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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP045418 Pseudoalteromonas sp. THAF3 chromosome, complete genome 3 crisprs DEDDh,cas3,cas1,cas3-cas2,cas8f,cas5f,cas7f,cas6f,csa3,PD-DExK,RT,DinG 1 20 3 1
NZ_CP045419 Pseudoalteromonas sp. THAF3 plasmid pTHAF3_a, complete sequence 1 crisprs csa3,DinG 0 1 0 0

Results visualization

1. NZ_CP045418
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP045418_1 90761-90881 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP045418_2 456683-456812 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP045418_3 1133438-1137126 TypeI-F I-F
61 spacers
cas6f,cas7f,cas5f,cas8f,cas3-cas2,cas1,DEDDh

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
NZ_CP045418_3 3.27|1135027|32|NZ_CP045418|PILER-CR,CRISPRCasFinder,CRT 1135027-1135058 32 NZ_CP045418.1 1624889-1624920 0 1.0

1. spacer 3.27|1135027|32|NZ_CP045418|PILER-CR,CRISPRCasFinder,CRT matches to position: 1624889-1624920, mismatch: 0, identity: 1.0

gtgtcgcaaacgtgtagccaccgtcgaaagga	CRISPR spacer
gtgtcgcaaacgtgtagccaccgtcgaaagga	Protospacer
********************************

CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_CP045418_3 3.31|1135267|32|NZ_CP045418|PILER-CR,CRISPRCasFinder,CRT 1135267-1135298 32 MH779521 Lactococcus phage vB_Llc_bIBB94p4, complete genome 12684-12715 4 0.875
NZ_CP045418_3 3.14|1134247|32|NZ_CP045418|PILER-CR,CRISPRCasFinder,CRT 1134247-1134278 32 NC_047702 Uncultured phage_MedDCM-OCT-S35-C6 DNA, complete genome, group G8, isolate: uvMED-CGR-U-MedDCM-OCT-S35-C6 21780-21811 6 0.812
NZ_CP045418_3 3.31|1135267|32|NZ_CP045418|PILER-CR,CRISPRCasFinder,CRT 1135267-1135298 32 CP015514 Vibrio vulnificus strain FORC_036 plasmid unnamed, complete sequence 858530-858561 6 0.812
NZ_CP045418_3 3.31|1135267|32|NZ_CP045418|PILER-CR,CRISPRCasFinder,CRT 1135267-1135298 32 NC_001706 Lactococcus phage c2, complete genome 12338-12369 6 0.812
NZ_CP045418_3 3.31|1135267|32|NZ_CP045418|PILER-CR,CRISPRCasFinder,CRT 1135267-1135298 32 AY570986 Lactococcus bacteriophage Rc15 pL7 (L7), pL8 (L8), pL9 (L9), pL10 (L10), and pL11 (L11) genes, complete cds 887-918 6 0.812
NZ_CP045418_3 3.31|1135267|32|NZ_CP045418|PILER-CR,CRISPRCasFinder,CRT 1135267-1135298 32 L48605 Bacteriophage c2 complete genome 12338-12369 6 0.812
NZ_CP045418_3 3.10|1134007|32|NZ_CP045418|PILER-CR,CRISPRCasFinder,CRT 1134007-1134038 32 NZ_CP049249 Rhizobium rhizoryzae strain DSM 29514 plasmid unnamed3, complete sequence 815008-815039 7 0.781
NZ_CP045418_3 3.11|1134067|32|NZ_CP045418|PILER-CR,CRISPRCasFinder,CRT 1134067-1134098 32 MN369756 Gordonia phage Anon, complete genome 15884-15915 7 0.781
NZ_CP045418_3 3.11|1134067|32|NZ_CP045418|PILER-CR,CRISPRCasFinder,CRT 1134067-1134098 32 NZ_CP025436 Gordonia sp. YC-JH1 plasmid pGOR1, complete sequence 63229-63260 7 0.781
NZ_CP045418_3 3.14|1134247|32|NZ_CP045418|PILER-CR,CRISPRCasFinder,CRT 1134247-1134278 32 MN698242 Pelagibacter phage HTVC103P, complete genome 37957-37988 7 0.781
NZ_CP045418_3 3.19|1134547|32|NZ_CP045418|PILER-CR,CRISPRCasFinder,CRT 1134547-1134578 32 NC_022368 Bacillaceae bacterium JMAK1 plasmid pGIAK1, complete sequence 3375-3406 7 0.781
NZ_CP045418_3 3.31|1135267|32|NZ_CP045418|PILER-CR,CRISPRCasFinder,CRT 1135267-1135298 32 MH779519 Lactococcus phage vB_LLc_bIBB14, complete genome 12365-12396 7 0.781
NZ_CP045418_3 3.31|1135267|32|NZ_CP045418|PILER-CR,CRISPRCasFinder,CRT 1135267-1135298 32 MH779520 Lactococcus phage vB_Llc_bIBB27, complete genome 12366-12397 7 0.781
NZ_CP045418_3 3.31|1135267|32|NZ_CP045418|PILER-CR,CRISPRCasFinder,CRT 1135267-1135298 32 MH779525 Lactococcus phage vB_Llc_bIBBE1, complete genome 12353-12384 7 0.781
NZ_CP045418_3 3.32|1135327|32|NZ_CP045418|PILER-CR,CRISPRCasFinder,CRT 1135327-1135358 32 NC_007103 Bacillus cereus E33L plasmid pE33L466, complete sequence 350094-350125 7 0.781
NZ_CP045418_3 3.32|1135327|32|NZ_CP045418|PILER-CR,CRISPRCasFinder,CRT 1135327-1135358 32 NZ_CP009967 Bacillus cereus E33L plasmid pBCO_1, complete sequence 438293-438324 7 0.781
NZ_CP045418_3 3.38|1135687|32|NZ_CP045418|PILER-CR,CRISPRCasFinder,CRT 1135687-1135718 32 NZ_CP017076 Novosphingobium resinovorum strain SA1 plasmid pSA1, complete sequence 1512236-1512267 7 0.781
NZ_CP045418_3 3.38|1135687|32|NZ_CP045418|PILER-CR,CRISPRCasFinder,CRT 1135687-1135718 32 NZ_CP016452 Sinorhizobium sp. RAC02 plasmid pBSY16_1, complete sequence 314989-315020 7 0.781
NZ_CP045418_3 3.55|1136647|32|NZ_CP045418|CRISPRCasFinder,CRT,PILER-CR 1136647-1136678 32 NZ_LR214954 Mycoplasma neurolyticum strain NCTC10166 plasmid 4 15440-15471 7 0.781
NZ_CP045418_3 3.11|1134067|32|NZ_CP045418|PILER-CR,CRISPRCasFinder,CRT 1134067-1134098 32 NZ_CP049249 Rhizobium rhizoryzae strain DSM 29514 plasmid unnamed3, complete sequence 1045919-1045950 8 0.75
NZ_CP045418_3 3.11|1134067|32|NZ_CP045418|PILER-CR,CRISPRCasFinder,CRT 1134067-1134098 32 NZ_KY000047 Agrobacterium genomosp. 1 strain CFBP2516 plasmid pTi_CFBP2516, complete sequence 178594-178625 8 0.75
NZ_CP045418_3 3.38|1135687|32|NZ_CP045418|PILER-CR,CRISPRCasFinder,CRT 1135687-1135718 32 NZ_CP022363 Azospirillum sp. TSH58 plasmid TSH58_p03, complete sequence 738526-738557 8 0.75
NZ_CP045418_3 3.44|1136047|32|NZ_CP045418|PILER-CR,CRISPRCasFinder,CRT 1136047-1136078 32 NZ_CP010865 Marinovum algicola DG 898 plasmid pMaD10, complete sequence 15073-15104 8 0.75
NZ_CP045418_3 3.6|1133766|32|NZ_CP045418|PILER-CR,CRISPRCasFinder,CRT 1133766-1133797 32 NZ_CP014676 Kozakia baliensis strain DSM 14400 plasmid pKB14400_2, complete sequence 96385-96416 9 0.719
NZ_CP045418_3 3.11|1134067|32|NZ_CP045418|PILER-CR,CRISPRCasFinder,CRT 1134067-1134098 32 NZ_CP015096 Pelagibaca abyssi strain JLT2014 plasmid pPABY8, complete sequence 3826-3857 9 0.719
NZ_CP045418_3 3.11|1134067|32|NZ_CP045418|PILER-CR,CRISPRCasFinder,CRT 1134067-1134098 32 NZ_CP024310 Sinorhizobium fredii strain NXT3 plasmid pSfreNXT3c, complete sequence 1118272-1118303 9 0.719
NZ_CP045418_3 3.11|1134067|32|NZ_CP045418|PILER-CR,CRISPRCasFinder,CRT 1134067-1134098 32 NZ_CP023064 Sinorhizobium sp. CCBAU 05631 plasmid pSS05631b, complete sequence 937102-937133 9 0.719
NZ_CP045418_3 3.11|1134067|32|NZ_CP045418|PILER-CR,CRISPRCasFinder,CRT 1134067-1134098 32 MH744420 Streptomyces phage Kromp, complete genome 11072-11103 9 0.719
NZ_CP045418_3 3.14|1134247|32|NZ_CP045418|PILER-CR,CRISPRCasFinder,CRT 1134247-1134278 32 MN693953 Marine virus AFVG_250M577, complete genome 16289-16320 9 0.719
NZ_CP045418_3 3.36|1135567|32|NZ_CP045418|PILER-CR,CRISPRCasFinder,CRT 1135567-1135598 32 NC_011409 Haemophilus influenzae plasmid ICEhin1056, complete sequence 41265-41296 9 0.719
NZ_CP045418_3 3.38|1135687|32|NZ_CP045418|PILER-CR,CRISPRCasFinder,CRT 1135687-1135718 32 CP011998 Ralstonia solanacearum strain YC45 plasmid, complete sequence 739744-739775 9 0.719
NZ_CP045418_3 3.43|1135987|32|NZ_CP045418|PILER-CR,CRISPRCasFinder,CRT 1135987-1136018 32 NZ_CP015322 Mesorhizobium amorphae CCNWGS0123 plasmid pM0123d, complete sequence 629554-629585 9 0.719
NZ_CP045418_3 3.44|1136047|32|NZ_CP045418|PILER-CR,CRISPRCasFinder,CRT 1136047-1136078 32 NZ_CP023068 Ensifer sojae CCBAU 05684 plasmid pSJ05684b, complete sequence 949789-949820 9 0.719
NZ_CP045418_3 3.44|1136047|32|NZ_CP045418|PILER-CR,CRISPRCasFinder,CRT 1136047-1136078 32 NC_009958 Dinoroseobacter shibae DFL 12 = DSM 16493 plasmid pDSHI04, complete sequence 46535-46566 9 0.719
NZ_CP045418_3 3.47|1136227|32|NZ_CP045418|PILER-CR,CRISPRCasFinder,CRT 1136227-1136258 32 CP053919 Serratia marcescens strain LY1 plasmid unnamed1, complete sequence 104063-104094 9 0.719
NZ_CP045418_3 3.47|1136227|32|NZ_CP045418|PILER-CR,CRISPRCasFinder,CRT 1136227-1136258 32 NZ_CP020413 Leptospira interrogans serovar Copenhageni strain FDAARGOS_203 plasmid unnamed1, complete sequence 252862-252893 9 0.719
NZ_CP045418_3 3.50|1136407|32|NZ_CP045418|PILER-CR,CRISPRCasFinder,CRT 1136407-1136438 32 NZ_CP054613 Paenibacillus cellulosilyticus strain KACC 14175 plasmid unnamed4, complete sequence 66356-66387 9 0.719
NZ_CP045418_3 3.54|1136587|32|NZ_CP045418|CRISPRCasFinder,CRT,PILER-CR 1136587-1136618 32 MN693530 Marine virus AFVG_25M373, complete genome 8549-8580 9 0.719
NZ_CP045418_3 3.54|1136587|32|NZ_CP045418|CRISPRCasFinder,CRT,PILER-CR 1136587-1136618 32 MN693144 Marine virus AFVG_25M372, complete genome 7979-8010 9 0.719
NZ_CP045418_3 3.6|1133766|32|NZ_CP045418|PILER-CR,CRISPRCasFinder,CRT 1133766-1133797 32 NZ_CP022999 Rhizobium sp. 11515TR strain 10195 plasmid p11515TR-A, complete sequence 136199-136230 10 0.688
NZ_CP045418_3 3.7|1133826|32|NZ_CP045418|PILER-CR,CRISPRCasFinder,CRT 1133826-1133857 32 NZ_LR536452 Methylocella tundrae isolate MTUNDRAET4 annotated genome plasmid 3 80383-80414 10 0.688
NZ_CP045418_3 3.11|1134067|32|NZ_CP045418|PILER-CR,CRISPRCasFinder,CRT 1134067-1134098 32 NZ_CP012399 Chelatococcus sp. CO-6 plasmid pCO-6, complete sequence 450210-450241 10 0.688
NZ_CP045418_3 3.11|1134067|32|NZ_CP045418|PILER-CR,CRISPRCasFinder,CRT 1134067-1134098 32 MN693456 Marine virus AFVG_25M411, complete genome 49603-49634 10 0.688
NZ_CP045418_3 3.12|1134127|32|NZ_CP045418|PILER-CR,CRISPRCasFinder,CRT 1134127-1134158 32 NZ_CP039041 Piscirickettsia salmonis strain Psal-072 plasmid unnamed1, complete sequence 18872-18903 10 0.688
NZ_CP045418_3 3.29|1135147|32|NZ_CP045418|PILER-CR,CRISPRCasFinder,CRT 1135147-1135178 32 KT381865 Pelagibaca phage vB_PeaS-P1, partial genome 3066-3097 10 0.688
NZ_CP045418_3 3.38|1135687|32|NZ_CP045418|PILER-CR,CRISPRCasFinder,CRT 1135687-1135718 32 LN997843 Streptomyces reticuli genome assembly TUE45, plasmid : II 123117-123148 10 0.688
NZ_CP045418_3 3.47|1136227|32|NZ_CP045418|PILER-CR,CRISPRCasFinder,CRT 1136227-1136258 32 NC_022111 Prevotella sp. oral taxon 299 str. F0039 plasmid, complete sequence 1075324-1075355 10 0.688
NZ_CP045418_3 3.56|1136707|32|NZ_CP045418|CRISPRCasFinder,CRT,PILER-CR 1136707-1136738 32 MK967393 Rhodococcus phage Whack, complete genome 40723-40754 10 0.688
NZ_CP045418_3 3.29|1135147|32|NZ_CP045418|PILER-CR,CRISPRCasFinder,CRT 1135147-1135178 32 NZ_CP014308 Burkholderia sp. PAMC 26561 plasmid unnamed1, complete sequence 6812-6843 11 0.656
NZ_CP045418_3 3.29|1135147|32|NZ_CP045418|PILER-CR,CRISPRCasFinder,CRT 1135147-1135178 32 NZ_CP014309 Burkholderia sp. PAMC 26561 plasmid unnamed2, complete sequence 34414-34445 11 0.656
NZ_CP045418_3 3.41|1135867|32|NZ_CP045418|PILER-CR,CRISPRCasFinder,CRT 1135867-1135898 32 NZ_CP014361 Methylomonas sp. DH-1 plasmid, complete sequence 162962-162993 11 0.656
NZ_CP045418_3 3.41|1135867|32|NZ_CP045418|PILER-CR,CRISPRCasFinder,CRT 1135867-1135898 32 NZ_CP023670 Methylomonas koyamae strain LM6 plasmid pLM6, complete sequence 133896-133927 11 0.656

1. spacer 3.31|1135267|32|NZ_CP045418|PILER-CR,CRISPRCasFinder,CRT matches to MH779521 (Lactococcus phage vB_Llc_bIBB94p4, complete genome) position: , mismatch: 4, identity: 0.875

gattatgatggcgtttactttggcgatttgaa	CRISPR spacer
gaagataatggcgtttactttggagatttgaa	Protospacer
**  **.**************** ********

2. spacer 3.14|1134247|32|NZ_CP045418|PILER-CR,CRISPRCasFinder,CRT matches to NC_047702 (Uncultured phage_MedDCM-OCT-S35-C6 DNA, complete genome, group G8, isolate: uvMED-CGR-U-MedDCM-OCT-S35-C6) position: , mismatch: 6, identity: 0.812

ttcaaggtactgataactattttgatggtttg	CRISPR spacer
ataatggaactgataattattttgatggttta	Protospacer
 * * ** ********.**************.

3. spacer 3.31|1135267|32|NZ_CP045418|PILER-CR,CRISPRCasFinder,CRT matches to CP015514 (Vibrio vulnificus strain FORC_036 plasmid unnamed, complete sequence) position: , mismatch: 6, identity: 0.812

gattatgatggcgtttactttggcgatttgaa	CRISPR spacer
aatgttgatggtgattactttggcgatttgga	Protospacer
.**  ******.* ****************.*

4. spacer 3.31|1135267|32|NZ_CP045418|PILER-CR,CRISPRCasFinder,CRT matches to NC_001706 (Lactococcus phage c2, complete genome) position: , mismatch: 6, identity: 0.812

gattatgatggcgtttactttggcgatttgaa	CRISPR spacer
gaagacaacggcgtttactttggagatttgaa	Protospacer
**  *..*.************** ********

5. spacer 3.31|1135267|32|NZ_CP045418|PILER-CR,CRISPRCasFinder,CRT matches to AY570986 (Lactococcus bacteriophage Rc15 pL7 (L7), pL8 (L8), pL9 (L9), pL10 (L10), and pL11 (L11) genes, complete cds) position: , mismatch: 6, identity: 0.812

gattatgatggcgtttactttggcgatttgaa	CRISPR spacer
gaagacaacggcgtttactttggagatttgaa	Protospacer
**  *..*.************** ********

6. spacer 3.31|1135267|32|NZ_CP045418|PILER-CR,CRISPRCasFinder,CRT matches to L48605 (Bacteriophage c2 complete genome) position: , mismatch: 6, identity: 0.812

gattatgatggcgtttactttggcgatttgaa	CRISPR spacer
gaagacaacggcgtttactttggagatttgaa	Protospacer
**  *..*.************** ********

7. spacer 3.10|1134007|32|NZ_CP045418|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP049249 (Rhizobium rhizoryzae strain DSM 29514 plasmid unnamed3, complete sequence) position: , mismatch: 7, identity: 0.781

tctcctaccaaaggcgcttattatgcgatacc	CRISPR spacer
tttcctaccaaaggcatttattatgcggcagg	Protospacer
*.*************..**********..*  

8. spacer 3.11|1134067|32|NZ_CP045418|PILER-CR,CRISPRCasFinder,CRT matches to MN369756 (Gordonia phage Anon, complete genome) position: , mismatch: 7, identity: 0.781

ttcggcagcagcttcgccttcttcggggccac	CRISPR spacer
tccggcggcagcttcgacttcttcggatcccg	Protospacer
*.****.********* *********. **  

9. spacer 3.11|1134067|32|NZ_CP045418|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP025436 (Gordonia sp. YC-JH1 plasmid pGOR1, complete sequence) position: , mismatch: 7, identity: 0.781

ttcggcagcagcttcgccttcttcggggccac	CRISPR spacer
tcccacggcagcttcggcttcttcgggtccgc	Protospacer
*.* .*.********* ********** **.*

10. spacer 3.14|1134247|32|NZ_CP045418|PILER-CR,CRISPRCasFinder,CRT matches to MN698242 (Pelagibacter phage HTVC103P, complete genome) position: , mismatch: 7, identity: 0.781

ttcaaggtactgataactattttgatggtttg	CRISPR spacer
ctgtaggtactgctaattattttgatggttat	Protospacer
.*  ******** ***.*************  

11. spacer 3.19|1134547|32|NZ_CP045418|PILER-CR,CRISPRCasFinder,CRT matches to NC_022368 (Bacillaceae bacterium JMAK1 plasmid pGIAK1, complete sequence) position: , mismatch: 7, identity: 0.781

--gctgataagctcacatcgccattggcgttaat	CRISPR spacer
atcttggta--ctcacatcgcccttagcgttaat	Protospacer
   .**.**  *********** **.********

12. spacer 3.31|1135267|32|NZ_CP045418|PILER-CR,CRISPRCasFinder,CRT matches to MH779519 (Lactococcus phage vB_LLc_bIBB14, complete genome) position: , mismatch: 7, identity: 0.781

gattatgatggcgtttactttggcgatttgaa	CRISPR spacer
gaagacaacggagtttactttggagatttgaa	Protospacer
**  *..*.** *********** ********

13. spacer 3.31|1135267|32|NZ_CP045418|PILER-CR,CRISPRCasFinder,CRT matches to MH779520 (Lactococcus phage vB_Llc_bIBB27, complete genome) position: , mismatch: 7, identity: 0.781

gattatgatggcgtttactttggcgatttgaa	CRISPR spacer
gaagacaacggagtttactttggagatttgaa	Protospacer
**  *..*.** *********** ********

14. spacer 3.31|1135267|32|NZ_CP045418|PILER-CR,CRISPRCasFinder,CRT matches to MH779525 (Lactococcus phage vB_Llc_bIBBE1, complete genome) position: , mismatch: 7, identity: 0.781

gattatgatggcgtttactttggcgatttgaa	CRISPR spacer
gaagacaacggagtttactttggagatttgaa	Protospacer
**  *..*.** *********** ********

15. spacer 3.32|1135327|32|NZ_CP045418|PILER-CR,CRISPRCasFinder,CRT matches to NC_007103 (Bacillus cereus E33L plasmid pE33L466, complete sequence) position: , mismatch: 7, identity: 0.781

--tgatgacgccaactttagctatgacaagactt	CRISPR spacer
actattg--ggcaactatagatatgacaagactt	Protospacer
  *. **  * ***** *** *************

16. spacer 3.32|1135327|32|NZ_CP045418|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP009967 (Bacillus cereus E33L plasmid pBCO_1, complete sequence) position: , mismatch: 7, identity: 0.781

--tgatgacgccaactttagctatgacaagactt	CRISPR spacer
actattg--ggcaactatagatatgacaagactt	Protospacer
  *. **  * ***** *** *************

17. spacer 3.38|1135687|32|NZ_CP045418|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP017076 (Novosphingobium resinovorum strain SA1 plasmid pSA1, complete sequence) position: , mismatch: 7, identity: 0.781

aatggcgaccagagcggcggcaacagcggctt	CRISPR spacer
gaccgcgaccagttcggcggcaacagcggaat	Protospacer
.*. ********  ***************  *

18. spacer 3.38|1135687|32|NZ_CP045418|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP016452 (Sinorhizobium sp. RAC02 plasmid pBSY16_1, complete sequence) position: , mismatch: 7, identity: 0.781

aatggcg----accagagcggcggcaacagcggctt	CRISPR spacer
----gcgctgcaccagaccggccgcaacagcggcgt	Protospacer
    ***    ****** **** *********** *

19. spacer 3.55|1136647|32|NZ_CP045418|CRISPRCasFinder,CRT,PILER-CR matches to NZ_LR214954 (Mycoplasma neurolyticum strain NCTC10166 plasmid 4) position: , mismatch: 7, identity: 0.781

aaaagcaagaggtggtaacccag--actattgaa	CRISPR spacer
aaaaacaagaggtggtaaccaagttacagttt--	Protospacer
****.*************** **  ** .**   

20. spacer 3.11|1134067|32|NZ_CP045418|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP049249 (Rhizobium rhizoryzae strain DSM 29514 plasmid unnamed3, complete sequence) position: , mismatch: 8, identity: 0.75

ttcggcagcagcttcgccttcttcggggccac	CRISPR spacer
gccagcagcgccttcgccttcttcgggtctgc	Protospacer
 .*.*****. **************** *..*

21. spacer 3.11|1134067|32|NZ_CP045418|PILER-CR,CRISPRCasFinder,CRT matches to NZ_KY000047 (Agrobacterium genomosp. 1 strain CFBP2516 plasmid pTi_CFBP2516, complete sequence) position: , mismatch: 8, identity: 0.75

ttcggcagcagcttcgccttcttcggggccac	CRISPR spacer
cgcggaagcaggttcgccttcttcgccgctgc	Protospacer
. *** ***** *************  **..*

22. spacer 3.38|1135687|32|NZ_CP045418|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP022363 (Azospirillum sp. TSH58 plasmid TSH58_p03, complete sequence) position: , mismatch: 8, identity: 0.75

aatggcgaccagagcggcggcaacagcggctt----	CRISPR spacer
gatggcgaccagggcggcggccac----gctcatgg	Protospacer
.***********.******** **    ***.    

23. spacer 3.44|1136047|32|NZ_CP045418|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP010865 (Marinovum algicola DG 898 plasmid pMaD10, complete sequence) position: , mismatch: 8, identity: 0.75

aaaaattctgcatttcgtccaggacaaccagg	CRISPR spacer
catcacgctggatttcgtccaggacaaccatt	Protospacer
 *  *. *** *******************  

24. spacer 3.6|1133766|32|NZ_CP045418|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP014676 (Kozakia baliensis strain DSM 14400 plasmid pKB14400_2, complete sequence) position: , mismatch: 9, identity: 0.719

tctaacctcgacaacattttctacgattgggt	CRISPR spacer
ttgcaccgcgacaacagtttctacgatccctt	Protospacer
*.  *** ******** **********.   *

25. spacer 3.11|1134067|32|NZ_CP045418|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP015096 (Pelagibaca abyssi strain JLT2014 plasmid pPABY8, complete sequence) position: , mismatch: 9, identity: 0.719

ttcggcagcagcttcgccttcttcggggccac	CRISPR spacer
tgcgccagaagcttcgccttcttcgattgtgc	Protospacer
* ** *** ****************.   ..*

26. spacer 3.11|1134067|32|NZ_CP045418|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP024310 (Sinorhizobium fredii strain NXT3 plasmid pSfreNXT3c, complete sequence) position: , mismatch: 9, identity: 0.719

ttcggcagcagcttcgccttcttcggggccac	CRISPR spacer
ctttaaaccagttccgccttcttcggggccaa	Protospacer
.*. . * ***.*.***************** 

27. spacer 3.11|1134067|32|NZ_CP045418|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP023064 (Sinorhizobium sp. CCBAU 05631 plasmid pSS05631b, complete sequence) position: , mismatch: 9, identity: 0.719

ttcggcagcagcttcgccttcttcggggccac	CRISPR spacer
ctttaaaccagttccgccttcttcggggccaa	Protospacer
.*. . * ***.*.***************** 

28. spacer 3.11|1134067|32|NZ_CP045418|PILER-CR,CRISPRCasFinder,CRT matches to MH744420 (Streptomyces phage Kromp, complete genome) position: , mismatch: 9, identity: 0.719

ttcggcagcagcttcgccttcttcggggccac	CRISPR spacer
ggacgcagccgcttcgtcttcttcgggtcgcc	Protospacer
    ***** ******.********** *  *

29. spacer 3.14|1134247|32|NZ_CP045418|PILER-CR,CRISPRCasFinder,CRT matches to MN693953 (Marine virus AFVG_250M577, complete genome) position: , mismatch: 9, identity: 0.719

ttcaaggtactgataactattttgatggtttg	CRISPR spacer
atactggttctgataattattttgatggacta	Protospacer
 *   *** *******.*********** .*.

30. spacer 3.36|1135567|32|NZ_CP045418|PILER-CR,CRISPRCasFinder,CRT matches to NC_011409 (Haemophilus influenzae plasmid ICEhin1056, complete sequence) position: , mismatch: 9, identity: 0.719

aactgcgaagtaagcagataagaaaacagcct	CRISPR spacer
atctgcgaaaaaagcagataagaaatatactg	Protospacer
* *******. **************   .*. 

31. spacer 3.38|1135687|32|NZ_CP045418|PILER-CR,CRISPRCasFinder,CRT matches to CP011998 (Ralstonia solanacearum strain YC45 plasmid, complete sequence) position: , mismatch: 9, identity: 0.719

aatggcgaccagagcggcggcaacagcggctt	CRISPR spacer
cgcgccggccagcgcggcggcaacagcgccgg	Protospacer
 ..* **.**** *************** *  

32. spacer 3.43|1135987|32|NZ_CP045418|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP015322 (Mesorhizobium amorphae CCNWGS0123 plasmid pM0123d, complete sequence) position: , mismatch: 9, identity: 0.719

----tttttcgtaggctcgaaatagttttccgtttt	CRISPR spacer
aaaactt----taggcttgaaatagttttcggttcg	Protospacer
    .**    ******.************ ***. 

33. spacer 3.44|1136047|32|NZ_CP045418|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP023068 (Ensifer sojae CCBAU 05684 plasmid pSJ05684b, complete sequence) position: , mismatch: 9, identity: 0.719

aaaaattctgcatttcgtccaggacaaccagg	CRISPR spacer
catcgtgctggatttcgtccaagacaaccatt	Protospacer
 *  .* *** **********.********  

34. spacer 3.44|1136047|32|NZ_CP045418|PILER-CR,CRISPRCasFinder,CRT matches to NC_009958 (Dinoroseobacter shibae DFL 12 = DSM 16493 plasmid pDSHI04, complete sequence) position: , mismatch: 9, identity: 0.719

aaaaattctgcatttcgtccaggacaaccagg	CRISPR spacer
catcacgctggatttcgtgcaggacaaccatt	Protospacer
 *  *. *** ******* ***********  

35. spacer 3.47|1136227|32|NZ_CP045418|PILER-CR,CRISPRCasFinder,CRT matches to CP053919 (Serratia marcescens strain LY1 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.719

tgggcaagcaattttaatattcgccgcttcca	CRISPR spacer
cgcatcagcaattttaatttttgccgctttta	Protospacer
.* .. ************ **.*******..*

36. spacer 3.47|1136227|32|NZ_CP045418|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP020413 (Leptospira interrogans serovar Copenhageni strain FDAARGOS_203 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.719

tgggcaagcaattttaatattcgccgcttcca	CRISPR spacer
tcaagaagcaattttaaaattcgccactggaa	Protospacer
* .. ************ *******.**   *

37. spacer 3.50|1136407|32|NZ_CP045418|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP054613 (Paenibacillus cellulosilyticus strain KACC 14175 plasmid unnamed4, complete sequence) position: , mismatch: 9, identity: 0.719

gtacgcgcacaaccaaggtgatacgcctaagt	CRISPR spacer
gaaacaagtcaaccaaggtgaaacgcctatgt	Protospacer
* *   .  ************ ******* **

38. spacer 3.54|1136587|32|NZ_CP045418|CRISPRCasFinder,CRT,PILER-CR matches to MN693530 (Marine virus AFVG_25M373, complete genome) position: , mismatch: 9, identity: 0.719

ttggacgcaatgagtgcaacaccgagcaccag	CRISPR spacer
attgacgctatgagtgcaacaacgagagcatt	Protospacer
 * ***** ************ **** .*   

39. spacer 3.54|1136587|32|NZ_CP045418|CRISPRCasFinder,CRT,PILER-CR matches to MN693144 (Marine virus AFVG_25M372, complete genome) position: , mismatch: 9, identity: 0.719

ttggacgcaatgagtgcaacaccgagcaccag	CRISPR spacer
attgacgctatgagtgcaacaacgagagcatt	Protospacer
 * ***** ************ **** .*   

40. spacer 3.6|1133766|32|NZ_CP045418|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP022999 (Rhizobium sp. 11515TR strain 10195 plasmid p11515TR-A, complete sequence) position: , mismatch: 10, identity: 0.688

tctaacctcgacaacattttctacgattgggt	CRISPR spacer
gatggcctcgacagcattttcgacgatttccg	Protospacer
  *..********.******* ******    

41. spacer 3.7|1133826|32|NZ_CP045418|PILER-CR,CRISPRCasFinder,CRT matches to NZ_LR536452 (Methylocella tundrae isolate MTUNDRAET4 annotated genome plasmid 3) position: , mismatch: 10, identity: 0.688

tcaacagcggctttatcggcgagaggctcaca	CRISPR spacer
ggcgcagcggcttgatcggcgaggggcagatg	Protospacer
   .********* *********.***  *..

42. spacer 3.11|1134067|32|NZ_CP045418|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP012399 (Chelatococcus sp. CO-6 plasmid pCO-6, complete sequence) position: , mismatch: 10, identity: 0.688

ttcggcagcagcttcgccttcttcggggccac	CRISPR spacer
gcaagcagccgcttcgccttctccgggtcata	Protospacer
 . .***** ************.**** *   

43. spacer 3.11|1134067|32|NZ_CP045418|PILER-CR,CRISPRCasFinder,CRT matches to MN693456 (Marine virus AFVG_25M411, complete genome) position: , mismatch: 10, identity: 0.688

ttcggcagcagcttcgccttcttcggggccac	CRISPR spacer
ctcggcagcagcttcagcttcttcccagtttt	Protospacer
.**************. *******  .*.. .

44. spacer 3.12|1134127|32|NZ_CP045418|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP039041 (Piscirickettsia salmonis strain Psal-072 plasmid unnamed1, complete sequence) position: , mismatch: 10, identity: 0.688

taaatcagccgtgcggaaatgaatgcggcgaa	CRISPR spacer
cagctcagccttgctgaaatgaatgcgctatt	Protospacer
.*. ****** *** ************ ..  

45. spacer 3.29|1135147|32|NZ_CP045418|PILER-CR,CRISPRCasFinder,CRT matches to KT381865 (Pelagibaca phage vB_PeaS-P1, partial genome) position: , mismatch: 10, identity: 0.688

aactggcgcgggggcgctcttttctgcaaacg	CRISPR spacer
gtttggcccggcggcgctcttttctgagggct	Protospacer
. .**** *** ************** ...* 

46. spacer 3.38|1135687|32|NZ_CP045418|PILER-CR,CRISPRCasFinder,CRT matches to LN997843 (Streptomyces reticuli genome assembly TUE45, plasmid : II) position: , mismatch: 10, identity: 0.688

aatggcgaccagagcggcggcaacagcggctt	CRISPR spacer
gtcctcagccagcgcggcggcaacggcggcta	Protospacer
. .  *..**** ***********.****** 

47. spacer 3.47|1136227|32|NZ_CP045418|PILER-CR,CRISPRCasFinder,CRT matches to NC_022111 (Prevotella sp. oral taxon 299 str. F0039 plasmid, complete sequence) position: , mismatch: 10, identity: 0.688

tgggcaagcaattttaatattcgccgcttcca	CRISPR spacer
gttgcaagcatttttaataatcgccgagtagc	Protospacer
   ******* ******** ******  *   

48. spacer 3.56|1136707|32|NZ_CP045418|CRISPRCasFinder,CRT,PILER-CR matches to MK967393 (Rhodococcus phage Whack, complete genome) position: , mismatch: 10, identity: 0.688

atacattgcagggttgtaagtctcgacaatat	CRISPR spacer
tgaaggtgcagggttataagtctcggcaaata	Protospacer
  * . *********.*********.***   

49. spacer 3.29|1135147|32|NZ_CP045418|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP014308 (Burkholderia sp. PAMC 26561 plasmid unnamed1, complete sequence) position: , mismatch: 11, identity: 0.656

aactggcgcgggggcgctcttttctgcaaacg	CRISPR spacer
gttcatcgcggcggcgctctttcctgcaacgc	Protospacer
. ... ***** **********.******   

50. spacer 3.29|1135147|32|NZ_CP045418|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP014309 (Burkholderia sp. PAMC 26561 plasmid unnamed2, complete sequence) position: , mismatch: 11, identity: 0.656

aactggcgcgggggcgctcttttctgcaaacg	CRISPR spacer
gttcatcgcggcggcgctctttcctgcaacgc	Protospacer
. ... ***** **********.******   

51. spacer 3.41|1135867|32|NZ_CP045418|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP014361 (Methylomonas sp. DH-1 plasmid, complete sequence) position: , mismatch: 11, identity: 0.656

tttttaaaggaggtataaaccgccctggatat	CRISPR spacer
gttttaatgggggtataaaccgcctcaccggc	Protospacer
 ****** **.*************...   ..

52. spacer 3.41|1135867|32|NZ_CP045418|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP023670 (Methylomonas koyamae strain LM6 plasmid pLM6, complete sequence) position: , mismatch: 11, identity: 0.656

tttttaaaggaggtataaaccgccctggatat	CRISPR spacer
gttttaatgggggtataaaccgcctcaccggc	Protospacer
 ****** **.*************...   ..

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 865267 : 873819 7 Streptomyces_phage(16.67%) NA NA
DBSCAN-SWA_2 1280982 : 1307023 28 Vibrio_phage(30.0%) terminase,portal,capsid NA
DBSCAN-SWA_3 1617742 : 1626683 15 Pseudoalteromonas_phage(100.0%) capsid NA
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Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
NZ_CP045418.1|WP_152440736.1|1617742_1618021_-|hypothetical-protein 1617742_1618021_- 92 aa aa NA NA NA 1617742-1626683 yes
2. NZ_CP045419
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP045419_1 659597-659676 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_CP045419_1 1.1|659621|32|NZ_CP045419|CRISPRCasFinder 659621-659652 32 NZ_CP045419 Pseudoalteromonas sp. THAF3 plasmid pTHAF3_a, complete sequence 659621-659652 0 1.0

1. spacer 1.1|659621|32|NZ_CP045419|CRISPRCasFinder matches to NZ_CP045419 (Pseudoalteromonas sp. THAF3 plasmid pTHAF3_a, complete sequence) position: , mismatch: 0, identity: 1.0

cttaaatctctcccttgaatcaaggggtctga	CRISPR spacer
cttaaatctctcccttgaatcaaggggtctga	Protospacer
********************************

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage