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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP042270 Bacillus thuringiensis strain GA-A07 chromosome, complete genome 7 crisprs csa3,DEDDh,cas3,WYL,DinG,Cas14u_CAS-V 0 3 5 0

Results visualization

1. NZ_CP042270
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP042270_1 984585-984718 Orphan NA
2 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP042270_2 3677642-3677934 Orphan NA
2 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP042270_3 4374198-4374315 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP042270_4 4374396-4375044 Orphan NA
11 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP042270_6 4375341-4375412 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP042270_5 4375116-4375227 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP042270_7 4502467-4502577 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_CP042270_4 4.5|4374675|27|NZ_CP042270|CRISPRCasFinder 4374675-4374701 27 MT820023 Cryophage ML09, complete genome 23677-23703 7 0.741
NZ_CP042270_1 1.1|984608|31|NZ_CP042270|CRISPRCasFinder 984608-984638 31 JX238501 Bacillus phage phiAGATE, complete genome 124559-124589 8 0.742
NZ_CP042270_1 1.2|984662|34|NZ_CP042270|CRISPRCasFinder 984662-984695 34 MN812210 Flavobacterium phage vB_FspS_hemulen9-1, complete genome 22854-22887 9 0.735
NZ_CP042270_1 1.2|984662|34|NZ_CP042270|CRISPRCasFinder 984662-984695 34 MN812215 Flavobacterium phage vB_FspS_lillamy9-4, complete genome 22191-22224 9 0.735
NZ_CP042270_1 1.2|984662|34|NZ_CP042270|CRISPRCasFinder 984662-984695 34 MN812216 Flavobacterium phage vB_FspS_lillamy9-5, complete genome 22191-22224 9 0.735
NZ_CP042270_1 1.2|984662|34|NZ_CP042270|CRISPRCasFinder 984662-984695 34 NC_048835 Flavobacterium phage vB_FspS_lillamy9-1, complete genome 22191-22224 9 0.735
NZ_CP042270_1 1.2|984662|34|NZ_CP042270|CRISPRCasFinder 984662-984695 34 MN812213 Flavobacterium phage vB_FspS_lillamy9-2, complete genome 22191-22224 9 0.735
NZ_CP042270_1 1.2|984662|34|NZ_CP042270|CRISPRCasFinder 984662-984695 34 MN812230 Flavobacterium phage vB_FspS_sniff9-2, complete genome 21831-21864 9 0.735
NZ_CP042270_1 1.2|984662|34|NZ_CP042270|CRISPRCasFinder 984662-984695 34 MN812209 Flavobacterium phage vB_FspS_hemulen6-2, complete genome 22983-23016 9 0.735
NZ_CP042270_1 1.2|984662|34|NZ_CP042270|CRISPRCasFinder 984662-984695 34 MN812218 Flavobacterium phage vB_FspS_lillamy9-7, complete genome 21454-21487 9 0.735
NZ_CP042270_1 1.2|984662|34|NZ_CP042270|CRISPRCasFinder 984662-984695 34 MN812233 Flavobacterium phage vB_FspS_snork9-1, complete genome 22007-22040 9 0.735
NZ_CP042270_1 1.2|984662|34|NZ_CP042270|CRISPRCasFinder 984662-984695 34 MN812219 Flavobacterium phage vB_FspS_morran9-1, complete genome 22308-22341 9 0.735
NZ_CP042270_1 1.2|984662|34|NZ_CP042270|CRISPRCasFinder 984662-984695 34 MN812217 Flavobacterium phage vB_FspS_lillamy9-6, complete genome 21930-21963 9 0.735
NZ_CP042270_1 1.2|984662|34|NZ_CP042270|CRISPRCasFinder 984662-984695 34 NC_048840 Flavobacterium phage vB_FspS_snork6-1, complete genome 22137-22170 9 0.735
NZ_CP042270_1 1.2|984662|34|NZ_CP042270|CRISPRCasFinder 984662-984695 34 NC_048839 Flavobacterium phage vB_FspS_sniff9-1, complete genome 22057-22090 9 0.735
NZ_CP042270_1 1.2|984662|34|NZ_CP042270|CRISPRCasFinder 984662-984695 34 NC_048842 Flavobacterium phage vB_FspS_stinky9-1, complete genome 21673-21706 9 0.735
NZ_CP042270_1 1.2|984662|34|NZ_CP042270|CRISPRCasFinder 984662-984695 34 MN812232 Flavobacterium phage vB_FspS_snork6-2, complete genome 21655-21688 9 0.735
NZ_CP042270_1 1.2|984662|34|NZ_CP042270|CRISPRCasFinder 984662-984695 34 MN812208 Flavobacterium phage vB_FspS_hemulen6-1, complete genome 22983-23016 9 0.735
NZ_CP042270_1 1.2|984662|34|NZ_CP042270|CRISPRCasFinder 984662-984695 34 NZ_HG813246 Staphylococcus epidermidis PM221 plasmid 1, complete sequence 47181-47214 11 0.676
NZ_CP042270_1 1.2|984662|34|NZ_CP042270|CRISPRCasFinder 984662-984695 34 NZ_HG813246 Staphylococcus epidermidis PM221 plasmid 1, complete sequence 47565-47598 11 0.676
NZ_CP042270_1 1.2|984662|34|NZ_CP042270|CRISPRCasFinder 984662-984695 34 NZ_HG813246 Staphylococcus epidermidis PM221 plasmid 1, complete sequence 47949-47982 11 0.676
NZ_CP042270_1 1.2|984662|34|NZ_CP042270|CRISPRCasFinder 984662-984695 34 NZ_HG813246 Staphylococcus epidermidis PM221 plasmid 1, complete sequence 48333-48366 11 0.676
NZ_CP042270_1 1.2|984662|34|NZ_CP042270|CRISPRCasFinder 984662-984695 34 NZ_HG813246 Staphylococcus epidermidis PM221 plasmid 1, complete sequence 48717-48750 11 0.676
NZ_CP042270_1 1.2|984662|34|NZ_CP042270|CRISPRCasFinder 984662-984695 34 NZ_HG813246 Staphylococcus epidermidis PM221 plasmid 1, complete sequence 49101-49134 11 0.676
NZ_CP042270_1 1.2|984662|34|NZ_CP042270|CRISPRCasFinder 984662-984695 34 NZ_HG813246 Staphylococcus epidermidis PM221 plasmid 1, complete sequence 49485-49518 11 0.676

1. spacer 4.5|4374675|27|NZ_CP042270|CRISPRCasFinder matches to MT820023 (Cryophage ML09, complete genome) position: , mismatch: 7, identity: 0.741

gcctatacttccttgtggtccctgaat	CRISPR spacer
gcctgtacttccttgtggtcctacggg	Protospacer
****.****************.  .. 

2. spacer 1.1|984608|31|NZ_CP042270|CRISPRCasFinder matches to JX238501 (Bacillus phage phiAGATE, complete genome) position: , mismatch: 8, identity: 0.742

ttcttcttttttgtcactagttgaaccgctt	CRISPR spacer
ctaaccttttttgccactagttaaaccgccc	Protospacer
.*  .********.********.******..

3. spacer 1.2|984662|34|NZ_CP042270|CRISPRCasFinder matches to MN812210 (Flavobacterium phage vB_FspS_hemulen9-1, complete genome) position: , mismatch: 9, identity: 0.735

cttgtcttctgttttactttctggtttcgtgctc	CRISPR spacer
ttcggcttctgttttattttctggttgcgatatt	Protospacer
.*.* ***********.********* **   *.

4. spacer 1.2|984662|34|NZ_CP042270|CRISPRCasFinder matches to MN812215 (Flavobacterium phage vB_FspS_lillamy9-4, complete genome) position: , mismatch: 9, identity: 0.735

cttgtcttctgttttactttctggtttcgtgctc	CRISPR spacer
ttcggcttctgttttattttctggttgcgatatt	Protospacer
.*.* ***********.********* **   *.

5. spacer 1.2|984662|34|NZ_CP042270|CRISPRCasFinder matches to MN812216 (Flavobacterium phage vB_FspS_lillamy9-5, complete genome) position: , mismatch: 9, identity: 0.735

cttgtcttctgttttactttctggtttcgtgctc	CRISPR spacer
ttcggcttctgttttattttctggttgcgatatt	Protospacer
.*.* ***********.********* **   *.

6. spacer 1.2|984662|34|NZ_CP042270|CRISPRCasFinder matches to NC_048835 (Flavobacterium phage vB_FspS_lillamy9-1, complete genome) position: , mismatch: 9, identity: 0.735

cttgtcttctgttttactttctggtttcgtgctc	CRISPR spacer
ttcggcttctgttttattttctggttgcgatatt	Protospacer
.*.* ***********.********* **   *.

7. spacer 1.2|984662|34|NZ_CP042270|CRISPRCasFinder matches to MN812213 (Flavobacterium phage vB_FspS_lillamy9-2, complete genome) position: , mismatch: 9, identity: 0.735

cttgtcttctgttttactttctggtttcgtgctc	CRISPR spacer
ttcggcttctgttttattttctggttgcgatatt	Protospacer
.*.* ***********.********* **   *.

8. spacer 1.2|984662|34|NZ_CP042270|CRISPRCasFinder matches to MN812230 (Flavobacterium phage vB_FspS_sniff9-2, complete genome) position: , mismatch: 9, identity: 0.735

cttgtcttctgttttactttctggtttcgtgctc	CRISPR spacer
ttcggcttctgttttattttctggttgcgatatt	Protospacer
.*.* ***********.********* **   *.

9. spacer 1.2|984662|34|NZ_CP042270|CRISPRCasFinder matches to MN812209 (Flavobacterium phage vB_FspS_hemulen6-2, complete genome) position: , mismatch: 9, identity: 0.735

cttgtcttctgttttactttctggtttcgtgctc	CRISPR spacer
ttcggcttctgttttattttctggttgcgatatt	Protospacer
.*.* ***********.********* **   *.

10. spacer 1.2|984662|34|NZ_CP042270|CRISPRCasFinder matches to MN812218 (Flavobacterium phage vB_FspS_lillamy9-7, complete genome) position: , mismatch: 9, identity: 0.735

cttgtcttctgttttactttctggtttcgtgctc	CRISPR spacer
ttcggcttctgttttattttctggttgcgatatt	Protospacer
.*.* ***********.********* **   *.

11. spacer 1.2|984662|34|NZ_CP042270|CRISPRCasFinder matches to MN812233 (Flavobacterium phage vB_FspS_snork9-1, complete genome) position: , mismatch: 9, identity: 0.735

cttgtcttctgttttactttctggtttcgtgctc	CRISPR spacer
ttcggcttctgttttattttctggttgcgatatt	Protospacer
.*.* ***********.********* **   *.

12. spacer 1.2|984662|34|NZ_CP042270|CRISPRCasFinder matches to MN812219 (Flavobacterium phage vB_FspS_morran9-1, complete genome) position: , mismatch: 9, identity: 0.735

cttgtcttctgttttactttctggtttcgtgctc	CRISPR spacer
ttcggcttctgttttattttctggttgcgatatt	Protospacer
.*.* ***********.********* **   *.

13. spacer 1.2|984662|34|NZ_CP042270|CRISPRCasFinder matches to MN812217 (Flavobacterium phage vB_FspS_lillamy9-6, complete genome) position: , mismatch: 9, identity: 0.735

cttgtcttctgttttactttctggtttcgtgctc	CRISPR spacer
ttcggcttctgttttattttctggttgcgatatt	Protospacer
.*.* ***********.********* **   *.

14. spacer 1.2|984662|34|NZ_CP042270|CRISPRCasFinder matches to NC_048840 (Flavobacterium phage vB_FspS_snork6-1, complete genome) position: , mismatch: 9, identity: 0.735

cttgtcttctgttttactttctggtttcgtgctc	CRISPR spacer
ttcggcttctgttttattttctggttgcgatatt	Protospacer
.*.* ***********.********* **   *.

15. spacer 1.2|984662|34|NZ_CP042270|CRISPRCasFinder matches to NC_048839 (Flavobacterium phage vB_FspS_sniff9-1, complete genome) position: , mismatch: 9, identity: 0.735

cttgtcttctgttttactttctggtttcgtgctc	CRISPR spacer
ttcggcttctgttttattttctggttgcgatatt	Protospacer
.*.* ***********.********* **   *.

16. spacer 1.2|984662|34|NZ_CP042270|CRISPRCasFinder matches to NC_048842 (Flavobacterium phage vB_FspS_stinky9-1, complete genome) position: , mismatch: 9, identity: 0.735

cttgtcttctgttttactttctggtttcgtgctc	CRISPR spacer
ttcggcttctgttttattttctggttgcgatatt	Protospacer
.*.* ***********.********* **   *.

17. spacer 1.2|984662|34|NZ_CP042270|CRISPRCasFinder matches to MN812232 (Flavobacterium phage vB_FspS_snork6-2, complete genome) position: , mismatch: 9, identity: 0.735

cttgtcttctgttttactttctggtttcgtgctc	CRISPR spacer
ttcggcttctgttttattttctggttgcgatatt	Protospacer
.*.* ***********.********* **   *.

18. spacer 1.2|984662|34|NZ_CP042270|CRISPRCasFinder matches to MN812208 (Flavobacterium phage vB_FspS_hemulen6-1, complete genome) position: , mismatch: 9, identity: 0.735

cttgtcttctgttttactttctggtttcgtgctc	CRISPR spacer
ttcggcttctgttttattttctggttgcgatatt	Protospacer
.*.* ***********.********* **   *.

19. spacer 1.2|984662|34|NZ_CP042270|CRISPRCasFinder matches to NZ_HG813246 (Staphylococcus epidermidis PM221 plasmid 1, complete sequence) position: , mismatch: 11, identity: 0.676

cttgtcttctgttttactttctggtttcgtgctc	CRISPR spacer
tatgtcttctgtttttgtttctggttccccagct	Protospacer
. *************  *********.* .. ..

20. spacer 1.2|984662|34|NZ_CP042270|CRISPRCasFinder matches to NZ_HG813246 (Staphylococcus epidermidis PM221 plasmid 1, complete sequence) position: , mismatch: 11, identity: 0.676

cttgtcttctgttttactttctggtttcgtgctc	CRISPR spacer
tatgtcttctgtttttgtttctggttccccagct	Protospacer
. *************  *********.* .. ..

21. spacer 1.2|984662|34|NZ_CP042270|CRISPRCasFinder matches to NZ_HG813246 (Staphylococcus epidermidis PM221 plasmid 1, complete sequence) position: , mismatch: 11, identity: 0.676

cttgtcttctgttttactttctggtttcgtgctc	CRISPR spacer
tatgtcttctgtttttgtttctggttccccagct	Protospacer
. *************  *********.* .. ..

22. spacer 1.2|984662|34|NZ_CP042270|CRISPRCasFinder matches to NZ_HG813246 (Staphylococcus epidermidis PM221 plasmid 1, complete sequence) position: , mismatch: 11, identity: 0.676

cttgtcttctgttttactttctggtttcgtgctc	CRISPR spacer
tatgtcttctgtttttgtttctggttccccagct	Protospacer
. *************  *********.* .. ..

23. spacer 1.2|984662|34|NZ_CP042270|CRISPRCasFinder matches to NZ_HG813246 (Staphylococcus epidermidis PM221 plasmid 1, complete sequence) position: , mismatch: 11, identity: 0.676

cttgtcttctgttttactttctggtttcgtgctc	CRISPR spacer
tatgtcttctgtttttgtttctggttccccagct	Protospacer
. *************  *********.* .. ..

24. spacer 1.2|984662|34|NZ_CP042270|CRISPRCasFinder matches to NZ_HG813246 (Staphylococcus epidermidis PM221 plasmid 1, complete sequence) position: , mismatch: 11, identity: 0.676

cttgtcttctgttttactttctggtttcgtgctc	CRISPR spacer
tatgtcttctgtttttgtttctggttccccagct	Protospacer
. *************  *********.* .. ..

25. spacer 1.2|984662|34|NZ_CP042270|CRISPRCasFinder matches to NZ_HG813246 (Staphylococcus epidermidis PM221 plasmid 1, complete sequence) position: , mismatch: 11, identity: 0.676

cttgtcttctgttttactttctggtttcgtgctc	CRISPR spacer
tatgtcttctgtttttgtttctggttccccagct	Protospacer
. *************  *********.* .. ..

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 293205 : 300891 9 Staphylococcus_phage(16.67%) NA NA
DBSCAN-SWA_2 682257 : 724862 52 Prochlorococcus_phage(12.5%) protease,transposase,coat NA
DBSCAN-SWA_3 1461643 : 1469592 6 uncultured_virus(33.33%) NA NA
DBSCAN-SWA_4 1515111 : 1523487 8 Synechococcus_phage(50.0%) NA NA
DBSCAN-SWA_5 3015229 : 3023907 8 Bacillus_phage(66.67%) NA NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage