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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP039098 Piscirickettsia salmonis strain Psal-117 plasmid unnamed1, complete sequence 0 crisprs NA 0 0 7 0
NZ_CP039097 Piscirickettsia salmonis strain Psal-117 chromosome, complete genome 2 crisprs DinG,cas3,DEDDh 0 0 36 0
NZ_CP039101 Piscirickettsia salmonis strain Psal-117 plasmid unnamed4, complete sequence 0 crisprs NA 0 0 1 0
NZ_CP039099 Piscirickettsia salmonis strain Psal-117 plasmid unnamed2, complete sequence 0 crisprs NA 0 0 0 0
NZ_CP039100 Piscirickettsia salmonis strain Psal-117 plasmid unnamed3, complete sequence 0 crisprs NA 0 0 1 0

Results visualization

1. NZ_CP039098
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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 0 : 68152 59 Streptococcus_phage(44.0%) transposase,integrase,portal attL 34547:34606|attR 73877:74347
DBSCAN-SWA_2 71667 : 116647 42 Streptococcus_phage(33.33%) transposase,terminase,integrase,portal attL 63824:63883|attR 111018:111613
DBSCAN-SWA_3 120783 : 125554 7 Vibrio_phage(25.0%) NA NA
DBSCAN-SWA_4 132953 : 133682 1 Streptococcus_phage(100.0%) transposase NA
DBSCAN-SWA_5 139339 : 143300 3 Staphylococcus_phage(50.0%) transposase NA
DBSCAN-SWA_6 147268 : 152121 6 Streptococcus_phage(66.67%) transposase NA
DBSCAN-SWA_7 155548 : 166031 13 Streptococcus_phage(33.33%) transposase NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
2. NZ_CP039097
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP039097_1 1537155-1537265 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP039097_2 2096475-2096570 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 31805 : 91594 52 Staphylococcus_phage(28.57%) tRNA,transposase NA
DBSCAN-SWA_2 123076 : 241153 106 Staphylococcus_phage(12.5%) protease,tRNA,transposase NA
DBSCAN-SWA_3 314956 : 357315 54 Chrysochromulina_ericina_virus(20.0%) transposase NA
DBSCAN-SWA_4 366738 : 421651 60 uncultured_Caudovirales_phage(20.0%) protease,tRNA,transposase NA
DBSCAN-SWA_5 451088 : 499227 42 Staphylococcus_phage(100.0%) transposase NA
DBSCAN-SWA_6 504031 : 558714 52 Streptococcus_phage(22.22%) transposase NA
DBSCAN-SWA_7 590505 : 723899 111 Staphylococcus_phage(13.64%) plate,tRNA,transposase NA
DBSCAN-SWA_8 732541 : 778857 51 Staphylococcus_phage(21.43%) plate,transposase NA
DBSCAN-SWA_9 787017 : 841328 49 Prochlorococcus_phage(33.33%) protease,tRNA,transposase NA
DBSCAN-SWA_10 885008 : 947542 53 Staphylococcus_phage(28.57%) tRNA,transposase NA
DBSCAN-SWA_11 951444 : 1018407 56 Bacillus_phage(20.0%) protease,tRNA,transposase NA
DBSCAN-SWA_12 1024020 : 1086547 57 Staphylococcus_phage(33.33%) transposase NA
DBSCAN-SWA_13 1095247 : 1144815 39 Acinetobacter_phage(22.22%) transposase NA
DBSCAN-SWA_14 1169538 : 1225932 52 Staphylococcus_phage(37.5%) tRNA,transposase NA
DBSCAN-SWA_15 1242174 : 1289899 42 Staphylococcus_phage(50.0%) transposase NA
DBSCAN-SWA_16 1313718 : 1354928 37 Enterobacteria_phage(16.67%) transposase NA
DBSCAN-SWA_17 1386145 : 1439879 45 Bacillus_thuringiensis_phage(25.0%) tRNA,transposase NA
DBSCAN-SWA_18 1458814 : 1508233 45 Staphylococcus_phage(23.08%) transposase NA
DBSCAN-SWA_19 1516954 : 1576525 57 Staphylococcus_phage(25.0%) integrase,protease,tRNA,transposase attL 1505805:1505864|attR 1576230:1576840
DBSCAN-SWA_20 1581977 : 1624908 41 Staphylococcus_phage(20.0%) transposase NA
DBSCAN-SWA_21 1683243 : 1773558 82 Burkholderia_phage(14.29%) protease,tRNA,transposase NA
DBSCAN-SWA_22 1784257 : 1834742 46 Vibrio_phage(14.29%) tRNA,transposase NA
DBSCAN-SWA_23 1897041 : 1912357 16 Staphylococcus_phage(50.0%) transposase NA
DBSCAN-SWA_24 1941030 : 1982787 39 uncultured_Mediterranean_phage(40.0%) tRNA,transposase NA
DBSCAN-SWA_25 1987130 : 2043200 49 Klosneuvirus(22.22%) tRNA,transposase NA
DBSCAN-SWA_26 2062900 : 2112435 41 Burkholderia_virus(20.0%) protease,tRNA,transposase NA
DBSCAN-SWA_27 2127004 : 2253842 116 Staphylococcus_phage(14.81%) protease,tRNA,transposase NA
DBSCAN-SWA_28 2266691 : 2327659 47 Staphylococcus_phage(30.0%) integrase,transposase attL 2274544:2274603|attR 2324965:2325725
DBSCAN-SWA_29 2348501 : 2376154 28 Staphylococcus_phage(25.0%) protease,transposase NA
DBSCAN-SWA_30 2415399 : 2542863 106 Burkholderia_virus(25.0%) tRNA,transposase NA
DBSCAN-SWA_31 2552584 : 2603998 55 Bacillus_phage(20.0%) tRNA,transposase NA
DBSCAN-SWA_32 2613291 : 2731752 107 Staphylococcus_phage(29.63%) tRNA,transposase NA
DBSCAN-SWA_33 2769530 : 2822559 45 Staphylococcus_phage(50.0%) transposase NA
DBSCAN-SWA_34 2837125 : 2891386 51 Staphylococcus_phage(37.5%) transposase NA
DBSCAN-SWA_35 2898972 : 2948733 43 Bodo_saltans_virus(14.29%) tRNA,transposase NA
DBSCAN-SWA_36 3076415 : 3141664 55 Hokovirus(14.29%) protease,transposase NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
3. NZ_CP039100
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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 32440 : 45122 17 Moraxella_phage(18.18%) tail,transposase,head,capsid NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
4. NZ_CP039101
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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 3344 : 19366 21 unidentified_phage(35.71%) terminase,capsid,transposase,integrase,head,tail NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage