CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_AP021844	Azospira sp. I09	0 crisprs	DEDDh,DinG,WYL,RT,csa3	0	0	3	0
NZ_AP021845	Azospira sp. I09 plasmid pAZI09, complete sequence	4 crisprs	PD-DExK,DinG,csf5gr6,csf1gr8,csf2gr7,csf3gr5	0	7	2	0

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1397060 : 1410067

Prochlorococcus_phage(20.0%)

tRNA

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_014237029.1\|1397060_1398977_-\|tRNA	threonine--tRNA ligase	A0A2K9L297	Tupanvirus	3.5e-129	37.8
WP_152089517.1\|1399289_1399733_-	rhodanese-like domain-containing protein	NA	NA	NA	NA
WP_014237027.1\|1399729_1400527_-	3'-5' exonuclease	NA	NA	NA	NA
WP_152089518.1\|1400532_1401432_-	cysteine synthase CysM	A0A1X9I5F1	Streptococcus_phage	2.3e-54	40.7
WP_152089519.1\|1401435_1402428_-	ADP-glyceromanno-heptose 6-epimerase	R9S880	Prochlorococcus_phage	1.8e-31	33.0
WP_152089520.1\|1402437_1403385_-	D-glycero-beta-D-manno-heptose-7-phosphate kinase	R9S8D5	Prochlorococcus_phage	1.5e-11	25.5
WP_152089521.1\|1403396_1403945_-	dTDP-4-dehydrorhamnose 3,5-epimerase	A0A291LA62	Escherichia_phage	8.8e-49	52.9
WP_152089522.1\|1403941_1404832_-	glucose-1-phosphate thymidylyltransferase RfbA	I7I009	Enterobacteria_phage	1.3e-97	59.6
WP_152089523.1\|1404821_1405751_-	dTDP-4-dehydrorhamnose reductase	A0A291LA50	Escherichia_phage	1.6e-21	33.1
WP_152089524.1\|1405737_1406799_-	dTDP-glucose 4,6-dehydratase	I7HTA3	Enterobacteria_phage	9.2e-87	49.0
WP_152089525.1\|1406809_1408135_-	nucleotide sugar dehydrogenase	A0A127AXI2	Bacillus_phage	1.5e-78	38.5
WP_172974712.1\|1408187_1409357_-	lipopolysaccharide assembly protein LapB	NA	NA	NA	NA
WP_152089526.1\|1409353_1409680_-	DUF1049 domain-containing protein	NA	NA	NA	NA
WP_014237016.1\|1409764_1410067_-	integration host factor subunit beta	Q2A099	Sodalis_phage	1.2e-10	42.2

DBSCAN-SWA_2

2569244 : 2576915

Synechococcus_phage(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_152090171.1\|2569244_2569748_-	peptide deformylase	E3SLL2	Synechococcus_phage	9.0e-16	42.9
WP_014235926.1\|2569865_2570921_+	LysM peptidoglycan-binding domain-containing protein	G3MBQ1	Bacillus_virus	4.1e-10	42.9
WP_152090172.1\|2570930_2572049_+	DNA-protecting protein DprA	S6BFL3	Thermus_phage	5.6e-26	34.7
WP_152090173.1\|2572059_2572548_+	DUF494 family protein	NA	NA	NA	NA
WP_152090174.1\|2572737_2575323_+	DNA topoisomerase III	J3E777	Acanthamoeba_polyphaga_lentillevirus	6.5e-17	24.9
WP_014235930.1\|2575412_2575889_-	DNA starvation/stationary phase protection protein	W5S6G8	Pithovirus	5.0e-16	36.9
WP_152090175.1\|2576003_2576915_-	LysR family transcriptional regulator	A0A2P0ZL89	Lactobacillus_phage	9.9e-13	24.1

DBSCAN-SWA_3

2967016 : 3023959

Bacillus_phage(28.57%)

protease,transposase,integrase

attL 2991252:2991270|attR 3028742:3028760

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_152090375.1\|2967016_2967958_-\|transposase	IS1595 family transposase	NA	NA	NA	NA
WP_014235630.1\|2968030_2968231_-	hypothetical protein	NA	NA	NA	NA
WP_152090376.1\|2968362_2969466_-	hypothetical protein	NA	NA	NA	NA
WP_152090377.1\|2969562_2971437_+	diguanylate cyclase	NA	NA	NA	NA
WP_014235627.1\|2971516_2971993_-	VOC family protein	NA	NA	NA	NA
WP_130459820.1\|2972310_2972787_-	nitrate reductase cytochrome c-type subunit	NA	NA	NA	NA
WP_152090378.1\|2972797_2973718_-	quinol dehydrogenase ferredoxin subunit NapH	NA	NA	NA	NA
WP_152090379.1\|2973714_2974695_-	ferredoxin-type protein NapG	NA	NA	NA	NA
WP_152090380.1\|2974784_2977310_-	nitrate reductase catalytic subunit NapA	NA	NA	NA	NA
WP_014235622.1\|2977311_2977560_-	chaperone NapD	NA	NA	NA	NA
WP_152090381.1\|2977861_2980063_+	EAL domain-containing protein	A0A127AWB9	Bacillus_phage	4.1e-12	34.2
WP_152090382.1\|2980114_2980948_-	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	A0A2I7SAX1	Vibrio_phage	2.2e-43	38.4
WP_152090383.1\|2981004_2981910_-	bestrophin	NA	NA	NA	NA
WP_152090384.1\|2981906_2982758_-	TatD family hydrolase	NA	NA	NA	NA
WP_014235617.1\|2982804_2983596_-	enoyl-CoA hydratase	NA	NA	NA	NA
WP_152090899.1\|2983630_2984890_-	D-amino acid dehydrogenase	NA	NA	NA	NA
WP_130459828.1\|2984886_2987118_-	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	A0A291L9W9	Bordetella_phage	2.5e-09	31.3
WP_014235614.1\|2987149_2987356_-	DNA-directed RNA polymerase subunit omega	NA	NA	NA	NA
WP_130459829.1\|2987383_2987992_-	guanylate kinase	A0A218KC48	Bacillus_phage	3.1e-18	35.4
WP_152090385.1\|2988008_2988875_-	YicC family protein	NA	NA	NA	NA
WP_152090386.1\|2989012_2989978_+	protein kinase	A0A285PX80	Cedratvirus	5.4e-09	24.4
WP_014235610.1\|2989974_2990886_+	serine/threonine-protein phosphatase	NA	NA	NA	NA
WP_130459832.1\|2990895_2991612_+	ribonuclease PH	NA	NA	NA	NA
2991252:2991270	attL	NA	NA	NA	NA
WP_152090387.1\|2991625_2992534_+	hypothetical protein	NA	NA	NA	NA
WP_014235607.1\|2992539_2993130_+	RdgB/HAM1 family non-canonical purine NTP pyrophosphatase	NA	NA	NA	NA
WP_152090388.1\|2993274_2994510_+	oxygen-independent coproporphyrinogen III oxidase-like protein	NA	NA	NA	NA
WP_152090900.1\|2994600_2996535_-	TonB-dependent receptor	NA	NA	NA	NA
WP_014236230.1\|2996760_2997930_+\|integrase	integrase	A0A1L7DQ84	Ralstonia_phage	5.5e-48	39.6
WP_133247329.1\|2998098_2998500_+	hypothetical protein	NA	NA	NA	NA
WP_014236231.1\|2998560_2999811_+	TolC family protein	NA	NA	NA	NA
WP_014236232.1\|2999807_3001040_+	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA
WP_014236233.1\|3001050_3004209_+	CusA/CzcA family heavy metal efflux RND transporter	NA	NA	NA	NA
WP_050804349.1\|3004244_3004949_+	HupE/UreJ family protein	NA	NA	NA	NA
WP_014236235.1\|3004962_3005604_+	hypothetical protein	NA	NA	NA	NA
WP_043797801.1\|3005674_3005941_+	hypothetical protein	NA	NA	NA	NA
WP_014236237.1\|3005988_3007326_+	MFS transporter	NA	NA	NA	NA
WP_083834012.1\|3007672_3008155_+	flagellar basal body rod protein FlgB	NA	NA	NA	NA
WP_014236239.1\|3008250_3009189_+	chromate resistance protein	NA	NA	NA	NA
WP_014236240.1\|3009185_3010550_+	chromate efflux transporter	A0A219VHC2	Ochrobactrum_phage	2.3e-29	59.8
WP_014236241.1\|3010546_3010942_+	hypothetical protein	NA	NA	NA	NA
WP_014236242.1\|3010938_3011394_+	chromate resistance protein	NA	NA	NA	NA
WP_014236243.1\|3011390_3012602_+	MFS transporter	NA	NA	NA	NA
WP_014236244.1\|3012699_3013314_-	hypothetical protein	NA	NA	NA	NA
WP_043797805.1\|3013422_3013785_-	hypothetical protein	NA	NA	NA	NA
WP_043797807.1\|3013866_3014295_-	hypothetical protein	NA	NA	NA	NA
WP_014236245.1\|3014523_3015012_-	hypothetical protein	NA	NA	NA	NA
WP_014236246.1\|3015008_3016919_-\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_014236247.1\|3016915_3018586_-\|integrase	site-specific integrase	NA	NA	NA	NA
WP_014236248.1\|3018585_3019710_-\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_152090389.1\|3020022_3020832_-	nickel transporter	NA	NA	NA	NA
WP_152090390.1\|3021026_3022400_-	PAS domain-containing protein	NA	NA	NA	NA
WP_014236251.1\|3022410_3022899_-	nickel-responsive transcriptional regulator NikR	NA	NA	NA	NA
WP_014236252.1\|3023077_3023959_-\|protease	protease HtpX	NA	NA	NA	NA
3028742:3028760	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_AP021845

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CRISPR-Cas detection and classification

Crispr_ID: NZ_AP021845_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_AP021845_1

11331-11433

TypeIV-A

Consensus_repeat	Method
GTTGGAGGCACCGCTCAGATGAGGGGTGGTTACAGG	CRISPRCasFinder

1 spacers

csf3gr5,csf2gr7,csf1gr8,csf5gr6,DinG,PD-DExK

The CRISPR arrays of NZ_AP021845_1

>merge|NZ_AP021845|1|11331-11433|CRISPRCasFinder
GCAGGATATACCCCTCATTCGATGGGTGGTTACAGGATCTCAACCCGCTCTAGGATTCGGCTGACTGCTGGATGCACCCCAGATTTGCGGGGTGGTTACAGGT

>NZ_AP021845|1|1|11331-11433|CRISPRCasFinder
GCAGGATATACCCCTCATTCGATGGGTGGTTACAGG	ATCTCAACCCGCTCTAGGATTCGGCTGACT
GCTGGATGCACCCCAGATTTGCGGGGTGGTTACAGGT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_AP021845.1\|WP_004883034.1\|2592_3792_-\|tyrosine-type-recombinase/integrase	unknown	unknown	gnl\|CDD\|271177
NZ_AP021845.1\|WP_152090940.1\|12610_12820_-\|hypothetical-protein	unknown	unknown	unknown
NZ_AP021845.1\|WP_152090942.1\|13293_13818_-\|hypothetical-protein	unknown	unknown	unknown
NZ_AP021845.1\|WP_152090947.1\|15850_16288_-\|hypothetical-protein	unknown	unknown	unknown
NZ_AP021845.1\|WP_152090949.1\|16868_17072_-\|hypothetical-protein	unknown	unknown	unknown
NZ_AP021845.1\|WP_152090941.1\|12821_13283_-\|hypothetical-protein	unknown	unknown	unknown
NZ_AP021845.1\|WP_152090939.1\|10540_11263_+\|hypothetical-protein	csf3gr5	cd09707_csf3gr5_CAS-IV-A	gnl\|CDD\|187838
NZ_AP021845.1\|WP_004883035.1\|1528_2596_-\|DUF1016-family-protein	PD-DExK	COG4804_PD-DExK_CAS-I:CAS-III	gnl\|CDD\|227141
NZ_AP021845.1\|WP_152090935.1\|5373_7878_-\|DEAD/DEAH-box-helicase-family-protein	DinG	cd09708_DinG_CAS-IV-A	gnl\|CDD\|187839
NZ_AP021845.1\|WP_172974821.1\|8071_8692_+\|hypothetical-protein	csf5gr6	mkCas0159_csf5gr6_CAS-IV-A	unknown
NZ_AP021845.1\|WP_152090946.1\|15606_15834_-\|hypothetical-protein	unknown	unknown	unknown
NZ_AP021845.1\|WP_152090934.1\|4030_5377_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|224037
NZ_AP021845.1\|WP_152090943.1\|14138_14459_-\|hypothetical-protein	unknown	unknown	unknown
NZ_AP021845.1\|WP_152090938.1\|9447_10539_+\|type-IV-CRISPR-associated-protein-Csf2	csf2gr7	cd09706_csf2gr7_CAS-IV-A	gnl\|CDD\|274435
NZ_AP021845.1\|WP_152090948.1\|16290_16860_-\|hypothetical-protein	unknown	unknown	unknown
NZ_AP021845.1\|WP_152090945.1\|15091_15607_-\|hypothetical-protein	unknown	unknown	unknown
NZ_AP021845.1\|WP_152090944.1\|14759_15089_-\|hypothetical-protein	unknown	unknown	unknown
NZ_AP021845.1\|WP_004883036.1\|41_1289_+\|hypothetical-protein	unknown	unknown	unknown
NZ_AP021845.1\|WP_152090937.1\|8688_9438_+\|hypothetical-protein	csf1gr8	cd09705_csf1gr8_CAS-IV-A	gnl\|CDD\|187836

Protein	Function_ID	Function_description	E-value
NZ_AP021845.1\|WP_152090935.1\|5373_7878_-\|DEAD/DEAH-box-helicase-family-protein	gnl\|CDD\|187839	cd09708, Csf4_U, CRISPR/Cas system-associated DinG family helicase Csf4. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; DinG family DNA helicase.	2.5316e-100
NZ_AP021845.1\|WP_004883034.1\|2592_3792_-\|tyrosine-type-recombinase/integrase	gnl\|CDD\|271177	cd00796, INT_Rci_Hp1_C, Shufflon-specific DNA recombinase Rci and Bacteriophage Hp1_like integrase, C-terminal catalytic domain. Rci protein is a tyrosine recombinase specifically involved in Shufflon type of DNA rearrangement in bacteria. The shufflon of plasmid R64 consists of four invertible DNA segments which are separated and flanked by seven 19-bp repeat sequences. RCI recombinase facilitates the site-specific recombination between any inverted repeats results in an inversion of the DNA segment(s) either independently or in groups. HP1 integrase promotes site-specific recombination of the HP1 genome into that of Haemophilus influenza. Bacteriophage Hp1_like integrases are tyrosine based site specific recombinases. They belong to the superfamily of DNA breaking-rejoining enzymes, which share the same fold in their catalytic domain and the overall reaction mechanism. The catalytic domain contains six conserved active site residues. Their overall reaction mechanism is essentially identical and involves cleavage of a single strand of a DNA duplex by nucleophilic attack of a conserved tyrosine to give a 3' phosphotyrosyl protein-DNA adduct. In the second rejoining step, a terminal 5' hydroxyl attacks the covalent adduct to release the enzyme and generate duplex DNA.	8.38812e-24
NZ_AP021845.1\|WP_152090934.1\|4030_5377_+\|hypothetical-protein	gnl\|CDD\|224037	COG1112, COG1112, Superfamily I DNA and RNA helicases and helicase subunits [DNA replication, recombination, and repair].	9.4518e-34
NZ_AP021845.1\|WP_152090939.1\|10540_11263_+\|hypothetical-protein	gnl\|CDD\|187838	cd09707, Csf3_U, CRISPR/Cas system-associated RAMP superfamily protein Csf3. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; RAMP superfamily protein.	4.71563e-40
NZ_AP021845.1\|WP_152090938.1\|9447_10539_+\|type-IV-CRISPR-associated-protein-Csf2	gnl\|CDD\|274435	TIGR03115, cas7_csf2, CRISPR type IV/AFERR-associated protein Csf2. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf2 (CRISPR/cas Subtype as in A. ferrooxidans protein 2), as it lies second closest to the repeats.	1.13098e-53
NZ_AP021845.1\|WP_152090937.1\|8688_9438_+\|hypothetical-protein	gnl\|CDD\|187836	cd09705, Csf1_U, CRISPR/Cas system-associated protein Csf1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Zn-finger domain containing protein; also known as Csf1 family.	1.66856e-36
NZ_AP021845.1\|WP_004883035.1\|1528_2596_-\|DUF1016-family-protein	gnl\|CDD\|227141	COG4804, COG4804, Predicted nuclease of restriction endonuclease-like fold [General function prediction only].	1.97931e-67

>NZ_AP021845.1|WP_152090939.1|10540_11263_+|hypothetical-protein
MTPLKITFQVSGGFVPPPYPLHLDALLAYAQTFDALGDVADEPGIPQLRALADDMPIQRFEKDGDWCYMASAVQPEGPVLNDARFYTQRMNQDDYSARVGREHIQHGRHKPGSPMERYQIQLETARGVHRNLLGFYPVQQSATSSGALLTLVGWCIAEKWWVEDRLLNGRITHIGARRRSGHGKIQSIAIEEDNLAMSQWRLRVRPWKLLDDDLEIRAAWKPPYWAPENRGTAFCSSQLI
>NZ_AP021845.1|WP_152090938.1|9447_10539_+|type-IV-CRISPR-associated-protein-Csf2
MNSIQIQLNLTSPLYIAYPDNVDKTANVSRTTKLRLMNNGRLYDLPIYPANGFRGGLRRAAAARVVEALSAKEGPVPGDLYLGLTCGASSASPDQTPKTVEEIIRGRGNVYMGLFGGGARLLSSMYRVSDMLPVLQATIETGAVPDYLAELVMPKFQKEGEPAKHAGPWEVMSERTSIRVDDLYRVMRPEEIKAYVKNPLETVAAHQDGVLANKEGRKTDGDTKTDVSNMMGIETVAPGVPFYFCIDLDKDVTPGQVGMLLLSLRDLFQENAFGGWTRCGFGKVRVNQIKIAYDDQDLAWSDFYGTSHFELPDAANVYTSQAQEEIGSLTTAEMASFFEDFSAGKKAEAKAKAKAKKTAPAEA
>NZ_AP021845.1|WP_152090937.1|8688_9438_+|hypothetical-protein
MRQITASHLTIQAAGIKAIGAVLAGPDHVGQRCAVCGADINPGDPIDKLDLPRTFTNQSSLAIPNGKWRCGACNAIMGNSEFQMGASTILVCSEGVFPIVRKEHRAWAFLTPPKPPFVIAIQNAKQQHVIWRAPVSLSKDLIMVRLGEQIFRLRRQKLLNCVEIAKRIDAARITPGRPVKDAIENPFVNDWKFQSAEGGRLKSWVWKLQAEQKIAPEDFMELTTLNGGEAWALTAFLSATITKPDPLNF
>NZ_AP021845.1|WP_172974821.1|8071_8692_+|hypothetical-protein
MLAKAADGRAILPPQFFHYGEDGKPLSTGEAEIRTIGSKNWVGVLSKTGNAELFDPCVGIATRVAANHYGSPAKMEVMELEYGLEAAAMPVFYNLSRAAFKRRSAKRRALSTEEIIKEYLLRQLNDEAERFGFDLPPDSALKIQVHHAKEMGMRLNLNTGLSNEYVSLVDANFSMYLELHGMWQIGNLQARGHGLIYRAKPGGVWS
>NZ_AP021845.1|WP_152090935.1|5373_7878_-|DEAD/DEAH-box-helicase-family-protein
MPTLNVPKSACSLLHAGFHPNDVSDEIRLFIRGAIQGLICQAIDDGIPPAELPAAAETGIPMNISFTKGHDRAIRNLSKEKKIREGDAALSYLYAAIARGDAIERRKSVSESPLHPYVAALGLTDRQHQNVFGEALIETLSGKSIGMVEGATGIGKTLGMVAAAAHVLEGRSFGRSLIAVPTLTLLRQFARQHQALADAIPEFPSARFILGKNEFVSVGELRILLDSGTFSEYSSTILGWLGQNGPSPSSDQAIDHRFLISSLIAIAPQFPVDAVRCGNLTDDGDPGMASYRAQFEVDESERLECEIIYCTHAMLAADIRRRMFGARSSEEGLEIRQRHRTIRQEAMGLRAALDDAGNEAYRDAGMDIKNSIDGELFELAAQAVALDAGILPSWQYLLIDEAHLFESNLANTFAFNLSLGRLLQHINAAQAEGAVSAAAAKRASKAMTIIRHAGENNDDINLKSTSPQARDVCAALNELLSIVTGVKPSKTSPTITTLKGQASVIRTALRLATTSVLGRSMLCYSPIRAFPQLSVGRASVSSELAFLWHSCEAGACVSATLYLRRLDKDSASYMAGILNIPTNRMREYPVIRPHWVTAPVAGLWIPESTKNPSGRLWLRPPTRSDKLDTEQYRLREEEWLEDLSAEIRKIQVSAAGGTLVLMTSYTSAKGLAERLADIDGLVVAEQGVSISRQVEGFVNQHSAGKKPLWIAVGGAWTGVDINGKDYGLATPGEDNLLTDLVIPRFPFGTNMSMTHRHRAEQASNVPWDLLDAAMRFKQGLGRLVRREGLPPNRRIYVLDGRMNEPTFDFFMSHLRRIIGIYPVKTLKRSAAIDD
>NZ_AP021845.1|WP_152090934.1|4030_5377_+|hypothetical-protein
MGKSHQQWREDLRKVMHELQALEDDEASLKGERRTSEEDLGKLKSRIDGLRRHLDDLAAAGCTAEEKLRKAKDRLAGYWPDLAADDHDQERSSPWAHPEWRAARIRVFLAALNLHQAFIEENASKMMANLGIAMDMLQGGIPDPKVRVQALDSLAIACPVISTTFASVPSLCGSMSSEGIGWLLIDEAGQATPQAAAGAIWRARRVVVVGDPLQLEPVVTLPRSVEASLAACNGGVNSRLHPSRTSVQKLADQTTAIGTTVGEGDDAIWVGAPLRVHRRCDEPMFSISNEVAYDGLMVHHKKPAALTWPASYWLDVPGGQGNGNWIPAEGEALRGLIQNLLGQAQVPADDIFLISPFRDVVRELKGMGKAFGLDYRRVGTVHTTQGKEADVVIMVLGGGTAGARDWASSRPNLLNVAASRAKARFYVVGDRKDWSKRRFFDVLSKNLS
>NZ_AP021845.1|WP_004883034.1|2592_3792_-|tyrosine-type-recombinase/integrase
MAKIKLTKSAVDAAQPQAEAVELRDTLVPGFLCKITPAGRKVFMLQYRTNAGERRKPSLGLYGELTVEQARSLAQEWLAQVRRGGDPAAEKAEARQAPTVKELCTKFMEDYSKKRNKLSTQAGYQAVINRNIIPLLGRKKVQDVKRPEIAGLMEKLSYKQTEANKVFSVLRKMFNMAEVWGYRPDGTNPCRHVPMFPAGKSTHLISDEEMGNLFRQLDKIESEGLENYVIPLGIRLQFEFAGRRSEIIALEWNWVDLQNRRVVWPDSKTGGMSKPMSEEAYRLLSTAPRQEGSRYVLPSPSHAGKHLTTGEYYGGWSRALKAAGATHVGTHGIRHRSATDIANSGIPVKVGMALTAHKTVVMFMRYVHTEDKPVREAAELVANRRKTITGMQGAKEVAA
>NZ_AP021845.1|WP_004883035.1|1528_2596_-|DUF1016-family-protein
MTRRKASVSAPAAPPALLGDIRALIEASRQRVASAVNAELTLLFWRIGQRIHTEVLAGQRAGYGDEILPTLAAQLVRDYGRSFADKNLRRMVQFAATFSDEPIVVTLSRQLSWSHFVALLPLKDPLQRDYYVQMASAERWSVRTLRERIDSMLYERTALSKKPDETITQELAAMRDAQRMSPALVMRDPYILDFLGLRDTWQEGDLEAAIIREMESFLLELGAGFSFLARQKRIQIDDEDFHLDLLFYNRKLRRLVAVELKIGEFKAAYKGQMELYLRWLDKHEREPEEASPLGIILCTGKKSEQIELLELDKSGIHVAEYLTTLPPRAVLGERLQQATERARLQIEQRQPGEKS
>NZ_AP021845.1|WP_004883036.1|41_1289_+|hypothetical-protein
MKNIFEEINEFSSEKIALFSFGKFCYVFLNKDPIFVKKLLPLIQTSLANESFQADVMRAYTEGCMNEKAAILKEFEAKRDHPNAAKFYGPQLDLVDKRLAIKTIQHLMDYLNNYLNEYPGSLEILNNSYKHIHDEDGVSYIKENYANYRIGCIFYSKHQSIMGRAEMLELKYSKVVEREYEKIGIDIRKEDAQFSKYSLVSLNENIQIFNDKDSQTIRDERIGRHFWIKVPRKLLTSIEELIEKGMLSEIAFRIDYVSDYVPAMEEMEFGAPLRLKISSLPRLSKFYSTDKYENNLWIHHDAEKLSLTFEELMEDFEVAGDDVVTQVIHLEYSSKGDDFFITHLDHEFIVYTLDSYQERLSNANIKGHRKIKTFKIDNSMIPFDINISGDLFLFQVLDSYLKNDDLIREYFEKIN
>NZ_AP021845.1|WP_152090940.1|12610_12820_-|hypothetical-protein
MSSLPKIDHQENAERNLGIAIDRLDEMRWAVVGVDSPDAECLAKFDEGVAKLKEALTVIRHSPSKTTGR
>NZ_AP021845.1|WP_152090941.1|12821_13283_-|hypothetical-protein
MNKADLIWWPDNKKGVIINAVAARDRATARFVVTRAIRLVFPMPIMVLASYLISTTLTFPDDAPGWVLTWVEWGPTTLAWACATMTLVVVAMLLIDWRRDRSAAVALACEASALGVDIAKLDGDWVFEALVLPMVRRKGITLPDGSVAHLTEE
>NZ_AP021845.1|WP_152090942.1|13293_13818_-|hypothetical-protein
MTLASCIGCGCDDLHACVDDLGPCSWIVVDRDAGRGVCSCCESHMERWNAGDRSVLMLVAKITRDGETEPYFIEKNGIGSFPYFLEVEAGDKFSIEWVEMSQEQFEALPQFEHVRLAEKWLEEITAAGDAESEGKMDEAGTHRAEAQRLSEKVAERGFDVLDLIEADELPASLL
>NZ_AP021845.1|WP_152090943.1|14138_14459_-|hypothetical-protein
MKIDPHEVTSRSIAVVSEVPLIATQWHRHGDHPRVHGMNGSNWELFPDEDDVRYGLLSGGHSGCLLVESGDWIVWNEVFKTYAIFKPDQFEALFSTSAAAIAPSER
>NZ_AP021845.1|WP_152090944.1|14759_15089_-|hypothetical-protein
MTPNWQPIEALPLIAGMLDDQLHSLHTQVGNLEQCRHRPWVLDGETVNRLQAVFGEQMDSLPVFREQLARWLELPLDEHQRQEINRLNAVLDQMKAAIERILSLAGNIR
>NZ_AP021845.1|WP_152090945.1|15091_15607_-|hypothetical-protein
MEEYSRPATLDDLKALIASLNEQCADYLLIGGYALFAHGYHRATTDIDVLVPATQEAGIKIRSALMVLPDQAAKNIDPAWFDEGENIRVADAFIVDIMLNACGETYETLKKYAETLDVDGVPVRTINLEGLLLTKQTMREKDVSDRIILERALETLKERVSKPESDHGLGL
>NZ_AP021845.1|WP_152090946.1|15606_15834_-|hypothetical-protein
MRTIGRRKEHPITFSASAELLVEGARFNDEIHRLPTGNTTHIPKGLYRFKSFEEANQHQQDCLVAGMAKIALERK
>NZ_AP021845.1|WP_152090947.1|15850_16288_-|hypothetical-protein
MEYRDFLKEIPEGLGATEKTLQLWFVIYQWILEHGYADSADSPAFLQHINAFRKCSTQTVATHLRRMSDAKLIKRYVLRRKLSGEAKEELSIGSLLFAPGAESIPTTFVRYCLPGQQCPTEFKSYEAAVSALDGRMNAIRETVRP
>NZ_AP021845.1|WP_152090948.1|16290_16860_-|hypothetical-protein
MNTLETQNASTVIDMATAVRERASIKVYANGNLVGEISIAEHEAFKLAAKNDRSLYREQALNYLEATFRLVGRIVLSIPENWFVIAVLLALMMPSEFNSLVSAIIANPSTSSTEFLNTVRWALAASIASTALVAVISGESFGLANVFDDRVAMMIRAKFKLPPMCKLFVDAEQILDGLPSHQAPTHFGK
>NZ_AP021845.1|WP_152090949.1|16868_17072_-|hypothetical-protein
MAEFTILVGDEVVRLTKKEVEALRKSLKTDVLVTPEDWTRSELQSRSQARKKLMDALYSAEKDIILR

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Crispr_ID: NZ_AP021845_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_AP021845_2

11530-11698

TypeIV-A

Consensus_repeat	Method
GTTGGAGGCACCGCTCAGATGAGGGGTGGTTACAGG	CRISPRCasFinder

2 spacers

csf3gr5,csf2gr7,csf1gr8,csf5gr6,DinG,PD-DExK

The CRISPR arrays of NZ_AP021845_2

>merge|NZ_AP021845|2|11530-11698|CRISPRCasFinder
GCTGAATGCACCCCTAATCCTGGGGGTGGTTACAGGCTGATATTGACAAGGCCTTGGCAGTTGTCGGCTGGATGTACCCCACATCTGAGGGGTGGTTACAGGGTCAGGAGTATCAGCCAGACAATGAACTTGGCTGGATGCACCCCACATCTGAGGGGTGGTTGCAGGG

>NZ_AP021845|2|2|11530-11698|CRISPRCasFinder
GCTGAATGCACCCCTAATCCTGGGGGTGGTTACAGG	CTGATATTGACAAGGCCTTGGCAGTTGTCG
GCTGGATGTACCCCACATCTGAGGGGTGGTTACAGG	GTCAGGAGTATCAGCCAGACAATGAACTTG
GCTGGATGCACCCCACATCTGAGGGGTGGTTGCAGGG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_AP021845.1\|WP_004883034.1\|2592_3792_-\|tyrosine-type-recombinase/integrase	unknown	unknown	gnl\|CDD\|271177
NZ_AP021845.1\|WP_152090940.1\|12610_12820_-\|hypothetical-protein	unknown	unknown	unknown
NZ_AP021845.1\|WP_152090942.1\|13293_13818_-\|hypothetical-protein	unknown	unknown	unknown
NZ_AP021845.1\|WP_152090947.1\|15850_16288_-\|hypothetical-protein	unknown	unknown	unknown
NZ_AP021845.1\|WP_152090949.1\|16868_17072_-\|hypothetical-protein	unknown	unknown	unknown
NZ_AP021845.1\|WP_152090941.1\|12821_13283_-\|hypothetical-protein	unknown	unknown	unknown
NZ_AP021845.1\|WP_152090939.1\|10540_11263_+\|hypothetical-protein	csf3gr5	cd09707_csf3gr5_CAS-IV-A	gnl\|CDD\|187838
NZ_AP021845.1\|WP_004883035.1\|1528_2596_-\|DUF1016-family-protein	PD-DExK	COG4804_PD-DExK_CAS-I:CAS-III	gnl\|CDD\|227141
NZ_AP021845.1\|WP_152090935.1\|5373_7878_-\|DEAD/DEAH-box-helicase-family-protein	DinG	cd09708_DinG_CAS-IV-A	gnl\|CDD\|187839
NZ_AP021845.1\|WP_172974821.1\|8071_8692_+\|hypothetical-protein	csf5gr6	mkCas0159_csf5gr6_CAS-IV-A	unknown
NZ_AP021845.1\|WP_152090946.1\|15606_15834_-\|hypothetical-protein	unknown	unknown	unknown
NZ_AP021845.1\|WP_152090934.1\|4030_5377_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|224037
NZ_AP021845.1\|WP_152090943.1\|14138_14459_-\|hypothetical-protein	unknown	unknown	unknown
NZ_AP021845.1\|WP_152090938.1\|9447_10539_+\|type-IV-CRISPR-associated-protein-Csf2	csf2gr7	cd09706_csf2gr7_CAS-IV-A	gnl\|CDD\|274435
NZ_AP021845.1\|WP_152090948.1\|16290_16860_-\|hypothetical-protein	unknown	unknown	unknown
NZ_AP021845.1\|WP_152090945.1\|15091_15607_-\|hypothetical-protein	unknown	unknown	unknown
NZ_AP021845.1\|WP_152090944.1\|14759_15089_-\|hypothetical-protein	unknown	unknown	unknown
NZ_AP021845.1\|WP_004883036.1\|41_1289_+\|hypothetical-protein	unknown	unknown	unknown
NZ_AP021845.1\|WP_152090937.1\|8688_9438_+\|hypothetical-protein	csf1gr8	cd09705_csf1gr8_CAS-IV-A	gnl\|CDD\|187836

Protein	Function_ID	Function_description	E-value
NZ_AP021845.1\|WP_152090935.1\|5373_7878_-\|DEAD/DEAH-box-helicase-family-protein	gnl\|CDD\|187839	cd09708, Csf4_U, CRISPR/Cas system-associated DinG family helicase Csf4. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; DinG family DNA helicase.	2.5316e-100
NZ_AP021845.1\|WP_004883034.1\|2592_3792_-\|tyrosine-type-recombinase/integrase	gnl\|CDD\|271177	cd00796, INT_Rci_Hp1_C, Shufflon-specific DNA recombinase Rci and Bacteriophage Hp1_like integrase, C-terminal catalytic domain. Rci protein is a tyrosine recombinase specifically involved in Shufflon type of DNA rearrangement in bacteria. The shufflon of plasmid R64 consists of four invertible DNA segments which are separated and flanked by seven 19-bp repeat sequences. RCI recombinase facilitates the site-specific recombination between any inverted repeats results in an inversion of the DNA segment(s) either independently or in groups. HP1 integrase promotes site-specific recombination of the HP1 genome into that of Haemophilus influenza. Bacteriophage Hp1_like integrases are tyrosine based site specific recombinases. They belong to the superfamily of DNA breaking-rejoining enzymes, which share the same fold in their catalytic domain and the overall reaction mechanism. The catalytic domain contains six conserved active site residues. Their overall reaction mechanism is essentially identical and involves cleavage of a single strand of a DNA duplex by nucleophilic attack of a conserved tyrosine to give a 3' phosphotyrosyl protein-DNA adduct. In the second rejoining step, a terminal 5' hydroxyl attacks the covalent adduct to release the enzyme and generate duplex DNA.	8.38812e-24
NZ_AP021845.1\|WP_152090934.1\|4030_5377_+\|hypothetical-protein	gnl\|CDD\|224037	COG1112, COG1112, Superfamily I DNA and RNA helicases and helicase subunits [DNA replication, recombination, and repair].	9.4518e-34
NZ_AP021845.1\|WP_152090939.1\|10540_11263_+\|hypothetical-protein	gnl\|CDD\|187838	cd09707, Csf3_U, CRISPR/Cas system-associated RAMP superfamily protein Csf3. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; RAMP superfamily protein.	4.71563e-40
NZ_AP021845.1\|WP_152090938.1\|9447_10539_+\|type-IV-CRISPR-associated-protein-Csf2	gnl\|CDD\|274435	TIGR03115, cas7_csf2, CRISPR type IV/AFERR-associated protein Csf2. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf2 (CRISPR/cas Subtype as in A. ferrooxidans protein 2), as it lies second closest to the repeats.	1.13098e-53
NZ_AP021845.1\|WP_152090937.1\|8688_9438_+\|hypothetical-protein	gnl\|CDD\|187836	cd09705, Csf1_U, CRISPR/Cas system-associated protein Csf1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Zn-finger domain containing protein; also known as Csf1 family.	1.66856e-36
NZ_AP021845.1\|WP_004883035.1\|1528_2596_-\|DUF1016-family-protein	gnl\|CDD\|227141	COG4804, COG4804, Predicted nuclease of restriction endonuclease-like fold [General function prediction only].	1.97931e-67

>NZ_AP021845.1|WP_152090939.1|10540_11263_+|hypothetical-protein
MTPLKITFQVSGGFVPPPYPLHLDALLAYAQTFDALGDVADEPGIPQLRALADDMPIQRFEKDGDWCYMASAVQPEGPVLNDARFYTQRMNQDDYSARVGREHIQHGRHKPGSPMERYQIQLETARGVHRNLLGFYPVQQSATSSGALLTLVGWCIAEKWWVEDRLLNGRITHIGARRRSGHGKIQSIAIEEDNLAMSQWRLRVRPWKLLDDDLEIRAAWKPPYWAPENRGTAFCSSQLI
>NZ_AP021845.1|WP_152090938.1|9447_10539_+|type-IV-CRISPR-associated-protein-Csf2
MNSIQIQLNLTSPLYIAYPDNVDKTANVSRTTKLRLMNNGRLYDLPIYPANGFRGGLRRAAAARVVEALSAKEGPVPGDLYLGLTCGASSASPDQTPKTVEEIIRGRGNVYMGLFGGGARLLSSMYRVSDMLPVLQATIETGAVPDYLAELVMPKFQKEGEPAKHAGPWEVMSERTSIRVDDLYRVMRPEEIKAYVKNPLETVAAHQDGVLANKEGRKTDGDTKTDVSNMMGIETVAPGVPFYFCIDLDKDVTPGQVGMLLLSLRDLFQENAFGGWTRCGFGKVRVNQIKIAYDDQDLAWSDFYGTSHFELPDAANVYTSQAQEEIGSLTTAEMASFFEDFSAGKKAEAKAKAKAKKTAPAEA
>NZ_AP021845.1|WP_152090937.1|8688_9438_+|hypothetical-protein
MRQITASHLTIQAAGIKAIGAVLAGPDHVGQRCAVCGADINPGDPIDKLDLPRTFTNQSSLAIPNGKWRCGACNAIMGNSEFQMGASTILVCSEGVFPIVRKEHRAWAFLTPPKPPFVIAIQNAKQQHVIWRAPVSLSKDLIMVRLGEQIFRLRRQKLLNCVEIAKRIDAARITPGRPVKDAIENPFVNDWKFQSAEGGRLKSWVWKLQAEQKIAPEDFMELTTLNGGEAWALTAFLSATITKPDPLNF
>NZ_AP021845.1|WP_172974821.1|8071_8692_+|hypothetical-protein
MLAKAADGRAILPPQFFHYGEDGKPLSTGEAEIRTIGSKNWVGVLSKTGNAELFDPCVGIATRVAANHYGSPAKMEVMELEYGLEAAAMPVFYNLSRAAFKRRSAKRRALSTEEIIKEYLLRQLNDEAERFGFDLPPDSALKIQVHHAKEMGMRLNLNTGLSNEYVSLVDANFSMYLELHGMWQIGNLQARGHGLIYRAKPGGVWS
>NZ_AP021845.1|WP_152090935.1|5373_7878_-|DEAD/DEAH-box-helicase-family-protein
MPTLNVPKSACSLLHAGFHPNDVSDEIRLFIRGAIQGLICQAIDDGIPPAELPAAAETGIPMNISFTKGHDRAIRNLSKEKKIREGDAALSYLYAAIARGDAIERRKSVSESPLHPYVAALGLTDRQHQNVFGEALIETLSGKSIGMVEGATGIGKTLGMVAAAAHVLEGRSFGRSLIAVPTLTLLRQFARQHQALADAIPEFPSARFILGKNEFVSVGELRILLDSGTFSEYSSTILGWLGQNGPSPSSDQAIDHRFLISSLIAIAPQFPVDAVRCGNLTDDGDPGMASYRAQFEVDESERLECEIIYCTHAMLAADIRRRMFGARSSEEGLEIRQRHRTIRQEAMGLRAALDDAGNEAYRDAGMDIKNSIDGELFELAAQAVALDAGILPSWQYLLIDEAHLFESNLANTFAFNLSLGRLLQHINAAQAEGAVSAAAAKRASKAMTIIRHAGENNDDINLKSTSPQARDVCAALNELLSIVTGVKPSKTSPTITTLKGQASVIRTALRLATTSVLGRSMLCYSPIRAFPQLSVGRASVSSELAFLWHSCEAGACVSATLYLRRLDKDSASYMAGILNIPTNRMREYPVIRPHWVTAPVAGLWIPESTKNPSGRLWLRPPTRSDKLDTEQYRLREEEWLEDLSAEIRKIQVSAAGGTLVLMTSYTSAKGLAERLADIDGLVVAEQGVSISRQVEGFVNQHSAGKKPLWIAVGGAWTGVDINGKDYGLATPGEDNLLTDLVIPRFPFGTNMSMTHRHRAEQASNVPWDLLDAAMRFKQGLGRLVRREGLPPNRRIYVLDGRMNEPTFDFFMSHLRRIIGIYPVKTLKRSAAIDD
>NZ_AP021845.1|WP_152090934.1|4030_5377_+|hypothetical-protein
MGKSHQQWREDLRKVMHELQALEDDEASLKGERRTSEEDLGKLKSRIDGLRRHLDDLAAAGCTAEEKLRKAKDRLAGYWPDLAADDHDQERSSPWAHPEWRAARIRVFLAALNLHQAFIEENASKMMANLGIAMDMLQGGIPDPKVRVQALDSLAIACPVISTTFASVPSLCGSMSSEGIGWLLIDEAGQATPQAAAGAIWRARRVVVVGDPLQLEPVVTLPRSVEASLAACNGGVNSRLHPSRTSVQKLADQTTAIGTTVGEGDDAIWVGAPLRVHRRCDEPMFSISNEVAYDGLMVHHKKPAALTWPASYWLDVPGGQGNGNWIPAEGEALRGLIQNLLGQAQVPADDIFLISPFRDVVRELKGMGKAFGLDYRRVGTVHTTQGKEADVVIMVLGGGTAGARDWASSRPNLLNVAASRAKARFYVVGDRKDWSKRRFFDVLSKNLS
>NZ_AP021845.1|WP_004883034.1|2592_3792_-|tyrosine-type-recombinase/integrase
MAKIKLTKSAVDAAQPQAEAVELRDTLVPGFLCKITPAGRKVFMLQYRTNAGERRKPSLGLYGELTVEQARSLAQEWLAQVRRGGDPAAEKAEARQAPTVKELCTKFMEDYSKKRNKLSTQAGYQAVINRNIIPLLGRKKVQDVKRPEIAGLMEKLSYKQTEANKVFSVLRKMFNMAEVWGYRPDGTNPCRHVPMFPAGKSTHLISDEEMGNLFRQLDKIESEGLENYVIPLGIRLQFEFAGRRSEIIALEWNWVDLQNRRVVWPDSKTGGMSKPMSEEAYRLLSTAPRQEGSRYVLPSPSHAGKHLTTGEYYGGWSRALKAAGATHVGTHGIRHRSATDIANSGIPVKVGMALTAHKTVVMFMRYVHTEDKPVREAAELVANRRKTITGMQGAKEVAA
>NZ_AP021845.1|WP_004883035.1|1528_2596_-|DUF1016-family-protein
MTRRKASVSAPAAPPALLGDIRALIEASRQRVASAVNAELTLLFWRIGQRIHTEVLAGQRAGYGDEILPTLAAQLVRDYGRSFADKNLRRMVQFAATFSDEPIVVTLSRQLSWSHFVALLPLKDPLQRDYYVQMASAERWSVRTLRERIDSMLYERTALSKKPDETITQELAAMRDAQRMSPALVMRDPYILDFLGLRDTWQEGDLEAAIIREMESFLLELGAGFSFLARQKRIQIDDEDFHLDLLFYNRKLRRLVAVELKIGEFKAAYKGQMELYLRWLDKHEREPEEASPLGIILCTGKKSEQIELLELDKSGIHVAEYLTTLPPRAVLGERLQQATERARLQIEQRQPGEKS
>NZ_AP021845.1|WP_004883036.1|41_1289_+|hypothetical-protein
MKNIFEEINEFSSEKIALFSFGKFCYVFLNKDPIFVKKLLPLIQTSLANESFQADVMRAYTEGCMNEKAAILKEFEAKRDHPNAAKFYGPQLDLVDKRLAIKTIQHLMDYLNNYLNEYPGSLEILNNSYKHIHDEDGVSYIKENYANYRIGCIFYSKHQSIMGRAEMLELKYSKVVEREYEKIGIDIRKEDAQFSKYSLVSLNENIQIFNDKDSQTIRDERIGRHFWIKVPRKLLTSIEELIEKGMLSEIAFRIDYVSDYVPAMEEMEFGAPLRLKISSLPRLSKFYSTDKYENNLWIHHDAEKLSLTFEELMEDFEVAGDDVVTQVIHLEYSSKGDDFFITHLDHEFIVYTLDSYQERLSNANIKGHRKIKTFKIDNSMIPFDINISGDLFLFQVLDSYLKNDDLIREYFEKIN
>NZ_AP021845.1|WP_152090940.1|12610_12820_-|hypothetical-protein
MSSLPKIDHQENAERNLGIAIDRLDEMRWAVVGVDSPDAECLAKFDEGVAKLKEALTVIRHSPSKTTGR
>NZ_AP021845.1|WP_152090941.1|12821_13283_-|hypothetical-protein
MNKADLIWWPDNKKGVIINAVAARDRATARFVVTRAIRLVFPMPIMVLASYLISTTLTFPDDAPGWVLTWVEWGPTTLAWACATMTLVVVAMLLIDWRRDRSAAVALACEASALGVDIAKLDGDWVFEALVLPMVRRKGITLPDGSVAHLTEE
>NZ_AP021845.1|WP_152090942.1|13293_13818_-|hypothetical-protein
MTLASCIGCGCDDLHACVDDLGPCSWIVVDRDAGRGVCSCCESHMERWNAGDRSVLMLVAKITRDGETEPYFIEKNGIGSFPYFLEVEAGDKFSIEWVEMSQEQFEALPQFEHVRLAEKWLEEITAAGDAESEGKMDEAGTHRAEAQRLSEKVAERGFDVLDLIEADELPASLL
>NZ_AP021845.1|WP_152090943.1|14138_14459_-|hypothetical-protein
MKIDPHEVTSRSIAVVSEVPLIATQWHRHGDHPRVHGMNGSNWELFPDEDDVRYGLLSGGHSGCLLVESGDWIVWNEVFKTYAIFKPDQFEALFSTSAAAIAPSER
>NZ_AP021845.1|WP_152090944.1|14759_15089_-|hypothetical-protein
MTPNWQPIEALPLIAGMLDDQLHSLHTQVGNLEQCRHRPWVLDGETVNRLQAVFGEQMDSLPVFREQLARWLELPLDEHQRQEINRLNAVLDQMKAAIERILSLAGNIR
>NZ_AP021845.1|WP_152090945.1|15091_15607_-|hypothetical-protein
MEEYSRPATLDDLKALIASLNEQCADYLLIGGYALFAHGYHRATTDIDVLVPATQEAGIKIRSALMVLPDQAAKNIDPAWFDEGENIRVADAFIVDIMLNACGETYETLKKYAETLDVDGVPVRTINLEGLLLTKQTMREKDVSDRIILERALETLKERVSKPESDHGLGL
>NZ_AP021845.1|WP_152090946.1|15606_15834_-|hypothetical-protein
MRTIGRRKEHPITFSASAELLVEGARFNDEIHRLPTGNTTHIPKGLYRFKSFEEANQHQQDCLVAGMAKIALERK
>NZ_AP021845.1|WP_152090947.1|15850_16288_-|hypothetical-protein
MEYRDFLKEIPEGLGATEKTLQLWFVIYQWILEHGYADSADSPAFLQHINAFRKCSTQTVATHLRRMSDAKLIKRYVLRRKLSGEAKEELSIGSLLFAPGAESIPTTFVRYCLPGQQCPTEFKSYEAAVSALDGRMNAIRETVRP
>NZ_AP021845.1|WP_152090948.1|16290_16860_-|hypothetical-protein
MNTLETQNASTVIDMATAVRERASIKVYANGNLVGEISIAEHEAFKLAAKNDRSLYREQALNYLEATFRLVGRIVLSIPENWFVIAVLLALMMPSEFNSLVSAIIANPSTSSTEFLNTVRWALAASIASTALVAVISGESFGLANVFDDRVAMMIRAKFKLPPMCKLFVDAEQILDGLPSHQAPTHFGK
>NZ_AP021845.1|WP_152090949.1|16868_17072_-|hypothetical-protein
MAEFTILVGDEVVRLTKKEVEALRKSLKTDVLVTPEDWTRSELQSRSQARKKLMDALYSAEKDIILR

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Crispr_ID: NZ_AP021845_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_AP021845_3

12193-12294

TypeIV-A

Consensus_repeat	Method
GTTGGAGGCACCGCTCAGATGAGGGGTGGTTACAGG	CRISPRCasFinder

1 spacers

csf3gr5,csf2gr7,csf1gr8,csf5gr6,DinG,PD-DExK

The CRISPR arrays of NZ_AP021845_3

>merge|NZ_AP021845|3|12193-12294|CRISPRCasFinder
GTTGGAGGCACCGCTCAGATGAGGGGTGGTTACAGGGAATATCGGTTCTGCGGTCGCAGATTGGCCGTTGGAGGCACCGCTCAGATGAGGGGTGGTTACAGG

>NZ_AP021845|3|3|12193-12294|CRISPRCasFinder
GTTGGAGGCACCGCTCAGATGAGGGGTGGTTACAGG	GAATATCGGTTCTGCGGTCGCAGATTGGCC
GTTGGAGGCACCGCTCAGATGAGGGGTGGTTACAGG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_AP021845.1\|WP_004883034.1\|2592_3792_-\|tyrosine-type-recombinase/integrase	unknown	unknown	gnl\|CDD\|271177
NZ_AP021845.1\|WP_152090940.1\|12610_12820_-\|hypothetical-protein	unknown	unknown	unknown
NZ_AP021845.1\|WP_152090942.1\|13293_13818_-\|hypothetical-protein	unknown	unknown	unknown
NZ_AP021845.1\|WP_152090947.1\|15850_16288_-\|hypothetical-protein	unknown	unknown	unknown
NZ_AP021845.1\|WP_152090949.1\|16868_17072_-\|hypothetical-protein	unknown	unknown	unknown
NZ_AP021845.1\|WP_152090941.1\|12821_13283_-\|hypothetical-protein	unknown	unknown	unknown
NZ_AP021845.1\|WP_152090939.1\|10540_11263_+\|hypothetical-protein	csf3gr5	cd09707_csf3gr5_CAS-IV-A	gnl\|CDD\|187838
NZ_AP021845.1\|WP_004883035.1\|1528_2596_-\|DUF1016-family-protein	PD-DExK	COG4804_PD-DExK_CAS-I:CAS-III	gnl\|CDD\|227141
NZ_AP021845.1\|WP_152090935.1\|5373_7878_-\|DEAD/DEAH-box-helicase-family-protein	DinG	cd09708_DinG_CAS-IV-A	gnl\|CDD\|187839
NZ_AP021845.1\|WP_172974821.1\|8071_8692_+\|hypothetical-protein	csf5gr6	mkCas0159_csf5gr6_CAS-IV-A	unknown
NZ_AP021845.1\|WP_152090946.1\|15606_15834_-\|hypothetical-protein	unknown	unknown	unknown
NZ_AP021845.1\|WP_152090934.1\|4030_5377_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|224037
NZ_AP021845.1\|WP_152090943.1\|14138_14459_-\|hypothetical-protein	unknown	unknown	unknown
NZ_AP021845.1\|WP_152090938.1\|9447_10539_+\|type-IV-CRISPR-associated-protein-Csf2	csf2gr7	cd09706_csf2gr7_CAS-IV-A	gnl\|CDD\|274435
NZ_AP021845.1\|WP_152090948.1\|16290_16860_-\|hypothetical-protein	unknown	unknown	unknown
NZ_AP021845.1\|WP_152090945.1\|15091_15607_-\|hypothetical-protein	unknown	unknown	unknown
NZ_AP021845.1\|WP_152090944.1\|14759_15089_-\|hypothetical-protein	unknown	unknown	unknown
NZ_AP021845.1\|WP_004883036.1\|41_1289_+\|hypothetical-protein	unknown	unknown	unknown
NZ_AP021845.1\|WP_152090937.1\|8688_9438_+\|hypothetical-protein	csf1gr8	cd09705_csf1gr8_CAS-IV-A	gnl\|CDD\|187836

Protein	Function_ID	Function_description	E-value
NZ_AP021845.1\|WP_152090935.1\|5373_7878_-\|DEAD/DEAH-box-helicase-family-protein	gnl\|CDD\|187839	cd09708, Csf4_U, CRISPR/Cas system-associated DinG family helicase Csf4. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; DinG family DNA helicase.	2.5316e-100
NZ_AP021845.1\|WP_004883034.1\|2592_3792_-\|tyrosine-type-recombinase/integrase	gnl\|CDD\|271177	cd00796, INT_Rci_Hp1_C, Shufflon-specific DNA recombinase Rci and Bacteriophage Hp1_like integrase, C-terminal catalytic domain. Rci protein is a tyrosine recombinase specifically involved in Shufflon type of DNA rearrangement in bacteria. The shufflon of plasmid R64 consists of four invertible DNA segments which are separated and flanked by seven 19-bp repeat sequences. RCI recombinase facilitates the site-specific recombination between any inverted repeats results in an inversion of the DNA segment(s) either independently or in groups. HP1 integrase promotes site-specific recombination of the HP1 genome into that of Haemophilus influenza. Bacteriophage Hp1_like integrases are tyrosine based site specific recombinases. They belong to the superfamily of DNA breaking-rejoining enzymes, which share the same fold in their catalytic domain and the overall reaction mechanism. The catalytic domain contains six conserved active site residues. Their overall reaction mechanism is essentially identical and involves cleavage of a single strand of a DNA duplex by nucleophilic attack of a conserved tyrosine to give a 3' phosphotyrosyl protein-DNA adduct. In the second rejoining step, a terminal 5' hydroxyl attacks the covalent adduct to release the enzyme and generate duplex DNA.	8.38812e-24
NZ_AP021845.1\|WP_152090934.1\|4030_5377_+\|hypothetical-protein	gnl\|CDD\|224037	COG1112, COG1112, Superfamily I DNA and RNA helicases and helicase subunits [DNA replication, recombination, and repair].	9.4518e-34
NZ_AP021845.1\|WP_152090939.1\|10540_11263_+\|hypothetical-protein	gnl\|CDD\|187838	cd09707, Csf3_U, CRISPR/Cas system-associated RAMP superfamily protein Csf3. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; RAMP superfamily protein.	4.71563e-40
NZ_AP021845.1\|WP_152090938.1\|9447_10539_+\|type-IV-CRISPR-associated-protein-Csf2	gnl\|CDD\|274435	TIGR03115, cas7_csf2, CRISPR type IV/AFERR-associated protein Csf2. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf2 (CRISPR/cas Subtype as in A. ferrooxidans protein 2), as it lies second closest to the repeats.	1.13098e-53
NZ_AP021845.1\|WP_152090937.1\|8688_9438_+\|hypothetical-protein	gnl\|CDD\|187836	cd09705, Csf1_U, CRISPR/Cas system-associated protein Csf1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Zn-finger domain containing protein; also known as Csf1 family.	1.66856e-36
NZ_AP021845.1\|WP_004883035.1\|1528_2596_-\|DUF1016-family-protein	gnl\|CDD\|227141	COG4804, COG4804, Predicted nuclease of restriction endonuclease-like fold [General function prediction only].	1.97931e-67

>NZ_AP021845.1|WP_152090939.1|10540_11263_+|hypothetical-protein
MTPLKITFQVSGGFVPPPYPLHLDALLAYAQTFDALGDVADEPGIPQLRALADDMPIQRFEKDGDWCYMASAVQPEGPVLNDARFYTQRMNQDDYSARVGREHIQHGRHKPGSPMERYQIQLETARGVHRNLLGFYPVQQSATSSGALLTLVGWCIAEKWWVEDRLLNGRITHIGARRRSGHGKIQSIAIEEDNLAMSQWRLRVRPWKLLDDDLEIRAAWKPPYWAPENRGTAFCSSQLI
>NZ_AP021845.1|WP_152090938.1|9447_10539_+|type-IV-CRISPR-associated-protein-Csf2
MNSIQIQLNLTSPLYIAYPDNVDKTANVSRTTKLRLMNNGRLYDLPIYPANGFRGGLRRAAAARVVEALSAKEGPVPGDLYLGLTCGASSASPDQTPKTVEEIIRGRGNVYMGLFGGGARLLSSMYRVSDMLPVLQATIETGAVPDYLAELVMPKFQKEGEPAKHAGPWEVMSERTSIRVDDLYRVMRPEEIKAYVKNPLETVAAHQDGVLANKEGRKTDGDTKTDVSNMMGIETVAPGVPFYFCIDLDKDVTPGQVGMLLLSLRDLFQENAFGGWTRCGFGKVRVNQIKIAYDDQDLAWSDFYGTSHFELPDAANVYTSQAQEEIGSLTTAEMASFFEDFSAGKKAEAKAKAKAKKTAPAEA
>NZ_AP021845.1|WP_152090937.1|8688_9438_+|hypothetical-protein
MRQITASHLTIQAAGIKAIGAVLAGPDHVGQRCAVCGADINPGDPIDKLDLPRTFTNQSSLAIPNGKWRCGACNAIMGNSEFQMGASTILVCSEGVFPIVRKEHRAWAFLTPPKPPFVIAIQNAKQQHVIWRAPVSLSKDLIMVRLGEQIFRLRRQKLLNCVEIAKRIDAARITPGRPVKDAIENPFVNDWKFQSAEGGRLKSWVWKLQAEQKIAPEDFMELTTLNGGEAWALTAFLSATITKPDPLNF
>NZ_AP021845.1|WP_172974821.1|8071_8692_+|hypothetical-protein
MLAKAADGRAILPPQFFHYGEDGKPLSTGEAEIRTIGSKNWVGVLSKTGNAELFDPCVGIATRVAANHYGSPAKMEVMELEYGLEAAAMPVFYNLSRAAFKRRSAKRRALSTEEIIKEYLLRQLNDEAERFGFDLPPDSALKIQVHHAKEMGMRLNLNTGLSNEYVSLVDANFSMYLELHGMWQIGNLQARGHGLIYRAKPGGVWS
>NZ_AP021845.1|WP_152090935.1|5373_7878_-|DEAD/DEAH-box-helicase-family-protein
MPTLNVPKSACSLLHAGFHPNDVSDEIRLFIRGAIQGLICQAIDDGIPPAELPAAAETGIPMNISFTKGHDRAIRNLSKEKKIREGDAALSYLYAAIARGDAIERRKSVSESPLHPYVAALGLTDRQHQNVFGEALIETLSGKSIGMVEGATGIGKTLGMVAAAAHVLEGRSFGRSLIAVPTLTLLRQFARQHQALADAIPEFPSARFILGKNEFVSVGELRILLDSGTFSEYSSTILGWLGQNGPSPSSDQAIDHRFLISSLIAIAPQFPVDAVRCGNLTDDGDPGMASYRAQFEVDESERLECEIIYCTHAMLAADIRRRMFGARSSEEGLEIRQRHRTIRQEAMGLRAALDDAGNEAYRDAGMDIKNSIDGELFELAAQAVALDAGILPSWQYLLIDEAHLFESNLANTFAFNLSLGRLLQHINAAQAEGAVSAAAAKRASKAMTIIRHAGENNDDINLKSTSPQARDVCAALNELLSIVTGVKPSKTSPTITTLKGQASVIRTALRLATTSVLGRSMLCYSPIRAFPQLSVGRASVSSELAFLWHSCEAGACVSATLYLRRLDKDSASYMAGILNIPTNRMREYPVIRPHWVTAPVAGLWIPESTKNPSGRLWLRPPTRSDKLDTEQYRLREEEWLEDLSAEIRKIQVSAAGGTLVLMTSYTSAKGLAERLADIDGLVVAEQGVSISRQVEGFVNQHSAGKKPLWIAVGGAWTGVDINGKDYGLATPGEDNLLTDLVIPRFPFGTNMSMTHRHRAEQASNVPWDLLDAAMRFKQGLGRLVRREGLPPNRRIYVLDGRMNEPTFDFFMSHLRRIIGIYPVKTLKRSAAIDD
>NZ_AP021845.1|WP_152090934.1|4030_5377_+|hypothetical-protein
MGKSHQQWREDLRKVMHELQALEDDEASLKGERRTSEEDLGKLKSRIDGLRRHLDDLAAAGCTAEEKLRKAKDRLAGYWPDLAADDHDQERSSPWAHPEWRAARIRVFLAALNLHQAFIEENASKMMANLGIAMDMLQGGIPDPKVRVQALDSLAIACPVISTTFASVPSLCGSMSSEGIGWLLIDEAGQATPQAAAGAIWRARRVVVVGDPLQLEPVVTLPRSVEASLAACNGGVNSRLHPSRTSVQKLADQTTAIGTTVGEGDDAIWVGAPLRVHRRCDEPMFSISNEVAYDGLMVHHKKPAALTWPASYWLDVPGGQGNGNWIPAEGEALRGLIQNLLGQAQVPADDIFLISPFRDVVRELKGMGKAFGLDYRRVGTVHTTQGKEADVVIMVLGGGTAGARDWASSRPNLLNVAASRAKARFYVVGDRKDWSKRRFFDVLSKNLS
>NZ_AP021845.1|WP_004883034.1|2592_3792_-|tyrosine-type-recombinase/integrase
MAKIKLTKSAVDAAQPQAEAVELRDTLVPGFLCKITPAGRKVFMLQYRTNAGERRKPSLGLYGELTVEQARSLAQEWLAQVRRGGDPAAEKAEARQAPTVKELCTKFMEDYSKKRNKLSTQAGYQAVINRNIIPLLGRKKVQDVKRPEIAGLMEKLSYKQTEANKVFSVLRKMFNMAEVWGYRPDGTNPCRHVPMFPAGKSTHLISDEEMGNLFRQLDKIESEGLENYVIPLGIRLQFEFAGRRSEIIALEWNWVDLQNRRVVWPDSKTGGMSKPMSEEAYRLLSTAPRQEGSRYVLPSPSHAGKHLTTGEYYGGWSRALKAAGATHVGTHGIRHRSATDIANSGIPVKVGMALTAHKTVVMFMRYVHTEDKPVREAAELVANRRKTITGMQGAKEVAA
>NZ_AP021845.1|WP_004883035.1|1528_2596_-|DUF1016-family-protein
MTRRKASVSAPAAPPALLGDIRALIEASRQRVASAVNAELTLLFWRIGQRIHTEVLAGQRAGYGDEILPTLAAQLVRDYGRSFADKNLRRMVQFAATFSDEPIVVTLSRQLSWSHFVALLPLKDPLQRDYYVQMASAERWSVRTLRERIDSMLYERTALSKKPDETITQELAAMRDAQRMSPALVMRDPYILDFLGLRDTWQEGDLEAAIIREMESFLLELGAGFSFLARQKRIQIDDEDFHLDLLFYNRKLRRLVAVELKIGEFKAAYKGQMELYLRWLDKHEREPEEASPLGIILCTGKKSEQIELLELDKSGIHVAEYLTTLPPRAVLGERLQQATERARLQIEQRQPGEKS
>NZ_AP021845.1|WP_004883036.1|41_1289_+|hypothetical-protein
MKNIFEEINEFSSEKIALFSFGKFCYVFLNKDPIFVKKLLPLIQTSLANESFQADVMRAYTEGCMNEKAAILKEFEAKRDHPNAAKFYGPQLDLVDKRLAIKTIQHLMDYLNNYLNEYPGSLEILNNSYKHIHDEDGVSYIKENYANYRIGCIFYSKHQSIMGRAEMLELKYSKVVEREYEKIGIDIRKEDAQFSKYSLVSLNENIQIFNDKDSQTIRDERIGRHFWIKVPRKLLTSIEELIEKGMLSEIAFRIDYVSDYVPAMEEMEFGAPLRLKISSLPRLSKFYSTDKYENNLWIHHDAEKLSLTFEELMEDFEVAGDDVVTQVIHLEYSSKGDDFFITHLDHEFIVYTLDSYQERLSNANIKGHRKIKTFKIDNSMIPFDINISGDLFLFQVLDSYLKNDDLIREYFEKIN
>NZ_AP021845.1|WP_152090940.1|12610_12820_-|hypothetical-protein
MSSLPKIDHQENAERNLGIAIDRLDEMRWAVVGVDSPDAECLAKFDEGVAKLKEALTVIRHSPSKTTGR
>NZ_AP021845.1|WP_152090941.1|12821_13283_-|hypothetical-protein
MNKADLIWWPDNKKGVIINAVAARDRATARFVVTRAIRLVFPMPIMVLASYLISTTLTFPDDAPGWVLTWVEWGPTTLAWACATMTLVVVAMLLIDWRRDRSAAVALACEASALGVDIAKLDGDWVFEALVLPMVRRKGITLPDGSVAHLTEE
>NZ_AP021845.1|WP_152090942.1|13293_13818_-|hypothetical-protein
MTLASCIGCGCDDLHACVDDLGPCSWIVVDRDAGRGVCSCCESHMERWNAGDRSVLMLVAKITRDGETEPYFIEKNGIGSFPYFLEVEAGDKFSIEWVEMSQEQFEALPQFEHVRLAEKWLEEITAAGDAESEGKMDEAGTHRAEAQRLSEKVAERGFDVLDLIEADELPASLL
>NZ_AP021845.1|WP_152090943.1|14138_14459_-|hypothetical-protein
MKIDPHEVTSRSIAVVSEVPLIATQWHRHGDHPRVHGMNGSNWELFPDEDDVRYGLLSGGHSGCLLVESGDWIVWNEVFKTYAIFKPDQFEALFSTSAAAIAPSER
>NZ_AP021845.1|WP_152090944.1|14759_15089_-|hypothetical-protein
MTPNWQPIEALPLIAGMLDDQLHSLHTQVGNLEQCRHRPWVLDGETVNRLQAVFGEQMDSLPVFREQLARWLELPLDEHQRQEINRLNAVLDQMKAAIERILSLAGNIR
>NZ_AP021845.1|WP_152090945.1|15091_15607_-|hypothetical-protein
MEEYSRPATLDDLKALIASLNEQCADYLLIGGYALFAHGYHRATTDIDVLVPATQEAGIKIRSALMVLPDQAAKNIDPAWFDEGENIRVADAFIVDIMLNACGETYETLKKYAETLDVDGVPVRTINLEGLLLTKQTMREKDVSDRIILERALETLKERVSKPESDHGLGL
>NZ_AP021845.1|WP_152090946.1|15606_15834_-|hypothetical-protein
MRTIGRRKEHPITFSASAELLVEGARFNDEIHRLPTGNTTHIPKGLYRFKSFEEANQHQQDCLVAGMAKIALERK
>NZ_AP021845.1|WP_152090947.1|15850_16288_-|hypothetical-protein
MEYRDFLKEIPEGLGATEKTLQLWFVIYQWILEHGYADSADSPAFLQHINAFRKCSTQTVATHLRRMSDAKLIKRYVLRRKLSGEAKEELSIGSLLFAPGAESIPTTFVRYCLPGQQCPTEFKSYEAAVSALDGRMNAIRETVRP
>NZ_AP021845.1|WP_152090948.1|16290_16860_-|hypothetical-protein
MNTLETQNASTVIDMATAVRERASIKVYANGNLVGEISIAEHEAFKLAAKNDRSLYREQALNYLEATFRLVGRIVLSIPENWFVIAVLLALMMPSEFNSLVSAIIANPSTSSTEFLNTVRWALAASIASTALVAVISGESFGLANVFDDRVAMMIRAKFKLPPMCKLFVDAEQILDGLPSHQAPTHFGK
>NZ_AP021845.1|WP_152090949.1|16868_17072_-|hypothetical-protein
MAEFTILVGDEVVRLTKKEVEALRKSLKTDVLVTPEDWTRSELQSRSQARKKLMDALYSAEKDIILR

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Crispr_ID: NZ_AP021845_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_AP021845_4

307466-307630

Orphan

Consensus_repeat	Method
TTGCACGTCAACGTGCA	PILER-CR

3 spacers

The CRISPR arrays of NZ_AP021845_4

>merge|NZ_AP021845|4|307466-307630|PILER-CR
TTGCACGTCGACGTGCAAAACACGCTGACGGGGAGGGAGGCGCATGGGCTGCACGTTGACGTGCATTGCCGAGCACCAAGGGGTGATGCGAGAGGAGGGCTGTGCGGATTGCACGTCAACGTGCATCGCTGACATCCCTGGAATCCGATTGCACGTCAACGTGCA

>NZ_AP021845|4|1|307466-307630|PILER-CR
TTGCACGTCGACGTGCA	AAACACGCTGACGGGGAGGGAGGCGCATGGG
CTGCACGTTGACGTGCA	TTGCCGAGCACCAAGGGGTGATGCGAGAGGAGGGCTGTGCGGA
TTGCACGTCAACGTGCA	TCGCTGACATCCCTGGAATCCGA
TTGCACGTCAACGTGCA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_AP021845.1\|WP_152091270.1\|309895_310324_-\|hypothetical-protein	unknown	unknown	unknown
NZ_AP021845.1\|WP_152091274.1\|313676_314798_-\|restriction-endonuclease	unknown	unknown	gnl\|CDD\|377369
NZ_AP021845.1\|WP_152091269.1\|308759_309899_-\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|224113
NZ_AP021845.1\|WP_152091258.1\|298723_299683_-\|hypothetical-protein	unknown	unknown	unknown
NZ_AP021845.1\|WP_152091275.1\|314875_315796_-\|recombination-associated-protein-RdgC	unknown	unknown	gnl\|CDD\|377338
NZ_AP021845.1\|WP_152091266.1\|305013_305346_-\|hypothetical-protein	unknown	unknown	unknown
NZ_AP021845.1\|WP_152091268.1\|307728_308742_-\|ParB-N-terminal-domain-containing-protein	unknown	unknown	gnl\|CDD\|272946
NZ_AP021845.1\|WP_152091267.1\|305586_306732_-\|hypothetical-protein	unknown	unknown	unknown
NZ_AP021845.1\|WP_152091265.1\|304361_305027_-\|hypothetical-protein	unknown	unknown	unknown
NZ_AP021845.1\|WP_152091259.1\|300076_300421_-\|KTSC-domain-containing-protein	unknown	unknown	gnl\|CDD\|379296
NZ_AP021845.1\|WP_152091262.1\|301730_302669_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|236766
NZ_AP021845.1\|WP_152091261.1\|300765_301308_-\|single-stranded-DNA-binding-protein	unknown	unknown	gnl\|CDD\|180777
NZ_AP021845.1\|WP_152091260.1\|300423_300684_-\|hypothetical-protein	unknown	unknown	unknown
NZ_AP021845.1\|WP_152091277.1\|317776_318742_-\|hypothetical-protein	unknown	unknown	unknown
NZ_AP021845.1\|WP_152091264.1\|303146_304286_-\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|223786
NZ_AP021845.1\|WP_152091272.1\|311091_312549_-\|RepB-family-plasmid-replication-initiator-protein	unknown	unknown	gnl\|CDD\|376444
NZ_AP021845.1\|WP_152091263.1\|302680_303136_-\|hypothetical-protein	unknown	unknown	unknown
NZ_AP021845.1\|WP_152091273.1\|313182_313680_+\|hypothetical-protein	unknown	unknown	unknown
NZ_AP021845.1\|WP_152091276.1\|315816_317793_-\|DEAD/DEAH-box-helicase	unknown	unknown	gnl\|CDD\|236794
NZ_AP021845.1\|WP_152091271.1\|310495_311095_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_AP021845.1\|WP_152091259.1\|300076_300421_-\|KTSC-domain-containing-protein	gnl\|CDD\|379296	pfam13619, KTSC, KTSC domain. This short domain is named after Lysine tRNA synthetase C-terminal domain. It is found at the C-terminus of some Lysyl tRNA synthetases as well as a single domain in bacterial proteins. The domain is about 60 amino acids in length and contains a reasonably conserved YXY motif in the centre of the sequence. The function of this domain is unknown but it could be an RNA binding domain.	3.71115e-17
NZ_AP021845.1\|WP_152091269.1\|308759_309899_-\|AAA-family-ATPase	gnl\|CDD\|224113	COG1192, Soj, ATPases involved in chromosome partitioning [Cell division and chromosome partitioning].	4.51626e-30
NZ_AP021845.1\|WP_152091262.1\|301730_302669_-\|hypothetical-protein	gnl\|CDD\|236766	PRK10811, rne, ribonuclease E; Reviewed.	0.00869296
NZ_AP021845.1\|WP_152091261.1\|300765_301308_-\|single-stranded-DNA-binding-protein	gnl\|CDD\|180777	PRK06958, PRK06958, single-stranded DNA-binding protein; Provisional.	1.03734e-69
NZ_AP021845.1\|WP_152091274.1\|313676_314798_-\|restriction-endonuclease	gnl\|CDD\|377369	pfam04471, Mrr_cat, Restriction endonuclease. Prokaryotic family found in type II restriction enzymes containing the hallmark (D/E)-(D/E)XK active site. Presence of catalytic residues implicates this region in the enzymatic cleavage of DNA.	5.92105e-10
NZ_AP021845.1\|WP_152091275.1\|314875_315796_-\|recombination-associated-protein-RdgC	gnl\|CDD\|377338	pfam04381, RdgC, Putative exonuclease, RdgC. Members of the RdgC family may have exonuclease activity. RdgC is required for efficient pilin variation in Neisseria gonorrhoeae, suggesting that it may be involved in recombination reactions. In Escherichia coli, RdgC is required for growth in recombination-deficient exonuclease-depleted strains. Under these conditions, RdgC may act as an exonuclease to remove collapsed replication forks, in the absence of the normal repair mechanisms.	2.96504e-152
NZ_AP021845.1\|WP_152091264.1\|303146_304286_-\|AAA-family-ATPase	gnl\|CDD\|223786	COG0714, COG0714, MoxR-like ATPases [General function prediction only].	2.43952e-14
NZ_AP021845.1\|WP_152091268.1\|307728_308742_-\|ParB-N-terminal-domain-containing-protein	gnl\|CDD\|272946	TIGR00180, Probable_chromosome-partitioning_protein_ParB, ParB/RepB/Spo0J family partition protein. This model represents the most well-conserved core of a set of chromosomal and plasmid partition proteins related to ParB, including Spo0J, RepB, and SopB. Spo0J has been shown to bind a specific DNA sequence that, when introduced into a plasmid, can serve as partition site. Study of RepB, which has nicking-closing activity, suggests that it forms a transient protein-DNA covalent intermediate during the strand transfer reaction.	5.53732e-09
NZ_AP021845.1\|WP_152091276.1\|315816_317793_-\|DEAD/DEAH-box-helicase	gnl\|CDD\|236794	PRK10917, PRK10917, ATP-dependent DNA helicase RecG; Provisional.	3.71206e-112
NZ_AP021845.1\|WP_152091272.1\|311091_312549_-\|RepB-family-plasmid-replication-initiator-protein	gnl\|CDD\|376444	pfam01051, Rep_3, Initiator Replication protein. This protein is an initiator of plasmid replication. RepB possesses nicking-closing (topoisomerase I) like activity. It is also able to perform a strand transfer reaction on ssDNA that contains its target. This family also includes RepA which is an E.coli protein involved in plasmid replication. The RepA protein binds to DNA repeats that flank the repA gene.	2.46742e-08

>NZ_AP021845.1|WP_152091267.1|305586_306732_-|hypothetical-protein
MQAIIAAGVAADNPLAPIFARKATLAKMAECSEVTVYRAMRQLEDAGWISRSEQVRLDDGSMDIGLLSITKKLATLVGLCLDEEVHGSAEESKRSQDIDSEPITVNNKKHTLTQNIAGREGAPTAAALVGNGPKQDGSDAKLCTQMKDGLIAGPIYRGEQRVDPKASVNYQSTRPGFVRIDGRSVAQELVWLIEEKRLTFGALFQLQTLAKQVPGQTLSDFVAYRSERIKQLTTTNDCYRYLKKLISDGIDARYLCAQRAKKEHRVMRRQQRDKAASSRAAWCRARHEMTFLNTQTGVTYRINANHELLEVGENGLPTSRPNLAITSKFIKAVEEGRLVPFRIQEPVINLELGNRRLDEMASKFPWLRRKGKGSPVEEVRA
>NZ_AP021845.1|WP_152091266.1|305013_305346_-|hypothetical-protein
MSSAVLQGAQVPLVAEFHQGTQVLIRWALWHKQHAYPKAILIGVFRKEDIRLVVYQYGKALCVAVKMADVAPKIRDWREWRQRYATVKGKLIQRGFALVDEREEVSHVAH
>NZ_AP021845.1|WP_152091265.1|304361_305027_-|hypothetical-protein
MSLTDFDLFGHPVAAPQNVTPPRRRVVSQAAKRAKLARHLEKSNNLVLFDELLDFLKAPLLKQQYDMDATFASDVGTVAVIEVDEDGNTQDEDSALVIPYEAWGEEWVTDSNGLAWSKEGLLFTQVRLFWRSMEELALNNNEQEKWSVLRWIFRPAIWKHYVYDKRIGRSHCFEVHERDETFSFHNCCIAARVDEDTVREGVRRNIPAEVVKAVEKVCKFD
>NZ_AP021845.1|WP_152091264.1|303146_304286_-|AAA-family-ATPase
MFDLSAILVQVSYSLCEVFGLDPNEVDPSITVDGFEIPDPSTLTDPVAQQYAAFLRAAVPPIDPYYQFRKDLVRDIRYWWLTGEGDVLLLWGPTGSGKTSVFEQWCARLGIPLFMAKGHRRFEPMEAFGQFVGGENGTTPWVDGPVTLAARYGLPCIINEYDRIAADRTIVFNDVFEGRSFPIPGKSGEVVTPQPGFRVAITANTNLVEDLSGNYGTANTHDISILERIVALHVGYPSDDTEAKLLEKELEQFSDDLLSYWFDQEGIKISTPQGMKEGSAINRGEFIQGLLEVAKKIRAQSKDGGNTSDSALERTMSTRILRKWARHSVAQASAPEKLGLSALHLALKKYLSSLSTESTRIALHQAVENVFGVGEVVKP
>NZ_AP021845.1|WP_152091263.1|302680_303136_-|hypothetical-protein
MSNNKFVGVAYWSVATQVADWLARAVDVLMPLERAGIAVLAYDCLPGGNQLTVTFGEERHQMLVTDGKGRGVVRASEAAAVFVVCLVALRKALGDISVVTDSQETVPALPRQNYPLYADSWQRVLPVAQELGLATGAAFTARHNAVLNNVF
>NZ_AP021845.1|WP_152091262.1|301730_302669_-|hypothetical-protein
MSAHIIDKLLFLVIIVAAARVLWRFYPYRQVVVEEDSREVVAPEVQTQPEVVQQQMDAAPVSSEREQVTASPLFVRHLNDMATLMVRYRHRKQACTAHLIVWSGSKRKGYSDSYFDLGLIEGQELTEQVIEQSLALAKQQLVDLAEKGKRKRRESKKQKQEAAAVAEVVVAEAAVSEVVVAEVAEAPADVAIVAATEVVEQKAEVPPLVVEDTPPESIKLRKFPSVYRGIIKEIGMMTQNKDGREFETFGVRFETQEGIVDAVFGVNLREALRDAKADVGDQVEILKIGRKTITKGKAPMNLFKIAKLECTA
>NZ_AP021845.1|WP_152091261.1|300765_301308_-|single-stranded-DNA-binding-protein
MASVNKVILVGNVGADPETRYMPNGDAVCNLRLATTESWKDKNSGEKRELTEWHRIVCYRKLAEITSQYVKKGSQLYLEGRIKTRKWQDKDGQDRYTTEIEMTEMQMLGNRRSGDSDGSGDDRPPRQHSAGGGGNGEPPARERRPAPAYDPMEDDIPFCRVDMNADPAFVKASARVRRVA
>NZ_AP021845.1|WP_152091260.1|300423_300684_-|hypothetical-protein
MYGAPYLGYGCEIVHSFNTLIDAIKRRQVLRPRSKLAINLAGGDIEVNLLPNGFVELDGKVQPVAVEKEIEDAMQQFGAVLKEVLV
>NZ_AP021845.1|WP_152091259.1|300076_300421_-|KTSC-domain-containing-protein
MHPNFTPVSSSNIDGYLYMPDRKILLIAFKSGGTYAYEDVEQPVATGFAQASSKGKFFRSDIKDRYATSKLDDMAVANLLGGMGASVPPQPRRKAPRVTLQSLLSRYPMLNAVF
>NZ_AP021845.1|WP_152091258.1|298723_299683_-|hypothetical-protein
MQKDQSSLAGTLPANRRTIVAMPDPILGSLRWPNRPKLPEGNPCWTYMVEGTREQYAVAVGHVENGRPHPFEVWVLANEQPRCLGAMAKTLSADMRTQDRAWLTRKLEVLASVTGDLAIDLPLGTERLLASSNTAAVARIVQYRLNQLGVANPEEGEATPLVDALLPVRDAGHEGTLSWTADIKNPSSGDDFTVFLPEVQTEDGQHRPVAVRLSGRYPRDLDGLAAILTMDMAVVDVAWIGMKLRKLLDYDEPMGSFLAKTPGTGKTERYSSIVAYLARLILHRYATLGLLTASGYPVVEMGVMVSVPGDASNVVPIAA
>NZ_AP021845.1|WP_152091268.1|307728_308742_-|ParB-N-terminal-domain-containing-protein
MKQRVIKRPDMPLTALGAPAPGADTSTDKGELPAVSATTQPPSPPLLHLAGAEEVVDIPVSKLRVSPCNARKIRLPKRVSKIAESLKNNGQKDPLYVYPGAGDDEGYFMVLGGETRRLGALQIALPTLKAFVDRKVDPTDALNLTKISNILNDSADECDLDRGMVAIDLLEKGHTQGEVAEVLELESHTHVQRLIKLAGLPKRFIDFGQDYPERFSASLGAYISQAIDRHGEDFAHDLLKAALVDELPHRKIAKAIEAGPSDKQPGQERGKRLRRDGGFDIPTPDAPGGRYDVYKSKTPGLKVLKLQVEVPDELAKDLNEKLTEVLTQFIQTSRDQQ
>NZ_AP021845.1|WP_152091269.1|308759_309899_-|AAA-family-ATPase
MSDLRPTYAYIGAVEHRLKSAAALLGVSENTLRTTLAESGIEVRRANQDNPNAPAVRLFDLPTIFQIAEYRRAKKLTKGPEGKKPIVIAIEIIKGGTGKTTTAAEVAVQLQLQGLKVLGIDIDIQANFTQLMGYEADLTEDEAAMYGLTEEAIVNGTFATICGPFIERNGRPVDAKAIIKYPFGPSGPAIIPADTFFSDLEHDISKTGGKRELVFQKFFKESLAGNVPGLNVGDFDVVLFDCPPNISFVATNALASADIVIAPVKMESFSVKGLSRLIGEVHTLKAEYGGEVKDPELVILPTYYSTNLPRVGRMQEKLAQYRANTSPVSISQSEEFPKSTDNYMPLTVIKPTCQPVKEYRMFVDHLIKRINEVSKARAS
>NZ_AP021845.1|WP_152091270.1|309895_310324_-|hypothetical-protein
MNAFGRDGDSRQKEHSNVNYRSRDGRETQGSLSSATRVPVPRGHAPHPIFPPSWSIPTRKPQFTAVFHYCGFPEVAHTLANLETPGPEGAENFVQKKMAECGYMATVGRVKTRKAAFCLPMRLTNNTRAKIMREGNHKDEME
>NZ_AP021845.1|WP_152091271.1|310495_311095_+|hypothetical-protein
MSESTTPKRSRHSYRERIQEVIQERIALGKPLTHRDILKEAGGGSASTVVEELAKAERSTPATLIGRGAKSLPQRIAALEDALNASLAREKVLEAENQALRESLTSARADVDKLLAGHQDSQRMLLQGVDDLRQMVKAGQGGMASAVIATERQKAAGDDTGDGILWKARHDQLLQRFVALDAKNRKMSSQLHELGVDVD
>NZ_AP021845.1|WP_152091272.1|311091_312549_-|RepB-family-plasmid-replication-initiator-protein
MRQHQPEQRNLFPTEDLIVPESLQKMRKAVAAIHAIPRNPEDSQNLTNRRVFDGLIIVAQIHCRQRGKEFIQRIRDERVSPLFEVRTSELGKLSGIPGKNYDRIIEEISRIYEMDFEFNVCAEDGETIWENRARLLSSLGVGKNHKRGYIRFAMDPEMLILLLEPNLWASFSLSVMHDLGTSAAYALFQQTYRYINTNQKLTAALPTKTWIELLVGKNRYVKDIDGKEVINYGEFKRRVLNDAIEKVNEVPALTYNIELKEHRQGNRVARLQFKFIPKEPTLQLESTWPEDILTVLKSIGFLDKEITDISQAHSSASVADAICRLKEAEQRLKSEGKAISSRKPYFLGILRNIAAGEDDIDPEKIEAEVRIEMAERAAEERKKKMQDAYDEHRRKRFSAWVTSLSVEDRKQLIADYEASEDFNPVLGKSLKKILTEENRSGLSTLRVWMEKHRSETLAGVFNTPEYQSLEGWMMWKLSGDDAIEA
>NZ_AP021845.1|WP_152091273.1|313182_313680_+|hypothetical-protein
MMDDDEIKDRQLNALVGGAVRGLVESGADDEAIGAFASTYRQKAAKLLGRPQEALDPPDLTDIIKDAVAQALAAAQVKPKKSRKQNEHFTVSIGGQKTSVTIHKDVIAQLAEAKGSKAEVSRFVREVAKDVPDSVENKSEWIEHRIATIMRFKSESAGNGSSARH
>NZ_AP021845.1|WP_152091274.1|313676_314798_-|restriction-endonuclease
MFGPKKQTAAAKPNGVDNLIHKLKALPPAIDLIVAATLGGYSFVAIYVDNAKFVGLACILIALIFAVLGISAVTREMKDFKVVEQNSNPEALRMMKTQQFENYLVALFRLDGYQVRPSIDELHRQDDADLIAVKKKETILIQYNHWDEDIVGTKPIQSLHKAAAAVRAQGATAISFGRFSAEAADWARRKGVTLMTMQDVIGMACRLTGLTPEEAAAEPDEEVVVEKAHEVAEVVRGHHRFLFVDFAGLEHGLARLSELLLQHPAYQVIASTLPPLKSMEDIRLSLGECGDRLAGDLEAAQDGRYFAIQKHLQASREGKHAIWLAVDSEPRQFPEGCAELIAVNRAFGFDVSASQRLIEAMVIIDRRSIAGAG
>NZ_AP021845.1|WP_152091275.1|314875_315796_-|recombination-associated-protein-RdgC
MFFRNLTLYRLPTPWNMDLAKLEEMLARNPFTRCSGSEQQRSGWISPRDKGSLVYAQNRQWLIALCTEQRLLPSSVIQDEVRERAEALEEQQGYAPGRKQLRELKDRVAEELLPRAFTRRRTTFVWIDPVNGWLAVDASALSKAEEVLEQLRMVLDDFPLSLVHTKLSHSSAMADWLAGGEAPVNFTVDRDCELKAVGEEKAAVRYVRHPLDGDGIASEIKAHLAAGKLPTRLALTWNDRISFVLTERLEIKRLGFLDLLMEEAEKNTEHAEEKFDADFALMTGELARFIPSLLDALGGEVVEDRA
>NZ_AP021845.1|WP_152091276.1|315816_317793_-|DEAD/DEAH-box-helicase
MQPPPDNERNAVEQANGQPLLDRLKRLGVTAWREPLLCLPKLFQDYSSISTLKQALPQNDVVAGPKLFTLLVSEKAVVLSQPKKRLVMTATDGMLSVKIVIFVVLGVDVPTWKAFEEGDKIHLRGVLQNWNGKLQITGPTLIDPQLVGKVIPIYEKRRSVVADGAIYDATRYALEHHLKETIDYLVESYHGLPEADILRRARLKAPSVEVILRAAHQPTSEDEGMRGIAGMRRLAALSVVENARRLKQRDPVPESVVSIPDTLIQQLTEKLPYPLTGDQRRSIGEIVADMASPLPMRRVLSGDVGSGKTLPIMIAALATQHLGHRAVILTPNGLLADQFVKECKALFGEDSLVISVTSGTKKLDLASNPILVGTTALLSRLKGESPPALFCVDEEQKMSVSQKIELTGFASNYLQATATPIPRTTALITHGAMDVSVLKEMPVVKNITTHIVTAGERKRLFDHTRKVLASGGQIAIVYPIVNDDEQEKKSVVAAAVEWEKQFPGLVGMVHGQMKEAEKVAAVNGLKSGNQKIAVVSSVIEIGLTLPSLRSLIVVHAERYGTSTLHQLRGRVARLGGNGYFFLFLPETVAPETMQRLQLLVDHSDGFTLSEKDAELRGYGDLFEDAERQSGNSRSTIFRCVDLTPSEIHAATIHEALPS
>NZ_AP021845.1|WP_152091277.1|317776_318742_-|hypothetical-protein
MTTTNLATAKEVATAVASLGFQASSETLGAISRNCREDFLEHLSRCITDQDQDGRSKKFIGNLLRCLAPNTINRIKPIFPDATIDMIVPVAKAVPTRFLSAIDAAHDPKHARHEDAKAYLASIFAPPDTHSEEEPPQSSLQQQHDQQEERPVDQAALSRRLAPSGSKKYHSVHVYGSNAALCFNATDWNGAPGVMVDAAMQTGPKTYDWKNAVHVWLDINEVGAVLAVFRRWRKGVEFSAHGAQNDKGFAIEFQGQHFFAKVTAKKAAAGAVRAVKILPSDAMSVSILFLTQLAESYPMIPLNELLATVRATHQIEDAAAA

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_AP021845_1	1.1\|11367\|30\|NZ_AP021845\|CRISPRCasFinder	11367-11396	30	NZ_AP021845	Azospira sp. I09 plasmid pAZI09, complete sequence	11367-11396	0	1.0
NZ_AP021845_2	2.1\|11566\|30\|NZ_AP021845\|CRISPRCasFinder	11566-11595	30	NZ_AP021845	Azospira sp. I09 plasmid pAZI09, complete sequence	11566-11595	0	1.0
NZ_AP021845_2	2.2\|11632\|30\|NZ_AP021845\|CRISPRCasFinder	11632-11661	30	NZ_AP021845	Azospira sp. I09 plasmid pAZI09, complete sequence	11632-11661	0	1.0
NZ_AP021845_3	3.1\|12229\|30\|NZ_AP021845\|CRISPRCasFinder	12229-12258	30	NZ_AP021845	Azospira sp. I09 plasmid pAZI09, complete sequence	12229-12258	0	1.0
NZ_AP021845_4	4.1\|307483\|31\|NZ_AP021845\|PILER-CR	307483-307513	31	NZ_AP021845	Azospira sp. I09 plasmid pAZI09, complete sequence	307483-307513	0	1.0
NZ_AP021845_4	4.2\|307531\|43\|NZ_AP021845\|PILER-CR	307531-307573	43	NZ_AP021845	Azospira sp. I09 plasmid pAZI09, complete sequence	307531-307573	0	1.0
NZ_AP021845_4	4.3\|307591\|23\|NZ_AP021845\|PILER-CR	307591-307613	23	NZ_AP021845	Azospira sp. I09 plasmid pAZI09, complete sequence	307591-307613	0	1.0
NZ_AP021845_2	2.1\|11566\|30\|NZ_AP021845\|CRISPRCasFinder	11566-11595	30	NC_018141	Legionella pneumophila subsp. pneumophila plasmid pLELO, complete sequence	116661-116690	6	0.8
NZ_AP021845_2	2.1\|11566\|30\|NZ_AP021845\|CRISPRCasFinder	11566-11595	30	NZ_CP025492	Legionella sainthelensi strain LA01-117 plasmid pLA01-117_150k, complete sequence	38691-38720	6	0.8
NZ_AP021845_2	2.1\|11566\|30\|NZ_AP021845\|CRISPRCasFinder	11566-11595	30	NZ_CP021284	Legionella pneumophila subsp. pneumophila strain Allentown 1 (D-7475) plasmid unnamed1, complete sequence	109995-110024	6	0.8
NZ_AP021845_2	2.1\|11566\|30\|NZ_AP021845\|CRISPRCasFinder	11566-11595	30	NZ_CP011106	Legionella pneumophila strain L10-023 isolate Ulm plasmid unnamed, complete sequence	106875-106904	6	0.8
NZ_AP021845_2	2.1\|11566\|30\|NZ_AP021845\|CRISPRCasFinder	11566-11595	30	NZ_CP045305	Legionella longbeachae strain B1445CHC plasmid pB1445CHC_150k, complete sequence	37393-37422	6	0.8
NZ_AP021845_2	2.1\|11566\|30\|NZ_AP021845\|CRISPRCasFinder	11566-11595	30	NZ_CP042253	Legionella longbeachae strain B3526CHC plasmid pB3526CHC_150k, complete sequence	39581-39610	6	0.8
NZ_AP021845_2	2.2\|11632\|30\|NZ_AP021845\|CRISPRCasFinder	11632-11661	30	KM389300	UNVERIFIED: Escherichia phage CBA6 clone ctg7180000000096 genomic sequence	16175-16204	7	0.767
NZ_AP021845_2	2.2\|11632\|30\|NZ_AP021845\|CRISPRCasFinder	11632-11661	30	KC139562	Salmonella phage FSL SP-029 hypothetical protein gene, partial cds; hypothetical proteins, RIIA protector from prophage-induced early lysis, RIIB Protector from prophage-induced early lysis, and hypothetical proteins genes, complete cds; and DNA topoisomerase 2 gene, partial cds	2138-2167	7	0.767
NZ_AP021845_2	2.2\|11632\|30\|NZ_AP021845\|CRISPRCasFinder	11632-11661	30	KC139523	Salmonella phage FSL SP-063 hypothetical protein genes, complete cds; tRNA-Met, tRNA-Trp, tRNA-Asn, tRNA-OTHER, tRNA-Ser, and tRNA-OTHER genes, complete sequence; and hypothetical proteins, DNA polymerase, hypothetical proteins, RIIA protector from prophage-induced early lysis, RIIB Protector from prophage-induced early lysis, hypothetical proteins, putative tail fibre, hypothetical proteins, DNA topoisomerase IIs, hypothetical proteins, exonuclease A, hypothetical proteins, deoxycytidylate deaminase, hypothetical proteins, head completion protein, putative tail tube associated base plate protein, baseplate wedge subunit, hypothetical proteins, loader of T4-like helicase, hypothetical proteins, putative membrane protein, DNA ligase, hypothetical proteins, helicase, hypothetical protein, RecA-like recombination protein, hypothetical protein, putative dUTP diphosphatase, hypothetical protein, thymidylate synthase, hypothetical proteins, DNA end protector protein, baseplate tail tube, single-stranded DNA binding protein, hypothetical proteins, regulatory protein FmdB, hypothetical proteins, and base plate hub subunit genes, complete cds	20576-20605	7	0.767
NZ_AP021845_2	2.2\|11632\|30\|NZ_AP021845\|CRISPRCasFinder	11632-11661	30	FQ312032	Salmonella phage Vi01 complete sequence	154723-154752	7	0.767
NZ_AP021845_2	2.2\|11632\|30\|NZ_AP021845\|CRISPRCasFinder	11632-11661	30	NC_015296	Salmonella phage Vi01, complete genome	154723-154752	7	0.767
NZ_AP021845_2	2.2\|11632\|30\|NZ_AP021845\|CRISPRCasFinder	11632-11661	30	NC_023856	Salmonella phage vB_SalM_SJ2, complete genome	80074-80103	7	0.767
NZ_AP021845_2	2.2\|11632\|30\|NZ_AP021845\|CRISPRCasFinder	11632-11661	30	MH427377	Escherichia phage vB_EcoM Sa157lw, complete genome	129521-129550	7	0.767
NZ_AP021845_4	4.1\|307483\|31\|NZ_AP021845\|PILER-CR	307483-307513	31	NZ_CP012399	Chelatococcus sp. CO-6 plasmid pCO-6, complete sequence	220195-220225	7	0.774
NZ_AP021845_4	4.1\|307483\|31\|NZ_AP021845\|PILER-CR	307483-307513	31	NZ_CP018096	Chelatococcus daeguensis strain TAD1 plasmid pTAD1, complete sequence	197951-197981	7	0.774

1. spacer 1.1|11367|30|NZ_AP021845|CRISPRCasFinder matches to NZ_AP021845 (Azospira sp. I09 plasmid pAZI09, complete sequence) position: , mismatch: 0, identity: 1.0

atctcaacccgctctaggattcggctgact	CRISPR spacer
atctcaacccgctctaggattcggctgact	Protospacer
******************************

2. spacer 2.1|11566|30|NZ_AP021845|CRISPRCasFinder matches to NZ_AP021845 (Azospira sp. I09 plasmid pAZI09, complete sequence) position: , mismatch: 0, identity: 1.0

ctgatattgacaaggccttggcagttgtcg	CRISPR spacer
ctgatattgacaaggccttggcagttgtcg	Protospacer
******************************

3. spacer 2.2|11632|30|NZ_AP021845|CRISPRCasFinder matches to NZ_AP021845 (Azospira sp. I09 plasmid pAZI09, complete sequence) position: , mismatch: 0, identity: 1.0

gtcaggagtatcagccagacaatgaacttg	CRISPR spacer
gtcaggagtatcagccagacaatgaacttg	Protospacer
******************************

4. spacer 3.1|12229|30|NZ_AP021845|CRISPRCasFinder matches to NZ_AP021845 (Azospira sp. I09 plasmid pAZI09, complete sequence) position: , mismatch: 0, identity: 1.0

gaatatcggttctgcggtcgcagattggcc	CRISPR spacer
gaatatcggttctgcggtcgcagattggcc	Protospacer
******************************

5. spacer 4.1|307483|31|NZ_AP021845|PILER-CR matches to NZ_AP021845 (Azospira sp. I09 plasmid pAZI09, complete sequence) position: , mismatch: 0, identity: 1.0

aaacacgctgacggggagggaggcgcatggg	CRISPR spacer
aaacacgctgacggggagggaggcgcatggg	Protospacer
*******************************

6. spacer 4.2|307531|43|NZ_AP021845|PILER-CR matches to NZ_AP021845 (Azospira sp. I09 plasmid pAZI09, complete sequence) position: , mismatch: 0, identity: 1.0

ttgccgagcaccaaggggtgatgcgagaggagggctgtgcgga	CRISPR spacer
ttgccgagcaccaaggggtgatgcgagaggagggctgtgcgga	Protospacer
*******************************************

7. spacer 4.3|307591|23|NZ_AP021845|PILER-CR matches to NZ_AP021845 (Azospira sp. I09 plasmid pAZI09, complete sequence) position: , mismatch: 0, identity: 1.0

tcgctgacatccctggaatccga	CRISPR spacer
tcgctgacatccctggaatccga	Protospacer
***********************

8. spacer 2.1|11566|30|NZ_AP021845|CRISPRCasFinder matches to NC_018141 (Legionella pneumophila subsp. pneumophila plasmid pLELO, complete sequence) position: , mismatch: 6, identity: 0.8

ctgatattgacaaggccttgg--cagttgtcg	CRISPR spacer
gtgatattgacaaggccttagctcagttag--	Protospacer
 ******************.*  *****.

9. spacer 2.1|11566|30|NZ_AP021845|CRISPRCasFinder matches to NZ_CP025492 (Legionella sainthelensi strain LA01-117 plasmid pLA01-117_150k, complete sequence) position: , mismatch: 6, identity: 0.8

ctgatattgacaaggccttgg--cagttgtcg	CRISPR spacer
gtgatattgacaaggccttagctcagttag--	Protospacer
 ******************.*  *****.

10. spacer 2.1|11566|30|NZ_AP021845|CRISPRCasFinder matches to NZ_CP021284 (Legionella pneumophila subsp. pneumophila strain Allentown 1 (D-7475) plasmid unnamed1, complete sequence) position: , mismatch: 6, identity: 0.8

ctgatattgacaaggccttgg--cagttgtcg	CRISPR spacer
gtgatattgacaaggccttagctcagttag--	Protospacer
 ******************.*  *****.

11. spacer 2.1|11566|30|NZ_AP021845|CRISPRCasFinder matches to NZ_CP011106 (Legionella pneumophila strain L10-023 isolate Ulm plasmid unnamed, complete sequence) position: , mismatch: 6, identity: 0.8

ctgatattgacaaggccttgg--cagttgtcg	CRISPR spacer
gtgatattgacaaggccttagctcagttag--	Protospacer
 ******************.*  *****.

12. spacer 2.1|11566|30|NZ_AP021845|CRISPRCasFinder matches to NZ_CP045305 (Legionella longbeachae strain B1445CHC plasmid pB1445CHC_150k, complete sequence) position: , mismatch: 6, identity: 0.8

ctgatattgacaaggccttgg--cagttgtcg	CRISPR spacer
gtgatattgacaaggccttagctcagttag--	Protospacer
 ******************.*  *****.

13. spacer 2.1|11566|30|NZ_AP021845|CRISPRCasFinder matches to NZ_CP042253 (Legionella longbeachae strain B3526CHC plasmid pB3526CHC_150k, complete sequence) position: , mismatch: 6, identity: 0.8

ctgatattgacaaggccttgg--cagttgtcg	CRISPR spacer
gtgatattgacaaggccttagctcagttag--	Protospacer
 ******************.*  *****.

14. spacer 2.2|11632|30|NZ_AP021845|CRISPRCasFinder matches to KM389300 (UNVERIFIED: Escherichia phage CBA6 clone ctg7180000000096 genomic sequence) position: , mismatch: 7, identity: 0.767

gtcagga----gtatcagccagacaatgaacttg	CRISPR spacer
----gaattccgtatcagccagacaaagaaattg	Protospacer
    *.*    *************** *** ***

15. spacer 2.2|11632|30|NZ_AP021845|CRISPRCasFinder matches to KC139562 (Salmonella phage FSL SP-029 hypothetical protein gene, partial cds; hypothetical proteins, RIIA protector from prophage-induced early lysis, RIIB Protector from prophage-induced early lysis, and hypothetical proteins genes, complete cds; and DNA topoisomerase 2 gene, partial cds) position: , mismatch: 7, identity: 0.767

gtcagga----gtatcagccagacaatgaacttg	CRISPR spacer
----gaattccgtatcagccagacaaagaaattg	Protospacer
    *.*    *************** *** ***

16. spacer 2.2|11632|30|NZ_AP021845|CRISPRCasFinder matches to KC139523 (Salmonella phage FSL SP-063 hypothetical protein genes, complete cds; tRNA-Met, tRNA-Trp, tRNA-Asn, tRNA-OTHER, tRNA-Ser, and tRNA-OTHER genes, complete sequence; and hypothetical proteins, DNA polymerase, hypothetical proteins, RIIA protector from prophage-induced early lysis, RIIB Protector from prophage-induced early lysis, hypothetical proteins, putative tail fibre, hypothetical proteins, DNA topoisomerase IIs, hypothetical proteins, exonuclease A, hypothetical proteins, deoxycytidylate deaminase, hypothetical proteins, head completion protein, putative tail tube associated base plate protein, baseplate wedge subunit, hypothetical proteins, loader of T4-like helicase, hypothetical proteins, putative membrane protein, DNA ligase, hypothetical proteins, helicase, hypothetical protein, RecA-like recombination protein, hypothetical protein, putative dUTP diphosphatase, hypothetical protein, thymidylate synthase, hypothetical proteins, DNA end protector protein, baseplate tail tube, single-stranded DNA binding protein, hypothetical proteins, regulatory protein FmdB, hypothetical proteins, and base plate hub subunit genes, complete cds) position: , mismatch: 7, identity: 0.767

gtcagga----gtatcagccagacaatgaacttg	CRISPR spacer
----gaattccgtatcagccagacaaagaaattg	Protospacer
    *.*    *************** *** ***

17. spacer 2.2|11632|30|NZ_AP021845|CRISPRCasFinder matches to FQ312032 (Salmonella phage Vi01 complete sequence) position: , mismatch: 7, identity: 0.767

gtcagga----gtatcagccagacaatgaacttg	CRISPR spacer
----gaattccgtatcagccagacaaagaaattg	Protospacer
    *.*    *************** *** ***

18. spacer 2.2|11632|30|NZ_AP021845|CRISPRCasFinder matches to NC_015296 (Salmonella phage Vi01, complete genome) position: , mismatch: 7, identity: 0.767

gtcagga----gtatcagccagacaatgaacttg	CRISPR spacer
----gaattccgtatcagccagacaaagaaattg	Protospacer
    *.*    *************** *** ***

19. spacer 2.2|11632|30|NZ_AP021845|CRISPRCasFinder matches to NC_023856 (Salmonella phage vB_SalM_SJ2, complete genome) position: , mismatch: 7, identity: 0.767

gtcagga----gtatcagccagacaatgaacttg	CRISPR spacer
----gaattccgtatcagccagacaaagaaattg	Protospacer
    *.*    *************** *** ***

20. spacer 2.2|11632|30|NZ_AP021845|CRISPRCasFinder matches to MH427377 (Escherichia phage vB_EcoM Sa157lw, complete genome) position: , mismatch: 7, identity: 0.767

gtcagga----gtatcagccagacaatgaacttg	CRISPR spacer
----gaattccgtatcagccagacaaagaaattg	Protospacer
    *.*    *************** *** ***

21. spacer 4.1|307483|31|NZ_AP021845|PILER-CR matches to NZ_CP012399 (Chelatococcus sp. CO-6 plasmid pCO-6, complete sequence) position: , mismatch: 7, identity: 0.774

aaacacgctgacggggagggaggcgcatggg	CRISPR spacer
gatcgcgctgacgggacgggaggcgcatacg	Protospacer
.* *.**********. ***********. *

22. spacer 4.1|307483|31|NZ_AP021845|PILER-CR matches to NZ_CP018096 (Chelatococcus daeguensis strain TAD1 plasmid pTAD1, complete sequence) position: , mismatch: 7, identity: 0.774

aaacacgctgacggggagggaggcgcatggg	CRISPR spacer
gatcgcgctgacgggacgggaggcgcatacg	Protospacer
.* *.**********. ***********. *

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

72042 : 78469

Ruegeria_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_152090991.1\|72042_72375_-	DUF4031 domain-containing protein	A0A291LA06	Bordetella_phage	6.3e-26	59.8
WP_152090992.1\|72371_73094_-	hypothetical protein	NA	NA	NA	NA
WP_152090993.1\|73097_74831_-	ATP-dependent helicase	A0A1X9HX80	Ruegeria_phage	9.4e-121	44.6
WP_152090994.1\|74830_75211_-	hypothetical protein	A0A1X9HVL1	Ruegeria_phage	2.7e-12	40.4
WP_152090995.1\|75207_75648_-	hypothetical protein	A0A2H4IB20	Erwinia_phage	9.9e-11	33.6
WP_152090996.1\|75656_76244_-	hypothetical protein	NA	NA	NA	NA
WP_152090997.1\|76240_76504_-	hypothetical protein	J7I0T4	Pseudomonas_phage	1.5e-06	43.5
WP_152090998.1\|76500_76989_-	hypothetical protein	NA	NA	NA	NA
WP_152090999.1\|76985_78104_-	hypothetical protein	NA	NA	NA	NA
WP_152091000.1\|78175_78469_-	hypothetical protein	Q6V7R0	Burkholderia_virus	5.0e-27	58.3

DBSCAN-SWA_2

219800 : 230598

Mycobacterium_phage(22.22%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_152091180.1\|219800_220412_-	hypothetical protein	A0A1B2LRT6	Wolbachia_phage	1.4e-15	29.9
WP_152091181.1\|220457_221594_-	phosphoadenosine phosphosulfate reductase family protein	NA	NA	NA	NA
WP_172974840.1\|221724_222702_-	hypothetical protein	A0A0A0RRM5	Mycobacterium_phage	1.4e-09	28.4
WP_152091182.1\|222752_223025_-	hypothetical protein	A0A2P1CEV8	Mycobacterium_phage	9.2e-07	50.0
WP_152091183.1\|223036_224014_-	thymidylate synthase	A0A1S6KUW9	Providencia_phage	8.3e-42	33.7
WP_152091184.1\|224122_226084_-	DNA cytosine methyltransferase	Q5QF27	Pseudomonas_virus	6.1e-161	45.1
WP_152091185.1\|226211_226538_-	DUF4326 domain-containing protein	A0A142KAL3	Gordonia_phage	6.6e-20	47.1
WP_152091186.1\|226543_227677_-	DUF5131 family protein	A0A291AUR0	Sinorhizobium_phage	2.7e-92	46.3
WP_152091187.1\|227669_227975_-	hypothetical protein	NA	NA	NA	NA
WP_152091188.1\|227967_228459_-	hypothetical protein	NA	NA	NA	NA
WP_152091189.1\|228471_228939_-	hypothetical protein	A9YX19	Burkholderia_phage	8.9e-26	50.4
WP_152091190.1\|229269_229710_-	hypothetical protein	NA	NA	NA	NA
WP_152091191.1\|229974_230598_-	hypothetical protein	R9TMR2	Vibrio_phage	1.4e-34	39.5

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_AP021844

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NZ_AP021845

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection