CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP045766	Salmonella bongori CFSAN000510 strain SGSC 3100 chromosome, complete genome	2 crisprs	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,DinG,cas14j	1	15	4	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP045766_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP045766_1

1923721-1924786

TypeI-E

I-E

Consensus_repeat	Method
GTGTTCCCCGCGCCAGCGGGGATAAACCG	PILER-CR
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CRISPRCasFinder
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CRT

17 spacers

cas3,cas8e,cse2gr11,cas7,cas5

The CRISPR arrays of NZ_CP045766_1

>merge|NZ_CP045766|1|1923721-1924786|PILER-CR,CRISPRCasFinder,CRT
GTGTTCCCCGCGCCAGCGGGGATAAACCGCGGCAACCGACCCATCTGGAGGTACTGAAAATGTGTTCCCCGCGCCAGCGGGGATAAACCGGGCGGATACCGCTAATAAAATGCTAAAACAGCGTGTTCCCCGCGCCAGCGGGGATAAACCGGCCATTAACCGTGCGTTGCGTCAGGTTGATCCGTGTTCCCCGCGCCAGCGGGGATAAACCGTCTAATCAGTATAATGAAGAGACTTTAATTAAGTGTTCCCCGCGCCAGCGGGGATAAACCGACAATTCAGGACGTGCTGATTTCTGGGCTGGTGTGTTCCCCGCGCCAGCGGGGATAAACCGTTATTCCTGAAAATCCTAATCTTCTATTTGTAGTGTTCCCCGCGCCAGCGGGGATAAACCGAGTCATAAAATTCGGCGCATACGATAACTTTTGTGTTCCCCGCGCCAGCGGGGATAAACCGAGCGAGTTCATTATAAATATCATGGTTGCCGCGTGTTCCCCGCGCCAGCGGGGATAAACCGTACCCACGCGCAGCACGCCAATTTACGTAGTTGTGTTCCCCGCGCCAGCGGGGATAAACCGGTTCGCCCTCGGCCAGCGTGTAAAACTTGATTGTGTTCCCCGCGCCAGCGGGGATAAACCGCCAATAATTAAACGTTGCATTTGTTGCTTCGGGTGTTCCCCGCGCCAGCGGGGATAAACCGTTTTTTTTGTTTTATCAGGGCTACGCTATAAAGTGTTCCCCGCGCCAGCGGGGATAAACCGGAATATCACATGAAATGTCAGGAACGCCTTTTGTGTTCCCCGCGCCAGCGGGGATAAACCGATGTACGCCAAATTTTCGCAAGTCATCGATCAGTGTTCCCCGCGCCAGCGGGGATAAACCGGAAACAGTTACGCATCCGCTGTTTCCTGCTGGGTGTTCCCCGCGCCAGCGGGGATAAACCGCTTCCGGATCATCCTTTGGTAACGGCTCTGACGTGTTCCCCGCGCCAGCGGGGATAAACCGGCAGATGAAAAATACTGCGGTTGGGTGCCCTCGTGTTCCCCGCGCCAGCGGGGATAAATCG

>NZ_CP045766|1|1|1923721-1924725|PILER-CR
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGGCAACCGACCCATCTGGAGGTACTGAAAAT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GGCGGATACCGCTAATAAAATGCTAAAACAGC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCCATTAACCGTGCGTTGCGTCAGGTTGATCC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TCTAATCAGTATAATGAAGAGACTTTAATTAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ACAATTCAGGACGTGCTGATTTCTGGGCTGGT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TTATTCCTGAAAATCCTAATCTTCTATTTGTA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AGTCATAAAATTCGGCGCATACGATAACTTTT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AGCGAGTTCATTATAAATATCATGGTTGCCGC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TACCCACGCGCAGCACGCCAATTTACGTAGTT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GTTCGCCCTCGGCCAGCGTGTAAAACTTGATT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CCAATAATTAAACGTTGCATTTGTTGCTTCGG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TTTTTTTTGTTTTATCAGGGCTACGCTATAAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GAATATCACATGAAATGTCAGGAACGCCTTTT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ATGTACGCCAAATTTTCGCAAGTCATCGATCA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GAAACAGTTACGCATCCGCTGTTTCCTGCTGG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CTTCCGGATCATCCTTTGGTAACGGCTCTGAC
GTGTTCCCCGCGCCAGCGGGGATAAACCG

>NZ_CP045766|1|1|1923721-1924786|CRISPRCasFinder
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGGCAACCGACCCATCTGGAGGTACTGAAAAT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GGCGGATACCGCTAATAAAATGCTAAAACAGC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCCATTAACCGTGCGTTGCGTCAGGTTGATCC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TCTAATCAGTATAATGAAGAGACTTTAATTAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ACAATTCAGGACGTGCTGATTTCTGGGCTGGT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TTATTCCTGAAAATCCTAATCTTCTATTTGTA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AGTCATAAAATTCGGCGCATACGATAACTTTT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AGCGAGTTCATTATAAATATCATGGTTGCCGC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TACCCACGCGCAGCACGCCAATTTACGTAGTT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GTTCGCCCTCGGCCAGCGTGTAAAACTTGATT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CCAATAATTAAACGTTGCATTTGTTGCTTCGG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TTTTTTTTGTTTTATCAGGGCTACGCTATAAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GAATATCACATGAAATGTCAGGAACGCCTTTT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ATGTACGCCAAATTTTCGCAAGTCATCGATCA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GAAACAGTTACGCATCCGCTGTTTCCTGCTGG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CTTCCGGATCATCCTTTGGTAACGGCTCTGAC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCAGATGAAAAATACTGCGGTTGGGTGCCCTC
GTGTTCCCCGCGCCAGCGGGGATAAATCG

>NZ_CP045766|1|1|1923721-1924786|CRT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGGCAACCGACCCATCTGGAGGTACTGAAAAT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GGCGGATACCGCTAATAAAATGCTAAAACAGC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCCATTAACCGTGCGTTGCGTCAGGTTGATCC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TCTAATCAGTATAATGAAGAGACTTTAATTAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ACAATTCAGGACGTGCTGATTTCTGGGCTGGT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TTATTCCTGAAAATCCTAATCTTCTATTTGTA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AGTCATAAAATTCGGCGCATACGATAACTTTT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AGCGAGTTCATTATAAATATCATGGTTGCCGC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TACCCACGCGCAGCACGCCAATTTACGTAGTT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GTTCGCCCTCGGCCAGCGTGTAAAACTTGATT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CCAATAATTAAACGTTGCATTTGTTGCTTCGG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TTTTTTTTGTTTTATCAGGGCTACGCTATAAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GAATATCACATGAAATGTCAGGAACGCCTTTT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ATGTACGCCAAATTTTCGCAAGTCATCGATCA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GAAACAGTTACGCATCCGCTGTTTCCTGCTGG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CTTCCGGATCATCCTTTGGTAACGGCTCTGAC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCAGATGAAAAATACTGCGGTTGGGTGCCCTC
GTGTTCCCCGCGCCAGCGGGGATAAATCG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP045766.1\|WP_000036734.1\|1920955_1922254_+\|phosphopyruvate-hydratase	unknown	unknown	gnl\|CDD\|234617
NZ_CP045766.1\|WP_000706495.1\|1910431_1911574_+\|glycerate-kinase	unknown	unknown	gnl\|CDD\|376844
NZ_CP045766.1\|WP_000085113.1\|1938082_1938829_+\|type-I-E-CRISPR-associated-protein-Cas5/CasD	cas5	cd09645_cas5_CAS-I-E	gnl\|CDD\|187776
NZ_CP045766.1\|WP_024135102.1\|1932220_1934884_+\|CRISPR-associated-helicase/endonuclease-Cas3	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|224124
NZ_CP045766.1\|WP_001145525.1\|1930830_1931784_-\|SPI-1-type-III-secretion-system-effector-SopD	unknown	unknown	gnl\|CDD\|185277
NZ_CP045766.1\|WP_001143356.1\|1925741_1926104_-\|6-carboxytetrahydropterin-synthase-QueD	unknown	unknown	gnl\|CDD\|238264
NZ_CP045766.1\|WP_001275831.1\|1909012_1910353_+\|glucarate-dehydratase	unknown	unknown	gnl\|CDD\|211799
NZ_CP045766.1\|WP_079775123.1\|1911703_1914460_-\|two-component-sensor-histidine-kinase-BarA	unknown	unknown	gnl\|CDD\|236848
NZ_CP045766.1\|WP_000211332.1\|1926410_1928210_+\|NADPH-dependent-assimilatory-sulfite-reductase-flavoprotein-subunit	unknown	unknown	gnl\|CDD\|182862
NZ_CP045766.1\|WP_001199954.1\|1922758_1923430_+\|7-carboxy-7-deazaguanine-synthase-QueE	unknown	unknown	gnl\|CDD\|275126
NZ_CP045766.1\|WP_024135104.1\|1907651_1908992_+\|glucarate-dehydratase	unknown	unknown	gnl\|CDD\|211799
NZ_CP045766.1\|WP_001096609.1\|1930005_1930740_+\|phosphoadenosine-phosphosulfate-reductase	unknown	unknown	gnl\|CDD\|234997
NZ_CP045766.1\|WP_000226832.1\|1915864_1918099_+\|GTP-diphosphokinase	unknown	unknown	gnl\|CDD\|182797
NZ_CP045766.1\|WP_001290677.1\|1928209_1929922_+\|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit	unknown	unknown	gnl\|CDD\|237402
NZ_CP045766.1\|WP_024135103.1\|1918216_1919008_+\|nucleoside-triphosphate-pyrophosphohydrolase	unknown	unknown	gnl\|CDD\|236569
NZ_CP045766.1\|WP_000210866.1\|1919235_1920873_+\|CTP-synthase-(glutamine-hydrolyzing)	unknown	unknown	gnl\|CDD\|235437
NZ_CP045766.1\|WP_001028359.1\|1936448_1937003_+\|type-I-E-CRISPR-associated-protein-Cse2/CasB	cse2gr11	cd09731_cse2gr11_CAS-I-E	gnl\|CDD\|187862
NZ_CP045766.1\|WP_000206422.1\|1937016_1938072_+\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	cas7	pfam09344_cas7_CAS-I-E	gnl\|CDD\|273843
NZ_CP045766.1\|WP_000046873.1\|1914517_1915813_+\|23S-rRNA-(uracil(1939)-C(5))-methyltransferase-RlmD	unknown	unknown	gnl\|CDD\|237291
NZ_CP045766.1\|WP_000834842.1\|1934895_1936452_+\|type-I-E-CRISPR-associated-protein-Cse1/CasA	cas8e	cd09669_cas8e_CAS-I-E	gnl\|CDD\|274192

Protein	Function_ID	Function_description	E-value
NZ_CP045766.1\|WP_000036734.1\|1920955_1922254_+\|phosphopyruvate-hydratase	gnl\|CDD\|234617	PRK00077, eno, enolase; Provisional.	0
NZ_CP045766.1\|WP_000706495.1\|1910431_1911574_+\|glycerate-kinase	gnl\|CDD\|376844	pfam02595, Gly_kinase, Glycerate kinase family. This is family of Glycerate kinases.	0
NZ_CP045766.1\|WP_000085113.1\|1938082_1938829_+\|type-I-E-CRISPR-associated-protein-Cas5/CasD	gnl\|CDD\|187776	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas5 is a RAMP superfamily protein; Subunit of the Cascade complex.	7.02999e-47
NZ_CP045766.1\|WP_024135102.1\|1932220_1934884_+\|CRISPR-associated-helicase/endonuclease-Cas3	gnl\|CDD\|224124	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms].	6.5508e-171
NZ_CP045766.1\|WP_001145525.1\|1930830_1931784_-\|SPI-1-type-III-secretion-system-effector-SopD	gnl\|CDD\|185277	PRK15379, PRK15379, type III secretion system effector SopD.	0
NZ_CP045766.1\|WP_001143356.1\|1925741_1926104_-\|6-carboxytetrahydropterin-synthase-QueD	gnl\|CDD\|238264	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS). Folate derivatives are essential cofactors in the biosynthesis of purines, pyrimidines, and amino acids, as well as formyl-tRNA. Mammalian cells are able to utilize pre-formed folates after uptake by a carrier-mediated active transport system. Most microbes and plants lack this system and must synthesize folates de novo from guanosine triphosphate. One enzyme from this pathway is PTPS which catalyzes the conversion of dihydroneopterin triphosphate to 6-pyruvoyl tetrahydropterin. The functional enzyme is a hexamer of identical subunits.	4.20305e-57
NZ_CP045766.1\|WP_001275831.1\|1909012_1910353_+\|glucarate-dehydratase	gnl\|CDD\|211799	TIGR03247, glucar-dehydr, glucarate dehydratase. Glucarate dehydratase converts D-glucarate (and L-idarate, a stereoisomer) to 5-dehydro-4-deoxyglucarate which is subsequently acted on by GarL, tartronate semialdehyde reductase and glycerate kinase (GenProp0716). The E. coli enzyme has been well-characterized.	0
NZ_CP045766.1\|WP_079775123.1\|1911703_1914460_-\|two-component-sensor-histidine-kinase-BarA	gnl\|CDD\|236848	PRK11107, PRK11107, hybrid sensory histidine kinase BarA; Provisional.	0
NZ_CP045766.1\|WP_000211332.1\|1926410_1928210_+\|NADPH-dependent-assimilatory-sulfite-reductase-flavoprotein-subunit	gnl\|CDD\|182862	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit.	0
NZ_CP045766.1\|WP_001199954.1\|1922758_1923430_+\|7-carboxy-7-deazaguanine-synthase-QueE	gnl\|CDD\|275126	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE. Members of this radical SAM domain protein family appear to be the E. coli form of the queuosine biosynthesis protein QueE. QueE is involved in making preQ0 (7-cyano-7-deazaquanine), a precursor of both the bacterial/eukaryotic modified tRNA base queuosine and the archaeal modified base archaeosine. Members occur in species that lack known forms of QueE but usually are not found in queuosine biosynthesis operons. Members of this family tend to form bi-directional best hit matches to members of known (TIGR03365) and putative (TIGR03963) QueE families from other lineages.	7.94881e-156
NZ_CP045766.1\|WP_024135104.1\|1907651_1908992_+\|glucarate-dehydratase	gnl\|CDD\|211799	TIGR03247, glucar-dehydr, glucarate dehydratase. Glucarate dehydratase converts D-glucarate (and L-idarate, a stereoisomer) to 5-dehydro-4-deoxyglucarate which is subsequently acted on by GarL, tartronate semialdehyde reductase and glycerate kinase (GenProp0716). The E. coli enzyme has been well-characterized.	0
NZ_CP045766.1\|WP_001096609.1\|1930005_1930740_+\|phosphoadenosine-phosphosulfate-reductase	gnl\|CDD\|234997	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase.	1.96458e-136
NZ_CP045766.1\|WP_000226832.1\|1915864_1918099_+\|GTP-diphosphokinase	gnl\|CDD\|182797	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional.	0
NZ_CP045766.1\|WP_001290677.1\|1928209_1929922_+\|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit	gnl\|CDD\|237402	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit.	0
NZ_CP045766.1\|WP_024135103.1\|1918216_1919008_+\|nucleoside-triphosphate-pyrophosphohydrolase	gnl\|CDD\|236569	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed.	2.53214e-158
NZ_CP045766.1\|WP_000210866.1\|1919235_1920873_+\|CTP-synthase-(glutamine-hydrolyzing)	gnl\|CDD\|235437	PRK05380, pyrG, CTP synthetase; Validated.	0
NZ_CP045766.1\|WP_001028359.1\|1936448_1937003_+\|type-I-E-CRISPR-associated-protein-Cse2/CasB	gnl\|CDD\|187862	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Small alpha-helical protein; also known as Cse2/CasB/YgcK family; specific gene for I-E subtype;.	1.76417e-31
NZ_CP045766.1\|WP_000206422.1\|1937016_1938072_+\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	gnl\|CDD\|273843	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family is represented by CT1975 of Chlorobium tepidum and is part of the Ecoli subtype of CRISPR/Cas locis. It is designated Cse4, for CRISPR/Cas Subtype Ecoli protein 4.	3.56056e-138
NZ_CP045766.1\|WP_000046873.1\|1914517_1915813_+\|23S-rRNA-(uracil(1939)-C(5))-methyltransferase-RlmD	gnl\|CDD\|237291	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD.	0
NZ_CP045766.1\|WP_000834842.1\|1934895_1936452_+\|type-I-E-CRISPR-associated-protein-Cse1/CasA	gnl\|CDD\|274192	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model family, represented by CT1972 from Chlorobium tepidum, is found in Ecoli subtype CRISPR/Cas regions of many bacteria, most of which are mesophiles, and not in Archaea. It is designated Cse1.	2.83189e-175

>NZ_CP045766.1|WP_001199954.1|1922758_1923430_+|7-carboxy-7-deazaguanine-synthase-QueE
MQYPINEMFQTLQGEGYFTGVPAIFIRLQGCPVGCAWCDTKHTWDKLEDREVSLYSILAKTKESDKWGAASSEDLLAVISRQGYTARHVVITGGEPCIHDLMPLTSLLEKNGFSCQIETSGTHEVRCTPNTWVTVSPKVNMRGGYGVLYQALERANEIKHPVGRVRDIEALDELLATLSDDKPRVIALQPISQKEDATRLCIDTCIARNWRLSMQTHKYLNIA
>NZ_CP045766.1|WP_000036734.1|1920955_1922254_+|phosphopyruvate-hydratase
MSKIVKVIGREIIDSRGNPTVEAEVHLEGGFVGMAAAPSGASTGSREALELRDGDKSRFLGKGVTKAVGAVNGPIAQAILGKDAKDQAGIDKIMIDLDGTENKSNFGANAILAVSLANAKAAAAAKGMPLYEHIAELNGTPGKYSMPVPMMNIINGGEHADNNVDIQEFMIQPVGAKTVKEAIRMGSEVFHHLAKVLKGKGMNTAVGDEGGYAPNLGSNAEALAVIAEAVKAAGYELGKDITLAMDCAASEFYKDGKYVLAGEGNKAFTSEEFTHFLEELTKQYPIVSIEDGLDESDWDGFAYQTKVLGDKIQLVGDDLFVTNTKILKEGIEKGIANSILIKFNQIGSLTETLAAIKMAKDAGYTAVISHRSGETEDATIADLAVGTAAGQIKTGSMSRSDRVAKYNQLIRIEEALGEKAPYNGRKEIKGQA
>NZ_CP045766.1|WP_000210866.1|1919235_1920873_+|CTP-synthase-(glutamine-hydrolyzing)
MTTNYIFVTGGVVSSLGKGIAAASLAAILEARGLNVTIMKLDPYINVDPGTMSPIQHGEVFVTEDGAETDLDLGHYERFIRTKMSRRNNFTTGRIYSDVLRKERRGDYLGATVQVIPHITNAIKERVLEGGEGHDVVLVEIGGTVGDIESLPFLEAIRQLAVDIGREHALFMHLTLVPYLAAAGEVKTKPTQHSVKELLSIGIQPDILICRSDRAVPANERAKIALFCNVPEKAVISMKDVDSIYKIPGLLKSQGLDDYICKRFSLNCPEANLSEWEQVIYEEANPAGEVTIGMVGKYIELPDAYKSVIEALKHGGLKNRVTVNIKLIDSQDVETRGVEILKDLDAILIPGGFGYRGVEGKIATARYARENNIPYLGICLGMQVALIEFARNVAGMDNANSTEFVPDCKYPVVALITEWRDEDGNVEVRSEKSDLGGTMRLGAQQCQLTDDSLVRQLYGAPTIVERHRHRYEVNNMLLKQIEAAGLRVAGRSGDDQLVEIIEVPNHPWFVACQFHPEFTSTPRDGHPLFAGFVKAASEHQKRQAK
>NZ_CP045766.1|WP_024135103.1|1918216_1919008_+|nucleoside-triphosphate-pyrophosphohydrolase
MNQIDRLLNIMQRLRDPENGCPWDKEQTFASIAPYTLEETYEVLDAIAREDFDDLRGELGDLLFQVVFYAQMAQEEGRFDFNAICAAISDKLERRHPHVFGKISADSSEEVLTRWEQIKTEERAQKAQHSALDDIPRSLPALMRAQKIQKRCSNVGFDWTTLGPVVDKVYEEIDEVMFEARQAVIDQAKLEEEMGDLLFATVNMARHLGTKAEIALQKANDKFERRFREVERIVAARGLQMTGVDLETMEEVWQEVKRQEIDL
>NZ_CP045766.1|WP_000226832.1|1915864_1918099_+|GTP-diphosphokinase
MVAVRSAHINKAGEFDPKKWIASLGISSQQSCERLAETWAYCLQQTQGHPDADLLLWRGVEMVEILSTLSMDIDTLRAALLFPLADANVVSEDVLRESVGKSIVTLIHGVRDMAAIRQLNATHNDSVSSEQVDNVRRMLLAMVDDFRCVVIKLAERIAHLREVKDAPEDERVLAAKECTNIYAPLANRLGIGQLKWELEDYCFRYLHPAEYKRIAKLLHERRIDREHYIEEFVGHLRAEMKNEGVLAEVYGRPKHIYSIWRKMQKKHLAFDELFDVRAVRIVAERLQDCYAALGIVHTHYRHLPDEFDDYVANPKPNGYQSIHTVVLGPGGKTVEIQIRTKQMHEDAELGVAAHWKYKEGATSGGVRSGHEDRIAWLRKLIAWQEEMADSGEMLDEVRSQVFDDRVYVFTPKGDVVDLPAGSTPLDFAYHIHSDVGHRCIGAKIGGRIVPFTYQLQMGDQVEIITQKQPNPSRDWLNPNLGYITTSRGRSKIHAWFRKQDRDKNILAGRQILDDELAHLGISLKEAEKHLLPRYNFNELEELLAAIGGGDIRLNQMVNFLQSQFNKPSAEEQDAAALKQLQQKTYAPQNRRKDDGRVVVEGVGNLMHHIARCCQPIPGDEIVGFITQGRGISVHRADCEQLAELRSHAPERIVDAVWGESYSAGYSLVVRVTANDRSGLLRDITTILANEKVNVLGVASRSDIKQQIATIDMTIEIYNLQVLGRVLGKLNQVPDVIDARRLHGN
>NZ_CP045766.1|WP_000046873.1|1914517_1915813_+|23S-rRNA-(uracil(1939)-C(5))-methyltransferase-RlmD
MAQFYSAKRRVTTRQIITVTVNDLDPFGQGVARHNGKALFIPGLLPEESADVIITEDKKQFARARVSSRLNDSPERELPRCPHFGVCGGCQQQHVSVALQQRSKSAALARLMKHEVNDIIAGEPWGYRRRARLSLNCPPDKSLQMGFRQAGSSDIVNVEQCPVLVPQLEALLPRVRACLASLQGTRHLGHVELVQAGNGTLMILRHTAPLSASDKEKLERFSHSEGLSLFLAPFSEILETVIGEAPWYDSHGLRLAFSPRDFIQVNEAVNQQMVARALEWLDVRAADRVLDLFCGMGNFTLPLATCAASVVGVEGVPALVEKARENAIRNELHNVTFFHENLEEDVTKQPWAKNGFDKVLLDPARAGAAGVMRHIIKLKPIRIVYVSCNPATLARDSEVLVNAGYEVTRLAMLDMFPHTGHLESMVLFERM
>NZ_CP045766.1|WP_079775123.1|1911703_1914460_-|two-component-sensor-histidine-kinase-BarA
MTNYSLRARMMILILAPTVLIGLLLSIFFVVHRYNDLQRQLEDAGASIIEPLAVSSEYGMNLQNRESIGQLISVLHRRHSDIVRAISVYDDHNRLFVTSNFHLDPSQMQLPAGAPFPRRLSVDRHGDIMILRTPIISESYSPDESAIADAKSTHNMLGYVALELDLKSVRLQQYKEIFISSVMMFFCIGIALIFGWRLMRDVTGPIRNMVNTVDRIRRGQLDSRVEGFMLGELDMLKNGINSMAMSLAAYHEEMQHNIDQATSDLRETLEQMEIQNVELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELNPTQRDHLNTIERSANNLLAIINDVLDFSKLEAGKLILESIPFPLRNTLDEVVTLLAHSSHDKGLELTLNIKNDVPDNVIGDPLRLQQVITNLVGNAIKFTESGNIDILVEKRALSNTKVQIEVQIRDTGIGIPERDQSRLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWFHINLDLNPNVIIDGPSTECLAGKRLAYIEPNATAAQCTLDLLNDTPVEVVYSPAFSALPLAHYDIMILSVPVTFREPLTMQHERLAKAASMTDFLLLALPCHAQINAEKLKQGGAAACLLKPLTSTRLLPALTEYCQLKHHAEPLLMDTSKIAMTVMAVDDNPANLKLIGALLEDKVQHVELCDSGHQAVDRAKQMQFDLILMDIQMPDMDGIRACELIHQLPHQQQTPVIAVTAHAMAGQKEKLLSAGMNDYLAKPIEEEKLHNLLLRYKPGTNVTTRLMAPEPAEFIFNPNATLDWQLALRQAAGKPDLARDMLQMLIDFLPEVRNKIEEQLVGENPDGLVDLIHKLHGSCGYSGVPRMKNLCQLIEQQLRNDVREEELEPEFLELLDEMDNVAREAKKILG
>NZ_CP045766.1|WP_000706495.1|1910431_1911574_+|glycerate-kinase
MKIVIAPDSYKESLSALEVATAIEQGFREIWPDADYLKLPMADGGEGTVEAMVEATAGRIVHVDVTGPLGHRVNAFYGLSGDARCAFIEMAAASGLEQVPLAQRDPLNTTSWGTGELIRHALDAGVEHIIIGIGGSATNDGGAGMMQALGARLRDVHGNDIAQGGIGLEALASIDISGLDKRLSACRIDVACDVTNPLTGKEGASAIFGPQKGATPEMIERLDNALIRYAHLIARDLHVDVLGLVGGGAAGGMGAALYAFCGAQLRRGIEIVTDALHLEERLADADLVITGEGRIDSQTLHGKVPIGVAGIAKRHNKPVIGIAGSLTADVGVVHGYGLDAVFSVIYTICTLEDALENAAENVRMTARNVAATLKTGQHLR
>NZ_CP045766.1|WP_001275831.1|1909012_1910353_+|glucarate-dehydratase
MSAQFTTPVVTSMQVIPVAGHDSMLMNLSGAHAPFFTRNIVIIKDNAGHTGVGEIPGGEKIRKTLEEAIPLVVGKTLGEYKNVLTAVRNQFADRDAGGRGLQTFDLRTTIHVVTGIEAAMLDLLGQHLGVNVASLLGDGQQRSEVEMLGYLFFVGNRKATPLPYQSQTEEKCDWYRLRHEEAMTPETVVRLAEAAYEKYGFNDFKLKGGVLAGEEEAESIVALAKRFPNARVTLDPNGAWSLNEAIQIGKYLKGTLAYAEDPCGAEQGFSGREVMAEFRRATGLPTATNMIATDWRQMGHTLSLQSVDIPLADPHFWTMQGSVRVAQMCHEFGLTWGSHSNNHFDISLAMFTHVAAAAPGKITAIDTHWIWQEGNQRLTKEPFEIKGGMVQVPAKPGLGVEIDMDQVMKAHELYQKHGLGARDDAMGMQYLIPGWTFDNKRPCMVR
>NZ_CP045766.1|WP_024135104.1|1907651_1908992_+|glucarate-dehydratase
MNTQSSPIITDMKVIPIAGHDSMLLNIGGAHNAWFTRNIVVLTDNAGHTGVGEAPGGDVIYQTLMDAIPMVLGQEVARLNHVVQRVHKGNQAADFDTFGKGAWTFELRVNAVAALEAALLDLLGQTLNVPVCELLGPGKQRDAVTVLGYLFYIGDRAKTDLPYLDNTPGHHDWYRLRHQEALSSDAVVRLAEASQDRYGFKDFKLKGGVLPGEQEIATVRALKKRFPEARITVDPNGAWRLDEAIALCKGLNDVLAYAEDPCGAEPGFSGREVMAEFRRATGLPVATNMIATNWREMGHAVMLNAVDIPLADPHFWTLSGAVRVAQLCDDWGLTWGCHSNNHFDISLAMFTHVGAAAPGKPTAIDTHWIWQEGDCRLTKNPLEIKNGAIAVPDAPGLGVELDWEQVQKAHDAYKKLPGGARNDAGPMQYLIPGWTFDRKRPVFGRH
>NZ_CP045766.1|WP_001143356.1|1925741_1926104_-|6-carboxytetrahydropterin-synthase-QueD
MPTTLYKDFTFEAAHRLPHVPEGHKCGRLHGHSFMVRLEITGEVDPHTGWIMDFADLKAAFKPTYDRLDHYYLNDIPGLENPTSEVLAKWIWDQVKPVVPLLSAVQVKETCTAGCVYRGA
>NZ_CP045766.1|WP_000211332.1|1926410_1928210_+|NADPH-dependent-assimilatory-sulfite-reductase-flavoprotein-subunit
MTTQAPLTGLLPLNAEQLARLQAATTDLTPEQLAWVSGYFWGVLNPRPDTITTLPAPVAEIPGVTLISASQTGNARRVAEALRDDLLAVNLNVTLVNAGDYKYKQIASEKLLVVVTSTQGEGEPPEEAVALHKFLFSKKAPALKNTAFAVFSLGDTSYEFFCQAGKDFDSKLAELGGKRLLDRVDADVEYQSAAAQWRARMVEVLRSRTPVMTPAQSVTSGAVNEIHTSPYTKEAPLSASLAVNQKITGRNSEKDVRHIEIDLGDSGLCYQPGDALGVWYQNDPALVNEIVELLWLKGDEPVTVNDKRLPLSEALQWHFELTVNTANIVETYATLTRSETLMPLVGDKTQLQRYAAATPIVDMLRFSPAQLEADALVGLLRPLTPRLYSIASSQAEVGNEAHITVGVVRYDIEGRARAGGASSFLADRVEEDGEVRVFIEHNDNFRLPEEPQTPVIMIGPGTGIAPFRAFMQQRAADDAPGKNWLFFGNPHFTEDFLYQVEWQRYVKEGVLSRIDLAWSRDQKEKIYVQDKLREQGAELWRWINDGAHIYVCGDANRMAKDVEQVLLEVIAEFGGMDLESADEYLSELRVERRYQRDVY
>NZ_CP045766.1|WP_001290677.1|1928209_1929922_+|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit
MSEKHPGPLVVEGKLSDAERMKRESNYLRGTIAEDLNDGLTGGFKGDNFLLIRFHGMYQQDDRDIRAERTEQKLEPRHAMLLRCRLPGGVISTTQWKAIDKFAAENTIYGSIRLTNRQTFQFHGILKKNVKPVHQMLHSVGLDALATANDMNRNVLCTSNPYESQLHAEAYEWAKKISEHLLPRTRAYAEIWLDQEKVATTDEEPILGQTYLPRKFKTTVVIPPQNDIDLHANDMNFVAVAENGRLVGFNLLVGGGLSIEHGNKKTYARTASEFGYLPLEHTLAVAEAVVTTQRDWGNRTDRKNAKTKYTLERVGIDTFKEEVERRAGIKFEPIRPYEFTGRGDRIGWVKGIDNNWHLTLFIENGRILDYPGRPLKTGLLEIAKIHQGEFRITANQNLIIAGVPESEKTKIEKLARDHGLMNAVTAQRENAMACVSFPTCPLAMAEAERFLPTFIDKVEAIMASHGVSDEHIVLRVTGCPNGCGRAMLAEVGLVGKAPGRYNLHLGGNRIGTRIPRMYKENITESDILASLDELIGRWAKEREAGEGFGDFTVRAGIVRPVLDPARDFWE
>NZ_CP045766.1|WP_001096609.1|1930005_1930740_+|phosphoadenosine-phosphosulfate-reductase
MAKLSLSALNERPKVDRVLALAETNAALETLSAEERIVWALENLPGEYVLSSSFGIQAAVSLHLVNQVYPGIPVILTDTGYLFAETYQFIDELTEKLNLNLKVYRAKESAAWQEARYGKLWEQGIEGIEKYNDINKVEPLNRALHELSAQTWFAGLRREQSGSRATLPVLAIQRGVFKVLPIIDWDNRTVFQYLQKHGLKYHPLWDQGYLSVGDTHTTRKWEPGMAEEETRFFGLKRECGLHEG
>NZ_CP045766.1|WP_001145525.1|1930830_1931784_-|SPI-1-type-III-secretion-system-effector-SopD
MPVTLHFGNQQNYMLNETRLAQLLSADKEKATHRGYWNKLQDHFTSEKQDHALEVLHGMLYGHARNEPGEMEINVEGMSKIYAFKHLQRLACPADQDLFRIQMDASQTQLLFMIGDTVISQSSIQDTLNLSENAVVKSMDRAERELFLKICEMIGSTITWHADLLQGSASTLRKEVAGNAQIKEAVYKMMRPDEAPDHRLVEWRGSLTEKEESILACINADSFDIITQFCKLGYREVQSEVSFFMIHPCITYLLHSYSPITEFKETNTAFLNNFNQDYDNYHSNKRDIDPILEEIYLTHEHSLHIGKNNCSRNILML
>NZ_CP045766.1|WP_024135102.1|1932220_1934884_+|CRISPR-associated-helicase/endonuclease-Cas3
MLIYHYWGKSRQGEASGGDDYHLLCWHSLDVAAVGYWMVKNNIYFIDHYLKKLGLQDNEQAAQFFAWILCWHDIGKFAHSFQQLYRHEDLNIFNEPPGHYEKIPHTTLGYWLWNTWLSECPELFPPSSLSVRKSKRVMTLWMPVTTGHHGRPPDAIPEVDHFRQQDKDAAREFLLKIKALFPLITLPEAWDEDEGIAQFQQLSWFISATVVLADWTGSASHYFPRMAEKMPVEMYWQQALIKARKAITLFPTAANVSAFTGIETLFPFIQHPTPLQQKALTLDIHVDGAQLFILEDVTGAGKTEAALILAHRLMAAGKAQGLYFGLPTMATANAMFERMANSWLALYQPDSRPSLVLAHSARHLMDRFNQSIWSASLSGTEEPDDASPYSQGCAAWFTDSNKKALLAEVGVGTLDQAMMAVMPFKHNNLRLLGLSNKILLADEIHACDAWMSRILEGLIECQASNGNATILLSATLSQQQRDKLVAAFSRGVKRSVQAPLLGHDDYPWLTQVTQNELISQHIDTRKEVERSVNIGWLHSEASCLEYIGEAVKKGSCIAWIRNSVDDAIRIYRQLLLSKTIAAENLLLFHSRFAFHDRQRIEMQTLDLFGKQSGAQRAGKVIIATQVIEQSLDIDCDEMISDLAPVDLLIQRAGRLQRHLRDRSGLVKTNGLDEREVPVLRILAPEWDDAPRENWLSSAMRNSAYVYPDHGRMWLTQRILREQGAIRMPQSARLLIESVYGDDVDMPAGFAKTEQLQEGKFYCDRAFAGQMLLNFAPGYCAEISDFLPEKMSTRLAEESITLWLAKVVDDVLIPYAPGEHPWEMSALRVRKSWWEKHNGEFERLEGESFHRWCVEQHQNKDFAIVIVVSDSAACGYSATEGLTGKMEA
>NZ_CP045766.1|WP_000834842.1|1934895_1936452_+|type-I-E-CRISPR-associated-protein-Cse1/CasA
MKSFSLLTSCWLPVRFKDGSMGKMAPVDLADENVVDIAATRADLQGAAWQFLLGVLQCSIAPKNSARWEDIWEDGLTEPMLREALAPLEHAFQFGAETPSFMQDFEPLTGEKVSIASLLPETPGAQTTKFNKDHFVKRGVTERFCPHCAALALFSLQLNAPSGGKGYRTGLRGGGPMTTLIELQMYQGERQTPLWRKLWLNVMPQDAADLPLPAACDASVFPWLAATRTSEQASAITTPEHVNKLQAYWGMPRRIRLDFTTTQSGACDICGTNSDDLLSVMTVKNYGVNYDGWRHPLTPYRLPVKEGSGFFSVKPQPGGLIWRDWLGLSQENQTEANKEYPAQVVKVFNARRLKGVKAGLWGFGADFDNMKIRCWYEHHFPLLMTEGLMPDLRKATQTAARLLSLLRSALKEAWFANAKDARGDFSFIDIDFWNLTQGDFLNLIRDLENGGEPDELLTKWRRELWLFTRRYFDDRVFTNPYESNDLKRIMTARKKYFTTSAEKQSAKAARAKKQEAAE
>NZ_CP045766.1|WP_001028359.1|1936448_1937003_+|type-I-E-CRISPR-associated-protein-Cse2/CasB
MNIVKDDHKATLRQWHEELQEKRGARASLRRSVTVNDVCLSEGFRSLLMQTHTLWKIEGQEWRFTALALTAAVAANVKTIDERQTFAAQLGQMTGNNPVMSERRFTRLSTVKTSDELLRQLRRAVKLLNGAVNLISLAEDIFRWCQEHDDLLNHHRRQQRPTEFIRIRWALEYYQAGDADNEKV
>NZ_CP045766.1|WP_000206422.1|1937016_1938072_+|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC
MTTFIQLHLLTAYPAANLNRDDTGAPKTVVLGGATRLRISSQSLKRAWRTSELFEQALAGNIGIRSGRIAREAAQILMESGIDAKKAVEYVEKIASCFGKVKADKKAKDPLTNAETEQLVHISPAEFEAVKALAHRLAEEKRAPKEEELALLRHDRMAVDIAMFGRMLANKPDFNVEAACQVAHAFGVSETIVEDDFFTAVDDLRAASEDAGAGHLGETGFGSALFYTYICIDKDLLVKNLNGNEELANKTLRAFTEAALKVSPTGKQNSFASRAYASWALAEKGTEQPRSLAAAFYEPINGTDQLNVAVQRITSLHKNMNQVYDQQTDIASFDVMNQQGSMKDVLDFICA
>NZ_CP045766.1|WP_000085113.1|1938082_1938829_+|type-I-E-CRISPR-associated-protein-Cas5/CasD
MSQYLVFQLHGPMASWGVDAPGEVRHSHELPSRSALLGLLAAALGIRRDEEERLNAFNRHYQFLLCASGNPRWARDYHTVQMPKEVRKARYFSRREELQDPELLSALISRRDYYTDAWWMIAVSATPDAPYTLAQLQTSLQHPVFPLYLGRKSHPLALPLAPQLLEGRAADVLREAYRRYQDQFNALKLTLPRLQNECWWEGEHDGLTANKILRRRDMPLSRQQWLFGERSVNQGPWLRKEDACISQE

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Crispr_ID: NZ_CP045766_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP045766_2

1940768-1942016

TypeI-E

I-E

Consensus_repeat	Method
GTGTTCCCCGCGCCAGCGGGGATAAACCG	PILER-CR
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CRISPRCasFinder
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CRT

20 spacers

cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3

The CRISPR arrays of NZ_CP045766_2

>merge|NZ_CP045766|2|1940768-1942016|PILER-CR,CRISPRCasFinder,CRT
GTGTTCCCCGCGCCAGCGGGGATAAACCGAGACATCAGACCACCGCGAGCCAGGAACACGGGTGTTCCCCGCGCCAGCGGGGATAAACCCGGGTATACGTTACACCGGGCAAATGTGGTACAGTGTTCCCCGCGCCAGCGGGGATAAACCGGGGGGATGGAGGTGCTAGACCCACAGTTTTAGGTGTTCCCCGCGCCAGCGGGGATAAACCGTTGGGCGACTCCAACGTTATAAAAATCAAAAAGTGTTCCCCGCGCCAGCGGGGATAAACCGAATAATAGATTTATTAAGTGCGGGAGAAATTAGTGTTCCCCGCGCCAGCGGGGATAAACCGTAATTCCTGTTTCCGTCATTAGCTGGCATAGAGTGTTCCCCGCGCCAGCGGGGATAAACCGCATATAGTCATCTTACGCTAACAACTTGTTAAGTGTTCCCCGCGCCAGCGGGGATAAACCGGATATATTCAGCGATATACTAACGGAATTAATGTGTTCCCCGCGCCAGCGGGGATAAACCGCGTTTCTCAATGGTGGGATGGCGCAAATGAACGTGTTCCCCGCGCCAGCGGGGATAAACCGCGGCAAACAAAATAGCGATTCACGGTAATACGGTGTTCCCCGCGCCAGCGGGGATAAACCGGGAGTTGCAGCTACAATTGTTGGTAGCAAGGAGTGTTCCCCGCGCCAGCGGGGATAAACCGGACATAACCGGGTTTTGCCGACACAAGGGGTTGTGTTCCCCGCGCCAGCGGGGATAAACCGTTACGCTGTGTAAAATACGGGGTGCATTCTAGGTGTTCCCCGCGGCAGCGGGGATAAACCGTACAGGTTGCCATCGGCCCCCATTCCAGCCAAGTGTTCCCCGCGCCAGCGGGGATAAACCGGAATCCAGTTGCCGTTTAAATCAATTCGCGCCGTGTTCCCCGCGCCAGCGGGGATAAACCGCACTACCCGTCTGAGGCCTGGACGATTATCCAGTGTTCCCCGCGCCAGCGGGGATAAACCGAATTCAATACGGAGGGGTGTCAATGGATATCAGTGTTCCCCGCGCCAGCGGGGATAAACCGCGTATGGAGAGATTGGCAAAGATTTAGGGTAGGTGTTCCCCGCGCCAGAGGGGATAAACCGGTCAGAATGACGAATTTCCCTGAATTATCAGAGTGTTCCCCGCGCCAGCGGGGATAAACCGCAATGACCTCCCACCATAGTACCAATACCAGCGTGTTCCCCGCGCCAGCGGGGCTTTTACT

>NZ_CP045766|2|2|1940768-1941955|PILER-CR
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AGACATCAGACCACCGCGAGCCAGGAACACGG
GTGTTCCCCGCGCCAGCGGGGATAAACCC	GGGTATACGTTACACCGGGCAAATGTGGTACA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GGGGGATGGAGGTGCTAGACCCACAGTTTTAG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TTGGGCGACTCCAACGTTATAAAAATCAAAAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AATAATAGATTTATTAAGTGCGGGAGAAATTA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TAATTCCTGTTTCCGTCATTAGCTGGCATAGA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CATATAGTCATCTTACGCTAACAACTTGTTAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GATATATTCAGCGATATACTAACGGAATTAAT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGTTTCTCAATGGTGGGATGGCGCAAATGAAC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGGCAAACAAAATAGCGATTCACGGTAATACG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GGAGTTGCAGCTACAATTGTTGGTAGCAAGGA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GACATAACCGGGTTTTGCCGACACAAGGGGTT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TTACGCTGTGTAAAATACGGGGTGCATTCTAG
GTGTTCCCCGCGGCAGCGGGGATAAACCG	TACAGGTTGCCATCGGCCCCCATTCCAGCCAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GAATCCAGTTGCCGTTTAAATCAATTCGCGCC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CACTACCCGTCTGAGGCCTGGACGATTATCCA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AATTCAATACGGAGGGGTGTCAATGGATATCA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGTATGGAGAGATTGGCAAAGATTTAGGGTAG
GTGTTCCCCGCGCCAGAGGGGATAAACCG	GTCAGAATGACGAATTTCCCTGAATTATCAGA
GTGTTCCCCGCGCCAGCGGGGATAAACCG

>NZ_CP045766|2|2|1940768-1942016|CRISPRCasFinder
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AGACATCAGACCACCGCGAGCCAGGAACACGG
GTGTTCCCCGCGCCAGCGGGGATAAACCC	GGGTATACGTTACACCGGGCAAATGTGGTACA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GGGGGATGGAGGTGCTAGACCCACAGTTTTAG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TTGGGCGACTCCAACGTTATAAAAATCAAAAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AATAATAGATTTATTAAGTGCGGGAGAAATTA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TAATTCCTGTTTCCGTCATTAGCTGGCATAGA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CATATAGTCATCTTACGCTAACAACTTGTTAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GATATATTCAGCGATATACTAACGGAATTAAT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGTTTCTCAATGGTGGGATGGCGCAAATGAAC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGGCAAACAAAATAGCGATTCACGGTAATACG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GGAGTTGCAGCTACAATTGTTGGTAGCAAGGA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GACATAACCGGGTTTTGCCGACACAAGGGGTT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TTACGCTGTGTAAAATACGGGGTGCATTCTAG
GTGTTCCCCGCGGCAGCGGGGATAAACCG	TACAGGTTGCCATCGGCCCCCATTCCAGCCAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GAATCCAGTTGCCGTTTAAATCAATTCGCGCC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CACTACCCGTCTGAGGCCTGGACGATTATCCA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AATTCAATACGGAGGGGTGTCAATGGATATCA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGTATGGAGAGATTGGCAAAGATTTAGGGTAG
GTGTTCCCCGCGCCAGAGGGGATAAACCG	GTCAGAATGACGAATTTCCCTGAATTATCAGA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CAATGACCTCCCACCATAGTACCAATACCAGC
GTGTTCCCCGCGCCAGCGGGGCTTTTACT

>NZ_CP045766|2|2|1940768-1942016|CRT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AGACATCAGACCACCGCGAGCCAGGAACACGG
GTGTTCCCCGCGCCAGCGGGGATAAACCC	GGGTATACGTTACACCGGGCAAATGTGGTACA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GGGGGATGGAGGTGCTAGACCCACAGTTTTAG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TTGGGCGACTCCAACGTTATAAAAATCAAAAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AATAATAGATTTATTAAGTGCGGGAGAAATTA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TAATTCCTGTTTCCGTCATTAGCTGGCATAGA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CATATAGTCATCTTACGCTAACAACTTGTTAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GATATATTCAGCGATATACTAACGGAATTAAT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGTTTCTCAATGGTGGGATGGCGCAAATGAAC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGGCAAACAAAATAGCGATTCACGGTAATACG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GGAGTTGCAGCTACAATTGTTGGTAGCAAGGA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GACATAACCGGGTTTTGCCGACACAAGGGGTT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TTACGCTGTGTAAAATACGGGGTGCATTCTAG
GTGTTCCCCGCGGCAGCGGGGATAAACCG	TACAGGTTGCCATCGGCCCCCATTCCAGCCAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GAATCCAGTTGCCGTTTAAATCAATTCGCGCC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CACTACCCGTCTGAGGCCTGGACGATTATCCA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AATTCAATACGGAGGGGTGTCAATGGATATCA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGTATGGAGAGATTGGCAAAGATTTAGGGTAG
GTGTTCCCCGCGCCAGAGGGGATAAACCG	GTCAGAATGACGAATTTCCCTGAATTATCAGA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CAATGACCTCCCACCATAGTACCAATACCAGC
GTGTTCCCCGCGCCAGCGGGGCTTTTACT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP045766.1\|WP_000517485.1\|1946976_1947288_+\|cell-division-protein-FtsB	unknown	unknown	gnl\|CDD\|179156
NZ_CP045766.1\|WP_000372380.1\|1943462_1944371_+\|sulfate-adenylyltransferase-subunit-CysD	unknown	unknown	gnl\|CDD\|235375
NZ_CP045766.1\|WP_000490491.1\|1942157_1943210_-\|aminopeptidase	unknown	unknown	gnl\|CDD\|182299
NZ_CP045766.1\|WP_000085113.1\|1938082_1938829_+\|type-I-E-CRISPR-associated-protein-Cas5/CasD	cas5	cd09645_cas5_CAS-I-E	gnl\|CDD\|187776
NZ_CP045766.1\|WP_000144829.1\|1939457_1940378_+\|type-I-E-CRISPR-associated-endonuclease-Cas1	cas1	cd09719_cas1_CAS-I-E	gnl\|CDD\|274693
NZ_CP045766.1\|WP_024135102.1\|1932220_1934884_+\|CRISPR-associated-helicase/endonuclease-Cas3	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|224124
NZ_CP045766.1\|WP_001145525.1\|1930830_1931784_-\|SPI-1-type-III-secretion-system-effector-SopD	unknown	unknown	gnl\|CDD\|185277
NZ_CP045766.1\|WP_000046974.1\|1945806_1946412_+\|adenylyl-sulfate-kinase	unknown	unknown	gnl\|CDD\|179661
NZ_CP045766.1\|WP_000134254.1\|1948492_1949542_+\|tRNA-pseudouridine(13)-synthase-TruD	unknown	unknown	gnl\|CDD\|234884
NZ_CP045766.1\|WP_000062296.1\|1940377_1940671_+\|type-I-E-CRISPR-associated-endoribonuclease-Cas2	cas2	cd09648_cas2_CAS-I-E	gnl\|CDD\|236930
NZ_CP045766.1\|WP_001219254.1\|1948016_1948496_+\|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase	unknown	unknown	gnl\|CDD\|178851
NZ_CP045766.1\|WP_001096609.1\|1930005_1930740_+\|phosphoadenosine-phosphosulfate-reductase	unknown	unknown	gnl\|CDD\|234997
NZ_CP045766.1\|WP_001098366.1\|1944380_1945820_+\|sulfate-adenylyltransferase-subunit-CysN	unknown	unknown	gnl\|CDD\|235349
NZ_CP045766.1\|WP_000834842.1\|1934895_1936452_+\|type-I-E-CRISPR-associated-protein-Cse1/CasA	cas8e	cd09669_cas8e_CAS-I-E	gnl\|CDD\|274192
NZ_CP045766.1\|WP_020845101.1\|1946462_1946786_+\|DUF3561-family-protein	unknown	unknown	gnl\|CDD\|371891
NZ_CP045766.1\|WP_000741654.1\|1947306_1948017_+\|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	unknown	unknown	gnl\|CDD\|234670
NZ_CP045766.1\|WP_000281488.1\|1938810_1939461_+\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	cas6e	cd09664_cas6e_CAS-I-E	gnl\|CDD\|215025
NZ_CP045766.1\|WP_001028359.1\|1936448_1937003_+\|type-I-E-CRISPR-associated-protein-Cse2/CasB	cse2gr11	cd09731_cse2gr11_CAS-I-E	gnl\|CDD\|187862
NZ_CP045766.1\|WP_001221542.1\|1949522_1950284_+\|5'/3'-nucleotidase-SurE	unknown	unknown	gnl\|CDD\|234732
NZ_CP045766.1\|WP_000206422.1\|1937016_1938072_+\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	cas7	pfam09344_cas7_CAS-I-E	gnl\|CDD\|273843

Protein	Function_ID	Function_description	E-value
NZ_CP045766.1\|WP_000517485.1\|1946976_1947288_+\|cell-division-protein-FtsB	gnl\|CDD\|179156	PRK00888, ftsB, cell division protein FtsB; Reviewed.	2.96707e-63
NZ_CP045766.1\|WP_000372380.1\|1943462_1944371_+\|sulfate-adenylyltransferase-subunit-CysD	gnl\|CDD\|235375	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD.	0
NZ_CP045766.1\|WP_000490491.1\|1942157_1943210_-\|aminopeptidase	gnl\|CDD\|182299	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional.	0
NZ_CP045766.1\|WP_000085113.1\|1938082_1938829_+\|type-I-E-CRISPR-associated-protein-Cas5/CasD	gnl\|CDD\|187776	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas5 is a RAMP superfamily protein; Subunit of the Cascade complex.	7.02999e-47
NZ_CP045766.1\|WP_000144829.1\|1939457_1940378_+\|type-I-E-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|274693	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the ECOLI subtype of CRISPR/Cas system.	1.20581e-158
NZ_CP045766.1\|WP_024135102.1\|1932220_1934884_+\|CRISPR-associated-helicase/endonuclease-Cas3	gnl\|CDD\|224124	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms].	6.5508e-171
NZ_CP045766.1\|WP_001145525.1\|1930830_1931784_-\|SPI-1-type-III-secretion-system-effector-SopD	gnl\|CDD\|185277	PRK15379, PRK15379, type III secretion system effector SopD.	0
NZ_CP045766.1\|WP_000046974.1\|1945806_1946412_+\|adenylyl-sulfate-kinase	gnl\|CDD\|179661	PRK03846, PRK03846, adenylylsulfate kinase; Provisional.	8.61836e-146
NZ_CP045766.1\|WP_000134254.1\|1948492_1949542_+\|tRNA-pseudouridine(13)-synthase-TruD	gnl\|CDD\|234884	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed.	0
NZ_CP045766.1\|WP_000062296.1\|1940377_1940671_+\|type-I-E-CRISPR-associated-endoribonuclease-Cas2	gnl\|CDD\|236930	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional.	1.41158e-63
NZ_CP045766.1\|WP_001219254.1\|1948016_1948496_+\|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase	gnl\|CDD\|178851	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed.	6.44996e-105
NZ_CP045766.1\|WP_001096609.1\|1930005_1930740_+\|phosphoadenosine-phosphosulfate-reductase	gnl\|CDD\|234997	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase.	1.96458e-136
NZ_CP045766.1\|WP_001098366.1\|1944380_1945820_+\|sulfate-adenylyltransferase-subunit-CysN	gnl\|CDD\|235349	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional.	0
NZ_CP045766.1\|WP_000834842.1\|1934895_1936452_+\|type-I-E-CRISPR-associated-protein-Cse1/CasA	gnl\|CDD\|274192	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model family, represented by CT1972 from Chlorobium tepidum, is found in Ecoli subtype CRISPR/Cas regions of many bacteria, most of which are mesophiles, and not in Archaea. It is designated Cse1.	2.83189e-175
NZ_CP045766.1\|WP_020845101.1\|1946462_1946786_+\|DUF3561-family-protein	gnl\|CDD\|371891	pfam12084, DUF3561, Protein of unknown function (DUF3561). This family of proteins is functionally uncharacterized. This protein is found in bacteria. Proteins in this family are about 110 amino acids in length.	2.27176e-47
NZ_CP045766.1\|WP_000741654.1\|1947306_1948017_+\|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	gnl\|CDD\|234670	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase.	1.35818e-118
NZ_CP045766.1\|WP_000281488.1\|1938810_1939461_+\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	gnl\|CDD\|215025	smart01101, CRISPR_assoc, This domain forms an anti-parallel beta strand structure with flanking alpha helical regions.	1.96993e-74
NZ_CP045766.1\|WP_001028359.1\|1936448_1937003_+\|type-I-E-CRISPR-associated-protein-Cse2/CasB	gnl\|CDD\|187862	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Small alpha-helical protein; also known as Cse2/CasB/YgcK family; specific gene for I-E subtype;.	1.76417e-31
NZ_CP045766.1\|WP_001221542.1\|1949522_1950284_+\|5'/3'-nucleotidase-SurE	gnl\|CDD\|234732	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional.	5.43378e-146
NZ_CP045766.1\|WP_000206422.1\|1937016_1938072_+\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	gnl\|CDD\|273843	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family is represented by CT1975 of Chlorobium tepidum and is part of the Ecoli subtype of CRISPR/Cas locis. It is designated Cse4, for CRISPR/Cas Subtype Ecoli protein 4.	3.56056e-138

>NZ_CP045766.1|WP_000062296.1|1940377_1940671_+|type-I-E-CRISPR-associated-endoribonuclease-Cas2
MSMMVVATENVPPRLRGRLAIWLLEIRAGVYVGDTSKRIREMIWQQITQLGGEGNVVMAWATNTESGFEFQTWGENRRIPVDVDGLRLVSFLPIQNQ
>NZ_CP045766.1|WP_000144829.1|1939457_1940378_+|type-I-E-CRISPR-associated-endonuclease-Cas1
MTFVPLNPIPLKDRTSMIFLQYGQIDVLDGAFVLIDKTGIRTHIPVGSVACIMLEPGTRVSHAAVHLASTVGTLLVWVGEAGVRVYSSGQPGGARADKLLYQAKLALDDDLRLKVVRKMYELRFREPPPARRSIEQLRGIEGSRVRATYALLAKQYGVKWNGRNYDPKDWEKGDVVNRCISAATSCLYGISEAAVLAAGYAPAIGFIHSGKPLSFVYDIADIIKFESVVPKAFEIAARHPAEPDKEVRLACRDIFRSTKLTGRLIPLIENVLAAGEIEPPQPAPDMLPPAIPEPESLGDSGHRGHS
>NZ_CP045766.1|WP_000281488.1|1938810_1939461_+|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE
MYLSRITLHTSELSPAQLLHLVERGEYVMHQWLWELFPGGKERQFLYRREELQGAFRFFVLSQEQPAASAIFDVQTRPFVPTLSAGQTLRFNLRANPTVCKNGKRHDLLMEAKRQRKMQGDSQDIWPYQQQAALAWLARQGEQNGFSLRQASVEAYRQQQLRREKSRQMIQFSSVDYTGVLVITDPVLFLQRLAQGYGKSRAFGCGMMMIKPGDDA
>NZ_CP045766.1|WP_000085113.1|1938082_1938829_+|type-I-E-CRISPR-associated-protein-Cas5/CasD
MSQYLVFQLHGPMASWGVDAPGEVRHSHELPSRSALLGLLAAALGIRRDEEERLNAFNRHYQFLLCASGNPRWARDYHTVQMPKEVRKARYFSRREELQDPELLSALISRRDYYTDAWWMIAVSATPDAPYTLAQLQTSLQHPVFPLYLGRKSHPLALPLAPQLLEGRAADVLREAYRRYQDQFNALKLTLPRLQNECWWEGEHDGLTANKILRRRDMPLSRQQWLFGERSVNQGPWLRKEDACISQE
>NZ_CP045766.1|WP_000206422.1|1937016_1938072_+|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC
MTTFIQLHLLTAYPAANLNRDDTGAPKTVVLGGATRLRISSQSLKRAWRTSELFEQALAGNIGIRSGRIAREAAQILMESGIDAKKAVEYVEKIASCFGKVKADKKAKDPLTNAETEQLVHISPAEFEAVKALAHRLAEEKRAPKEEELALLRHDRMAVDIAMFGRMLANKPDFNVEAACQVAHAFGVSETIVEDDFFTAVDDLRAASEDAGAGHLGETGFGSALFYTYICIDKDLLVKNLNGNEELANKTLRAFTEAALKVSPTGKQNSFASRAYASWALAEKGTEQPRSLAAAFYEPINGTDQLNVAVQRITSLHKNMNQVYDQQTDIASFDVMNQQGSMKDVLDFICA
>NZ_CP045766.1|WP_001028359.1|1936448_1937003_+|type-I-E-CRISPR-associated-protein-Cse2/CasB
MNIVKDDHKATLRQWHEELQEKRGARASLRRSVTVNDVCLSEGFRSLLMQTHTLWKIEGQEWRFTALALTAAVAANVKTIDERQTFAAQLGQMTGNNPVMSERRFTRLSTVKTSDELLRQLRRAVKLLNGAVNLISLAEDIFRWCQEHDDLLNHHRRQQRPTEFIRIRWALEYYQAGDADNEKV
>NZ_CP045766.1|WP_000834842.1|1934895_1936452_+|type-I-E-CRISPR-associated-protein-Cse1/CasA
MKSFSLLTSCWLPVRFKDGSMGKMAPVDLADENVVDIAATRADLQGAAWQFLLGVLQCSIAPKNSARWEDIWEDGLTEPMLREALAPLEHAFQFGAETPSFMQDFEPLTGEKVSIASLLPETPGAQTTKFNKDHFVKRGVTERFCPHCAALALFSLQLNAPSGGKGYRTGLRGGGPMTTLIELQMYQGERQTPLWRKLWLNVMPQDAADLPLPAACDASVFPWLAATRTSEQASAITTPEHVNKLQAYWGMPRRIRLDFTTTQSGACDICGTNSDDLLSVMTVKNYGVNYDGWRHPLTPYRLPVKEGSGFFSVKPQPGGLIWRDWLGLSQENQTEANKEYPAQVVKVFNARRLKGVKAGLWGFGADFDNMKIRCWYEHHFPLLMTEGLMPDLRKATQTAARLLSLLRSALKEAWFANAKDARGDFSFIDIDFWNLTQGDFLNLIRDLENGGEPDELLTKWRRELWLFTRRYFDDRVFTNPYESNDLKRIMTARKKYFTTSAEKQSAKAARAKKQEAAE
>NZ_CP045766.1|WP_024135102.1|1932220_1934884_+|CRISPR-associated-helicase/endonuclease-Cas3
MLIYHYWGKSRQGEASGGDDYHLLCWHSLDVAAVGYWMVKNNIYFIDHYLKKLGLQDNEQAAQFFAWILCWHDIGKFAHSFQQLYRHEDLNIFNEPPGHYEKIPHTTLGYWLWNTWLSECPELFPPSSLSVRKSKRVMTLWMPVTTGHHGRPPDAIPEVDHFRQQDKDAAREFLLKIKALFPLITLPEAWDEDEGIAQFQQLSWFISATVVLADWTGSASHYFPRMAEKMPVEMYWQQALIKARKAITLFPTAANVSAFTGIETLFPFIQHPTPLQQKALTLDIHVDGAQLFILEDVTGAGKTEAALILAHRLMAAGKAQGLYFGLPTMATANAMFERMANSWLALYQPDSRPSLVLAHSARHLMDRFNQSIWSASLSGTEEPDDASPYSQGCAAWFTDSNKKALLAEVGVGTLDQAMMAVMPFKHNNLRLLGLSNKILLADEIHACDAWMSRILEGLIECQASNGNATILLSATLSQQQRDKLVAAFSRGVKRSVQAPLLGHDDYPWLTQVTQNELISQHIDTRKEVERSVNIGWLHSEASCLEYIGEAVKKGSCIAWIRNSVDDAIRIYRQLLLSKTIAAENLLLFHSRFAFHDRQRIEMQTLDLFGKQSGAQRAGKVIIATQVIEQSLDIDCDEMISDLAPVDLLIQRAGRLQRHLRDRSGLVKTNGLDEREVPVLRILAPEWDDAPRENWLSSAMRNSAYVYPDHGRMWLTQRILREQGAIRMPQSARLLIESVYGDDVDMPAGFAKTEQLQEGKFYCDRAFAGQMLLNFAPGYCAEISDFLPEKMSTRLAEESITLWLAKVVDDVLIPYAPGEHPWEMSALRVRKSWWEKHNGEFERLEGESFHRWCVEQHQNKDFAIVIVVSDSAACGYSATEGLTGKMEA
>NZ_CP045766.1|WP_001145525.1|1930830_1931784_-|SPI-1-type-III-secretion-system-effector-SopD
MPVTLHFGNQQNYMLNETRLAQLLSADKEKATHRGYWNKLQDHFTSEKQDHALEVLHGMLYGHARNEPGEMEINVEGMSKIYAFKHLQRLACPADQDLFRIQMDASQTQLLFMIGDTVISQSSIQDTLNLSENAVVKSMDRAERELFLKICEMIGSTITWHADLLQGSASTLRKEVAGNAQIKEAVYKMMRPDEAPDHRLVEWRGSLTEKEESILACINADSFDIITQFCKLGYREVQSEVSFFMIHPCITYLLHSYSPITEFKETNTAFLNNFNQDYDNYHSNKRDIDPILEEIYLTHEHSLHIGKNNCSRNILML
>NZ_CP045766.1|WP_001096609.1|1930005_1930740_+|phosphoadenosine-phosphosulfate-reductase
MAKLSLSALNERPKVDRVLALAETNAALETLSAEERIVWALENLPGEYVLSSSFGIQAAVSLHLVNQVYPGIPVILTDTGYLFAETYQFIDELTEKLNLNLKVYRAKESAAWQEARYGKLWEQGIEGIEKYNDINKVEPLNRALHELSAQTWFAGLRREQSGSRATLPVLAIQRGVFKVLPIIDWDNRTVFQYLQKHGLKYHPLWDQGYLSVGDTHTTRKWEPGMAEEETRFFGLKRECGLHEG
>NZ_CP045766.1|WP_000490491.1|1942157_1943210_-|aminopeptidase
MFSATRRFTAILALGVSAVLPALAASPKPGEMANIQARHIATFFPGRMTGSPAEMLSADYLRQQFSQMGYQSDIRTFNSRFIYTTKDNRKNWHNVTGSTVIAAHEGNVPQQIIIMAHLDTYAPQSDADVDANLGGLTLQGIDDDAVGLGVMLELAARLKDIPTHYGIRFIATSGEEEGKLGAENVLQRMSATEKKNTLLVINLDNLVVGDKLYFNSGKNTPEAVRTLTRDRALAIARQHGIAASTNPGLNPAYPKGTGCCNDAEVFDDAGISVLSVEATNWSLGKKDGYQQRAKNASFPDGNSWHNVRLDNQQHIDKALPGRIERRSRDVVRIMLPLVKELAKAAPIQPK
>NZ_CP045766.1|WP_000372380.1|1943462_1944371_+|sulfate-adenylyltransferase-subunit-CysD
MDQKRLTHLRQLEAESIHIIREVAAEFANPVMLYSIGKDSSVMLHLARKAFYPGSLPFPLLHVDTGWKFREMYAFRDRTAKAYGCELLVHKNPEGVAMGINPFVHGSAKHTDIMKTEGLKQALNKYGFDAAFGGARRDEEKSRAKERIYSFRDRFHRWDPKNQRPELWRNYNGLINKGESIRVFPLSNWTEQDIWQYIWLENIDIVPLYLAAERPVLERDGMLIMVDDDRIDLQPGEVIQKRMVRFRTLGCWPLTGAVESHAQTLPEIIEEMLVSTTSERQGRVIDRDQAGSMELKKRQGYF
>NZ_CP045766.1|WP_001098366.1|1944380_1945820_+|sulfate-adenylyltransferase-subunit-CysN
MNTTLAQQIADEGGVEAWMIAQQHKSLLRFLTCGSVDDGKSTLIGRLLHDTRQIYEDQLSSLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFSTEKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTRRHSFISTLLGIKHLVVAINKMDLVDYREEAFARIREDYLTFAEQLPGNLDIRFVPLSALEGDNIAVQSAAMRWYSGPTLLEVLETVDIQRVADRQPMRFPVQYVNRPNLDFRGYAGTLASGCVRVGQRIKVLPSGVVSSVARIVTFDGDKDDAYAGEAITLVLNNEIDISRGDLLLAATETLTPVQRAAIDVVWMAEQPLTPGQSYDVKLAGKKTRARIDNIRYQIDINHLTQRDVESLPLNGIGLVEMTFDEPLALDVYQQNPVTGGLIFIDRLSNVTVGAGMVREAVEGNVTPPEKYSAFELELNALVRRYFPHWDARDLSGDKHGAA
>NZ_CP045766.1|WP_000046974.1|1945806_1946412_+|adenylyl-sulfate-kinase
MAQHDENVVWHSHPVTVAAREKLHGHRGVVLWFTGLSGSGKSTVAGALEEALHQRGVSTYLLDGDNVRHGLCRDLGFSDADRKENVRRVGEVASLMADAGLIVLTAFISPHRAERQLVQERVGNDRFIEIYVDTPLAICEQRDPKGLYKKARAGELRHFTGIDAIYEAPESPQIHLNGEQLVTNLVSQLLDLLRQRDIIRS
>NZ_CP045766.1|WP_020845101.1|1946462_1946786_+|DUF3561-family-protein
MRNSHNITFTRSDAFIVDDDATSSLPGAVVGFVSWLLALGIPFLLYGPNTLFFFLYTWPFFLALMPVSVIIGIALHLLVKGKLLFSMMFTLVAVGALFGVLFIWLLG
>NZ_CP045766.1|WP_000517485.1|1946976_1947288_+|cell-division-protein-FtsB
MGKLTLLLLTLLVWLQYSLWFGKNGIHDYSRVNDDVVAQQATNAKLKARNDQLFAEIDDLNGGQEAIEERARNELSMTKPGETFYRLVPDASKRAQTAGQNNR
>NZ_CP045766.1|WP_000741654.1|1947306_1948017_+|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase
MAATLLDVCAVVPAAGFGRRMQTECPKQYLSIGNKTILEHSVHALLAHPRVTRVVIAISPGDTRFAQLPLANHPQITVVDGGNERADSVLAGLQAVAEAQWVLVHDAARPCLHQDDLSRLLAISANNRVGGILASPVRDTMKRGEPGKSVIAHTVERGDLWHALTPQFFPRELLHDCLTRALNEGATITDEASALEYCGFHPALIEGRADNIKVTRPEDLALAEFYLTRTIHQEKA
>NZ_CP045766.1|WP_001219254.1|1948016_1948496_+|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase
MRIGHGFDVHAFGGEGPVIIGGVRIPYEKGLLAHSDGDVALHALTDALLGAAALGDIGKLFPDTDPAFKGADSRELLREAWRRIQAKGYTLGNVDVTIIAQAPKMLPHIPQMRVFIAEDLGCHMDDVNVKATTTEKLGFTGRGEGIACEAVALLMKAAK
>NZ_CP045766.1|WP_000134254.1|1948492_1949542_+|tRNA-pseudouridine(13)-synthase-TruD
MTEFDNLTWLHGKPQGSGLLKANPEDFVVVEDLGFTPDGEGEHILVRILKNGCNTRFVADALAKFLKIHAREISFAGQKDKHAVTEQWLCARVPGKEMPDFSAFQLEGCKVLEYARHKRKLRLGALKGNAFTLVLREISDRRDVETRLQAIRDGGVPNYFGAQRFGIGGNNLQGALRWAQSDAPVRDRNKRSFWLSAARSALFNQIVHQRLTKPDFNQVVDGDALQLAGRGSWFVATSEELPELQRRVDEKALMITASLPGSGEWGTQREALAFEQDAIAQETVLQSLLLREKVEASRRAMLLYPQQLSWNWWDDVTVELRFWLPAGSFATSVVRELINTVGDYAHIAE
>NZ_CP045766.1|WP_001221542.1|1949522_1950284_+|5'/3'-nucleotidase-SurE
MRILLSNDDGVHAPGIQTLAKALREFADVQVVAPDRNRSGASNSLTLESSLRTFTFDNGDIAVQMGTPTDCVYLGVNALMRPRPDIVVSGINAGPNLGDDVIYSGTVAAAMEGRHLGFPALAVSLNGYQHYDTAAVVTCALLRGLSREPLRTGRILNVNVPDLPLAQIKGIRVTRCGSRHPADKVIPQEDPRGNTLYWIGPPGDKYDAGPDTDFAAVDEGYVSVTPLHVDLTAHSAHDVVADWLDSVGVGTQW

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NZ_CP045766_2	2.2\|1940858\|32\|NZ_CP045766\|PILER-CR,CRISPRCasFinder,CRT	1940858-1940889	32	NZ_CP045766.1	1946857-1946888	0	1.0

1. spacer 2.2|1940858|32|NZ_CP045766|PILER-CR,CRISPRCasFinder,CRT matches to position: 1946857-1946888, mismatch: 0, identity: 1.0

gggtatacgttacaccgggcaaatgtggtaca	CRISPR spacer
gggtatacgttacaccgggcaaatgtggtaca	Protospacer
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MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP045766_1	1.11\|1924360\|32\|NZ_CP045766\|PILER-CR,CRISPRCasFinder,CRT	1924360-1924391	32	MT774405	CrAssphage cr115_1, complete genome	41630-41661	6	0.812
NZ_CP045766_1	1.3\|1923872\|32\|NZ_CP045766\|PILER-CR,CRISPRCasFinder,CRT	1923872-1923903	32	MK016501	Mycobacterium phage Nebkiss, complete genome	32718-32749	7	0.781
NZ_CP045766_1	1.3\|1923872\|32\|NZ_CP045766\|PILER-CR,CRISPRCasFinder,CRT	1923872-1923903	32	NC_026590	Mycobacterium phage Gaia, complete genome	33017-33048	7	0.781
NZ_CP045766_1	1.6\|1924055\|32\|NZ_CP045766\|PILER-CR,CRISPRCasFinder,CRT	1924055-1924086	32	NZ_CP016541	Planococcus versutus strain L10.15 plasmid pPS15-1, complete sequence	46502-46533	7	0.781
NZ_CP045766_2	2.8\|1941224\|32\|NZ_CP045766\|PILER-CR,CRISPRCasFinder,CRT	1941224-1941255	32	NZ_CP053574	Citrobacter sp. TSA-1 plasmid unnamed1, complete sequence	129365-129396	7	0.781
NZ_CP045766_2	2.8\|1941224\|32\|NZ_CP045766\|PILER-CR,CRISPRCasFinder,CRT	1941224-1941255	32	HE858210	Enterobacteria phage RB43, isolate RB43-GVA complete genome	77913-77944	7	0.781
NZ_CP045766_2	2.8\|1941224\|32\|NZ_CP045766\|PILER-CR,CRISPRCasFinder,CRT	1941224-1941255	32	MT334653	Buttiauxella phage vB_ButM_GuL6, complete genome	76994-77025	7	0.781
NZ_CP045766_2	2.8\|1941224\|32\|NZ_CP045766\|PILER-CR,CRISPRCasFinder,CRT	1941224-1941255	32	HE981739	Enterobacteria phage RB43, isolate RB43-GVA orf057::gfp complete genome	77916-77947	7	0.781
NZ_CP045766_2	2.8\|1941224\|32\|NZ_CP045766\|PILER-CR,CRISPRCasFinder,CRT	1941224-1941255	32	NC_007023	Enterobacteria phage RB43, complete genome	78311-78342	7	0.781
NZ_CP045766_1	1.4\|1923933\|32\|NZ_CP045766\|PILER-CR,CRISPRCasFinder,CRT	1923933-1923964	32	MT682714	Escherichia phage vB_EcoM_Lutter, complete genome	160232-160263	8	0.75
NZ_CP045766_1	1.4\|1923933\|32\|NZ_CP045766\|PILER-CR,CRISPRCasFinder,CRT	1923933-1923964	32	MK373787	Escherichia phage vB_EcoM_G8, complete genome	159821-159852	8	0.75
NZ_CP045766_1	1.5\|1923994\|32\|NZ_CP045766\|PILER-CR,CRISPRCasFinder,CRT	1923994-1924025	32	NC_009507	Sphingomonas wittichii RW1 plasmid pSWIT01, complete sequence	13417-13448	8	0.75
NZ_CP045766_1	1.6\|1924055\|32\|NZ_CP045766\|PILER-CR,CRISPRCasFinder,CRT	1924055-1924086	32	AP014314	Uncultured Mediterranean phage uvMED isolate uvMED-GF-U-MedDCM-OCT-S31-C24, * SEQUENCING IN PROGRESS *	17995-18026	8	0.75
NZ_CP045766_1	1.10\|1924299\|32\|NZ_CP045766\|PILER-CR,CRISPRCasFinder,CRT	1924299-1924330	32	NZ_CP006589	Hymenobacter sp. APR13 plasmid pHB, complete sequence	5993-6024	8	0.75
NZ_CP045766_2	2.2\|1940858\|32\|NZ_CP045766\|PILER-CR,CRISPRCasFinder,CRT	1940858-1940889	32	MN694010	Marine virus AFVG_250M212, complete genome	46118-46149	8	0.75
NZ_CP045766_2	2.14\|1941590\|32\|NZ_CP045766\|PILER-CR,CRISPRCasFinder,CRT	1941590-1941621	32	NZ_CP018229	Rhizobium leguminosarum strain Vaf-108 plasmid unnamed1, complete sequence	1215570-1215601	8	0.75
NZ_CP045766_2	2.14\|1941590\|32\|NZ_CP045766\|PILER-CR,CRISPRCasFinder,CRT	1941590-1941621	32	NC_012848	Rhizobium leguminosarum bv. trifolii WSM1325 plasmid pR132501, complete sequence	576811-576842	8	0.75
NZ_CP045766_1	1.3\|1923872\|32\|NZ_CP045766\|PILER-CR,CRISPRCasFinder,CRT	1923872-1923903	32	MF150911	Ralstonia phage DU_RP_II, complete genome	18149-18180	9	0.719
NZ_CP045766_1	1.3\|1923872\|32\|NZ_CP045766\|PILER-CR,CRISPRCasFinder,CRT	1923872-1923903	32	MN996301	Ralstonia phage RpY1, complete genome	34618-34649	9	0.719
NZ_CP045766_1	1.10\|1924299\|32\|NZ_CP045766\|PILER-CR,CRISPRCasFinder,CRT	1924299-1924330	32	NZ_CP045074	Paracoccus kondratievae strain BJQ0001 plasmid unnamed1, complete sequence	444689-444720	9	0.719
NZ_CP045766_1	1.11\|1924360\|32\|NZ_CP045766\|PILER-CR,CRISPRCasFinder,CRT	1924360-1924391	32	NZ_CP019362	Borrelia turicatae 91E135 isolate Oz1 plasmid cp31, complete sequence	13413-13444	9	0.719
NZ_CP045766_2	2.9\|1941285\|32\|NZ_CP045766\|PILER-CR,CRISPRCasFinder,CRT	1941285-1941316	32	AP013405	Uncultured Mediterranean phage uvMED DNA, complete genome, group G15, isolate: uvMED-CGR-U-MedDCM-OCT-S42-C63	20976-21007	9	0.719
NZ_CP045766_2	2.14\|1941590\|32\|NZ_CP045766\|PILER-CR,CRISPRCasFinder,CRT	1941590-1941621	32	NC_013930	Thioalkalivibrio sp. K90mix plasmid pTK9001, complete sequence	35566-35597	9	0.719
NZ_CP045766_2	2.15\|1941651\|32\|NZ_CP045766\|PILER-CR,CRISPRCasFinder,CRT	1941651-1941682	32	NZ_CP035192	Bacillus subtilis strain SRCM104011 plasmid unnamed1	27185-27216	9	0.719
NZ_CP045766_1	1.16\|1924665\|32\|NZ_CP045766\|PILER-CR,CRISPRCasFinder,CRT	1924665-1924696	32	NZ_CP014942	Rhodococcus sp. BH4 plasmid, complete sequence	242035-242066	10	0.688
NZ_CP045766_1	1.17\|1924726\|32\|NZ_CP045766\|CRISPRCasFinder,CRT	1924726-1924757	32	MT884010	Escherichia phage vb_EcoM_bov22_2, complete genome	122010-122041	10	0.688
NZ_CP045766_1	1.17\|1924726\|32\|NZ_CP045766\|CRISPRCasFinder,CRT	1924726-1924757	32	MT884008	Escherichia phage vb_EcoM_bov10K2, complete genome	122009-122040	10	0.688
NZ_CP045766_1	1.17\|1924726\|32\|NZ_CP045766\|CRISPRCasFinder,CRT	1924726-1924757	32	MT884009	Escherichia phage vb_EcoM_bov11CS3, complete genome	122009-122040	10	0.688
NZ_CP045766_1	1.17\|1924726\|32\|NZ_CP045766\|CRISPRCasFinder,CRT	1924726-1924757	32	MT884011	Escherichia phage vb_EcoM_bov25_3, complete genome	122009-122040	10	0.688
NZ_CP045766_1	1.17\|1924726\|32\|NZ_CP045766\|CRISPRCasFinder,CRT	1924726-1924757	32	KT001917	Escherichia phage Murica, complete genome	89483-89514	10	0.688
NZ_CP045766_2	2.4\|1940980\|32\|NZ_CP045766\|PILER-CR,CRISPRCasFinder,CRT	1940980-1941011	32	KT962247	Cellulophaga phage phi17:2_18, complete genome	61795-61826	10	0.688
NZ_CP045766_2	2.4\|1940980\|32\|NZ_CP045766\|PILER-CR,CRISPRCasFinder,CRT	1940980-1941011	32	NC_021798	Cellulophaga phage phi17:2, complete genome	61795-61826	10	0.688
NZ_CP045766_2	2.14\|1941590\|32\|NZ_CP045766\|PILER-CR,CRISPRCasFinder,CRT	1941590-1941621	32	NC_007762	Rhizobium etli CFN 42 plasmid p42a, complete sequence	53241-53272	10	0.688
NZ_CP045766_2	2.17\|1941773\|32\|NZ_CP045766\|PILER-CR,CRISPRCasFinder,CRT	1941773-1941804	32	NZ_CP032686	Rhizobium sp. CCGE531 plasmid pRCCGE531c, complete sequence	622719-622750	10	0.688
NZ_CP045766_2	2.17\|1941773\|32\|NZ_CP045766\|PILER-CR,CRISPRCasFinder,CRT	1941773-1941804	32	NZ_CP032691	Rhizobium sp. CCGE532 plasmid pRCCGE532c, complete sequence	614035-614066	10	0.688

1. spacer 1.11|1924360|32|NZ_CP045766|PILER-CR,CRISPRCasFinder,CRT matches to MT774405 (CrAssphage cr115_1, complete genome) position: , mismatch: 6, identity: 0.812

ccaataattaaacgttgcatttgtt---gcttcgg	CRISPR spacer
ccaataattaaaagtttcatttgtttaagttt---	Protospacer
************ *** ********   *.**

2. spacer 1.3|1923872|32|NZ_CP045766|PILER-CR,CRISPRCasFinder,CRT matches to MK016501 (Mycobacterium phage Nebkiss, complete genome) position: , mismatch: 7, identity: 0.781

gccattaaccgtgcgttgcgtcaggttgatcc	CRISPR spacer
tccgataagcttgcgttgcgtcaggttgttac	Protospacer
 **. *** * ***************** * *

3. spacer 1.3|1923872|32|NZ_CP045766|PILER-CR,CRISPRCasFinder,CRT matches to NC_026590 (Mycobacterium phage Gaia, complete genome) position: , mismatch: 7, identity: 0.781

gccattaaccgtgcgttgcgtcaggttgatcc	CRISPR spacer
tccgataagcttgcgttgcgtcaggttgttac	Protospacer
 **. *** * ***************** * *

4. spacer 1.6|1924055|32|NZ_CP045766|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP016541 (Planococcus versutus strain L10.15 plasmid pPS15-1, complete sequence) position: , mismatch: 7, identity: 0.781

ttattcctgaaaatcctaatcttct-atttgta	CRISPR spacer
ttttttctgaaaatcctaatcttatgacttac-	Protospacer
** **.***************** * *.**..

5. spacer 2.8|1941224|32|NZ_CP045766|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP053574 (Citrobacter sp. TSA-1 plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.781

gatatattcagcgatatactaacggaattaat	CRISPR spacer
aatatattcagagatatactaacgggcacaac	Protospacer
.********** *************.  .**.

6. spacer 2.8|1941224|32|NZ_CP045766|PILER-CR,CRISPRCasFinder,CRT matches to HE858210 (Enterobacteria phage RB43, isolate RB43-GVA complete genome) position: , mismatch: 7, identity: 0.781

gatatattcagcgatatactaacggaattaat	CRISPR spacer
gatatattcaacgatatactcacggcgtgatg	Protospacer
**********.********* **** .* *

7. spacer 2.8|1941224|32|NZ_CP045766|PILER-CR,CRISPRCasFinder,CRT matches to MT334653 (Buttiauxella phage vB_ButM_GuL6, complete genome) position: , mismatch: 7, identity: 0.781

gatatattcagcgatatactaacggaattaat	CRISPR spacer
gatatattcaacgatatactcacggcgtgatg	Protospacer
**********.********* **** .* *

8. spacer 2.8|1941224|32|NZ_CP045766|PILER-CR,CRISPRCasFinder,CRT matches to HE981739 (Enterobacteria phage RB43, isolate RB43-GVA orf057::gfp complete genome) position: , mismatch: 7, identity: 0.781

gatatattcagcgatatactaacggaattaat	CRISPR spacer
gatatattcaacgatatactcacggcgtgatg	Protospacer
**********.********* **** .* *

9. spacer 2.8|1941224|32|NZ_CP045766|PILER-CR,CRISPRCasFinder,CRT matches to NC_007023 (Enterobacteria phage RB43, complete genome) position: , mismatch: 7, identity: 0.781

gatatattcagcgatatactaacggaattaat	CRISPR spacer
gatatattcaacgatatactcacggcgtgatg	Protospacer
**********.********* **** .* *

10. spacer 1.4|1923933|32|NZ_CP045766|PILER-CR,CRISPRCasFinder,CRT matches to MT682714 (Escherichia phage vB_EcoM_Lutter, complete genome) position: , mismatch: 8, identity: 0.75

tctaatcagtataatgaagagactttaattaa	CRISPR spacer
aatcattcatataataaagatactttaattaa	Protospacer
  * **. .******.**** ***********

11. spacer 1.4|1923933|32|NZ_CP045766|PILER-CR,CRISPRCasFinder,CRT matches to MK373787 (Escherichia phage vB_EcoM_G8, complete genome) position: , mismatch: 8, identity: 0.75

tctaatcagtataatgaagagactttaattaa	CRISPR spacer
aatcattcatataataaagatactttaattaa	Protospacer
  * **. .******.**** ***********

12. spacer 1.5|1923994|32|NZ_CP045766|PILER-CR,CRISPRCasFinder,CRT matches to NC_009507 (Sphingomonas wittichii RW1 plasmid pSWIT01, complete sequence) position: , mismatch: 8, identity: 0.75

--acaattcaggacgtgctgatttctgggctggt	CRISPR spacer
ctgcagct--ggacgtgctgatttcccggctgga	Protospacer
  .**..*  ***************. ******

13. spacer 1.6|1924055|32|NZ_CP045766|PILER-CR,CRISPRCasFinder,CRT matches to AP014314 (Uncultured Mediterranean phage uvMED isolate uvMED-GF-U-MedDCM-OCT-S31-C24, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 8, identity: 0.75

ttattcctgaaaatcctaatcttctatttgta	CRISPR spacer
ttcctcttgaaaatcataatcttctattaact	Protospacer
** .**.******** ************ ..

14. spacer 1.10|1924299|32|NZ_CP045766|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP006589 (Hymenobacter sp. APR13 plasmid pHB, complete sequence) position: , mismatch: 8, identity: 0.75

gttcgccctcggccagcgtgtaaaacttgatt	CRISPR spacer
ctacttcctcggccagcgtgggaaacttgaag	Protospacer
 * * .************** .********

15. spacer 2.2|1940858|32|NZ_CP045766|PILER-CR,CRISPRCasFinder,CRT matches to MN694010 (Marine virus AFVG_250M212, complete genome) position: , mismatch: 8, identity: 0.75

gggtatacgttacaccgggcaaatgtggtaca	CRISPR spacer
aagaaactgttacaccgggaaaaggtggtaca	Protospacer
..* *  .*********** *** ********

16. spacer 2.14|1941590|32|NZ_CP045766|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP018229 (Rhizobium leguminosarum strain Vaf-108 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.75

tacaggttgccatcggcccccattccagccaa	CRISPR spacer
cgctggcggccatcgacccccattccggccat	Protospacer
..* **. *******.**********.****

17. spacer 2.14|1941590|32|NZ_CP045766|PILER-CR,CRISPRCasFinder,CRT matches to NC_012848 (Rhizobium leguminosarum bv. trifolii WSM1325 plasmid pR132501, complete sequence) position: , mismatch: 8, identity: 0.75

tacaggttgccatcggcccccattccagccaa	CRISPR spacer
cgctggcggccatcgacccccattccggccat	Protospacer
..* **. *******.**********.****

18. spacer 1.3|1923872|32|NZ_CP045766|PILER-CR,CRISPRCasFinder,CRT matches to MF150911 (Ralstonia phage DU_RP_II, complete genome) position: , mismatch: 9, identity: 0.719

gccattaaccgtgcgttgcgtcaggttgatcc	CRISPR spacer
cgcgctaaccgtgcgttgcgtctgtttgacga	Protospacer
  *..***************** * ****.

19. spacer 1.3|1923872|32|NZ_CP045766|PILER-CR,CRISPRCasFinder,CRT matches to MN996301 (Ralstonia phage RpY1, complete genome) position: , mismatch: 9, identity: 0.719

gccattaaccgtgcgttgcgtcaggttgatcc	CRISPR spacer
cgcgctaaccgtgcgttgcgtctgtttgacga	Protospacer
  *..***************** * ****.

20. spacer 1.10|1924299|32|NZ_CP045766|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP045074 (Paracoccus kondratievae strain BJQ0001 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.719

gttcgccctcggccagcgtgtaaaacttgatt	CRISPR spacer
caaggtcctcggccagcgtgttaaccttggct	Protospacer
    *.*************** ** ****..*

21. spacer 1.11|1924360|32|NZ_CP045766|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP019362 (Borrelia turicatae 91E135 isolate Oz1 plasmid cp31, complete sequence) position: , mismatch: 9, identity: 0.719

ccaataattaaacgttgcatttgttgcttcgg	CRISPR spacer
aaaataaataaacgttgcttttgttcatttat	Protospacer
  ***** ********** ******  **..

22. spacer 2.9|1941285|32|NZ_CP045766|PILER-CR,CRISPRCasFinder,CRT matches to AP013405 (Uncultured Mediterranean phage uvMED DNA, complete genome, group G15, isolate: uvMED-CGR-U-MedDCM-OCT-S42-C63) position: , mismatch: 9, identity: 0.719

cgtttctcaatggtgggatggcgcaaatgaac	CRISPR spacer
tatatcacaatggtgggatggtgcaaatagtg	Protospacer
..* ** **************.******..

23. spacer 2.14|1941590|32|NZ_CP045766|PILER-CR,CRISPRCasFinder,CRT matches to NC_013930 (Thioalkalivibrio sp. K90mix plasmid pTK9001, complete sequence) position: , mismatch: 9, identity: 0.719

tacaggttgccatcggcccccattccagccaa	CRISPR spacer
gatcggttcccagcggcccccattccatcagg	Protospacer
 *. **** *** ************** * ..

24. spacer 2.15|1941651|32|NZ_CP045766|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP035192 (Bacillus subtilis strain SRCM104011 plasmid unnamed1) position: , mismatch: 9, identity: 0.719

gaatccagttgccgtttaaatcaa----ttcgcgcc	CRISPR spacer
taatccagctgccgttaaaatcaaaaatatca----	Protospacer
 *******.******* *******     **.

25. spacer 1.16|1924665|32|NZ_CP045766|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP014942 (Rhodococcus sp. BH4 plasmid, complete sequence) position: , mismatch: 10, identity: 0.688

cttccggatcatcctttggtaacggctctgac	CRISPR spacer
gtgccggatcaacctttggtcacggcagaact	Protospacer
 * ******** ******** *****   . .

26. spacer 1.17|1924726|32|NZ_CP045766|CRISPRCasFinder,CRT matches to MT884010 (Escherichia phage vb_EcoM_bov22_2, complete genome) position: , mismatch: 10, identity: 0.688

gcagatgaaaaatactgcggttgggtgccctc	CRISPR spacer
ctgattgaaaaatactacggtggggtgctgac	Protospacer
 ... ***********.**** ******.  *

27. spacer 1.17|1924726|32|NZ_CP045766|CRISPRCasFinder,CRT matches to MT884008 (Escherichia phage vb_EcoM_bov10K2, complete genome) position: , mismatch: 10, identity: 0.688

gcagatgaaaaatactgcggttgggtgccctc	CRISPR spacer
ctgattgaaaaatactacggtggggtgctgac	Protospacer
 ... ***********.**** ******.  *

28. spacer 1.17|1924726|32|NZ_CP045766|CRISPRCasFinder,CRT matches to MT884009 (Escherichia phage vb_EcoM_bov11CS3, complete genome) position: , mismatch: 10, identity: 0.688

gcagatgaaaaatactgcggttgggtgccctc	CRISPR spacer
ctgattgaaaaatactacggtggggtgctgac	Protospacer
 ... ***********.**** ******.  *

29. spacer 1.17|1924726|32|NZ_CP045766|CRISPRCasFinder,CRT matches to MT884011 (Escherichia phage vb_EcoM_bov25_3, complete genome) position: , mismatch: 10, identity: 0.688

gcagatgaaaaatactgcggttgggtgccctc	CRISPR spacer
ctgattgaaaaatactacggtggggtgctgac	Protospacer
 ... ***********.**** ******.  *

30. spacer 1.17|1924726|32|NZ_CP045766|CRISPRCasFinder,CRT matches to KT001917 (Escherichia phage Murica, complete genome) position: , mismatch: 10, identity: 0.688

gcagatgaaaaatactgcggttgggtgccctc	CRISPR spacer
ctgattgaaaaatactacggtggggtgctgac	Protospacer
 ... ***********.**** ******.  *

31. spacer 2.4|1940980|32|NZ_CP045766|PILER-CR,CRISPRCasFinder,CRT matches to KT962247 (Cellulophaga phage phi17:2_18, complete genome) position: , mismatch: 10, identity: 0.688

ttgggcgactccaacgttataaaaatcaaaaa	CRISPR spacer
atttttaactctaacgttattaaaatcaaagt	Protospacer
 *   ..****.******** *********.

32. spacer 2.4|1940980|32|NZ_CP045766|PILER-CR,CRISPRCasFinder,CRT matches to NC_021798 (Cellulophaga phage phi17:2, complete genome) position: , mismatch: 10, identity: 0.688

ttgggcgactccaacgttataaaaatcaaaaa	CRISPR spacer
atttttaactctaacgttattaaaatcaaagt	Protospacer
 *   ..****.******** *********.

33. spacer 2.14|1941590|32|NZ_CP045766|PILER-CR,CRISPRCasFinder,CRT matches to NC_007762 (Rhizobium etli CFN 42 plasmid p42a, complete sequence) position: , mismatch: 10, identity: 0.688

tacaggttgccatcggcccccattccagccaa	CRISPR spacer
cgcaggttgccatcgtcccacattcagcggga	Protospacer
..************* *** ***** .   .*

34. spacer 2.17|1941773|32|NZ_CP045766|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP032686 (Rhizobium sp. CCGE531 plasmid pRCCGE531c, complete sequence) position: , mismatch: 10, identity: 0.688

aattcaatacggaggggtgtcaatggatatca	CRISPR spacer
agcgacctaccgaggggtgtcaatgcatattc	Protospacer
*..    *** ************** ****.

35. spacer 2.17|1941773|32|NZ_CP045766|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP032691 (Rhizobium sp. CCGE532 plasmid pRCCGE532c, complete sequence) position: , mismatch: 10, identity: 0.688

aattcaatacggaggggtgtcaatggatatca	CRISPR spacer
agcgacctaccgaggggtgtcaatgcatattc	Protospacer
*..    *** ************** ****.

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1618598 : 1655542

Salmonella_phage(56.1%)

integrase,head,holin,tail,tRNA,lysis,capsid,plate,terminase,portal

attL 1618479:1618527|attR 1649175:1649223

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1618479:1618527	attL	NA	NA	NA	NA
WP_000218395.1\|1618598_1619636_-\|integrase	tyrosine-type recombinase/integrase	A0A218M4I3	Erwinia_phage	1.1e-198	97.1
WP_001217271.1\|1619635_1620214_-	phage repressor protein CI	A0A218M4J1	Erwinia_phage	3.5e-64	63.0
WP_000135597.1\|1620344_1620608_+	hypothetical protein	A0A218M4I5	Erwinia_phage	3.3e-38	89.7
WP_000459332.1\|1620638_1621148_+	phage regulatory CII family protein	A0A0M4QWN1	Salmonella_phage	6.2e-89	98.8
WP_000920168.1\|1621155_1621383_+	DUF2724 domain-containing protein	A0A0M4RTI3	Salmonella_phage	2.1e-36	97.3
WP_000085639.1\|1621369_1621570_+	hypothetical protein	A0A0M5M7U3	Salmonella_phage	2.3e-31	98.5
WP_001246236.1\|1621639_1621867_+	DUF2732 domain-containing protein	A0A0M3UL87	Salmonella_phage	2.6e-31	98.7
WP_000752604.1\|1621866_1622091_+	TraR/DksA family transcriptional regulator	Q6K1F5	Salmonella_virus	6.5e-35	100.0
WP_153655389.1\|1622112_1622706_-	hypothetical protein	NA	NA	NA	NA
WP_000503833.1\|1622731_1624951_+	replication endonuclease	A0A218M4H2	Erwinia_phage	0.0e+00	94.6
WP_000373435.1\|1625068_1625509_+	DinI family protein	A0A218M4I0	Erwinia_phage	2.6e-67	94.2
WP_000381894.1\|1625591_1626323_+	hypothetical protein	Q37850	Escherichia_phage	5.1e-129	93.8
WP_000033213.1\|1626433_1626982_+	hypothetical protein	NA	NA	NA	NA
WP_000338485.1\|1627361_1628366_-	hypothetical protein	NA	NA	NA	NA
WP_000517958.1\|1628443_1629490_-\|portal	phage portal protein	S4TNX7	Salmonella_phage	4.4e-190	99.4
WP_000156054.1\|1629489_1631259_-\|terminase	terminase ATPase subunit family protein	S4TT96	Salmonella_phage	0.0e+00	99.8
WP_001085936.1\|1631424_1632279_+\|capsid	capsid scaffolding protein	S4TP53	Salmonella_phage	8.9e-157	98.6
WP_001248604.1\|1632354_1633422_+\|capsid	phage major capsid protein, P2 family	O80304	Escherichia_phage	2.3e-178	89.5
WP_000203474.1\|1633425_1634175_+\|terminase	terminase endonuclease subunit	Q6K1I5	Salmonella_virus	1.8e-113	88.0
WP_000214255.1\|1634268_1634775_+\|head	head completion/stabilization protein	S4TNY1	Salmonella_phage	1.3e-91	100.0
WP_015703020.1\|1634774_1634978_+\|tail	tail protein X	A0A0M3ULF4	Salmonella_phage	4.0e-31	98.5
WP_000134659.1\|1634981_1635278_+\|holin	holin	S4TP56	Salmonella_phage	4.4e-47	100.0
WP_001144116.1\|1635264_1635762_+	glycoside hydrolase family 104 protein	S4TUB1	Salmonella_phage	1.2e-92	99.4
WP_000866102.1\|1635758_1636172_+\|lysis	LysB family phage lysis regulatory protein	S4TRW3	Salmonella_phage	2.6e-45	100.0
WP_001394645.1\|1636143_1636317_+	hypothetical protein	S4TNY4	Salmonella_phage	2.8e-25	98.2
WP_001169076.1\|1636279_1636747_+\|tail	phage tail protein	S4TTA5	Salmonella_phage	2.5e-84	99.4
WP_001293103.1\|1636739_1637189_+	phage virion morphogenesis protein	A0A0M3UL83	Salmonella_phage	2.5e-73	99.3
WP_001094753.1\|1637257_1637899_+\|plate	phage baseplate assembly protein V	Q6K1H6	Salmonella_virus	3.5e-113	98.1
WP_000127150.1\|1637895_1638243_+\|plate	baseplate assembly protein	A0A0M4RE59	Salmonella_phage	2.1e-56	98.3
WP_000246675.1\|1638249_1639158_+\|plate	baseplate assembly protein	A0A1J0I2M3	Salmonella_phage	1.3e-158	99.0
WP_001000071.1\|1639150_1639681_+\|tail	phage tail protein I	Q6K1H3	Salmonella_virus	7.8e-103	98.3
WP_000104701.1\|1639691_1641668_+\|tail	tail protein	S4TP62	Salmonella_phage	0.0e+00	98.6
WP_000122994.1\|1641680_1642229_+\|tail	tail fiber assembly protein	S4TUB9	Salmonella_phage	1.7e-100	99.5
WP_001279032.1\|1642363_1643551_+\|tail	phage tail sheath protein	Q6K1H0	Salmonella_virus	5.8e-223	99.5
WP_001207675.1\|1643566_1644085_+\|tail	phage major tail tube protein	S4TNZ0	Salmonella_phage	6.5e-94	100.0
WP_001029727.1\|1644147_1644483_+\|tail	phage tail assembly protein	A0A0M4S5P8	Salmonella_phage	1.8e-52	100.0
WP_085984508.1\|1644479_1644635_+\|tail	GpE family phage tail protein	Q6K1G8	Salmonella_virus	8.8e-23	98.0
WP_000069527.1\|1644627_1647069_+\|tail	phage tail tape measure protein	S4TP64	Salmonella_phage	0.0e+00	94.1
WP_000978861.1\|1647083_1647569_+\|tail	phage tail protein	Q6K1G5	Salmonella_virus	1.0e-85	100.0
WP_000627825.1\|1647565_1648735_+	phage late control D family protein	A0A0M5M5V5	Salmonella_phage	1.9e-210	97.4
WP_000468307.1\|1648801_1649020_+	DNA-binding transcriptional regulator	A0A2I8TV89	Erwinia_phage	9.5e-39	98.6
WP_000237774.1\|1649378_1649885_+	G/U mismatch-specific DNA glycosylase	NA	NA	NA	NA
1649175:1649223	attR	NA	NA	NA	NA
WP_001519776.1\|1650029_1651877_-	RNA polymerase sigma factor RpoD	A0A2I7SAT0	Vibrio_phage	8.4e-35	33.7
WP_000918858.1\|1652026_1653772_-	DNA primase	A0A0K1LMQ9	Caulobacter_phage	4.7e-72	38.4
WP_001144069.1\|1654075_1654291_-	30S ribosomal protein S21	NA	NA	NA	NA
WP_001264346.1\|1654528_1655542_+\|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	A0A0R6PI74	Moraxella_phage	4.5e-107	58.3

DBSCAN-SWA_2

2582396 : 2590986

Enterobacteria_phage(66.67%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000569161.1\|2582396_2583344_+	ABC transporter ATP-binding protein	F2Y1V5	Organic_Lake_phycodnavirus	6.2e-10	27.5
WP_000824740.1\|2583327_2584059_+	ABC transporter permease	NA	NA	NA	NA
WP_001234243.1\|2584039_2584147_-	protein YohO	NA	NA	NA	NA
WP_001240383.1\|2584206_2584947_-	HTH-type transcriptional regulator MlrA	Q9EYF2	Enterobacteria_phage	1.3e-100	88.1
WP_000272843.1\|2585169_2586855_+	sensor histidine kinase	Q9EYF3	Enterobacteria_phage	4.6e-274	89.3
WP_000598645.1\|2586851_2587571_+	two-component system response regulator BtsR	NA	NA	NA	NA
WP_000950424.1\|2587617_2588088_+	DUF1456 family protein	Q9EYF4	Enterobacteria_phage	1.1e-76	91.7
WP_000703144.1\|2588226_2588685_-	YehR family lipoprotein	Q9EYF5	Enterobacteria_phage	7.1e-52	69.9
WP_000195328.1\|2588952_2590986_-\|tRNA	methionine--tRNA ligase	A0A1V0SDF2	Indivirus	2.8e-55	27.4

DBSCAN-SWA_3

3702704 : 3726716

Salmonella_phage(50.0%)

integrase,holin

attL 3697663:3697722|attR 3726805:3726882

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
3697663:3697722	attL	NA	NA	NA	NA
WP_141024939.1\|3702704_3703208_-	T3SS effector NleG family protein	B6DZB9	Enterobacteria_phage	1.7e-19	45.6
WP_015702803.1\|3703654_3704767_-	hypothetical protein	NA	NA	NA	NA
WP_000480907.1\|3704768_3705026_-	hypothetical protein	NA	NA	NA	NA
WP_001111091.1\|3705110_3705461_-	HNH endonuclease	Q8HA82	Salmonella_phage	8.1e-48	74.8
WP_000819054.1\|3705563_3705869_-	hypothetical protein	Q8HA83	Salmonella_phage	6.2e-20	53.1
WP_001222152.1\|3705957_3706368_-	hypothetical protein	NA	NA	NA	NA
WP_001109263.1\|3706767_3707298_-	KilA-N domain-containing protein	A0A2H4FQV0	Salmonella_phage	9.9e-90	96.6
WP_001050816.1\|3707559_3708102_-	DUF2514 domain-containing protein	NA	NA	NA	NA
WP_000372743.1\|3708098_3708713_-	glycoside hydrolase family 19 protein	Q8HA86	Salmonella_phage	2.7e-107	92.6
WP_000226306.1\|3708712_3708994_-\|holin	phage holin family protein	K7PKN9	Enterobacterial_phage	3.3e-36	80.6
WP_001294877.1\|3708980_3709370_-	membrane protein	K7PHB9	Enterobacterial_phage	1.4e-40	71.8
WP_141024936.1\|3709607_3710309_-	pertussis toxin-like subunit ArtA	A0A0U2KD26	Escherichia_phage	5.0e-81	66.0
WP_141024934.1\|3710379_3710808_-	pertussis toxin	NA	NA	NA	NA
WP_000509712.1\|3711737_3711917_+	hypothetical protein	NA	NA	NA	NA
WP_000151608.1\|3711927_3712428_+	type II toxin-antitoxin system death-on-curing family toxin	NA	NA	NA	NA
WP_000211402.1\|3712569_3713142_-	ORF6N domain-containing protein	A0A2R2Z302	Escherichia_phage	3.5e-40	71.1
WP_000793789.1\|3713410_3714082_-	antitermination protein	I6PDF8	Cronobacter_phage	1.5e-63	57.1
WP_000929795.1\|3714470_3715073_-	DUF1367 family protein	S4TTI0	Salmonella_phage	1.3e-109	99.0
WP_015702798.1\|3715107_3715356_-	hypothetical protein	A0A0U2C0C8	Salmonella_phage	3.6e-42	98.8
WP_001217667.1\|3715472_3715706_-	DinI family protein	H6WRY5	Salmonella_phage	7.3e-37	98.7
WP_000128278.1\|3715891_3716638_-	hypothetical protein	A0A0P0ZDC0	Stx2-converting_phage	4.5e-64	61.8
WP_000900558.1\|3716710_3717625_-	antirepressor protein	I6S627	Salmonella_phage	1.8e-59	48.9
WP_000409416.1\|3717611_3717779_-	hypothetical protein	G9L6D7	Escherichia_phage	6.6e-16	75.5
WP_000085729.1\|3717901_3718333_+	Arc family DNA-binding protein	G9L6D6	Escherichia_phage	9.7e-27	55.8
WP_024134978.1\|3718619_3718946_-	hypothetical protein	NA	NA	NA	NA
WP_000025837.1\|3719955_3720213_-	DUF4752 family protein	T1S9K2	Salmonella_phage	1.8e-36	89.4
WP_000788824.1\|3720226_3720919_-	hypothetical protein	G8C7U6	Escherichia_phage	4.3e-77	58.9
WP_000024047.1\|3720915_3721821_-	replication protein	A0A0M5M7Y1	Salmonella_phage	1.3e-174	99.0
WP_015702794.1\|3721912_3722287_-	hypothetical protein	S4TTD7	Salmonella_phage	3.3e-63	98.4
WP_000145711.1\|3722252_3722480_-	Rha family transcriptional regulator	K7PKS2	Enterobacteria_phage	1.5e-34	95.9
WP_000214259.1\|3722493_3722961_+	helix-turn-helix domain-containing protein	K7PHG0	Enterobacteria_phage	4.7e-67	85.2
WP_000097141.1\|3723132_3723981_+	hypothetical protein	NA	NA	NA	NA
WP_000846936.1\|3723977_3724784_+	DUF3037 domain-containing protein	NA	NA	NA	NA
WP_000196400.1\|3725471_3725696_+	DUF4224 domain-containing protein	NA	NA	NA	NA
WP_015702793.1\|3725696_3726716_+\|integrase	tyrosine-type recombinase/integrase	A0A192Y7M7	Salmonella_phage	8.3e-93	53.5
3726805:3726882	attR	NA	NA	NA	NA

DBSCAN-SWA_4

3811394 : 3885764

Salmonella_phage(25.0%)

tail,tRNA,plate,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000886701.1\|3811394_3812687_-\|tRNA	serine--tRNA ligase	A0A1B1IVT2	uncultured_Mediterranean_phage	8.6e-95	44.5
WP_000067777.1\|3812943_3814287_-	replication-associated recombination protein RarA	G3MBE0	Bacillus_virus	1.8e-79	40.9
WP_015702786.1\|3814296_3814908_-	outer membrane lipoprotein chaperone LolA	NA	NA	NA	NA
WP_000076975.1\|3815050_3819022_-	DNA translocase FtsK	S5VNE3	Mycobacterium_phage	2.8e-88	49.5
WP_000228469.1\|3819156_3819651_-	leucine-responsive transcriptional regulator Lrp	NA	NA	NA	NA
WP_000537395.1\|3820197_3821166_+	thioredoxin-disulfide reductase	A0A2I2L5E1	Orpheovirus	7.2e-62	44.6
WP_001044529.1\|3821280_3823047_+	cysteine/glutathione ABC transporter permease/ATP-binding protein CydD	W8CYL7	Bacillus_phage	2.0e-22	25.3
WP_001202240.1\|3823047_3824769_+	cysteine/glutathione ABC transporter ATP-binding protein/permease CydC	W8CYL7	Bacillus_phage	1.3e-13	23.1
WP_001241653.1\|3824813_3825518_+\|tRNA	leucyl/phenylalanyl-tRNA--protein transferase	NA	NA	NA	NA
WP_001040187.1\|3825810_3826029_+	translation initiation factor IF-1	NA	NA	NA	NA
WP_000597933.1\|3826267_3827179_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_000809976.1\|3827287_3828148_+	pirin family protein	NA	NA	NA	NA
WP_000203410.1\|3828167_3828845_+	hydrolase	NA	NA	NA	NA
WP_000934068.1\|3829465_3831742_-\|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	A0A223W0B1	Agrobacterium_phage	8.1e-165	42.2
WP_000520786.1\|3831772_3832093_-\|protease	ATP-dependent Clp protease adapter ClpS	A0A1B1IT64	uncultured_Mediterranean_phage	3.5e-13	45.7
WP_000447498.1\|3832416_3832638_+	cold shock-like protein CspD	A0A2H4N7Y6	Lake_Baikal_phage	9.3e-18	64.2
WP_000125868.1\|3832788_3834735_-	macrolide ABC transporter ATP-binding protein/permease MacB	G9BWD6	Planktothrix_phage	3.1e-40	41.7
WP_001201757.1\|3834731_3835850_-	macrolide transporter subunit MacA	A0A140XAI1	Dickeya_phage	1.8e-08	38.1
WP_000192850.1\|3835995_3836946_+	DUF535 domain-containing protein	NA	NA	NA	NA
WP_000599777.1\|3836942_3838601_-	ATP-dependent endonuclease	NA	NA	NA	NA
WP_000490988.1\|3838801_3839701_+	lysine exporter LysO family protein	NA	NA	NA	NA
WP_000458840.1\|3839843_3841496_+	hydroxylamine reductase	NA	NA	NA	NA
WP_000178699.1\|3841506_3842475_+	NADH oxidoreductase	NA	NA	NA	NA
WP_000815328.1\|3842666_3844385_+	ubiquinone-dependent pyruvate dehydrogenase	A0A0P0YLY7	Yellowstone_lake_phycodnavirus	1.3e-29	23.8
WP_000566417.1\|3844423_3845425_+	low-specificity L-threonine aldolase	NA	NA	NA	NA
WP_001136512.1\|3845435_3846869_+	SDR family oxidoreductase	NA	NA	NA	NA
WP_000866899.1\|3846964_3847978_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA
WP_001202301.1\|3847974_3848805_-	N-acetylmuramoyl-L-alanine amidase	A0A1B0UZW5	Roseobacter_phage	3.3e-07	30.1
WP_001160725.1\|3848801_3849125_-	heavy metal-binding domain-containing protein	NA	NA	NA	NA
WP_000701348.1\|3849726_3851499_+	DUF4116 domain-containing protein	NA	NA	NA	NA
WP_001270718.1\|3852259_3852775_+	lipoprotein	NA	NA	NA	NA
WP_000027180.1\|3852998_3853727_+	arginine ABC transporter ATP-binding protein ArtP	G9BWD6	Planktothrix_phage	8.7e-28	35.4
WP_000756594.1\|3853744_3854476_+	arginine ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_001001674.1\|3854482_3855199_+	arginine ABC transporter permease ArtQ	NA	NA	NA	NA
WP_000895391.1\|3855198_3855867_+	arginine ABC transporter permease ArtM	NA	NA	NA	NA
WP_000737541.1\|3856101_3856833_+	arginine ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_015702782.1\|3857009_3858422_+	hypothetical protein	NA	NA	NA	NA
WP_000644037.1\|3858507_3859995_-	sulfatase-like hydrolase/transferase	NA	NA	NA	NA
WP_015702781.1\|3860004_3860325_-	PTS sugar transporter subunit IIB	NA	NA	NA	NA
WP_000399312.1\|3860356_3861700_-	PTS sugar transporter subunit IIC	NA	NA	NA	NA
WP_001149768.1\|3861981_3863112_-	23S rRNA (uracil(747)-C(5))-methyltransferase RlmC	A0A1X9I6F4	Streptococcus_phage	7.4e-26	25.8
WP_000506267.1\|3863154_3863628_-	YbjO family protein	NA	NA	NA	NA
WP_000183361.1\|3863700_3864546_-	putrescine ABC transporter permease PotI	NA	NA	NA	NA
WP_000105458.1\|3864542_3865496_-	putrescine ABC transporter permease PotH	NA	NA	NA	NA
WP_001000692.1\|3865505_3866639_-	putrescine ABC transporter ATP-binding subunit PotG	G3M9Y6	Bacillus_virus	3.2e-29	34.9
WP_000126167.1\|3866724_3867837_-	spermidine/putrescine ABC transporter substrate-binding protein PotF	NA	NA	NA	NA
WP_000624815.1\|3868185_3868662_-	YbjN domain-containing protein	NA	NA	NA	NA
WP_000684312.1\|3868758_3869661_-	30S ribosomal protein S6--L-glutamate ligase	A0A1D7SR78	Cyanophage	2.6e-34	33.6
WP_001070124.1\|3869719_3870442_-	nitroreductase NfsA	NA	NA	NA	NA
WP_001259125.1\|3870425_3870716_-	YbjC family protein	NA	NA	NA	NA
WP_000495514.1\|3870885_3871149_+	GrxA family glutaredoxin	A0A2I7SAE2	Vibrio_phage	3.5e-27	70.5
WP_000681116.1\|3871180_3871558_-	membrane protein	NA	NA	NA	NA
WP_001024857.1\|3871829_3873515_+	aspartate:alanine antiporter	NA	NA	NA	NA
WP_000972393.1\|3873750_3873969_-	transcriptional activator Ogr/delta	Q53ZE7	Salmonella_virus	1.3e-19	71.6
WP_001102270.1\|3874059_3875112_-	phage late control D family protein	E5G6Q3	Salmonella_phage	4.0e-175	89.1
WP_000980410.1\|3875108_3875594_-\|tail	phage tail protein	E5G6Q2	Salmonella_phage	1.2e-73	90.7
WP_000763316.1\|3878562_3878682_-\|tail	GpE family phage tail protein	E5G6Q0	Salmonella_phage	1.8e-15	100.0
WP_001280962.1\|3878696_3878999_-\|tail	phage tail assembly protein	A0A1S6KZZ9	Salmonella_phage	2.5e-45	100.0
WP_162470497.1\|3880079_3880427_+	hypothetical protein	NA	NA	NA	NA
WP_000584703.1\|3880759_3881224_+\|tail	tail fiber assembly protein	B6SCW7	Bacteriophage	1.0e-18	42.0
WP_001285260.1\|3881445_3882603_-	acyltransferase	A0A088CPR9	Enterobacteria_phage	1.9e-29	29.1
WP_001086799.1\|3883911_3884517_-\|tail	phage tail protein I	E5G6N9	Salmonella_phage	5.0e-114	97.0
WP_000268334.1\|3884509_3885418_-\|plate	baseplate assembly protein	E5G6N8	Salmonella_phage	1.5e-157	98.0
WP_000177407.1\|3885404_3885764_-\|plate	baseplate assembly protein	E5G6N7	Salmonella_phage	1.8e-58	96.6

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP045766

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection