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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP046535 Sphingomonas sp. LMO-1 chromosome, complete genome 5 crisprs csa3,cas2,DEDDh,RT,DinG,cas3,casR 1 1 5 0

Results visualization

1. NZ_CP046535
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP046535_1 732073-732156 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP046535_2 1403270-1403405 Orphan NA
2 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP046535_3 1753219-1753326 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP046535_4 3633005-3633092 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP046535_5 3639562-3639744 Orphan NA
2 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
NZ_CP046535_2 2.1|1403309|19|NZ_CP046535|PILER-CR 1403309-1403327 19 NZ_CP046535.1 2687278-2687296 2 0.895

1. spacer 2.1|1403309|19|NZ_CP046535|PILER-CR matches to position: 2687278-2687296, mismatch: 2, identity: 0.895

tcggcgaaggggttgctcc	CRISPR spacer
tcggcgaagtggttgcgcc	Protospacer
********* ****** **

CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_CP046535_1 1.1|732097|36|NZ_CP046535|CRISPRCasFinder 732097-732132 36 NZ_CP054621 Azospirillum oryzae strain KACC 14407 plasmid unnamed6, complete sequence 296741-296776 8 0.778

1. spacer 1.1|732097|36|NZ_CP046535|CRISPRCasFinder matches to NZ_CP054621 (Azospirillum oryzae strain KACC 14407 plasmid unnamed6, complete sequence) position: , mismatch: 8, identity: 0.778

ggcgcaggagccggcgaccgatgccgccctcgtcgc	CRISPR spacer
ggcgcagcaggcggcgaccgatgccggggtgatcga	Protospacer
******* ** ***************   * .*** 

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 354354 : 418810 54 Shigella_phage(20.0%) terminase,transposase NA
DBSCAN-SWA_2 1331329 : 1422598 60 Klosneuvirus(27.27%) integrase,plate,tRNA,holin attL 1341755:1341774|attR 1380626:1380645
DBSCAN-SWA_3 2114551 : 2153079 41 Enterobacteria_phage(16.67%) capsid,tail,protease,head,tRNA,portal NA
DBSCAN-SWA_4 2873730 : 2881612 12 Synechococcus_virus(16.67%) NA NA
DBSCAN-SWA_5 3911485 : 3959069 37 Bacillus_virus(25.0%) terminase,integrase,transposase attL 3905647:3905666|attR 3974576:3974595
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage