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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP045287 Curtobacterium flaccumfaciens pv. flaccumfaciens strain P990 chromosome, complete genome 7 crisprs csa3,WYL,DinG,cas3,DEDDh 1 5 1 0
NZ_CP045288 Curtobacterium flaccumfaciens pv. flaccumfaciens strain P990 plasmid pCff1, complete sequence 0 crisprs NA 0 0 0 0
NZ_CP045290 Curtobacterium flaccumfaciens pv. flaccumfaciens strain P990 plasmid pCff3, complete sequence 0 crisprs NA 0 0 0 0
NZ_CP045289 Curtobacterium flaccumfaciens pv. flaccumfaciens strain P990 plasmid pCff2, complete sequence 0 crisprs NA 0 0 0 0

Results visualization

1. NZ_CP045287
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP045287_1 116168-116281 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP045287_2 488401-488495 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP045287_3 1233565-1233666 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP045287_4 1370062-1370189 Orphan NA
2 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP045287_5 2630817-2630914 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP045287_6 2737801-2737929 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP045287_7 3409292-3409433 Orphan NA
2 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
NZ_CP045287_2 2.1|488436|25|NZ_CP045287|CRISPRCasFinder 488436-488460 25 NZ_CP045287.2 488478-488502 0 1.0

1. spacer 2.1|488436|25|NZ_CP045287|CRISPRCasFinder matches to position: 488478-488502, mismatch: 0, identity: 1.0

gccgtactgctgcgacggctgctgg	CRISPR spacer
gccgtactgctgcgacggctgctgg	Protospacer
*************************

CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_CP045287_2 2.1|488436|25|NZ_CP045287|CRISPRCasFinder 488436-488460 25 NC_013855 Azospirillum sp. B510 plasmid pAB510a, complete sequence 1184513-1184537 3 0.88
NZ_CP045287_4 4.1|1370089|29|NZ_CP045287|PILER-CR 1370089-1370117 29 NZ_CP041349 Komagataeibacter xylinus strain CGMCC 17276 plasmid pA, complete sequence 199823-199851 6 0.793
NZ_CP045287_4 4.1|1370089|29|NZ_CP045287|PILER-CR 1370089-1370117 29 NZ_CP013104 Paraburkholderia caribensis strain MWAP64 plasmid 1, complete sequence 1431024-1431052 6 0.793
NZ_CP045287_4 4.1|1370089|29|NZ_CP045287|PILER-CR 1370089-1370117 29 NZ_CP012748 Paraburkholderia caribensis MBA4 plasmid unnamed, complete sequence 2157842-2157870 6 0.793
NZ_CP045287_7 7.2|3409378|31|NZ_CP045287|CRISPRCasFinder 3409378-3409408 31 NZ_CP044989 Deinococcus sp. AJ005 plasmid p380k, complete sequence 185001-185031 7 0.774
NZ_CP045287_7 7.2|3409378|31|NZ_CP045287|CRISPRCasFinder 3409378-3409408 31 NC_021086 Cutibacterium acnes HL096PA1 plasmid unnamed, complete sequence 14539-14569 7 0.774
NZ_CP045287_7 7.2|3409378|31|NZ_CP045287|CRISPRCasFinder 3409378-3409408 31 NZ_CP012356 Cutibacterium acnes strain PA_15_1_R1 plasmid unnamed, complete sequence 14392-14422 7 0.774
NZ_CP045287_1 1.1|116209|32|NZ_CP045287|CRISPRCasFinder 116209-116240 32 FJ937737 Burkholderia cenocepacia phage BcepIL02, complete genome 57584-57615 9 0.719
NZ_CP045287_1 1.1|116209|32|NZ_CP045287|CRISPRCasFinder 116209-116240 32 NC_012743 Burkholderia phage BcepIL02, complete genome 57584-57615 9 0.719
NZ_CP045287_7 7.2|3409378|31|NZ_CP045287|CRISPRCasFinder 3409378-3409408 31 NZ_CP021406 Celeribacter manganoxidans strain DY25 plasmid pDY25-B, complete sequence 49973-50003 9 0.71
NZ_CP045287_7 7.2|3409378|31|NZ_CP045287|CRISPRCasFinder 3409378-3409408 31 CP000662 Rhodobacter sphaeroides ATCC 17025 plasmid pRSPA01, complete sequence 245653-245683 9 0.71
NZ_CP045287_1 1.1|116209|32|NZ_CP045287|CRISPRCasFinder 116209-116240 32 NC_007949 Polaromonas sp. JS666 plasmid 1, complete sequence 67827-67858 10 0.688
NZ_CP045287_7 7.1|3409317|36|NZ_CP045287|CRISPRCasFinder 3409317-3409352 36 NZ_CP047184 Rathayibacter sp. VKM Ac-2801 plasmid unnamed, complete sequence 47826-47861 10 0.722
NZ_CP045287_1 1.1|116209|32|NZ_CP045287|CRISPRCasFinder 116209-116240 32 NZ_CP051517 Paraburkholderia aromaticivorans strain AR20-38 plasmid unnamed1 64683-64714 11 0.656

1. spacer 2.1|488436|25|NZ_CP045287|CRISPRCasFinder matches to NC_013855 (Azospirillum sp. B510 plasmid pAB510a, complete sequence) position: , mismatch: 3, identity: 0.88

gccgtactgctgcgacggctgctgg	CRISPR spacer
gccgtgctgctgcgacggctgacgg	Protospacer
*****.*************** .**

2. spacer 4.1|1370089|29|NZ_CP045287|PILER-CR matches to NZ_CP041349 (Komagataeibacter xylinus strain CGMCC 17276 plasmid pA, complete sequence) position: , mismatch: 6, identity: 0.793

ccgaccccgtcttctggccgacccggcgg	CRISPR spacer
gctggcccgccttctggccgaccgggcgg	Protospacer
 * . ****.************* *****

3. spacer 4.1|1370089|29|NZ_CP045287|PILER-CR matches to NZ_CP013104 (Paraburkholderia caribensis strain MWAP64 plasmid 1, complete sequence) position: , mismatch: 6, identity: 0.793

ccgaccccgtcttctggccgacccggcgg	CRISPR spacer
cgcgccccgtcttctggccgaaccagccg	Protospacer
*  .***************** **.** *

4. spacer 4.1|1370089|29|NZ_CP045287|PILER-CR matches to NZ_CP012748 (Paraburkholderia caribensis MBA4 plasmid unnamed, complete sequence) position: , mismatch: 6, identity: 0.793

ccgaccccgtcttctggccgacccggcgg	CRISPR spacer
cgcgccccgtcttctggccgaaccagccg	Protospacer
*  .***************** **.** *

5. spacer 7.2|3409378|31|NZ_CP045287|CRISPRCasFinder matches to NZ_CP044989 (Deinococcus sp. AJ005 plasmid p380k, complete sequence) position: , mismatch: 7, identity: 0.774

ggcacgaccgacacccgccgcaccacgcggc	CRISPR spacer
accatgaccgacacccgccgcaccttcctgc	Protospacer
. **.******************* . * **

6. spacer 7.2|3409378|31|NZ_CP045287|CRISPRCasFinder matches to NC_021086 (Cutibacterium acnes HL096PA1 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.774

ggcacg-accgacacccgccgcaccacgcggc	CRISPR spacer
-acacacaccgacacccgccgcgcctcgcgtg	Protospacer
 .***. ***************.** ****  

7. spacer 7.2|3409378|31|NZ_CP045287|CRISPRCasFinder matches to NZ_CP012356 (Cutibacterium acnes strain PA_15_1_R1 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.774

ggcacg-accgacacccgccgcaccacgcggc	CRISPR spacer
-acacacaccgacacccgccgcgcctcgcgtg	Protospacer
 .***. ***************.** ****  

8. spacer 1.1|116209|32|NZ_CP045287|CRISPRCasFinder matches to FJ937737 (Burkholderia cenocepacia phage BcepIL02, complete genome) position: , mismatch: 9, identity: 0.719

atgcgcgcgcaacagttgcgcgcgcgtccgag	CRISPR spacer
gcgcgctcgcaacacttgcgcgcgccgcgtcg	Protospacer
..**** ******* **********  *   *

9. spacer 1.1|116209|32|NZ_CP045287|CRISPRCasFinder matches to NC_012743 (Burkholderia phage BcepIL02, complete genome) position: , mismatch: 9, identity: 0.719

atgcgcgcgcaacagttgcgcgcgcgtccgag	CRISPR spacer
gcgcgctcgcaacacttgcgcgcgccgcgtcg	Protospacer
..**** ******* **********  *   *

10. spacer 7.2|3409378|31|NZ_CP045287|CRISPRCasFinder matches to NZ_CP021406 (Celeribacter manganoxidans strain DY25 plasmid pDY25-B, complete sequence) position: , mismatch: 9, identity: 0.71

ggcacgaccgacacccgccgcaccacgcggc	CRISPR spacer
atcaccaccgacacccgccgcgccagatacc	Protospacer
. *** ***************.*** ... *

11. spacer 7.2|3409378|31|NZ_CP045287|CRISPRCasFinder matches to CP000662 (Rhodobacter sphaeroides ATCC 17025 plasmid pRSPA01, complete sequence) position: , mismatch: 9, identity: 0.71

ggcacgaccgacacccgccgcaccacgcggc	CRISPR spacer
tcgaaatccgacaccagccgcgccacgcggt	Protospacer
   * . ******** *****.********.

12. spacer 1.1|116209|32|NZ_CP045287|CRISPRCasFinder matches to NC_007949 (Polaromonas sp. JS666 plasmid 1, complete sequence) position: , mismatch: 10, identity: 0.688

atgcgcgcgcaacagttgcgcgcgcgtccgag	CRISPR spacer
ctgcgcgcgcaacaagtgcgcgcggaacaagc	Protospacer
 *************. ******** . * .. 

13. spacer 7.1|3409317|36|NZ_CP045287|CRISPRCasFinder matches to NZ_CP047184 (Rathayibacter sp. VKM Ac-2801 plasmid unnamed, complete sequence) position: , mismatch: 10, identity: 0.722

atcgacgggttcggccacgcccccacgctaggaacg	CRISPR spacer
ttcgacgggtccggccacgccgccacgatccccgcc	Protospacer
 *********.********** ***** *    .* 

14. spacer 1.1|116209|32|NZ_CP045287|CRISPRCasFinder matches to NZ_CP051517 (Paraburkholderia aromaticivorans strain AR20-38 plasmid unnamed1) position: , mismatch: 11, identity: 0.656

atgcgcgcgcaacagttgcgcgcgcgtccgag	CRISPR spacer
gctcgcgcgcaacagttgcacgcacgctacgc	Protospacer
.. ****************.***.**..  . 

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 796485 : 807377 11 Enterococcus_phage(16.67%) NA NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage