured_Mediterranean_phage(25.0%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_020330427.1\|1364791_1365559_+	5'/3'-nucleotidase SurE	A0A1B1ITZ2	uncultured_Mediterranean_phage	9.1e-68	52.8
WP_047459356.1\|1365551_1366178_+	protein-L-isoaspartate(D-aspartate) O-methyltransferase	A0A1B1IU40	uncultured_Mediterranean_phage	1.3e-35	52.7
WP_020429687.1\|1366177_1367113_+	murein hydrolase activator NlpD	I3PV79	Clostridium_phage	2.3e-12	32.8
WP_158148055.1\|1367184_1368171_+	RNA polymerase sigma factor RpoS	F4YCU2	Synechococcus_phage	7.6e-35	34.2
WP_154184760.1\|1368239_1370801_-	DNA mismatch repair protein MutS	A0A1V0SC35	Catovirus	3.4e-34	23.4
WP_154184759.1\|1370885_1371374_+	nicotinamide-nucleotide amidase	B5TK85	Pseudomonas_phage	9.3e-26	45.2
WP_024374201.1\|1371546_1372599_+	recombinase RecA	A0A2D1GPX2	Mycobacterium_phage	4.8e-112	60.7
WP_154184758.1\|1372668_1373127_+	recombination regulator RecX	NA	NA	NA	NA
WP_158148056.1\|1373314_1375897_+\|tRNA	alanine--tRNA ligase	A0A1V0SK38	Klosneuvirus	1.5e-77	37.0

DBSCAN-SWA_4

1587207 : 1594255

Faustovirus(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_020330643.1\|1587207_1588422_+	IscS subfamily cysteine desulfurase	A0A0H3TPH2	Faustovirus	1.1e-30	30.5
WP_020330644.1\|1588458_1588842_+	Fe-S cluster assembly scaffold IscU	A0A218MKD1	uncultured_virus	9.1e-53	77.4
WP_020330645.1\|1588901_1589225_+	iron-sulfur cluster assembly protein IscA	A0A2H4N7N5	Lake_Baikal_phage	5.5e-27	54.2
WP_055453038.1\|1589292_1589808_+	co-chaperone HscB	NA	NA	NA	NA
WP_024374135.1\|1589829_1591683_+	Fe-S protein assembly chaperone HscA	A0A0N9QXN8	Chrysochromulina_ericina_virus	6.5e-112	40.8
WP_020330648.1\|1591696_1592035_+	ISC system 2Fe-2S type ferredoxin	NA	NA	NA	NA
WP_020330649.1\|1592090_1592285_+	Fe-S cluster assembly protein IscX	NA	NA	NA	NA
WP_158148081.1\|1592461_1593754_+	aminopeptidase PepB	Q6GYZ8	Mycoplasma_phage	3.4e-35	40.7
WP_020330651.1\|1593823_1594255_+	nucleoside-diphosphate kinase	K7YW26	Megavirus	2.6e-19	39.8

DBSCAN-SWA_5

1827586 : 1889194

Vibrio_phage(80.95%)

tail,terminase,tRNA,portal,integrase,head,capsid

attL 1834404:1834419|attR 1879408:1879423

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_032081500.1\|1827586_1829638_-\|tRNA	methionine--tRNA ligase	A0A1V0SDF2	Indivirus	3.4e-61	29.7
WP_154184633.1\|1829757_1830873_+	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA
WP_020327915.1\|1831048_1831690_+	uridine kinase	A0A1V0SAA3	Catovirus	3.5e-33	38.8
WP_154184632.1\|1831787_1833902_+	AsmA family protein	NA	NA	NA	NA
WP_154184631.1\|1833979_1834585_-	cob(I)yrinic acid a,c-diamide adenosyltransferase	NA	NA	NA	NA
1834404:1834419	attL	NA	NA	NA	NA
WP_020327912.1\|1834741_1836040_-	methyl-accepting chemotaxis protein	NA	NA	NA	NA
WP_024373877.1\|1836585_1837155_+	hypothetical protein	NA	NA	NA	NA
WP_154184878.1\|1837160_1837634_+	low molecular weight phosphotyrosine protein phosphatase	NA	NA	NA	NA
WP_075988749.1\|1837665_1838955_-	outer membrane protein transport protein	NA	NA	NA	NA
WP_024373880.1\|1839256_1840552_-	long-chain fatty acid transporter	NA	NA	NA	NA
WP_154184629.1\|1840784_1841510_-	DUF3379 family protein	NA	NA	NA	NA
WP_020327904.1\|1841502_1842066_-	sigma-70 family RNA polymerase sigma factor	A0A0F6TH34	Sinorhizobium_phage	9.4e-06	28.5
WP_154184628.1\|1842633_1843941_+	acetyl-CoA C-acyltransferase FadI	NA	NA	NA	NA
WP_100267406.1\|1843940_1846067_+	fatty acid oxidation complex subunit alpha FadJ	NA	NA	NA	NA
WP_020327901.1\|1846204_1846753_+	NAD(P)H nitroreductase	NA	NA	NA	NA
WP_024373883.1\|1846813_1847689_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_020327899.1\|1847929_1849033_+	response regulator	Q6XM27	Feldmannia_irregularis_virus	9.8e-07	27.1
WP_020327898.1\|1849221_1849353_+	hypothetical protein	NA	NA	NA	NA
WP_154184627.1\|1849405_1849810_+	DUF454 family protein	NA	NA	NA	NA
WP_020327897.1\|1849940_1850486_+	adenine phosphoribosyltransferase	A0A1V0SKE5	Klosneuvirus	3.4e-29	44.5
WP_154184626.1\|1850507_1852577_+	DNA polymerase III subunit gamma/tau	A0A1L2BWV7	Bacteriophage	2.9e-44	33.6
WP_004726608.1\|1852655_1852985_+	YbaB/EbfC family nucleoid-associated protein	NA	NA	NA	NA
WP_004726607.1\|1853000_1853600_+	recombination protein RecR	NA	NA	NA	NA
WP_055452082.1\|1853653_1854352_-	aquaporin Z	NA	NA	NA	NA
WP_020327893.1\|1854484_1854733_-	YkgJ family cysteine cluster protein	NA	NA	NA	NA
WP_158148133.1\|1854888_1855326_+	YcgN family cysteine cluster protein	NA	NA	NA	NA
WP_158148135.1\|1855431_1856121_-	hypothetical protein	NA	NA	NA	NA
WP_158148137.1\|1856120_1857155_-\|integrase	tyrosine-type recombinase/integrase	A0A2I7RNH5	Vibrio_phage	2.1e-160	79.2
WP_158148139.1\|1857161_1857836_-	G-D-S-L family lipolytic protein	NA	NA	NA	NA
WP_158148141.1\|1857825_1858986_-	acyltransferase family protein	NA	NA	NA	NA
WP_158148429.1\|1858982_1859603_-	chromosome partitioning protein ParA	A0A166YHA0	Vibrio_phage	5.3e-58	54.7
WP_158148143.1\|1859738_1859939_+	hypothetical protein	NA	NA	NA	NA
WP_158148145.1\|1860049_1860589_+	transcriptional regulator	R9TRR3	Vibrio_phage	1.7e-52	58.1
WP_158148147.1\|1860600_1860885_+	hypothetical protein	R9TPY3	Vibrio_phage	2.6e-20	58.5
WP_158148149.1\|1860977_1861577_+	hypothetical protein	R9TNP8	Vibrio_phage	1.8e-31	47.2
WP_158148151.1\|1861573_1862170_+	3'-5' exoribonuclease	K7PM77	Enterobacteria_phage	6.2e-40	50.0
WP_158148153.1\|1862166_1862568_+	hypothetical protein	R9TRR4	Vibrio_phage	4.7e-60	84.7
WP_158148155.1\|1862567_1862804_+	hypothetical protein	R9TPY7	Vibrio_phage	4.6e-31	80.8
WP_158148157.1\|1862865_1865769_+	replication endonuclease	R9TNQ0	Vibrio_phage	5.2e-249	51.6
WP_158148159.1\|1865898_1866507_-	DUF2335 domain-containing protein	S5WJ01	Leptospira_phage	8.6e-05	27.9
WP_158148161.1\|1866507_1866891_-	hypothetical protein	NA	NA	NA	NA
WP_065819907.1\|1868062_1868281_+	hypothetical protein	Q8HA64	Vibrio_phage	3.7e-27	87.5
WP_075989875.1\|1868275_1868527_-	ogr/Delta-like zinc finger family protein	R9TNQ2	Vibrio_phage	2.8e-34	84.3
WP_158148163.1\|1868679_1869465_+	hypothetical protein	NA	NA	NA	NA
WP_158148165.1\|1869469_1870498_-\|portal	phage portal protein	U3PFK6	Vibrio_phage	1.8e-167	83.3
WP_158148167.1\|1870494_1872318_-\|terminase	terminase	U3PIL1	Vibrio_phage	1.7e-298	83.2
WP_158148169.1\|1872488_1873394_+\|capsid	capsid protein	U3PDG3	Vibrio_phage	3.3e-117	89.0
WP_024375111.1\|1873393_1874401_+\|capsid	phage major capsid protein, P2 family	R9TPZ5	Vibrio_phage	3.5e-104	59.6
WP_158148170.1\|1874411_1875131_+\|terminase	terminase	U3PCG2	Vibrio_phage	6.5e-92	70.8
WP_140229597.1\|1875239_1875701_+\|head	head completion/stabilization protein	U3PFL1	Vibrio_phage	3.0e-58	74.5
WP_158148171.1\|1875697_1876189_+	hypothetical protein	R9TRS7	Vibrio_phage	1.6e-73	82.8
WP_158148172.1\|1876175_1876835_+	phage virion morphogenesis protein	R9TPZ7	Vibrio_phage	4.7e-105	90.4
WP_158148173.1\|1876836_1877946_+	DUF2586 family protein	R9TNQ8	Vibrio_phage	1.3e-197	94.3
WP_047461566.1\|1877942_1878398_+	DUF2597 family protein	U3PCG7	Vibrio_phage	3.2e-73	88.7
WP_158148174.1\|1878406_1878613_+	TraR/DksA family transcriptional regulator	R9TMS3	Vibrio_phage	7.1e-28	83.6
WP_047461563.1\|1878613_1878814_+	hypothetical protein	R9TRT0	Vibrio_phage	1.4e-25	83.3
WP_158148175.1\|1878800_1879391_+	glycoside hydrolase family protein	A0A2I7RNI5	Vibrio_phage	8.8e-71	63.8
WP_158148176.1\|1879365_1879707_+	hypothetical protein	R9TNR2	Vibrio_phage	1.6e-48	92.0
1879408:1879423	attR	NA	NA	NA	NA
WP_158148177.1\|1879911_1880196_+	hypothetical protein	A0A160DHS7	Vibrio_phage	1.1e-31	78.3
WP_158148178.1\|1880377_1882195_+\|tail	phage tail tape measure protein	R9TRA2	Vibrio_phage	6.9e-308	91.6
WP_158148179.1\|1882184_1882517_+	DUF2590 family protein	R9TMS7	Vibrio_phage	2.6e-48	89.1
WP_158148180.1\|1882513_1883719_+	hypothetical protein	R9TRT3	Vibrio_phage	1.0e-206	90.3
WP_158148181.1\|1883711_1884371_+\|tail	phage tail protein	R9TQ05	Vibrio_phage	3.2e-114	89.5
WP_158148182.1\|1884367_1885840_+	hypothetical protein	R9TNR5	Vibrio_phage	1.3e-131	83.5
WP_158148183.1\|1885911_1886202_+	hypothetical protein	A0A2D0YU91	Vibrio_phage	6.1e-17	60.3
WP_158148184.1\|1886205_1887099_+	hypothetical protein	R9TRQ4	Vibrio_phage	5.2e-115	72.1
WP_158148185.1\|1887086_1887560_+	DNA-binding protein	R9TPX7	Vibrio_phage	9.8e-65	86.5
WP_158148186.1\|1887556_1889194_+	hypothetical protein	R9TNN7	Vibrio_phage	1.4e-243	75.6

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP046856

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CRISPR-Cas detection and classification

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NZ_CP046855

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CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection