CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP040434	Stenotrophomonas maltophilia strain PEG-68 chromosome, complete genome	9 crisprs	csa3,cas3,DEDDh,WYL,RT,Cas9_archaeal,PD-DExK,DinG	0	2	3	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP040434_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP040434_1

160192-160305

Orphan

Consensus_repeat	Method
TGGTGGGTGCCGACCGTTGGTCGGCAC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP040434_1

>merge|NZ_CP040434|1|160192-160305|CRISPRCasFinder
TGGTGGGTGCCGACCGTTGGTCGGCACTTCCACTGTCCTTGTTCTGGTAGGTGCCAAGCTTGCTTGGCACGGGGTCTGGGTCTGCTCTGGTGGGTGCCGACCGTTGGTCGGCAC

>NZ_CP040434|1|1|160192-160305|CRISPRCasFinder
TGGTGGGTGCCGACCGTTGGTCGGCAC	TTCCACTGTCCTTGTTCTGGTAGGTGCCAAGCTTGCTTGGCACGGGGTCTGGGTCTGCTC
TGGTGGGTGCCGACCGTTGGTCGGCAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP040434.1\|WP_053495707.1\|151326_153396_+\|tetratricopeptide-repeat-protein	unknown	unknown	gnl\|CDD\|274350
NZ_CP040434.1\|WP_111206067.1\|162822_163569_+\|N-acetylmuramoyl-L-alanine-amidase	unknown	unknown	gnl\|CDD\|225567
NZ_CP040434.1\|WP_032959347.1\|168544_169993_+\|nitrogen-regulation-protein-NR(I)	unknown	unknown	gnl\|CDD\|273818
NZ_CP040434.1\|WP_154344193.1\|165329_167375_+\|TonB-dependent-receptor	unknown	unknown	gnl\|CDD\|238657
NZ_CP040434.1\|WP_014645491.1\|156650_158060_+\|type-I-glutamate--ammonia-ligase	unknown	unknown	gnl\|CDD\|181884
NZ_CP040434.1\|WP_014645490.1\|155633_156428_-\|undecaprenyl-diphosphate-phosphatase	unknown	unknown	gnl\|CDD\|234712
NZ_CP040434.1\|WP_049420290.1\|154732_155560_-\|META-domain-containing-protein	unknown	unknown	gnl\|CDD\|379548
NZ_CP040434.1\|WP_032961630.1\|153406_154018_+\|YbhB/YbcL-family-Raf-kinase-inhibitor-like-protein	unknown	unknown	gnl\|CDD\|176643
NZ_CP040434.1\|WP_032959394.1\|167490_168552_+\|two-component-sensor-histidine-kinase	unknown	unknown	gnl\|CDD\|226370
NZ_CP040434.1\|WP_136191729.1\|160447_160954_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040434.1\|WP_049441701.1\|149436_150228_+\|1-acyl-sn-glycerol-3-phosphate-acyltransferase	unknown	unknown	gnl\|CDD\|153251
NZ_CP040434.1\|WP_005411860.1\|164911_165226_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040434.1\|WP_136191730.1\|161891_162359_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040434.1\|WP_032959349.1\|170086_170656_+\|superoxide-dismutase-family-protein	unknown	unknown	gnl\|CDD\|376292
NZ_CP040434.1\|WP_046427768.1\|154119_154653_-\|NAD(P)H-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|223508
NZ_CP040434.1\|WP_032959393.1\|163636_164803_+\|transglycosylase	unknown	unknown	gnl\|CDD\|225377
NZ_CP040434.1\|WP_004134334.1\|158381_158720_+\|P-II-family-nitrogen-regulator	unknown	unknown	gnl\|CDD\|223424
NZ_CP040434.1\|WP_032961624.1\|150235_151270_+\|alpha/beta-fold-hydrolase	unknown	unknown	gnl\|CDD\|223506
NZ_CP040434.1\|WP_080281862.1\|161460_161895_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040434.1\|WP_014645492.1\|158742_160173_+\|ammonium-transporter	unknown	unknown	gnl\|CDD\|182630

Protein	Function_ID	Function_description	E-value
NZ_CP040434.1\|WP_053495707.1\|151326_153396_+\|tetratricopeptide-repeat-protein	gnl\|CDD\|274350	TIGR02917, TPR_domain_protein, putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.	3.71098e-23
NZ_CP040434.1\|WP_111206067.1\|162822_163569_+\|N-acetylmuramoyl-L-alanine-amidase	gnl\|CDD\|225567	COG3023, ampD, N-acetyl-anhydromuramyl-L-alanine amidase [Cell envelope biogenesis, outer membrane].	3.1823e-51
NZ_CP040434.1\|WP_032959347.1\|168544_169993_+\|nitrogen-regulation-protein-NR(I)	gnl\|CDD\|273818	TIGR01818, Nitrogen_assimilation_regulatory_protein, nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc. [Central intermediary metabolism, Nitrogen metabolism, Regulatory functions, DNA interactions, Signal transduction, Two-component systems].	0
NZ_CP040434.1\|WP_154344193.1\|165329_167375_+\|TonB-dependent-receptor	gnl\|CDD\|238657	cd01347, ligand_gated_channel, TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) anti-parallel beta-barrel. Ligands apparently bind to the large extracellular loops. The N-terminal 150-200 residues form a plug from the periplasmic end of barrel. Energy (proton-motive force) and TonB-dependent conformational alteration of channel (parts of plug, and loops 7 and 8) allow passage of ligand. FepA residues 12-18 form the TonB box, which mediates the interaction with the TonB-containing inner membrane complex. TonB preferentially interacts with ligand-bound receptors. Transport thru the channel may resemble passage thru an air lock. In this model, ligand binding leads to closure of the extracellular end of pore, then a TonB-mediated signal facillitates opening of the interior side of pore, deforming the N-terminal plug and allowing passage of the ligand to the periplasm. Such a mechanism would prevent the free diffusion of small molecules thru the pore.	1.46318e-54
NZ_CP040434.1\|WP_014645491.1\|156650_158060_+\|type-I-glutamate--ammonia-ligase	gnl\|CDD\|181884	PRK09469, glnA, glutamate--ammonia ligase.	0
NZ_CP040434.1\|WP_014645490.1\|155633_156428_-\|undecaprenyl-diphosphate-phosphatase	gnl\|CDD\|234712	PRK00281, PRK00281, undecaprenyl-diphosphate phosphatase.	2.11512e-85
NZ_CP040434.1\|WP_049420290.1\|154732_155560_-\|META-domain-containing-protein	gnl\|CDD\|379548	pfam14302, DUF4377, Domain of unknown function (DUF4377). This domain family is found in bacteria and archaea, and is approximately 80 amino acids in length.	8.74237e-27
NZ_CP040434.1\|WP_032961630.1\|153406_154018_+\|YbhB/YbcL-family-Raf-kinase-inhibitor-like-protein	gnl\|CDD\|176643	cd00865, PEBP_bact_arch, PhosphatidylEthanolamine-Binding Protein (PEBP) domain present in bacteria and archaea. PhosphatidylEthanolamine-Binding Proteins (PEBPs) are represented in all three major phylogenetic divisions (eukaryotes, bacteria, archaea). The members in this subgroup are present in bacterial and archaea. Members here include Escherichia coli YBHB and YBCL which are thought to regulate protein phosphorylation as well as Sulfolobus solfataricus SsCEI which inhibits serine proteases alpha-chymotrypsin and elastase. Although their overall structures are similar, the members of the PEBP family have very different substrates and oligomerization states (monomer/dimer/tetramer). In a few of the bacterial members present here the dimerization interface is proposed to form the ligand binding site, unlike in other PEBP members.	1.34641e-51
NZ_CP040434.1\|WP_049441701.1\|149436_150228_+\|1-acyl-sn-glycerol-3-phosphate-acyltransferase	gnl\|CDD\|153251	cd07989, LPLAT_AGPAT-like, Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: AGPAT-like. Lysophospholipid acyltransferase (LPLAT) superfamily member: acyltransferases of de novo and remodeling pathways of glycerophospholipid biosynthesis which catalyze the incorporation of an acyl group from either acylCoAs or acyl-acyl carrier proteins (acylACPs) into acceptors such as glycerol 3-phosphate, dihydroxyacetone phosphate or lyso-phosphatidic acid. Included in this subgroup are such LPLATs as 1-acyl-sn-glycerol-3-phosphate acyltransferase (AGPAT, PlsC), Tafazzin (product of Barth syndrome gene), and similar proteins.	1.27884e-38
NZ_CP040434.1\|WP_032959393.1\|163636_164803_+\|transglycosylase	gnl\|CDD\|225377	COG2821, MltA, Membrane-bound lytic murein transglycosylase [Cell envelope biogenesis, outer membrane].	1.82078e-114
NZ_CP040434.1\|WP_032959349.1\|170086_170656_+\|superoxide-dismutase-family-protein	gnl\|CDD\|376292	pfam00080, Sod_Cu, Copper/zinc superoxide dismutase (SODC). superoxide dismutases (SODs) catalyze the conversion of superoxide radicals to hydrogen peroxide and molecular oxygen. Three evolutionarily distinct families of SODs are known, of which the copper/zinc-binding family is one. Defects in the human SOD1 gene cause familial amyotrophic lateral sclerosis (Lou Gehrig's disease). Structure is an eight-stranded beta sandwich, similar to the immunoglobulin fold.	1.21322e-41
NZ_CP040434.1\|WP_046427768.1\|154119_154653_-\|NAD(P)H-dependent-oxidoreductase	gnl\|CDD\|223508	COG0431, COG0431, Predicted flavoprotein [General function prediction only].	3.68747e-32
NZ_CP040434.1\|WP_004134334.1\|158381_158720_+\|P-II-family-nitrogen-regulator	gnl\|CDD\|223424	COG0347, GlnK, Nitrogen regulatory protein PII [Amino acid transport and metabolism].	3.60313e-56
NZ_CP040434.1\|WP_032961624.1\|150235_151270_+\|alpha/beta-fold-hydrolase	gnl\|CDD\|223506	COG0429, COG0429, Predicted hydrolase of the alpha/beta-hydrolase fold [General function prediction only].	9.13773e-29
NZ_CP040434.1\|WP_032959394.1\|167490_168552_+\|two-component-sensor-histidine-kinase	gnl\|CDD\|226370	COG3852, NtrB, Signal transduction histidine kinase, nitrogen specific [Signal transduction mechanisms].	1.14856e-110
NZ_CP040434.1\|WP_014645492.1\|158742_160173_+\|ammonium-transporter	gnl\|CDD\|182630	PRK10666, PRK10666, ammonium transporter AmtB.	1.24415e-174

>NZ_CP040434.1|WP_014645492.1|158742_160173_+|ammonium-transporter
MKMRLLTGWQARFHLVCLLMLLSALAAGAWPGSAHAQAQVSPLPSESVAVEPLHDAAATAAAPAVAEAAAAYDRGDVAWMLTSTLLVLLMVVPGLALFYGGLVRSKNVLSVLSQILVVFSLVLLLWVAYGYSAVFSAGNPFFGSFTEFAFLKGFTPESVGNTPIKGLPDYLFVAFQSTFAGITTALIVGAFAERIKFRAVLLFSALWFTLSYIPMAHIVWGGGYLGELGAIDFAGGTVVHINAGVAGLVGAWFVGKRLGYGQTALKPHNVPFTYIGAMLLWVGWFGFNAGSAAAADTVASLAFLNTVLATAAAVLGWTLVEAIGKGKPSALGAASGAVAGLVGITPACGTVGPLGAIVIGFVAGVVCVWGVTGLKRLLKVDDTADVFGVHGVGGIVGAILTGVFSAQSLGGTKADLDIAHQVWVQVVSVGLTVVWSAVMTAVILLVVKVVVGLRVTEEAERTGLDVTSHGESAYEA
>NZ_CP040434.1|WP_004134334.1|158381_158720_+|P-II-family-nitrogen-regulator
MKLISAIIRPFKLDEVREALSDAGVSGITVTEVKGFGRQKGHTELYRGAEYVVDFLPKIKIETVVTDERADAVIEAIQSSAGTGKIGDGKIFVTAVEQVIRIRTGEIGADAL
>NZ_CP040434.1|WP_014645491.1|156650_158060_+|type-I-glutamate--ammonia-ligase
MSVENVEKLIKDNQIEFVDLRFVDMRGVEQHVTFPVSIVEPSLFEEGKMFDGSSIAGWKGINESDMVLLPDTTSAYVDPFYADPTIVISCDILDPATMQPYGRCPRGIAKRAEAYLKSSGIAETAFFGPEPEFFIFDSVRFANEMGNTFFKVDSEEAAWNSGAKYDGANSGYRPGVKGGYFPVPPTDTLHDLRAEMCKTLEQVGIEVEVQHHEVATAGQCEIGTKFSTLVQKADELLRMKYVIKNVAHRNGKTVTFMPKPIVGDNGSGMHVHQSLSKGGTNLFSGDGYGGLSQLALWYIGGIFKHAKAINAFANSGTNSYKRLVPGFEAPVMLAYSARNRSASCRIPWVSNPKARRIEMRFPDPIQSGYLTFTALMMAGLDGIKNQIDPGAPSDKDLYDLPPEEEKLIPQVCSSLDQALEALDKDREFLKAGGVMSDDFIDGYIALKMQEVTKFRAATHPLEYQLYYAS
>NZ_CP040434.1|WP_014645490.1|155633_156428_-|undecaprenyl-diphosphate-phosphatase
MSDLLSALLLGILEGLTEFLPISSTGHLLIAQHWLGARSDFFNIVIQAGAIVAVVLVFRQRLLQLATGFNQRENREYVFKLGAAFLVTAVVGLVVRKAGWSLPETVSPVAWALIIGGVWMLLVEAYTARLPDRDQVTWTVAIGVGLAQVVAGVFPGTSRSASAIFLAMLLGLSRRAAAAEFVFLVGIPTMFAASAYTFLEMAKAGQLGSEDWADVGVAFLAAAITGFVVVKWLMGYIKSHRFTAFAIYRIALGAALLLWLPSGS
>NZ_CP040434.1|WP_049420290.1|154732_155560_-|META-domain-containing-protein
MNRKLTLLLPLALMAACSQTPAPAGTGGDDVAPAAAKAADQQTLAHLDAQRLQSQHWLLQQATGADGKRIDALFAREDKPVTLDFADGRLSVSNTCNRMGGGYTLADGKLTVSAMASTMMACTDKALMALDEAVSSRLQGELKAEQDADGKLTLTNAKGDVLVFNPEPTAETRYGGAGETVFLEVAAKTQKCSHPLIPDYQCLQVREVKFDDKGLKQGEPGKFENFYGTIEGYTHEDGVRNVVRVKRYEVKNPPADAPSQAYVLDMVVESAIEKK
>NZ_CP040434.1|WP_046427768.1|154119_154653_-|NAD(P)H-dependent-oxidoreductase
MKILAISGSARRQSTNTALLVALKTIAPPGMEIEVYAGVGELPVFSPDLEGTDEPCSVTRFKAAIARSDGVLVCSPEYVRGIPGGLKNAIDWLVSGDQIVGRPIALVHASHRGEDMLQALRAVLSTVSAAFSTTLFLRVPVLGLEPEEIFEVLQSEVHRAEADAFLAGFAVYCRSIA
>NZ_CP040434.1|WP_032961630.1|153406_154018_+|YbhB/YbcL-family-Raf-kinase-inhibitor-like-protein
MQLSSHSLTNGAPIDREFAAGDAAGFAPDRNPHLAWSDVPEGTRSFLLVCVDPDVPTVPETVGRTDMSVPRDQPRCDFVHWVMADIPASVREIAAGSCSDGFVVKGKSKPAGPAGSRQGLNDFTGWFAGNPDMAGDYLGYDGPYPPFNDERLHHYFFRVFALDVASLQLPARFTAADAYRAMHGHVLAEAALHGTYTLNPALG
>NZ_CP040434.1|WP_053495707.1|151326_153396_+|tetratricopeptide-repeat-protein
MQDQIIQALRQNEADQAVQLAQAWTRDEPGQAEAHRWLALALQQQGKAEDAMEALQQALQLAPDNAQLHLQHAGLLLALRQFDGAGEALTRTTGLDPNAFAAYLMQAHLAIGRNDFDEAQRLSTLASRVEPDHPELLTIDGMIALRRDDADRALTLLSAANQAQPNDIRVLYALGFAYLGKNMLAFAEQAFRRVLELNPTIASLHGLVVQLAMRQGNLDAAAEAMQIALQQQGLDTPSMRRLAGELALRGGQPLQALEHLLPLLESLPDDRDVLQLLLMSWQRLGREDEARARLDAALEQHPQLHDLWLARLAVEEVGSATAAATVERWMDAMPGHLPALEARLRLHDMVGEHAQAEAIAERIVNLEPGRVSGETRLVEGLLQRDPAAAVARVQALIDMAPEGHRADLRTWLGEIQDRAGQHEDALQTWLALQADQAPQRLPLPPQAKAPPSWPDKGEIDGDATSAPIFLWGAPGSGVERVATGLAAASPVLRSDRYTSNAPDDAFQNYHTLQDLASGVLTPERLVQRWREQLPSRGVQDDAIIDWLLWWDNALLWALRPQLPQGRLLVVLRDPRDMLLDWVAYGAAAPLAMTSLAEASEWLARALAQVAALHEDDLYPQVLLRIDQIGNDPQAMAELLGRLFERPMPPAAQLGAPRFPPGHWRNYRDVMSAAFAKLTPIAVRLGYPEE
>NZ_CP040434.1|WP_032961624.1|150235_151270_+|alpha/beta-fold-hydrolase
MALIPPPVLDAGTPTLHAADYQPPRWLRNPHLQSMLSSSRMRLQRGLLLLAATGAISEELILDGGDGVRLQGWHSHVEGREPKGMALLLHGWEGSAESSYMRMAAARMLEQGFDVVRLNFRDHGNTHHLNPGIFHSNLIDEVVHAAGDIAQRWPQLPLVAAGYSLGGNFVLRLALRAPAAGVPLLRVASVCPVLDPALTMESIENGPAMYDWYFRRKWAGSLRRKRDLFPELSDCDDRVLKLDIRALTAWLVERHTSFGSLQAYFDGYSIAGDRLSSLQVPADILMAQDDPVIPYATFSDWQLPRQAHLETACWGGHCGFLENWRGDGFSERWVAQRLQRVLQG
>NZ_CP040434.1|WP_049441701.1|149436_150228_+|1-acyl-sn-glycerol-3-phosphate-acyltransferase
MTSPTPAPRGGVARVCRYLYRVPLLLVHIVVFLPLILIGMLRPWGELRVGEATLGAKVVNWWQGGLMWIFGFRLVQIGRPLPGAVLFVANHVSWVDICILHSQRMMGFVAKREIASWPLVGWLAARGQTIFHQRGNTESLGGVMQVMADRLREGKAVGVFPEGRTRGGHEVGPFHARIFQAAVETGVPVQPVALVYGLKGDAQTIVAFGPGESFFANFLRLLGEPARRAEVHFLAPIGAQDLEGRRRIAETSRARIVAAMSTQ
>NZ_CP040434.1|WP_136191729.1|160447_160954_+|hypothetical-protein
MEDIEWYVYLLTLDDYSPHALVRSLAGAGDREHWSFAVELTYRCLSSGLWRLSYGLPPELGLSSIDRRSEHQQSDQHHGAWSTCIGSGLCDPTGASGWIRWTLSLNQRLGYGFASNVQLELVGQVWSSNTRDTGGEVGKLRWPWSTFPSRQKCMSYRGSDGKMVEICQ
>NZ_CP040434.1|WP_080281862.1|161460_161895_+|hypothetical-protein
MQRRGEVGGIDEYNRALNAVTTALVGGVAGQGAGQAASNALAPYAAHFIGSTLDPNHGSDPNATLQLLSHAVLGALLAEADGGSAGTGAVSAAGGELAAKVLTNTLTGGDPSKLSPEQKEMVLALSQAVGALAGGLSEQKKVTK
>NZ_CP040434.1|WP_136191730.1|161891_162359_+|hypothetical-protein
MSASDVKDAGRISVQAAYVLMCVFLQKYMERGEGQDTLVDLLSSGGSFLWANGLPNDPAMWDDWCDAFAEVVIVGSALNSEFCSAQINSSGEYLALLDAFSVMMVFLESIFDRSGEDLPLFEVVVRLMSPLGDSGCLDDSSVWAEWVESVRKVRA
>NZ_CP040434.1|WP_111206067.1|162822_163569_+|N-acetylmuramoyl-L-alanine-amidase
MISPRLLASTLLALALSACTATAPVQHNPLATWVLSPNQNARTPVIIVIHHTEQKSVQQSLHTLRTANSGGPVSAHYLIGADGHRYQLVADERRAWHAGAGRWGTITDLNSASIGIELDNDGRSPFSAAQIESLIVLLRDLTTRLNIPPRQVIGHADLAPTRKQDPSRFFPWQQLAEAGFGVWPRAADGAAPEGFDAWNALARFGYPLDNRDATVAAFHRRFRGRDDLPKTLDAEDARILHSLLLQTP
>NZ_CP040434.1|WP_032959393.1|163636_164803_+|transglycosylase
MIDSATFFKRKHWTLLAAAVLAGCATTAPRTGSEAPTPTSPPAATYAKVGWKALPAVSDSDLQAGFVAWRSSCARLKNDAVWAKPCATAAAVSDKNPAAIRQFLQRDLDAYALRAGGHQADGLITGYYEPIYPGSLTRTDKATVPVYGTPDDLVVVQLDSLYPELKGKRLRGRVEGKVLKPYDDAGTIAAKGAKAPVLAWLTDPMDLQLLQIQGSGRVRLADGKQVRLAYAEQNGHPYRAIGRWLVDQGQLKKEDVTMDAIRAWARANPARVPELLRSNPSYVFFVRNPDSPEGPRGSLNVPLTAGYSVAVDRTVVPLGSLLWLSTTRPDGTPVVRPVAAQDTGGAIAGEVRADLYWGSGDAAGKLAGDMKQKGNIWMLWPKGVPLPN
>NZ_CP040434.1|WP_005411860.1|164911_165226_+|hypothetical-protein
MTYAKHNAKPGAKSAAKKYYKHWAESGLGKGNVLMEARGDKIVRQVEIYGTKMVWADEHAHSDDRFLLADQPVSFLDFDEDDEISAREFEAAWKKAREATGYPV
>NZ_CP040434.1|WP_154344193.1|165329_167375_+|TonB-dependent-receptor
MKTPTLVAALAAAPFAPEAFAQAADAALTLGKVQVHQHGEGQLSAHQVLTSVDVLGADQIENRNVSHSWELLGQMPGIQLTETRQGAESGKVSFRAFNGEGYLNAIKTLIDGIPSNVNSGNQRFIDMLFPLDISYIEVVRGTNDPRYGLHNIGGNVNFGTRQGGSYTDARLAYGSYNTRDAQLAIGREANGFAQNYFVGTQASDGYRDHDTSRKYSLGGKWFFGTLDEGLRVGLTARAYHHEADEPGFMTAEELRTHRRGSELRNGNDGDDRDMRQIAAHVDLKLSDALTFGTRLYYNRYEDDRRVTFSDLPTGNLPRQRRVWDERQTGLLSTLTWQASSTLTVEGGLNYEQQDNGYIRERYAYAEPTDYSQPPARVQNDDRHSFDNWGAYVQAIYQPAEAWKIVPAYRIDRFSGRTHLMNGITARLQDYGSIGQPKLSIIHSLGQTTHVYANWGRTFQVLTGSTAPAYLTPGQAPMQPSTNTGMELGLKFQPFQGAQARLAVWQQDAENEVSNMPATGTTVTLGKTRRRGVDAQLSLQLGDDWTVWASHAYQEAKITGDDRDAGISLHGREVAATPRHISNLGVDYRASDALRLGLQARAQGDYYLEERNVAGKFGGFAVLDLSAAYQLTPRFSVDLQLKNVTGRQYAYAWYDSFFWDSARPMFSPAPGRSVFVGLNMKL
>NZ_CP040434.1|WP_032959394.1|167490_168552_+|two-component-sensor-histidine-kinase
MSDPAPPPSLDALGTPLAWAGADGCIAGCNPAFARWLGVSVRRLLGRPLAALEVQGEALAHFLARDERDSLRLNRLALAVPGEAPRFAEGWMSRRDDGGWLLEAHPVDEFPGLDPTQALPSALSAALKGLAHELRNPLAGLKGAAQLLARRAAQRDASERELIELIGSEIERLNGLLDQLLSPAPAAPHAELNIHAALERVLRLAENEAGWAVRLQRDYDPSIPEFHGDADRLTQAVWNLVRNAIQAGAGSITLRTRVEHGVRIAEQLHTLALRLEIADDGRGVPEELAEHLFLPLVSGRAEGTGLGLALAQQVAREHRGTLTYRSRPGHTVFTLLLPIGNGAAPAEEAPRDV
>NZ_CP040434.1|WP_032959347.1|168544_169993_+|nitrogen-regulation-protein-NR(I)
MSESPTTAQRIWVVDDDRAVRFVLCTALREAGYQVVDFDSAAPALQALSAGPPPALLFTDVRMPGDDGLVLLDKLKAALPQLPVVVMSAYTDVASTAGAFRGGAHEFLSKPFDLDDAVALAQRVLPAVAPALAAPSPAAETPGDQPPQLVGDTPPMRALFRAIGRLAQAPLAVLITGETGTGKELVANALHRESPRAQGPFVALNTAAIPAELLESELFGHEAGAFTGAQRRHVGRFEQANGGTLFLDEIGDMPLPLQTRLLRVLAQGEFFRVGGRELIRVDVRVVAATHQDLEGLVAQGKFRADLLHRLDVVRLQLPPLRERREDIAQLASTFLAAAARRLDTPPKRLTAAALQALREHDWPGNVRELENVCWRMAALAAADTIGVADVDTALNRARGRRNSGSAADPGQWEALLAEWARRQLAEGVEGLHAQVRERVDHALLEAALQITHGRRAEAAARLGLGRNTLTRKLGAGRRRGGH
>NZ_CP040434.1|WP_032959349.1|170086_170656_+|superoxide-dismutase-family-protein
MRLSFAILPLSAAVLLSACGSAPKKAEPTPPPPTVVSAAKQGEANLSPASASIVSGRIALMVEPGGIHITGLIGGLQPLQQAGFHIHERGDCSAVDASSAGNHFNPGGAAHGRAGTGKHHLGDMDNLRADAQGRANVDIHLKGVTLGGGAATDIAGRALVVHANADDYRSQPAGNAGVRIACGVIRVVR

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Crispr_ID: NZ_CP040434_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP040434_2

208711-208801

Orphan

Consensus_repeat	Method
GGTGGGTGCCAACCTTGGTTGGCACA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP040434_2

>merge|NZ_CP040434|2|208711-208801|CRISPRCasFinder
GGTGGGTGCCAACCTTGGTTGGCACATCTTTCCAGAAGTTTCTGCAGCCGCCTTGACCTGTCTTTGGTAGGTGCCAACCTTGGTTGGCACA

>NZ_CP040434|2|2|208711-208801|CRISPRCasFinder
GGTGGGTGCCAACCTTGGTTGGCACA	TCTTTCCAGAAGTTTCTGCAGCCGCCTTGACCTGTCTTT
GGTAGGTGCCAACCTTGGTTGGCACA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP040434.1\|WP_005407633.1\|219253_219409_+\|DUF1328-domain-containing-protein	unknown	unknown	gnl\|CDD\|227774
NZ_CP040434.1\|WP_005407628.1\|213408_213726_+\|DUF4156-domain-containing-protein	unknown	unknown	gnl\|CDD\|372679
NZ_CP040434.1\|WP_111206065.1\|197580_199569_-\|peptidoglycan-binding-protein	unknown	unknown	gnl\|CDD\|366659
NZ_CP040434.1\|WP_014645533.1\|196925_197333_-\|glycine-zipper-2TM-domain-containing-protein	unknown	unknown	gnl\|CDD\|182532
NZ_CP040434.1\|WP_032962241.1\|207535_208699_+\|acyl-CoA-dehydrogenase	unknown	unknown	gnl\|CDD\|173840
NZ_CP040434.1\|WP_014645542.1\|209451_209928_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040434.1\|WP_014035559.1\|213829_214846_+\|3-oxoacyl-ACP-synthase-III	unknown	unknown	gnl\|CDD\|181732
NZ_CP040434.1\|WP_049441773.1\|208902_209382_-\|tRNA-(cytidine(34)-2'-O)-methyltransferase	unknown	unknown	gnl\|CDD\|223297
NZ_CP040434.1\|WP_041862952.1\|205601_207278_-\|electron-transfer-flavoprotein-ubiquinone-oxidoreductase	unknown	unknown	gnl\|CDD\|223717
NZ_CP040434.1\|WP_049441774.1\|210344_213194_+\|insulinase-family-protein	unknown	unknown	gnl\|CDD\|223685
NZ_CP040434.1\|WP_072167325.1\|214986_215877_+\|alpha/beta-fold-hydrolase	unknown	unknown	gnl\|CDD\|179147
NZ_CP040434.1\|WP_014645546.1\|218179_219172_+\|NAD-dependent-epimerase/dehydratase-family-protein	unknown	unknown	gnl\|CDD\|187552
NZ_CP040434.1\|WP_014645538.1\|205134_205536_-\|c-type-cytochrome	unknown	unknown	gnl\|CDD\|226005
NZ_CP040434.1\|WP_111206050.1\|193225_195415_-\|TonB-dependent-siderophore-receptor	unknown	unknown	gnl\|CDD\|273805
NZ_CP040434.1\|WP_014035550.1\|200827_201466_-\|response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|225107
NZ_CP040434.1\|WP_049441770.1\|199681_200452_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040434.1\|WP_111206049.1\|201541_205141_+\|transporter-substrate-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|274362
NZ_CP040434.1\|WP_111206826.1\|216524_218183_+\|AMP-binding-protein	unknown	unknown	gnl\|CDD\|236443
NZ_CP040434.1\|WP_029380125.1\|215988_216420_-\|YkgJ-family-cysteine-cluster-protein	unknown	unknown	gnl\|CDD\|223799
NZ_CP040434.1\|WP_049405211.1\|195679_196804_-\|phosphotransferase	unknown	unknown	gnl\|CDD\|270702

Protein	Function_ID	Function_description	E-value
NZ_CP040434.1\|WP_005407633.1\|219253_219409_+\|DUF1328-domain-containing-protein	gnl\|CDD\|227774	COG5487, COG5487, Small integral membrane protein [Function unknown].	0.00162013
NZ_CP040434.1\|WP_005407628.1\|213408_213726_+\|DUF4156-domain-containing-protein	gnl\|CDD\|372679	pfam13698, DUF4156, Domain of unknown function (DUF4156). The function of this family is unknown but members are annotated as putative lipoprotein outer membrane proteins.	1.5656e-09
NZ_CP040434.1\|WP_111206065.1\|197580_199569_-\|peptidoglycan-binding-protein	gnl\|CDD\|366659	pfam01471, PG_binding_1, Putative peptidoglycan binding domain. This domain is composed of three alpha helices. This domain is found at the N or C-terminus of a variety of enzymes involved in bacterial cell wall degradation. This domain may have a general peptidoglycan binding function. This family is found N-terminal to the catalytic domain of matrixins. The domain is found to bind peptidoglycan experimentally.	1.19022e-13
NZ_CP040434.1\|WP_014645533.1\|196925_197333_-\|glycine-zipper-2TM-domain-containing-protein	gnl\|CDD\|182532	PRK10540, PRK10540, osmotically-inducible lipoprotein OsmB.	1.64827e-07
NZ_CP040434.1\|WP_032962241.1\|207535_208699_+\|acyl-CoA-dehydrogenase	gnl\|CDD\|173840	cd01151, GCD, Glutaryl-CoA dehydrogenase. Glutaryl-CoA dehydrogenase (GCD). GCD is an acyl-CoA dehydrogenase, which catalyzes the oxidative decarboxylation of glutaryl-CoA to crotonyl-CoA and carbon dioxide in the catabolism of lysine, hydroxylysine, and tryptophan. It uses electron transfer flavoprotein (ETF) as an electron acceptor. GCD is a homotetramer. GCD deficiency leads to a severe neurological disorder in humans.	0
NZ_CP040434.1\|WP_014035559.1\|213829_214846_+\|3-oxoacyl-ACP-synthase-III	gnl\|CDD\|181732	PRK09258, PRK09258, 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed.	0
NZ_CP040434.1\|WP_049441774.1\|210344_213194_+\|insulinase-family-protein	gnl\|CDD\|223685	COG0612, PqqL, Predicted Zn-dependent peptidases [General function prediction only].	2.15302e-74
NZ_CP040434.1\|WP_041862952.1\|205601_207278_-\|electron-transfer-flavoprotein-ubiquinone-oxidoreductase	gnl\|CDD\|223717	COG0644, FixC, Dehydrogenases (flavoproteins) [Energy production and conversion].	5.21307e-95
NZ_CP040434.1\|WP_049441773.1\|208902_209382_-\|tRNA-(cytidine(34)-2'-O)-methyltransferase	gnl\|CDD\|223297	COG0219, CspR, Predicted rRNA methylase (SpoU class) [Translation, ribosomal structure and biogenesis].	1.23731e-86
NZ_CP040434.1\|WP_072167325.1\|214986_215877_+\|alpha/beta-fold-hydrolase	gnl\|CDD\|179147	PRK00870, PRK00870, haloalkane dehalogenase; Provisional.	9.05404e-44
NZ_CP040434.1\|WP_014645546.1\|218179_219172_+\|NAD-dependent-epimerase/dehydratase-family-protein	gnl\|CDD\|187552	cd05241, 3b-HSD-like_SDR_e, 3beta-hydroxysteroid dehydrogenases (3b-HSD)-like, extended (e) SDRs. Extended SDR family domains belonging to this subgroup have the characteristic active site tetrad and a fairly well-conserved NAD(P)-binding motif. 3b-HSD catalyzes the NAD-dependent conversion of various steroids, such as pregnenolone to progesterone, or androstenediol to testosterone. This subgroup includes an unusual bifunctional 3b-HSD/C-4 decarboxylase from Arabidopsis thaliana, and Saccharomyces cerevisiae ERG26, a 3b-HSD/C-4 decarboxylase, involved in the synthesis of ergosterol, the major sterol of yeast. It also includes human 3 beta-HSD/HSD3B1 and C(27) 3beta-HSD/ [3beta-hydroxy-delta(5)-C(27)-steroid oxidoreductase; HSD3B7]. C(27) 3beta-HSD/HSD3B7 is a membrane-bound enzyme of the endoplasmic reticulum, that catalyzes the isomerization and oxidation of 7alpha-hydroxylated sterol intermediates, an early step in bile acid biosynthesis. Mutations in the human NSDHL (NAD(P)H steroid dehydrogenase-like protein) cause CHILD syndrome (congenital hemidysplasia with ichthyosiform nevus and limb defects), an X-linked dominant, male-lethal trait. Mutations in the human gene encoding C(27) 3beta-HSD underlie a rare autosomal recessive form of neonatal cholestasis. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid sythase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif.	1.37594e-84
NZ_CP040434.1\|WP_111206050.1\|193225_195415_-\|TonB-dependent-siderophore-receptor	gnl\|CDD\|273805	TIGR01783, Ferrienterobactin_receptor, TonB-dependent siderophore receptor. This subfamily model encompasses a wide variety of TonB-dependent outer membrane siderophore receptors. It has no overlap with TonB receptors known to transport other substances, but is likely incomplete due to lack of characterizations. It is likely that genuine siderophore receptors will be identified which score below the noise cutoff to this model at which point the model should be updated. [Transport and binding proteins, Cations and iron carrying compounds, Transport and binding proteins, Porins].	8.22941e-103
NZ_CP040434.1\|WP_014035550.1\|200827_201466_-\|response-regulator-transcription-factor	gnl\|CDD\|225107	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription].	6.0723e-52
NZ_CP040434.1\|WP_014645538.1\|205134_205536_-\|c-type-cytochrome	gnl\|CDD\|226005	COG3474, COG3474, Cytochrome c2 [Energy production and conversion].	5.39439e-34
NZ_CP040434.1\|WP_111206049.1\|201541_205141_+\|transporter-substrate-binding-domain-containing-protein	gnl\|CDD\|274362	TIGR02956, sensor_protein_TorS, TMAO reductase sytem sensor TorS. This protein, TorS, is part of a regulatory system for the torCAD operon that encodes the pterin molybdenum cofactor-containing enzyme trimethylamine-N-oxide (TMAO) reductase (TorA), a cognate chaperone (TorD), and a penta-haem cytochrome (TorC). TorS works together with the inducer-binding protein TorT and the response regulator TorR. TorS contains histidine kinase ATPase (pfam02518), HAMP (pfam00672), phosphoacceptor (pfam00512), and phosphotransfer (pfam01627) domains and a response regulator receiver domain (pfam00072). [Signal transduction, Two-component systems].	3.74205e-88
NZ_CP040434.1\|WP_111206826.1\|216524_218183_+\|AMP-binding-protein	gnl\|CDD\|236443	PRK09274, PRK09274, peptide synthase; Provisional.	0
NZ_CP040434.1\|WP_029380125.1\|215988_216420_-\|YkgJ-family-cysteine-cluster-protein	gnl\|CDD\|223799	COG0727, COG0727, Predicted Fe-S-cluster oxidoreductase [General function prediction only].	2.14508e-15
NZ_CP040434.1\|WP_049405211.1\|195679_196804_-\|phosphotransferase	gnl\|CDD\|270702	cd05153, HomoserineK_II, Type II Homoserine Kinase. This subfamily is composed of unusual homoserine kinases, from a subset of bacteria, which have a Protein Kinase fold. These proteins do not bear any similarity to the GHMP family homoserine kinases present in most bacteria and eukaryotes. Homoserine kinase catalyzes the transfer of the gamma-phosphoryl group from ATP to L-homoserine producing L-homoserine phosphate, an intermediate in the production of the amino acids threonine, methionine, and isoleucine. The Type II homoserine kinase subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K).	1.00336e-24

>NZ_CP040434.1|WP_032962241.1|207535_208699_+|acyl-CoA-dehydrogenase
MALHPYDLFDVRSLLNEEERAVQESVARFTNERVLPIIGDAFDQARFPSELVPEIASLGLLGATLPAEYGGGDLGAVSYGLICQELERGDSGLRSFVSVQSSLCMYPIYAYGSEEQRQQWLPAMARGELIGCFGLTEAHGGSDPASMKTRAVRDGSDWRISGSKMWITSGPVADLAIVWAQTEDGIQGFVLEKGMAGFTTQEIKHKMSLRASLTGALFFDDVRVPDSHRLPNVKGLKGPLGCLTQARYGISWGPIGAAIACLDEALGYAKERVLFGRPLAATQSAQIKLAEMARRITTAQLLALQLGRLKEAGQLQPQQVSLAKWNNCRMAIDIARECRDLLGGAGITTEHVAIRHALNLESVITYEGTETVHQLVIGRELTGINAF
>NZ_CP040434.1|WP_041862952.1|205601_207278_-|electron-transfer-flavoprotein-ubiquinone-oxidoreductase
MSAEANALPPREVMEFDVVIVGAGPAGLATAIRLRQRAIEAGRELSVCVLEKGSEPGAHVLSGAVMDPRALTELFPDWAERGAPLKQKVTRDEFLFLSETGARSTPNALLPECFHNEGNYIISLGEVTRWLAQQAEALEVAIFPGFAAAEVLYGDNGEVIGVATGDMGIEKDGSIGPAFERGMALQAKYTIFAEGARGHLGRQLIARYTLDEGKDPQAYGIGIKELWQIDPSRHEPGLVVHAAGWPLDSDTYGGAFLYHADGGKVAIGYVVGLDYRNPWLSPFEEFQRFKTHPSIRKHLEGGTRIGYGARAITAGGLLSLPKTVFPGGALVGCEAGYLNASRIKGSHAAIKTGMLCADAAFDALAADRQHDELSAYPKAFEASWLFTELQQAKNFKQWFKKGQTVATLMTGVEQWLLPKLGVRNPPWTLHRTQPDHACLEPAAKHTRIAYPKPDGVLTFDRLSSVFLSSTNHDENQPSHLTLKDPSIPVKVNLAEYAGPEARYCPAGVYEFVGEADNARLQINAQNCVHCKTCDIKDPTQNIVWVTPQGGGGPNYSGM
>NZ_CP040434.1|WP_014645538.1|205134_205536_-|c-type-cytochrome
MRACRLLTAVAVALLATACQRPPAVPATPEQARQQAMQRAFELCAGCHTVQPGGIHRFGPNLHGVIGRRAGSLPDYGYSDGMRRADITWTAQTLDTFLQSPTHLVPGTRMYNAFPSAERRALVIAYLQQQSAQ
>NZ_CP040434.1|WP_111206049.1|201541_205141_+|transporter-substrate-binding-domain-containing-protein
MRRWAVRGLLLLLAVLALPVAQAQPAPGLLPLSPLQREYLVAHPTIVVGQYDSGWPPFESLRDGQQVGLGPDYLSHLARQLGMKVEARRYPDWTSVLDAACRGEIDVVMNVGLSADRTRCMVYTAAYSEAPLALVGRPDDLRASDMPDLEGLRVVIEQDFLTGPQVRARFPRARQLVVNDTLSALQMVRDDKADVYIGNAFVATELIASRRLQGVALLRPSDLPPERLHFGIPNSKQPLAEALDLALAATSQAQRDALAQRWLPPPHWSASAQLALSQAEKRVLEQPLKIGFAPNAAPLSFTGEDGRPSGLASEYLQRLMQAGANLQVEDSHDWYEVREKARRGELQAVMGIPVDSRYLGPDWVFSQPFISVPNVIVVRSDGESLLGLADLQGKRVLLSDPERVRGYVLQQAPQARIIAARSAEQSLQRLLAGDADAYIGNLAVVDHLLRSRFPGRLQVAAPAGFNDQLVLAVDRRHAALATTFDRLLLQMTPRKREALRNAWLGVEYRNGVDWNKVLRWGVPVLLVLLTALLVHGVGHWRLRREVAGRRQLEQRLAEVTDNLPAVVYQARRDADGALSFPFIAGDLPALFGITRQQAEQDARVLLERIEEEDRAHILHSIEQAARQFAPLILEFRLRSDGEGVRWVRSQAHPYAAEEGAVIWSGYWVDVSEARMQADALAAAKADAEQAAEAKSRFLATMSHEIRTPMSGVLGMLEVLAHSPLDSEQQRILGVIEDSAQMLRQILDDILDYSRLEAGALRLEPVPQPLRPLLESVCRLLSAQASARGLALHVQIDPELAPAHEVDGVRLRQIVFNLLSNAIKFTAQGEVRLQLEVLGPTSEDGVQPLCLSVTDTGIGIAPEQLQHLFAPFTQAGAYIQRDHGGTGLGLSICQRLVQMMQGELTLHSTLGEGTRAEVRVSLVEAGSEDAAALLAEQDQSALLPAALRQARVLVIEDHPTNQAMMAWRLQQLGVPHVLLGDGQQALDRLSSESFDLVITDCRMPVLDGFGFTRLLREREGRTGQPRLTVLALTASVLDDDARRCREAGMDEVLAKPLSLATLRAALLRWLPQAQGQSFEVPVPEVAADDGEALPDLATLQQRFGSRVVAEQLRDSLLQASEGDLAAAQRAVQAGDRQAAALHLHRQAGGLGAIGATALAQQANALVERLHDAAEADTAPLFATVTTFVARLQKQLQRLAH
>NZ_CP040434.1|WP_014035550.1|200827_201466_-|response-regulator-transcription-factor
MSLRIIIADDHPVVRIGTRAVIESSGVGRVVGEADSAQALMTLLANQPCDLLVTDYSMPGSPQADGFAMIGMIRRRHPDLPVLMLSVSSNLAILRMVLDSGVLGLVDKSSSMDELPQAIQSVYRGQPYISRSLRERVDAAGSWRMREGDGKPLSPREVEVLRLLGTGMTVKEISLQLHKSVSTISRQKGDAMLKLGLKGDAELFDYLRDGKI
>NZ_CP040434.1|WP_049441770.1|199681_200452_-|hypothetical-protein
MQNPSPDAAVTPPDAPSVMYFIYQVDGDGATSYEVQNGSVATFWFGHRFTLDGTTYYTGFSWDTREHYGKPGEQQPAGPDDRANLAEATFVLAGGDAKKPWKFRGQEWTIGALGAYDKADDVDTRRKPIEHRTADGRLLLAVPTSSFDRGISSSGYALLLFNPKRSEDDLDSKVWRYVGSVRTGEDNSAACDDGNVMPCTDSDGELAFVADGNGLPQLTVTFKGTTIEAPGKTRALGAGDTVHYRFDSKAQQYIAP
>NZ_CP040434.1|WP_111206065.1|197580_199569_-|peptidoglycan-binding-protein
MAQHDYSKKEVLDIVEQVARQKGIPVDDFMRFAHIETGGTFNERAHNTSTGAKGLFQFVPGSARQYHLTGHEFDPTRNTEAAAQMYQDNLGSMARRNERTGHPYLSGGDTPTGLDLYLAHQQGSAGYGSVQTAIATGTFGVVRNGHGEEINMRRNVLNQIGSDAKALTGHTLAEMRGMNDGDLARTFSSYYIHKYAAISIPEKHITPQTVAPGQAQAPGTPAQTAAVGAAAATLAATATAPAAPKPGIELHAAYDAGVKYDDVKYAINIPGHALYVPGKTGKNVDQGYIDCSGWVGTLQNRTMDEINQKAGHAVFSKADRIDLGNLGSGGIVHKAVEQSGVLLERDAILKPGALKEGMVIGLDTARTRHEHWNGIDHIVMVVRDPNTDKLLISQSTGSKGVHTMPVEDYLKQVKDHPHWKLFASDPLSKARDLLESRTQSHEQTQGKPAAEHKAAAAPHAELYKPGAHSEGVRKVQEQLGHLGYAGADGKPLAEDGRFGRNTEAAVRQLQKDNGLIADGIVGAKTLDAIKEARERPLLNDERHPRNPMYLQATEGLERMPAGTFKDRHALESAAAALTREAHAAGLQRIDAVVPSPNGERLFAVQGTVGDPAASRVAVETRTASEQSMALSSGAVQGAPNVLHQQQDAQQEQTRQAQKAMGV
>NZ_CP040434.1|WP_014645533.1|196925_197333_-|glycine-zipper-2TM-domain-containing-protein
MLSTSTLSFRGLAMALALVAGVAVVSDASAMSRKDKRTLVGAVVGGVAGNLLSNGDPAATVGGAVAGGAIGNLTTSDRRDRRYYDNRRYDDRYDRRYDRGYYRSGYYDRGDDRRWQRERYYDNRYYHDRGRHRGW
>NZ_CP040434.1|WP_049405211.1|195679_196804_-|phosphotransferase
MTSSSHRVQGLNNDEVAADWPPISAADIAWLSTRYPQLGGHSQPRWHSPRPLSAAAIVDDTRGAVFIKRHHHSVRSAACLEEEHHFIAHLAAAGVPVVQVLPATDGHTAVEHGEWTFELHDVGVGDDLYRDAVSWSLLTDVAQAREAGRTLAQLHRAAASYHAPQRSTHLLVARDDLIRADDPIAAIKAGLDERPGLARYLARIPWEAQLQRDVLPWHAGLAERLRAEPRLWAHNDWHVSNLLWRNGEVSTVLDFGLASPTSALFDLATAIERNAVAWLELERGMEAVRIDIALALLDGYREVLPLSAARVHLLADLLPMVHFDFALSEVEYFEGVTRSTANADVAWQPFMLGHPAWFHSAPGRALLQALHAVA
>NZ_CP040434.1|WP_111206050.1|193225_195415_-|TonB-dependent-siderophore-receptor
MNRCLRPTLLSLALCAALPLHASEAEATTDAAATGAERSPTELAAVRVEAGKPKADTSRVNAFGGGSWKDTPASVNVLERDYLERRQVRSLSELASNDASLGDAYAPVGYYQNIAIRGFALDAATGYRFNGLSIAGEQRLALENVQSVEILKGEAGLAAGVMAPGGIINYIGKRPAEVRTATLGTDSEGSRYVAVDVGHWITPRFGLRLNAAWDSSNSYVAHADGRRNFYSLAADWLIGERGKLEVDANYQTSSQRSVSGYQLLGARDLPRGVDREHLLGYQPWQRPVDIASTNITALHTYDFNDAWQSRVSVGHSRSVIDDNVAFAYGCYYAVQCADGSVPGNYFAPNGDYDVYDYRSPDDTRRNQQARAELRGRFETGSVGHQLTLGADYFRRTVDKRPSVNEYVGTSNIHDPQVPVFAPSPKMPGPSARRLDSRQTAFFALDRMSFGDDWQWLAGGRFVRLDERAYDKRGVPQRHSRLSRFLPQTAVVWKATDQLNAYASYVRGISLGQEAPFWTSNADTFLPSVQSRQLEVGVKYVPVEALTLGAAVFRISQPYQYARPDSSDVGYTFVEEGTQTHTGLELTANGQLTDALQIVASASMLQARARDTGTPAYEGHQLVNVPKVRASVHVAYALPFVQGLDVTGGWRYAGANVARADGGVRAPDYSVFDAGLRFQHRLHERAVTWNLSVDNVFNRFYWRDTGSSGGDYYLFPGAPRQARLSVTFAL
>NZ_CP040434.1|WP_049441773.1|208902_209382_-|tRNA-(cytidine(34)-2'-O)-methyltransferase
MNAAPPFHVILFQPEIPPNTGNVIRLCANTGAQLHLVEPLGFALEDKQLKRAGLDYHEYSRLQVHPDLDTALARIAPKRLFALSTRASVRYDSVAFEDGDAFLFGPESRGLPQDVLDALPDGRRLRLPMRPGNRSLNLSNTVAVVMYEAWRQHGFAGGA
>NZ_CP040434.1|WP_014645542.1|209451_209928_-|hypothetical-protein
MNAKTIAIAIALIAGTAVVSSVQASESIKTLATVQVRPAADQLAQQAWEQASGIPTLATVEVRPSADQLAERNGYVAAPVAAAMPITTLASVEVRPSLEQRVALAAELEAQRYAATLAAAATSVANQVIVNLPALQVRPSAADLQALATETAQVLLRP
>NZ_CP040434.1|WP_049441774.1|210344_213194_+|insulinase-family-protein
MSLALRPRAALLAVALSTALGTLAPTSALAARPTAPAKVDIPYEQFTLPNGLRVIVHTDRKAPIVAVNVWYHVGSKDEPAGRTGFAHLFEHLMFQGSENHDGEFFEPFKQVGATNQNGTTNTDRTNYFENVPTTALDMALWMESDRMGHLVGAIDQAALDEQRGVVQNEKRQGENQPYGQAWDQINKALYPVGHPYHHGVIGSMNDLNAASLDDVKTWFRTWYGPNNAVLVLAGDIDLATAKEKVARYFGSIPAGPTMAQPAVNVAKRSADTRETMTDKVPQARIYRAWNVPQVGTADIDQLQLFSEVLGGAKSSRLSQRLQHQDKLVDSIGSGLSTSQLGSNFVIVATVKQGQDPAKVEKIIDEELDRLIKQGPTAAELERAKTGARAGFIRGIERIGGFGGKADALAECAVFTGDPGCFRTSLANIEKASAADLSRLGAEWLDKGSHTLVIAPGERVALKEEPSQTPKPFTVPAVDPKYSTLPEQVDRKAGVPQTREFPQLKFPALQRATLKNGTQVILAERHEIPVVQFSYQFPGGFSADQGRKPGTANFTMSLMTEGAGKLGSLAFADAADALGASLDASAGLDSMSVDLSALKENLAPSLALYRDLLREPRFEQGEIDRVKATWIAGIQQEKVNPGAVAMRVLPPLLYGKGHPYAIPFTGSGDEAAINGLTREDLVDFHHDWLRPQNGTLIVVGDTTLAEIVPLLDKQLGDWKATGEAPQVKAATDVALPKGPRVFLIDQPGAVQANLFAGQVVAPSSAASSTRFDIANGVIGGDFTSRLNMNLREDKHWSYGARSSATSSVGQRPWMASAPVQIDKTGPALAEMRKEIAAFADGSKPATAAEVNRIRNIQTLSLPGAYETASAVAATIGSIVQFKRPDDYVLRRKAEIEAMTPAQVQQAAAEIKPQALTWVVVGDLKQTEAAVRALNLGEVTVIDAEGNPVKK
>NZ_CP040434.1|WP_005407628.1|213408_213726_+|DUF4156-domain-containing-protein
MRVLLLSSLLLTVTACTWVPIEPAGKATRVLPAGPVPAGCIAKGEVVVTVKSKVGFYNRNPLRVQEELETLARNEAPSAGANAVQAAAAPADGSQRFAAFQCPPR
>NZ_CP040434.1|WP_014035559.1|213829_214846_+|3-oxoacyl-ACP-synthase-III
MLFKNVSIAGLAHVDAPHTLTTKEINERLQPTLDRLGIRTDVLGDIAGIHARRLWDNGVLASDAATMAGRKALEDAGIDATQVGLLVNTSVSRDYLEPSTASIVSGNLGVSDECMTFDVANACLAFINGMDIAARMIERGDIDYALVVDGETANLVYEKTLERMTAPDVTADDFRNELAALTTGSGAAAMVMARSELVPDAPRYKGGVTRSATEWNQLCLGNLDRMVTDTRLLLIEGIKLAQKTFTAAKIALGWAVEELDQFVIHQVSQPHTAAFIKNFGIDPKKVMTIFGEHGNIGPASVPIVLSKLKQLGKLKKGDRIALLGIGSGLNCSMAEVVW
>NZ_CP040434.1|WP_072167325.1|214986_215877_+|alpha/beta-fold-hydrolase
MRDLPGYPAHPQRFEVRPGLSMNYLDEGPRDGEVVVMVHGNPSWSYYWRTLVAGLSDTYRCIVPDHIGMGLSDKPDDSRYEYTLQSRVDDLDALLKHLGITGPVTLAVHDWGGMIGFGWALSHHDQVKRLVVLNTAAFPMPAAKKMPWQIALGRHWKIGEWIIRSFNAFSSGASWLGVERKMPADVRRAYVSPYNSWANRISTIRFMQDIPLSPADKAWSLLERAGKALPSFADRPAFLGWGLRDFVFDHHFLKGFQAALPQAQVHAFEDAGHYVLEDKHEVLVPEIRAFLDANPI
>NZ_CP040434.1|WP_029380125.1|215988_216420_-|YkgJ-family-cysteine-cluster-protein
MQHPCMTCGACCTQYRVAFHWMESDEVTPGGVPHQLTEVLDPHRLCMRGTHSKPVRCVALDAQIGVYSRCTIHPNRPSVCREVDASWEYGKASPQCDKARIAYGLDPLTLADWRWRDDADNDDDHPDDNGNSPSSPPQAPVAA
>NZ_CP040434.1|WP_111206826.1|216524_218183_+|AMP-binding-protein
MNRPCNIAARLPELARERPDQIAIRCPGRRGAGNGMAAYDVTLDYRQLDARSDAMAAGLAGYGIGRGVRTVVMVRPSPEFFLLMFALFKLGAVPVLVDPGIDKRALKQCLDEAQPQAFIGIPLAHVARLALRWAPSATRLVTVGRRLGWGGTSLAALERAGAKGGAMLADTDGEDMAAILFTSGSTGVPKGVVYRHRHFLGQIQLLGSAFGMEAGGVDLPTFPPFALFDPALGLTSVIPDMDPTRPAQADPARLHDAIQRFGVTQLFGSPALMRVLARHGRPLPTVTRVTSAGAPVPPDVVATIRSLLPADAQFWTPYGATECLPVAVVEGRELERTRAATEAGAGTCVGSVVAPNEVRIIAIDDAPLADWSQARVLAVGEVGEITVAGPTATDSYFNRPQATAAAKIRETLADGSTRIVHRMGDVGYFDVQGRLWFCGRKTHRVETAQGPLYTEQVEPVFNTVPGVARTALVGVGPAGAQVPVLCVELQRGQSDSPALQEALRAHAAARTPEAGLQHFLMHPAFPVDIRHNAKIGREKLAVWASAELEKRA
>NZ_CP040434.1|WP_014645546.1|218179_219172_+|NAD-dependent-epimerase/dehydratase-family-protein
MKILVTGGGGFLGQALCRGLVERGHQVLAFNRSHYPELQAMGVGQIRGDLADAQAVLHAVAGVDAVFHNGAKAGAWGSYDSYHQANVVGTDNVIAACRAHGINRLVYTSTPSVTHRATHPVEGLGADEVPYGEDFQAPYAATKAIAEQRVLAANDVSLATVALRPRLIWGPGDQQLVPRLAERARQGRLRLVGDGNNKVDTTYIDNAALAHFLAFEALAPGAACAGKAYFISNGEPLPMRELVNRLLAAVGAPTVDKAISFKTAYRIGAVCERLWPLLRLRGEPPLTRFLAEQLCTPHWYSMEPARRDFGYVPQVSIEEGLRRLKASSAA
>NZ_CP040434.1|WP_005407633.1|219253_219409_+|DUF1328-domain-containing-protein
MLHYAIIFFVIAIIAAVLGFSGIAGAATNIAWILFVVFLILAVISMFRKRG

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Crispr_ID: NZ_CP040434_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP040434_3

402607-402901

Orphan

Consensus_repeat	Method
CCGCCGTTGACGGTNTCGA	CRT

5 spacers

The CRISPR arrays of NZ_CP040434_3

>merge|NZ_CP040434|3|402607-402901|CRT
TCACCGTTGACGGTCTCGACGTCTTTGCCGACGCGGCTCTCGACCAGGCCGATGCCGCCGTTCACGGTCTCGACGCCGCCTTCGATCTGGCTGCCGCGATCAGTGAAGATGCTGCCGTTGACGGTGCTGACGCCGCCGCTGGCGATCACTTCGCGACCCAGGCGGACACCGCCGTTGACGGTTTCGATCTTGCCGGTGCGTGCGCGGTCGGCAACCTTCACCCCGCCGTTGACGGTGTCGATGCTTCCGGTCTCGACGCCTTCGCCGACACGGATGCCGCCGTTGACGGTGTCCA

>NZ_CP040434|3|1|402607-402901|CRT
TCACCGTTGACGGTCTCGA	CGTCTTTGCCGACGCGGCTCTCGACCAGGCCGATG
CCGCCGTTCACGGTCTCGA	CGCCGCCTTCGATCTGGCTGCCGCGATCAGTGAAGATG
CTGCCGTTGACGGTGCTGA	CGCCGCCGCTGGCGATCACTTCGCGACCCAGGCGGACA
CCGCCGTTGACGGTTTCGA	TCTTGCCGGTGCGTGCGCGGTCGGCAACCTTCACC
CCGCCGTTGACGGTGTCGA	TGCTTCCGGTCTCGACGCCTTCGCCGACACGGATG
CCGCCGTTGACGGTGTCCA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP040434.1\|WP_111206331.1\|408536_409136_+\|nicotinamide-mononucleotide-transporter	unknown	unknown	gnl\|CDD\|377432
NZ_CP040434.1\|WP_049441862.1\|387445_388657_+\|tyrosine--tRNA-ligase	unknown	unknown	gnl\|CDD\|235645
NZ_CP040434.1\|WP_005407770.1\|380278_380371_-\|potassium-transporting-ATPase-subunit-F	unknown	unknown	unknown
NZ_CP040434.1\|WP_049441383.1\|400569_402279_-\|M28-family-peptidase	unknown	unknown	gnl\|CDD\|349910
NZ_CP040434.1\|WP_046428202.1\|414328_415282_+\|cytochrome-c-oxidase-subunit-II	unknown	unknown	gnl\|CDD\|224537
NZ_CP040434.1\|WP_004153896.1\|415341_416949_+\|cytochrome-c-oxidase-subunit-I	unknown	unknown	gnl\|CDD\|238833
NZ_CP040434.1\|WP_080355816.1\|384611_385739_-\|anhydro-N-acetylmuramic-acid-kinase	unknown	unknown	gnl\|CDD\|236579
NZ_CP040434.1\|WP_111206333.1\|409122_410196_+\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|273670
NZ_CP040434.1\|WP_014645677.1\|382891_384196_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|341039
NZ_CP040434.1\|WP_154344194.1\|404533_405994_+\|PDZ-domain-containing-protein	unknown	unknown	gnl\|CDD\|223864
NZ_CP040434.1\|WP_005414994.1\|406077_406770_-\|rhomboid-family-intramembrane-serine-protease	unknown	unknown	gnl\|CDD\|223777
NZ_CP040434.1\|WP_014645674.1\|380591_381254_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040434.1\|WP_041862998.1\|382094_382895_+\|exodeoxyribonuclease-III	unknown	unknown	gnl\|CDD\|197336
NZ_CP040434.1\|WP_014645678.1\|384274_384505_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040434.1\|WP_014645680.1\|385805_387278_-\|peptidoglycan-DD-metalloendopeptidase-family-protein	unknown	unknown	gnl\|CDD\|236946
NZ_CP040434.1\|WP_014645683.1\|403123_404425_+\|peptidoglycan-DD-metalloendopeptidase-family-protein	unknown	unknown	gnl\|CDD\|227278
NZ_CP040434.1\|WP_032961411.1\|381272_381932_-\|orotate-phosphoribosyltransferase	unknown	unknown	gnl\|CDD\|234771
NZ_CP040434.1\|WP_049419231.1\|406995_408423_+\|membrane-protein	unknown	unknown	gnl\|CDD\|367457
NZ_CP040434.1\|WP_004153894.1\|413840_414317_+\|DUF2244-domain-containing-protein	unknown	unknown	gnl\|CDD\|378350
NZ_CP040434.1\|WP_014645688.1\|410347_413566_-\|bifunctional-proline-dehydrogenase/L-glutamate-gamma-semialdehyde-dehydrogenase-PutA	unknown	unknown	gnl\|CDD\|237017

Protein	Function_ID	Function_description	E-value
NZ_CP040434.1\|WP_111206331.1\|408536_409136_+\|nicotinamide-mononucleotide-transporter	gnl\|CDD\|377432	pfam04973, NMN_transporter, Nicotinamide mononucleotide transporter. Members of this family are integral membrane proteins that are involved in transport of nicotinamide mononucleotide.	1.54456e-48
NZ_CP040434.1\|WP_049441862.1\|387445_388657_+\|tyrosine--tRNA-ligase	gnl\|CDD\|235645	PRK05912, PRK05912, tyrosyl-tRNA synthetase; Validated.	0
NZ_CP040434.1\|WP_004153894.1\|413840_414317_+\|DUF2244-domain-containing-protein	gnl\|CDD\|378350	pfam10003, DUF2244, Integral membrane protein (DUF2244). This domain, found in various bacterial hypothetical and putative membrane proteins, has no known function.	1.9517e-28
NZ_CP040434.1\|WP_049441383.1\|400569_402279_-\|M28-family-peptidase	gnl\|CDD\|349910	cd05660, M28_like_PA, M28 Zn-peptidase containing a protease-associated (PA) domain insert. Peptidase family M28 (also called aminopeptidase Y family), uncharacterized subfamily. The M28 family contains aminopeptidases as well as carboxypeptidases. They have co-catalytic zinc ions; each zinc ion is tetrahedrally co-ordinated, with three amino acid ligands plus activated water; one aspartate residue binds both metal ions. This subfamily is composed of uncharacterized proteins containing a protease-associated (PA) domain insert which may participate in substrate binding and/or promote conformational changes, influencing the stability and accessibility of the site to substrate.	9.414e-112
NZ_CP040434.1\|WP_046428202.1\|414328_415282_+\|cytochrome-c-oxidase-subunit-II	gnl\|CDD\|224537	COG1622, CyoA, Heme/copper-type cytochrome/quinol oxidases, subunit 2 [Energy production and conversion].	1.05604e-73
NZ_CP040434.1\|WP_004153896.1\|415341_416949_+\|cytochrome-c-oxidase-subunit-I	gnl\|CDD\|238833	cd01663, Cyt_c_Oxidase_I, Cytochrome C oxidase subunit I. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Only subunits I and II are essential for function, but subunit III, which is also conserved, may play a role in assembly or oxygen delivery to the active site. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Subunit I contains a heme-copper binuclear center (the active site where O2 is reduced to water) formed by a high-spin heme (heme a3) and a copper ion (CuB). It also contains a low-spin heme (heme a), believed to participate in the transfer of electrons to the binuclear center. For every reduction of an O2 molecule, eight protons are taken from the inside aqueous compartment and four electrons are taken from cytochrome c on the opposite side of the membrane. The four electrons and four of the protons are used in the reduction of O2; the four remaining protons are pumped across the membrane. This charge separation of four charges contributes to the electrochemical gradient used for ATP synthesis. Two proton channels, the D-pathway and K-pathway, leading to the binuclear center have been identified in subunit I. A well-defined pathway for the transfer of pumped protons beyond the binuclear center has not been identified. Electrons are transferred from cytochrome c (the electron donor) to heme a via the CuA binuclear site in subunit II, and directly from heme a to the binuclear center.	0
NZ_CP040434.1\|WP_080355816.1\|384611_385739_-\|anhydro-N-acetylmuramic-acid-kinase	gnl\|CDD\|236579	PRK09585, anmK, anhydro-N-acetylmuramic acid kinase; Reviewed.	0
NZ_CP040434.1\|WP_111206333.1\|409122_410196_+\|AAA-family-ATPase	gnl\|CDD\|273670	TIGR01526, nadR_NMN_Atrans, nicotinamide-nucleotide adenylyltransferase, NadR type. The NadR protein of E. coli and closely related bacteria is both enzyme and regulatory protein. The first 60 or so amino acids, N-terminal to the region covered by this model, is a DNA-binding helix-turn-helix domain (pfam01381) responsible for repressing the nadAB genes of NAD de novo biosynthesis. The NadR homologs in Mycobacterium tuberculosis, Haemophilus influenzae, and others appear to lack the repressor domain. NadR has recently been shown to act as an enzyme of the salvage pathway of NAD biosynthesis, nicotinamide-nucleotide adenylyltransferase; members of this family are presumed to share this activity. E. coli NadR has also been found to regulate the import of its substrate, nicotinamide ribonucleotide, but it is not known if the other members of this model share that activity.	2.29523e-41
NZ_CP040434.1\|WP_014645677.1\|382891_384196_+\|MFS-transporter	gnl\|CDD\|341039	cd17486, MFS_AmpG_like, AmpG and similar transporters of the Major Facilitator Superfamily. AmpG acts as an inner membrane permease in the beta-lactamase induction system and in peptidoglycan recycling. It transports meuropeptide from the periplasm into the cytosol in gram-negative bacteria, which is essential for the induction of the ampC encoding beta-lactamase. The AmpG family belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	1.38067e-107
NZ_CP040434.1\|WP_154344194.1\|404533_405994_+\|PDZ-domain-containing-protein	gnl\|CDD\|223864	COG0793, Prc, Periplasmic protease [Cell envelope biogenesis, outer membrane].	9.15017e-131
NZ_CP040434.1\|WP_014645683.1\|403123_404425_+\|peptidoglycan-DD-metalloendopeptidase-family-protein	gnl\|CDD\|227278	COG4942, COG4942, Membrane-bound metallopeptidase [Cell division and chromosome partitioning].	1.04693e-88
NZ_CP040434.1\|WP_041862998.1\|382094_382895_+\|exodeoxyribonuclease-III	gnl\|CDD\|197336	cd10281, Nape_like_AP-endo, Neisseria meningitides Nape-like subfamily of the ExoIII family purinic/apyrimidinic (AP) endonucleases. This subfamily includes Neisseria meningitides Nape and related proteins. These are Escherichia coli exonuclease III (ExoIII)-like AP endonucleases and belong to the large EEP (exonuclease/endonuclease/phosphatase) superfamily that contains functionally diverse enzymes that share a common catalytic mechanism of cleaving phosphodiester bonds. AP endonucleases participate in the DNA base excision repair (BER) pathway. AP sites are one of the most common lesions in cellular DNA. During BER the damaged DNA is first recognized by DNA glycosylase. AP endonucleases then catalyze the hydrolytic cleavage of the phosphodiester bond 5' to the AP site, and this is followed by the coordinated actions of DNA polymerase, deoxyribose phosphatase, and DNA ligase. If left unrepaired, AP sites block DNA replication, and have both mutagenic and cytotoxic effects. AP endonucleases can carry out a variety of excision and incision reactions on DNA, including 3'-5' exonuclease, 3'-deoxyribose phosphodiesterase, 3'-phosphatase, and occasionally, nonspecific DNase activities. Different AP endonuclease enzymes catalyze the different reactions with different efficiences. Many organisms have two AP endonucleases, usually one is the dominant AP endonuclease, the other has weak AP endonuclease activity; for example, Neisseria meningitides Nape and NExo. Nape, found in this subfamily, is the dominant AP endonuclease. It exhibits strong AP endonuclease activity, and also exhibits 3'-5'exonuclease and 3'-deoxyribose phosphodiesterase activities.	3.38562e-145
NZ_CP040434.1\|WP_014645680.1\|385805_387278_-\|peptidoglycan-DD-metalloendopeptidase-family-protein	gnl\|CDD\|236946	PRK11649, PRK11649, putative peptidase; Provisional.	2.71206e-54
NZ_CP040434.1\|WP_005414994.1\|406077_406770_-\|rhomboid-family-intramembrane-serine-protease	gnl\|CDD\|223777	COG0705, COG0705, Membrane associated serine protease [Amino acid transport and metabolism].	6.16019e-27
NZ_CP040434.1\|WP_032961411.1\|381272_381932_-\|orotate-phosphoribosyltransferase	gnl\|CDD\|234771	PRK00455, pyrE, orotate phosphoribosyltransferase; Validated.	1.25111e-82
NZ_CP040434.1\|WP_049419231.1\|406995_408423_+\|membrane-protein	gnl\|CDD\|367457	pfam03349, Toluene_X, Outer membrane protein transport protein (OMPP1/FadL/TodX). This family includes TodX from Pseudomonas putida F1 and TbuX from Ralstonia pickettii PKO1. These are membrane proteins of uncertain function that are involved in toluene catabolism. Related proteins involved in the degradation of similar aromatic hydrocarbons are also in this family, such as CymD. This family also includes FadL involved in translocation of long-chain fatty acids across the outer membrane. It is also a receptor for the bacteriophage T2.	2.17613e-118
NZ_CP040434.1\|WP_014645688.1\|410347_413566_-\|bifunctional-proline-dehydrogenase/L-glutamate-gamma-semialdehyde-dehydrogenase-PutA	gnl\|CDD\|237017	PRK11904, PRK11904, bifunctional proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase PutA.	0

>NZ_CP040434.1|WP_049441383.1|400569_402279_-|M28-family-peptidase
MPRKLLLCLAAAAALSACKGESTPAATPSTDTAAAKPAAHQFSPEINAGDFAEMVKTLASDEFEGRAPGSKGEELTVNYIRDQMQRIGLQPGNGDSWFQDVPMTETTADESTVLKITQGGKTTELKFGTDMVVGTRTGQAEVKVDASDLVFVGYGVDAPEQKWNDYAGQDWKGKTVVMFVNDPGFHVDDAKLFDGKRMTYYGRWTYKFEEAARKGAAAALIVHDTAGASYGWDVVKNSWAGPQYDLPAKDDPEARIPVQGWLSADAAKALFAGAGLDLAQAYKDASKRGFKPVPLKATAAVDLKSRIAQKQSRNVVGVLPGSKRADEAVLYMAHWDHLGKHEGETGDNIYNGAVDNATGVAGILEVAEAMAHQEPKPERSVVFLAVTLEESGLLGSKYYVAHPTFPLDKIAGVINIDAMSVAGRAKDVTVTGFGSSELEDILKPLAAAQDRTLHGETSVQSGFYFRSDHFNFAKAGVPALYADGGEDLREGGVEAGRKAAADYGANRYHGPKDEFDAATWKLDGTVEDLQLMYGVGKELAGGDRWPNWYAGNPFKAARDAMMKDKVPAK
>NZ_CP040434.1|WP_049441862.1|387445_388657_+|tyrosine--tRNA-ligase
MSSIEEALALIGRGADEILKLEDLRARLQEGRPLRIKAGFDPTAPDLHLGHTVLLNKMRQFQDLGHQVIFLIGDFTGMIGDPSGKSLTRKPLSRDDVLANARTYEEQVFKVLDRSRTEVRFNSEWFGKMGAADMIRLAGQHTVARMLERDDFAKRYAAQQSIAIHEFLYPLVQGYDSVALEADVELGGTDQKFNLLMGRGLQEHHGQKPQVVLTMPLLEGLDGVNKMSKSLGNYIGISEPAIDIVTKTMKVDDTLMWRWIELLSFDISQAEAVQLREQVAKGGLNPRVVKLRLARELATRFHDAAAAEQAIAGWEAAVTGQGDITQLPLQDVAIPAEGLRIAALLTAAGLTPSNSEANRKLKERAVKVDGEVVEDGQQVLQPGFEGLLQVGKRTFARVRLVTA
>NZ_CP040434.1|WP_014645680.1|385805_387278_-|peptidoglycan-DD-metalloendopeptidase-family-protein
MHNSEQGRARKQRFQERLHVLHDNTLHRKLRQHLPAAFNERWTRRHWMHASLFATIGALVATIVPGFSHTIDAPYADSHTSLALPLPPLTMARQQQVPGDSWQVLRVQRGQTLSDLFDKAGIPATTLHRVLDHPGAREALTKLRPGAEIAFDMPLSGDLRSIRFDRDADNRVELSLAGDDIKEKVTKRESSTRTVVTSGEITSSLYAAARRAGLSPSAIATMTDDIFKYDIDFSKDLQPGDRFSVVMDETWREGEKVDTSKILAATFTTGGKTYSGFRFDRNGKSEYYDINGRSLKKSFIRMPIPFARLSSTFGARKHPVLGKMRMHKGVDYAARTGTPIMAAGDARVQFAGVQRGYGNVVILDHGRGHTTLYGHMSRFANIKTGQRVAQGTVIGYVGSTGLATGPHLHYEFRVNGEHRNPLTVTMPPPEPLKGAELVAFRAQTAPAMARIQGMEKLIYADASPAPTSRDEAAPEVASAKDKQATGRKRG
>NZ_CP040434.1|WP_080355816.1|384611_385739_-|anhydro-N-acetylmuramic-acid-kinase
MNTTADADAPLYLGLMSGTSADGIDAALVQFPAGGGCRFVHGLTARWEPVLRARLVALGEGGPLESLEELGELDARIAINFAGAANQLLAEAGVDRSQVRAIGSHGQTVRHRPLADPAFTVQLGDGNRIAELTGITTVSDFRRRDVAAGGHGAPLMPAFHLGMLGTADEDRAVLNLGGIANLTLIPREGAVRGFDTGPANALMDAWCQRHTGRTFDADGAYAASGTLDEGLLAGWCSDPWFALPPPKSTGREQFHLSWAEAHMGEGEYAAADVQATLLELTVATVADALLAQQPQTRRLLVCGGGVRNRQLMKRLAARLPEVQVESSAVHGLDPEYVEAMGFAWLAQRTMDGLAGNLPSVTGATGPRILGAIHLA
>NZ_CP040434.1|WP_014645678.1|384274_384505_+|hypothetical-protein
MADVVLRDLDPLLLERIRRVAVARGWTHEQTCAALLEQGLFSSELEVRSGFGDPEVDALSAAIAALQALPAGQGFD
>NZ_CP040434.1|WP_014645677.1|382891_384196_+|MFS-transporter
MTEAATPVSYKGWAGIKRAFGTPSALTMAMLGFGSGLPFLLIASQTLSTRLRDVGLDLGSIGLISLASFFYLLKFLWAPLLDRYAFPLLGRLGRRRSWLLVSQVLVLVGLVALAFVRPEQGVWPLVMWVLVASFAGATQDSAVDAYRIEIAPQTAQAALAATYTLGYRIGLILAGAGALYLAQFEGWIVAYLAMAALMLLPIVTTLLCAEPQRPATAVQRRIDIAEAFVQPISSFFSRNGVALALVLLAFVGLFKFPDQVIGVMAGPFYLDSGFDKADIATVSKLFGVWMGIGGAFLGGIAVAAFGFRRMLLVAALGVALSNLAFLLMAHNPGKLWAFYAALSADNLFQGFAGTVLVAFMSSLTDRNFTATQYALLVSLANLPGKFVGGVSGYIVEATSYSTFFILSSITVVPTLLLLAWLWPRIADRGPPPVA
>NZ_CP040434.1|WP_041862998.1|382094_382895_+|exodeoxyribonuclease-III
MRIISFNANGIRSAATKGFLDWFRAQDADVLCIQETKAQEDQLTDPMFRPDGHHCFYRDAITKKGYSGVAIYSKREPDQVITSLGWAPFDDEGRYIEARYGNLSVVSFYIPSGSSGDLRQGFKFEVMEWLRPILEAWARSGRDYVLCGDWNIVRSALDIKNWKSNQKNSGCLPEERDWLNALCADHGQATDVAGGRGWADAYRLLNPTGEDYTWWSNRGAARANNVGWRIDYQFITPGLRDRLRSCSIYRDERFSDHAPFTVDYDL
>NZ_CP040434.1|WP_032961411.1|381272_381932_-|orotate-phosphoribosyltransferase
MSDHRHRFLQLALTADALRFGQFTLKSGRLSPYFFNAGRFDSGSLLSQLGACYADAIDATGIKYDVVFGPAYKGIPLATAMACELAQRGRDLPLSFNRKEAKDHGEGGQLIGADLNGKRVLIVDDVITAGTAIREALGIIRAAGGTPAGIVVALDRQEIASEADRRSAAQSVAEEAGIPVIAVASLADLLDFASGNPELVGYRQPLEAYRAQYGVRSIR
>NZ_CP040434.1|WP_014645674.1|380591_381254_-|hypothetical-protein
MSRVPAVLFAGLLLAVPFTVPAQSRDGGKVEKKLYCWNEGKERICSDSLPADAVNHAREEFNAKSGLRNAQVQRALTDEERAAASTVAQQQQLDLMAEQTRQRTEQAMLSTYGSEDDLRRVFAERQEVLDNNLKTAEYNVTSLRESLVALLSAAGDRELAGGKVADKQAEAIRQRHIQLQSQQRLQAGFLQQQQALKAEIDSTLQRYRELKGVAQASQAP
>NZ_CP040434.1|WP_005407770.1|380278_380371_-|potassium-transporting-ATPase-subunit-F
MSPWLSLLCGVLVLVAAAYLLYVVLRPESF
>NZ_CP040434.1|WP_014645683.1|403123_404425_+|peptidoglycan-DD-metalloendopeptidase-family-protein
MRDNAFPSRRHHIAAVRGGRWLLLGLAVALALPLPGAAQTTRETERKLQKLRTELKGVAQERRQIEGQRGQASQQLREADEKVARTGRALAQTEAALREQAQALAQAEQRRSSLQTNLAQQHRELAGLLRAAYQLGNHAPLKLLLSQDTVADANRALAYHRYLQRERAQRITTLTADLKELEALQAQIAERKQKLQGAQQDQKQQAAALAADRRDRAQTVASLDERFKDRREKEQALGQDAKALETLLANLRAAAARAEAERRAAARRAAAEKAAAERAARQAAAQGRPPPPATKVPPAVASAPAPKVGGLGWPLSGNLLARYGGKLPDGRTSSGVLIGAPAGSTVTAVADGTVVFSDWMTGYGMILIVDHGNGYMSLYAHNDTLLKDAGARVSRGDAVAKVGNSGGQGVTALYFELRRGGQPVNPDSWLQRR
>NZ_CP040434.1|WP_154344194.1|404533_405994_+|PDZ-domain-containing-protein
MRAARTATLLLALLPALSWAQQTAPAPSQETSGQAANSEEAVTSKVPLEDIRRFVAVYNAVRAAYVDPVDDKKLMQSAVRGLLLDLDPHSTYFNKEDAQAFDEQANGAYEGIGVELQQQPDNASMKVIAPIDDTPAAKAGILAGDLIIAIDGKPISAIDASEPLRGPAGSKVVLTIVREGKPKPFDVSLTRQTIRVTSVRSRLLEPGYGYIRLSTFQADTGSDFQKHVQQLQKQSGGQLKGLVLDLRSNPGGLLTAAVQVADDLLDKGNIVSTRGRISISDARFDATPGDLLKGAPVVVLADAGSASASEVLAGALRDNKRARVVGSRTFGKGSVQTVLPLDNGDSVKLTTARYYTPSGKSIQATGIVPDVELKPAATPAEDALPASLSDYSEATLPGHLRGDDEGTEGYHAGAVLPGDGPINDALAELKNPGSVAARLKAEAAKADAAKAAKAAAAKPEAKPEAKPEAKPEAKPEAKPEPVPAKP
>NZ_CP040434.1|WP_005414994.1|406077_406770_-|rhomboid-family-intramembrane-serine-protease
MFVSLPSRKKAALRWATPVLFASLWLAFLWSISRPDDARGSLWLDWGALSTGLTRPLDWWATLQDGSVLRLFTALFLHADWSHLLGNLVFLLIFGLPAERVLGPWRLLLLFLVGGAVSNLVAIYTMGSPDQIIIGASGAVSALIGAYLALFPGARLGVVIPLGLFLEFVRAPAYLLIGVWAALQVVFAHIGPSFGMVAWWAHIGGFVFGVVYGVYVRAAIARRLRKRHGF
>NZ_CP040434.1|WP_049419231.1|406995_408423_+|membrane-protein
MQTASTIARLTLLAVGVAGALAAADANAAAFQLKENSAKGLGRAFAGSTSTEGDASVIATNPASMRLLDGTLVQGDVSAISFGAKFRGQGKYANGAPISGGNGGDAGMIAPVPAAYFHVPFGENDNMHFGASLTVPFGFKTEYDRDWVGRYNGVKTELQAIDLGVAFSYDVNPYLSFGASVFAERLNVDLTSAVDTGTAINATAQRTAAARVLAAGGTAAQAAAASQAAARQAAQLGFSPGTADGYLRIKGDEVSVGYTLGMTVTPVEGTNIAFSYRSKVEHKITDGKADFTIPQNAAAFLATAAPGTFIDSNGRATITLPASATVGFTHRVNDQWQIMAEVTRTAWSKFDQVVVDYDSNQPDSVLPFHYRDTTFASIGTDFRVNDKLTLRGGLAYDQTPTTDAHRDVRVPDTTRKWLSLGMTYAASDKMEYSVGYTHLFTKDPNITSTSATGNTVTGKYKVSGDVLAASMQYKF
>NZ_CP040434.1|WP_111206331.1|408536_409136_+|nicotinamide-mononucleotide-transporter
MNLSDPNFQLELAANIAVAGSILLAGRNNVHTWWLGIVGCALFAAVFERSHLYADMVLQFFFIAISVLGWWQWLRGDHGAPLPITSLRPRAWAWLAPLAVVATFGYGWMLTRLTNAYAPYIDSAVLVLSVIAQILMMRRKLESWWVWLLVNTVAVPLYYSRGLHLTSILYVGFWINALVALRHWRHLMRDGARAADAAA
>NZ_CP040434.1|WP_111206333.1|409122_410196_+|AAA-family-ATPase
MPLPERVARGLVVGKFCPLHRGHERLIDFAATRCQQLLVIGWSQPGFAGYSAARRERWLRARFPQATVAVLDDARLAALCTQHGLPVRALPQDSDDEQVQRDFTAWLCLNLFGGPVQAVYTGEDYGDGFAQALATHFGAPVRHERLERALDVGQACGTELRSDPHAHRHGLAPQVYADHVQRVAFIGGESSGKTTLARVLAERLQTVWVPEYGRTLWEQRGGELTPGDLLRIAMTQPQHEDEAVRRAHRWLFCDTTPLVTLGYSGWMFGTAPQPLRQAARRRYDLLFLCAPDIPFDQDGTRVGEAFRTQQHAWYLEQLQAEGVEHVLLEGDLETRIARVQGELAKRADNRFSVALPL
>NZ_CP040434.1|WP_014645688.1|410347_413566_-|bifunctional-proline-dehydrogenase/L-glutamate-gamma-semialdehyde-dehydrogenase-PutA
MNAPSSSPAASDAQRPGVLLSPELPAPPNPFRQAITDAWLKDEASHVRELLAQARLPADEQARVQALAADLVGRVRVRAKDQGAIEAFMRQYDLGSEEGVLLMCVAEALLRIPDQDTADKLIRDKLADADWEKHLGGSDSVLVNASTWGLMLTGKLVQMNDATRADAPSAFKRLVGRVGEPVVRLAVRQAMKIMGHQFVMGRTISEALSRSHKGDNANYRYSFDMLGEGALTMKDALRYLEDYRRAIHAIGGDHKARGGRPDGDVNNAPGISIKLSALYPRYEHAKRERVLKDLVPGVLELAQLAKSYGIGCTVDAEESDRLELSLDIIEQVFSDASLAGWDGFGVVVQAYQKRTPYTIDHLADMARRAGRRLQVRLVKGAYWDAEIKRAQIEGYPGYPVFTRKQNTDVSYLACAKRLFTHADAIYPMFATHNAHTIAAVRSIANGGVYEHQKLHGMGDDLYAEVVPADRLGLPCRVYAPVGSHEDLLPYLVRRLLENGANSSFVNRITDERVPIADLIRDPVEMVASFASIPHPKIPLPVDLLRSQNHDRKNSMGANLANDNELRALAEQLNAAVKPWQAAPLVPGANPAGASLPVTNPADTREVVGQWLAADAATVQKALANAVAAQPAWNRTPAASRAAILEHAADQLEARMPEFMALCVKEAGKSLPDSIAEVREAVDFLRYYAKQAREQFSHAEKLPSPTGESNELQLHGRGVFVCISPWNFPLAIFLGQVAAALAAGNSVIAKPAEQTNLIGYYAVKLLHEAGVPAEVVQYLPGDGATVGAALTADPRVAGVAFTGSTDTARAINRAMAARDAAIGVLIAETGGQNAFIADSSALPEQLVKDAIGSAFTSAGQRCSAARVLFVQDDIADKVMTMLAGAMKELKVGNPGLLSTDVGPVIDADALKILQDHAERMDREARLIAAAELSAEAANGTFFAPRAYELKDLGQLHKEIFGPVLHVIRWKGDQLDAVIDQINATGYGLTLGVHSRIDETVDRISNGVHVGNVYVNRNQIGAVVGVQPFGGQGLSGTGPKAGGPHYLLRFATEKTVTVNTTAAGGNASLLTLGD
>NZ_CP040434.1|WP_004153894.1|413840_414317_+|DUF2244-domain-containing-protein
MIEVLPAPDGSGTQLRLRPPRALDARQFVLLFTVLSGAMWLVSALGWLAGNAFAPLFALLYSLVLAAALRALWRSGERQEEIRVVPAYVEVIPVPGGSPVFRAHPHWVRLLTDDERVRLASSGRQVEVGSFLAPAERQTLAETLESLLAASDGGNRRR
>NZ_CP040434.1|WP_046428202.1|414328_415282_+|cytochrome-c-oxidase-subunit-II
MKQSSRWGTKCVAVVTAMVAGGLMPALAWAQAADPKPWQLNMGKGVTQTSRLAWESNNLSLIICTVIGVIVFGAMAYAIFKFRKSKGAVAATFSHNTKAEIIWTVIPVIILIVMAWPATANLIKMYDTRDAEMTVKVTGYQWMWKYEYLGENVTFTSRLDRESDRVRQSGIVPTRESHPHYLLDVDNRLVLPVDTKVRFVITSDDVIHAWWVPALGWKQDAIPGFINEAWTSIEQPGVYRGQCAELCGKDHGFMPIVVEAVSKEEFKQWLAQRKPAPAAAPATPAAPAEPAAPAGEAPAAPAAAEAASAPATAASGA
>NZ_CP040434.1|WP_004153896.1|415341_416949_+|cytochrome-c-oxidase-subunit-I
MAHSAVGHDDHHHQQSFFERWFFSTNHKDIGTLYLGFSFIMFIIGAAMSVVIRAELAQPGLQFVKPEFFNQMTTVHALVMIFGGVMPAFVGLANWMIPLQIGAPDMALPRMNNWSFWLLPVAFSLLLLTLFLPGGAPAGGWTLYPPLSLQGGYNVAFSVFAIHVAGISSIMGAINIIATVLNMRAPGIDLLKMPIFCWAWLITAFLLIAVMPVLAGAVTMLLTDKFFGTSFFNAAGGGDPVMYQHIFWFFGHPEVYIMILPAFGVVSEIIPTFSRKPLFGYQAMVYATAAIAFLSFIVWAHHMFTVGMPLGGEIYFMFATMLISIPTGVKVFNWVSTMWRGSLTFEAPMLWSVAFVILFTIGGFSGLMLAIVAADFQYHDTYFVVAHFHYVLVTGAVFALIAAVYYWWPKWTGRMYSEKWAKVHFWWSIVFVNLLFFPQHFLGLAGMPRRIPDYSVAFADWNLISSIGAFGMFVTPFMMAAILLSSLRNGEKAEARSWEGARGLEWTLPSPAPAHTFTTPPTIRPGDLAHDDITH

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Crispr_ID: NZ_CP040434_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP040434_4

718559-718652

Orphan

Consensus_repeat	Method
CGTGTCGACCAAGGTCGACACCTACC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP040434_4

>merge|NZ_CP040434|4|718559-718652|CRISPRCasFinder
CGTGTCGACCAAGGTCGACACCTACCAAAGCGGAGGCGCATTGGTGCGCTCTGGTAGGTGCCAACCAGCGTGTCGACCAAGGTCGACACCTACC

>NZ_CP040434|4|3|718559-718652|CRISPRCasFinder
CGTGTCGACCAAGGTCGACACCTACC	AAAGCGGAGGCGCATTGGTGCGCTCTGGTAGGTGCCAACCAG
CGTGTCGACCAAGGTCGACACCTACC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP040434.1\|WP_032956659.1\|731231_732953_-\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|367906
NZ_CP040434.1\|WP_111205757.1\|726567_728589_+\|acyltransferase	unknown	unknown	gnl\|CDD\|224748
NZ_CP040434.1\|WP_111205758.1\|728700_730086_-\|FAD-binding-protein	unknown	unknown	gnl\|CDD\|273050
NZ_CP040434.1\|WP_014645933.1\|733034_733853_+\|16S-rRNA-(cytidine(1402)-2'-O)-methyltransferase	unknown	unknown	gnl\|CDD\|223390
NZ_CP040434.1\|WP_111205754.1\|719480_719891_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040434.1\|WP_049440205.1\|730873_731269_-\|YraN-family-protein	unknown	unknown	gnl\|CDD\|237119
NZ_CP040434.1\|WP_049442182.1\|710165_711251_+\|bifunctional-diaminohydroxyphosphoribosylaminopyrimidine-deaminase/5-amino-6-(5-phosphoribosylamino)uracil-reductase-RibD	unknown	unknown	gnl\|CDD\|182729
NZ_CP040434.1\|WP_005415267.1\|716201_716669_+\|6,7-dimethyl-8-ribityllumazine-synthase	unknown	unknown	gnl\|CDD\|234606
NZ_CP040434.1\|WP_010481984.1\|709523_710045_+\|transcriptional-repressor-NrdR	unknown	unknown	gnl\|CDD\|234774
NZ_CP040434.1\|WP_111205756.1\|723114_726372_+\|autotransporter-outer-membrane-beta-barrel-domain-containing-protein	unknown	unknown	gnl\|CDD\|237940
NZ_CP040434.1\|WP_080052962.1\|711287_711716_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040434.1\|WP_005408062.1\|716665_717145_+\|transcription-antitermination-factor-NusB	unknown	unknown	gnl\|CDD\|234686
NZ_CP040434.1\|WP_111205755.1\|720347_722795_-\|autotransporter-outer-membrane-beta-barrel-domain-containing-protein	unknown	unknown	gnl\|CDD\|273608
NZ_CP040434.1\|WP_049442185.1\|717270_718233_+\|thiamine-phosphate-kinase	unknown	unknown	gnl\|CDD\|235583
NZ_CP040434.1\|WP_111206810.1\|711811_712696_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040434.1\|WP_111206811.1\|714940_716041_+\|3,4-dihydroxy-2-butanone-4-phosphate-synthase	unknown	unknown	gnl\|CDD\|237587
NZ_CP040434.1\|WP_014645920.1\|712849_713470_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|275096
NZ_CP040434.1\|WP_111205759.1\|730082_730763_-\|metal-dependent-hydrolase	unknown	unknown	gnl\|CDD\|377294
NZ_CP040434.1\|WP_014645921.1\|714317_714944_+\|riboflavin-synthase	unknown	unknown	gnl\|CDD\|236455
NZ_CP040434.1\|WP_111205753.1\|718981_719353_-\|DUF805-domain-containing-protein	unknown	unknown	gnl\|CDD\|377540

Protein	Function_ID	Function_description	E-value
NZ_CP040434.1\|WP_032956659.1\|731231_732953_-\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|367906	pfam04348, LppC, LppC putative lipoprotein. This family includes several bacterial outer membrane antigens, whose molecular function is unknown.	6.72968e-109
NZ_CP040434.1\|WP_111205757.1\|726567_728589_+\|acyltransferase	gnl\|CDD\|224748	COG1835, COG1835, Predicted acyltransferases [Lipid metabolism].	4.63498e-58
NZ_CP040434.1\|WP_111205758.1\|728700_730086_-\|FAD-binding-protein	gnl\|CDD\|273050	TIGR00387, Glycolate_oxidase_subunit_glcD., glycolate oxidase, subunit GlcD. This protein, the glycolate oxidase GlcD subunit, is similar in sequence to that of several D-lactate dehydrogenases, including that of E. coli. The glycolate oxidase has been found to have some D-lactate dehydrogenase activity. [Energy metabolism, Other].	2.54739e-136
NZ_CP040434.1\|WP_014645933.1\|733034_733853_+\|16S-rRNA-(cytidine(1402)-2'-O)-methyltransferase	gnl\|CDD\|223390	COG0313, COG0313, Predicted methyltransferases [General function prediction only].	4.16494e-126
NZ_CP040434.1\|WP_049440205.1\|730873_731269_-\|YraN-family-protein	gnl\|CDD\|237119	PRK12497, PRK12497, YraN family protein.	6.67797e-49
NZ_CP040434.1\|WP_049442182.1\|710165_711251_+\|bifunctional-diaminohydroxyphosphoribosylaminopyrimidine-deaminase/5-amino-6-(5-phosphoribosylamino)uracil-reductase-RibD	gnl\|CDD\|182729	PRK10786, ribD, bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD.	2.4635e-134
NZ_CP040434.1\|WP_005415267.1\|716201_716669_+\|6,7-dimethyl-8-ribityllumazine-synthase	gnl\|CDD\|234606	PRK00061, ribH, 6,7-dimethyl-8-ribityllumazine synthase; Provisional.	6.88487e-67
NZ_CP040434.1\|WP_010481984.1\|709523_710045_+\|transcriptional-repressor-NrdR	gnl\|CDD\|234774	PRK00464, nrdR, transcriptional repressor NrdR.	3.42163e-86
NZ_CP040434.1\|WP_005408062.1\|716665_717145_+\|transcription-antitermination-factor-NusB	gnl\|CDD\|234686	PRK00202, nusB, transcription antitermination factor NusB.	1.82996e-58
NZ_CP040434.1\|WP_111205755.1\|720347_722795_-\|autotransporter-outer-membrane-beta-barrel-domain-containing-protein	gnl\|CDD\|273608	TIGR01414, Contains:_AIDA-I_translocator, outer membrane autotransporter barrel domain. A number of Gram-negative bacterial proteins, mostly found in pathogens and associated with virulence, contain a conserved C-terminal domain that integrates into the outer membrane and enables the N-terminal region to be delivered across the membrane. This C-terminal autotransporter domain is about 400 amino acids in length and includes the aromatic amino acid-rich OMP signal, typically ending with a Phe or Trp residue, at the extreme C-terminus. [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis].	2.11581e-68
NZ_CP040434.1\|WP_111205753.1\|718981_719353_-\|DUF805-domain-containing-protein	gnl\|CDD\|377540	pfam05656, DUF805, Protein of unknown function (DUF805). This family consists of several bacterial proteins of unknown function.	1.39024e-28
NZ_CP040434.1\|WP_049442185.1\|717270_718233_+\|thiamine-phosphate-kinase	gnl\|CDD\|235583	PRK05731, PRK05731, thiamine monophosphate kinase; Provisional.	3.40228e-138
NZ_CP040434.1\|WP_111206811.1\|714940_716041_+\|3,4-dihydroxy-2-butanone-4-phosphate-synthase	gnl\|CDD\|237587	PRK14019, PRK14019, bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II.	0
NZ_CP040434.1\|WP_014645920.1\|712849_713470_-\|hypothetical-protein	gnl\|CDD\|275096	TIGR04273, activator_of_XA21-mediated_immunity_Ax21, sulfation-dependent quorum factor, Ax21 family. This family consists of proteins closely related to Ax21 (Activator of XA21-mediated immunity), a protein that is secreted by a type I secretion system (RaxABC), and that appears to be sulfated on an N-terminal region tryosine in a motif LSYN. Ax21 acts in a quorum-sensing system. Homologous peptide-mediated quorum-sensing systems appear to exist in other species, such as the emerging opportunistic pathogen Stenotrophomonas maltophilia. Intriguingly, the rice genome encodes a receptor (XA21) for this protein that triggers innate immunity. [Cellular processes, Pathogenesis].	3.85817e-20
NZ_CP040434.1\|WP_111205759.1\|730082_730763_-\|metal-dependent-hydrolase	gnl\|CDD\|377294	pfam04307, YdjM, LexA-binding, inner membrane-associated putative hydrolase. YdjM is a family of putative LexA-binding proteins. Members are predicted to be membrane-bound metal-dependent hydrolases that may be acting as phospholipases. It is a member of the SOS network, that rescues cells from UV and other DNA-damage. Expression of YdjM is regulated by LexA.	6.75804e-14
NZ_CP040434.1\|WP_014645921.1\|714317_714944_+\|riboflavin-synthase	gnl\|CDD\|236455	PRK09289, PRK09289, riboflavin synthase.	6.42582e-107
NZ_CP040434.1\|WP_111205756.1\|723114_726372_+\|autotransporter-outer-membrane-beta-barrel-domain-containing-protein	gnl\|CDD\|237940	PRK15313, PRK15313, intestinal colonization autotransporter adhesin MisL.	6.00899e-81

>NZ_CP040434.1|WP_049442185.1|717270_718233_+|thiamine-phosphate-kinase
MSLAEFALIDRIRARTLERDDILLGIGDDAALLQPRANEQLVVTADTLNSGVHFPVETPAFDIGWKTLAVNLSDLAAMGARPAWCTLALSLPEASEDWIEAFADGFFALADQHDIALIGGDTTRGPLSLSVTAMGQVGRGQALRRDRAQVGDDVWVSGTLGDAAGALRLWQQGALSIATATLLADYESLRLRLLRPTPRVTLGLRLRAFAHAAVDVSDGLLADLGHIATRSNVAAHVDADSLPISHALRELLGRDTARDCALRGGDDYELCFTAAADQRDALHYLAESLDVPLTRIGRIAEGQGVHVDGEAADGGYQHFA
>NZ_CP040434.1|WP_005408062.1|716665_717145_+|transcription-antitermination-factor-NusB
MNKNTQGKPSGKPVRRDGVDPVLRSRARRRAVQAIYAWQISGGNAQSLIAQFAHEQAREIADLAYFEALLHGVLDNRRDIDEALGPYLDRGIEEVDAIERAVLRLAAYELRYRLDVPYRVVINEAIESAKRFGSEHGHTYVNGVLDRAAVEWRKVESGH
>NZ_CP040434.1|WP_005415267.1|716201_716669_+|6,7-dimethyl-8-ribityllumazine-synthase
MSHYEGDLRTPESARFAILASRWNARITDALVAGARLSLAGNGITEANIDVIRVPGAWELPLVAARLAAAHEHAAILTLGCVIRGDTRHYEHVADRCAEGLMRVQLDFGVPVLNGVLAVERVEDAEARAGGSHGNKGEEVALAALEMVNLLEQLP
>NZ_CP040434.1|WP_111206811.1|714940_716041_+|3,4-dihydroxy-2-butanone-4-phosphate-synthase
MNFAPIPEILEDIRLGRMVVIVDDEDRENEGDLIMAAELVKPSDINFMVTHGRGLVCLPLTRSRAADLGLAPMVQANTAQFQTNFTVSIEAAEGVTTGISAHDRAHTIRTAVKPNAKPSDLHQPGHIFPLIAQPGGVLTRAGHTEAGVDLAMLAGLEPAGVLVEILNPDGSMARRPELEVFAREHGLKMGSIADLIAYRLATEKTVERVDEREIDTEFGPFKLVTYRDRIAHDLHFALVRGTPDADTPTLVRVQVENPLADLLHWRRDDFGVAATDALRAIDAEGAGVMVVLSAPRDGEALLARLRQQPAPVVPGKDKDVGQWRRNGAGAQILSDLGLGKLRVLGTPRRQVGLAGYGLEVVQTVTL
>NZ_CP040434.1|WP_014645921.1|714317_714944_+|riboflavin-synthase
MFTGIIEGVGRLAARESIGGDVRFTFHVGNLPFDHVQMGESIAINGVCLTVIAFDASSFQADASTETLGLTTLGQLGEGAVINLERAMRPTDRLGGHLVSGHVDGLGQVLSIHDDARAQRWRFAAPASLRRYIAKKGSICVDGVSLTVNEVDDDGFEVALIPHTVANTAFSATGVGSAVNLEIDLVARYVERLMGVPSNGQHPQGDAA
>NZ_CP040434.1|WP_014645920.1|712849_713470_-|hypothetical-protein
MRKILIVAALLAAAPFSASADALSYTYVEGGWTQVQVDDNVLDDPKVDGGYLRGSVALAEQVYVFGGWSRTSKTRHYGEDSLKLELNQPELGIGYHMPWTDRLDFTADAAWVRQNAESTLRYDGVRYHGKDHTNLGRVTMGIRGKPSRMTEAWAKAGYMDGGNNYKGTWVGTVGGQVNFTKTWGVVGEIAGYRDVTQYSVGVRASF
>NZ_CP040434.1|WP_111206810.1|711811_712696_-|hypothetical-protein
MKTPLRTLLASALLAAPLLAGAAPATLTPEQAFDLYARVLLEDDAAATRALNDALKPAFEGQDAVTPNPGALAKALADPWQVVLASTGAKADAAASEALYAKALRDSKCRASKSVIEDNEYVEDQKLARITFSCQVPDLGKVRPLFAASLAADASPAARRQFTDAYTQALQSGARVPVSGTFTLYPAKDNGYWYSGNFDDLVGTVTGALAPFEDWMQDAQAASAPKVTGVPGCDLLLQQHRACVAKIAPDQISGVDAMTEELKAKAKVKSAEDMTQECKALRPIAEMMWTDECA
>NZ_CP040434.1|WP_080052962.1|711287_711716_-|hypothetical-protein
MVNAVALFHQGNRMKHRMTSTALMLLALMVCWQAEASRFKATKIIVVQPSVAFESTQLSDRHLDAWMSEDDHCRDFLMYHDQCAVLVLPDEYDDGFTRRQLRFKARQLPGEALGAYCRDLHVLWKQQWKGQCPVGEEDDEAA
>NZ_CP040434.1|WP_049442182.1|710165_711251_+|bifunctional-diaminohydroxyphosphoribosylaminopyrimidine-deaminase/5-amino-6-(5-phosphoribosylamino)uracil-reductase-RibD
MTTSFSVLDHLHMANALRLAERAAYTTRPNPMVGCVIAHGERVVGQGWHQRAGGPHAEVFALREAGGEARGATAYVTLEPCAHYGRTPPCALALIEAGVSRVVAAMRDPFPKVDGGGFDLLRNAGIDVAEGLMAVQARELNKGFLSRVERNRPWLRVKLAASLDGRTAMADGSSKWITGPAAREDVQHWRARAGAILTGADTVLADDPMLTVRLADTEVMAPLRVVLDSRLRSLECSRVREGGAPTLYLHAAAVSAPDAADAEFASVPSAEGRLDLGAVLALLAERGINEVHTEAGATLSGALLRAGWVDELLLYQAPTLLGDNGRPLLAGLGIDAMDQQRRLRVVDQRQVGEDNRLLLRP
>NZ_CP040434.1|WP_010481984.1|709523_710045_+|transcriptional-repressor-NrdR
MHCPFCQHADTRVIDSRVSEDGATIRRRRECEACGERFSTLETVELKLPAIVKSDGTREAFDQRKVRAGFDRALQKRAVAEDKIEAAVRAVVHQLRISGEREVPSIKVGEFVMNELRKLDHVGYVRFASVYRSFEDVADFREEIEKLERDLPSSTEQLQLLGDVIALTKKKKG
>NZ_CP040434.1|WP_111205753.1|718981_719353_-|DUF805-domain-containing-protein
MHKMMIPLVRYAQFNGRASRGEFWWFQLFIMILLIPSNVLGFIAGYTGSSTLALISTGVGALVWLAIIVPMIAVIVRRLHDTDRSGWWYLLMLVPIVGLVVLVFLLLPGTPGNNRFDAAVPHV
>NZ_CP040434.1|WP_111205754.1|719480_719891_-|hypothetical-protein
MTASPYPHLFATLGEAATRLPDDLARTLEDTFVALQTGNSPGAITLQACLQYIRQGDAADGQPWPGHNRTPGQRLALARIDRANAGLSFLLELLHATERVRVDGDIGQQMGDGAREGLLLACRGLAEYVDVQLRAA
>NZ_CP040434.1|WP_111205755.1|720347_722795_-|autotransporter-outer-membrane-beta-barrel-domain-containing-protein
MKRTATASHPLTPRPLFRSLLLALASLPAGVVLAGDLDGQTAEVGAGDPVEAWTLKNGSLLTVNGGAAQTILADDSRVTLVASTVSRKPSGDYSEHAVKLDGNSLLDARDSTFVGNLRVHDQAQVTLSGSHVVVSPGAGQQPGDRQSVGLGFSGMSVGSGRILLDASTVRVDALPTSSGNPLSDGVGALMTHGSLVLHNRSRIDAENHGVVISPVANGQNFEVHLDRSTLSAKSAAAIWVHGRASDAHIDVAVANGSQLHGGDGILIQLKGRTAVAAGRTTVDFTVDDSRIAGDVVLDTTTVPNGMINVELRNKAQIDGRFFNVTSASIDGDSTWLMSGDSTVGHLALGSTGTVALGNGSTFNTLTVDTFDGAGGTLLFNTQLGDDSSATDTLIIKGDANGQANVRVLNAGGAGAKTDKGIKLIRVGGASNAQFDLQGRAVGGQYEYFLFKDATNGGWYLRSELAGAPDPCVIDPTLPECKPVDPVDPVDPVDPVDPVDPVDPVDPIDPTPVLRPEAGAYLANQFAMDQLLRHGWRDRQGGNTSAIDGVRGWARVDATQSKLSAVEDQLELRVDRSRLQLGADIGVFDNGQGRVGVMGTLAKSDATSRSQLTGYSARGKLNGGALGVYGNWSNDALYVDASVQRGHFRNRVQGEGLAEERYDSDIWQSSLEAGYRFGIGQIGSTALSLQPELQLVYTDANTDRHEEANGTVVRSLGDSGLSGRVGLRLQGEGRSAAGASVSPYVVANWYRDGASNGMAFDDEALKASVPRNRYELNAGARVDFRSGLSAWGGFGVMRGDHGYREATANLSMSYKW
>NZ_CP040434.1|WP_111205756.1|723114_726372_+|autotransporter-outer-membrane-beta-barrel-domain-containing-protein
MHTPTPRHHALAAALAIALLASIPASAQQIVADGDDQMPAEGDYHTTEPVLPGDPSGHAFYAVNGGRILPTGPVNLSTEGRGAHAAHAEGTGSLISLQGASVSTTGISAAGASVATGARLEAADVVIETRGNSAHGVQVQGADAVLRNVQVRSTGGDALRLMGGTLQVQGAQLQVNRYGTYGLYANAGTATLDGVHIDMAGDAGNGVLATGTAEVVLQDASIGRVGHSGVAATAHRGARLVMKGVDIDMRGDAAVGLAMGGSVNVSDSRISVQGAHGRAVDQSGGALDVQSSELSGNTGLRLMDNGSVNLRDSSIRSELVALDINGRGNVVTVERSSLATSAGTAIWMPNDSTLVLSESSVVAQGDGGLGLDARGGSAQLFSTNLRTAGHSAHGLYAQGGAGRQPGIEAVDTQVLTEGDGSAAAIARTGGTVTLVDSRLQTVGRSSHGVIAGGAGQIALNNTHVRTEGEGAWAAVINDNGRMRIDGGSLVSVQHGGVWLRSSRDPGLTLSNGAVVSGGNGIALALDAAVAGRFDVVLEGRSRMDGDIAITPEDEDAGLPPQSDVHVRLADGSLWQGSSDLVQTMAIENGSQWTLTGDATVGELQVLNSGVALSDGSGRFNTLTVDGDLHSAGATFLFQGTLAGDDSAMDRLHVRGDSSGDALIAVKNIGGVGAPTVDGIALIEIDGASLASYTLSGRAVGGSYEYFLFQGGLADPSDGNWYLRSQWFDICQDNPAAPGCVVDPGPDPDPDPTDPTDPIDPIDPIDPGDPGDPGDPILPPPVLRPEAGAYLANQSAAINLFAHRMHERNGARSMDGERQAWARVGRNQADFSAVGGQLSVDGTASVLQIGTDLLQRGNAVAGVMLGSGRADSSAVSDLTGYSAKGRVRGSAVGVYGTWMQDADSTRGAYVDAALQYGRFDNRVQGIGLAPEHYDSRMATASLEAGYTFKMWQGTASALYVQPQLQLSHVDFRADRHVESNGTVVDHADAGGLSGRLGVRVFGHGTAAGNIVQPYLGVNWLRGSGTSTLQFNGDTLAADVPRNRYEVQAGAELRLGQRWGAWGGMSVQRGDHGYRNVGGQLGLRMAW
>NZ_CP040434.1|WP_111205757.1|726567_728589_+|acyltransferase
MTAQTVAMLPPCLLPVARVSSPERSHNAAIDGLRALAVLAVVLFHTNATWLPGGFTGVDLFFVVSGFVISQSLASRAQASLGAMLLDFYRRRVLRLLPALLVMLMATFVLSALFIPRAWRNEQFDQTGWAALVGFSNIVLAGQQDDYFSPGAELNPFLHTWTLGVEEQFYLVFPLLFFVWLRGRERWPGARWLLPALTMLSLAWAGWQARSAPASAFYLLPARFWELAAGALLYQWMHKRTPRQGSDAAAAAGLALLAAGVLIAPQLAMPVPGVLATVAGTLLLLAGVSTAGTSRIARALGCAPLAYLGRLSYSLYLWHWPLLVLLRWTYGLHGVAPWLYPVLLLAVSAASYHFIERPLRSAAPLLRLAPAKVLAMAFPLVALCGAGAWATVEYHEQVSLSVTRNGYAWQARRYPAWRPLEPVSAPALEGRRLFVAGDSHAAAYRTMTSMVARQTGMEVRQQDRGGCSFVNLLRASPADCQDFIEDTLSTIEREARPGDIVLLTALRMPELRGFDWQRQDAQQIYQQLLAERTPAHAQAARDEAERVLGRLQKLGVQVVIDAPLPLFKAGAYRCSDWFNRRNPACAGGLSMPRADLEMLRAPQMALLDDLAARYPSMTVWDPLPLLCGPQACSAVEDGEPLFFDNDHLSGHGNRVLLPSFRQTLIDIAADKTV
>NZ_CP040434.1|WP_111205758.1|728700_730086_-|FAD-binding-protein
MSPALPAALVAELSTLLGAEGWRMDDSALEANAQDNSWRRQRPAAVALPADVEQVQALVHACRAHGVALVARGAGTGTTGAAVPQPGSIVLSFTRMDRIIEIRAGDRCAVVQPGVLNGTLQQALAPHGLFWAPDPSSAEICSIGGNLACNAGGPRAVKYGTSRDNVLGLVAVTGTGELIRCGGAYTKDATGYDLTHLLVGSEGTLALIVEATLKLTPLPVSQAGLRVLYRDADAAAAAVSRLMSQPVVPTRLEFMDARSLELLRLNGADVPEAGAMLLVEADGDHDTLPYLLQALASAAEGDGMIELDVAMEGRARDQLWAARKALSPALRSVAPGKINEDVVVPVSRIPELVAGVQALARDYTLTIVTFGHAGNGNLHVNILYHPDDADENTRAHAALPRIFELTLALGGTLSGEHGIGLAKRDFMAQAFTPETLATMRAIKAALDPDGILNPGKVLPPA
>NZ_CP040434.1|WP_111205759.1|730082_730763_-|metal-dependent-hydrolase
MPSIITHAAVPLALWCAADRGRIPPRLLVAGVIAAMLPDADVLAFALHIPYADAFGHRGASHSLLFAGVLAALAAAFAFFGSGRPWSAPHSPGSRRPWSEQHSPGSRRPWSAVSCQPRLAPTKAGPTVASTVQAAVFVFVCAASHPLLDAMTSGGLGVALAWPWSEHRFFAPWRPIRVSPFAPQFFSARGVATLLSELRWVWLPLAGAVVAWKLIQPAPAASRDPS
>NZ_CP040434.1|WP_049440205.1|730873_731269_-|YraN-family-protein
MAAGRCRSSVVAERSQRGSAVEAAAEQHLQQAGLQPRARNVRYRGGELDLVMDDAGIVVFVEVRYRARSEYGGGAASVDARKCRRLAHAAQLYLQDHPALANAPCRFDVVEASGEPPQLHWLRDAFRLDDC
>NZ_CP040434.1|WP_032956659.1|731231_732953_-|ABC-transporter-substrate-binding-protein
MNKPAARFSALSLSLMLLAGCATTSLTSTPDSPAQGQALALIEQGKPRDAALQLEGLAATLRGGARSNALADAAWAWHLAGDSARARSLLGQLTARQLSGASLQRYQLTGAELALADKQPAQALALLKDHADSVAVGLRTRWLLARAQALQGTGDAFGAANERARAHAGLTGSARSENQAAIAGLLGTLDDATLRSRAAALPANDPLYNFAGRALIARGLPLPRPFDRDGAAQFDTSKRPPAMSDGYRPPAKLAVLLPLSGRLATAAQPVRDGLLSAYYGESRRRPDINFFDTAGTPAGALAAYDKAVASGADFVVGPLGRDEVDAVYGRQQLQVPVLALNRGKDAPPAGSAGFSLAPEDDGIVAAEYLRGRERNRALVISSNDDTGRRSAAAFAQRFAQRGGQVVATFNVSDAVGDVGAQVRNAGQVDAVFLAVRAPQARLLAPQLALAGAGGATRVGTSQLTVGSGKVEEDVALDGIVYPNEAWNVRSVSGLPSASQVASTLPSARGAAGRLFAFGADAWKITAYLDKLSNEGGLDGATGTLFLDSNGNILRQPAWSTFNGGRPMPIVGGR
>NZ_CP040434.1|WP_014645933.1|733034_733853_+|16S-rRNA-(cytidine(1402)-2'-O)-methyltransferase
MSVPTLYVVATPIGNLADLSPRAQEVLRSVAAICAEDTRRSGQLLSHFGIQQPLVALHEHNEEALAQRLVSRLQAGESLALVSDAGTPLVSDPGFRLVRAARAAGIKVSPVPGACAAIAALSVAGLPSDRFSFEGFLPAKASGRRDRLQALAGEVRTMVFYESSHRIAESLADMAAIFGGERPAVLARELTKLFETVLDGDLAGLLAKVEADDNQRKGEFVVMVQGAGDDEQAQLAHGRRVYAKLSEHLPPSTAAKLAAELTGAPRKALYGS

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Crispr_ID: NZ_CP040434_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP040434_5

846481-846585

Orphan

Consensus_repeat	Method
TTTCCCGGCCAGCGGCCGGCACTACC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP040434_5

>merge|NZ_CP040434|5|846481-846585|CRISPRCasFinder
TTTCCCGGCCAGCGGCCGGCACTACCGGATCCGCGCGTGGTGGTTGCATCTGGTAGGTGCGGGCCTTGGTCCGCACGCTTTTGCCGGCCAGCGGCCGGCACTACC

>NZ_CP040434|5|4|846481-846585|CRISPRCasFinder
TTTCCCGGCCAGCGGCCGGCACTACC	GGATCCGCGCGTGGTGGTTGCATCTGGTAGGTGCGGGCCTTGGTCCGCACGCT
TTTGCCGGCCAGCGGCCGGCACTACC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP040434.1\|WP_014646014.1\|841993_843073_+\|NAD(P)-transhydrogenase-subunit-alpha	unknown	unknown	gnl\|CDD\|240629
NZ_CP040434.1\|WP_046429036.1\|846616_847036_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040434.1\|WP_014646022.1\|847769_848864_+\|branched-chain-amino-acid-aminotransferase	unknown	unknown	gnl\|CDD\|237363
NZ_CP040434.1\|WP_069118531.1\|852062_852656_-\|NAD(P)H:quinone-oxidoreductase	unknown	unknown	gnl\|CDD\|179647
NZ_CP040434.1\|WP_014646027.1\|854004_854580_+\|TlpA-family-protein-disulfide-reductase	unknown	unknown	gnl\|CDD\|239264
NZ_CP040434.1\|WP_014646024.1\|851730_852066_-\|DUF2069-domain-containing-protein	unknown	unknown	gnl\|CDD\|378269
NZ_CP040434.1\|WP_005415385.1\|847158_847710_+\|putative-Fe-S-cluster-assembly-protein-SufT	unknown	unknown	gnl\|CDD\|213809
NZ_CP040434.1\|WP_049406807.1\|855072_855855_-\|polyphosphate-kinase-2	unknown	unknown	gnl\|CDD\|213852
NZ_CP040434.1\|WP_111206816.1\|844975_846436_+\|NAD(P)(+)-transhydrogenase-(Re/Si-specific)-subunit-beta	unknown	unknown	gnl\|CDD\|376743
NZ_CP040434.1\|WP_032956964.1\|843649_843979_-\|membrane-protein	unknown	unknown	gnl\|CDD\|378740
NZ_CP040434.1\|WP_049440131.1\|849334_851077_+\|S8-family-serine-peptidase	unknown	unknown	gnl\|CDD\|173820
NZ_CP040434.1\|WP_111206815.1\|844658_844979_+\|NAD(P)-transhydrogenase-subunit-alpha	unknown	unknown	gnl\|CDD\|378941
NZ_CP040434.1\|WP_014646011.1\|837774_838710_-\|exodeoxyribonuclease-IX	unknown	unknown	gnl\|CDD\|235591
NZ_CP040434.1\|WP_014646015.1\|843193_843646_-\|DUF3106-domain-containing-protein	unknown	unknown	gnl\|CDD\|378633
NZ_CP040434.1\|WP_032956948.1\|852733_854008_+\|YihY-family-inner-membrane-protein	unknown	unknown	gnl\|CDD\|179791
NZ_CP040434.1\|WP_010481766.1\|851165_851651_-\|asparaginase	unknown	unknown	gnl\|CDD\|223330
NZ_CP040434.1\|WP_049408489.1\|837223_837778_-\|NUDIX-hydrolase	unknown	unknown	gnl\|CDD\|239516
NZ_CP040434.1\|WP_080052964.1\|843975_844560_-\|RNA-polymerase-sigma-factor	unknown	unknown	gnl\|CDD\|236367
NZ_CP040434.1\|WP_041863077.1\|839619_841941_+\|DUF1631-domain-containing-protein	unknown	unknown	gnl\|CDD\|377917
NZ_CP040434.1\|WP_014646012.1\|838706_839288_-\|nitroreductase	unknown	unknown	gnl\|CDD\|380312

Protein	Function_ID	Function_description	E-value
NZ_CP040434.1\|WP_014646014.1\|841993_843073_+\|NAD(P)-transhydrogenase-subunit-alpha	gnl\|CDD\|240629	cd05304, Rubrum_tdh, Rubrum transdehydrogenase NAD-binding and catalytic domains. Transhydrogenases found in bacterial and inner mitochondrial membranes link NAD(P)(H)-dependent redox reactions to proton translocation. The energy of the proton electrochemical gradient (delta-p), generated by the respiratory electron transport chain, is consumed by transhydrogenase in NAD(P)+ reduction. Transhydrogenase is likely involved in the regulation of the citric acid cycle. Rubrum transhydrogenase has 3 components, dI, dII, and dIII. dII spans the membrane while dI and dIII protrude on the cytoplasmic/matrix side. DI contains 2 domains in Rossmann-like folds, linked by a long alpha helix, and contains a NAD binding site. Two dI polypeptides (represented in this sub-family) spontaneously form a heterotrimer with dIII in the absence of dII. In the heterotrimer, both dI chains may bind NAD, but only one is well-ordered. dIII also binds a well-ordered NADP, but in a different orientation than a classical Rossmann domain.	0
NZ_CP040434.1\|WP_014646022.1\|847769_848864_+\|branched-chain-amino-acid-aminotransferase	gnl\|CDD\|237363	PRK13357, PRK13357, branched-chain amino acid aminotransferase; Provisional.	0
NZ_CP040434.1\|WP_069118531.1\|852062_852656_-\|NAD(P)H:quinone-oxidoreductase	gnl\|CDD\|179647	PRK03767, PRK03767, NAD(P)H:quinone oxidoreductase; Provisional.	1.4781e-60
NZ_CP040434.1\|WP_014646027.1\|854004_854580_+\|TlpA-family-protein-disulfide-reductase	gnl\|CDD\|239264	cd02966, TlpA_like_family, TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.	6.25819e-35
NZ_CP040434.1\|WP_014646024.1\|851730_852066_-\|DUF2069-domain-containing-protein	gnl\|CDD\|378269	pfam09842, DUF2069, Predicted membrane protein (DUF2069). This domain, found in various prokaryotes, has no known function.	4.35149e-05
NZ_CP040434.1\|WP_049406807.1\|855072_855855_-\|polyphosphate-kinase-2	gnl\|CDD\|213852	TIGR03707, PPK2_P_aer, polyphosphate kinase 2, PA0141 family. Members of this protein family are designated polyphosphate kinase 2 (PPK2) after the characterized protein in Pseudomonas aeruginosa. This family comprises one of three well-separated clades in the larger family described by pfam03976. PA0141 from this family has been shown capable of operating in reverse, with GDP preferred (over ADP) as a substrate, producing GTP (or ATP) by transfer of a phosphate residue from polyphosphate. Most species with a member of this family also encode a polyphosphate kinase 1 (PPK1). [Central intermediary metabolism, Phosphorus compounds].	6.80408e-135
NZ_CP040434.1\|WP_005415385.1\|847158_847710_+\|putative-Fe-S-cluster-assembly-protein-SufT	gnl\|CDD\|213809	TIGR03406, FeS_long_SufT, probable FeS assembly SUF system protein SufT. The function is unknown for this protein family, but members are found almost always in operons for the the SUF system of iron-sulfur cluster biosynthesis. The SUF system is present elsewhere on the chromosome for those few species where SUF genes are not adjacent. This family shares this property of association with the SUF system with a related family, TIGR02945. TIGR02945 consists largely of a DUF59 domain (see pfam01883), while this protein is about double the length, with a unique N-terminal domain and DUF59 C-terminal domain. A location immediately downstream of the cysteine desulfurase gene sufS in many contexts suggests the gene symbol sufT. Note that some other homologs of this family and of TIGR02945, but no actual members of this family, are found in operons associated with phenylacetic acid (or other ring-hydroxylating) degradation pathways. [Biosynthesis of cofactors, prosthetic groups, and carriers, Other].	1.27493e-102
NZ_CP040434.1\|WP_032956964.1\|843649_843979_-\|membrane-protein	gnl\|CDD\|378740	pfam11859, DUF3379, Protein of unknown function (DUF3379). This family of proteins are functionally uncharacterized. This protein is found in bacteria. Proteins in this family are typically between 234 to 251 amino acids in length.	0.00108745
NZ_CP040434.1\|WP_049440131.1\|849334_851077_+\|S8-family-serine-peptidase	gnl\|CDD\|173820	cd07496, Peptidases_S8_13, Peptidase S8 family domain, uncharacterized subfamily 13. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.	1.62205e-125
NZ_CP040434.1\|WP_111206816.1\|844975_846436_+\|NAD(P)(+)-transhydrogenase-(Re/Si-specific)-subunit-beta	gnl\|CDD\|376743	pfam02233, PNTB, NAD(P) transhydrogenase beta subunit. This family corresponds to the beta subunit of NADP transhydrogenase in prokaryotes, and either the protein N- or C terminal in eukaryotes. The domain is often found in conjunction with pfam01262. Pyridine nucleotide transhydrogenase catalyzes the reduction of NAD+ to NADPH. A complete loss of activity occurs upon mutation of Gly314 in E. coli.	0
NZ_CP040434.1\|WP_111206815.1\|844658_844979_+\|NAD(P)-transhydrogenase-subunit-alpha	gnl\|CDD\|378941	pfam12769, PNTB_4TM, 4TM region of pyridine nucleotide transhydrogenase, mitoch. PNTB_4TM is the region upstream of family PNTB, pfam02233, that carries four of this transporters transmembrane regions. PNTB is the beta-subunit of pyridine nucleotide transhydrogenase. This family forms part of the Proton-translocating Transhydrogenase (PTH) Family.	2.89808e-33
NZ_CP040434.1\|WP_014646011.1\|837774_838710_-\|exodeoxyribonuclease-IX	gnl\|CDD\|235591	PRK05755, PRK05755, DNA polymerase I; Provisional.	1.24835e-87
NZ_CP040434.1\|WP_014646015.1\|843193_843646_-\|DUF3106-domain-containing-protein	gnl\|CDD\|378633	pfam11304, DUF3106, Protein of unknown function (DUF3106). Some members in this family of proteins are annotated as transmembrane proteins however this cannot be confirmed. Currently no function is known.	3.66588e-21
NZ_CP040434.1\|WP_032956948.1\|852733_854008_+\|YihY-family-inner-membrane-protein	gnl\|CDD\|179791	PRK04214, rbn, ribonuclease BN/unknown domain fusion protein; Reviewed.	0
NZ_CP040434.1\|WP_010481766.1\|851165_851651_-\|asparaginase	gnl\|CDD\|223330	COG0252, AnsB, L-asparaginase/archaeal Glu-tRNAGln amidotransferase subunit D [Amino acid transport and metabolism / Translation, ribosomal structure and biogenesis].	6.49e-30
NZ_CP040434.1\|WP_049408489.1\|837223_837778_-\|NUDIX-hydrolase	gnl\|CDD\|239516	cd03424, ADPRase_NUDT5, ADP-ribose pyrophosphatase (ADPRase) catalyzes the hydrolysis of ADP-ribose and a variety of additional ADP-sugar conjugates to AMP and ribose-5-phosphate. Like other members of the Nudix hydrolase superfamily, it requires a divalent cation, such as Mg2+, for its activity. It also contains a highly conserved 23-residue Nudix motif (GX5EX7REUXEEXGU, where U = I, L or V) which functions as a metal binding site/catalytic site. In addition to the Nudix motif, there are additional conserved amino acid residues, distal from the signature sequence, that correlate with substrate specificity. In humans, there are four distinct ADPRase activities, three putative cytosolic enzymes (ADPRase-I, -II, and -Mn) and a single mitochondrial enzyme (ADPRase-m). Human ADPRase-II is also referred to as NUDT5. It lacks the N-terminal target sequence unique to mitochondrial ADPRase. The different cytosolic types are distinguished by their specificities for substrate and specific requirement for metal ions. NUDT5 forms a homodimer.	3.37552e-38
NZ_CP040434.1\|WP_080052964.1\|843975_844560_-\|RNA-polymerase-sigma-factor	gnl\|CDD\|236367	PRK09047, PRK09047, RNA polymerase factor sigma-70; Validated.	8.91024e-65
NZ_CP040434.1\|WP_041863077.1\|839619_841941_+\|DUF1631-domain-containing-protein	gnl\|CDD\|377917	pfam07793, DUF1631, Protein of unknown function (DUF1631). The members of this family are sequences derived from a group of hypothetical proteins expressed by certain bacterial species. The region concerned is approximately 440 amino acid residues in length.	0
NZ_CP040434.1\|WP_014646012.1\|838706_839288_-\|nitroreductase	gnl\|CDD\|380312	cd02135, YdjA-like, nitroreductase family protein similar to Escherichia coli YdjA. A subfamily of the nitroreductase family containing uncharacterized proteins that are similar to nitroreductase YdjA from Escherichia coli. Nitroreductase catalyzes the reduction of nitroaromatic compounds such as nitrotoluenes, nitrofurans and nitroimidazoles. This process requires NAD(P)H as electron donor in an obligatory two-electron transfer and uses FMN as cofactor. The enzyme is typically a homodimer. Members of this family are also called NADH dehydrogenase, oxygen-insensitive NAD(P)H nitrogenase or dihydropteridine reductase.	2.7311e-53

>NZ_CP040434.1|WP_111206816.1|844975_846436_+|NAD(P)(+)-transhydrogenase-(Re/Si-specific)-subunit-beta
MNISTVELLDWLVKASYLVAATLFLLGLQRMASPLTARSGIRWAGLGMLLATAATFFLPELHNVPLILVALLLGAGLAWWSAGKVAITDMPQMVALYNGMGGGSAAAIGAVELLRYAFLAHRNTSHWSAQALADLAARQPSGTMLLLAVVGAAIGAVSLSGSVIAWAKLDGRLDKRVTWPGQQVMNLLVALAVVVLAIIAASTLSAWAIVAFFVLALALGVLMTLPIGGADMPVVISLYNAFTGLAVSFEGYVLGNEALIIAGMMVGAAGILLTRLMAKAMNRPIRNVLFSNFGGGAGGEAQAISGAQKPIEAPDVAAMMAYAERVVIVPGYGMAVAQAQHKIWELAQRLGQRGVKVKFAIHPVAGRMPGHMNVLLAEAGVPYDLIADMDDINPEFANTDVVLVIGANDVVNPVARTDPASPIYGMPVLDVVNARNVVVIKRGKGTGFAGIENALFYADNTRMLYGDGAEAAASLVSELKALDGGH
>NZ_CP040434.1|WP_111206815.1|844658_844979_+|NAD(P)-transhydrogenase-subunit-alpha
MSDGFVALYIFMLAAIAGHVIISRVPVILHTPLMSGSNFIHGIVLIGAMVVLGHAQTPLEKVLGFLAVVLGAGNAAGGYVVTARMLEMFKPSAPRGGKDEPKEPQA
>NZ_CP040434.1|WP_080052964.1|843975_844560_-|RNA-polymerase-sigma-factor
MVTPSEEPYPVLVSSPAPPSAETDALPASLEAFLASVGPRAFRFAEAGLRQREDAMDAVQDALLRMLDYTDKPAAEWAPLFWSILRRRVIDLQRRRRFRLPFWRDNQDAEGGEIDWADPGPDPAQAHEQRQQYQQLVDALRTLPARQREAFTLRVLQDLDGATTARAMGCSEGAVKTHLARARQALQDYLETHP
>NZ_CP040434.1|WP_032956964.1|843649_843979_-|membrane-protein
MNRSLPSDDTLRRLHAQSLQALSPATLARLRQARHGATATTHRGRWRWWLASACSLVVALGIGLQFTGHGTLAGPPPDPVLASVEDNGALYDENPDLYLWLGDTDLAME
>NZ_CP040434.1|WP_014646015.1|843193_843646_-|DUF3106-domain-containing-protein
MSRLLALPLLLTLALLPAVPALAQNATPAPAAPVAPLPAWEQLSESQRESLLAPLRDRWNSADAGQRQRMLSHGQRWQSMSPEERDKARRGLRRFEHMSPEQREQARALFGQMRNMPPAQRDALRERWSQMTPEQRRDWVRDNPPPAKPR
>NZ_CP040434.1|WP_014646014.1|841993_843073_+|NAD(P)-transhydrogenase-subunit-alpha
MAVALLGIKETAPGERRVALTPETARKLGALGITVWYEAGAGLAAGFTDAAYDDAGARVFDAGRWAEIDILLCVQAPPATVLEQLRPGASVVGLLAPANDPALAALAADDRLQLFPLQQLPRTTRAQAMDVLSSQAGMAGYKAALIAAERAPRFFPMLTTAAGTVRPAKVLVIGAGVAGLQAIATARRLGAQVEGFDVRPETREQIQSLGARFLDLGVSAAGEGGYARALTDEERAEQQRRLADHLRGVDVVICTAAVPGRPAPTIVTAAMVEGMATGSVIVDLAAESGGNCALTQPGHCIEHQGVTIDGPLGLASRGATQASEMYARNLLNFVALFVREGRLGFDWDDELLAKTRWQA
>NZ_CP040434.1|WP_041863077.1|839619_841941_+|DUF1631-domain-containing-protein
MMSVPTPMGSPGRDPAQLQLARDMVLPALCQAFGAALARFDDALFDRAGNAGSSQLLFLDAMRELRRRREEIAAAFAGHLQQAWAALAAGEPLSAEATLSGPAEDGLSLLAEHVLESRLAVRNFATVLLRDFKPVLARLDRRLGRLIGGVELDADHNPISPEHLGVAIHEAFAGCELAPEVHLVLIKLCERDLRAPVGRIYEKLDEQLAAAGVMSQMGAPQRPQPPAPDPRMTGMLDDLVEHRHGAGVDPGFSDDEQAAPAWAQRFAARWSERRGHMQQHLGGDDGAAGEAYAGQQGMLLEALHELLQQTRHVREDATSAAQVAVGQQRPLSQREMMSVLSLLQATPSATLRAAIGEDGESLAQRLKSEVLSSATQLGVDPGQTRLDPQDEDAIDLVGMLFDVMLDERELEGRSRELIGRLVVPFVKVAMLDRRMFVQKTHPARKLLNSLAEACEGNTGESQAERMLMAKVEEIIERLVAEFNENLAIFLTLEEEFREFLVQHRRRVEIAERRAAETQRGQEKLEMARTRAGAELDRRIGDATLPPAIAEFLRQPWQHHLTLALLREGEEGASVAEALSLGDGLLEEVAEARRQIVGKPWLQAWQPVLAKVFASVGVHGDAATGAIDALHDTLQGIAESRPELQRALPELPQVALPAPPVAESPAVELSGQIDADDFDNADADRFRRMEIGNWLDFVDKDGKVQAGKLSWVSPISSRLLFVNRRGVRFCVASPEELAVMVRLGRLRAHVDDGAFDSAMQGVIDRLDPGSTTLH
>NZ_CP040434.1|WP_014646012.1|838706_839288_-|nitroreductase
MPDPAALLALDARRSVPSRQLGEPGPDPATLQRMLASAVRVPDHGKRVPFRFLKIAGDARHTLGDFLAKRSRQRDPHAGEAVFEKDRQRFSHAPLVIVVVASPRPDPKVPEQEQLMTAGCVCFALLQAAQALGFGAQWLTAWMAFDPVVQAHLGLVEGERIAGFIHIGTAKADVPERERPDPATLLQDWTPPA
>NZ_CP040434.1|WP_014646011.1|837774_838710_-|exodeoxyribonuclease-IX
MTLPAPPPSLYLVDASIYVFRAWHSLPDQFQDAQGWPTNAVHGFARFLLDLLERERPRHIAIAFDEALDSGFRHRLYPAYKANRDPAPEALKRQFVHCKALCAALGLAVLAHHDYEADDLIGSALHVHRGSHRGVIISADKDLSQLLLDHDEQWDYARNQRWDVAGVKARHGVHAHQIADYLALCGDAVDNIPGVSGVGSKSAAVLLAHFGSLDALYERLDEVPFLRLRGAAQMAVRLREQREHALLWRQLTTIALDAPLEGSQPGLLRQTADPELLGGLCQTLRFGPMTRRRLFDAAGVPDILPTHSEPA
>NZ_CP040434.1|WP_049408489.1|837223_837778_-|NUDIX-hydrolase
MSQRNTEAPRVVYEGKYQRMLVRGTWEYSERTHAGGLAAIIIAVTPEDKVLFVEQFRVPLQAPTIEMPAGLVGDIHAGESIEVSAVRELEEETGWTADHAEVLMIGPTSSGASSEKIAFVRATGLRRIGDGGGDDSEDITVHEIPRAQAAAWLVQKMGEGYELDAKLWAGLWMIEHHLDGRPRG
>NZ_CP040434.1|WP_046429036.1|846616_847036_-|hypothetical-protein
MSSIATRARTVTWLWSLMLLLGLLVAPLAWMVLALMTGRQVGWMAVVSALELVFMLRLGTLGPGRLRIALVVLGTLLVAAVANWAIASAWMGGSIGLDLWDATTRMGPHLAWTLINLANGAMEWLWLAVAVVVGAWLAR
>NZ_CP040434.1|WP_005415385.1|847158_847710_+|putative-Fe-S-cluster-assembly-protein-SufT
MYSRSSEPVHFERDCEAVMVPQGDTVTLPAGSYGYITQALGGSYSVFVEGNLFRIAGKDGDAIGKEAPAPLELPADATDEQVEQLVWQQLRTCFDPEIPVNIVELGLVYEVEIKHLDEGKREIDVKMTLTAPGCGMGEILVDDVRSKLEMIPTVAEADVDLVFDPPWNQHMMSEAARLETGML
>NZ_CP040434.1|WP_014646022.1|847769_848864_+|branched-chain-amino-acid-aminotransferase
MSQSIPSFAVTRSDHPRSAEERAKILEKPGFGLHFTDHMVEVRWDKDAGWHNASVRAYGPLQLDPAAAVLHYGQEIFEGIKAYRHADGSIWTFRPDANGRRLQRSAQRLALPELPVEIFVESLKQLIAVDSEWVPSADESSLYFRPFMIGDEAFLGVRGAHKAGYYVIASPAGPYFAKGVAPVSIWLSTEYARAAKGGTGAAKCGGNYAASLLPQQKAQAQGCSQVLFLDPVEGKYLEELGGMNVFLVYKDGTLVTPELSGSILEGITRESILQLARDRGMKVEERKVSIDEWKDGVASGAISEVFACGTAAVVTPIGQLKGEGFSVGDINAPAGEVTMSLRKELTDIQYGRLPDRHNWLVKLG
>NZ_CP040434.1|WP_049440131.1|849334_851077_+|S8-family-serine-peptidase
MSQVTQPRVRRVWVVLGASVLSSLLLATPALAGDVQLSGLQSAPTHQRFIVKYRDGSAPVANTTALASSLKSAAAGLASSQGRALGLQQVRKLAVGPTLVRTDRPLDQAESELLMRKLAADPNVEYVEVDQIMRATLTPNDTRFSEQWGFGTSNASINVRPAWDKATGTGVVVAVIDTGITNHPDLNANILPGYDFISDAAMARDGGGRDSNPNDEGDWYGANECGSGIPASNSSWHGTHVAGTVAAVTNNSTGVAGTAFNAKVVPVRVLGKCGGYTSDIADAIVWASGGTVSGVPANANPAEVINMSLGGGGTCSATYQNAINGAVSRGTTVVVAAGNSNTNVSSSVPANCANVIAVAATTSAGARASFSNYGAGIDISGPGQSILSTLNTGTTTPGSASYASYNGTSMAAPHVAGVVALMQSVAPSPLSPAQVESIIKSTARPLPGACSGGCGAGIIDANAAVTAAINGGGNPNPGGNVLQNNVPVTGLGAATGAELNYTVAVPAGSTQLRVAISGGSGDADLYVRQGSAPTDTTYTCRPYLSGNSETCTINSPAAGTWYVRVKAYSTFSGLTLSAQY
>NZ_CP040434.1|WP_010481766.1|851165_851651_-|asparaginase
MEELLVVTTGGTIDKIYFDDKSDYQIGDPQIGMILRELGVTFRFNVIPILRKDSLHINDEDRELIRATIAAQPTRHVLVTHGTDSMVQTGKVLATIPDKTIVMTGALSPARFRGSDAEFNIGCAIGAVQSLPSGVYIAMNGRIFDPQHVRKNVAANRFESV
>NZ_CP040434.1|WP_014646024.1|851730_852066_-|DUF2069-domain-containing-protein
MNRAPRTVLLLALMGLAALFAGWFINDRHWLATQLVFTAPPLALAIAVRLGWRKAGFWASVLALGWFSHGVMSAWSHPETRWLALIEIALALLVIFSASLPGLRARFGKRR
>NZ_CP040434.1|WP_069118531.1|852062_852656_-|NAD(P)H:quinone-oxidoreductase
MGEILVLYYSRGGSVARLARQIARGIGEVPGMTARLRTVPPVAAVTQTAQPPVPDDGAPYVSVQDLVDCQGLLLGSPTRFGNMAAPVKHFLDGLGAEWVNGTLSGKPAGVFTSTASMHGGQESTLLSMQVPLLHHGCVIVGIPFTEPALSHTISGGTPYGASHVAGAADDPQPTDDEAVLARALGRRVADIAQRLAR
>NZ_CP040434.1|WP_032956948.1|852733_854008_+|YihY-family-inner-membrane-protein
MEPLDTLNLWMERARDRARAISFGRFLWHRFLDDRLFQAAAALAYTTVFALVPLAIVVFGVLSAFPVFDRWSDQLSDYVFSNFVPSAARAAEGYLRQFSASAGQLTAAGFIALVASLLITLNSVEETFNQIWRVGSTRPKLTRFLVYWTVLTLGAMLAAASLAVSARVFAMPLFGTQEGRWLAELALRLAPILIEFVCITLMFRVVPHHTVKWRHAVPGAILAAVILELVKWGIGAYLGSFQSYQKLYGTVAFVPILLLWIYLCWVAVLLGASLASSMAAFRYQPVELRLPQGYEFYGLLRLLGRFQHARAKGKGLADDEILRLEPMLTDSLLQDLICNLQEIDLLRRDERGEWLLSRDLDQVSLADLYECTQLRIPVAEQHLPYRDDSLGRAALAALDDLRLPLRERLKRKVSDIYTDSGDMP
>NZ_CP040434.1|WP_014646027.1|854004_854580_+|TlpA-family-protein-disulfide-reductase
MTRKTPLPLLLPLTLLLALAACKPAQEPTPASSQPPAQAPTPTTPAPVDETPAERTTAEFPTLKMKAVDGSDYDLAAHRGKWVVVNFWATWCAPCRKEMPELSALHAMRSNIEVVGLAYEDIEVPEMQSFLTKHPVTYPIVIVDPFDPPADFATPRGLPLTHLLDPQGKLAHTFLGPVTAADIEKQIAAAK
>NZ_CP040434.1|WP_049406807.1|855072_855855_-|polyphosphate-kinase-2
MAKLKRKDYDELLLPLQLELTAMARWVQLSGQRLLVLFEGRDTAGKGGAIQAISQHLNPRQCRVVALPKPTDREATQWYFQRYASHLPAAGEIVLMDRSWYNRAGVERVMGYCSETEYQQFLRQAPVFEQLLVDDGILLFKYWLCVDQEQQEKRFAERHLDPLKGWKLSPVDLKSRSKYSAYTEAREAMLRATHREAAPWTLVDFNDQRLGRLTLVRNLLDRLPDTRVDAPLPELPKLKGKLHREHYDVLKPIEDFPVEE

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Crispr_ID: NZ_CP040434_6

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP040434_6

1669416-1669509

Orphan

Consensus_repeat	Method
GTGCCAACCAAGGTTGGCACCTACCG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP040434_6

>merge|NZ_CP040434|6|1669416-1669509|CRISPRCasFinder
GTGCCAACCAAGGTTGGCACCTACCGGAAGACGTGCCTTGGTAGAGGCCGACCTTGGTCGGCGCTTTTGTGCCAACCAAGGTTGGCACCTACCG

>NZ_CP040434|6|5|1669416-1669509|CRISPRCasFinder
GTGCCAACCAAGGTTGGCACCTACCG	GAAGACGTGCCTTGGTAGAGGCCGACCTTGGTCGGCGCTTTT
GTGCCAACCAAGGTTGGCACCTACCG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP040434.1\|WP_136191670.1\|1676237_1677752_+\|glucose-6-phosphate-isomerase	unknown	unknown	gnl\|CDD\|234679
NZ_CP040434.1\|WP_005409051.1\|1667210_1667771_-\|glycine-cleavage-system-protein-R	unknown	unknown	gnl\|CDD\|225337
NZ_CP040434.1\|WP_005409054.1\|1669563_1669887_-\|ferredoxin-family-protein	unknown	unknown	gnl\|CDD\|378771
NZ_CP040434.1\|WP_111205691.1\|1662129_1663056_-\|alpha/beta-fold-hydrolase	unknown	unknown	gnl\|CDD\|227099
NZ_CP040434.1\|WP_014646743.1\|1666639_1667119_-\|peroxiredoxin	unknown	unknown	gnl\|CDD\|224146
NZ_CP040434.1\|WP_014646741.1\|1664651_1665158_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040434.1\|WP_032957720.1\|1663970_1664639_-\|DUF1275-domain-containing-protein	unknown	unknown	gnl\|CDD\|377734
NZ_CP040434.1\|WP_012510702.1\|1677913_1678483_-\|response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|226933
NZ_CP040434.1\|WP_111205692.1\|1668860_1669376_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|225854
NZ_CP040434.1\|WP_111205690.1\|1660111_1661032_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|176122
NZ_CP040434.1\|WP_032960817.1\|1678479_1679706_-\|HAMP-domain-containing-histidine-kinase	unknown	unknown	gnl\|CDD\|223715
NZ_CP040434.1\|WP_014646744.1\|1667934_1668828_+\|4-hydroxy-tetrahydrodipicolinate-synthase	unknown	unknown	gnl\|CDD\|235107
NZ_CP040434.1\|WP_014646749.1\|1674047_1674863_+\|3-methyl-2-oxobutanoate-hydroxymethyltransferase	unknown	unknown	gnl\|CDD\|234723
NZ_CP040434.1\|WP_154344202.1\|1665154_1666555_-\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|224787
NZ_CP040434.1\|WP_032960824.1\|1673527_1674013_+\|2-amino-4-hydroxy-6--hydroxymethyldihydropteridine-diphosphokinase	unknown	unknown	gnl\|CDD\|223872
NZ_CP040434.1\|WP_046429932.1\|1663052_1663862_-\|bifunctional-hydroxymethylpyrimidine-kinase/phosphomethylpyrimidine-kinase	unknown	unknown	gnl\|CDD\|180561
NZ_CP040434.1\|WP_111205693.1\|1670067_1671492_+\|sugar-porter-family-MFS-transporter	unknown	unknown	gnl\|CDD\|340917
NZ_CP040434.1\|WP_111205694.1\|1674859_1675699_+\|pantoate--beta-alanine-ligase	unknown	unknown	gnl\|CDD\|234741
NZ_CP040434.1\|WP_014646751.1\|1675860_1676241_+\|aspartate-1-decarboxylase	unknown	unknown	gnl\|CDD\|180090
NZ_CP040434.1\|WP_032960826.1\|1672144_1673524_+\|polynucleotide-adenylyltransferase-PcnB	unknown	unknown	gnl\|CDD\|236939

Protein	Function_ID	Function_description	E-value
NZ_CP040434.1\|WP_136191670.1\|1676237_1677752_+\|glucose-6-phosphate-isomerase	gnl\|CDD\|234679	PRK00179, pgi, glucose-6-phosphate isomerase; Reviewed.	0
NZ_CP040434.1\|WP_014646749.1\|1674047_1674863_+\|3-methyl-2-oxobutanoate-hydroxymethyltransferase	gnl\|CDD\|234723	PRK00311, panB, 3-methyl-2-oxobutanoate hydroxymethyltransferase; Reviewed.	7.76327e-146
NZ_CP040434.1\|WP_005409054.1\|1669563_1669887_-\|ferredoxin-family-protein	gnl\|CDD\|378771	pfam11953, DUF3470, Domain of unknown function (DUF3470). This presumed domain is functionally uncharacterized. This domain is found in bacteria. This domain is about 50 amino acids in length. This domain is found associated with pfam00037. This domain has a single completely conserved residue N that may be functionally important.	7.04517e-20
NZ_CP040434.1\|WP_111205691.1\|1662129_1663056_-\|alpha/beta-fold-hydrolase	gnl\|CDD\|227099	COG4757, COG4757, Predicted alpha/beta hydrolase [General function prediction only].	3.49137e-15
NZ_CP040434.1\|WP_014646743.1\|1666639_1667119_-\|peroxiredoxin	gnl\|CDD\|224146	COG1225, Bcp, Peroxiredoxin [Posttranslational modification, protein turnover, chaperones].	7.79932e-70
NZ_CP040434.1\|WP_005409051.1\|1667210_1667771_-\|glycine-cleavage-system-protein-R	gnl\|CDD\|225337	COG2716, GcvR, Glycine cleavage system regulatory protein [Amino acid transport and metabolism].	3.86026e-74
NZ_CP040434.1\|WP_032957720.1\|1663970_1664639_-\|DUF1275-domain-containing-protein	gnl\|CDD\|377734	pfam06912, DUF1275, Protein of unknown function (DUF1275). This family consists of several hypothetical bacterial proteins of around 200 residues in length. The function of this family is unknown although most members have 6 TM regions, and may be putative permeases.	2.65145e-35
NZ_CP040434.1\|WP_012510702.1\|1677913_1678483_-\|response-regulator-transcription-factor	gnl\|CDD\|226933	COG4567, COG4567, Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain [Signal transduction mechanisms / Transcription].	3.5242e-77
NZ_CP040434.1\|WP_111205692.1\|1668860_1669376_+\|hypothetical-protein	gnl\|CDD\|225854	COG3317, NlpB, Uncharacterized lipoprotein [Cell envelope biogenesis, outer membrane].	0.00378326
NZ_CP040434.1\|WP_111205693.1\|1670067_1671492_+\|sugar-porter-family-MFS-transporter	gnl\|CDD\|340917	cd17359, MFS_XylE_like, D-xylose-proton symporter and similar transporters of the Major Facilitator Superfamily. This subfamily includes bacterial transporters such as D-xylose-proton symporter (XylE or XylT), arabinose-proton symporter (AraE), galactose-proton symporter (GalP), major myo-inositol transporter IolT, glucose transport protein, putative metabolite transport proteins YfiG, YncC, and YwtG, and similar proteins. The symporters XylE, AraE, and GalP facilitate the uptake of D-xylose, arabinose, and galactose, respectively, across the boundary membrane with the concomitant transport of protons into the cell. IolT is involved in polyol metabolism and myo-inositol degradation into acetyl-CoA. The XylE-like subfamily belongs to the Glucose transporter -like (GLUT-like) family of the Major Facilitator Superfamily (MFS) of membrane transport proteins. MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	8.75786e-156
NZ_CP040434.1\|WP_032960817.1\|1678479_1679706_-\|HAMP-domain-containing-histidine-kinase	gnl\|CDD\|223715	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms].	1.00653e-18
NZ_CP040434.1\|WP_014646744.1\|1667934_1668828_+\|4-hydroxy-tetrahydrodipicolinate-synthase	gnl\|CDD\|235107	PRK03170, PRK03170, dihydrodipicolinate synthase; Provisional.	8.92392e-133
NZ_CP040434.1\|WP_154344202.1\|1665154_1666555_-\|AAA-family-ATPase	gnl\|CDD\|224787	COG1875, COG1875, NYN ribonuclease and ATPase of PhoH family domains [General function prediction only].	0
NZ_CP040434.1\|WP_032960824.1\|1673527_1674013_+\|2-amino-4-hydroxy-6--hydroxymethyldihydropteridine-diphosphokinase	gnl\|CDD\|223872	COG0801, FolK, 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase [Coenzyme metabolism].	3.97129e-64
NZ_CP040434.1\|WP_046429932.1\|1663052_1663862_-\|bifunctional-hydroxymethylpyrimidine-kinase/phosphomethylpyrimidine-kinase	gnl\|CDD\|180561	PRK06427, PRK06427, bifunctional hydroxy-methylpyrimidine kinase/ hydroxy-phosphomethylpyrimidine kinase; Reviewed.	7.63905e-131
NZ_CP040434.1\|WP_111205690.1\|1660111_1661032_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|176122	cd08431, PBP2_HupR, The C-terminal substrate binding domain of LysR-type transcriptional regulator, HupR, which regulates expression of the heme uptake receptor HupA; contains the type 2 periplasmic binding fold. HupR, a member of the LysR family, activates hupA transcription under low-iron conditions in the presence of hemin. The expression of many iron-uptake genes, such as hupA, is regulated at the transcriptional level by iron and an iron-binding repressor protein called Fur (ferric uptake regulation). Under iron-abundant conditions with heme, the active Fur repressor protein represses transcription of the iron-uptake gene hupA, and prevents transcriptional activation via HupR. Under low-iron conditions with heme, the Fur repressor is inactive and transcription of the hupA is allowed. This substrate-binding domain shows significant homology to the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	1.54617e-66
NZ_CP040434.1\|WP_111205694.1\|1674859_1675699_+\|pantoate--beta-alanine-ligase	gnl\|CDD\|234741	PRK00380, panC, pantoate--beta-alanine ligase; Reviewed.	4.2846e-151
NZ_CP040434.1\|WP_014646751.1\|1675860_1676241_+\|aspartate-1-decarboxylase	gnl\|CDD\|180090	PRK05449, PRK05449, aspartate alpha-decarboxylase; Provisional.	4.82894e-72
NZ_CP040434.1\|WP_032960826.1\|1672144_1673524_+\|polynucleotide-adenylyltransferase-PcnB	gnl\|CDD\|236939	PRK11623, pcnB, poly(A) polymerase I; Provisional.	1.62116e-170

>NZ_CP040434.1|WP_111205692.1|1668860_1669376_+|hypothetical-protein
MRQSVSTVRVLSYALFAVAVAAGTTGCFKRGVKGDYALAPEMRPLEVPPDLNLPNATTDNKVPTLASATKPAAPVAAAPAVGNTGFTIAGGKDEAFAKVGTALEGVEGVTIASRAQLLGSYDVAYEGSNFLVRVVAVDAGAYISAVDPRGLPATAEAPVKLIATLKAKLAQ
>NZ_CP040434.1|WP_014646744.1|1667934_1668828_+|4-hydroxy-tetrahydrodipicolinate-synthase
MSLSGLITALATPFRADGALDPDGWQRLLHLQLEGGVHGVVVAGSTGEAATLTDAEYDQLLASAVERIGGRIPVMAGTGLSGTAKTIEQTRRAAALGASHALVVTPPYVRPTQAGLIAHYRAVADQGGLPVVLYNVPGRTGCDMQPETVAELASHPNIVGIKEAVGDTGRVQALLALRSPKFAVLSGDDGTAARSIRAGIDGLISVGSNVLPGAYRRMCELAAAHDHEATESWDARLHPFHDFCGVEPNPIPVKALLRRIGIGHDLRLPLLPLSAAHHPAADHLAGDIAALEALSSH
>NZ_CP040434.1|WP_005409051.1|1667210_1667771_-|glycine-cleavage-system-protein-R
MTDTTPRPAPSENHLLINAYTTHPESPLLSVTRRIADSGCNLVDARLATVGRDVSVTALATGSWDSVAKLEAMLTRLEREEGLKLVWYRTAAKQAQSNLLPYIVEVIAADKPGILFQLADFFDRQGITIENLQSTRYRAMQTGAEMFSAQVTIGVPANMHIAALRDDFLEFCDHLNLDAIMDPMKF
>NZ_CP040434.1|WP_014646743.1|1666639_1667119_-|peroxiredoxin
MNNGDTLDSTTLSLPLALSGGDQATLGDYAGQWLVLYFYPKDSTPGCTTEGIDFNALLPKFKKAGAVVLGVSRDSVKSHDNFCARQGFGFPLVSDGDEALCSAFDVIKMKNMYGKQVRGIERSTFLISPDSRIVQSWRKVKVAGHADAVLAELKASQSK
>NZ_CP040434.1|WP_154344202.1|1665154_1666555_-|AAA-family-ATPase
MTRGKRIYVLDTNVLMHDPTALFKFEEHDVYLPMQVIEELDNGKKGTSEASRNARQVSRFLNELVQASGLDNLADGIPLQRPNGLQLRGKQSAGKLRFQTSHFDAGKSFGKVIPDNAILGAILALKEETPDLPVVFVSKDINLRIKAAIAGIVSEDYENDRALDDFSLLYTGATELPEDFWKRHGDDLRSWSDKGRTHYEIQAQDGEEWYPNQYVYLPGEDEVELRVSRVVGDGKVVLSLVDDFRHGSHAVWGISARKREQNFALNALMDPEIDFVTLLGTAGTGKTLLALAAGLAQTMDQQRYREIIMTRATVSVGEDIGFLPGTEEEKMTPWMGALTDNLEVLTHNQEGGTWGRQATNDLLASRIKIRSMNFMRGRTFLSRYLILDEAQNLTPKQMKTLITRAGPGTKIVCLGNVEQIDTPYLTETTSGLTYAVDRFKNWPHSAHITLRRGERSRLADYASEVL
>NZ_CP040434.1|WP_014646741.1|1664651_1665158_-|hypothetical-protein
MNRRTRLLLPTAAITLAAVLGACTTTRGPASVPTAERTGQSWVVTRPIIAAQVLDTCSRPSPGREAGRVSGYWAPSRQQIDQLEANLSSLEAQVPKVLDFDRQYVGIESAGRRLIYINAFHLPDDSGINPAREAIRVCDGGAQFWGAVFDPASNTFSELQFNGGFGGP
>NZ_CP040434.1|WP_032957720.1|1663970_1664639_-|DUF1275-domain-containing-protein
MGIRLPTWVWIGAVALSCVAGMVNVVGFLGFEHQAVSHMTGSTSQLGMALAQGDWRAVGHLWGLLIAFSLGAMLSGLLIQDSTLQLGRRYGVALALESALLLVAIPLFERHQIWGALAAAMACGLQNAMATTFSGAVVRTTHLSGMFTDLGIGLGHLLRGLPLQVRRLTLSGLIISGFLAGGILGAWLFVRWQYDALLAPALLTGLTGLGYVLYQQWARWRH
>NZ_CP040434.1|WP_046429932.1|1663052_1663862_-|bifunctional-hydroxymethylpyrimidine-kinase/phosphomethylpyrimidine-kinase
MSPTTPVSALTIAGSDSGGGAGIQADLKAFAAHRVHGLSAIAALTAQNTRGVIAVHVPPIDFLRAQLDACFDDFDIHAVKLGMLANAEVINAVADALERHRPPHVVLDPVMVATSGARLLEDSALQAMRERLIPLATLITPNTPEAELLVGRKIGNGDDAERAASALLDLGAGAVLLKGGHLQEGNRVIDRYFDGVSSEEFIHARLPLDAHGTGCTLASAIAAQLCNGLSLANACEAGIDYVARGLQQGYAPGRSEVLVLDHFGAAPHA
>NZ_CP040434.1|WP_111205691.1|1662129_1663056_-|alpha/beta-fold-hydrolase
MSLTPDVLAVQCADGHRYEVIACVPAQPIARLLWLPALGVAARHYLPLAQALAAKGVAVYLHEWRGNGSSSLRPSRTQDWGYREVLEQDLPTSQAVLVAADDEAGALPWIIGGHSLGGQLACVHAGRNPQHFNRLWLAASGSPFWRGFPPPRGWLLPLVYRFLPWIAQRQGVLHGRRLGFGGTEARGLIADWARVGLNNHYASAGMDEDLDAQMARVHGSAQAVLMEHDWLAPTGSMQTLLAKLPNVDAQLRVLSAQELGTRADHFAWLKAPDAVADRFFIQLDENFHKTVDGTRRHPHNSAPVAGRP
>NZ_CP040434.1|WP_111205690.1|1660111_1661032_+|LysR-family-transcriptional-regulator
MLKLSLDALQILDAIDRRGSFAGAGKALHKVPSTISYTVAKLEEDLGVQLFDRVGPRAEPTEAGRALLDEGRHLLRAARELELRVRRVASGWETELTLAVDSVFPTWLLGPDIAAFREAEAPTRLRLIGEALSGTWEALLDRRADLLVGAPGEGPSGGGYVVEPLGTVEFVFAVAPDHPLAKVPGVLGREQLVEHCAIAVSDSARRSLPRTVGLLMGQEMLTVPDMASKLKLQCEGVGFGFLPEPCARAAVARGQLVIREVEEHKPEETFWLAWRTGEDGAALRWWRERLRRPELLSQWWQAMAKG
>NZ_CP040434.1|WP_005409054.1|1669563_1669887_-|ferredoxin-family-protein
MPFVVTENCIKCKHTDCVEVCPVDCFHEGPNFLVIDPDECIDCTLCEPECPVNAIFPEDDVPAGQEGFVALNAELAKEWPVLTVRKDPPADAGEWDGKPDKLKLLER
>NZ_CP040434.1|WP_111205693.1|1670067_1671492_+|sugar-porter-family-MFS-transporter
MSQAPSRTASHGGENTAFIVLISCVATLGGFLFGFDSGVINGTVDGLRQAFNSSEAALGFEVASMLLGCAVGAFLAGWLGDRLGRRGVLIVSALMFLVSALGAGAAHASWLFIAARVLGGFAVGAASVMSPAYIAEVASARYRGRLATVQQMAIICGLFAAFLSNYLLARAAGASTEPLWLGHEAWRWMFWMQALPSALFLLLLLVIPESPRFLVLKGRQGQARAVLSRLYGEAAARAKQAEIEASLEQDQHKPRFGDLRSRATGRLRPILWVGIGLAMFQQLVGINVVFYYGAVLWQAVGFSESDALLINVLSGALSIGACLLTVLLIDRIGRKPLLWVGSVGMSVALVLMVVAFASGSLAGGRLQLSDGMGRLALVAANVYVVFFNMSWGPVMWVMLGEMFPNQIRGPALAVAGAAQWTSNFAITVTFPMLLAGIGLAGAYGIYAVAAILSIVFVVRYVRETKGKELEQMEG
>NZ_CP040434.1|WP_032960826.1|1672144_1673524_+|polynucleotide-adenylyltransferase-PcnB
MGNPETSTGSANIISSATSPFSLRVIPRDQHTISRKDISPNALRVLYRLRDAGFGAYLVGGAVRDLLVNGQPKDFDVATDATPEQVKQLFRNCRLIGRRFRLAHVVFGREIIEVATFRANSDDGSGDREMENGMLVRDNVYGTIEDDAIRRDFTCNALYYAIEDFSVRDYTGGFEDVQARLMKLIGDPVQRYQEDPVRMLRAVRLAAKLGFQIEEGTAAPIPHLAGLLNEAAPARLFEEVLKLFLSGHGVASFEGLERYGLLDVLFPESAKALKANRTGALRRMLVEGLANTDARVANDEPVSPAFLFALLLWPAFCRAQATLLKQGVAPEEAQRRAADRVTVQQLSTIALPRRFSLPMQEIWLLQSRFSSRQRKRVFRTLTHPRFRAAFDFLSLRQVASSEHAADVEFWREAQAQSGRELESSLDAMHSEDGDDESGAPRKRRRRRRRPGAAAGAAGE
>NZ_CP040434.1|WP_032960824.1|1673527_1674013_+|2-amino-4-hydroxy-6--hydroxymethyldihydropteridine-diphosphokinase
MTLAWIGLGANLGDAAATVGAAIAALDGLPGTRLRQASRLYATPAWGNEDQPPFVNAVASVETTLPADELLQAMLALEQRFGRTRDPAVHWGPRALDLDLLLYGAQALDQPGLKVPHPYLHERAFVLVPLAEIAPELTIPGHGRVQDAVMRVDACGIAPIG
>NZ_CP040434.1|WP_014646749.1|1674047_1674863_+|3-methyl-2-oxobutanoate-hydroxymethyltransferase
MSTHADSKPWTVPALAEAKRNGQKLVMLTAYDAGFARTFDANGVDLILIGDSLGMVVQGHDSTLPVTVADMVYHTRAVARVLQRALLVADLPFGADATPERALDASLQLLQAGAEMVKIEGAGFKVDIIRYLVEREIPVCAHLGLTPQSVLRLGGFKIQGRGDAARQLVEDARAVAAAGASIMVLECVPTPVAAEVTAAVDVPTIGIGAGPQCDGQVLVLHDFLGLDSGHRRPKFVKDFLAEGGSVAGATRAFADAVRDGSFPDEQHAYAQ
>NZ_CP040434.1|WP_111205694.1|1674859_1675699_+|pantoate--beta-alanine-ligase
MIQTFNELGALREQIAQWKREGLRVALVPTMGNLHGGHHSLVTLAHQYADKVVASIFVNPTQFGPNEDFSRYPRTPEADVAGLEQVGCDAVWLPSVETMYPLGVDRTTRMHAPGVSEVLEGASRPGHFDGVCTVVARLFLQVQPDVAVFGRKDYQQLAVIRQMVAELSFPIQIVGAEIVRDEDGLAKSSRNQYLSDEQRPVATTIHRTLLGMREGYVAGQARDRIEADATAALQAAGFQVDYAVLRTPELAEPTFDGGGRVALIAARLGTTRLIDNLEF
>NZ_CP040434.1|WP_014646751.1|1675860_1676241_+|aspartate-1-decarboxylase
MHLSLLKTKIHRATVTHSELNYEGSIAIDDNLLAATGIREFEQVHIWDVTNGARFSTYAIRAEAGSGVVSLNGGAARHVQVGDIIIIAAFASMTEQEADSFRPKLVYVDGNNQITHTNDTIPTQAA
>NZ_CP040434.1|WP_136191670.1|1676237_1677752_+|glucose-6-phosphate-isomerase
MTTNNGFDSLHSHAQRLKGASIPSLLAAEPGRVQELALRVGPLYVNFARQKYDAAALQALLALAAERDVGGAITRLFRGEQVNLTEGRAALHTALRGDVVDAPVAAEAYGTARAIRQRMGVLVRALEDSGVTDVVSVGIGGSDLGPRLVADALRPVSGARLRVHFVSNVDGAAMQRTLATLDPAKTAGILISKTFGTQETLLNGQILHDWLGGSERLYAVSANPDRAAKAFAIAADRVLPMWDWVGGRYSLWSAVGFPIALAIGFERFEQLLEGAAQMDAHALDAPLERNLPVLHGLTDIWNRNLLGHATHAVMTYDQRLALLPAYLQQLVMESLGKRVQRDGAPVTTDTVPVWWGGAGTDVQHSFFQALHQGTSVVPADFIGCVHNDDPYTTNHQALLANLLAQTEALANGQSSDDPHRDYPGGRPSTLILLDALTPQALGALIAMYEHAVYVQSVIWNINAFDQFGVELGKQLASGLLPALQGEDVAVADPMTREILAQLKR
>NZ_CP040434.1|WP_012510702.1|1677913_1678483_-|response-regulator-transcription-factor
MSLHHSTLGLLVDDDELYLRTLQRSLARKGLETQTAQDAASALALARQHPPAFALIDLKLGSDSGLALIQPLRALRADMRILLVTGYASIATAVEAIKLGADDYLPKPATVPMILRALGEEDDGPADDGEMEVPDAMTPISRLQWEHIQQAMHETGGNVSAAARLLGMHRRSLQRKLAKRPSPERDPSR
>NZ_CP040434.1|WP_032960817.1|1678479_1679706_-|HAMP-domain-containing-histidine-kinase
MTGPDAPFLRTLCSLRWLAVGGQAATILVATWVLGLPLPQLPLWAGVAVLALFNIYTQLRPDAADTAPLTAFGHILVDVIILTWMVGWSGGMANPFSSLFLILIALAAFALPLRWALAVALACLLGYAASGIFGQPLPDGYFRAQDLNRWGVVANFLISAAVVLAFSTRLALALRERELELSALRERFARNEGIVALATHAASVAHELNTPLATMTLLADDVAERSEEPEVREDMETLRELLVQCRERVLALAAPASADAPGRSHSSAQQVLEQWRLVRPTIDLHRNDDAPLRLPLDPGVGHLLMVLLNNAADAGEKAGRPRVDLDLRIEGDDLIGEVRDYGHGFDARAAVLPGKLFGSSKSEGMGVGLALSHATIERLDGEMWMRPAQGAGSRVGFRLPLAPREDTP

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Crispr_ID: NZ_CP040434_7

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP040434_7

1701517-1701619

Orphan

Consensus_repeat	Method
GGTGGGTGCCAACCTTGGTTGGCAC	CRISPRCasFinder

1 spacers

csa3

The CRISPR arrays of NZ_CP040434_7

>merge|NZ_CP040434|7|1701517-1701619|CRISPRCasFinder
GGTGGGTGCCAACCTTGGTTGGCACTCTCCACCCGCGCCGGTAGGTGCCAACCTTGGCTGGCACGCTCGATCCGCCCCGGTAGGTGCCAACCTTGGTTGGCAC

>NZ_CP040434|7|6|1701517-1701619|CRISPRCasFinder
GGTGGGTGCCAACCTTGGTTGGCAC	TCTCCACCCGCGCCGGTAGGTGCCAACCTTGGCTGGCACGCTCGATCCGCCCC
GGTAGGTGCCAACCTTGGTTGGCAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP040434.1\|WP_014646771.1\|1701185_1701485_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|180871
NZ_CP040434.1\|WP_111205703.1\|1701701_1703591_-\|molecular-chaperone-HtpG	unknown	unknown	gnl\|CDD\|235366
NZ_CP040434.1\|WP_046430010.1\|1709311_1709605_-\|starvation-inducible-protein	unknown	unknown	gnl\|CDD\|183165
NZ_CP040434.1\|WP_005409079.1\|1694130_1694916_+\|succinate-dehydrogenase-iron-sulfur-subunit	unknown	unknown	gnl\|CDD\|235652
NZ_CP040434.1\|WP_014646773.1\|1704410_1704989_+\|16S-rRNA-(guanine(966)-N(2))-methyltransferase-RsmD	unknown	unknown	gnl\|CDD\|223813
NZ_CP040434.1\|WP_005409080.1\|1694991_1695240_+\|succinate-dehydrogenase-assembly-factor-2	unknown	unknown	gnl\|CDD\|225489
NZ_CP040434.1\|WP_049442323.1\|1698242_1698512_-\|oxidative-damage-protection-protein	unknown	unknown	gnl\|CDD\|180059
NZ_CP040434.1\|WP_111205700.1\|1695190_1695640_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040434.1\|WP_014036814.1\|1705015_1705525_+\|pantetheine-phosphate-adenylyltransferase	unknown	unknown	gnl\|CDD\|234674
NZ_CP040434.1\|WP_032958619.1\|1695663_1696905_+\|lipoprotein-releasing-ABC-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|274034
NZ_CP040434.1\|WP_019338337.1\|1708338_1709226_+\|MBL-fold-metallo-hydrolase	unknown	unknown	gnl\|CDD\|293839
NZ_CP040434.1\|WP_004153175.1\|1706209_1706491_+\|YfhL-family-4Fe-4S-dicluster-ferredoxin	unknown	unknown	gnl\|CDD\|224066
NZ_CP040434.1\|WP_111205702.1\|1699724_1701056_-\|signal-recognition-particle-docking-protein-FtsY	unknown	unknown	gnl\|CDD\|236686
NZ_CP040434.1\|WP_005409092.1\|1705585_1706077_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040434.1\|WP_111206157.1\|1710068_1710548_+\|SRPBCC-family-protein	unknown	unknown	gnl\|CDD\|176905
NZ_CP040434.1\|WP_005409083.1\|1696897_1697611_+\|lipoprotein-releasing-ABC-transporter-ATP-binding-protein-LolD	unknown	unknown	gnl\|CDD\|131266
NZ_CP040434.1\|WP_014646774.1\|1706487_1708218_+\|gamma-glutamyltransferase	unknown	unknown	gnl\|CDD\|223482
NZ_CP040434.1\|WP_111205701.1\|1698517_1699642_-\|A/G-specific-adenine-glycosylase	unknown	unknown	gnl\|CDD\|224115
NZ_CP040434.1\|WP_032959152.1\|1709728_1710088_+\|helix-turn-helix-transcriptional-regulator	csa3	COG0640_csa3_CAS-I-A	gnl\|CDD\|223713
NZ_CP040434.1\|WP_032958624.1\|1697718_1698168_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP040434.1\|WP_014646771.1\|1701185_1701485_+\|hypothetical-protein	gnl\|CDD\|180871	PRK07191, flgK, flagellar hook-associated protein FlgK; Validated.	0.00108039
NZ_CP040434.1\|WP_111205703.1\|1701701_1703591_-\|molecular-chaperone-HtpG	gnl\|CDD\|235366	PRK05218, PRK05218, heat shock protein 90; Provisional.	0
NZ_CP040434.1\|WP_046430010.1\|1709311_1709605_-\|starvation-inducible-protein	gnl\|CDD\|183165	PRK11505, PRK11505, phosphate starvation-inducible protein PsiF.	1.51279e-15
NZ_CP040434.1\|WP_005409079.1\|1694130_1694916_+\|succinate-dehydrogenase-iron-sulfur-subunit	gnl\|CDD\|235652	PRK05950, sdhB, succinate dehydrogenase iron-sulfur subunit; Reviewed.	4.69825e-173
NZ_CP040434.1\|WP_005409080.1\|1694991_1695240_+\|succinate-dehydrogenase-assembly-factor-2	gnl\|CDD\|225489	COG2938, COG2938, Uncharacterized conserved protein [Function unknown].	4.27169e-25
NZ_CP040434.1\|WP_049442323.1\|1698242_1698512_-\|oxidative-damage-protection-protein	gnl\|CDD\|180059	PRK05408, PRK05408, oxidative damage protection protein; Provisional.	2.63837e-53
NZ_CP040434.1\|WP_014036814.1\|1705015_1705525_+\|pantetheine-phosphate-adenylyltransferase	gnl\|CDD\|234674	PRK00168, coaD, phosphopantetheine adenylyltransferase; Provisional.	7.42066e-97
NZ_CP040434.1\|WP_032958619.1\|1695663_1696905_+\|lipoprotein-releasing-ABC-transporter-permease-subunit	gnl\|CDD\|274034	TIGR02212, releasing_system_transmembrane_protein_lolC., lipoprotein releasing system, transmembrane protein, LolC/E family. This model describes the LolC protein, and its paralog LolE found in some species. These proteins are homologous to permease proteins of ABC transporters. In some species, two paralogs occur, designated LolC and LolE. In others, a single form is found and tends to be designated LolC. [Protein fate, Protein and peptide secretion and trafficking].	1.81992e-156
NZ_CP040434.1\|WP_019338337.1\|1708338_1709226_+\|MBL-fold-metallo-hydrolase	gnl\|CDD\|293839	cd16281, metallo-hydrolase-like_MBL-fold, uncharacterized subgroup of the MBL-fold_metallo-hydrolase superfamily; MBL-fold metallo hydrolase domain. Members of the MBL-fold metallohydrolase superfamily are mainly hydrolytic enzymes which carry out a variety of biological functions. The class B metal beta-lactamases (MBLs) for which this fold was named perform only a small fraction of the activities included in this superfamily.Activities carried out by superfamily members include class B beta-lactamases, hydroxyacylglutathione hydrolases, AHL (acyl homoserine lactone) lactonases, persulfide dioxygenases, flavodiiron proteins, cleavage and polyadenylation specificity factors such as the Int9 and Int11 subunits of Integrator, Sdsa1-like and AtsA-like arylsulfatases, 5'-exonucleases human SNM1A and yeast Pso2p, ribonuclease J and ribonuclease Z, cyclic nucleotide phosphodiesterases, insecticide hydrolases, and proteins required for natural transformation competence. Classical members of the superfamily are di-, or less commonly mono-, zinc-ion-dependent hydrolases, however the diversity of biological roles is reflected in variations in the active site metallo-chemistry.	1.33586e-132
NZ_CP040434.1\|WP_004153175.1\|1706209_1706491_+\|YfhL-family-4Fe-4S-dicluster-ferredoxin	gnl\|CDD\|224066	COG1143, NuoI, Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23 kD subunit (chain I) [Energy production and conversion].	9.80646e-07
NZ_CP040434.1\|WP_111205702.1\|1699724_1701056_-\|signal-recognition-particle-docking-protein-FtsY	gnl\|CDD\|236686	PRK10416, PRK10416, signal recognition particle-docking protein FtsY; Provisional.	3.92473e-173
NZ_CP040434.1\|WP_032959152.1\|1709728_1710088_+\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|223713	COG0640, ArsR, Predicted transcriptional regulators [Transcription].	1.43807e-13
NZ_CP040434.1\|WP_111206157.1\|1710068_1710548_+\|SRPBCC-family-protein	gnl\|CDD\|176905	cd08896, SRPBCC_CalC_Aha1-like_3, Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.	4.28665e-83
NZ_CP040434.1\|WP_005409083.1\|1696897_1697611_+\|lipoprotein-releasing-ABC-transporter-ATP-binding-protein-LolD	gnl\|CDD\|131266	TIGR02211, LolD_lipo_ex, lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina. [Protein fate, Protein and peptide secretion and trafficking].	1.48598e-123
NZ_CP040434.1\|WP_014646774.1\|1706487_1708218_+\|gamma-glutamyltransferase	gnl\|CDD\|223482	COG0405, Ggt, Gamma-glutamyltransferase [Amino acid transport and metabolism].	0
NZ_CP040434.1\|WP_014646773.1\|1704410_1704989_+\|16S-rRNA-(guanine(966)-N(2))-methyltransferase-RsmD	gnl\|CDD\|223813	COG0742, COG0742, N6-adenine-specific methylase [DNA replication, recombination, and repair].	7.32305e-65
NZ_CP040434.1\|WP_111205701.1\|1698517_1699642_-\|A/G-specific-adenine-glycosylase	gnl\|CDD\|224115	COG1194, MutY, A/G-specific DNA glycosylase [DNA replication, recombination, and repair].	1.55493e-137

>NZ_CP040434.1|WP_014646771.1|1701185_1701485_+|hypothetical-protein
MDNVMGIALGGMRASQQGVQVAAHNVANLATPDAQRLQLQRSAAGQGGVQAAVIPVGADAGAPLGDLLAAKAEVVAFAANAAVIRRQDQMLGSLLDRDA
>NZ_CP040434.1|WP_111205702.1|1699724_1701056_-|signal-recognition-particle-docking-protein-FtsY
MLSFFRRKKPQDAPAAEAPKTQHYSAEELAAAFPSAAPVEDKEPAPVAVPAAPAPAEPPPAAVVPVAFEPTPVVPAPAVPAPVVPAPSAPQSAARIDVAPVAAPAIEPAPAPLPQPTPAPVTDDLPAAASIDAVPAPAGKPGWRERLRNSVIARSFGGLFSRNPKLDDDLLDELETALITADVGVGATTDLVEGLRKRMKSREFADANALLAALRAELIAILQPVAKPLVIDRNAKPFVVLTVGVNGVGKTTTIGKLAKRFKDDGHSLMLAAGDTFRAAAVAQLQAWGERNGVAVVAQGQNADAASVAFDALQAGKARGTSVLIADTAGRLHTQSGLMNELGKIRRVLGKIDPTAPHEVLMVIDGTTGQNALSQLRQFNAAVNVTGLVVTKLDGTAKGGVVFALAREFGIPIRFAGIGERPEDLRVFDPEAFVDALLPEALGA
>NZ_CP040434.1|WP_111205701.1|1698517_1699642_-|A/G-specific-adenine-glycosylase
MPRQPHASAETAERDGFVARLLHWFDDHGRHDLPWQHPRSPYRVWLSEIMLQQTQVATVIPYFQRFLQHFPTLPDLAAASNDAVMAQWAGLGYYARARNLHAAAKRCVELHDGDLPRDFDALHALPGIGRSTAGAILSQAWNDPFAILDGNVKRVLSRYHGIDGFPGLPAIEKQLWSIAEAHVAQVPAGRMADYTQAQMDLGATVCSRAKPACVICPLQDACVARREGRTAELPTPKPSRTLPEREAVALLLRDAQQRVLLQKRPDTGIWAQLWTLPQADAGSVLQDWFDAHVEGSLEDAEELPVLQHTFSHYKLHLQVLSRQVHGLRVEEPTLRWVANDELPALGLPAPIRKLLDGATIKAPKRNSKKPRNHE
>NZ_CP040434.1|WP_049442323.1|1698242_1698512_-|oxidative-damage-protection-protein
MSRTVFCQYEQRDAEGLDFVPYPGELGQRIFSNIGKQAWAAWLAHQTMLINENRLSPRTPEHRAFLEGELVKFLFEKDAEKPAGFTPEA
>NZ_CP040434.1|WP_032958624.1|1697718_1698168_+|hypothetical-protein
MKTPILIAGLCLALAACATTGRLSSTEKLDLYRAHAGAPQNDMQFFGSLNGWTELGDSALAVWTRPSEAYLLELSGPCPDLSYATAIGLTSSMGRVSSRFDKVLVRDPTGGPRMPCFINSIRKLDVKALRASEQELRQAQVQEREENTK
>NZ_CP040434.1|WP_005409083.1|1696897_1697611_+|lipoprotein-releasing-ABC-transporter-ATP-binding-protein-LolD
MNKVFNRGDEVIRAEALGKTYAEGRMQTPVFDGLDLTVTAGETVAIIGASGAGKSTLLHLLGGLDIPTAGEVYVTGQRMSALSDTARGLLRNQALGFVYQFHHLLPEFTALENVMMPVLLAGTAVAEASSRATTLLEAVGLGHRLDHKPGELSGGERQRAAVARALVNHPACVLGDEPTGNLDDRTAATVFELMLELNRARHTSLVLVTHDRSLARRLDRVLELREGRLHALAHADV
>NZ_CP040434.1|WP_032958619.1|1695663_1696905_+|lipoprotein-releasing-ABC-transporter-permease-subunit
MFKPIPVAIGLRYLRAKRRNGFISFISMASILGIALGVTVLITTLAVMSGFQKEIRSRLLQMTAHTTISRDGEPMPDWMRVVDVARKDPRVAGAAPYIEIQSMISGPRVQGAIIQGIDPALEPKVSVIDKKVTKGSYASLTPGSFNLLLGKELAIWLGVDVGDQVLVTFAEVQGTPAGAVPRMKRFTVSGIFEAGYNEVDRGVGFANMQDLERVLRSDGATGVRLKLHDMDRSLEVGVDLAQSLGGAYRVSDWTQQNANLYHSLRMEKVVMGILLSLIIAMGAFNLVSSQVMLVTDKQADIAILRTLGLTPGGVMQVFMVQGSLIGIFGTLAGLIGGITLTLNLERILGAIESVFNVKLLPEDVYYITGLPTDMQTGDVVAITVVALLMSFLATLYPAWRAARTQPAEALRYE
>NZ_CP040434.1|WP_111205700.1|1695190_1695640_+|hypothetical-protein
MRTRSPSCRRSSPSSLEWRPSRLQAAAQLAVLLAAPWLLRASDLPSRLLMPAVVLAWCVGLAELAWRQRRPRVQVLLPPLPEPIRVAGQDVEAPRLVVRGPWLLLRWHQDQRRRCLLFWPDVLDSGQRRELRLAVAARAVSRQPRTMAP
>NZ_CP040434.1|WP_005409080.1|1694991_1695240_+|succinate-dehydrogenase-assembly-factor-2
MEEDVLLKKLRWRCRRGMRELDQLFGRYLDHEWSTAPTEEREVFLFLLDCEDDKLWRWFMGYEACPHAHAIPLMQKILALKP
>NZ_CP040434.1|WP_005409079.1|1694130_1694916_+|succinate-dehydrogenase-iron-sulfur-subunit
MAEFSLPKNSKITKGKHFPVKNGGKNVRTFKIYRWSPDDDSNPRTDTYEVDLDACGPMVLDALIKIKNEIDPTLTFRRSCREGICGSCAMNIDGTNTLACTRAISDCGKKEVPIYPLPHMNVVKDLVPDLTHFYAQYASIKPWIRTQTPAPPDRERLQSPEDRKKLDGLYECILCACCSTSCPSYWWNGERYLGPAILLQAYRWIIDSRDEDTGARLDDLEDPFKLYRCHTIMNCARTCPKGLNPALAIAEIKKLMMERRA
>NZ_CP040434.1|WP_111205703.1|1701701_1703591_-|molecular-chaperone-HtpG
MTETTQTETLGFQTEVKQLLQLMIHSLYSNKEIFLRELVSNAADAADKLRFEALTQPALLEGDSELRVRVSFDPAAHTITIEDNGIGMSRAEAIAHLGTIAKSGTGDFLRQLSGDQKKDSQLIGQFGVGFYSAFIVADEVEVTSRRAGLAAGEGVRWTSRGEGDFNVATVDKAERGTRIVLHLKDGEHDFADGWRLRSILKKYSDHIGLPIQMPKEGEEGATVELETVNRASALWTRPRTEIGDAEYTEFYKHVAHDHSDPLAWSHNKVEGKLEYTSLLYVPGRAPFDLYHRDAPKGLKLYVQRVFVMDQAEQFLPLYLRFIKGVVDSNDLSLNVSREILQSGPVIDSMKAALTKRSLDMLDKLAADKPEQYATFWKEFGQVLKEGPAEDYNNREKVAGLLRFASTRGDSDAQTVSLADYLGRMTEGQDKIYYLTGESYSQVRNSPHLEVFRKKGVEVLLLTDRIDEWLMGYLTDFDGKGFVDIARGDLDLGALETEADKQEQEAAAKDKQGLVERLKTVLGDDVAEVRVSHRLTDSPAVLAIGEQDLGLQMRQILEASGQKVPDSKPVLEINPGHPLIAKLDAEADGARFDDLGRVLFDQAALAAGDSLKDPGAYVARLNKLLLELSA
>NZ_CP040434.1|WP_014646773.1|1704410_1704989_+|16S-rRNA-(guanine(966)-N(2))-methyltransferase-RsmD
MSGRGGNDGQVRIIGGRWRNTRLPVPTLPGLRPSSDRVRETLFNWLMPKLGGARVLDLFAGSGALGLEAVSRGAAHATLVERDAQLGRNLTAAVARLQASDQITVVQADALRWLQGAQAQQADLVFIDPPFADGLWQDVLAQLPRHLAADAWLYLESPAGHVPVLPPDWLLHREGGTREVRFALYRRATATL
>NZ_CP040434.1|WP_014036814.1|1705015_1705525_+|pantetheine-phosphate-adenylyltransferase
MTVANRRIAVYPGTFDPITNGHIDLVSRAAPLFEKVVVGVAQSPSKGPALPLEQRVQLARGALAHHGNVEVIGFDTLLAHFVRSVQGGVLLRGLRAVSDFEYEFQMASMNRHLIPEVETLFLTPAEQHSFISSSLVREIARLGGDVSGFVPAAVLEALRKVREAKSAQS
>NZ_CP040434.1|WP_005409092.1|1705585_1706077_+|hypothetical-protein
MNTTMRAMLIASLALAFTACKKEEAAPVDEAKQALVAPAKDDDAGWKKYLQEVAIQNMGNITNSPFLYYLSPESDPDFQAKYERQTESATQAVARGVQPGNMLAFGSSASGKMADMIQAVFKDVSPDSMKGVRVVFIGQSADNARVQAAIQPTGAEYIFVEAK
>NZ_CP040434.1|WP_004153175.1|1706209_1706491_+|YfhL-family-4Fe-4S-dicluster-ferredoxin
MSLKINELCVNCDVCEPACPNQAIAMGETIYVIDPARCTECVGHFDEPQCVVVCPVECIDPDPEIVETEDQLLAKLRQLQHDHPELYAEPPSE
>NZ_CP040434.1|WP_014646774.1|1706487_1708218_+|gamma-glutamyltransferase
MKTLIVRPLLLLGLLLSPMAWADSPARADRPDGAAIASGHALATQAGIDILAQGGNAFDAAVAVSSTLAVVEPISSGLGGGGFFLLHDAATGKDVMLDARETAPAAATPQAFLDKQGNLDRDRSVNGAWSAGIPGLPAALVELSAKHGKLPLSASLQPAIRIAREGFPVYDRMAKGYASRREVMERYPGTREVYLRNGKPIASGDLFKQPELAQTLERLAAGGFDGFYKGQTGKLLLAGVKQAGGKWTAEELAGYRVKQREPIVFNYNGWKITTAPPPSSGGIALASMLQILEGWDIRKMDPAHRTHLVVESMRRAYRDRTFFLGDPDFVQIPQKVLTSKDYAQGLRATIHPEKATPSDLLSGNPTPLEDDETTHFSIIDRDGNRVGATQTVNLLYGSGLIPKGTGVLLNNEMDDFALKPGTPNAFGVMGYEANAPKAGKRMLSSMTPTFMENADKVVVLGTPGGSRIITMVLLGILGYDDGLDAQQVAALPRYHHQWLPDLIEAEDDAFDAATVKQLQAMGHKIDLPGDVAAGGRGSSHVWGNLQTVEWDRKANKLFGGSDPRNPVGSAQVVPAR
>NZ_CP040434.1|WP_019338337.1|1708338_1709226_+|MBL-fold-metallo-hydrolase
MKLWSIRGNSQRLDGGAMFGNAPRALWEKWAAPDELNRIELACRALLASPLEGKTVLFETGIGAFFDPRMRERYGVQESQHVLIDSLREAGFEHEDIDVVVLSHLHFDHAGGLLAAWSEGREPELLFPNATYVVGAQHWQRAVQPHPRDRASFIPELPGLLQASGRLEVVDGEYSKALGRSVRFSYSDGHTPGLMLAEIVGHAHAGESAHGGVVFCADLIPGRSWVHVPITMGYDRNAELLIDEKRQFLEDKLARNVRLFFTHDPQVALAQLGRDDKGRFVTLHEQGELKARALG
>NZ_CP040434.1|WP_046430010.1|1709311_1709605_-|starvation-inducible-protein
MKASFLLAAVLLVGLPLAANATTPQQQRMAECSAKNKGLKGDAYKTAQSSCLSGHAAETKAVNPQQERMRKCNADAGAKKLAGDARKTFMSSCLKSS
>NZ_CP040434.1|WP_032959152.1|1709728_1710088_+|helix-turn-helix-transcriptional-regulator
MGKYYPAIEDVFQALADPTRCAIVAALGQGPRTVSMLAEPFEMALPSLMKHLAVLERSGVVRSHKQGRTRTCELVPARLGQAEQWLAEQRAAWEARSDRMVDFVETLHRQEQAHGRRRR
>NZ_CP040434.1|WP_111206157.1|1710068_1710548_+|SRPBCC-family-protein
MAVDAGNNPDTDLVISRVLNAPRAALWRAWTDPELLRQWWCPKPWTTEVRAFDLRPGGAFHTFMQGPDGGSSDNPGSFLEIVPQQRLVFTSMLGAGWRPQSPWLGFTAVITMEDEGQGCRYTARVMHPDKALRDQHEQLGFFNGWTTAIDQLEAFAAGL

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Crispr_ID: NZ_CP040434_8

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP040434_8

3081352-3081446

TypeII

Consensus_repeat	Method
GCCGACCTTGGTCGGCACGCCCA	CRISPRCasFinder

1 spacers

Cas9_archaeal

The CRISPR arrays of NZ_CP040434_8

>merge|NZ_CP040434|8|3081352-3081446|CRISPRCasFinder
GCCGACCTTGGTCGGCACGCCCAGCTTCCCGTAGGTGCCGACCTTGGTCGGCACGCCCAGCTTCCCGTAGGTGCCGACCTTGGTCGGCACACCCA

>NZ_CP040434|8|7|3081352-3081446|CRISPRCasFinder
GCCGACCTTGGTCGGCACGCCCA	GCTTCCCGTAGGTGCCGACCTTGGTCGGCACGCCCAGCTTCCCGTAGGT
GCCGACCTTGGTCGGCACACCCA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP040434.1\|WP_046431774.1\|3090594_3090801_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040434.1\|WP_111206890.1\|3086703_3087369_+\|HNH-endonuclease	Cas9_archaeal	cas9_archaeal	gnl\|CDD\|224321
NZ_CP040434.1\|WP_032956193.1\|3087474_3089382_+\|1-deoxy-D-xylulose-5-phosphate-synthase	unknown	unknown	gnl\|CDD\|235470
NZ_CP040434.1\|WP_111205986.1\|3068882_3070214_+\|exodeoxyribonuclease-VII-large-subunit	unknown	unknown	gnl\|CDD\|234714
NZ_CP040434.1\|WP_014647818.1\|3071791_3073678_-\|formylglycine-generating-enzyme-family-protein	unknown	unknown	gnl\|CDD\|335469
NZ_CP040434.1\|WP_032956157.1\|3067767_3068838_+\|tRNA-epoxyqueuosine(34)-reductase-QueG	unknown	unknown	gnl\|CDD\|272993
NZ_CP040434.1\|WP_136191805.1\|3079107_3079593_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040434.1\|WP_032956176.1\|3089899_3090463_-\|DUF3011-domain-containing-protein	unknown	unknown	gnl\|CDD\|371422
NZ_CP040434.1\|WP_134809115.1\|3073762_3074842_+\|ribonuclease-D	unknown	unknown	gnl\|CDD\|130455
NZ_CP040434.1\|WP_136191776.1\|3084437_3086228_+\|acyl-CoA-dehydrogenase	unknown	unknown	gnl\|CDD\|185635
NZ_CP040434.1\|WP_014647822.1\|3079599_3080361_-\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|180993
NZ_CP040434.1\|WP_005417823.1\|3089521_3089725_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040434.1\|WP_049405026.1\|3083179_3083731_+\|lipocalin-family-protein	unknown	unknown	gnl\|CDD\|336958
NZ_CP040434.1\|WP_111205475.1\|3074931_3076005_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040434.1\|WP_126411191.1\|3081454_3082480_-\|NADP-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|176190
NZ_CP040434.1\|WP_014647826.1\|3083896_3084373_+\|LEA-type-2-family-protein	unknown	unknown	gnl\|CDD\|377000
NZ_CP040434.1\|WP_005417787.1\|3070810_3071707_-\|M48-family-metallopeptidase	unknown	unknown	gnl\|CDD\|320690
NZ_CP040434.1\|WP_049419229.1\|3076076_3078407_-\|TonB-dependent-receptor	unknown	unknown	gnl\|CDD\|238657
NZ_CP040434.1\|WP_014647838.1\|3091202_3091484_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040434.1\|WP_126411190.1\|3080493_3081336_+\|methylated-DNA--[protein]-cysteine-S-methyltransferase	unknown	unknown	gnl\|CDD\|185333

Protein	Function_ID	Function_description	E-value
NZ_CP040434.1\|WP_111205986.1\|3068882_3070214_+\|exodeoxyribonuclease-VII-large-subunit	gnl\|CDD\|234714	PRK00286, xseA, exodeoxyribonuclease VII large subunit; Reviewed.	0
NZ_CP040434.1\|WP_014647818.1\|3071791_3073678_-\|formylglycine-generating-enzyme-family-protein	gnl\|CDD\|335469	pfam03781, FGE-sulfatase, Sulfatase-modifying factor enzyme 1. This domain is found in eukaryotic proteins required for post-translational sulfatase modification (SUMF1). These proteins are associated with the rare disorder multiple sulfatase deficiency (MSD). The protein product of the SUMF1 gene is FGE, formylglycine (FGly),-generating enzyme, which is a sulfatase. Sulfatases are enzymes essential for degradation and remodelling of sulfate esters, and formylglycine (FGly), the key catalytic in the active site, is unique to sulfatases. FGE is localized to the endoplasmic reticulum (ER) and interacts with and modifies the unfolded form of newly synthesized sulfatases. FGE is a single-domain monomer with a surprising paucity of secondary structure that adopts a unique fold which is stabilized by two Ca2+ ions. The effect of all mutations found in MSD patients is explained by the FGE structure, providing a molecular basis for MSD. A redox-active disulfide bond is present in the active site of FGE. An oxidized cysteine residue, possibly cysteine sulfenic acid, has been detected that may allow formulation of a structure-based mechanism for FGly formation from cysteine residues in all sulfatases. In Mycobacteria and Treponema denticola this enzyme functions as an iron(II)-dependent oxidoreductase.	1.90586e-71
NZ_CP040434.1\|WP_032956157.1\|3067767_3068838_+\|tRNA-epoxyqueuosine(34)-reductase-QueG	gnl\|CDD\|272993	TIGR00276, iron-sulfur_cluster-binding_protein, epoxyqueuosine reductase. This model was rebuilt to exclude archaeal homologs, now that there is new information that bacterial members are epoxyqueuosine reductase, QueG, involved in queuosine biosynthesis for tRNA maturation. [Protein synthesis, tRNA and rRNA base modification].	0
NZ_CP040434.1\|WP_111206890.1\|3086703_3087369_+\|HNH-endonuclease	gnl\|CDD\|224321	COG1403, McrA, Restriction endonuclease [Defense mechanisms].	1.54545e-18
NZ_CP040434.1\|WP_032956176.1\|3089899_3090463_-\|DUF3011-domain-containing-protein	gnl\|CDD\|371422	pfam11218, DUF3011, Protein of unknown function (DUF3011). This bacterial family of proteins has no known function. Most members belong to Proteobacteria.	1.2182e-31
NZ_CP040434.1\|WP_134809115.1\|3073762_3074842_+\|ribonuclease-D	gnl\|CDD\|130455	TIGR01388, Ribonuclease_D, ribonuclease D. This model describes ribonuclease D, a 3'-exonuclease shown to act on tRNA both in vitro and when overexpressed in vivo. Trusted members of this family are restricted to the Proteobacteria; Aquifex, Mycobacterial, and eukaryotic homologs are not full-length homologs. Ribonuclease D is not essential in E. coli and is deleterious when overexpressed. Its precise biological role is still unknown. [Transcription, RNA processing].	2.05705e-116
NZ_CP040434.1\|WP_136191776.1\|3084437_3086228_+\|acyl-CoA-dehydrogenase	gnl\|CDD\|185635	PTZ00456, PTZ00456, acyl-CoA dehydrogenase; Provisional.	0
NZ_CP040434.1\|WP_014647822.1\|3079599_3080361_-\|SDR-family-oxidoreductase	gnl\|CDD\|180993	PRK07478, PRK07478, short chain dehydrogenase; Provisional.	2.65574e-135
NZ_CP040434.1\|WP_049405026.1\|3083179_3083731_+\|lipocalin-family-protein	gnl\|CDD\|336958	pfam08212, Lipocalin_2, Lipocalin-like domain. Lipocalins are transporters for small hydrophobic molecules, such as lipids, steroid hormones, bilins, and retinoids. The structure is an eight-stranded beta barrel.	1.19966e-60
NZ_CP040434.1\|WP_032956193.1\|3087474_3089382_+\|1-deoxy-D-xylulose-5-phosphate-synthase	gnl\|CDD\|235470	PRK05444, PRK05444, 1-deoxy-D-xylulose-5-phosphate synthase; Provisional.	0
NZ_CP040434.1\|WP_126411191.1\|3081454_3082480_-\|NADP-dependent-oxidoreductase	gnl\|CDD\|176190	cd05288, PGDH, Prostaglandin dehydrogenases. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES.	2.48681e-166
NZ_CP040434.1\|WP_014647826.1\|3083896_3084373_+\|LEA-type-2-family-protein	gnl\|CDD\|377000	pfam03168, LEA_2, Late embryogenesis abundant protein. Different types of LEA proteins are expressed at different stages of late embryogenesis in higher plant seed embryos and under conditions of dehydration stress. The function of these proteins is unknown. This family represents a group of LEA proteins that appear to be distinct from those in pfam02987. The family DUF1511, pfam07427, has now been merged into this family.	7.45967e-05
NZ_CP040434.1\|WP_005417787.1\|3070810_3071707_-\|M48-family-metallopeptidase	gnl\|CDD\|320690	cd07331, M48C_Oma1_like, Peptidase M48C, integral membrane endopeptidase. This subfamily contains peptidase M48C Oma1 (also called mitochondrial metalloendopeptidase OMA1) protease homologs that are mostly uncharacterized. Oma1 is part of the quality control system in the inner membrane of mitochondria, with its catalytic site facing the matrix space. It cleaves and thereby promotes the turnover of mistranslated or misfolded membrane proteins. Oma1 can cleave the misfolded multi-pass membrane protein Oxa1, thus exerting a function similar to the ATP-dependent m-AAA protease for quality control of inner membrane proteins; it cleaves a misfolded polytopic membrane protein at multiple sites. It has been proposed that in the absence of m-AAA protease, proteolysis of Oxa1 is mediated by Oma1 in an ATP-independent manner. Oma1 is part of highly conserved mitochondrial metallopeptidases, with homologs present in higher eukaryotes, eubacteria and archaebacteria, all containing the zinc binding motif (HEXXH). It forms a high molecular mass complex in the inner membrane, possibly a homo-hexamer.	9.61702e-85
NZ_CP040434.1\|WP_049419229.1\|3076076_3078407_-\|TonB-dependent-receptor	gnl\|CDD\|238657	cd01347, ligand_gated_channel, TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) anti-parallel beta-barrel. Ligands apparently bind to the large extracellular loops. The N-terminal 150-200 residues form a plug from the periplasmic end of barrel. Energy (proton-motive force) and TonB-dependent conformational alteration of channel (parts of plug, and loops 7 and 8) allow passage of ligand. FepA residues 12-18 form the TonB box, which mediates the interaction with the TonB-containing inner membrane complex. TonB preferentially interacts with ligand-bound receptors. Transport thru the channel may resemble passage thru an air lock. In this model, ligand binding leads to closure of the extracellular end of pore, then a TonB-mediated signal facillitates opening of the interior side of pore, deforming the N-terminal plug and allowing passage of the ligand to the periplasm. Such a mechanism would prevent the free diffusion of small molecules thru the pore.	8.81844e-47
NZ_CP040434.1\|WP_126411190.1\|3080493_3081336_+\|methylated-DNA--[protein]-cysteine-S-methyltransferase	gnl\|CDD\|185333	PRK15435, PRK15435, bifunctional DNA-binding transcriptional regulator/O6-methylguanine-DNA methyltransferase Ada.	1.08388e-94

>NZ_CP040434.1|WP_126411190.1|3080493_3081336_+|methylated-DNA--[protein]-cysteine-S-methyltransferase
MDSTATTALDARVERVCRHLQASLDEPSLQELADIAGCSPTRLHRLFKQATGLTPKQYAAALRADRLRTGLEQQERITDAFHDAGFGSSGRFYENAPKLLGMTPKQWRAGGRGEVIHFALAESSLGSVLVASSATGVVAILLGDDPEALLQSLQQRFRQAELVGADHGYEQLVAQVVGLVEDPSRGATLPLDIRGTAFQQRVWQALQQIPRGQTASYADIAAHIGAPRSSRAVARACASNPLAVAVPCHRVVRRDGDLSGYAWGVARKRELLRREKVANG
>NZ_CP040434.1|WP_014647822.1|3079599_3080361_-|SDR-family-oxidoreductase
MRLNNKIALITGASAGIGRASALRFAAEGAKLVLNARRPQPLHALAEQIRGAGGEVVMHAADVADPGTAQALVDLAQQSFGGLDIALNNAGMLGPGVPAAEFPADAWREVMATNLDAAFHAARAQLPALLARGGGSLVFVGTFVGHTVGFPGMAAYASSKAGLIGLSQVIAAEYGARGVRSNVLLPGGTDTEMGRQAAPTGDARDFVRSLHALKRMAEPEEIANAALFLASDESSFVTGTAMRVEGGVSITRT
>NZ_CP040434.1|WP_136191805.1|3079107_3079593_+|hypothetical-protein
MSPPAQHAARTLPMRLDPADGSIQLGHLTTLICPTLSLEEARIAFATLMHGERDAGTGYHWLSLHRVSLGGAPAGISLCFHGQQLDMVKISVDLPGATLEDGWPTQVAIDAEVAFMRRTLATALGRKLAGGRARFEWGEAWARFDPKGFMASSGIHYTPRS
>NZ_CP040434.1|WP_049419229.1|3076076_3078407_-|TonB-dependent-receptor
MPSHSDSRRLSGMSSSFVSFRRHPLALACAGLALVGSFGAAAQDSAPTPTGLDTITVTAEHREQNLQEVPVSVGVVQGERMRDFTAGGDDTLLALSGRVPSLYAETTTGRIFPRFYIRGLGNIDFYLGASQPVSIIQDDVVLEHVVLKSNPVYDVDQVEVLRGPQGSLFGRNTTAGIIKFDTLKPTQDYTGRVSASYATYNSVSIDGGFGGPINDIASFRVSALYQHRDDYVDNTYRGPSADGTVSPKKNAMGGFDDRNVRAQLLLTPSDQFSILASAHARDYEGTSTLFLRGALTKGSNKTDVPRDQVAYDEADNNPQAYKTYGGSVKARYDFGAIDFTSITAYETTSGYSRGDTDGGAAVNFPVNGVPNGYGQSMGRIRDLDQWTQEFRLASHDDSALQWQAGAFYFNGSDTTDFYQRAWFLQGAARNPNNWVRLRNKNTSWAGFGQLSYAFTDKFTVTAGLRQTKDEKHTRLLKTADTAAGVVTYKGRTDVKMSDTTPSWDLSAMYQITPDVSVYAKVARGFRGPTIQGRSAVFNADFTTADSETILSWEAGVKSSLWDNRLRLNATAFTYTVNDIQLNGNDSDGNGVLFNADKAKAYGFEADMELRPIPNLTLSAGVSLLHSEIKDKRVYAQVCGLNGKVVCTVNDPTIKVGANTFAQIDGNPLPNAPKYNVNLAARYDFPVSDAGTMFVSTDWNKQGYTSFVLYDSKEFNSKGDFEGGLKIGYSGNYGAYEVALFARNITNEKNLKGVIENYMAAVYNEPRTVGVSLNMNW
>NZ_CP040434.1|WP_111205475.1|3074931_3076005_+|hypothetical-protein
MQTLKIATACALLLTTLGLACSGQAAPLSYAQEKENTAKLVDIIDGATRDGLVAVLVPAPYVVHNGGPGIGSPVPGFHLGKRSTDLPGFSTRVSFQHKDIPSQGYVQLFNTNELEAGPQRTVLMDVFEVHLIPPGTYLLNGAENYRLNTRVAKLKPLGTTDEVSKDIGATRLADVDYRFYSWKKVWVPPGVLTDQHSQQVCISVHVASGNCVAWGTQNYETSRPTEGYWDDRIVPEDIPAVRIQAVIAKAHAPLAFTAREGQILLSPFIVAADGDIDFNANDCAPVDKLTGCALRRFTVHYQPAPLDAARKHIAITSRGLNGKQRKVLERMEAMQLQVLGPSAPSDAALGKGVSATP
>NZ_CP040434.1|WP_134809115.1|3073762_3074842_+|ribonuclease-D
MAIWITTPAELDPYFQQRPARIGLDTEFIRERTFWPQLALVQMAVGQDILLIDPLIPGMTEALAPWLADESIVKVMHSASEDLVAFKWACGVLPRPLFDTQIGASLAGIGGGMGYQKLVAEITGVALAKGETRSDWMRRPLSDSQLQYAADDVEHLFALHDAIDARLQALGRQQWLHDDGERLLASVANDEDRWPHLAMRSAQFLDTAAQHRLLRLLRWRDVQARSSDRPRSWILDNELAATLARTPPADAAALGKLFEQFPKAPRKLAGAVWQALDTPLADEAEAPLALPANDSNKQALKKLQDAVAERSRELGLPDGVLASRKHLESYLERRQWPAALAGWRQQELEARLQALLPAR
>NZ_CP040434.1|WP_014647818.1|3071791_3073678_-|formylglycine-generating-enzyme-family-protein
MRFPLSSVLCTALALAGCTPSPSATPEPGPAAGEDARPQQGMQADATPEAAQGSVTIAGEDAAEDVQRWTPPRVDRQGRSLAQLRRAAEKAFAEGRLYEDADAAVPLWLAVQEEDPDDRQARNGLQRARQRLQQQADALLVRPLQQREALAEASRQALVLLTLAPKDEKVRALQGRVELAQRVVAYNRAGEEDLRSGRIGEDGDGAIGNFREALALDEHNSRARQGLAAAESGLIRRAEDAARVRDFASAGTWLAEASKVRDSSPAIADAFERIEQIRAAALLQLRDDGLRELATPQGLKPAREKLAEALRIALPGDAVVAQLRERIDLATHYGSFRPGQVFSDAMRDGGRGPQMIVVPHGGFQMGAGDAEPGASDAERPSHYVRFDRGFAMAITEITVSDFERYVKSTNARPRATRRGHSVVYDERSGNFIRRSGVDWRSDYDGARALGNSPVMHVSVRDAENYAAWLSEQTGRSYRLPSEAEFEYALRAGSSGRYPWGDAGTPPPGAGNFTGSKDVSPSGRHWHNAFVGYGDGWWGPAPVASFQANAFGLHDMAGNLSEWVADCWHASYRRAPSDGVAWFNPGCRSRVIRGGNWANAPEQTRAAWRQSQDSDTTNARIGFRLVRGI
>NZ_CP040434.1|WP_005417787.1|3070810_3071707_-|M48-family-metallopeptidase
MRNDPFSRSPQGPQRRGLFGNIRWWVLLLAAGYAVFYWFSNRTVDPYTGEKVMIDSSLDARQETALGLQAYQQILSQERPMDPNAPIARDVRDIAQRLIAKVDVVETALAQEHGVQPAHFARDFQWEVNVIPSEQANAFCLPGGKMAVYTGLVPVARTRDAMAVVMGHEIAHALLRHGAQRMAQQKLTQIGQMAGAASGMDAQQQQMMMSAMGYGYLLPYARSHETQADEVGLMLAAAACFDPREAVPLWQRMGQASGGQAPPEFASTHPNPGTRIQNLQALMPKALEYRQKFCEQAK
>NZ_CP040434.1|WP_111205986.1|3068882_3070214_+|exodeoxyribonuclease-VII-large-subunit
MQPRNNDIFTPSQLNTLARDLLEGSFPAIWVEAELGSVARPASGHLYFTLKDARAQLRAAMFRMKAQYLKFVPREGMRVLVRGKVTLYDARGEYQMVLDHMEEAGEGALRRAFEELKARLEAEGLFDPARKRPLPAHVQRLAVITSPTGAAVRDVLSVLGRRFPLLEVDLLPTLVQGSSAAAQITRLLQAADASGRYDVILLTRGGGSLEDLWAFNDEALARAIAASHTPVVSAVGHETDFSLSDFAADLRAPTPSVAAELLVPDQRELALRLRRTAARMVQLQRHAMQQAMQRADRALLRLNAQSPQARLDLLRRRQLDLGRRLHAAFNQQQERRAARLRHAAAVLRGHHPQRQLDAMQRRLAALRGRPQAAMQRLLERDALRLRGLARSLEAVSPLATVARGYSILTRSDDGTLVRKVDQVQPGDALRARVGDGVIDVQVK
>NZ_CP040434.1|WP_032956157.1|3067767_3068838_+|tRNA-epoxyqueuosine(34)-reductase-QueG
MSPAPTPVDPVQAVQRIRELARAHGFQRCGIAGIELGEDEAHLADWLGQGLYGTMDWMARHGTLRARPAELLPGTVRVISVGMDYSHKDDTEAWATLADPGRAYVARYALGRDYHKLMRNRLQKLATQINDEVAPLGYRVFVDSAPVLERALARNAGLGWIGKHTCLIDRHGGSWFFIGEIYIDIPLPIDTPATAHCGTCTRCIDVCPTQAITGPQRLDARRCISYLTIEHDGAIPEDMRPLIGNRIYGCDDCQLVCPWNKFAKRTDEADFRARNNLDTARLDQLFAWDEAEFLRRTEGSPIRRSGHERWLRNIAVALGNAPSSAEALAALQTRVDDPSPLVREHVQWALGQHTAR
>NZ_CP040434.1|WP_126411191.1|3081454_3082480_-|NADP-dependent-oxidoreductase
MSDSSTASRIVLASRPQGAPSAANFRLEQVALPALADGEVLLRNRYLSLDPYMRGRMDEGPSYAAPVAVGAVMEGQTVAEVLQSKAEGVTAGELVLAPGGWQTHAVLPAKALGRRLDPAGLPLSTALGVYGMPGFTAYSSLHEIARLKPGETLVVAAATGPVGATVAQLAKLQGARVVAIAGGEAKRAYLQTLGVDVALDHRVADFADQLRAAVPAGIDVYFENVGGHVLDAVLPLLNDFARIPVCGTIATYNERGVEQPGPDRLPSLFSQILRQRLTVRGFIVHDFNHLWPDFEREMLQWLREGRIQYREDVVEGLEKAPEAFFGLLQGRNFGKLVVKLD
>NZ_CP040434.1|WP_049405026.1|3083179_3083731_+|lipocalin-family-protein
MHLRPALLACLLLAAFPVIATEPVRAVEHLDIDRYAGQWHEIAHLPVSFQKQCVGDITANYGLRRDGRISVTNACRKGDGERVVAEGVARPVAGHPGQLQVRFVPDWLSWAPLVWADYWVLALDPDYQWALVGEPGRKYLWILSRLPEMERDRFEQLKAKAESMGYDLGPLRLMAPLRDPAAD
>NZ_CP040434.1|WP_014647826.1|3083896_3084373_+|LEA-type-2-family-protein
MLHRFRTALIVLCTLALVACSNGIVKRVSEPAASLQQLTVRADGNWTVALRLQNFSSMPMTFDDVSLALTVGDSDAGTLQVKPGISIGGTSADVINVDLVPSSTARLVVADALASNRTLAYALKGTVAATPQEKKQRSFDISSRSTLNQAPGLPGVLR
>NZ_CP040434.1|WP_136191776.1|3084437_3086228_+|acyl-CoA-dehydrogenase
MSSYTAPLSDLRFALHDVLKVEPLFARLGFTDATADVVDAVLEEAGRFSATVLAPLNSVGDEIGCVLDQATGEVTTPPGFKQAYDQFVDGGWTGLTASPELGGQGLPHTLGVPLNEMINAANLAWGNFPLLSHGAIEALKQHGEAWQHDAFLKPLIEGRWTGTMCLTEPHCGTDLGLLKTKAEPNADGSYSITGTKIFITAGEHDLTGNIVHLVLAKLPDAPPGAKGISLFVTPKFKVDRDGNVGERNALRCGSIEHKMGIKGSVTCVMNFNGAQGYLVGQPHKGLQAMFTMMNTARLGVGLQGIGLSERAYQNALKYSRERLQSRALSGARFPDKPADPILVHPDVRRMLLTVKSLVEGSRLLALHAATLIDIAHHAEDAAERERADTLVSFLTPISKACQTEWGIENTYNALQCFGGHGYIREHGMEQLARDARITTLYEGTTGIQALDLIGRKTASSQGAGLKLMLAEIEAFAKEHEGNEALAEFIGPLRAKAAEWGKLTMDVLQRAAANPDELGAASYDYLFYSGYVVLAYWWARSVAAADASAHGAAFAQGKRETARFYFARVLPRTLSHAAAIQAGAAPLMAMDDERFGA
>NZ_CP040434.1|WP_111206890.1|3086703_3087369_+|HNH-endonuclease
METDTTRLGLIEAGAPFSAPGAEASPNATTLHRPGSVRLLSLDAHGRVLDWITWQDAACLYAREAVAWTLGDPCLHIHGGTNRFSGLQSGMDLHPIIAARGHARSRAIDPTPNLTNQALFARDAQLCMYCGQQFSRPTLTRDHVMPLSKGGLDCWENVVTACFHCNSRKSDRTPQQAGMPLLAVPYRPSWIEHLILSNRNILADQMAFLKAQLPKRSKLST
>NZ_CP040434.1|WP_032956193.1|3087474_3089382_+|1-deoxy-D-xylulose-5-phosphate-synthase
MIDSARYPRLARIQTPDDLRTFDESELRAVADELRAYLIESVGKSGGHFAAGLGVIELTVALHYLYQTPHDQLVWDVGHQTYPHKILTGRRDEIHTVKQKDGIAPFPKREESEYDTFGVGHSSTSISAALGMAIARQSEGDDRKIVAVIGDGAMTAGMAFEALMHAGGMEPEPNLLVILNDNNMSISEAVGGLTKMLGRATGSRTLNALREGGKKILGDKKNNPARFVKRWEEHWKGMFVPSTMFEEMGFHYTGPIDGHDMPALLSTLKTLRASKGPKLLHVMTTKGKGYEPAEGDQIGYHAVGPFDPDKGLVAKAGAKKPTYTDVFSDWLCDAAAAEPRLYGITPAMREGSGLVRFSKEYPQRYFDVAIAEQHAVTLAAGMATQGGKPVVAIYSTFLQRAYDQLVHDVAIQDLDVLFAIDRAGVVGPDGATHAGNLDLSFLRCVPNLVVMAPSNEAECRQMLSTGLQHPGPAAVRYPRGTGTGVAAGTDLSTLPIGKGELRLQGSRIALLAFGSTVAAAEQVGRELGLSVVNMRFIKPLDRELVLAVAAQHEGLVTIEDNVVAGGAGSGVGELLNAEGVLRPILHLGLPDSYQHHASREDLLAEAGIDAAGIRAAVLKRWPQLAAGTPPLSAAG
>NZ_CP040434.1|WP_005417823.1|3089521_3089725_-|hypothetical-protein
MLIRLQCEQRQWRVLHPDRPEPIEFRDGARAYDFAETLARLHFVDTGQRAAVRVEASGAFVEAVSYG
>NZ_CP040434.1|WP_032956176.1|3089899_3090463_-|DUF3011-domain-containing-protein
MGKALTWRTLACTLLPMLAAAGGAQAQSYGYGYDDDRYGGRDGSGIVRCESVKNRSNECRLDGRARLIRQLSGSPCVEGETWGQSRNGVWVTQGCRAEFVGEYRRGGGWGGNGGGWGNGNGNGWGGGDVVTCHSNGHRQEYCDARIRRGVRLIRQDSRSACIEGQSWGWDRRGIWVSDGCRAQFQVN
>NZ_CP040434.1|WP_046431774.1|3090594_3090801_-|hypothetical-protein
MVITVQCTAQRWSVLHPQAREATRYARGADAFDAAAALALEHHRRTGQRSTVRVEALGNTVDALHVGE
>NZ_CP040434.1|WP_014647838.1|3091202_3091484_+|hypothetical-protein
MKVLLLIPALLVLAACASPDNAAPRADGKPSTTMPKVGGDRDAHGCIGSAGYQWCEHSQRCERPWELAQAHGLANSAEAIDAYCATPASPARK

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Crispr_ID: NZ_CP040434_9

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP040434_9

3601181-3601276

Orphan

Consensus_repeat	Method
GTTGCCGGCCAGCGGCCGGCACTACC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP040434_9

>merge|NZ_CP040434|9|3601181-3601276|CRISPRCasFinder
GTTGCCGGCCAGCGGCCGGCACTACCGAATGCAGTAGATCCACGCCATGCGTGGATACGCGCTATAGGGCGTTGCCGGCCAGCGGCCGGCACTACC

>NZ_CP040434|9|8|3601181-3601276|CRISPRCasFinder
GTTGCCGGCCAGCGGCCGGCACTACC	GAATGCAGTAGATCCACGCCATGCGTGGATACGCGCTATAGGGC
GTTGCCGGCCAGCGGCCGGCACTACC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP040434.1\|WP_111206595.1\|3599945_3601148_+\|lipase	unknown	unknown	gnl\|CDD\|367570
NZ_CP040434.1\|WP_111206601.1\|3610629_3611562_-\|sterol-desaturase-family-protein	unknown	unknown	gnl\|CDD\|377224
NZ_CP040434.1\|WP_049440369.1\|3605576_3607190_+\|PAS-domain-containing-protein	unknown	unknown	gnl\|CDD\|236901
NZ_CP040434.1\|WP_005410793.1\|3603105_3603981_-\|succinate--CoA-ligase-subunit-alpha	unknown	unknown	gnl\|CDD\|180194
NZ_CP040434.1\|WP_111206591.1\|3596034_3596472_-\|thiol-disulfide-oxidoreductase-DCC-family-protein	unknown	unknown	gnl\|CDD\|225556
NZ_CP040434.1\|WP_111206589.1\|3589434_3591870_+\|TonB-dependent-receptor	unknown	unknown	gnl\|CDD\|238657
NZ_CP040434.1\|WP_014648189.1\|3592021_3592780_+\|trehalose-phosphatase	unknown	unknown	gnl\|CDD\|319767
NZ_CP040434.1\|WP_049416952.1\|3611666_3612095_-\|prepilin-type-N-terminal-cleavage/methylation-domain-containing-protein	unknown	unknown	gnl\|CDD\|227304
NZ_CP040434.1\|WP_004154430.1\|3604001_3605171_-\|ADP-forming-succinate--CoA-ligase-subunit-beta	unknown	unknown	gnl\|CDD\|234813
NZ_CP040434.1\|WP_111206593.1\|3596973_3597744_-\|peptidoglycan-editing-factor-PgeF	unknown	unknown	gnl\|CDD\|182677
NZ_CP040434.1\|WP_111206597.1\|3601290_3602925_-\|NAD+-synthase	unknown	unknown	gnl\|CDD\|237577
NZ_CP040434.1\|WP_049416954.1\|3612449_3613709_+\|type-II-secretion-system-F-family-protein	unknown	unknown	gnl\|CDD\|224376
NZ_CP040434.1\|WP_111206599.1\|3608738_3610469_-\|type-IV-A-pilus-assembly-ATPase-PilB	unknown	unknown	gnl\|CDD\|274186
NZ_CP040434.1\|WP_014648191.1\|3594599_3595964_+\|alpha,alpha-trehalose-phosphate-synthase-(UDP-forming)	unknown	unknown	gnl\|CDD\|274112
NZ_CP040434.1\|WP_005418626.1\|3613712_3614576_+\|prepilin-peptidase	unknown	unknown	gnl\|CDD\|224900
NZ_CP040434.1\|WP_032960726.1\|3598846_3599734_+\|outer-membrane-protein-assembly-factor-BamD	unknown	unknown	gnl\|CDD\|274513
NZ_CP040434.1\|WP_049405671.1\|3607250_3608624_+\|sigma-54-dependent-Fis-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225114
NZ_CP040434.1\|WP_111206620.1\|3592821_3594603_+\|glycoside-hydrolase-family-15-protein	unknown	unknown	gnl\|CDD\|225922
NZ_CP040434.1\|WP_049440363.1\|3596446_3596953_-\|DUF4166-domain-containing-protein	unknown	unknown	gnl\|CDD\|379359
NZ_CP040434.1\|WP_014038257.1\|3597743_3598733_-\|23S-rRNA-pseudouridine(1911/1915/1917)-synthase-RluD	unknown	unknown	gnl\|CDD\|183020

Protein	Function_ID	Function_description	E-value
NZ_CP040434.1\|WP_111206595.1\|3599945_3601148_+\|lipase	gnl\|CDD\|367570	pfam03583, LIP, Secretory lipase. These lipases are expressed and secreted during the infection cycle of these pathogens. In particular, C. albicans has a large number of different lipases, possibly reflecting broad lipolytic activity, which may contribute to the persistence and virulence of C. albicans in human tissue.	2.58669e-05
NZ_CP040434.1\|WP_111206601.1\|3610629_3611562_-\|sterol-desaturase-family-protein	gnl\|CDD\|377224	pfam04116, FA_hydroxylase, Fatty acid hydroxylase superfamily. This superfamily includes fatty acid and carotene hydroxylases and sterol desaturases. Beta-carotene hydroxylase is involved in zeaxanthin synthesis by hydroxylating beta-carotene, but the enzyme may be involved in other pathways. This family includes C-5 sterol desaturase and C-4 sterol methyl oxidase. Members of this family are involved in cholesterol biosynthesis and biosynthesis a plant cuticular wax. These enzymes contain two copies of a HXHH motif. Members of this family are integral membrane proteins.	5.88185e-25
NZ_CP040434.1\|WP_049440369.1\|3605576_3607190_+\|PAS-domain-containing-protein	gnl\|CDD\|236901	PRK11360, PRK11360, two-component system sensor histidine kinase AtoS.	1.13676e-37
NZ_CP040434.1\|WP_005410793.1\|3603105_3603981_-\|succinate--CoA-ligase-subunit-alpha	gnl\|CDD\|180194	PRK05678, PRK05678, succinyl-CoA synthetase subunit alpha; Validated.	0
NZ_CP040434.1\|WP_111206591.1\|3596034_3596472_-\|thiol-disulfide-oxidoreductase-DCC-family-protein	gnl\|CDD\|225556	COG3011, COG3011, Predicted thiol-disulfide oxidoreductase [General function prediction only].	1.87896e-51
NZ_CP040434.1\|WP_111206589.1\|3589434_3591870_+\|TonB-dependent-receptor	gnl\|CDD\|238657	cd01347, ligand_gated_channel, TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) anti-parallel beta-barrel. Ligands apparently bind to the large extracellular loops. The N-terminal 150-200 residues form a plug from the periplasmic end of barrel. Energy (proton-motive force) and TonB-dependent conformational alteration of channel (parts of plug, and loops 7 and 8) allow passage of ligand. FepA residues 12-18 form the TonB box, which mediates the interaction with the TonB-containing inner membrane complex. TonB preferentially interacts with ligand-bound receptors. Transport thru the channel may resemble passage thru an air lock. In this model, ligand binding leads to closure of the extracellular end of pore, then a TonB-mediated signal facillitates opening of the interior side of pore, deforming the N-terminal plug and allowing passage of the ligand to the periplasm. Such a mechanism would prevent the free diffusion of small molecules thru the pore.	7.48298e-64
NZ_CP040434.1\|WP_014648189.1\|3592021_3592780_+\|trehalose-phosphatase	gnl\|CDD\|319767	cd01627, HAD_TPP, trehalose-phosphate phosphatase similar to Escherichia coli trehalose-6-phosphate phosphatase OtsB and Saccharomyces cerevisiae trehalose-phosphatase TPS2. Trehalose biosynthesis in bacteria is known through three pathways - OtsAB, TreYZ and TreS. The OtsAB pathway, also known as the trehalose 6-phosphate synthase (TSP)/ Trehalose-6-phosphate phosphatase (TPP) pathway, is the most common route known to be involved in the stress response of Escherichia coli. It involves converting glucose-6-phosphate and UDP-glucose to form trehalose-6-phosphate (T6P), catalyzed by TPS, the product of the otsA gene, this step is followed by the dephosphorylation of T6P to yield trehalose and inorganic phosphate, catalyzed by a specific TPP, the product of otsB gene. This OtsAB (or TSP/TPP) pathway, is also the most common route known to be involved in the stress response of yeast In Saccharomyces cerevisiae, the corresponding enzymes, TPS1p and TPS2p, form a multimeric synthase complex together with additional regulatory subunits encoded by Tsl1 and Tps3. Trehalose is a common disaccharide accumulated by organisms as a reservation of carbohydrate and in response to unfavorable growth conditions. This family belongs to the haloacid dehalogenase-like (HAD) hydrolases, a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members of this superfamily include 2-L-haloalkanoic acid dehalogenase, azetidine hydrolase, phosphonoacetaldehyde hydrolase, phosphoserine phosphatase, phosphomannomutase, P-type ATPases and many others. HAD hydrolases are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.	5.70512e-65
NZ_CP040434.1\|WP_049416952.1\|3611666_3612095_-\|prepilin-type-N-terminal-cleavage/methylation-domain-containing-protein	gnl\|CDD\|227304	COG4969, PilA, Tfp pilus assembly protein, major pilin PilA [Cell motility and secretion / Intracellular trafficking and secretion].	3.10059e-22
NZ_CP040434.1\|WP_004154430.1\|3604001_3605171_-\|ADP-forming-succinate--CoA-ligase-subunit-beta	gnl\|CDD\|234813	PRK00696, sucC, ADP-forming succinate--CoA ligase subunit beta.	0
NZ_CP040434.1\|WP_111206593.1\|3596973_3597744_-\|peptidoglycan-editing-factor-PgeF	gnl\|CDD\|182677	PRK10723, PRK10723, polyphenol oxidase.	1.13195e-89
NZ_CP040434.1\|WP_111206597.1\|3601290_3602925_-\|NAD+-synthase	gnl\|CDD\|237577	PRK13981, PRK13981, NAD synthetase; Provisional.	0
NZ_CP040434.1\|WP_049416954.1\|3612449_3613709_+\|type-II-secretion-system-F-family-protein	gnl\|CDD\|224376	COG1459, PulF, Type II secretory pathway, component PulF [Cell motility and secretion / Intracellular trafficking and secretion].	7.73714e-151
NZ_CP040434.1\|WP_111206599.1\|3608738_3610469_-\|type-IV-A-pilus-assembly-ATPase-PilB	gnl\|CDD\|274186	TIGR02538, Type_IV_pilus_assembly_protein_PilF, type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems. [Cell envelope, Surface structures, Protein fate, Protein and peptide secretion and trafficking].	0
NZ_CP040434.1\|WP_014648191.1\|3594599_3595964_+\|alpha,alpha-trehalose-phosphate-synthase-(UDP-forming)	gnl\|CDD\|274112	TIGR02400, Alphaalpha-trehalose-phosphate_synthase, alpha,alpha-trehalose-phosphate synthase [UDP-forming]. This enzyme catalyzes the key, penultimate step in biosynthesis of trehalose, a compatible solute made as an osmoprotectant in some species in all three domains of life. The gene symbol OtsA stands for osmotically regulated trehalose synthesis A. Trehalose helps protect against both osmotic and thermal stresses, and is made from two glucose subunits. This model excludes glucosylglycerol-phosphate synthase, an enzyme of an analogous osmoprotectant system in many cyanobacterial strains. This model does not identify archaeal examples, as they are more divergent than glucosylglycerol-phosphate synthase. Sequences that score in the gray zone between the trusted and noise cutoffs include a number of yeast multidomain proteins in which the N-terminal domain may be functionally equivalent to this family. The gray zone also includes the OtsA of Cornyebacterium glutamicum (and related species), shown to be responsible for synthesis of only trace amounts of trehalose while the majority is synthesized by the TreYZ pathway; the significance of OtsA in this species is unclear (see Wolf, et al., ). [Cellular processes, Adaptations to atypical conditions].	0
NZ_CP040434.1\|WP_005418626.1\|3613712_3614576_+\|prepilin-peptidase	gnl\|CDD\|224900	COG1989, PulO, Type II secretory pathway, prepilin signal peptidase PulO and related peptidases [Cell motility and secretion / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion].	4.39586e-59
NZ_CP040434.1\|WP_032960726.1\|3598846_3599734_+\|outer-membrane-protein-assembly-factor-BamD	gnl\|CDD\|274513	TIGR03302, OM_YfiO, outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). [Protein fate, Protein and peptide secretion and trafficking].	4.32143e-90
NZ_CP040434.1\|WP_049405671.1\|3607250_3608624_+\|sigma-54-dependent-Fis-family-transcriptional-regulator	gnl\|CDD\|225114	COG2204, AtoC, Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms].	0
NZ_CP040434.1\|WP_111206620.1\|3592821_3594603_+\|glycoside-hydrolase-family-15-protein	gnl\|CDD\|225922	COG3387, SGA1, Glucoamylase and related glycosyl hydrolases [Carbohydrate transport and metabolism].	1.59357e-82
NZ_CP040434.1\|WP_049440363.1\|3596446_3596953_-\|DUF4166-domain-containing-protein	gnl\|CDD\|379359	pfam13761, DUF4166, Domain of unknown function (DUF4166). This domain is often found at the C-terminus of proteins containing pfam03435.	1.0323e-21
NZ_CP040434.1\|WP_014038257.1\|3597743_3598733_-\|23S-rRNA-pseudouridine(1911/1915/1917)-synthase-RluD	gnl\|CDD\|183020	PRK11180, rluD, 23S rRNA pseudouridine(1911/1915/1917) synthase RluD.	1.70408e-146

>NZ_CP040434.1|WP_111206595.1|3599945_3601148_+|lipase
MAPLRCSFRPLSCLIATALLALSPRPLAAAPAAPGDLLSAAPYRASWVPSRAAQAYKLHYRTPDHRGQLAEGTGLLYLPAGAAPAGGWPVVSWAHGTQGIADRCAPSVSGPTHAERDGRFLDVFLAQGYAVAAADYQGLGSPGNHAYLHVRTAARNAIDMVKASRQYLGTATLSPRWVSVGYSQGGAAALTAGHLAASHGGPSLQYRGSFTAGTPTAVELTALVMNPGNRTANPGAPNAYHAYLLDGLLQAAPQIDRVLSDAGRARVAVAREQCLSELTATLDGADTGSMFTAPLTSVPGIWAVLYDYLGVPRRGFSQPLMLAHGSEDRDVPYLTTLLYAASLALRGEPVAFRRYPVDHRGTLDAAAADALAFVRARLEGDHFNDAAEIAGLEQRLDEAR
>NZ_CP040434.1|WP_032960726.1|3598846_3599734_+|outer-membrane-protein-assembly-factor-BamD
MIRRSAMLSAPVRLTALLLVLVIAATGCHRGAKKGDRPDEGVPVEQLYEKSHKLMQGGNWSGAEASFRRLVAQYPYGPYTEQAMIETAYAQYKAGKHDDAVSSIDRFIRTYPTHRNIAYLYYLRGLANSNRSTVFLRRVWSLDASRRDLSTPHQAYSDFNIVVDRYPNSRYAADARQRMLELRDVFAQHELDNALYYMRRGAWVSAVGRANYLLETYPQSAFQYDAVAVLADSYTHLGNKTLADDARRVLQLNQPDHPWLEGKWPKYPWMIRKLNPFAGEKSASTGQRNARLEKK
>NZ_CP040434.1|WP_014038257.1|3597743_3598733_-|23S-rRNA-pseudouridine(1911/1915/1917)-synthase-RluD
MSEQPSESARQAIVPDTAAGRRFDAVVAELFPEYSRSRLTEWIKSGDVLLDGAQVRPRDPLRGGEVVTLHVVLETQTDAQPEDIPLDVLFEDEHVLVINKPVGLVVHPGAGNHSGTLVNALLFRDPSVAVLPRAGIVHRLDKDTSGVMVVAKTLEAQTALVEQLAARDVHRQYLAIVMGALVAGGTADAPIDRHPRDRLKMAVREDGKEAVTHYRLRERFRAHTALECRLETGRTHQIRVHMAHVRHPIIGDPLYGGALKLPKGASDELVAALRGFKRQALHAETLEFMHPITGEPVRNTAPVPEDMLHLMKVLREDSEAFAARERDRW
>NZ_CP040434.1|WP_111206593.1|3596973_3597744_-|peptidoglycan-editing-factor-PgeF
MAAALPLLQADWPAPAGVHALTTRRHGAGISPAPFAQFNLGNRHAADGDTPANVEHNRKLLQEGLALPSAPHWLRQVHSSTVLRFTAPPVPGTSEPVADAAVTSVPGVVLAILTADCLPVVFAAADGSEVGAAHAGWRGLADGMLEATVAALQTPPAQLRAWLGPAAGPSDYEIGEEVYHAFVGHDPAAEAAFVATRPGHWKVDLFALARQRLQAAGMDPAQVYGGTVSTMADPDLYSHRRDRRTGRMATLAWIAP
>NZ_CP040434.1|WP_049440363.1|3596446_3596953_-|DUF4166-domain-containing-protein
MLGPAFATLAAPVQALHAAPLPCRYVGQARIVRGRHWLVPLLATLARLPKDGDALPTEVAFSARGQGEQWARRFGRWPMVSRLWAHEGLLREQLGAVRFEFALQAREGGIDWSVRRVWAFGLLPLPTRWFGGVRCREAWRGERYTFLVDVTLPWAGALIRYEGWLEPQ
>NZ_CP040434.1|WP_111206591.1|3596034_3596472_-|thiol-disulfide-oxidoreductase-DCC-family-protein
MKAGSNHSDGAAGTGSAVIVFDGVCALCNRWVRFLLRFDRKGRYRFAAMQGQQGSAMLRAHGLDPQDPMSFLLLDAQGTWTDTDAILRVLAGLGGGWRLSGVLKVLPRGLRDAAYRALARNRYRWFGRHDACHLPAPEQAARFLD
>NZ_CP040434.1|WP_014648191.1|3594599_3595964_+|alpha,alpha-trehalose-phosphate-synthase-(UDP-forming)
MSRLVVVSNRVAVPGENRAGGLAVGLLAALKERGGLWFGWSGKTVKDGSGTLHRQKDGDIDYVTMDLSKREVDGYYNGFANRTLWPLLHFRLDLVDYDRATRETYHKVNALFADKLAPLLREDDIVWIHDYHLIPLGALLRERGIGCRIGFFLHIPMPSADLLQAMPDHLRLFSALYAYDLVGFQTQRDADRFQTYLRLFGGGRVLANGELEAPGGRRFRAAAFPIGIDTELIARQAGTAATKAAVKNLRASLRDRQLAIGVDRLDYSKGLPERFLGFERYLERHPDQRGSLTYLQIAPVSRGDVTEYRQLRSQLEQIAGHINGGHAEPDWTPLRYVNQNFTHATLTGFYRAAAVGLVTPLRDGMNLVAKEYVASQDPEDPGVLVLSLLAGAADELKQALLVNPHDLDGVADAIATAATMSLRKRKERWHAMMEHLRTYDINHWRRSYLDALEG
>NZ_CP040434.1|WP_111206620.1|3592821_3594603_+|glycoside-hydrolase-family-15-protein
MTQPDLDLGVVGNGSFGALVDKRARVAWSCLPTFDGDPTFCALLGPNQQTGGDFAIELEDFASSEQEYLTNTAILRTVLRDAHGGELEILDFAPRWRQNDRFYRPVSLIRQVRPLAGSPRITVRARPLADWGARVPESTWGSNHVRWILPEHVLRLTTDVPVRFVRDGLPFVLNHPIHLILGVDESLNRSISGYVQEAFQRTRDYWREWVRYLSIPLEWQDAVIRSAITLKLCQYEDSGAIIAAMTTSIPEAPGSVRNWDYRYCWLRDAAFVVRALNRLGATRTMEQFLGYIFNLATTDGTLQPLYGIGFEAKLDEDEVPSLSGYRGMGPVRRGNLAWVQRQHDVYGSVVLASTQLFFDRRLQDPGDAHTFARLEPLGEQAFALHDVPDAGLWEFRGRTEVHTYTSAMCWAACDRLCKIAVRLKRDDRAHYWRERADTIHARIMAESWNEELGHFTDTFGGHRLDASLLLLADIGFIDAMDARFIATVDAIGRDLKHGNSLYRYVAPDDFGEPETSFTICTFWYIDALAAIGRMDEAREMFELLLKQRNHLGLLSEDLAFDSGEAWGNFPQTYSHVGLITAAMRLSRSWQEAS
>NZ_CP040434.1|WP_014648189.1|3592021_3592780_+|trehalose-phosphatase
MAEPLPLRPPPPLLDDACALFLDVDGTLIEFAARPDAVQLLPDVREAIGRISDRLEGAVALVSGRPLEQLDQLFAPLQLPAAGLHGHELRGEDGRVLRDEHDDDTAEWLHALHQQAMRFAHGHPGVLVEDKGVGLALHWRGAPHAASDVRAFADRHVRGRASYRLQPGDHVVEFVPVGTDKGRAVRRMMQYLPFRGRLPVFLGDDLTDEFGFDAANSQHGWSVLVGEREPSAAVFALPDIRSVHAWLRENAY
>NZ_CP040434.1|WP_111206589.1|3589434_3591870_+|TonB-dependent-receptor
MSARLPASPLGLAIALALSSAAVPALAQDATNLDTVIVTGTRAADRTVLESTSPVDVLTAEDIRKAGVVNGELGSALQALLPSFNFPRQSNSGGADHVRAAQLRGLSPDQVLVLVNGKRRHHTALVNTDSKIGKGTTPVDFNAIPVSAIKRIEVLRDGAGALYGSDAVAGVINVILDNGGDGGEIEASYGANHTDLKPIGRTLTDGQTGNVSAKVGTSLGEDGGFLRVGLEYKHRNGTNRAGFDQIPPWDQTPDNLALQGKRNYVLGDGKSKDINLWLNTEIPVGQTSTFYAFGTFNQRDTEGANYFRYPDGDANWKQVYPNGYRPISEGENRDVQAVAGVRGQWGEWSYDSSLDYGQNDFTYRLRDSLNASLGPTSPTRFKTADYEYAQTVGNLDLSRVFTQSDSISHTLGLGVEARHERYQTRPGDPASYAAGPYTDRPTGSQAGGGLTPQDAATLSRDVASAYASLSSQFGEKFSTDLAARYEHNDDFGGELTGKLGLRYEFTPAFALRGAISNNFRAPSLAQIGYESTSTGYNAGGQLVQGRLLSVNNPIARGLGAQNLKPEKSINTSLGFTSRIGEHFDLSLDFFQIDIDDRIALSESITGDALTDYVAASYGVSGLQSASFFVNAADTRTRGAELVSNWRQSLGDGQLLLTGTYAYTKTTLKNVLATPAQLRALNPDYVLFGIEETNTLTDATPRTRGSFSAAWSNDHWSLSTRVNRYGSATRVFNFGDGYIPRQTYQAEWQLDAEVEYRITPQWSVAIGGQNLTDNYPDRSNSDIHYFGNLPYDVLSPIGSNGAYYYGRVRYTF
>NZ_CP040434.1|WP_111206597.1|3601290_3602925_-|NAD+-synthase
MASIRIAMAQFDFPVGDVAGNTERIIEMIGQARDEYGAELVMFPELAVSGYPPEDLLLRPGFLYECEQAMARIAAACRGITAVVGWPQAAGAVVYNAASVLRDGLVEQTYRKRELPNYAVFDERRYFDVDPDGGSCVFEVNGIPVGLLICEDLWFAEPLADTMRAGAQLVVVPNASPYERGKHAQRDAVLAARTRESGAAIAYLNVVGGQDALVFDGASVVADGDGTVHPAAAAFVDQWLVVEYDGASRRFMPHVWMDDGDESMDALAWRAVTRGIQDYCRKNGFKKVWLGLSGGIDSAIVLAMAVDAMGAENVTAVRLPSRYTAGLSNDLAAEQCQALGVKLETVSIEPAFKGLMEALAPMFEGTAPDVTEENLQSRSRGVILMALANKFGGLLLTTGNKSEYAVGYATIYGDMCGGYAPLKDLYKTEVFGLSKWRNTVGGAPVIPPAVISRPPSAELRENQLDQDSLPAYDVLDGILYRYIDQEQSRTEIVAAGYDAAVVDRVLRLVRISEWKRHQAAPGPKVSRRAFGRERRYPISNGYKG
>NZ_CP040434.1|WP_005410793.1|3603105_3603981_-|succinate--CoA-ligase-subunit-alpha
MSVLINKNTKVIVQGFTGQQGTFHATQMIEYGTQVVGGVTPGKGGTTHIDLPVFNTVADAVQSTGANASVIYVPPPYAADAILEAAAAGIKVIVCITEGIPVLDMLRVKNVLTRSHPDTVLIGPNCPGVITPGECKIGIMPGHIHQPGKIGIVSRSGTLTYEAVKQTTEVGLGQSTCIGIGGDPINGLNFVDCLKLFNEDPQTEGIIMVGEIGGDAEEAGAEYIKNHVKKPVVGFIAGASAPAGKRMGHAGAIASGGKGTAEGKFAAMEAAGVVTVRSPGDLGAAIAKLVK
>NZ_CP040434.1|WP_004154430.1|3604001_3605171_-|ADP-forming-succinate--CoA-ligase-subunit-beta
MNFHEYQSKQLLAEYGIPVPAGKVAATPDEAVAAANSLGQGPWMVKAQIHAGGRGKAGGVKFCKTTDDVKAAAAKMLGTKMATYQTAGVELPVNLVLVTTAGEIVKELYLSVLVDRGTKTITYIASSEGGVEIEQVAAETPELIHSLNVDFVEGVQGYHGRDFGFKLGLTAKQAGQFASIMVNLYRLFNEKDLALVEINPLAILDDGNLYALDGKFDSDDNAAFRQKALVAMRDKTQEDPTEVIASELDINYVTMDGNIGCMVNGAGLAMATMDVIKLNGGEPANFLDVGGGANKQRVIEAFKLILSSDKVEGIFVNIFGGIVRCDMIAEGIIAAVKEVGVKVPVVVRLEGTNVEEGKQLLRDSGMAIIPADNINDGAKKIVEAVKNAA
>NZ_CP040434.1|WP_049440369.1|3605576_3607190_+|PAS-domain-containing-protein
MSPSASLIDRIESIPRRELYFFALYRVLIASVIAALLYSPLSAMVGEAHHPRLADTVAAIYLVLSLLALVIGRNERWLRPIVVSGVLVDIVAATLLSHALPGASAGISMSLLFNIAAAATLLPLSLGLGLALAASLATGVEYTWKLLEGGDPTRTLAELAMFATSYLALAFISYQVGSRARRNQQLANQRGDEVANLFQINELIIRRMRTGVLVVDADNRVTLANEAAAMLLGDNDGSGESGRLDLASAAPELARRLQRWRNGWAQDELPLQLNPDQPEVQPRFARLLAGSDLALVFLDDSSVVSRRAESLTLSAMGRFSASLAHEIRNPLAAINYAVQLLEEGTGFNESDRRLLQIIRQQCQRTNGIVESVLGLARRERATPENVDLAAFVRRFVLEYKQGQTLETDSIEPIINDTSVLAQVDTKHLYQVLTVLVHNALKYGRIGQQPARVRLRVAQHERSAVIDVMDRGPGIPESVAAQLFRPFFTTSEHGTGLGLYIARELCRANQARLDYIPVPAGGSCFRLVLPGPHTLLPT
>NZ_CP040434.1|WP_049405671.1|3607250_3608624_+|sigma-54-dependent-Fis-family-transcriptional-regulator
MNETRSALVVDDERDIRELLVLTLGRMGLRISTAANLAEARELLASNPYDLCITDMRLPDGNGIELVSEIAQHYPRTPVAMITAFGSMDLAVEALKAGAFDFVSKPVDIAVLRGLVKHALELNNTERPAPGPAAEQGARLLGDSPAMDVLRTTIGKVARSQAPVYILGESGVGKELVARTIHAQGARAAGPFVPVNCGAIPGELMESEFFGHRKGSFSGAHADKPGLFQAAHGGTLFLDEVAELPLQMQVKLLRAIQEKSVRAVGAAAEEPVDVRILSATHKDLAELVEDGRFRHDLYYRINVIELRVPPLRERRQDLPELAASVLARLARSHGRPTPLLAPSALDALAQYAFPGNVRELENILERALALAEEDRIGADDLRLPQHAPRTPGSAAHAEAVVDLQPGSAALPSYIEQLERSAIQRALEENRWNKTRTAAQLGITFRALRYKLKKLGME
>NZ_CP040434.1|WP_111206599.1|3608738_3610469_-|type-IV-A-pilus-assembly-ATPase-PilB
MNTVTTANLVGITGLARRLVQDGALDEASARDAMAKAAAARQPLPTWFAQNKVVGAAQLAAANAVEFGMPLFDVSTFDASQNAMSLVSEELLRKHNVLPLFKRGGKLFVGTSNPTHSLDEIKFHTNLVVEPILVDEDQIRRTLEQWHASHDTLGDALSGDDDGIGNLDVSGGDEDISGAGDSGIDAKGDDTPVVKFVNKVLVDAIRKGASDIHFEPYEDDYRVRLRIDGLLKMVARAPVKLNQRIAARLKVMAQLDIAEKRVPQDGRIKLNLSKTKQIDFRVSTLPTLFGEKVVLRILDGSAAKLGIDKLGYEPDQQKLFLDAIHKPYGMVLVTGPTGSGKTVSLYTALGILNDETRNISTAEDPVEIRLPGVNQVQQNNKRGMTFAAALRSFLRQDPDIIMVGEIRDLETAEIAIKAAQTGHMVLSTLHTNDAPQTIARLMNMGIAPYNITSSVTLVIAQRLARRLCNNCKRPANLPEHALLAEGFTQAQLDAGIELYEAVGCDECTEGYKGRTGIYQVMPMTDEIATIVLAGGNALQIAEAAQQIGVNDLRQSALKKAAAGVTSLAEINRVTKD
>NZ_CP040434.1|WP_111206601.1|3610629_3611562_-|sterol-desaturase-family-protein
MSLAAQILISSTQGGFRVVSQQGGEGSRMIGPGLNFDVAAQFQSAISGLLPEIGAFLLLAAIVNRNDLVGVVRRLLPAGCHVNVLSFLLDALLVAPLLGMGMVLMQRSVAWAWTGALDAMWAEFPKWLLLLVVLFVGDAIGYFRHRLEHCKWLWLFHEMHHSDRRMTWFSLYRFHPINRLTTVFIDMGALLLFGFPLWVIFMNALLRHYYGLFIHANLPWTYGALGRLFVSPAMHRWHHVRNGEGVGSNFATVFSVFDQWFGTWYVPSSCGAPLGVTGGGHDSFLHQIFSPFARLFRLRRPSGVGSDAVP
>NZ_CP040434.1|WP_049416952.1|3611666_3612095_-|prepilin-type-N-terminal-cleavage/methylation-domain-containing-protein
MKNQKGFTLIELMIVVAIIAILAAIAIPAYQDYVVRSQAASALAEITPGKVGFEQATNEGKTPSTTATDAGFIGVAASTSYCNVAVTATTIACTTKNGNATKFNSKNITWTRDANSGLWSCSTSLDAKYRPGQCGAAAAPAP
>NZ_CP040434.1|WP_049416954.1|3612449_3613709_+|type-II-secretion-system-F-family-protein
MSVSGSAMKKEPVARSTTELQPFVWEGTDKRGVKMKGEQMAKNANLLRAELRRQGITPKAVKAKPKPIFGSTGSRITPKDIAFFSRQMATMMKSGVPIVSSLEIIGEGHKNLRMKRMIGTIRADIEGGSSLYEAISRHPVQFDELYRNLVRAGEGAGVLETVLDTVANYKENIETLKGKIKKALFYPIMVMAVAILVSGILLVWVVPQFEDVFKGFGAELPAFTQLIVGVSRFLVSWWWLILFTFVGAIVGFIAAYKRSPKLQHTMDRLILRVPVIGQIMHNSSIARFARTTAVTFKAGVPLVEALGIVAGATGNKVYEESVLRMRDDVSVGYPVNMAMKQLNLFPHMVIQMTGIGEEAGALDAMLFKVAEYYEQEVNNAVDALSSLLEPFIMVIIGGIVGSIVIGMYLPIFKLAGAVG
>NZ_CP040434.1|WP_005418626.1|3613712_3614576_+|prepilin-peptidase
MAFLDQHPGLGYPAAAALGLLLGSFLNVVILRLPKRLEWQWKRDAREVLEEPDFYEPPPPGIVVEPSHCPHCKHKLSWYENIPLFSWIIQGGKCRHCKAPISLQYPLVEALTSVLVLACVWQFGFGWQGFGAIVLTCFLIALSGIDLRTQLLPDQLTLPLMWLGLIGNIDNLYMPAKPALVGAAVGYLSLWMVWWLFKQLTGKEGMGHGDFKLLAALGAWCGLKGILPIILLSSVLGAIIGSIWLYTRGRDRATPIPFGPYLAIAGWLYFMWGAPVVEQYLVLSGLR

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Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP040434_3	3.1\|402626\|35\|NZ_CP040434\|CRT	402626-402660	35	NZ_CP015881	Ensifer adhaerens strain Casida A plasmid pCasidaAA, complete sequence	1657243-1657277	8	0.771
NZ_CP040434_3	3.1\|402626\|35\|NZ_CP040434\|CRT	402626-402660	35	NZ_CP030263	Ensifer adhaerens strain Corn53 plasmid AA, complete sequence	508283-508317	8	0.771
NZ_CP040434_3	3.4\|402794\|35\|NZ_CP040434\|CRT	402794-402828	35	ASHF01000034	Streptomyces sp. GBA 94-10 plasmid pGBA1, complete sequence, whole genome shotgun sequence	106755-106789	8	0.771
NZ_CP040434_3	3.1\|402626\|35\|NZ_CP040434\|CRT	402626-402660	35	NZ_CP032686	Rhizobium sp. CCGE531 plasmid pRCCGE531c, complete sequence	711126-711160	10	0.714
NZ_CP040434_3	3.1\|402626\|35\|NZ_CP040434\|CRT	402626-402660	35	NZ_CP032691	Rhizobium sp. CCGE532 plasmid pRCCGE532c, complete sequence	702433-702467	10	0.714
NZ_CP040434_3	3.1\|402626\|35\|NZ_CP040434\|CRT	402626-402660	35	CP000876	Herpetosiphon aurantiacus DSM 785 plasmid pHAU01, complete sequence	140700-140734	10	0.714

1. spacer 3.1|402626|35|NZ_CP040434|CRT matches to NZ_CP015881 (Ensifer adhaerens strain Casida A plasmid pCasidaAA, complete sequence) position: , mismatch: 8, identity: 0.771

cgtctttgccgacgcggctctcgaccaggccgatg	CRISPR spacer
cgtctttgccgatgcggatctcgaccgcgcggtcc	Protospacer
************.**** ********. ** * .

2. spacer 3.1|402626|35|NZ_CP040434|CRT matches to NZ_CP030263 (Ensifer adhaerens strain Corn53 plasmid AA, complete sequence) position: , mismatch: 8, identity: 0.771

cgtctttgccgacgcggctctcgaccaggccgatg	CRISPR spacer
cgtctttgccgatgcggatctcgaccgcgcggtcc	Protospacer
************.**** ********. ** * .

3. spacer 3.4|402794|35|NZ_CP040434|CRT matches to ASHF01000034 (Streptomyces sp. GBA 94-10 plasmid pGBA1, complete sequence, whole genome shotgun sequence) position: , mismatch: 8, identity: 0.771

tcttgccggtgcgtgcgcggtcggcaaccttcacc	CRISPR spacer
tggagtcggtgcgggcgcggccggcaaccttgagc	Protospacer
*   *.******* ******.********** * *

4. spacer 3.1|402626|35|NZ_CP040434|CRT matches to NZ_CP032686 (Rhizobium sp. CCGE531 plasmid pRCCGE531c, complete sequence) position: , mismatch: 10, identity: 0.714

cgtctttgccgacgcggctctcgaccaggccgatg	CRISPR spacer
cgtctttgcggacgcggatctcgacggcttcatcg	Protospacer
********* ******* ******* .  .*. .*

5. spacer 3.1|402626|35|NZ_CP040434|CRT matches to NZ_CP032691 (Rhizobium sp. CCGE532 plasmid pRCCGE532c, complete sequence) position: , mismatch: 10, identity: 0.714

cgtctttgccgacgcggctctcgaccaggccgatg	CRISPR spacer
cgtctttgcggacgcggatctcgacggcttcatcg	Protospacer
********* ******* ******* .  .*. .*

6. spacer 3.1|402626|35|NZ_CP040434|CRT matches to CP000876 (Herpetosiphon aurantiacus DSM 785 plasmid pHAU01, complete sequence) position: , mismatch: 10, identity: 0.714

cgtctttgccgacgcggctctcgaccaggccgatg	CRISPR spacer
tgacccgtccgacgcggctcgcgaccatgccgact	Protospacer
.* *..  ************ ****** *****.

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

283683 : 304300

Stenotrophomonas_phage(21.43%)

head,tail

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_111206535.1\|283683_284196_+\|head,tail	phage gp6-like head-tail connector protein	NA	NA	NA	NA
WP_111206533.1\|284192_284543_+\|head,tail	head-tail adaptor protein	NA	NA	NA	NA
WP_053494639.1\|284566_284923_+	DUF3168 domain-containing protein	NA	NA	NA	NA
WP_014645598.1\|284994_285654_+\|tail	tail protein	C4ML12	Xanthomonas_virus	1.2e-63	56.6
WP_014645599.1\|285653_285962_+	hypothetical protein	NA	NA	NA	NA
WP_014645600.1\|286012_286270_+	DUF1799 domain-containing protein	Q7Y5K1	Xanthomonas_virus	3.2e-09	36.4
WP_111206531.1\|286345_287710_+\|tail	phage tail protein	K7PM62	Enterobacteria_phage	2.5e-20	31.5
WP_049441818.1\|287706_288036_+\|tail	phage tail protein	C7BGC9	Burkholderia_phage	9.3e-22	54.5
WP_069118138.1\|288038_289205_+	hypothetical protein	A0A2P0VPG9	Ralstonia_phage	1.7e-25	33.8
WP_111206529.1\|289266_290418_+	hypothetical protein	Q2PGC1	Xanthomonas_oryzae_phage	5.1e-30	37.8
WP_111206527.1\|290449_291571_+	hypothetical protein	A0A0H4IPB2	Stenotrophomonas_phage	1.1e-37	33.7
WP_111206525.1\|291572_292025_+	hypothetical protein	NA	NA	NA	NA
WP_053494634.1\|292037_293177_+	hypothetical protein	A0A0H4IPB2	Stenotrophomonas_phage	2.4e-32	32.9
WP_111206523.1\|293219_294356_+	hypothetical protein	A0A0H4IPB2	Stenotrophomonas_phage	1.3e-75	50.2
WP_014645608.1\|294508_295204_+\|tail	phage minor tail protein L	A0A2R3UA90	Siphoviridae_environmental_samples	7.4e-93	67.1
WP_111206521.1\|295266_296007_+	NlpC/P60 family protein	A0A2R3UAR4	Siphoviridae_environmental_samples	5.8e-80	58.0
WP_111206519.1\|295999_296605_+\|tail	tail assembly protein	W0LI27	Edwardsiella_phage	6.9e-47	51.0
WP_111206517.1\|296601_300090_+	DUF1983 domain-containing protein	A0A2R3UA88	Siphoviridae_environmental_samples	0.0e+00	58.0
WP_049405458.1\|300089_300368_+	hypothetical protein	NA	NA	NA	NA
WP_032956264.1\|300369_301047_+	hypothetical protein	NA	NA	NA	NA
WP_111206516.1\|301275_301869_+	DUF1311 domain-containing protein	NA	NA	NA	NA
WP_111206514.1\|301894_304300_+	peptidoglycan-binding protein	S5VZH2	Pseudomonas_phage	5.8e-28	38.7

DBSCAN-SWA_2

624049 : 630318

Enterobacteria_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_111205543.1\|624049_625105_+	dTDP-glucose 4,6-dehydratase	I7HTA3	Enterobacteria_phage	5.6e-84	47.7
WP_053494803.1\|625119_626007_+	glucose-1-phosphate thymidylyltransferase RfbA	I7I009	Enterobacteria_phage	1.8e-96	58.2
WP_053494804.1\|626003_626561_+	dTDP-4-dehydrorhamnose 3,5-epimerase	I7HJC4	Enterobacteria_phage	1.3e-44	50.0
WP_111205542.1\|626557_627451_+	dTDP-4-dehydrorhamnose reductase	A0A1D7XFA3	Escherichia_phage	4.1e-27	36.0
WP_053494806.1\|627554_628958_-	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	A0A1V0SH58	Hokovirus	6.5e-48	28.9
WP_053494807.1\|628971_630318_-	phosphomannomutase/phosphoglucomutase	A0A127AWJ1	Bacillus_phage	1.3e-29	26.5

DBSCAN-SWA_3

3174658 : 3189994

Xanthomonas_virus(57.14%)

tail

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_111206021.1\|3174658_3182947_-\|tail	phage tail protein	I7HDJ4	Xanthomonas_virus	4.9e-10	47.8
WP_014647904.1\|3182937_3183333_-	hypothetical protein	Q2NPH1	Xanthomonas_virus	5.2e-27	47.4
WP_014647905.1\|3183332_3183794_-	DUF1833 domain-containing protein	I7GYA2	Xanthomonas_virus	1.1e-36	50.3
WP_014647906.1\|3183790_3184144_-	hypothetical protein	I7H418	Xanthomonas_virus	4.8e-16	39.0
WP_069116152.1\|3184140_3186456_-\|tail	phage tail tape measure protein	A0A2R3UAA7	Siphoviridae_environmental_samples	5.0e-37	33.2
WP_041863668.1\|3186550_3186769_-	hypothetical protein	NA	NA	NA	NA
WP_014647908.1\|3186873_3187218_-	hypothetical protein	G9FHI3	Rhodococcus_phage	7.5e-22	50.0
WP_014037992.1\|3187217_3187676_-	hypothetical protein	NA	NA	NA	NA
WP_032957503.1\|3188041_3188713_+	dienelactone hydrolase family protein	NA	NA	NA	NA
WP_014647910.1\|3188709_3189132_+	HIT family protein	NA	NA	NA	NA
WP_014037995.1\|3189421_3189994_-	dCTP deaminase	S5VM63	Pseudomonas_phage	4.5e-72	70.2

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP040434

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CRISPR-Cas detection and classification

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection