CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP046818	Vibrio metoecus strain 06-2478 chromosome 2, complete sequence	0 crisprs	csa3,cas3HD,cas3	0	0	2	0
NZ_CP046817	Vibrio metoecus strain 06-2478 chromosome 1, complete sequence	0 crisprs	DEDDh,csa3,cas3,DinG,csx1,WYL	0	0	3	0

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

406063 : 464736

Enterobacteria_phage(22.22%)

transposase,plate

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_081018594.1\|406063_407299_+\|transposase	transposase	NA	NA	NA	NA
WP_158160290.1\|407341_408913_-	ATP-binding cassette domain-containing protein	A0A2I4R674	Erysipelothrix_phage	2.2e-20	26.3
WP_055032073.1\|409236_410568_-	ferric reductase	NA	NA	NA	NA
WP_134981108.1\|410772_414510_-	peptidase M66	NA	NA	NA	NA
WP_055032071.1\|414927_417756_-	hypothetical protein	NA	NA	NA	NA
WP_055032069.1\|418138_419350_-	L-2-hydroxyglutarate oxidase	NA	NA	NA	NA
WP_055033752.1\|419346_421488_-	TRAP transporter permease	NA	NA	NA	NA
WP_080482807.1\|421661_422717_-	TAXI family TRAP transporter solute-binding subunit	NA	NA	NA	NA
WP_081020361.1\|422794_422905_-	hypothetical protein	NA	NA	NA	NA
WP_055029363.1\|422970_424323_-	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA
WP_158160291.1\|424486_426541_+	PAS domain S-box protein	A0A1V0SGX0	Hokovirus	2.1e-10	25.5
WP_055032068.1\|426655_427825_-	spindolin	S5MR53	Choristoneura_rosaceana_nucleopolyhedrovirus	4.3e-29	34.0
WP_158160292.1\|428260_428608_+	DUF3316 domain-containing protein	NA	NA	NA	NA
WP_000221450.1\|428789_429749_+\|transposase	IS30 family transposase	Q9MBM9	Staphylococcus_prophage	4.8e-42	36.5
WP_055031227.1\|430158_431517_+	glycerol-3-phosphate transporter	NA	NA	NA	NA
WP_134980968.1\|431667_432735_+	glycerophosphodiester phosphodiesterase	NA	NA	NA	NA
WP_055029357.1\|433019_434168_-	A1 family peptidase	NA	NA	NA	NA
WP_055029356.1\|434264_435197_-	GGDEF domain-containing protein	A0A127AWB9	Bacillus_phage	1.1e-14	31.1
WP_001887742.1\|436345_437266_-	ribokinase	E3SL45	Synechococcus_phage	3.4e-05	38.6
WP_001885121.1\|437403_438288_-	ribose ABC transporter substrate-binding protein RbsB	C6ZCU4	Enterobacteria_phage	9.6e-05	23.0
WP_000749918.1\|440866_441286_-	D-ribose pyranase	NA	NA	NA	NA
WP_055031199.1\|441569_441830_+	DUF3012 domain-containing protein	NA	NA	NA	NA
WP_158160293.1\|441977_442346_-	hypothetical protein	NA	NA	NA	NA
WP_000786510.1\|442338_442920_-	hypothetical protein	NA	NA	NA	NA
WP_158160294.1\|442924_446077_-	type VI secretion system tip protein VgrG	A0A0X8WP64	Ralstonia_phage	7.9e-25	36.8
WP_055031201.1\|446301_447564_-	type VI secretion protein	NA	NA	NA	NA
WP_055031202.1\|447615_451161_-	type VI secretion system membrane subunit TssM	NA	NA	NA	NA
WP_055029347.1\|451176_452580_-	type VI secretion system protein TssA	NA	NA	NA	NA
WP_081020394.1\|452589_453264_-	type VI secretion system-associated protein TagO	NA	NA	NA	NA
WP_055029346.1\|453233_454820_-	AAA domain-containing protein	NA	NA	NA	NA
WP_055031203.1\|454822_457432_-	type VI secretion system ATPase TssH	H6X3M6	Enterobacteria_phage	4.1e-88	29.6
WP_000083403.1\|457457_458231_-	DotU family type IV/VI secretion system protein	NA	NA	NA	NA
WP_055031204.1\|458233_459568_-\|plate	type VI secretion system baseplate subunit TssK	NA	NA	NA	NA
WP_055029344.1\|459574_460051_-	type VI secretion system lipoprotein TssJ	NA	NA	NA	NA
WP_055031205.1\|460053_461541_-	type VI secretion system-associated FHA domain protein TagH	NA	NA	NA	NA
WP_055031206.1\|461543_462560_-\|plate	type VI secretion system baseplate subunit TssG	NA	NA	NA	NA
WP_055033771.1\|462523_464293_-\|plate	type VI secretion system baseplate subunit TssF	NA	NA	NA	NA
WP_000220997.1\|464298_464736_-\|plate	type VI secretion system baseplate subunit TssE	NA	NA	NA	NA

DBSCAN-SWA_2

865005 : 881197

Vibrio_phage(41.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_055031178.1\|865005_865524_+	secretion activator protein	Q6VT55	Vibrio_phage	6.1e-60	63.2
WP_000835320.1\|865967_866189_+	hypothetical protein	NA	NA	NA	NA
WP_055031179.1\|866191_866770_+	hypothetical protein	A0A1V0E8A2	Vibrio_phage	1.0e-23	36.9
WP_001892725.1\|866781_867042_+	hypothetical protein	NA	NA	NA	NA
WP_000207893.1\|868225_869431_+	DUF4043 family protein	A0A088CC32	Shigella_phage	2.7e-135	58.3
WP_055031180.1\|869445_869826_+	hypothetical protein	M4MCI2	Vibrio_phage	6.1e-09	32.0
WP_055031181.1\|869883_870348_+	hypothetical protein	A0A1I9KFH0	Aeromonas_phage	9.4e-28	57.0
WP_054104113.1\|870350_870950_+	hypothetical protein	NA	NA	NA	NA
WP_000117294.1\|870949_871579_+	hypothetical protein	A0A1I9KFD0	Aeromonas_phage	1.5e-23	33.3
WP_055031182.1\|871593_874098_+	right-handed parallel beta-helix repeat-containing protein	A0A240EWW2	Vibrio_phage	3.9e-19	31.2
WP_055031183.1\|874170_875778_+	hypothetical protein	A0A1I9KFD2	Aeromonas_phage	7.8e-130	45.4
WP_055031184.1\|875777_877754_+	DUF1983 domain-containing protein	A0A2L1IV54	Escherichia_phage	7.3e-53	33.0
WP_000989817.1\|877758_878121_+	hypothetical protein	NA	NA	NA	NA
WP_089070564.1\|878161_878503_+	hypothetical protein	NA	NA	NA	NA
WP_055031185.1\|878502_879153_+	hypothetical protein	A0A1I9KFE8	Aeromonas_phage	5.7e-39	44.7
WP_055031186.1\|879156_879534_+	hypothetical protein	A0A1I9KFD7	Aeromonas_phage	5.5e-18	43.8
WP_001896464.1\|879536_879797_+	hypothetical protein	NA	NA	NA	NA
WP_158160326.1\|879796_881197_+	ATPase	M4MHC7	Vibrio_phage	5.4e-42	36.6

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_CP046817

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

951555 : 958560

Anguillid_herpesvirus(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_055031989.1\|951555_951984_-	nucleoside-diphosphate kinase	D2E8E1	Anguillid_herpesvirus	2.3e-20	37.7
WP_055031988.1\|952061_953351_-	aminopeptidase PepB	Q6GYZ8	Mycoplasma_phage	2.9e-34	34.0
WP_055027527.1\|953508_953703_-	Fe-S cluster assembly protein IscX	NA	NA	NA	NA
WP_001124187.1\|953751_954090_-	ISC system 2Fe-2S type ferredoxin	NA	NA	NA	NA
WP_055031987.1\|954103_955954_-	Fe-S protein assembly chaperone HscA	A0A0N9QXN8	Chrysochromulina_ericina_virus	7.0e-106	41.1
WP_055031986.1\|955977_956493_-	co-chaperone HscB	NA	NA	NA	NA
WP_055028798.1\|956541_956865_-	iron-sulfur cluster assembly protein IscA	A0A2H4N7N5	Lake_Baikal_phage	5.2e-25	50.5
WP_000331703.1\|956925_957309_-	Fe-S cluster assembly scaffold IscU	A0A218MKD1	uncultured_virus	5.4e-53	78.2
WP_055031985.1\|957345_958560_-	IscS subfamily cysteine desulfurase	A0A0H3TPH2	Faustovirus	1.5e-32	30.5

DBSCAN-SWA_2

1190055 : 1197311

uncultured_Mediterranean_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_055032036.1\|1190055_1190943_+	cysteine synthase CysM	A0A1X9I5K7	Streptococcus_phage	3.2e-56	41.4
WP_055032040.1\|1191211_1193800_+	DNA mismatch repair protein MutS	A0A1V0SJ67	Klosneuvirus	9.3e-32	26.7
WP_055029829.1\|1193878_1194889_-	RNA polymerase sigma factor RpoS	F4YCU2	Synechococcus_phage	1.0e-34	34.2
WP_055032037.1\|1194962_1195901_-	murein hydrolase activator NlpD	D7RWE0	Brochothrix_phage	4.6e-05	34.7
WP_055032038.1\|1195900_1196527_-	protein-L-isoaspartate(D-aspartate) O-methyltransferase	A0A1B1IU40	uncultured_Mediterranean_phage	1.1e-36	52.7
WP_081018660.1\|1196519_1197311_-	5'/3'-nucleotidase SurE	A0A1B1ITZ2	uncultured_Mediterranean_phage	3.8e-69	53.3

DBSCAN-SWA_3

2288778 : 2295258

Staphylococcus_phage(66.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000210569.1\|2288778_2289912_+	glutamate 5-kinase	A0A1X9I5D0	Streptococcus_phage	1.4e-64	39.3
WP_081020293.1\|2289920_2291174_+	glutamate-5-semialdehyde dehydrogenase	A0A1X9I5D4	Streptococcus_phage	6.2e-98	48.7
WP_055027591.1\|2291274_2291724_+	transcriptional regulator NrdR	NA	NA	NA	NA
WP_055031661.1\|2291736_2292840_+	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	A0A2H4PQS8	Staphylococcus_phage	1.0e-43	33.1
WP_055031660.1\|2292844_2293498_+	riboflavin synthase	A0A2H4PQS5	Staphylococcus_phage	1.8e-32	37.5
WP_001122869.1\|2293537_2294647_+	bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II	A0A2H4PQS2	Staphylococcus_phage	3.3e-63	39.3
WP_000864130.1\|2294787_2295258_+	6,7-dimethyl-8-ribityllumazine synthase	A0A2H4PQS3	Staphylococcus_phage	6.8e-34	48.7

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP046818

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NZ_CP046817

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection