CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number
NZ_CP044966	Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS014881 plasmid pPNCS014881.5, complete sequence	0 crisprs	NA	0	0	0
NZ_CP044962	Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS014881 plasmid pPNCS014881.1, complete sequence	0 crisprs	DEDDh	0	0	1
NZ_CP044963	Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS014881 plasmid pPNCS014881.2, complete sequence	0 crisprs	NA	0	0	0
NZ_CP044965	Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS014881 plasmid pPNCS014881.4, complete sequence	0 crisprs	NA	0	0	0
NZ_CP044964	Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS014881 plasmid pPNCS014881.3, complete sequence	0 crisprs	NA	0	0	0
NZ_CP044961	Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS014881 chromosome, complete genome	2 crisprs	WYL,DinG,cas3,DEDDh,cas14j,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,PD-DExK,RT	1	36	13

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

18822 : 48548

Escherichia_phage(60.0%)

transposase

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001067855.1\|18822_19527_-\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
WP_001067855.1\|20077_20782_+\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
WP_001550559.1\|20815_21307_-	hypothetical protein	NA	NA	NA	NA
WP_000743213.1\|22141_22366_+	hypothetical protein	NA	NA	NA	NA
WP_001120888.1\|22576_24070_+\|transposase	IS91 family transposase	NA	NA	NA	NA
WP_001447541.1\|24100_24985_+	DUF3363 domain-containing protein	NA	NA	NA	NA
WP_094304302.1\|25201_26416_+	chloramphenicol/florfenicol efflux MFS transporter FloR	S4TR35	Salmonella_phage	3.2e-19	28.7
WP_001067858.1\|27454_28159_+\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.2e-138	99.6
WP_001617865.1\|28735_29611_-	class A extended-spectrum beta-lactamase CTX-M-14	A0A1B0VBP7	Salmonella_phage	6.1e-153	99.6
WP_000608644.1\|29860_31123_-\|transposase	IS1380-like element ISEc9 family transposase	A0A1B0VDR3	Salmonella_phage	1.3e-39	100.0
WP_001516695.1\|35382_36039_+	quinolone resistance pentapeptide repeat protein QnrS1	NA	NA	NA	NA
WP_001493761.1\|36818_38210_-\|transposase	ISKra4-like element ISKpn19 family transposase	NA	NA	NA	NA
WP_001493762.1\|38246_38819_-	recombinase family protein	M9Q1K0	Clostridium_phage	3.4e-19	39.4
WP_012477564.1\|38955_39546_-	plasmid pRiA4b ORF-3 family protein	NA	NA	NA	NA
WP_000219391.1\|40630_41536_-	Mph(A) family macrolide 2'-phosphotransferase	NA	NA	NA	NA
WP_001067855.1\|41657_42362_-\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
WP_001067855.1\|44890_45595_+\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
WP_000587837.1\|45737_46280_-	AAA family ATPase	NA	NA	NA	NA
WP_000557454.1\|46292_47153_-	aminoglycoside N-acetyltransferase AAC(3)-IId	NA	NA	NA	NA
WP_001067858.1\|47843_48548_-\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.2e-138	99.6

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_CP044961

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP044961_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP044961_1

3071503-3073466

TypeI-E

I-E

Consensus_repeat	Method
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CRISPRCasFinder
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CRT
GGTTTATCCCCGCTGGCGCGGGGAACAC	PILER-CR
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CRT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CRISPRCasFinder
CGGTTTATCCCCGCTGGCGCGGGGAACAC	PILER-CR

32 spacers

cas2,cas1,cas6e,cas5,cas7,cse2gr11

The CRISPR arrays of NZ_CP044961_1

>merge|NZ_CP044961|1|3071503-3073466|CRISPRCasFinder,CRT,PILER-CR,CRT,CRISPRCasFinder,PILER-CR
GTGTTTATCCCCGCTGGCGCGGGGAACATTTTTCAGCCCTTGTCGACTGCGGAACGCCCCTCGGTTTATCCCCGCTGGCGCGGGGAACACGCGAAATAGTGGGGAAAAACCCCTGGTTAACCCGGTTTATCCCCGCTGGCGCGGGAAACACTAGGCCTTGATACCATCGCTCGCACCTCGTCACGGTTTATCCCCGCTGGCGCGGGGAACACGTTTATTACTGCTTAGTTAATTAATGGGTTGCCGGTTTATCCCCGCTGGCGCGGGGAACACAGGCGAATAATCTCTAATAGTCTCAATTCGTTCGGTTTATCCCCGCTGGCGCGGGGAACACTAAATCTGGCGTCGAGACATTCGAAATAGTGCCGGTTTATCCCCGCTGGCGCGGGGAACACTCTTTTGATTTTGCTGCGATGTTATAACCAGACGGTTTATCCCCGCTGGCGCGGGGAACACTATCCACATATACCCGCAATCATATTCAAGAACGGTTTATCCCCGCTGGCGCGGGGAACACAATCACTGCGGGGGTATTTAGCGGAAACGGCTCGGTTTATCCCCGCTGGCGCGGGGAACACGATCGAGTAACGTGCGCTGGAACGCGTCGGCGCGGGGAACACAATTAAAGCCGAGGGTGGCACCGCGCCTTATTCGGTTTATCCCCGCTGGCGCGGGGAACACGCACCTCGAAACGGTTTTAAAACACTACCGTTTCGGTTTATCCCCGCTGGCGCGGGGAACACTGGACCGATGGGGCCAACATCGCCGAACGTGGCGGTTTATCCCCGCTGGCGCGGGGAACACGTTACGTTCGGTAAATGGAAAGCGGCGAATATCGGTTTATCCCCGCTGGCGCGGGGAACACCCAGAAAGTGCCGGTAGTGCCTGATGAACGACCGGTTTATCCCCGCTGGCGCGGGGAACACCGCGCCCACTTCCGTAAAATACAGATAATCCACGGTTTATCCCCGCTGGCGCGGGGAACACGGCAGCGGGCGAGGCAAACACATTCGGGGCGTCGGTTTATCCCCGCTGGCGCGGGGAACACGGCAGCGGGCGAGGCAAACACATTCGGGGCGTCGGTTTATCCCCGCTGGCGCGGGGAACACGGTAATTTCTCATCTAACAGCCTGTACGCCTCAGGTTTATCCCCGCTGGCGCGGGGAACACGAATCTAATGCAACAGATGAATAAACACGTAACGGTTTATCCCCGCTGGCGCGGGGAACACTCTTTATCGTCAATGCGAAATTTTCCGCGACGCGGTTTATCCCCGCTGGCGCGGGGAACACTCCCATTCACCAACAACAATATCGCCCTGCAACGGTTTATCCCCGCTGGCGCGGGGAACACCGTTGCGTCAGGTTGATCCAGTGCGTCAGCGGCGGTTTATCCCCGCTGGCGCGGGGAACACTCTCGGTCTCGGTCTCGGTCTCGGTAGTGACGCGGTTTATCCCCGCTGGCGCGGGGAACACACTTCCTTCAGTCTTAACGATAATCCGCAACGCGGTTTATCCCCGCTGGCGCGGGGAACACGCAAAATAGCGATGAGCTGGCTACGCCCACTGGCGGTTTATCCCCGCTGGCGCGGGGAACACAGCCGGCGCGAGCCTGGAGGGTTGAATAATGGCGGTTTATCCCCGCTGGCGCGGGGAACACCAATCTCGCATTCGTTACCCCACCTGCATTTTCGGTTTATCCCCGCTGGCGCGGGGAACACGAGGGGATAGGAGTTACGATCCAGCCTGGTTGCGGTTTATCCCCGCTGGCGCGGGGAACACGTGGTTGCAGACCAATCAGCCCGCCAGCGGTTCGGTTTATCCCCGCTGGCGCGGGGAACACCAGCACGAAAAATTATTTACTGTCGTTGCTCACGGTTTATCCCCGCTGGCGCGGGGAACACTGTAACAGTCCGTCGTTAATCAGCGCGGTGGGAGGTTTATCCCCGCTGGCGCGGGGAACAC

>NZ_CP044961|1|1|3071503-3072081|CRISPRCasFinder
GTGTTTATCCCCGCTGGCGCGGGGAACAT	TTTTCAGCCCTTGTCGACTGCGGAACGCCCCT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GCGAAATAGTGGGGAAAAACCCCTGGTTAACC
CGGTTTATCCCCGCTGGCGCGGGAAACAC	TAGGCCTTGATACCATCGCTCGCACCTCGTCA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GTTTATTACTGCTTAGTTAATTAATGGGTTGC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	AGGCGAATAATCTCTAATAGTCTCAATTCGTT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TAAATCTGGCGTCGAGACATTCGAAATAGTGC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TCTTTTGATTTTGCTGCGATGTTATAACCAGA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TATCCACATATACCCGCAATCATATTCAAGAA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	AATCACTGCGGGGGTATTTAGCGGAAACGGCT
CGGTTTATCCCCGCTGGCGCGGGGAACACGATCGAGTAACGTGCGCTGGAACGCGTCGGCGCGGGGAACACAATTAAAGCCGAGGGTGGCACCGCGCCTTATTCGGTTTATCCCCGCTGGCGCGGGGAACAC	GCACCTCGAAACGGTTTTAAAACACTACCGTTT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TGGACCGATGGGGCCAACATCGCCGAACGTGG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GTTACGTTCGGTAAATGGAAAGCGGCGAATAT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CCAGAAAGTGCCGGTAGTGCCTGATGAACGAC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CGCGCCCACTTCCGTAAAATACAGATAATCCA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GGCAGCGGGCGAGGCAAACACATTCGGGGCGT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GGCAGCGGGCGAGGCAAACACATTCGGGGCGT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GGTAATTTCTCATCTAACAGCCTGTACGCCTC
AGGTTTATCCCCGCTGGCGCGGGGAACAC	GAATCTAATGCAACAGATGAATAAACACGTAA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TCTTTATCGTCAATGCGAAATTTTCCGCGACG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TCCCATTCACCAACAACAATATCGCCCTGCAA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CGTTGCGTCAGGTTGATCCAGTGCGTCAGCGG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TCTCGGTCTCGGTCTCGGTCTCGGTAGTGACG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	ACTTCCTTCAGTCTTAACGATAATCCGCAACG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GCAAAATAGCGATGAGCTGGCTACGCCCACTGG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	AGCCGGCGCGAGCCTGGAGGGTTGAATAATGG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CAATCTCGCATTCGTTACCCCACCTGCATTTT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GAGGGGATAGGAGTTACGATCCAGCCTGGTTG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GTGGTTGCAGACCAATCAGCCCGCCAGCGGTT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CAGCACGAAAAATTATTTACTGTCGTTGCTCA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TGTAACAGTCCGTCGTTAATCAGCGCGGTGGG


>NZ_CP044961|1|1|3071503-3072080|CRT
GTGTTTATCCCCGCTGGCGCGGGGAACAT	TTTTCAGCCCTTGTCGACTGCGGAACGCCCCT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GCGAAATAGTGGGGAAAAACCCCTGGTTAACC
CGGTTTATCCCCGCTGGCGCGGGAAACAC	TAGGCCTTGATACCATCGCTCGCACCTCGTCA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GTTTATTACTGCTTAGTTAATTAATGGGTTGC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	AGGCGAATAATCTCTAATAGTCTCAATTCGTT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TAAATCTGGCGTCGAGACATTCGAAATAGTGC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TCTTTTGATTTTGCTGCGATGTTATAACCAGA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TATCCACATATACCCGCAATCATATTCAAGAA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	AATCACTGCGGGGGTATTTAGCGGAAACGGCT
CGGTTTATCCCCGCTGGCGCGGGGAACACGATCGAGTAACGTGCGCTGGAACGCGTCGGCGCGGGGAACAC	AATTAAAGCCGAGGGTGGCACCGCGCCTTATT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GCACCTCGAAACGGTTTTAAAACACTACCGTTT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TGGACCGATGGGGCCAACATCGCCGAACGTGG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GTTACGTTCGGTAAATGGAAAGCGGCGAATAT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CCAGAAAGTGCCGGTAGTGCCTGATGAACGAC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CGCGCCCACTTCCGTAAAATACAGATAATCCA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GGCAGCGGGCGAGGCAAACACATTCGGGGCGT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GGCAGCGGGCGAGGCAAACACATTCGGGGCGT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GGTAATTTCTCATCTAACAGCCTGTACGCCTC
AGGTTTATCCCCGCTGGCGCGGGGAACAC	GAATCTAATGCAACAGATGAATAAACACGTAA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TCTTTATCGTCAATGCGAAATTTTCCGCGACG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TCCCATTCACCAACAACAATATCGCCCTGCAA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CGTTGCGTCAGGTTGATCCAGTGCGTCAGCGG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TCTCGGTCTCGGTCTCGGTCTCGGTAGTGACG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	ACTTCCTTCAGTCTTAACGATAATCCGCAACG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GCAAAATAGCGATGAGCTGGCTACGCCCACTGG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	AGCCGGCGCGAGCCTGGAGGGTTGAATAATGG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CAATCTCGCATTCGTTACCCCACCTGCATTTT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GAGGGGATAGGAGTTACGATCCAGCCTGGTTG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GTGGTTGCAGACCAATCAGCCCGCCAGCGGTT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CAGCACGAAAAATTATTTACTGTCGTTGCTCA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TGTAACAGTCCGTCGTTAATCAGCGCGGTGGG


>NZ_CP044961|1|1|3071505-3073466|PILER-CR
GTTTATCCCCGCTGGCGCGGGGAACATT	TTTCAGCCCTTGTCGACTGCGGAACGCCCCTCG
GTTTATCCCCGCTGGCGCGGGGAACACG	CGAAATAGTGGGGAAAAACCCCTGGTTAACCCG
GTTTATCCCCGCTGGCGCGGGAAACACT	AGGCCTTGATACCATCGCTCGCACCTCGTCACG
GTTTATCCCCGCTGGCGCGGGGAACACG	TTTATTACTGCTTAGTTAATTAATGGGTTGCCG
GTTTATCCCCGCTGGCGCGGGGAACACA	GGCGAATAATCTCTAATAGTCTCAATTCGTTCG
GTTTATCCCCGCTGGCGCGGGGAACACT	AAATCTGGCGTCGAGACATTCGAAATAGTGCCG
GTTTATCCCCGCTGGCGCGGGGAACACT	CTTTTGATTTTGCTGCGATGTTATAACCAGACG
GTTTATCCCCGCTGGCGCGGGGAACACT	ATCCACATATACCCGCAATCATATTCAAGAACG
GTTTATCCCCGCTGGCGCGGGGAACACA	ATCACTGCGGGGGTATTTAGCGGAAACGGCTCG
GTTTATCCCCGCTGGCGCGGGGAACACG	ATCGAGTAACGTGCGCTGGAACGCGTCG
GCGCGGGGAACACAATTAAAGCCGAGGG	TGGCACCGCGCCTTATTCGGTTTATCCCCGCTG
GCGCGGGGAACACGCACCTCGAAACGGT	TTTAAAACACTACCGTTTCGGTTTATCCCCGCTG
GCGCGGGGAACACTGGACCGATGGGGCC	AACATCGCCGAACGTGGCGGTTTATCCCCGCTG
GCGCGGGGAACACGTTACGTTCGGTAAA	TGGAAAGCGGCGAATATCGGTTTATCCCCGCTG
GCGCGGGGAACACCCAGAAAGTGCCGGT	AGTGCCTGATGAACGACCGGTTTATCCCCGCTG
GCGCGGGGAACACCGCGCCCACTTCCGT	AAAATACAGATAATCCACGGTTTATCCCCGCTG
GCGCGGGGAACACGGCAGCGGGCGAGGC	AAACACATTCGGGGCGTCGGTTTATCCCCGCTG
GCGCGGGGAACACGGCAGCGGGCGAGGC	AAACACATTCGGGGCGTCGGTTTATCCCCGCTG
GCGCGGGGAACACGGTAATTTCTCATCT	AACAGCCTGTACGCCTCAGGTTTATCCCCGCTG
GCGCGGGGAACACGAATCTAATGCAACA	GATGAATAAACACGTAACGGTTTATCCCCGCTG
GCGCGGGGAACACTCTTTATCGTCAATG	CGAAATTTTCCGCGACGCGGTTTATCCCCGCTG
GCGCGGGGAACACTCCCATTCACCAACA	ACAATATCGCCCTGCAACGGTTTATCCCCGCTG
GCGCGGGGAACACCGTTGCGTCAGGTTG	ATCCAGTGCGTCAGCGGCGGTTTATCCCCGCTG
GCGCGGGGAACACTCTCGGTCTCGGTCT	CGGTCTCGGTAGTGACGCGGTTTATCCCCGCTG
GCGCGGGGAACACACTTCCTTCAGTCTT	AACGATAATCCGCAACGCGGTTTATCCCCGCTGGCGCGGGGAACACGCAAAATAGCGATGAGCTGGCTACGCCCACTGGCGGTTTATCCCCGCTGGCGCGGGGAACACAGCCGGCGCGAGCCTGGAGGGTTGAATAATGGCGGTTTATCCCCGCTGGCGCGGGGAACACCAATCTCGCATTCGTTACCCCACCTGCATTTTCGGTTTATCCCCGCTGGCGCGGGGAACACGAGGGGATAGGAGTTACGATCCAGCCTGGTTGCGGTTTATCCCCGCTGGCGCGGGGAACACGTGGTTGCAGACCAATCAGCCCGCCAGCGGTTCGGTTTATCCCCGCTGGCGCGGGGAACACCAGCACGAAAAATTATTTACTGTCGTTGCTCACGGTTTATCCCCGCTGGCGCGGGGAACACTGTAACAGTCCGTCGTTAATCAGCGCGGTGGGAGGTTTATCCCCGCTG
	GCAAAATAGCGATGAGCTGGCTACGCCCACTGG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	AGCCGGCGCGAGCCTGGAGGGTTGAATAATGG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CAATCTCGCATTCGTTACCCCACCTGCATTTT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GAGGGGATAGGAGTTACGATCCAGCCTGGTTG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GTGGTTGCAGACCAATCAGCCCGCCAGCGGTT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CAGCACGAAAAATTATTTACTGTCGTTGCTCA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TGTAACAGTCCGTCGTTAATCAGCGCGGTGGG
AGGTTTATCCCCGCTGGCGCGGGGAACAC

>NZ_CP044961|1|2|3072094-3073466|CRT
	TTTTCAGCCCTTGTCGACTGCGGAACGCCCCT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GCGAAATAGTGGGGAAAAACCCCTGGTTAACC
CGGTTTATCCCCGCTGGCGCGGGAAACAC	TAGGCCTTGATACCATCGCTCGCACCTCGTCA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GTTTATTACTGCTTAGTTAATTAATGGGTTGC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	AGGCGAATAATCTCTAATAGTCTCAATTCGTT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TAAATCTGGCGTCGAGACATTCGAAATAGTGC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TCTTTTGATTTTGCTGCGATGTTATAACCAGA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TATCCACATATACCCGCAATCATATTCAAGAA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	AATCACTGCGGGGGTATTTAGCGGAAACGGCT
CGGTTTATCCCCGCTGGCGCGGGGAACACGATCGAGTAACGTGCGCTGGAACGCGTCGGCGCGGGGAACAC	AATTAAAGCCGAGGGTGGCACCGCGCCTTATT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GCACCTCGAAACGGTTTTAAAACACTACCGTTT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TGGACCGATGGGGCCAACATCGCCGAACGTGG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GTTACGTTCGGTAAATGGAAAGCGGCGAATAT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CCAGAAAGTGCCGGTAGTGCCTGATGAACGAC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CGCGCCCACTTCCGTAAAATACAGATAATCCA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GGCAGCGGGCGAGGCAAACACATTCGGGGCGT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GGCAGCGGGCGAGGCAAACACATTCGGGGCGT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GGTAATTTCTCATCTAACAGCCTGTACGCCTC
AGGTTTATCCCCGCTGGCGCGGGGAACAC	GAATCTAATGCAACAGATGAATAAACACGTAA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TCTTTATCGTCAATGCGAAATTTTCCGCGACG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TCCCATTCACCAACAACAATATCGCCCTGCAA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CGTTGCGTCAGGTTGATCCAGTGCGTCAGCGG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TCTCGGTCTCGGTCTCGGTCTCGGTAGTGACG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	ACTTCCTTCAGTCTTAACGATAATCCGCAACG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GCAAAATAGCGATGAGCTGGCTACGCCCACTGG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	AGCCGGCGCGAGCCTGGAGGGTTGAATAATGG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CAATCTCGCATTCGTTACCCCACCTGCATTTT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GAGGGGATAGGAGTTACGATCCAGCCTGGTTG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GTGGTTGCAGACCAATCAGCCCGCCAGCGGTT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CAGCACGAAAAATTATTTACTGTCGTTGCTCA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TGTAACAGTCCGTCGTTAATCAGCGCGGTGGG
AGGTTTATCCCCGCTGGCGCGGGGAACAC

>NZ_CP044961|1|2|3072155-3073466|CRISPRCasFinder
	TTTTCAGCCCTTGTCGACTGCGGAACGCCCCT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GCGAAATAGTGGGGAAAAACCCCTGGTTAACC
CGGTTTATCCCCGCTGGCGCGGGAAACAC	TAGGCCTTGATACCATCGCTCGCACCTCGTCA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GTTTATTACTGCTTAGTTAATTAATGGGTTGC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	AGGCGAATAATCTCTAATAGTCTCAATTCGTT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TAAATCTGGCGTCGAGACATTCGAAATAGTGC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TCTTTTGATTTTGCTGCGATGTTATAACCAGA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TATCCACATATACCCGCAATCATATTCAAGAA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	AATCACTGCGGGGGTATTTAGCGGAAACGGCT
CGGTTTATCCCCGCTGGCGCGGGGAACACGATCGAGTAACGTGCGCTGGAACGCGTCGGCGCGGGGAACACAATTAAAGCCGAGGGTGGCACCGCGCCTTATTCGGTTTATCCCCGCTGGCGCGGGGAACAC	GCACCTCGAAACGGTTTTAAAACACTACCGTTT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TGGACCGATGGGGCCAACATCGCCGAACGTGG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GTTACGTTCGGTAAATGGAAAGCGGCGAATAT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CCAGAAAGTGCCGGTAGTGCCTGATGAACGAC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CGCGCCCACTTCCGTAAAATACAGATAATCCA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GGCAGCGGGCGAGGCAAACACATTCGGGGCGT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GGCAGCGGGCGAGGCAAACACATTCGGGGCGT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GGTAATTTCTCATCTAACAGCCTGTACGCCTC
AGGTTTATCCCCGCTGGCGCGGGGAACAC	GAATCTAATGCAACAGATGAATAAACACGTAA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TCTTTATCGTCAATGCGAAATTTTCCGCGACG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TCCCATTCACCAACAACAATATCGCCCTGCAA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CGTTGCGTCAGGTTGATCCAGTGCGTCAGCGG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TCTCGGTCTCGGTCTCGGTCTCGGTAGTGACG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	ACTTCCTTCAGTCTTAACGATAATCCGCAACG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GCAAAATAGCGATGAGCTGGCTACGCCCACTGG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	AGCCGGCGCGAGCCTGGAGGGTTGAATAATGG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CAATCTCGCATTCGTTACCCCACCTGCATTTT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GAGGGGATAGGAGTTACGATCCAGCCTGGTTG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GTGGTTGCAGACCAATCAGCCCGCCAGCGGTT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CAGCACGAAAAATTATTTACTGTCGTTGCTCA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TGTAACAGTCCGTCGTTAATCAGCGCGGTGGG
AGGTTTATCCCCGCTGGCGCGGGGAACAC

>NZ_CP044961|1|2|3073010-3073466|PILER-CR
	TTTCAGCCCTTGTCGACTGCGGAACGCCCCTCG
GTTTATCCCCGCTGGCGCGGGGAACACG	CGAAATAGTGGGGAAAAACCCCTGGTTAACCCG
GTTTATCCCCGCTGGCGCGGGAAACACT	AGGCCTTGATACCATCGCTCGCACCTCGTCACG
GTTTATCCCCGCTGGCGCGGGGAACACG	TTTATTACTGCTTAGTTAATTAATGGGTTGCCG
GTTTATCCCCGCTGGCGCGGGGAACACA	GGCGAATAATCTCTAATAGTCTCAATTCGTTCG
GTTTATCCCCGCTGGCGCGGGGAACACT	AAATCTGGCGTCGAGACATTCGAAATAGTGCCG
GTTTATCCCCGCTGGCGCGGGGAACACT	CTTTTGATTTTGCTGCGATGTTATAACCAGACG
GTTTATCCCCGCTGGCGCGGGGAACACT	ATCCACATATACCCGCAATCATATTCAAGAACG
GTTTATCCCCGCTGGCGCGGGGAACACA	ATCACTGCGGGGGTATTTAGCGGAAACGGCTCG
GTTTATCCCCGCTGGCGCGGGGAACACG	ATCGAGTAACGTGCGCTGGAACGCGTCG
GCGCGGGGAACACAATTAAAGCCGAGGG	TGGCACCGCGCCTTATTCGGTTTATCCCCGCTG
GCGCGGGGAACACGCACCTCGAAACGGT	TTTAAAACACTACCGTTTCGGTTTATCCCCGCTG
GCGCGGGGAACACTGGACCGATGGGGCC	AACATCGCCGAACGTGGCGGTTTATCCCCGCTG
GCGCGGGGAACACGTTACGTTCGGTAAA	TGGAAAGCGGCGAATATCGGTTTATCCCCGCTG
GCGCGGGGAACACCCAGAAAGTGCCGGT	AGTGCCTGATGAACGACCGGTTTATCCCCGCTG
GCGCGGGGAACACCGCGCCCACTTCCGT	AAAATACAGATAATCCACGGTTTATCCCCGCTG
GCGCGGGGAACACGGCAGCGGGCGAGGC	AAACACATTCGGGGCGTCGGTTTATCCCCGCTG
GCGCGGGGAACACGGCAGCGGGCGAGGC	AAACACATTCGGGGCGTCGGTTTATCCCCGCTG
GCGCGGGGAACACGGTAATTTCTCATCT	AACAGCCTGTACGCCTCAGGTTTATCCCCGCTG
GCGCGGGGAACACGAATCTAATGCAACA	GATGAATAAACACGTAACGGTTTATCCCCGCTG
GCGCGGGGAACACTCTTTATCGTCAATG	CGAAATTTTCCGCGACGCGGTTTATCCCCGCTG
GCGCGGGGAACACTCCCATTCACCAACA	ACAATATCGCCCTGCAACGGTTTATCCCCGCTG
GCGCGGGGAACACCGTTGCGTCAGGTTG	ATCCAGTGCGTCAGCGGCGGTTTATCCCCGCTG
GCGCGGGGAACACTCTCGGTCTCGGTCT	CGGTCTCGGTAGTGACGCGGTTTATCCCCGCTG
GCGCGGGGAACACACTTCCTTCAGTCTT	AACGATAATCCGCAACGCGGTTTATCCCCGCTGGCGCGGGGAACACGCAAAATAGCGATGAGCTGGCTACGCCCACTGGCGGTTTATCCCCGCTGGCGCGGGGAACACAGCCGGCGCGAGCCTGGAGGGTTGAATAATGGCGGTTTATCCCCGCTGGCGCGGGGAACACCAATCTCGCATTCGTTACCCCACCTGCATTTTCGGTTTATCCCCGCTGGCGCGGGGAACACGAGGGGATAGGAGTTACGATCCAGCCTGGTTGCGGTTTATCCCCGCTGGCGCGGGGAACACGTGGTTGCAGACCAATCAGCCCGCCAGCGGTTCGGTTTATCCCCGCTGGCGCGGGGAACACCAGCACGAAAAATTATTTACTGTCGTTGCTCACGGTTTATCCCCGCTGGCGCGGGGAACACTGTAACAGTCCGTCGTTAATCAGCGCGGTGGGAGGTTTATCCCCGCTG
	GCAAAATAGCGATGAGCTGGCTACGCCCACTGG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	AGCCGGCGCGAGCCTGGAGGGTTGAATAATGG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CAATCTCGCATTCGTTACCCCACCTGCATTTT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GAGGGGATAGGAGTTACGATCCAGCCTGGTTG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GTGGTTGCAGACCAATCAGCCCGCCAGCGGTT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CAGCACGAAAAATTATTTACTGTCGTTGCTCA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TGTAACAGTCCGTCGTTAATCAGCGCGGTGGG
AGGTTTATCCCCGCTGGCGCGGGGAACAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP044961.1\|WP_000741650.1\|3065636_3066347_-\|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	unknown	unknown	gnl\|CDD\|234670
NZ_CP044961.1\|WP_000206415.1\|3076161_3077220_-\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	cas7	pfam09344_cas7_CAS-I-E	gnl\|CDD\|273843
NZ_CP044961.1\|WP_000372384.1\|3069282_3070191_-\|sulfate-adenylyltransferase-subunit-CysD	unknown	unknown	gnl\|CDD\|235375
NZ_CP044961.1\|WP_001118109.1\|3066867_3067224_-\|DUF3561-family-protein	unknown	unknown	gnl\|CDD\|371891
NZ_CP044961.1\|WP_000134246.1\|3064111_3065161_-\|tRNA-pseudouridine(13)-synthase-TruD	unknown	unknown	gnl\|CDD\|234884
NZ_CP044961.1\|WP_000210927.1\|3086028_3087828_-\|NADPH-dependent-assimilatory-sulfite-reductase-flavoprotein-subunit	unknown	unknown	gnl\|CDD\|182862
NZ_CP044961.1\|WP_000080404.1\|3083506_3084241_-\|phosphoadenosine-phosphosulfate-reductase	unknown	unknown	gnl\|CDD\|234997
NZ_CP044961.1\|WP_001221538.1\|3063369_3064131_-\|5'/3'-nucleotidase-SurE	unknown	unknown	gnl\|CDD\|234732
NZ_CP044961.1\|WP_000490481.1\|3070441_3071488_+\|aminopeptidase	unknown	unknown	gnl\|CDD\|182299
NZ_CP044961.1\|WP_001518648.1\|3073562_3073856_-\|type-I-E-CRISPR-associated-endoribonuclease-Cas2	cas2	cd09648_cas2_CAS-I-E	gnl\|CDD\|236930
NZ_CP044961.1\|WP_001173663.1\|3067241_3067847_-\|adenylyl-sulfate-kinase	unknown	unknown	gnl\|CDD\|179661
NZ_CP044961.1\|WP_001145543.1\|3082465_3083419_+\|SPI-1-type-III-secretion-system-effector-SopD	unknown	unknown	gnl\|CDD\|185277
NZ_CP044961.1\|WP_001290660.1\|3084316_3086029_-\|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit	unknown	unknown	gnl\|CDD\|237402
NZ_CP044961.1\|WP_000517480.1\|3066365_3066677_-\|cell-division-protein-FtsB	unknown	unknown	gnl\|CDD\|179156
NZ_CP044961.1\|WP_000281486.1\|3074772_3075423_-\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	cas6e	cd09664_cas6e_CAS-I-E	gnl\|CDD\|273869
NZ_CP044961.1\|WP_000085114.1\|3075404_3076151_-\|type-I-E-CRISPR-associated-protein-Cas5/CasD	cas5	cd09645_cas5_CAS-I-E	gnl\|CDD\|187776
NZ_CP044961.1\|WP_001219245.1\|3065157_3065637_-\|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase	unknown	unknown	gnl\|CDD\|178851
NZ_CP044961.1\|WP_000144832.1\|3073855_3074776_-\|type-I-E-CRISPR-associated-endonuclease-Cas1	cas1	cd09719_cas1_CAS-I-E	gnl\|CDD\|274693
NZ_CP044961.1\|WP_020837087.1\|3067833_3069273_-\|sulfate-adenylyltransferase-subunit-CysN	unknown	unknown	gnl\|CDD\|235349
NZ_CP044961.1\|WP_020837085.1\|3077233_3077794_-\|type-I-E-CRISPR-associated-protein-Cse2/CasB	cse2gr11	cd09731_cse2gr11_CAS-I-E	gnl\|CDD\|187862

Protein	Function_ID	Function_description	E-value
NZ_CP044961.1\|WP_000741650.1\|3065636_3066347_-\|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	gnl\|CDD\|234670	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase.	2.67998e-119
NZ_CP044961.1\|WP_000206415.1\|3076161_3077220_-\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	gnl\|CDD\|273843	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family is represented by CT1975 of Chlorobium tepidum and is part of the Ecoli subtype of CRISPR/Cas locis. It is designated Cse4, for CRISPR/Cas Subtype Ecoli protein 4.	2.67517e-131
NZ_CP044961.1\|WP_000372384.1\|3069282_3070191_-\|sulfate-adenylyltransferase-subunit-CysD	gnl\|CDD\|235375	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD.	0
NZ_CP044961.1\|WP_001118109.1\|3066867_3067224_-\|DUF3561-family-protein	gnl\|CDD\|371891	pfam12084, DUF3561, Protein of unknown function (DUF3561). This family of proteins is functionally uncharacterized. This protein is found in bacteria. Proteins in this family are about 110 amino acids in length.	4.85353e-49
NZ_CP044961.1\|WP_000134246.1\|3064111_3065161_-\|tRNA-pseudouridine(13)-synthase-TruD	gnl\|CDD\|234884	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed.	0
NZ_CP044961.1\|WP_000210927.1\|3086028_3087828_-\|NADPH-dependent-assimilatory-sulfite-reductase-flavoprotein-subunit	gnl\|CDD\|182862	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit.	0
NZ_CP044961.1\|WP_000080404.1\|3083506_3084241_-\|phosphoadenosine-phosphosulfate-reductase	gnl\|CDD\|234997	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase.	2.40487e-139
NZ_CP044961.1\|WP_001221538.1\|3063369_3064131_-\|5'/3'-nucleotidase-SurE	gnl\|CDD\|234732	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional.	1.7078e-146
NZ_CP044961.1\|WP_000490481.1\|3070441_3071488_+\|aminopeptidase	gnl\|CDD\|182299	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional.	0
NZ_CP044961.1\|WP_001518648.1\|3073562_3073856_-\|type-I-E-CRISPR-associated-endoribonuclease-Cas2	gnl\|CDD\|236930	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional.	1.1867e-62
NZ_CP044961.1\|WP_001173663.1\|3067241_3067847_-\|adenylyl-sulfate-kinase	gnl\|CDD\|179661	PRK03846, PRK03846, adenylylsulfate kinase; Provisional.	4.61291e-146
NZ_CP044961.1\|WP_001145543.1\|3082465_3083419_+\|SPI-1-type-III-secretion-system-effector-SopD	gnl\|CDD\|185277	PRK15379, PRK15379, type III secretion system effector SopD.	0
NZ_CP044961.1\|WP_001290660.1\|3084316_3086029_-\|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit	gnl\|CDD\|237402	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit.	0
NZ_CP044961.1\|WP_000517480.1\|3066365_3066677_-\|cell-division-protein-FtsB	gnl\|CDD\|179156	PRK00888, ftsB, cell division protein FtsB; Reviewed.	1.08865e-64
NZ_CP044961.1\|WP_000281486.1\|3074772_3075423_-\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	gnl\|CDD\|273869	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model family, represented by CT1974 from Chlorobium tepidum, is found in the Ecoli subtype of CRISPR/Cas regions and is designated Cse3 (CRISPR/Cas Subtype Ecoli protein 3). The representative of this family from Thermus thermophilus HB8 (TTHB192) has been crystallized and found to have a structure consisting of two domains with opposing parallel beta-sheets known as a beta-sheet platform. This structure is similar to those found in the Sex-lethal protein and poly(A)-binding protein. This structure is consistent with an RNA-binding function.	1.11215e-74
NZ_CP044961.1\|WP_000085114.1\|3075404_3076151_-\|type-I-E-CRISPR-associated-protein-Cas5/CasD	gnl\|CDD\|187776	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas5 is a RAMP superfamily protein; Subunit of the Cascade complex.	7.90971e-48
NZ_CP044961.1\|WP_001219245.1\|3065157_3065637_-\|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase	gnl\|CDD\|178851	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed.	3.20925e-104
NZ_CP044961.1\|WP_000144832.1\|3073855_3074776_-\|type-I-E-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|274693	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the ECOLI subtype of CRISPR/Cas system.	1.21084e-157
NZ_CP044961.1\|WP_020837087.1\|3067833_3069273_-\|sulfate-adenylyltransferase-subunit-CysN	gnl\|CDD\|235349	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional.	0
NZ_CP044961.1\|WP_020837085.1\|3077233_3077794_-\|type-I-E-CRISPR-associated-protein-Cse2/CasB	gnl\|CDD\|187862	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Small alpha-helical protein; also known as Cse2/CasB/YgcK family; specific gene for I-E subtype;.	3.00753e-33

>NZ_CP044961.1|WP_000490481.1|3070441_3071488_+|aminopeptidase
MFSATRRFAVILALGVGFILPAQAASPGPGEIANTQARHIATFFPGRMTGSPAEMLSADYLRQQFTQMGYQSDIRTFNSRFIYTTKDNRKNWHNVTGSTVIAAHEGRVPQQIIIMAHLDTYAPQSDADVDANLGGLTLQGMDDNAAGLGVMLELAARLKDIPTHYGIRFIATSGEEEGKLGAENLLKRMSDAEKKNTLLVINLDNLIVGDKLYFNSGKNTPEAVRTLTRDRALAIARRYGIAANTNPGRNPSYPKGTGCCNDAEVFDKAGISVLSVEATNWNLGKKDGYQQRVKNASFPNGNSWHDVRLDNQQHIDKALPGRIERRSRDVVRIMLPLVKELAKAEKTS
>NZ_CP044961.1|WP_000372384.1|3069282_3070191_-|sulfate-adenylyltransferase-subunit-CysD
MDQKRLTHLRQLEAESIHIIREVAAEFANPVMLYSIGKDSSVMLHLARKAFYPGTLPFPLLHVDTGWKFREMYAFRDRTANAYGCELLVHKNPEGVAMGINPFVHGSAKHTDIMKTEGLKQALNKYGFDAAFGGARRDEEKSRAKERIYSFRDRFHRWDPKNQRPELWRNYNGQINKGESIRVFPLSNWTEQDIWQYIWLENIDIVPLYLAAERPVLERDGMLMMVDDDRIDLQPGEVIKKRMVRFRTLGCWPLTGAVESHAQTLPEIIEEMLVSTTSERQGRMIDRDQAGSMELKKRQGYF
>NZ_CP044961.1|WP_020837087.1|3067833_3069273_-|sulfate-adenylyltransferase-subunit-CysN
MNTILAQQIANEGGVEAWMIAQQHKSLLRFLTCGSVDDGKSTLIGRLLHDTLQIYEDQLSSLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFSTERRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTRRHSFISTLLGIKHLVVAINKMDLVDYREETFARIREDYLTFAEQLPGDLDIRFVPLSALEGDNVAAQSANMRWYSGPTLLEVLETVDIQRAVDRQPMRFPVQYVNRPNLDFRGYAGTLASGSVKVGERIKVLPFGVESSVARIVTFDGDKEEACAGEAITLVLNDDIDISRGDLLLAANETLAPARHAAIDVVWMAEQPLAPGQSYDVKLAGKKTRARIEAIRYQIDINNLTQRDVESLPLNGIGLVEMTFDEPLALDIYQQNPVTGGLIFIDRLSNVTVGAGMVRELDERGATPPVEYSAFELELNALVRRHFPHWDARDLLGDKHGAA
>NZ_CP044961.1|WP_001173663.1|3067241_3067847_-|adenylyl-sulfate-kinase
MALHDENVVWHSHPVTVAAREQLHGHRGVVLWFTGLSGSGKSTVAGALEEALHQRGVSTYLLDGDNVRHGLCRDLGFSDADRQENIRRVGEVASLMADAGLIVLTAFISPHRAERQLVKERVGHDRFIEIYVNTPLAICEQRDPKGLYKKARAGELRNFTGIDAIYEAPDSPQVHLNGEQLVTNLVSQLLDLLRRRDIIRS
>NZ_CP044961.1|WP_001118109.1|3066867_3067224_-|DUF3561-family-protein
MPGMVKVTGFNMRNSHNITFTRSDAFMVDDDATSAFPGAVVGFVSWLLALGIPFLLYGPNTLFFFLYTWPFFLALMPVSVIIGIALHLLVKGKILFSIMFTLLAVGALFGALFIWLLG
>NZ_CP044961.1|WP_000517480.1|3066365_3066677_-|cell-division-protein-FtsB
MGKLTLLLLALLVWLQYSLWFGKNGIHDYSRVNDDVVAQQATNAKLKARNDQLFAEIDDLNGGQEAIEERARNELSMTKPGETFYRLVPDASKRAATAGQTHR
>NZ_CP044961.1|WP_000741650.1|3065636_3066347_-|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase
MAATLLDVCAVVPAAGFGRRMQTECPKQYLSIGNKTILEHSVHALLAHPRVTRVVIAISPGDHRFAQLPLANHPQITVVDGGNERADSVLAGLQAVAKAQWVLVHDAARPCLHQDDLARLLAISENSRVGGILASPVRDTMKRGEPGKNAIAHTVERADLWHALTPQFFPRELLYDCLTRALNEGATITDEASALEYCGFHPALVEGRADNIKVTRPEDLALAEFYLTRTIHQEKA
>NZ_CP044961.1|WP_001219245.1|3065157_3065637_-|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase
MRIGHGFDVHAFGGEGPIIIGGVRIPYEKGLLAHSDGDVALHALTDALLGAAALGDIGKLFPDTDPAFKGADSRELLREAWRRIQAKGYTLGNVDVTIIAQAPKMLPHIPQMRVFIAEDLGCHMDEVNVKATTTEKLGFTGRGEGIACEAVALLMKAAK
>NZ_CP044961.1|WP_000134246.1|3064111_3065161_-|tRNA-pseudouridine(13)-synthase-TruD
MTEFDNLTWLHGKPQGSGLLKANPEDFVVVEDLGFTPDGEGEHILLRILKNGCNTRFVADALAKFLKIHAREVSFAGQKDKHAVTEQWLCARVPGKEMPDFSAFQLEGCKVLEYARHKRKLRLGALKGNAFTLVLREISDRRDVETRLQAIRDGGVPNYFGAQRFGIGGSNLQGALRWAQSNAPVRDRNKRSFWLSAARSALFNQIVHQRLKKPDFNQVVDGDALQLAGRGSWFVATSEELPELQRRVDEKELMITASLPGSGEWGTQRAALAFEQDAIAQETVLQSLLLREKVEASRRAMLLYPQQLSWNWWDDVTVELRFWLPAGSFATSVVRELINTMGDYAHIAE
>NZ_CP044961.1|WP_001221538.1|3063369_3064131_-|5'/3'-nucleotidase-SurE
MRILLSNDDGVHAPGIQTLAKALREFADVQVVAPDRNRSGASNSLTLESSLRTFTFDNGDIAVQMGTPTDCVYLGVNALMRPRPDIVVSGINAGPNLGDDVIYSGTVAAAMEGRHLGFPALAVSLNGYQHYDTAAAVTCALLRGLSREPLRTGRILNVNVPDLPLAQVKGIRVTRCGSRHPADKVIPQEDPRGNTLYWIGPPGDKYDAGPDTDFAAVDEGYVSVTPLHVDLTAHSAHDVVSDWLDSVGVGTQW
>NZ_CP044961.1|WP_001518648.1|3073562_3073856_-|type-I-E-CRISPR-associated-endoribonuclease-Cas2
MSMVVVVTENVPPRLRGRLAVWLLEVRAGVYVGDTSKRIREMIWQQITQLGGVGNVVMAWATNTESGFEFQTWGENRRIPVDLDGLRLVSFLPVENQ
>NZ_CP044961.1|WP_000144832.1|3073855_3074776_-|type-I-E-CRISPR-associated-endonuclease-Cas1
MTFVPLNPIPLKDRTSMIFLQYGQIDVLDGAFVLIDKTGIRTHIPVGSVACIMLEPGTRVSHAAVRLASTVGTLLVWVGEAGVRVYSSGQPGGARADKLLYQAKLALDDDLRLKVVRKMYELRFREPPPARRSVEQLRGIEGSRVRATYALLAKQYGVKWHGRNYDPKDWEKGDVVNRCISAATSCLYGISEAAILAAGYAPAIGFIHSGKPLSFVYDIADIIKFESVVPKAFEIAARHPAEPDKEVRLACRDIFRSSKLTGKLIPLIEEVLAAGEIEPPQPAPDMLPPAIPEPESLGDSGHRGHG
>NZ_CP044961.1|WP_000281486.1|3074772_3075423_-|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE
MYLSRITLHTSELSPAQLLHLVERGEYVMHQWLWDLFPGSKERQFLYRREELQGAFRFFVLSQEQPAASAIFDVQTRPFAPTLSAGQTLRFNLRANPTVCKNGKRHDLLMEAKRQRKTQGDSQDIWSYQQQAALTWLARQGEQNGFTLREASVDAYRQQQIRRGKDRQMIQFSSVDYTGVLVINEPALFLQRLAQGFGKSRAFGCGMMMIKPGDDA
>NZ_CP044961.1|WP_000085114.1|3075404_3076151_-|type-I-E-CRISPR-associated-protein-Cas5/CasD
MSQYLVFQLHGPMASWGVDAPGEVRHSHELPSRSALLGLLAAALGIRRDEEERLNAFNRHYQFLLCASGNPRWARDYHTVQMPKEVRKARYFSRREELQDPELLSALISRRDYYTDAWWMIAVSATPDAPYTLAQLQTSLQHPVFPLYLGRKSHPLALPLAPQLLEGSAAGVLREAYRWYQDQFNALKLPLPRLQNECWWEGEHDGLTASKILRRRDMPLSRQQWLFGERSVNQGPWLRKEDACISQE
>NZ_CP044961.1|WP_000206415.1|3076161_3077220_-|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC
MTTFIQLHLLTAYPAANLNRDDTGAPKTVVLGGATRLRISSQSLKRAWRTSELFEQALAGHIGIRTGRIAREAAQILVDSGIDAKKAVEYVKNIANCFGKVKEDKKPKDELTNAETEQLVHISPAEFEAVKALARRLAEEKRPATEEEAELLRHDRMAVDIAMFGRMLAKKTDFNVEAACQVAHAFGVSETIIEDDFFTAVDDLRQASAEDAGAGHLGETGFGSALFYTYICIDKDLLVKNLNDNEELANKTLRAFTEAALKVSPTGKQNSFASRAYASWALAEKGTDQPRSLAAAFYEPINGTDQLNVAVKRITSLHKNMNKVYGQRTDTASFDVMNQQGSMEDVLDFICA
>NZ_CP044961.1|WP_020837085.1|3077233_3077794_-|type-I-E-CRISPR-associated-protein-Cse2/CasB
MSVVTKDDKATLRQWHEELQEKRGLRASLRRSKTVNDACLAEGLHSLLMQTHSLWKNKAPWNVTALAITAALAAHIKFIDEQKSFAAQLGQKKGADTPVMSKLRFSHLLAVKTPDELLRQLRRAVKLLDGSVNLFSLADDIFCWCQEQNDLLNHHRRQQRPTEFLRIRWALEYYQAGDGDTDNEQD
>NZ_CP044961.1|WP_001145543.1|3082465_3083419_+|SPI-1-type-III-secretion-system-effector-SopD
MPVTLSFGNHQNYTLNESRLAHLLSADKEKAIHMGGWDKVQDHFRAEKKDHALEVLHSIIHGQGRGEPGEMEVNVEDINKIYAFKRLQHLACPAHQDLFTIKMDASQTQFLLMVGDTVISQSNIKDILNISDDAVIESMSREERQLFLQICEVIGSKMTWHPELLQESISTLRKEVTGNAQIKTAVYEMMRPAEAPDHPLVEWQDSLTADEKSMLACINAGNFEPTTQFCKIGYQEVQGEVAFSMMHPCISYLLHSYSPFSEFKPTNSGFLKKLNQDYNDYHAKKMFIDVILEKLYLTHERSLHIGKDGCSRNILLT
>NZ_CP044961.1|WP_000080404.1|3083506_3084241_-|phosphoadenosine-phosphosulfate-reductase
MSQLDLNALNELPKVDRVMALAETNAQLEKLSAEERVAWALENLPGEYVLSSSFGIQAAVSLHLVNQIRPDIPVILTDTGYLFPETYQFIDELTDKLKLNLKVYRAGESPAWQEARYGKLWEQGVEGIEKYNEINKVEPMNRALKELKAQTWFAGLRREQSGSRAHLPVLAIQRGVFKVLPIIDWDNRTVYQYLQKHGLKYHPLWDQGYLSVGDTHTTRKWEPGMAEEETRFFGLKRECGLHEG
>NZ_CP044961.1|WP_001290660.1|3084316_3086029_-|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit
MSEKHPGPLVVEGKLSDAERMKLESNYLRGTIAEDLNDGLTGGFKGDNFLLIRFHGMYQQDDRDIRAERAAQKLEPRHAMLLRCRLPGGVITTTQWQAIDKFAADNTIYGSIRLTNRQTFQFHGILKKNVKPVHQMLHSVGLDALATANDMNRNVLCTSNPYESQLHAEAYEWAKKISEHLLPRTRAYAEIWLDQEKVATTDEEPILGQTYLPRKFKTTVVIPPQNDIDLHANDMNFVAIAENGKLVGFNLLVGGGLSIEHGNKKTYARTASEFGYLPLEHTLAVAEAVVTTQRDWGNRTDRKNAKTKYTLERVGLETFKAEVERRAGIKFEPIRPYEFTGRGDRIGWVKGIDDKWHLTLFIENGRILDYPGRPLKTGLLEIAKIHQGEFRITANQNLIIASVPESQKAKIETLARDHGLMNAVKPQRENSMACVSFPTCPLAMAEAERFLPSFTDKVEAILEKHGIPDEHIVMRVTGCPNGCGRAMLAEIGLVGKAPGRYNLHLGGNRIGSRIPRMYKENIAEPDILASLDELIGRWAKEREAGEGFGDFTVRAGIIRPVLDPARDFWE
>NZ_CP044961.1|WP_000210927.1|3086028_3087828_-|NADPH-dependent-assimilatory-sulfite-reductase-flavoprotein-subunit
MTTPAPLTGLLPLNPEQLARLQAATTDLTPEQLAWVSGYFWGVLNPRSGAVAVTPVPERKMPRVTLISASQTGNARRVAEALRDDLLAANLNVTLVNAGDYKFKQIASEKLLVIVTSTQGEGEPPEEAVALHKFLFSKKAPKLENTAFAVFSLGDTSYEFFCQSGKDFDSKLAELGGERLLDRVDADVEYQAAASEWRARVVDVLKSRAPVAAPSQSVATGAVNDIHTSPYTKDAPLIATLSVNQKITGRNSEKDVRHIEIDLGDSGLRYQPGDALGVWYQNDPALVKELVELLWLKGDEPVTVDGKTLPLAEALEWHFELTVNTANIVENYATLTRSESLLPLVGDKAQLQHYAATTPIVDMVRFSPAQLDAQALIDLLRPLTPRLYSIASAQAEVESEVHITVGVVRYDIEGRARAGGASSFLADRVEEEGEVRVFIEHNDNFRLPANPETPVIMIGPGTGIAPFRSFMQQRAAEGVEGKNWLFFGNPHFTEDFLYQVEWQRYVKEGVLSRIDLAWSRDQKEKIYVQDKLREQGAELWRWINDGAHIYVCGDARRMAADVEKALLEVIAEFGGMDLESADEYLSELRVERRYQRDVY

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Crispr_ID: NZ_CP044961_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP044961_2

3089597-3091090

TypeI-E

I-E

Consensus_repeat	Method
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CRISPRCasFinder
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CRT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	PILER-CR

24 spacers

cse2gr11,cas7,cas5,cas6e

The CRISPR arrays of NZ_CP044961_2

>merge|NZ_CP044961|2|3089597-3091090|CRISPRCasFinder,CRT,PILER-CR
ACGGCTATCCTTGTTGGCGCGGGGAACACATCTTCATATTGCGTGACGCTGCCGATGAACGCGGTTTATCCCCGCTGGCGCGGGGAACACTCTTTATCAGCTAACCATTTCCAGAACTCGTCCGGTTTATCCCTGCTGGCGCGGGGAACACTATAATATGAATTAATTTTTGCGCATAACCTGCGGTTTATCCCCGCTGGCGCGGGGAACACTGCCCGTTCTGCCTCTTCGCACTCTCGATCAACGGTTTATCCCCGCTGGCGCGGGGAACACTGCGTAATGGGCTACCTGAACTTCACATATCCCGGTTTATCCCCGCTAGCGCGGGGAACATATTAAGCGCGCAAAGTTTGGGTTAATTGGACACGGTTTATCCCCGCTGGCGCGGGGAACACCGTATTCGTCACACAGCCCCGTCCAGAAATGACGGTTTATCCCCGCTGGCACGGGGAACACTAACGAACTGAATAAAATGTCAGAAAGTGACGCGGCTTATCCCCGCTGGCGCGGGGAACACGCAGCTTAGCGACGAAATTAAAACCGAACTCACCGGTTTATCCCCGCTGGCGCGGGGAACACTGCCAGTGACTACAGAAGCGTCGCTATCGGGGCGGTTTATCCCCGCTGGCGCGGGGAACACACCGATAAACAACCGCATAGCCTCTTTCGTTTCGATTTATCCCTGCTGGCGCGGGGAACACTGCTCAATAACGTCGTAAATAGCGTAAGCTGGCGGTTTATCCCCGCTGGCGCGGGGAACACTATTTCGCCTTCGGCACTGACGTCACCGTCAACGGTTTATCCCCGCTGGCGCGGGGAACACGTCGCGTTCGTTGCCGGTATAGACCAGCGTCACGGTTTATCCCCGCTGGCGCGGGGAACACATCGAATCGAAACCCCAGCCACAGAAATAATTCGGTTTATCCCCGCTGGCGCGGGGAACACGCTCATGTCAAACGCCATCAGCGTTCCGGCATCGGTTTATCCCCGCTAGCGCGGGGAACACAATCGCCAGCCTCGGAAATATTCCATCCTCCGCGGTTTATCCCCGCTGGCGCGGGGAACACAGGAACTAAACAGCCTGACCGTTGAGGATCTGCGGTTTATCCCCGCTGGCGCGGGGAACACACCGGACAAATCTTTTTTTTCCTGTTCCTGTTCGGTTTATCCCCGCTGGCGCGGGGAACACGGGCGGTCCCCGGCCTCAATACCGCGCTGACGCGGTTTATCCCCGCTGGCGCGGGGAACACTTGAGGTGCCGCTTGCCGTTCTTCTGTTTTTTCGGTTTATCCCCGCTGGCGCGGGGAACACGGGCACTATGAACGGATCGGCGCTGATGCCGGCGGTTTATCCCCGCTGGCGCGGGGAACACGGTAAAGCCACACCATTTTTTATTGACCTCGCCGGTTTATCCCCGCTGGCGCGGGGAACACCTAGGAGGCGTAATGAATACTACGTATCAAAACGGTTTATCCCCGCTGGCGCGGGGAACAC

>NZ_CP044961|2|3|3089597-3091090|CRISPRCasFinder
ACGGCTATCCTTGTTGGCGCGGGGAACAC	ATCTTCATATTGCGTGACGCTGCCGATGAACG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TCTTTATCAGCTAACCATTTCCAGAACTCGTC
CGGTTTATCCCTGCTGGCGCGGGGAACAC	TATAATATGAATTAATTTTTGCGCATAACCTG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TGCCCGTTCTGCCTCTTCGCACTCTCGATCAA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TGCGTAATGGGCTACCTGAACTTCACATATCC
CGGTTTATCCCCGCTAGCGCGGGGAACAT	ATTAAGCGCGCAAAGTTTGGGTTAATTGGACA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CGTATTCGTCACACAGCCCCGTCCAGAAATGA
CGGTTTATCCCCGCTGGCACGGGGAACAC	TAACGAACTGAATAAAATGTCAGAAAGTGACG
CGGCTTATCCCCGCTGGCGCGGGGAACAC	GCAGCTTAGCGACGAAATTAAAACCGAACTCAC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TGCCAGTGACTACAGAAGCGTCGCTATCGGGG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	ACCGATAAACAACCGCATAGCCTCTTTCGTTT
CGATTTATCCCTGCTGGCGCGGGGAACAC	TGCTCAATAACGTCGTAAATAGCGTAAGCTGG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TATTTCGCCTTCGGCACTGACGTCACCGTCAA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GTCGCGTTCGTTGCCGGTATAGACCAGCGTCA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	ATCGAATCGAAACCCCAGCCACAGAAATAATT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GCTCATGTCAAACGCCATCAGCGTTCCGGCAT
CGGTTTATCCCCGCTAGCGCGGGGAACAC	AATCGCCAGCCTCGGAAATATTCCATCCTCCG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	AGGAACTAAACAGCCTGACCGTTGAGGATCTG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	ACCGGACAAATCTTTTTTTTCCTGTTCCTGTT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GGGCGGTCCCCGGCCTCAATACCGCGCTGACG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TTGAGGTGCCGCTTGCCGTTCTTCTGTTTTTT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GGGCACTATGAACGGATCGGCGCTGATGCCGG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GGTAAAGCCACACCATTTTTTATTGACCTCGC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CTAGGAGGCGTAATGAATACTACGTATCAAAA
CGGTTTATCCCCGCTGGCGCGGGGAACAC

>NZ_CP044961|2|3|3089597-3091090|CRT
ACGGCTATCCTTGTTGGCGCGGGGAACAC	ATCTTCATATTGCGTGACGCTGCCGATGAACG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TCTTTATCAGCTAACCATTTCCAGAACTCGTC
CGGTTTATCCCTGCTGGCGCGGGGAACAC	TATAATATGAATTAATTTTTGCGCATAACCTG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TGCCCGTTCTGCCTCTTCGCACTCTCGATCAA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TGCGTAATGGGCTACCTGAACTTCACATATCC
CGGTTTATCCCCGCTAGCGCGGGGAACAT	ATTAAGCGCGCAAAGTTTGGGTTAATTGGACA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CGTATTCGTCACACAGCCCCGTCCAGAAATGA
CGGTTTATCCCCGCTGGCACGGGGAACAC	TAACGAACTGAATAAAATGTCAGAAAGTGACG
CGGCTTATCCCCGCTGGCGCGGGGAACAC	GCAGCTTAGCGACGAAATTAAAACCGAACTCAC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TGCCAGTGACTACAGAAGCGTCGCTATCGGGG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	ACCGATAAACAACCGCATAGCCTCTTTCGTTT
CGATTTATCCCTGCTGGCGCGGGGAACAC	TGCTCAATAACGTCGTAAATAGCGTAAGCTGG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TATTTCGCCTTCGGCACTGACGTCACCGTCAA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GTCGCGTTCGTTGCCGGTATAGACCAGCGTCA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	ATCGAATCGAAACCCCAGCCACAGAAATAATT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GCTCATGTCAAACGCCATCAGCGTTCCGGCAT
CGGTTTATCCCCGCTAGCGCGGGGAACAC	AATCGCCAGCCTCGGAAATATTCCATCCTCCG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	AGGAACTAAACAGCCTGACCGTTGAGGATCTG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	ACCGGACAAATCTTTTTTTTCCTGTTCCTGTT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GGGCGGTCCCCGGCCTCAATACCGCGCTGACG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TTGAGGTGCCGCTTGCCGTTCTTCTGTTTTTT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GGGCACTATGAACGGATCGGCGCTGATGCCGG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GGTAAAGCCACACCATTTTTTATTGACCTCGC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CTAGGAGGCGTAATGAATACTACGTATCAAAA
CGGTTTATCCCCGCTGGCGCGGGGAACAC

>NZ_CP044961|2|3|3089658-3091090|PILER-CR
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TCTTTATCAGCTAACCATTTCCAGAACTCGTC
CGGTTTATCCCTGCTGGCGCGGGGAACAC	TATAATATGAATTAATTTTTGCGCATAACCTG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TGCCCGTTCTGCCTCTTCGCACTCTCGATCAA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TGCGTAATGGGCTACCTGAACTTCACATATCC
CGGTTTATCCCCGCTAGCGCGGGGAACAT	ATTAAGCGCGCAAAGTTTGGGTTAATTGGACA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CGTATTCGTCACACAGCCCCGTCCAGAAATGA
CGGTTTATCCCCGCTGGCACGGGGAACAC	TAACGAACTGAATAAAATGTCAGAAAGTGACG
CGGCTTATCCCCGCTGGCGCGGGGAACAC	GCAGCTTAGCGACGAAATTAAAACCGAACTCAC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TGCCAGTGACTACAGAAGCGTCGCTATCGGGG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	ACCGATAAACAACCGCATAGCCTCTTTCGTTT
CGATTTATCCCTGCTGGCGCGGGGAACAC	TGCTCAATAACGTCGTAAATAGCGTAAGCTGG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TATTTCGCCTTCGGCACTGACGTCACCGTCAA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GTCGCGTTCGTTGCCGGTATAGACCAGCGTCA
CGGTTTATCCCCGCTGGCGCGGGGAACAC	ATCGAATCGAAACCCCAGCCACAGAAATAATT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GCTCATGTCAAACGCCATCAGCGTTCCGGCAT
CGGTTTATCCCCGCTAGCGCGGGGAACAC	AATCGCCAGCCTCGGAAATATTCCATCCTCCG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	AGGAACTAAACAGCCTGACCGTTGAGGATCTG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	ACCGGACAAATCTTTTTTTTCCTGTTCCTGTT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GGGCGGTCCCCGGCCTCAATACCGCGCTGACG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TTGAGGTGCCGCTTGCCGTTCTTCTGTTTTTT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GGGCACTATGAACGGATCGGCGCTGATGCCGG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GGTAAAGCCACACCATTTTTTATTGACCTCGC
CGGTTTATCCCCGCTGGCGCGGGGAACAC	CTAGGAGGCGTAATGAATACTACGTATCAAAA
CGGTTTATCCCCGCTGGCGCGGGGAACAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP044961.1\|WP_000108313.1\|3088251_3088614_+\|6-carboxytetrahydropterin-synthase-QueD	unknown	unknown	gnl\|CDD\|238264
NZ_CP044961.1\|WP_000210863.1\|3093574_3095212_-\|CTP-synthase-(glutamine-hydrolyzing)	unknown	unknown	gnl\|CDD\|235437
NZ_CP044961.1\|WP_000206415.1\|3076161_3077220_-\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	cas7	pfam09344_cas7_CAS-I-E	gnl\|CDD\|273843
NZ_CP044961.1\|WP_000036734.1\|3092193_3093492_-\|phosphopyruvate-hydratase	unknown	unknown	gnl\|CDD\|234617
NZ_CP044961.1\|WP_024144041.1\|3097007_3097304_-\|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin	unknown	unknown	gnl\|CDD\|226194
NZ_CP044961.1\|WP_000226838.1\|3097709_3099944_-\|GTP-diphosphokinase	unknown	unknown	gnl\|CDD\|182797
NZ_CP044961.1\|WP_001208013.1\|3088701_3089499_-\|MBL-fold-metallo-hydrolase	unknown	unknown	gnl\|CDD\|224158
NZ_CP044961.1\|WP_000186400.1\|3101348_3104105_+\|two-component-sensor-histidine-kinase-BarA	unknown	unknown	gnl\|CDD\|236848
NZ_CP044961.1\|WP_000210927.1\|3086028_3087828_-\|NADPH-dependent-assimilatory-sulfite-reductase-flavoprotein-subunit	unknown	unknown	gnl\|CDD\|182862
NZ_CP044961.1\|WP_000046849.1\|3099995_3101291_-\|23S-rRNA-(uracil(1939)-C(5))-methyltransferase-RlmD	unknown	unknown	gnl\|CDD\|237291
NZ_CP044961.1\|WP_000480218.1\|3097269_3097626_-\|type-II-toxin-antitoxin-system-ParD-family-antitoxin	unknown	unknown	gnl\|CDD\|226136
NZ_CP044961.1\|WP_001145543.1\|3082465_3083419_+\|SPI-1-type-III-secretion-system-effector-SopD	unknown	unknown	gnl\|CDD\|185277
NZ_CP044961.1\|WP_001290660.1\|3084316_3086029_-\|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit	unknown	unknown	gnl\|CDD\|237402
NZ_CP044961.1\|WP_000080404.1\|3083506_3084241_-\|phosphoadenosine-phosphosulfate-reductase	unknown	unknown	gnl\|CDD\|234997
NZ_CP044961.1\|WP_000210449.1\|3095439_3096240_-\|nucleoside-triphosphate-pyrophosphohydrolase	unknown	unknown	gnl\|CDD\|236569
NZ_CP044961.1\|WP_000085114.1\|3075404_3076151_-\|type-I-E-CRISPR-associated-protein-Cas5/CasD	cas5	cd09645_cas5_CAS-I-E	gnl\|CDD\|187776
NZ_CP044961.1\|WP_001199961.1\|3091386_3092058_-\|7-carboxy-7-deazaguanine-synthase-QueE	unknown	unknown	gnl\|CDD\|275126
NZ_CP044961.1\|WP_000706479.1\|3104148_3105291_-\|glycerate-kinase	unknown	unknown	gnl\|CDD\|224840
NZ_CP044961.1\|WP_020837085.1\|3077233_3077794_-\|type-I-E-CRISPR-associated-protein-Cse2/CasB	cse2gr11	cd09731_cse2gr11_CAS-I-E	gnl\|CDD\|187862
NZ_CP044961.1\|WP_000281486.1\|3074772_3075423_-\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	cas6e	cd09664_cas6e_CAS-I-E	gnl\|CDD\|273869

Protein	Function_ID	Function_description	E-value
NZ_CP044961.1\|WP_000108313.1\|3088251_3088614_+\|6-carboxytetrahydropterin-synthase-QueD	gnl\|CDD\|238264	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS). Folate derivatives are essential cofactors in the biosynthesis of purines, pyrimidines, and amino acids, as well as formyl-tRNA. Mammalian cells are able to utilize pre-formed folates after uptake by a carrier-mediated active transport system. Most microbes and plants lack this system and must synthesize folates de novo from guanosine triphosphate. One enzyme from this pathway is PTPS which catalyzes the conversion of dihydroneopterin triphosphate to 6-pyruvoyl tetrahydropterin. The functional enzyme is a hexamer of identical subunits.	2.78454e-58
NZ_CP044961.1\|WP_000210863.1\|3093574_3095212_-\|CTP-synthase-(glutamine-hydrolyzing)	gnl\|CDD\|235437	PRK05380, pyrG, CTP synthetase; Validated.	0
NZ_CP044961.1\|WP_000206415.1\|3076161_3077220_-\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	gnl\|CDD\|273843	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family is represented by CT1975 of Chlorobium tepidum and is part of the Ecoli subtype of CRISPR/Cas locis. It is designated Cse4, for CRISPR/Cas Subtype Ecoli protein 4.	2.67517e-131
NZ_CP044961.1\|WP_000036734.1\|3092193_3093492_-\|phosphopyruvate-hydratase	gnl\|CDD\|234617	PRK00077, eno, enolase; Provisional.	0
NZ_CP044961.1\|WP_024144041.1\|3097007_3097304_-\|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin	gnl\|CDD\|226194	COG3668, ParE, Plasmid stabilization system protein [General function prediction only].	9.62015e-14
NZ_CP044961.1\|WP_000226838.1\|3097709_3099944_-\|GTP-diphosphokinase	gnl\|CDD\|182797	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional.	0
NZ_CP044961.1\|WP_001208013.1\|3088701_3089499_-\|MBL-fold-metallo-hydrolase	gnl\|CDD\|224158	COG1237, COG1237, Metal-dependent hydrolases of the beta-lactamase superfamily II [General function prediction only].	8.44116e-102
NZ_CP044961.1\|WP_000186400.1\|3101348_3104105_+\|two-component-sensor-histidine-kinase-BarA	gnl\|CDD\|236848	PRK11107, PRK11107, hybrid sensory histidine kinase BarA; Provisional.	0
NZ_CP044961.1\|WP_000210927.1\|3086028_3087828_-\|NADPH-dependent-assimilatory-sulfite-reductase-flavoprotein-subunit	gnl\|CDD\|182862	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit.	0
NZ_CP044961.1\|WP_000046849.1\|3099995_3101291_-\|23S-rRNA-(uracil(1939)-C(5))-methyltransferase-RlmD	gnl\|CDD\|237291	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD.	0
NZ_CP044961.1\|WP_000480218.1\|3097269_3097626_-\|type-II-toxin-antitoxin-system-ParD-family-antitoxin	gnl\|CDD\|226136	COG3609, COG3609, Predicted transcriptional regulators containing the CopG/Arc/MetJ DNA-binding domain [Transcription].	6.12601e-20
NZ_CP044961.1\|WP_001145543.1\|3082465_3083419_+\|SPI-1-type-III-secretion-system-effector-SopD	gnl\|CDD\|185277	PRK15379, PRK15379, type III secretion system effector SopD.	0
NZ_CP044961.1\|WP_001290660.1\|3084316_3086029_-\|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit	gnl\|CDD\|237402	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit.	0
NZ_CP044961.1\|WP_000080404.1\|3083506_3084241_-\|phosphoadenosine-phosphosulfate-reductase	gnl\|CDD\|234997	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase.	2.40487e-139
NZ_CP044961.1\|WP_000210449.1\|3095439_3096240_-\|nucleoside-triphosphate-pyrophosphohydrolase	gnl\|CDD\|236569	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed.	8.52469e-158
NZ_CP044961.1\|WP_000085114.1\|3075404_3076151_-\|type-I-E-CRISPR-associated-protein-Cas5/CasD	gnl\|CDD\|187776	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas5 is a RAMP superfamily protein; Subunit of the Cascade complex.	7.90971e-48
NZ_CP044961.1\|WP_001199961.1\|3091386_3092058_-\|7-carboxy-7-deazaguanine-synthase-QueE	gnl\|CDD\|275126	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE. Members of this radical SAM domain protein family appear to be the E. coli form of the queuosine biosynthesis protein QueE. QueE is involved in making preQ0 (7-cyano-7-deazaquanine), a precursor of both the bacterial/eukaryotic modified tRNA base queuosine and the archaeal modified base archaeosine. Members occur in species that lack known forms of QueE but usually are not found in queuosine biosynthesis operons. Members of this family tend to form bi-directional best hit matches to members of known (TIGR03365) and putative (TIGR03963) QueE families from other lineages.	1.43874e-155
NZ_CP044961.1\|WP_000706479.1\|3104148_3105291_-\|glycerate-kinase	gnl\|CDD\|224840	COG1929, COG1929, Glycerate kinase [Carbohydrate transport and metabolism].	0
NZ_CP044961.1\|WP_020837085.1\|3077233_3077794_-\|type-I-E-CRISPR-associated-protein-Cse2/CasB	gnl\|CDD\|187862	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Small alpha-helical protein; also known as Cse2/CasB/YgcK family; specific gene for I-E subtype;.	3.00753e-33
NZ_CP044961.1\|WP_000281486.1\|3074772_3075423_-\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	gnl\|CDD\|273869	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model family, represented by CT1974 from Chlorobium tepidum, is found in the Ecoli subtype of CRISPR/Cas regions and is designated Cse3 (CRISPR/Cas Subtype Ecoli protein 3). The representative of this family from Thermus thermophilus HB8 (TTHB192) has been crystallized and found to have a structure consisting of two domains with opposing parallel beta-sheets known as a beta-sheet platform. This structure is similar to those found in the Sex-lethal protein and poly(A)-binding protein. This structure is consistent with an RNA-binding function.	1.11215e-74

>NZ_CP044961.1|WP_001208013.1|3088701_3089499_-|MBL-fold-metallo-hydrolase
MALRIRVLLENHKGAGADKSLKVRPGLSLLVEDESTSILFDTGPDGSFMQNALAMGIDLSDVSAVVLSHGHYDHCGGVPWLPDSSRIICHPDIARERYAAMTFLGITRKIKKLSCEVDYSRYRMMYTRDPLPIGENFIWSGEIPVVAPEAYGIFGGHDAEPDSILDEGVLIYQSTKGLVIITGCGHRGIANIVRHCQNITGIKRIYALVGGFHLRCASPFTLWRVRRFLQEHKPEKLCGCHCTGAWGRLWLPEITAPATGDVLRF
>NZ_CP044961.1|WP_000108313.1|3088251_3088614_+|6-carboxytetrahydropterin-synthase-QueD
MSTTLYKDFTFEAAHRLPHVPEGHKCGRLHGHSFMVRLEITGEVDPHTGWIMDFADLKAAFKPTYDRLDHYYLNDIPGLSNPTSEVLAKWIWDQVKPVVPLLSAVMVKETCTAGCVYRGE
>NZ_CP044961.1|WP_000210927.1|3086028_3087828_-|NADPH-dependent-assimilatory-sulfite-reductase-flavoprotein-subunit
MTTPAPLTGLLPLNPEQLARLQAATTDLTPEQLAWVSGYFWGVLNPRSGAVAVTPVPERKMPRVTLISASQTGNARRVAEALRDDLLAANLNVTLVNAGDYKFKQIASEKLLVIVTSTQGEGEPPEEAVALHKFLFSKKAPKLENTAFAVFSLGDTSYEFFCQSGKDFDSKLAELGGERLLDRVDADVEYQAAASEWRARVVDVLKSRAPVAAPSQSVATGAVNDIHTSPYTKDAPLIATLSVNQKITGRNSEKDVRHIEIDLGDSGLRYQPGDALGVWYQNDPALVKELVELLWLKGDEPVTVDGKTLPLAEALEWHFELTVNTANIVENYATLTRSESLLPLVGDKAQLQHYAATTPIVDMVRFSPAQLDAQALIDLLRPLTPRLYSIASAQAEVESEVHITVGVVRYDIEGRARAGGASSFLADRVEEEGEVRVFIEHNDNFRLPANPETPVIMIGPGTGIAPFRSFMQQRAAEGVEGKNWLFFGNPHFTEDFLYQVEWQRYVKEGVLSRIDLAWSRDQKEKIYVQDKLREQGAELWRWINDGAHIYVCGDARRMAADVEKALLEVIAEFGGMDLESADEYLSELRVERRYQRDVY
>NZ_CP044961.1|WP_001290660.1|3084316_3086029_-|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit
MSEKHPGPLVVEGKLSDAERMKLESNYLRGTIAEDLNDGLTGGFKGDNFLLIRFHGMYQQDDRDIRAERAAQKLEPRHAMLLRCRLPGGVITTTQWQAIDKFAADNTIYGSIRLTNRQTFQFHGILKKNVKPVHQMLHSVGLDALATANDMNRNVLCTSNPYESQLHAEAYEWAKKISEHLLPRTRAYAEIWLDQEKVATTDEEPILGQTYLPRKFKTTVVIPPQNDIDLHANDMNFVAIAENGKLVGFNLLVGGGLSIEHGNKKTYARTASEFGYLPLEHTLAVAEAVVTTQRDWGNRTDRKNAKTKYTLERVGLETFKAEVERRAGIKFEPIRPYEFTGRGDRIGWVKGIDDKWHLTLFIENGRILDYPGRPLKTGLLEIAKIHQGEFRITANQNLIIASVPESQKAKIETLARDHGLMNAVKPQRENSMACVSFPTCPLAMAEAERFLPSFTDKVEAILEKHGIPDEHIVMRVTGCPNGCGRAMLAEIGLVGKAPGRYNLHLGGNRIGSRIPRMYKENIAEPDILASLDELIGRWAKEREAGEGFGDFTVRAGIIRPVLDPARDFWE
>NZ_CP044961.1|WP_000080404.1|3083506_3084241_-|phosphoadenosine-phosphosulfate-reductase
MSQLDLNALNELPKVDRVMALAETNAQLEKLSAEERVAWALENLPGEYVLSSSFGIQAAVSLHLVNQIRPDIPVILTDTGYLFPETYQFIDELTDKLKLNLKVYRAGESPAWQEARYGKLWEQGVEGIEKYNEINKVEPMNRALKELKAQTWFAGLRREQSGSRAHLPVLAIQRGVFKVLPIIDWDNRTVYQYLQKHGLKYHPLWDQGYLSVGDTHTTRKWEPGMAEEETRFFGLKRECGLHEG
>NZ_CP044961.1|WP_001145543.1|3082465_3083419_+|SPI-1-type-III-secretion-system-effector-SopD
MPVTLSFGNHQNYTLNESRLAHLLSADKEKAIHMGGWDKVQDHFRAEKKDHALEVLHSIIHGQGRGEPGEMEVNVEDINKIYAFKRLQHLACPAHQDLFTIKMDASQTQFLLMVGDTVISQSNIKDILNISDDAVIESMSREERQLFLQICEVIGSKMTWHPELLQESISTLRKEVTGNAQIKTAVYEMMRPAEAPDHPLVEWQDSLTADEKSMLACINAGNFEPTTQFCKIGYQEVQGEVAFSMMHPCISYLLHSYSPFSEFKPTNSGFLKKLNQDYNDYHAKKMFIDVILEKLYLTHERSLHIGKDGCSRNILLT
>NZ_CP044961.1|WP_020837085.1|3077233_3077794_-|type-I-E-CRISPR-associated-protein-Cse2/CasB
MSVVTKDDKATLRQWHEELQEKRGLRASLRRSKTVNDACLAEGLHSLLMQTHSLWKNKAPWNVTALAITAALAAHIKFIDEQKSFAAQLGQKKGADTPVMSKLRFSHLLAVKTPDELLRQLRRAVKLLDGSVNLFSLADDIFCWCQEQNDLLNHHRRQQRPTEFLRIRWALEYYQAGDGDTDNEQD
>NZ_CP044961.1|WP_000206415.1|3076161_3077220_-|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC
MTTFIQLHLLTAYPAANLNRDDTGAPKTVVLGGATRLRISSQSLKRAWRTSELFEQALAGHIGIRTGRIAREAAQILVDSGIDAKKAVEYVKNIANCFGKVKEDKKPKDELTNAETEQLVHISPAEFEAVKALARRLAEEKRPATEEEAELLRHDRMAVDIAMFGRMLAKKTDFNVEAACQVAHAFGVSETIIEDDFFTAVDDLRQASAEDAGAGHLGETGFGSALFYTYICIDKDLLVKNLNDNEELANKTLRAFTEAALKVSPTGKQNSFASRAYASWALAEKGTDQPRSLAAAFYEPINGTDQLNVAVKRITSLHKNMNKVYGQRTDTASFDVMNQQGSMEDVLDFICA
>NZ_CP044961.1|WP_000085114.1|3075404_3076151_-|type-I-E-CRISPR-associated-protein-Cas5/CasD
MSQYLVFQLHGPMASWGVDAPGEVRHSHELPSRSALLGLLAAALGIRRDEEERLNAFNRHYQFLLCASGNPRWARDYHTVQMPKEVRKARYFSRREELQDPELLSALISRRDYYTDAWWMIAVSATPDAPYTLAQLQTSLQHPVFPLYLGRKSHPLALPLAPQLLEGSAAGVLREAYRWYQDQFNALKLPLPRLQNECWWEGEHDGLTASKILRRRDMPLSRQQWLFGERSVNQGPWLRKEDACISQE
>NZ_CP044961.1|WP_000281486.1|3074772_3075423_-|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE
MYLSRITLHTSELSPAQLLHLVERGEYVMHQWLWDLFPGSKERQFLYRREELQGAFRFFVLSQEQPAASAIFDVQTRPFAPTLSAGQTLRFNLRANPTVCKNGKRHDLLMEAKRQRKTQGDSQDIWSYQQQAALTWLARQGEQNGFTLREASVDAYRQQQIRRGKDRQMIQFSSVDYTGVLVINEPALFLQRLAQGFGKSRAFGCGMMMIKPGDDA
>NZ_CP044961.1|WP_001199961.1|3091386_3092058_-|7-carboxy-7-deazaguanine-synthase-QueE
MQYPINEMFQTLQGEGYFTGVPAIFIRLQGCPVGCAWCDTKHTWDKLSDREVSLFSILAKTKESDKWGAASSEDLLAVINRQGYTARHVVITGGEPCIHDLMPLTDLLEKSGFSCQIETSGTHEVRCTPNTWVTVSPKVNMRGGYDVLSQALERANEIKHPVGRVRDIEALDELLATLSDDKPRVIALQPISQKEDATRLCIETCIARNWRLSMQTHKYLNIA
>NZ_CP044961.1|WP_000036734.1|3092193_3093492_-|phosphopyruvate-hydratase
MSKIVKVIGREIIDSRGNPTVEAEVHLEGGFVGMAAAPSGASTGSREALELRDGDKSRFLGKGVTKAVGAVNGPIAQAILGKDAKDQAGIDKIMIDLDGTENKSNFGANAILAVSLANAKAAAAAKGMPLYEHIAELNGTPGKYSMPVPMMNIINGGEHADNNVDIQEFMIQPVGAKTVKEAIRMGSEVFHHLAKVLKGKGMNTAVGDEGGYAPNLGSNAEALAVIAEAVKAAGYELGKDITLAMDCAASEFYKDGKYVLAGEGNKAFTSEEFTHFLEELTKQYPIVSIEDGLDESDWDGFAYQTKVLGDKIQLVGDDLFVTNTKILKEGIEKGIANSILIKFNQIGSLTETLAAIKMAKDAGYTAVISHRSGETEDATIADLAVGTAAGQIKTGSMSRSDRVAKYNQLIRIEEALGEKAPYNGRKEIKGQA
>NZ_CP044961.1|WP_000210863.1|3093574_3095212_-|CTP-synthase-(glutamine-hydrolyzing)
MTTNYIFVTGGVVSSLGKGIAAASLAAILEARGLNVTIMKLDPYINVDPGTMSPIQHGEVFVTEDGAETDLDLGHYERFIRTKMSRRNNFTTGRIYSDVLRKERRGDYLGATVQVIPHITNAIKERVLEGGEGHDVVLVEIGGTVGDIESLPFLEAIRQLAVDIGREHALFMHLTLVPYLAAAGEVKTKPTQHSVKELLSIGIQPDILICRSDRAVPANERAKIALFCNVPEKAVISMKDVDSIYKIPGLLKSQGLDDYICKRFSLNCPEANLSEWEQVIYEEANPAGEVTIGMVGKYIELPDAYKSVIEALKHGGLKNRVTVNIKLIDSQDVETRGVEILKDLDAILIPGGFGYRGVEGKIATARYARENNIPYLGICLGMQVALIEFARNVAGMDNANSTEFVPDCKYPVVALITEWRDEDGNVEVRSEKSDLGGTMRLGAQQCQLSDDSLVRQLYGASTIVERHRHRYEVNNMLLKQIEAAGLRVAGRSGDDQLVEIIEVPNHPWFVACQFHPEFTSTPRDGHPLFAGFVKAANEHQKRQAK
>NZ_CP044961.1|WP_000210449.1|3095439_3096240_-|nucleoside-triphosphate-pyrophosphohydrolase
MTTNHQIDRLLTLMQRLRDPENGCPWDKEQTFASIAPYTLEETYEVLDAIAREDFDDLRGELGDLLFQVVFYAQMAQEEGRFDFNDICAAISDKLERRHPHVFGELSADNSEEALVRWEQIKTEERAQKAQHSALDDIPRSFPALMRAQKIQKRCSNVGFDWTTLGPVVDKVYEEIDEVMFEARQAVVDQAKLEEEMGDLLFATVNMARHLGTKAELALQKANDKFERRFREVERIVAARGLEMTGVDLETMEEVWQEVKRQEIDL
>NZ_CP044961.1|WP_024144041.1|3097007_3097304_-|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin
MRMVKLTPKASEDLENIWHYGWQHFGEIQADRYINHLSEIFSIMSANNIGTPRPELGEYIYALPFKRHIIYFIQSVTEVIVIRILSQNQDTGKHVNWL
>NZ_CP044961.1|WP_000480218.1|3097269_3097626_-|type-II-toxin-antitoxin-system-ParD-family-antitoxin
MFLTYISFPVYSYVRFILTVEAVMARTMTVDLGDELREFIESLIESGDYRTQSEVIRESLRLLREKQAESRLQALRELLAEGLNSGEPQAWEKDAFLRKVKTGMIKPDENGKINAKGQ
>NZ_CP044961.1|WP_000226838.1|3097709_3099944_-|GTP-diphosphokinase
MVAVRSAHINKAGEFDPKKWIASLGISSQQSCERLAETWAYCLQQTQGHPDADLLLWRGVEMVEILSTLSMDIDTLRAALLFPLADANVVSEDVLRESVGKSIVTLIHGVRDMAAIRQLNATHNDSVSSEQVDNVRRMLLAMVDDFRCVVIKLAERIAHLREVKEAPEDERVLAAKECTNIYAPLANRLGIGQLKWELEDYCFRYLHPAEYKRIAKLLHERRLDREHYIEEFVGHLRAEMKNEGVQAEVYGRPKHIYSIWRKMQKKHLAFDELFDVRAVRIVAERLQDCYAALGIVHTHYRHLPDEFDDYVANPKPNGYQSIHTVVLGPGGKTVEIQIRTKQMHEDAELGVAAHWKYKEGAASGGVRSGHEDRIAWLRKLIAWQEEMADSGEMLDEVRSQVFDDRVYVFTPKGDVVDLPAGSTPLDFAYHIHSDVGHRCIGAKIGGRIVPFTYQLQMGDQIEIITQKQPNPSRDWLNPNLGYVTTSRGRSKIHAWFRKQDRDKNIQAGRQILDDELAHLGISLKEAEKHLLPRYNFNELEELLAAIGGGDIRLNQMVNFLQSQFNKPSAEEQDAAALKQLQQKTYAPQNRRKDDGRVVVEGVGNLMHHIARCCQPIPGDEIVGFITQGRGISVHRADCEQLAELRSHAPERIVEAVWGESYSAGYSLVVRVQANDRSGLLRDITTILANEKVNVLGVASRSDIKQQIATIDMTIEIYNLQVLGRVLGKLNQVPDVIDARRLHGG
>NZ_CP044961.1|WP_000046849.1|3099995_3101291_-|23S-rRNA-(uracil(1939)-C(5))-methyltransferase-RlmD
MAQFYSAKRRVTTRQIITVKVNDLDSFGQGVARHNGKALFIPGLLPEESAEVIITEDKKQFARARVSRRLNDSPERETPRCPHFGVCGGCQQQHVSIALQQRSKSAALARLMKHEVNDIIAGAPWGYRRRARLSLNCPPDKPLQMGFRKAGSSDIVNVEQCPVLAPQLAALLPRIRACLASLHGTRHLGHVELVQAGSGTLMILRHTAPLSAADKEKLERFSHSEGLSLFLAPFSEILETVSGEAPWYDSHGLRLAFSPRDFIQVNEAVNQQMVARALEWLDVRAEDRVLDLFCGMGNFTLPLATRAASVIGVEGVPALVEKGRENAIRNGLHNVTFFHENLEEDVTKQPWAKNGFDKVLLDPARAGATGVMRHIIKLKPIRIVYVSCNPATLARDSEALVNAGYEVTRLAMLDMFPHTGHLESMVLFERM
>NZ_CP044961.1|WP_000186400.1|3101348_3104105_+|two-component-sensor-histidine-kinase-BarA
MTNYSLRARMMILILAPTVLIGLLLSIFFVVHRYNDLQRQLEDAGASIIEPLAVSSEYGMNLQNRESIGQLISVLHRRHSDIVRAISVYDDHNRLFVTSNFHLDPSQMQLPAGAPFPRRLSVDRHGDIMILRTPIISESYSPDESAIADAKNTKNMLGYVALELDLKSVRLQQYKEIFISSVMMLFCIGIALIFGWRLMRDVTGPIRNMVNTVDRIRRGQLDSRVEGFMLGELDMLKNGINSMAMSLAAYHEEMQHNIDQATSDLRETLEQMEIQNVELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELNPTQRDHLNTIERSANNLLAIINDVLDFSKLEAGKLILESIPFPLRNTLDEVVTLLAHSSHDKGLELTLNIKNDVPDNVIGDPLRLQQVITNLVGNAIKFTESGNIDILVEKRALSNTKVQIEVQIRDTGIGIPERDQSRLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWFHINLDLNPNVIIDGPSTACLAGKRLAYVEPNATAAQCTLDLLSDTPVEVVYSPTFSALPLAHYDIMILSVPVTFREPLTMQHERLAKAASMTDFLLLALPCHAQINAEKLKQGGAAACLLKPLTSTRLLPALTEYCQLNHHPEPLLMDTSKITMTVMAVDDNPANLKLIGALLEDKVQHVELCDSGHQAVDRAKQMQFDLILMDIQMPDMDGIRACELIHQLPHQQQTPVIAVTAHAMAGQKEKLLSAGMNDYLAKPIEEEKLHNLLLRYKPGANVAARLMAPEPAEFIFNPNATLDWQLALRQAAGKPDLARDMLQMLIDFLPEVRNKIEEQLVGENPNGLVDLVHKLHGSCGYSGVPRMKNLCQLIEQQLRSGVHEEELEPEFLELLDEMDNVAREAKKILG
>NZ_CP044961.1|WP_000706479.1|3104148_3105291_-|glycerate-kinase
MKIVIAPDSYKESLSALEVATAIEQGFREIWPDADYLKLPLADGGEGTVEAMVEATAGRIVHVEVTGPLGHRVNAFYGLSGDARSAFIEMAAASGLEQVPPAQRDPLKTTSWGTGELIRHALDAGVEHIIIGIGGSATNDGGAGMVQALGARLRDAQGNDIAQGGIGLETLASIDISGLDKRLSACHIEVACDVTNPLTGKEGASAVFGPQKGATPEMIERLDTALTRYAHLIARDLHVDVLDLAGGGAAGGMGAALYAFCGAQLRRGIEIVTDALHLEACLADADLVITGEGRIDSQTIHGKVPIGVANIAKRYNKPVIGIAGSLTADVSVVHEHGLDAVFSVIYTICTLEDALKNASENVRMTARNVAATLKAGQQLR

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NZ_CP044961_1	1.56\|3073406\|32\|NZ_CP044961\|CRT,CRISPRCasFinder,PILER-CR	3073406-3073437	32	NZ_CP044961.1	2242600-2242631	0	1.0

1. spacer 1.56|3073406|32|NZ_CP044961|CRT,CRISPRCasFinder,PILER-CR matches to position: 2242600-2242631, mismatch: 0, identity: 1.0

tgtaacagtccgtcgttaatcagcgcggtggg	CRISPR spacer
tgtaacagtccgtcgttaatcagcgcggtggg	Protospacer
********************************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP044961_1	1.22\|3072261\|33\|NZ_CP044961\|PILER-CR	3072261-3072293	33	CP051275	Salmonella phage SW-37, complete genome	24294-24326	1	0.97
NZ_CP044961_1	1.22\|3072261\|33\|NZ_CP044961\|PILER-CR	3072261-3072293	33	KC139516	Salmonella phage FSL SP-016, partial genome	43971-44003	1	0.97
NZ_CP044961_1	1.37\|3072246\|32\|NZ_CP044961\|CRT,CRISPRCasFinder	3072246-3072277	32	CP051275	Salmonella phage SW-37, complete genome	24295-24326	1	0.969
NZ_CP044961_1	1.37\|3072246\|32\|NZ_CP044961\|CRT,CRISPRCasFinder	3072246-3072277	32	KC139516	Salmonella phage FSL SP-016, partial genome	43971-44002	1	0.969
NZ_CP044961_2	2.5\|3089870\|32\|NZ_CP044961\|CRISPRCasFinder,CRT,PILER-CR	3089870-3089901	32	NZ_CP034699	Salmonella enterica subsp. enterica serovar Karamoja strain RSE40 plasmid pRSE40, complete sequence	177960-177991	1	0.969
NZ_CP044961_2	2.5\|3089870\|32\|NZ_CP044961\|CRISPRCasFinder,CRT,PILER-CR	3089870-3089901	32	NZ_CP034710	Salmonella enterica subsp. enterica serovar Karamoja strain RSE21 plasmid pRSE21, complete sequence	67131-67162	1	0.969
NZ_CP044961_2	2.11\|3090237\|32\|NZ_CP044961\|CRISPRCasFinder,CRT,PILER-CR	3090237-3090268	32	NZ_CP030204	Salmonella enterica strain SA20083530 plasmid pSA20083530.1, complete sequence	130783-130814	2	0.938
NZ_CP044961_1	1.37\|3072246\|32\|NZ_CP044961\|CRT,CRISPRCasFinder	3072246-3072277	32	JQ182729	Enterobacterial phage mEp390, complete genome	23951-23982	3	0.906
NZ_CP044961_1	1.19\|3072082\|28\|NZ_CP044961\|PILER-CR	3072082-3072109	28	NC_009927	Acaryochloris marina MBIC11017 plasmid pREB2, complete sequence	337987-338014	5	0.821
NZ_CP044961_1	1.48\|3072917\|32\|NZ_CP044961\|CRT,CRISPRCasFinder	3072917-3072948	32	NC_008269	Rhodococcus jostii RHA1 plasmid pRHL1, complete sequence	509804-509835	5	0.844
NZ_CP044961_1	1.24\|3072383\|33\|NZ_CP044961\|PILER-CR	3072383-3072415	33	MT774487	Salmonella phage MG40, complete genome	21745-21777	6	0.818
NZ_CP044961_1	1.33\|3072932\|33\|NZ_CP044961\|PILER-CR	3072932-3072964	33	NC_008269	Rhodococcus jostii RHA1 plasmid pRHL1, complete sequence	509803-509835	6	0.818
NZ_CP044961_1	1.39\|3072368\|32\|NZ_CP044961\|CRT,CRISPRCasFinder	3072368-3072399	32	MT774487	Salmonella phage MG40, complete genome	21746-21777	6	0.812
NZ_CP044961_1	1.48\|3072917\|32\|NZ_CP044961\|CRT,CRISPRCasFinder	3072917-3072948	32	NZ_CP025013	Rhizobium leguminosarum strain Norway plasmid pRLN1, complete sequence	336397-336428	6	0.812
NZ_CP044961_1	1.48\|3072917\|32\|NZ_CP044961\|CRT,CRISPRCasFinder	3072917-3072948	32	NC_019201	Streptomyces sp. x4(2010) plasmid pTSC1, complete sequence	254-285	6	0.812
NZ_CP044961_2	2.13\|3090359\|32\|NZ_CP044961\|CRISPRCasFinder,CRT,PILER-CR	3090359-3090390	32	NC_019849	Sinorhizobium meliloti GR4 plasmid pRmeGR4d, complete sequence	850282-850313	6	0.812
NZ_CP044961_2	2.13\|3090359\|32\|NZ_CP044961\|CRISPRCasFinder,CRT,PILER-CR	3090359-3090390	32	NC_003078	Sinorhizobium meliloti 1021 plasmid pSymB, complete sequence	887728-887759	6	0.812
NZ_CP044961_2	2.13\|3090359\|32\|NZ_CP044961\|CRISPRCasFinder,CRT,PILER-CR	3090359-3090390	32	NZ_CP019586	Sinorhizobium meliloti strain CCMM B554 (FSM-MA) plasmid pSymB, complete sequence	856045-856076	6	0.812
NZ_CP044961_2	2.13\|3090359\|32\|NZ_CP044961\|CRISPRCasFinder,CRT,PILER-CR	3090359-3090390	32	NC_017326	Sinorhizobium meliloti SM11 plasmid pSmeSM11d, complete sequence	835457-835488	6	0.812
NZ_CP044961_2	2.13\|3090359\|32\|NZ_CP044961\|CRISPRCasFinder,CRT,PILER-CR	3090359-3090390	32	NZ_CP021799	Sinorhizobium meliloti strain USDA1106 plasmid psymB, complete sequence	953948-953979	6	0.812
NZ_CP044961_2	2.13\|3090359\|32\|NZ_CP044961\|CRISPRCasFinder,CRT,PILER-CR	3090359-3090390	32	NC_017323	Sinorhizobium meliloti BL225C plasmid pSINMEB02, complete sequence	431895-431926	6	0.812
NZ_CP044961_2	2.13\|3090359\|32\|NZ_CP044961\|CRISPRCasFinder,CRT,PILER-CR	3090359-3090390	32	NZ_CP009146	Sinorhizobium meliloti strain RMO17 plasmid pSymB, complete sequence	843687-843718	6	0.812
NZ_CP044961_2	2.13\|3090359\|32\|NZ_CP044961\|CRISPRCasFinder,CRT,PILER-CR	3090359-3090390	32	NC_018701	Sinorhizobium meliloti Rm41 plasmid pSYMB, complete sequence	833486-833517	6	0.812
NZ_CP044961_2	2.13\|3090359\|32\|NZ_CP044961\|CRISPRCasFinder,CRT,PILER-CR	3090359-3090390	32	NZ_CP021828	Sinorhizobium meliloti strain KH35c plasmid psymB, complete sequence	457962-457993	6	0.812
NZ_CP044961_2	2.13\|3090359\|32\|NZ_CP044961\|CRISPRCasFinder,CRT,PILER-CR	3090359-3090390	32	NZ_CP021802	Sinorhizobium meliloti strain USDA1021 plasmid psymB, complete sequence	1502459-1502490	6	0.812
NZ_CP044961_2	2.13\|3090359\|32\|NZ_CP044961\|CRISPRCasFinder,CRT,PILER-CR	3090359-3090390	32	NZ_CP021820	Sinorhizobium meliloti strain M162 plasmid psymB, complete sequence	1188725-1188756	6	0.812
NZ_CP044961_2	2.13\|3090359\|32\|NZ_CP044961\|CRISPRCasFinder,CRT,PILER-CR	3090359-3090390	32	NZ_CP021831	Sinorhizobium meliloti strain HM006 plasmid psymB, complete sequence	1094940-1094971	6	0.812
NZ_CP044961_2	2.13\|3090359\|32\|NZ_CP044961\|CRISPRCasFinder,CRT,PILER-CR	3090359-3090390	32	NZ_CP021823	Sinorhizobium meliloti strain KH46 plasmid psymB, complete sequence	574071-574102	6	0.812
NZ_CP044961_2	2.13\|3090359\|32\|NZ_CP044961\|CRISPRCasFinder,CRT,PILER-CR	3090359-3090390	32	NZ_CP021814	Sinorhizobium meliloti strain M270 plasmid psymB, complete sequence	758103-758134	6	0.812
NZ_CP044961_2	2.13\|3090359\|32\|NZ_CP044961\|CRISPRCasFinder,CRT,PILER-CR	3090359-3090390	32	NZ_CP021795	Sinorhizobium meliloti strain USDA1157 plasmid psymB, complete sequence	92938-92969	6	0.812
NZ_CP044961_2	2.13\|3090359\|32\|NZ_CP044961\|CRISPRCasFinder,CRT,PILER-CR	3090359-3090390	32	NZ_CP021810	Sinorhizobium meliloti strain Rm41 plasmid psymB, complete sequence	1622461-1622492	6	0.812
NZ_CP044961_2	2.13\|3090359\|32\|NZ_CP044961\|CRISPRCasFinder,CRT,PILER-CR	3090359-3090390	32	NZ_CP021806	Sinorhizobium meliloti strain T073 plasmid psymB, complete sequence	174090-174121	6	0.812
NZ_CP044961_2	2.13\|3090359\|32\|NZ_CP044961\|CRISPRCasFinder,CRT,PILER-CR	3090359-3090390	32	NZ_CP021218	Sinorhizobium meliloti RU11/001 plasmid pSymB, complete sequence	996227-996258	6	0.812
NZ_CP044961_2	2.13\|3090359\|32\|NZ_CP044961\|CRISPRCasFinder,CRT,PILER-CR	3090359-3090390	32	NZ_CP026527	Sinorhizobium meliloti strain AK21 plasmid pSymB, complete sequence	856529-856560	6	0.812
NZ_CP044961_2	2.13\|3090359\|32\|NZ_CP044961\|CRISPRCasFinder,CRT,PILER-CR	3090359-3090390	32	NZ_CP019484	Sinorhizobium meliloti strain B401 plasmid pSymB, complete sequence	1026857-1026888	6	0.812
NZ_CP044961_2	2.13\|3090359\|32\|NZ_CP044961\|CRISPRCasFinder,CRT,PILER-CR	3090359-3090390	32	NZ_CP019487	Sinorhizobium meliloti strain B399 plasmid pSym, complete sequence	801217-801248	6	0.812
NZ_CP044961_2	2.13\|3090359\|32\|NZ_CP044961\|CRISPRCasFinder,CRT,PILER-CR	3090359-3090390	32	NC_020560	Sinorhizobium meliloti 2011 plasmid pSymB, complete sequence	887731-887762	6	0.812
NZ_CP044961_1	1.9\|3072020\|32\|NZ_CP044961\|CRISPRCasFinder,CRT	3072020-3072051	32	NZ_CP013929	Alteromonas mediterranea strain UM8 plasmid pAMEDUM8_300, complete sequence	188177-188208	7	0.781
NZ_CP044961_1	1.9\|3072020\|32\|NZ_CP044961\|CRISPRCasFinder,CRT	3072020-3072051	32	CP013931	Alteromonas mediterranea strain U10 plasmid pAMED10_300, complete sequence	192938-192969	7	0.781
NZ_CP044961_1	1.9\|3072020\|32\|NZ_CP044961\|CRISPRCasFinder,CRT	3072020-3072051	32	NC_019394	Alteromonas mediterranea DE1 plasmid pAMDE1, complete sequence	188204-188235	7	0.781
NZ_CP044961_1	1.24\|3072383\|33\|NZ_CP044961\|PILER-CR	3072383-3072415	33	JQ288021	Salmonella phage SPN3UB, complete genome	39452-39484	7	0.788
NZ_CP044961_1	1.24\|3072383\|33\|NZ_CP044961\|PILER-CR	3072383-3072415	33	MH370364	Salmonella phage S107, complete genome	29958-29990	7	0.788
NZ_CP044961_1	1.24\|3072383\|33\|NZ_CP044961\|PILER-CR	3072383-3072415	33	MH370382	Salmonella phage S135, complete genome	29958-29990	7	0.788
NZ_CP044961_1	1.24\|3072383\|33\|NZ_CP044961\|PILER-CR	3072383-3072415	33	MH370383	Salmonella phage S137, complete genome	29958-29990	7	0.788
NZ_CP044961_1	1.33\|3072932\|33\|NZ_CP044961\|PILER-CR	3072932-3072964	33	NZ_CP025013	Rhizobium leguminosarum strain Norway plasmid pRLN1, complete sequence	336396-336428	7	0.788
NZ_CP044961_1	1.33\|3072932\|33\|NZ_CP044961\|PILER-CR	3072932-3072964	33	MT758688	Mycobacterium phage CELFI, complete genome	74684-74716	7	0.788
NZ_CP044961_1	1.33\|3072932\|33\|NZ_CP044961\|PILER-CR	3072932-3072964	33	MH509446	Gordonia phage DelRio, complete genome	6228-6260	7	0.788
NZ_CP044961_1	1.39\|3072368\|32\|NZ_CP044961\|CRT,CRISPRCasFinder	3072368-3072399	32	JQ288021	Salmonella phage SPN3UB, complete genome	39452-39483	7	0.781
NZ_CP044961_1	1.39\|3072368\|32\|NZ_CP044961\|CRT,CRISPRCasFinder	3072368-3072399	32	MH370364	Salmonella phage S107, complete genome	29959-29990	7	0.781
NZ_CP044961_1	1.39\|3072368\|32\|NZ_CP044961\|CRT,CRISPRCasFinder	3072368-3072399	32	MH370382	Salmonella phage S135, complete genome	29959-29990	7	0.781
NZ_CP044961_1	1.39\|3072368\|32\|NZ_CP044961\|CRT,CRISPRCasFinder	3072368-3072399	32	MH370383	Salmonella phage S137, complete genome	29959-29990	7	0.781
NZ_CP044961_1	1.41\|3072490\|32\|NZ_CP044961\|CRT,CRISPRCasFinder	3072490-3072521	32	NZ_CP054841	Acidovorax sp. 16-35-5 plasmid unnamed1, complete sequence	535406-535437	7	0.781
NZ_CP044961_1	1.42\|3072551\|32\|NZ_CP044961\|CRT,CRISPRCasFinder	3072551-3072582	32	NZ_CP054841	Acidovorax sp. 16-35-5 plasmid unnamed1, complete sequence	535406-535437	7	0.781
NZ_CP044961_1	1.44\|3072673\|32\|NZ_CP044961\|CRT,CRISPRCasFinder	3072673-3072704	32	NZ_CP024773	Bacillus thuringiensis LM1212 plasmid pLM2, complete sequence	29048-29079	7	0.781
NZ_CP044961_1	1.44\|3072673\|32\|NZ_CP044961\|CRT,CRISPRCasFinder	3072673-3072704	32	NZ_CP041075	Bacillus tropicus strain LM1212-W3 plasmid p2, complete sequence	142294-142325	7	0.781
NZ_CP044961_1	1.48\|3072917\|32\|NZ_CP044961\|CRT,CRISPRCasFinder	3072917-3072948	32	MH509446	Gordonia phage DelRio, complete genome	6223-6254	7	0.781
NZ_CP044961_1	1.48\|3072917\|32\|NZ_CP044961\|CRT,CRISPRCasFinder	3072917-3072948	32	MH509446	Gordonia phage DelRio, complete genome	6229-6260	7	0.781
NZ_CP044961_1	1.48\|3072917\|32\|NZ_CP044961\|CRT,CRISPRCasFinder	3072917-3072948	32	MT758688	Mycobacterium phage CELFI, complete genome	74684-74715	7	0.781
NZ_CP044961_1	1.48\|3072917\|32\|NZ_CP044961\|CRT,CRISPRCasFinder	3072917-3072948	32	NC_006363	Nocardia farcinica IFM 10152 plasmid pNF2, complete sequence	85980-86011	7	0.781
NZ_CP044961_1	1.48\|3072917\|32\|NZ_CP044961\|CRT,CRISPRCasFinder	3072917-3072948	32	NZ_LN868942	Nocardia farcinica strain NCTC11134 plasmid 5, complete sequence	39475-39506	7	0.781
NZ_CP044961_1	1.48\|3072917\|32\|NZ_CP044961\|CRT,CRISPRCasFinder	3072917-3072948	32	NZ_CP031420	Nocardia farcinica strain W6977 plasmid unnamed2, complete sequence	10466-10497	7	0.781
NZ_CP044961_1	1.48\|3072917\|32\|NZ_CP044961\|CRT,CRISPRCasFinder	3072917-3072948	32	NZ_CP029452	Sinorhizobium fredii CCBAU 25509 plasmid pSF25509b, complete sequence	619925-619956	7	0.781
NZ_CP044961_1	1.48\|3072917\|32\|NZ_CP044961\|CRT,CRISPRCasFinder	3072917-3072948	32	NC_008697	Nocardioides sp. JS614 plasmid pNOCA01, complete sequence	117019-117050	7	0.781
NZ_CP044961_1	1.51\|3073101\|32\|NZ_CP044961\|CRT,CRISPRCasFinder,PILER-CR	3073101-3073132	32	MN693183	Marine virus AFVG_25M360, complete genome	30035-30066	7	0.781
NZ_CP044961_1	1.56\|3073406\|32\|NZ_CP044961\|CRT,CRISPRCasFinder,PILER-CR	3073406-3073437	32	NZ_CP014127	Pantoea vagans strain FDAARGOS_160 plasmid unnamed2, complete sequence	282797-282828	7	0.781
NZ_CP044961_1	1.56\|3073406\|32\|NZ_CP044961\|CRT,CRISPRCasFinder,PILER-CR	3073406-3073437	32	NZ_CP028350	Pantoea vagans strain PV989 plasmid pPV989-508, complete sequence	226270-226301	7	0.781
NZ_CP044961_1	1.56\|3073406\|32\|NZ_CP044961\|CRT,CRISPRCasFinder,PILER-CR	3073406-3073437	32	NC_014258	Pantoea vagans C9-1 plasmid pPag3, complete sequence	345037-345068	7	0.781
NZ_CP044961_1	1.56\|3073406\|32\|NZ_CP044961\|CRT,CRISPRCasFinder,PILER-CR	3073406-3073437	32	NZ_CP038854	Pantoea vagans strain LMG 24199 plasmid unnamed1, complete sequence	185633-185664	7	0.781
NZ_CP044961_2	2.13\|3090359\|32\|NZ_CP044961\|CRISPRCasFinder,CRT,PILER-CR	3090359-3090390	32	NZ_CP030829	Neorhizobium sp. NCHU2750 plasmid pNCHU2750b, complete sequence	360377-360408	7	0.781
NZ_CP044961_2	2.22\|3090908\|32\|NZ_CP044961\|CRISPRCasFinder,CRT,PILER-CR	3090908-3090939	32	NC_011366	Rhizobium leguminosarum bv. trifolii WSM2304 plasmid pRLG202, complete sequence	208454-208485	7	0.781
NZ_CP044961_2	2.22\|3090908\|32\|NZ_CP044961\|CRISPRCasFinder,CRT,PILER-CR	3090908-3090939	32	NC_017958	Tistrella mobilis KA081020-065 plasmid pTM3, complete sequence	449563-449594	7	0.781
NZ_CP044961_2	2.22\|3090908\|32\|NZ_CP044961\|CRISPRCasFinder,CRT,PILER-CR	3090908-3090939	32	NZ_CP035001	Rhizobium acidisoli strain FH23 plasmid pRapFH23c, complete sequence	167100-167131	7	0.781
NZ_CP044961_1	1.2\|3071593\|32\|NZ_CP044961\|CRISPRCasFinder,CRT	3071593-3071624	32	MN855803	Bacteriophage sp. isolate 108, partial genome	10057-10088	8	0.75
NZ_CP044961_1	1.8\|3071959\|32\|NZ_CP044961\|CRISPRCasFinder,CRT	3071959-3071990	32	NZ_CP016489	Synechococcus sp. PCC 8807 plasmid unnamed6, complete sequence	8862-8893	8	0.75
NZ_CP044961_1	1.8\|3071959\|32\|NZ_CP044961\|CRISPRCasFinder,CRT	3071959-3071990	32	NZ_CP016476	Synechococcus sp. PCC 7003 plasmid unnamed2, complete sequence	151600-151631	8	0.75
NZ_CP044961_1	1.29\|3072688\|33\|NZ_CP044961\|PILER-CR	3072688-3072720	33	NZ_CP041075	Bacillus tropicus strain LM1212-W3 plasmid p2, complete sequence	142293-142325	8	0.758
NZ_CP044961_1	1.29\|3072688\|33\|NZ_CP044961\|PILER-CR	3072688-3072720	33	NZ_CP024773	Bacillus thuringiensis LM1212 plasmid pLM2, complete sequence	29048-29080	8	0.758
NZ_CP044961_1	1.33\|3072932\|33\|NZ_CP044961\|PILER-CR	3072932-3072964	33	NC_008269	Rhodococcus jostii RHA1 plasmid pRHL1, complete sequence	509809-509841	8	0.758
NZ_CP044961_1	1.33\|3072932\|33\|NZ_CP044961\|PILER-CR	3072932-3072964	33	NC_006363	Nocardia farcinica IFM 10152 plasmid pNF2, complete sequence	85980-86012	8	0.758
NZ_CP044961_1	1.33\|3072932\|33\|NZ_CP044961\|PILER-CR	3072932-3072964	33	NZ_LN868942	Nocardia farcinica strain NCTC11134 plasmid 5, complete sequence	39475-39507	8	0.758
NZ_CP044961_1	1.33\|3072932\|33\|NZ_CP044961\|PILER-CR	3072932-3072964	33	NZ_CP031420	Nocardia farcinica strain W6977 plasmid unnamed2, complete sequence	10465-10497	8	0.758
NZ_CP044961_1	1.33\|3072932\|33\|NZ_CP044961\|PILER-CR	3072932-3072964	33	NZ_CP029452	Sinorhizobium fredii CCBAU 25509 plasmid pSF25509b, complete sequence	619924-619956	8	0.758
NZ_CP044961_1	1.43\|3072612\|32\|NZ_CP044961\|CRT,CRISPRCasFinder	3072612-3072643	32	NZ_CP016179	Vibrio breoganii strain FF50 plasmid unnamed1, complete sequence	203354-203385	8	0.75
NZ_CP044961_1	1.47\|3072856\|32\|NZ_CP044961\|CRT,CRISPRCasFinder	3072856-3072887	32	AP013976	Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C7-MedDCM-OCT-S26-C28, * SEQUENCING IN PROGRESS *	6246-6277	8	0.75
NZ_CP044961_1	1.47\|3072856\|32\|NZ_CP044961\|CRT,CRISPRCasFinder	3072856-3072887	32	JX536274	Uncultured Mediterranean phage MEDS5 group fosmid MedDCM-OCT-S15-C5, complete sequence	3959-3990	8	0.75
NZ_CP044961_1	1.48\|3072917\|32\|NZ_CP044961\|CRT,CRISPRCasFinder	3072917-3072948	32	NZ_CP025013	Rhizobium leguminosarum strain Norway plasmid pRLN1, complete sequence	336385-336416	8	0.75
NZ_CP044961_1	1.48\|3072917\|32\|NZ_CP044961\|CRT,CRISPRCasFinder	3072917-3072948	32	NC_008269	Rhodococcus jostii RHA1 plasmid pRHL1, complete sequence	509810-509841	8	0.75
NZ_CP044961_1	1.48\|3072917\|32\|NZ_CP044961\|CRT,CRISPRCasFinder	3072917-3072948	32	JQ807255	Environmental Halophage eHP-36, partial genome	3413-3444	8	0.75
NZ_CP044961_1	1.48\|3072917\|32\|NZ_CP044961\|CRT,CRISPRCasFinder	3072917-3072948	32	MH509446	Gordonia phage DelRio, complete genome	6235-6266	8	0.75
NZ_CP044961_1	1.48\|3072917\|32\|NZ_CP044961\|CRT,CRISPRCasFinder	3072917-3072948	32	NZ_CP029452	Sinorhizobium fredii CCBAU 25509 plasmid pSF25509b, complete sequence	619931-619962	8	0.75
NZ_CP044961_1	1.48\|3072917\|32\|NZ_CP044961\|CRT,CRISPRCasFinder	3072917-3072948	32	MK359319	Gordonia phage Parada, complete genome	5938-5969	8	0.75
NZ_CP044961_1	1.48\|3072917\|32\|NZ_CP044961\|CRT,CRISPRCasFinder	3072917-3072948	32	MK359319	Gordonia phage Parada, complete genome	5926-5957	8	0.75
NZ_CP044961_1	1.48\|3072917\|32\|NZ_CP044961\|CRT,CRISPRCasFinder	3072917-3072948	32	MK376958	Gordonia phage Brylie, complete genome	5938-5969	8	0.75
NZ_CP044961_1	1.48\|3072917\|32\|NZ_CP044961\|CRT,CRISPRCasFinder	3072917-3072948	32	MK376958	Gordonia phage Brylie, complete genome	5926-5957	8	0.75
NZ_CP044961_1	1.48\|3072917\|32\|NZ_CP044961\|CRT,CRISPRCasFinder	3072917-3072948	32	MH399781	Gordonia phage Nadeem, complete genome	5938-5969	8	0.75
NZ_CP044961_1	1.48\|3072917\|32\|NZ_CP044961\|CRT,CRISPRCasFinder	3072917-3072948	32	MH399781	Gordonia phage Nadeem, complete genome	5926-5957	8	0.75
NZ_CP044961_1	1.48\|3072917\|32\|NZ_CP044961\|CRT,CRISPRCasFinder	3072917-3072948	32	MK967392	Gordonia phage GrandSlam, complete genome	5971-6002	8	0.75
NZ_CP044961_1	1.48\|3072917\|32\|NZ_CP044961\|CRT,CRISPRCasFinder	3072917-3072948	32	MK967392	Gordonia phage GrandSlam, complete genome	5959-5990	8	0.75
NZ_CP044961_1	1.48\|3072917\|32\|NZ_CP044961\|CRT,CRISPRCasFinder	3072917-3072948	32	MK279893	Gordonia phage WheatThin, complete genome	5938-5969	8	0.75
NZ_CP044961_1	1.48\|3072917\|32\|NZ_CP044961\|CRT,CRISPRCasFinder	3072917-3072948	32	MK279893	Gordonia phage WheatThin, complete genome	5926-5957	8	0.75
NZ_CP044961_1	1.48\|3072917\|32\|NZ_CP044961\|CRT,CRISPRCasFinder	3072917-3072948	32	MT701595	Streptomyces phage Shaeky, complete genome	29602-29633	8	0.75
NZ_CP044961_1	1.48\|3072917\|32\|NZ_CP044961\|CRT,CRISPRCasFinder	3072917-3072948	32	NC_031247	Gordonia phage BetterKatz, complete genome	6191-6222	8	0.75
NZ_CP044961_1	1.48\|3072917\|32\|NZ_CP044961\|CRT,CRISPRCasFinder	3072917-3072948	32	NC_031247	Gordonia phage BetterKatz, complete genome	6179-6210	8	0.75
NZ_CP044961_1	1.48\|3072917\|32\|NZ_CP044961\|CRT,CRISPRCasFinder	3072917-3072948	32	MK305885	Gordonia phage Mulch, complete genome	5938-5969	8	0.75
NZ_CP044961_1	1.48\|3072917\|32\|NZ_CP044961\|CRT,CRISPRCasFinder	3072917-3072948	32	MK305885	Gordonia phage Mulch, complete genome	5926-5957	8	0.75
NZ_CP044961_1	1.48\|3072917\|32\|NZ_CP044961\|CRT,CRISPRCasFinder	3072917-3072948	32	NZ_CP014599	Yangia sp. CCB-MM3 plasmid unnamed3, complete sequence	68312-68343	8	0.75
NZ_CP044961_1	1.48\|3072917\|32\|NZ_CP044961\|CRT,CRISPRCasFinder	3072917-3072948	32	MG269973	TM7 phage DolZOral124_53_65, complete genome	38250-38281	8	0.75
NZ_CP044961_1	1.56\|3073406\|32\|NZ_CP044961\|CRT,CRISPRCasFinder,PILER-CR	3073406-3073437	32	MK524494	Mycobacterium phage Rabbs, complete genome	19994-20025	8	0.75
NZ_CP044961_1	1.56\|3073406\|32\|NZ_CP044961\|CRT,CRISPRCasFinder,PILER-CR	3073406-3073437	32	KX641266	Mycobacterium phage Terror, complete genome	20003-20034	8	0.75
NZ_CP044961_1	1.56\|3073406\|32\|NZ_CP044961\|CRT,CRISPRCasFinder,PILER-CR	3073406-3073437	32	NC_031102	Mycobacterium phage Sneeze, complete genome	19993-20024	8	0.75
NZ_CP044961_1	1.56\|3073406\|32\|NZ_CP044961\|CRT,CRISPRCasFinder,PILER-CR	3073406-3073437	32	KX641265	Mycobacterium phage Taheera, complete genome	20003-20034	8	0.75
NZ_CP044961_1	1.56\|3073406\|32\|NZ_CP044961\|CRT,CRISPRCasFinder,PILER-CR	3073406-3073437	32	NC_014811	Mycolicibacterium gilvum Spyr1 plasmid pMSPYR101, complete sequence	50736-50767	8	0.75
NZ_CP044961_2	2.8\|3090053\|32\|NZ_CP044961\|CRISPRCasFinder,CRT,PILER-CR	3090053-3090084	32	CP024685	Bacillus wiedmannii bv. thuringiensis strain FCC41 plasmid pFCC41-1-490K, complete sequence	135469-135500	8	0.75
NZ_CP044961_2	2.8\|3090053\|32\|NZ_CP044961\|CRISPRCasFinder,CRT,PILER-CR	3090053-3090084	32	NZ_CP031801	Klebsiella pneumoniae strain MSB1_8A-sc-2280397 plasmid unnamed1, complete sequence	11654-11685	8	0.75
NZ_CP044961_2	2.13\|3090359\|32\|NZ_CP044961\|CRISPRCasFinder,CRT,PILER-CR	3090359-3090390	32	NC_012811	Methylorubrum extorquens AM1 megaplasmid, complete sequence	43093-43124	8	0.75
NZ_CP044961_2	2.13\|3090359\|32\|NZ_CP044961\|CRISPRCasFinder,CRT,PILER-CR	3090359-3090390	32	NZ_CP053442	Rhizobium leguminosarum bv. trifolii strain CC275e plasmid pRltCC275eD, complete sequence	152052-152083	8	0.75
NZ_CP044961_2	2.14\|3090420\|32\|NZ_CP044961\|CRISPRCasFinder,CRT,PILER-CR	3090420-3090451	32	NZ_CP028348	Novosphingobium sp. THN1 plasmid pTHN, complete sequence	1098771-1098802	8	0.75
NZ_CP044961_2	2.14\|3090420\|32\|NZ_CP044961\|CRISPRCasFinder,CRT,PILER-CR	3090420-3090451	32	NZ_CP014128	Pantoea vagans strain FDAARGOS_160 plasmid unnamed3, complete sequence	160189-160220	8	0.75
NZ_CP044961_2	2.14\|3090420\|32\|NZ_CP044961\|CRISPRCasFinder,CRT,PILER-CR	3090420-3090451	32	NC_014561	Pantoea vagans C9-1 plasmid pPag1, complete sequence	156443-156474	8	0.75
NZ_CP044961_2	2.14\|3090420\|32\|NZ_CP044961\|CRISPRCasFinder,CRT,PILER-CR	3090420-3090451	32	NC_010553	Burkholderia ambifaria MC40-6 plasmid pBMC401, complete sequence	137983-138014	8	0.75
NZ_CP044961_2	2.16\|3090542\|32\|NZ_CP044961\|CRISPRCasFinder,CRT,PILER-CR	3090542-3090573	32	LQ277707	Sequence 2 from Patent WO2016071503	12422-12453	8	0.75
NZ_CP044961_2	2.16\|3090542\|32\|NZ_CP044961\|CRISPRCasFinder,CRT,PILER-CR	3090542-3090573	32	LZ998055	JP 2017534684-A/2: Phage Therapy	12422-12453	8	0.75
NZ_CP044961_2	2.17\|3090603\|32\|NZ_CP044961\|CRISPRCasFinder,CRT,PILER-CR	3090603-3090634	32	CP001770	Spirosoma linguale DSM 74 plasmid pSLIN01, complete sequence	145771-145802	8	0.75
NZ_CP044961_1	1.11\|3071594\|33\|NZ_CP044961\|PILER-CR	3071594-3071626	33	MN855803	Bacteriophage sp. isolate 108, partial genome	10056-10088	9	0.727
NZ_CP044961_1	1.33\|3072932\|33\|NZ_CP044961\|PILER-CR	3072932-3072964	33	MH509446	Gordonia phage DelRio, complete genome	6234-6266	9	0.727
NZ_CP044961_1	1.33\|3072932\|33\|NZ_CP044961\|PILER-CR	3072932-3072964	33	NZ_CP029452	Sinorhizobium fredii CCBAU 25509 plasmid pSF25509b, complete sequence	619930-619962	9	0.727
NZ_CP044961_1	1.33\|3072932\|33\|NZ_CP044961\|PILER-CR	3072932-3072964	33	MK359319	Gordonia phage Parada, complete genome	5937-5969	9	0.727
NZ_CP044961_1	1.33\|3072932\|33\|NZ_CP044961\|PILER-CR	3072932-3072964	33	MK376958	Gordonia phage Brylie, complete genome	5937-5969	9	0.727
NZ_CP044961_1	1.33\|3072932\|33\|NZ_CP044961\|PILER-CR	3072932-3072964	33	MH399781	Gordonia phage Nadeem, complete genome	5937-5969	9	0.727
NZ_CP044961_1	1.33\|3072932\|33\|NZ_CP044961\|PILER-CR	3072932-3072964	33	MK967392	Gordonia phage GrandSlam, complete genome	5970-6002	9	0.727
NZ_CP044961_1	1.33\|3072932\|33\|NZ_CP044961\|PILER-CR	3072932-3072964	33	MK279893	Gordonia phage WheatThin, complete genome	5937-5969	9	0.727
NZ_CP044961_1	1.33\|3072932\|33\|NZ_CP044961\|PILER-CR	3072932-3072964	33	MT701595	Streptomyces phage Shaeky, complete genome	29601-29633	9	0.727
NZ_CP044961_1	1.33\|3072932\|33\|NZ_CP044961\|PILER-CR	3072932-3072964	33	NC_031247	Gordonia phage BetterKatz, complete genome	6190-6222	9	0.727
NZ_CP044961_1	1.33\|3072932\|33\|NZ_CP044961\|PILER-CR	3072932-3072964	33	MK305885	Gordonia phage Mulch, complete genome	5937-5969	9	0.727
NZ_CP044961_1	1.39\|3072368\|32\|NZ_CP044961\|CRT,CRISPRCasFinder	3072368-3072399	32	MK448228	Klebsiella phage ST15-VIM1phi2.1, complete genome	32866-32897	9	0.719
NZ_CP044961_1	1.46\|3072795\|32\|NZ_CP044961\|CRT,CRISPRCasFinder	3072795-3072826	32	MT162468	Synechococcus phage S-H25, complete genome	69929-69960	9	0.719
NZ_CP044961_1	1.48\|3072917\|32\|NZ_CP044961\|CRT,CRISPRCasFinder	3072917-3072948	32	NZ_CP028537	Enterobacter hormaechei strain SCEH020042 plasmid pQnrB4_020042, complete sequence	45644-45675	9	0.719
NZ_CP044961_1	1.48\|3072917\|32\|NZ_CP044961\|CRT,CRISPRCasFinder	3072917-3072948	32	NZ_AP023191	Escherichia coli strain TUM18530 plasmid pMTY18530-1_lncHI2, complete sequence	47035-47066	9	0.719
NZ_CP044961_1	1.48\|3072917\|32\|NZ_CP044961\|CRT,CRISPRCasFinder	3072917-3072948	32	MN539017	Salmonella sp. strain PJM1 plasmid pPJM1, complete sequence	71637-71668	9	0.719
NZ_CP044961_1	1.48\|3072917\|32\|NZ_CP044961\|CRT,CRISPRCasFinder	3072917-3072948	32	MN539018	Salmonella sp. strain OYZ4 plasmid pOYZ4, complete sequence	121312-121343	9	0.719
NZ_CP044961_1	1.48\|3072917\|32\|NZ_CP044961\|CRT,CRISPRCasFinder	3072917-3072948	32	MT077888	Escherichia coli plasmid p65, complete sequence	47129-47160	9	0.719
NZ_CP044961_1	1.48\|3072917\|32\|NZ_CP044961\|CRT,CRISPRCasFinder	3072917-3072948	32	NC_009838	Escherichia coli APEC O1 plasmid pAPEC-O1-R, complete sequence	46533-46564	9	0.719
NZ_CP044961_1	1.48\|3072917\|32\|NZ_CP044961\|CRT,CRISPRCasFinder	3072917-3072948	32	NZ_CP044306	Escherichia coli strain C27A plasmid pC27A-CTX-M-55, complete sequence	130757-130788	9	0.719
NZ_CP044961_1	1.48\|3072917\|32\|NZ_CP044961\|CRT,CRISPRCasFinder	3072917-3072948	32	NZ_CP039170	Salmonella enterica subsp. enterica serovar Goldcoast strain Sal-5364 plasmid pSal-5364, complete sequence	69620-69651	9	0.719
NZ_CP044961_1	1.48\|3072917\|32\|NZ_CP044961\|CRT,CRISPRCasFinder	3072917-3072948	32	CP048299	Salmonella enterica subsp. enterica serovar Schwarzengrund strain WAPHL_SAL-A00527 plasmid pN1566-2, complete sequence	195977-196008	9	0.719
NZ_CP044961_1	1.48\|3072917\|32\|NZ_CP044961\|CRT,CRISPRCasFinder	3072917-3072948	32	CP048303	Salmonella enterica subsp. enterica serovar Schwarzengrund strain WAPHL-SAL-A00375 plasmid p28945-2, complete sequence	41265-41296	9	0.719
NZ_CP044961_1	1.48\|3072917\|32\|NZ_CP044961\|CRT,CRISPRCasFinder	3072917-3072948	32	NZ_CP037959	Salmonella enterica subsp. enterica serovar Goldcoast strain R18.0877 plasmid pR18.0877_278k, complete sequence	45076-45107	9	0.719
NZ_CP044961_1	1.48\|3072917\|32\|NZ_CP044961\|CRT,CRISPRCasFinder	3072917-3072948	32	NZ_CP039861	Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS014880 plasmid p16-6773.1, complete sequence	239710-239741	9	0.719
NZ_CP044961_1	1.48\|3072917\|32\|NZ_CP044961\|CRT,CRISPRCasFinder	3072917-3072948	32	NZ_CP048776	Salmonella enterica subsp. enterica serovar Agona strain SG17-135 plasmid pSG17-135-HI2, complete sequence	45076-45107	9	0.719
NZ_CP044961_1	1.48\|3072917\|32\|NZ_CP044961\|CRT,CRISPRCasFinder	3072917-3072948	32	NC_019114	Salmonella enterica subsp. enterica serovar Heidelberg plasmid pSH111_227, complete sequence	43326-43357	9	0.719
NZ_CP044961_1	1.48\|3072917\|32\|NZ_CP044961\|CRT,CRISPRCasFinder	3072917-3072948	32	NZ_AP023198	Escherichia coli strain TUM18780 plasmid pMTY18780-1_lncHI2, complete sequence	47035-47066	9	0.719
NZ_CP044961_1	1.48\|3072917\|32\|NZ_CP044961\|CRT,CRISPRCasFinder	3072917-3072948	32	NZ_CP043223	Salmonella enterica subsp. enterica serovar Bredeney strain SA20114778WT plasmid pET1.1-IncH, complete sequence	5926-5957	9	0.719
NZ_CP044961_1	1.48\|3072917\|32\|NZ_CP044961\|CRT,CRISPRCasFinder	3072917-3072948	32	NZ_CP043223	Salmonella enterica subsp. enterica serovar Bredeney strain SA20114778WT plasmid pET1.1-IncH, complete sequence	240147-240178	9	0.719
NZ_CP044961_1	1.48\|3072917\|32\|NZ_CP044961\|CRT,CRISPRCasFinder	3072917-3072948	32	NZ_CP027411	Salmonella enterica strain FDAARGOS_319 plasmid unnamed, complete sequence	73185-73216	9	0.719
NZ_CP044961_1	1.48\|3072917\|32\|NZ_CP044961\|CRT,CRISPRCasFinder	3072917-3072948	32	JQ807227	Environmental Halophage eHP-6, partial genome	2886-2917	9	0.719
NZ_CP044961_1	1.48\|3072917\|32\|NZ_CP044961\|CRT,CRISPRCasFinder	3072917-3072948	32	NZ_CP029452	Sinorhizobium fredii CCBAU 25509 plasmid pSF25509b, complete sequence	619919-619950	9	0.719
NZ_CP044961_1	1.48\|3072917\|32\|NZ_CP044961\|CRT,CRISPRCasFinder	3072917-3072948	32	NC_019201	Streptomyces sp. x4(2010) plasmid pTSC1, complete sequence	248-279	9	0.719
NZ_CP044961_2	2.10\|3090176\|32\|NZ_CP044961\|CRISPRCasFinder,CRT,PILER-CR	3090176-3090207	32	NZ_CP051686	Duganella sp. GN2-R2 plasmid unnamed1, complete sequence	45237-45268	9	0.719
NZ_CP044961_2	2.14\|3090420\|32\|NZ_CP044961\|CRISPRCasFinder,CRT,PILER-CR	3090420-3090451	32	NZ_CP045722	Pantoea eucalypti strain LMG 24197 plasmid unnamed2, complete sequence	332-363	9	0.719
NZ_CP044961_2	2.14\|3090420\|32\|NZ_CP044961\|CRISPRCasFinder,CRT,PILER-CR	3090420-3090451	32	NZ_CP022519	Pantoea vagans strain FBS135 plasmid pPant3, complete sequence	62976-63007	9	0.719
NZ_CP044961_2	2.14\|3090420\|32\|NZ_CP044961\|CRISPRCasFinder,CRT,PILER-CR	3090420-3090451	32	NZ_CP028351	Pantoea vagans strain PV989 plasmid pPV989-167, complete sequence	144976-145007	9	0.719
NZ_CP044961_2	2.18\|3090664\|32\|NZ_CP044961\|CRISPRCasFinder,CRT,PILER-CR	3090664-3090695	32	MN062720	Microbacterium phage FuzzBuster, complete genome	19374-19405	9	0.719
NZ_CP044961_2	2.19\|3090725\|32\|NZ_CP044961\|CRISPRCasFinder,CRT,PILER-CR	3090725-3090756	32	MN694645	Marine virus AFVG_250M761, complete genome	31050-31081	9	0.719
NZ_CP044961_2	2.22\|3090908\|32\|NZ_CP044961\|CRISPRCasFinder,CRT,PILER-CR	3090908-3090939	32	DQ674738	Aeromonas phage phiO18P, complete genome	15707-15738	9	0.719
NZ_CP044961_2	2.22\|3090908\|32\|NZ_CP044961\|CRISPRCasFinder,CRT,PILER-CR	3090908-3090939	32	NZ_CP031166	Euzebya sp. DY32-46 plasmid pEDY32-46I, complete sequence	380725-380756	9	0.719
NZ_CP044961_2	2.22\|3090908\|32\|NZ_CP044961\|CRISPRCasFinder,CRT,PILER-CR	3090908-3090939	32	NZ_CP022367	Azospirillum sp. TSH58 plasmid TSH58_p02, complete sequence	153785-153816	9	0.719
NZ_CP044961_2	2.23\|3090969\|32\|NZ_CP044961\|CRISPRCasFinder,CRT,PILER-CR	3090969-3091000	32	MN693046	Marine virus AFVG_25M413, complete genome	4323-4354	9	0.719
NZ_CP044961_2	2.23\|3090969\|32\|NZ_CP044961\|CRISPRCasFinder,CRT,PILER-CR	3090969-3091000	32	MN693008	Marine virus AFVG_117M9, complete genome	4316-4347	9	0.719
NZ_CP044961_1	1.1\|3071532\|32\|NZ_CP044961\|CRISPRCasFinder,CRT	3071532-3071563	32	NC_016113	Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCAT, complete sequence	1151729-1151760	10	0.688
NZ_CP044961_1	1.1\|3071532\|32\|NZ_CP044961\|CRISPRCasFinder,CRT	3071532-3071563	32	NC_017585	Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCATT, complete sequence	661429-661460	10	0.688
NZ_CP044961_1	1.32\|3072871\|33\|NZ_CP044961\|PILER-CR	3072871-3072903	33	NZ_CP020539	Sphingobium herbicidovorans strain MH plasmid pMSHV, complete sequence	53255-53287	10	0.697
NZ_CP044961_1	1.33\|3072932\|33\|NZ_CP044961\|PILER-CR	3072932-3072964	33	NZ_CP045074	Paracoccus kondratievae strain BJQ0001 plasmid unnamed1, complete sequence	452409-452441	10	0.697
NZ_CP044961_1	1.37\|3072246\|32\|NZ_CP044961\|CRT,CRISPRCasFinder	3072246-3072277	32	NZ_AP022571	Mycolicibacterium poriferae strain JCM 12603 plasmid pJCM12603, complete sequence	153476-153507	10	0.688
NZ_CP044961_1	1.46\|3072795\|32\|NZ_CP044961\|CRT,CRISPRCasFinder	3072795-3072826	32	LN681539	Clostridium phage phiCD505, complete genome	8933-8964	10	0.688
NZ_CP044961_1	1.46\|3072795\|32\|NZ_CP044961\|CRT,CRISPRCasFinder	3072795-3072826	32	JX145341	Clostridium phage phiMMP02, complete genome	8932-8963	10	0.688
NZ_CP044961_1	1.46\|3072795\|32\|NZ_CP044961\|CRT,CRISPRCasFinder	3072795-3072826	32	NC_011398	Clostridium phage phiCD27, complete genome	8924-8955	10	0.688
NZ_CP044961_1	1.46\|3072795\|32\|NZ_CP044961\|CRT,CRISPRCasFinder	3072795-3072826	32	NC_048642	Clostridium phage CDKM9, complete genome	8871-8902	10	0.688
NZ_CP044961_1	1.46\|3072795\|32\|NZ_CP044961\|CRT,CRISPRCasFinder	3072795-3072826	32	KX228400	Clostridium phage CDKM15, complete genome	9066-9097	10	0.688
NZ_CP044961_1	1.47\|3072856\|32\|NZ_CP044961\|CRT,CRISPRCasFinder	3072856-3072887	32	NZ_CP020539	Sphingobium herbicidovorans strain MH plasmid pMSHV, complete sequence	53255-53286	10	0.688
NZ_CP044961_1	1.48\|3072917\|32\|NZ_CP044961\|CRT,CRISPRCasFinder	3072917-3072948	32	NZ_KY689633	Escherichia coli strain 100R plasmid p100R, complete sequence	90192-90223	10	0.688
NZ_CP044961_1	1.48\|3072917\|32\|NZ_CP044961\|CRT,CRISPRCasFinder	3072917-3072948	32	NZ_KY689632	Escherichia coli strain 19-M12 plasmid p19M12, complete sequence	93444-93475	10	0.688
NZ_CP044961_1	1.48\|3072917\|32\|NZ_CP044961\|CRT,CRISPRCasFinder	3072917-3072948	32	NZ_CP045446	Salmonella enterica subsp. enterica serovar Schwarzengrund strain 9355 plasmid p280_9355, complete sequence	47441-47472	10	0.688
NZ_CP044961_1	1.48\|3072917\|32\|NZ_CP044961\|CRT,CRISPRCasFinder	3072917-3072948	32	NZ_KU743384	Escherichia coli strain SA26 plasmid pSA26-MCR-1, complete sequence	181822-181853	10	0.688
NZ_CP044961_1	1.48\|3072917\|32\|NZ_CP044961\|CRT,CRISPRCasFinder	3072917-3072948	32	NZ_KU254578	Escherichia coli strain YD786 plasmid pYD786-1, complete sequence	164955-164986	10	0.688
NZ_CP044961_1	1.48\|3072917\|32\|NZ_CP044961\|CRT,CRISPRCasFinder	3072917-3072948	32	NZ_KX129782	Escherichia coli strain S38 plasmid pS38, complete sequence	46429-46460	10	0.688
NZ_CP044961_1	1.48\|3072917\|32\|NZ_CP044961\|CRT,CRISPRCasFinder	3072917-3072948	32	NZ_CP015833	Escherichia coli O157 strain 180-PT54 plasmid unnamed, complete sequence	45081-45112	10	0.688
NZ_CP044961_1	1.48\|3072917\|32\|NZ_CP044961\|CRT,CRISPRCasFinder	3072917-3072948	32	LT221036	Yersinia pseudotuberculosis strain Yps.F1, plasmid pYps.F1 complete sequence	41890-41921	10	0.688
NZ_CP044961_1	1.48\|3072917\|32\|NZ_CP044961\|CRT,CRISPRCasFinder	3072917-3072948	32	CP019195	Salmonella enterica subsp. enterica serovar Senftenberg str. ATCC 43845 plasmid pATCC43845, complete sequence	98508-98539	10	0.688
NZ_CP044961_1	1.48\|3072917\|32\|NZ_CP044961\|CRT,CRISPRCasFinder	3072917-3072948	32	NZ_CP045449	Salmonella enterica subsp. enterica serovar Schwarzengrund strain 12888 plasmid p280_12888, complete sequence	47440-47471	10	0.688
NZ_CP044961_1	1.48\|3072917\|32\|NZ_CP044961\|CRT,CRISPRCasFinder	3072917-3072948	32	NZ_CP015096	Pelagibaca abyssi strain JLT2014 plasmid pPABY8, complete sequence	24746-24777	10	0.688
NZ_CP044961_1	1.48\|3072917\|32\|NZ_CP044961\|CRT,CRISPRCasFinder	3072917-3072948	32	MN732922	Escherichia coli strain 49K plasmid unnamed, complete sequence	70876-70907	10	0.688
NZ_CP044961_1	1.48\|3072917\|32\|NZ_CP044961\|CRT,CRISPRCasFinder	3072917-3072948	32	NZ_CP020493	Salmonella enterica subsp. enterica strain 08-00436 plasmid pSE08-00436-1, complete sequence	47996-48027	10	0.688
NZ_CP044961_1	1.48\|3072917\|32\|NZ_CP044961\|CRT,CRISPRCasFinder	3072917-3072948	32	CP031284	Escherichia fergusonii strain 40A plasmid p280_40A, complete sequence	60929-60960	10	0.688
NZ_CP044961_1	1.48\|3072917\|32\|NZ_CP044961\|CRT,CRISPRCasFinder	3072917-3072948	32	CP042895	Escherichia coli strain CFSAN061772 plasmid pCFSAN061772_02, complete sequence	106230-106261	10	0.688
NZ_CP044961_1	1.48\|3072917\|32\|NZ_CP044961\|CRT,CRISPRCasFinder	3072917-3072948	32	NZ_CP022735	Escherichia coli strain SA186 plasmid pSA186_MCR1, complete sequence	61639-61670	10	0.688
NZ_CP044961_1	1.48\|3072917\|32\|NZ_CP044961\|CRT,CRISPRCasFinder	3072917-3072948	32	CP042898	Escherichia coli strain CFSAN061771 plasmid pCFSAN061771_02, complete sequence	125697-125728	10	0.688
NZ_CP044961_1	1.48\|3072917\|32\|NZ_CP044961\|CRT,CRISPRCasFinder	3072917-3072948	32	NZ_CP022165	Escherichia coli strain M160133 plasmid pM160133_p1, complete sequence	45079-45110	10	0.688
NZ_CP044961_1	1.48\|3072917\|32\|NZ_CP044961\|CRT,CRISPRCasFinder	3072917-3072948	32	NZ_CP012931	Salmonella enterica subsp. enterica serovar Heidelberg strain N13-01290 plasmid pN13-01290_23, complete sequence	119619-119650	10	0.688
NZ_CP044961_1	1.48\|3072917\|32\|NZ_CP044961\|CRT,CRISPRCasFinder	3072917-3072948	32	NZ_CP023143	Escherichia coli strain CFSAN061770 plasmid pEGY1-MCR-1, complete sequence	136443-136474	10	0.688
NZ_CP044961_1	1.48\|3072917\|32\|NZ_CP044961\|CRT,CRISPRCasFinder	3072917-3072948	32	NZ_CP026936	Escherichia coli strain CFS3292 plasmid pCFS3292-1, complete sequence	46428-46459	10	0.688
NZ_CP044961_1	1.48\|3072917\|32\|NZ_CP044961\|CRT,CRISPRCasFinder	3072917-3072948	32	NZ_CP025402	Escherichia coli strain MS8345 plasmid pMS8345A, complete sequence	182643-182674	10	0.688
NZ_CP044961_1	1.48\|3072917\|32\|NZ_CP044961\|CRT,CRISPRCasFinder	3072917-3072948	32	NZ_CP026933	Escherichia coli strain CFS3273 plasmid pCFS3273-1, complete sequence	46278-46309	10	0.688
NZ_CP044961_1	1.48\|3072917\|32\|NZ_CP044961\|CRT,CRISPRCasFinder	3072917-3072948	32	NZ_MH924589	Escherichia coli strain RDB9 plasmid pRDB9, complete sequence	197026-197057	10	0.688
NZ_CP044961_1	1.48\|3072917\|32\|NZ_CP044961\|CRT,CRISPRCasFinder	3072917-3072948	32	NZ_MH208235	Escherichia coli strain APECA2 plasmid pJMA2, complete sequence	166860-166891	10	0.688
NZ_CP044961_1	1.48\|3072917\|32\|NZ_CP044961\|CRT,CRISPRCasFinder	3072917-3072948	32	NZ_MK169211	Escherichia coli strain DUK14-2 plasmid pMOO-32, complete sequence	46091-46122	10	0.688
NZ_CP044961_1	1.48\|3072917\|32\|NZ_CP044961\|CRT,CRISPRCasFinder	3072917-3072948	32	NZ_CP016838	Salmonella enterica subsp. enterica serovar Senftenberg strain 775W (ATCC 43845) plasmid pSSE-ATCC-43845, complete sequence	46820-46851	10	0.688
NZ_CP044961_1	1.48\|3072917\|32\|NZ_CP044961\|CRT,CRISPRCasFinder	3072917-3072948	32	NZ_CP045074	Paracoccus kondratievae strain BJQ0001 plasmid unnamed1, complete sequence	452410-452441	10	0.688
NZ_CP044961_2	2.1\|3089626\|32\|NZ_CP044961\|CRISPRCasFinder,CRT	3089626-3089657	32	NZ_CP054615	Azospirillum oryzae strain KACC 14407 plasmid unnamed1, complete sequence	146919-146950	10	0.688
NZ_CP044961_2	2.4\|3089809\|32\|NZ_CP044961\|CRISPRCasFinder,CRT,PILER-CR	3089809-3089840	32	NZ_CP044072	Pseudomonas oryzihabitans strain FDAARGOS_657 plasmid unnamed1, complete sequence	99817-99848	10	0.688
NZ_CP044961_2	2.18\|3090664\|32\|NZ_CP044961\|CRISPRCasFinder,CRT,PILER-CR	3090664-3090695	32	NZ_CP019257	Escherichia coli strain 13TMH22 plasmid p13TMH22-1, complete sequence	20006-20037	10	0.688
NZ_CP044961_2	2.18\|3090664\|32\|NZ_CP044961\|CRISPRCasFinder,CRT,PILER-CR	3090664-3090695	32	NZ_CP019274	Escherichia coli strain 13P477T plasmid p13P477T-1, complete sequence	9024-9055	10	0.688
NZ_CP044961_2	2.18\|3090664\|32\|NZ_CP044961\|CRISPRCasFinder,CRT,PILER-CR	3090664-3090695	32	NZ_CP019275	Escherichia coli strain 13P477T plasmid p13P477T-2, complete sequence	27130-27161	10	0.688
NZ_CP044961_2	2.18\|3090664\|32\|NZ_CP044961\|CRISPRCasFinder,CRT,PILER-CR	3090664-3090695	32	NZ_CP019279	Escherichia coli strain 13P477T plasmid p13P477T-6, complete sequence	19363-19394	10	0.688
NZ_CP044961_2	2.18\|3090664\|32\|NZ_CP044961\|CRISPRCasFinder,CRT,PILER-CR	3090664-3090695	32	NZ_CP019246	Escherichia coli strain Combat13F7 plasmid pCombat13F7-1, complete sequence	23427-23458	10	0.688
NZ_CP044961_2	2.18\|3090664\|32\|NZ_CP044961\|CRISPRCasFinder,CRT,PILER-CR	3090664-3090695	32	NC_049342	Escherichia phage 500465-1, complete genome	24342-24373	10	0.688
NZ_CP044961_2	2.18\|3090664\|32\|NZ_CP044961\|CRISPRCasFinder,CRT,PILER-CR	3090664-3090695	32	KY271398	Klebsiella phage 4 LV-2017, complete genome	28240-28271	10	0.688
NZ_CP044961_2	2.18\|3090664\|32\|NZ_CP044961\|CRISPRCasFinder,CRT,PILER-CR	3090664-3090695	32	CP025900	Escherichia phage sp., complete genome	24342-24373	10	0.688
NZ_CP044961_1	1.33\|3072932\|33\|NZ_CP044961\|PILER-CR	3072932-3072964	33	NC_019201	Streptomyces sp. x4(2010) plasmid pTSC1, complete sequence	248-280	11	0.667
NZ_CP044961_2	2.22\|3090908\|32\|NZ_CP044961\|CRISPRCasFinder,CRT,PILER-CR	3090908-3090939	32	NZ_CP054036	Rhizobium sp. JKLM13E plasmid pPR13E05, complete sequence	234768-234799	11	0.656
NZ_CP044961_2	2.22\|3090908\|32\|NZ_CP044961\|CRISPRCasFinder,CRT,PILER-CR	3090908-3090939	32	NZ_CP022568	Rhizobium leguminosarum bv. viciae strain BIHB 1148 plasmid pSK04, complete sequence	299431-299462	11	0.656

1. spacer 1.22|3072261|33|NZ_CP044961|PILER-CR matches to CP051275 (Salmonella phage SW-37, complete genome) position: , mismatch: 1, identity: 0.97

tggaccgatggggccaacatcgccgaacgtggc	CRISPR spacer
cggaccgatggggccaacatcgccgaacgtggc	Protospacer
.********************************

2. spacer 1.22|3072261|33|NZ_CP044961|PILER-CR matches to KC139516 (Salmonella phage FSL SP-016, partial genome) position: , mismatch: 1, identity: 0.97

tggaccgatggggccaacatcgccgaacgtggc	CRISPR spacer
tggaccgatggggccaacatcgccgaatgtggc	Protospacer
***************************.*****

3. spacer 1.37|3072246|32|NZ_CP044961|CRT,CRISPRCasFinder matches to CP051275 (Salmonella phage SW-37, complete genome) position: , mismatch: 1, identity: 0.969

tggaccgatggggccaacatcgccgaacgtgg	CRISPR spacer
cggaccgatggggccaacatcgccgaacgtgg	Protospacer
.*******************************

4. spacer 1.37|3072246|32|NZ_CP044961|CRT,CRISPRCasFinder matches to KC139516 (Salmonella phage FSL SP-016, partial genome) position: , mismatch: 1, identity: 0.969

tggaccgatggggccaacatcgccgaacgtgg	CRISPR spacer
tggaccgatggggccaacatcgccgaatgtgg	Protospacer
***************************.****

5. spacer 2.5|3089870|32|NZ_CP044961|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP034699 (Salmonella enterica subsp. enterica serovar Karamoja strain RSE40 plasmid pRSE40, complete sequence) position: , mismatch: 1, identity: 0.969

tgcgtaatgggctacctgaacttcacatatcc	CRISPR spacer
tgcgtagtgggctacctgaacttcacatatcc	Protospacer
******.*************************

6. spacer 2.5|3089870|32|NZ_CP044961|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP034710 (Salmonella enterica subsp. enterica serovar Karamoja strain RSE21 plasmid pRSE21, complete sequence) position: , mismatch: 1, identity: 0.969

tgcgtaatgggctacctgaacttcacatatcc	CRISPR spacer
tgcgtagtgggctacctgaacttcacatatcc	Protospacer
******.*************************

7. spacer 2.11|3090237|32|NZ_CP044961|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP030204 (Salmonella enterica strain SA20083530 plasmid pSA20083530.1, complete sequence) position: , mismatch: 2, identity: 0.938

accgataaacaaccgcatagcctctttcgttt	CRISPR spacer
accgataaacaatcgcatggcctctttcgttt	Protospacer
************.*****.*************

8. spacer 1.37|3072246|32|NZ_CP044961|CRT,CRISPRCasFinder matches to JQ182729 (Enterobacterial phage mEp390, complete genome) position: , mismatch: 3, identity: 0.906

tggaccgatggggccaacatcgccgaacgtgg	CRISPR spacer
tggacctatggggccaacatcaccgaacgtag	Protospacer
****** **************.********.*

9. spacer 1.19|3072082|28|NZ_CP044961|PILER-CR matches to NC_009927 (Acaryochloris marina MBIC11017 plasmid pREB2, complete sequence) position: , mismatch: 5, identity: 0.821

gatcgagtaacgtgcgctggaacgcgtc	CRISPR spacer
gattgaggaacgtgcgctggaacgatta	Protospacer
***.*** ****************  *

10. spacer 1.48|3072917|32|NZ_CP044961|CRT,CRISPRCasFinder matches to NC_008269 (Rhodococcus jostii RHA1 plasmid pRHL1, complete sequence) position: , mismatch: 5, identity: 0.844

tctcggtctcggtctcggtctcggtagtgacg	CRISPR spacer
tctgggtctcggtctcggtctcggttgtctgg	Protospacer
*** ********************* **   *

11. spacer 1.24|3072383|33|NZ_CP044961|PILER-CR matches to MT774487 (Salmonella phage MG40, complete genome) position: , mismatch: 6, identity: 0.818

ccagaaagtgccggtagtgcctgatgaacgacc	CRISPR spacer
ccagccagtgccggtagtgcctgatgaaatggc	Protospacer
****  **********************  . *

12. spacer 1.33|3072932|33|NZ_CP044961|PILER-CR matches to NC_008269 (Rhodococcus jostii RHA1 plasmid pRHL1, complete sequence) position: , mismatch: 6, identity: 0.818

tctcggtctcggtctcggtctcggtagtgacgc	CRISPR spacer
tctgggtctcggtctcggtctcggttgtctggg	Protospacer
*** ********************* **   *

13. spacer 1.39|3072368|32|NZ_CP044961|CRT,CRISPRCasFinder matches to MT774487 (Salmonella phage MG40, complete genome) position: , mismatch: 6, identity: 0.812

ccagaaagtgccggtagtgcctgatgaacgac	CRISPR spacer
ccagccagtgccggtagtgcctgatgaaatgg	Protospacer
****  **********************  .

14. spacer 1.48|3072917|32|NZ_CP044961|CRT,CRISPRCasFinder matches to NZ_CP025013 (Rhizobium leguminosarum strain Norway plasmid pRLN1, complete sequence) position: , mismatch: 6, identity: 0.812

tctcggtctcggtctcggtctcggtagtgacg	CRISPR spacer
tctcggtctcggtctcggtctcggtctcggtc	Protospacer
*************************  .*..

15. spacer 1.48|3072917|32|NZ_CP044961|CRT,CRISPRCasFinder matches to NC_019201 (Streptomyces sp. x4(2010) plasmid pTSC1, complete sequence) position: , mismatch: 6, identity: 0.812

tctcggtctcggtctcggtctcg-gtagtgacg	CRISPR spacer
tctcagtctcggtctcagtctcgcgtgggggc-	Protospacer
****.***********.****** **.* *.*

16. spacer 2.13|3090359|32|NZ_CP044961|CRISPRCasFinder,CRT,PILER-CR matches to NC_019849 (Sinorhizobium meliloti GR4 plasmid pRmeGR4d, complete sequence) position: , mismatch: 6, identity: 0.812

tatttcgc--cttcggcactgacgtcaccgtcaa	CRISPR spacer
--ttccgccgcttcggctccgacgtcaccgtcat	Protospacer
  **.***  ******* *.*************

17. spacer 2.13|3090359|32|NZ_CP044961|CRISPRCasFinder,CRT,PILER-CR matches to NC_003078 (Sinorhizobium meliloti 1021 plasmid pSymB, complete sequence) position: , mismatch: 6, identity: 0.812

tatttcgc--cttcggcactgacgtcaccgtcaa	CRISPR spacer
--ttccgccgcttcggctccgacgtcaccgtcat	Protospacer
  **.***  ******* *.*************

18. spacer 2.13|3090359|32|NZ_CP044961|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP019586 (Sinorhizobium meliloti strain CCMM B554 (FSM-MA) plasmid pSymB, complete sequence) position: , mismatch: 6, identity: 0.812

tatttcgc--cttcggcactgacgtcaccgtcaa	CRISPR spacer
--ttccgccgcttcggctccgacgtcaccgtcat	Protospacer
  **.***  ******* *.*************

19. spacer 2.13|3090359|32|NZ_CP044961|CRISPRCasFinder,CRT,PILER-CR matches to NC_017326 (Sinorhizobium meliloti SM11 plasmid pSmeSM11d, complete sequence) position: , mismatch: 6, identity: 0.812

tatttcgc--cttcggcactgacgtcaccgtcaa	CRISPR spacer
--ttccgccgcttcggctccgacgtcaccgtcat	Protospacer
  **.***  ******* *.*************

20. spacer 2.13|3090359|32|NZ_CP044961|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP021799 (Sinorhizobium meliloti strain USDA1106 plasmid psymB, complete sequence) position: , mismatch: 6, identity: 0.812

tatttcgc--cttcggcactgacgtcaccgtcaa	CRISPR spacer
--ttccgccgcttcggctccgacgtcaccgtcat	Protospacer
  **.***  ******* *.*************

21. spacer 2.13|3090359|32|NZ_CP044961|CRISPRCasFinder,CRT,PILER-CR matches to NC_017323 (Sinorhizobium meliloti BL225C plasmid pSINMEB02, complete sequence) position: , mismatch: 6, identity: 0.812

tatttcgc--cttcggcactgacgtcaccgtcaa	CRISPR spacer
--ttccgccgcttcggctccgacgtcaccgtcat	Protospacer
  **.***  ******* *.*************

22. spacer 2.13|3090359|32|NZ_CP044961|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP009146 (Sinorhizobium meliloti strain RMO17 plasmid pSymB, complete sequence) position: , mismatch: 6, identity: 0.812

tatttcgc--cttcggcactgacgtcaccgtcaa	CRISPR spacer
--ttccgccgcttcggctccgacgtcaccgtcat	Protospacer
  **.***  ******* *.*************

23. spacer 2.13|3090359|32|NZ_CP044961|CRISPRCasFinder,CRT,PILER-CR matches to NC_018701 (Sinorhizobium meliloti Rm41 plasmid pSYMB, complete sequence) position: , mismatch: 6, identity: 0.812

tatttcgc--cttcggcactgacgtcaccgtcaa	CRISPR spacer
--ttccgccgcttcggctccgacgtcaccgtcat	Protospacer
  **.***  ******* *.*************

24. spacer 2.13|3090359|32|NZ_CP044961|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP021828 (Sinorhizobium meliloti strain KH35c plasmid psymB, complete sequence) position: , mismatch: 6, identity: 0.812

tatttcgc--cttcggcactgacgtcaccgtcaa	CRISPR spacer
--ttccgccgcttcggctccgacgtcaccgtcat	Protospacer
  **.***  ******* *.*************

25. spacer 2.13|3090359|32|NZ_CP044961|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP021802 (Sinorhizobium meliloti strain USDA1021 plasmid psymB, complete sequence) position: , mismatch: 6, identity: 0.812

tatttcgc--cttcggcactgacgtcaccgtcaa	CRISPR spacer
--ttccgccgcttcggctccgacgtcaccgtcat	Protospacer
  **.***  ******* *.*************

26. spacer 2.13|3090359|32|NZ_CP044961|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP021820 (Sinorhizobium meliloti strain M162 plasmid psymB, complete sequence) position: , mismatch: 6, identity: 0.812

tatttcgc--cttcggcactgacgtcaccgtcaa	CRISPR spacer
--ttccgccgcttcggctccgacgtcaccgtcat	Protospacer
  **.***  ******* *.*************

27. spacer 2.13|3090359|32|NZ_CP044961|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP021831 (Sinorhizobium meliloti strain HM006 plasmid psymB, complete sequence) position: , mismatch: 6, identity: 0.812

tatttcgc--cttcggcactgacgtcaccgtcaa	CRISPR spacer
--ttccgccgcttcggctccgacgtcaccgtcat	Protospacer
  **.***  ******* *.*************

28. spacer 2.13|3090359|32|NZ_CP044961|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP021823 (Sinorhizobium meliloti strain KH46 plasmid psymB, complete sequence) position: , mismatch: 6, identity: 0.812

tatttcgc--cttcggcactgacgtcaccgtcaa	CRISPR spacer
--ttccgccgcttcggctccgacgtcaccgtcat	Protospacer
  **.***  ******* *.*************

29. spacer 2.13|3090359|32|NZ_CP044961|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP021814 (Sinorhizobium meliloti strain M270 plasmid psymB, complete sequence) position: , mismatch: 6, identity: 0.812

tatttcgc--cttcggcactgacgtcaccgtcaa	CRISPR spacer
--ttccgccgcttcggctccgacgtcaccgtcat	Protospacer
  **.***  ******* *.*************

30. spacer 2.13|3090359|32|NZ_CP044961|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP021795 (Sinorhizobium meliloti strain USDA1157 plasmid psymB, complete sequence) position: , mismatch: 6, identity: 0.812

tatttcgc--cttcggcactgacgtcaccgtcaa	CRISPR spacer
--ttccgccgcttcggctccgacgtcaccgtcat	Protospacer
  **.***  ******* *.*************

31. spacer 2.13|3090359|32|NZ_CP044961|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP021810 (Sinorhizobium meliloti strain Rm41 plasmid psymB, complete sequence) position: , mismatch: 6, identity: 0.812

tatttcgc--cttcggcactgacgtcaccgtcaa	CRISPR spacer
--ttccgccgcttcggctccgacgtcaccgtcat	Protospacer
  **.***  ******* *.*************

32. spacer 2.13|3090359|32|NZ_CP044961|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP021806 (Sinorhizobium meliloti strain T073 plasmid psymB, complete sequence) position: , mismatch: 6, identity: 0.812

tatttcgc--cttcggcactgacgtcaccgtcaa	CRISPR spacer
--ttccgccgcttcggctccgacgtcaccgtcat	Protospacer
  **.***  ******* *.*************

33. spacer 2.13|3090359|32|NZ_CP044961|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP021218 (Sinorhizobium meliloti RU11/001 plasmid pSymB, complete sequence) position: , mismatch: 6, identity: 0.812

tatttcgc--cttcggcactgacgtcaccgtcaa	CRISPR spacer
--ttccgccgcttcggctccgacgtcaccgtcat	Protospacer
  **.***  ******* *.*************

34. spacer 2.13|3090359|32|NZ_CP044961|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP026527 (Sinorhizobium meliloti strain AK21 plasmid pSymB, complete sequence) position: , mismatch: 6, identity: 0.812

tatttcgc--cttcggcactgacgtcaccgtcaa	CRISPR spacer
--ttccgccgcttcggctccgacgtcaccgtcat	Protospacer
  **.***  ******* *.*************

35. spacer 2.13|3090359|32|NZ_CP044961|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP019484 (Sinorhizobium meliloti strain B401 plasmid pSymB, complete sequence) position: , mismatch: 6, identity: 0.812

tatttcgc--cttcggcactgacgtcaccgtcaa	CRISPR spacer
--ttccgccgcttcggctccgacgtcaccgtcat	Protospacer
  **.***  ******* *.*************

36. spacer 2.13|3090359|32|NZ_CP044961|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP019487 (Sinorhizobium meliloti strain B399 plasmid pSym, complete sequence) position: , mismatch: 6, identity: 0.812

tatttcgc--cttcggcactgacgtcaccgtcaa	CRISPR spacer
--ttccgccgcttcggctccgacgtcaccgtcat	Protospacer
  **.***  ******* *.*************

37. spacer 2.13|3090359|32|NZ_CP044961|CRISPRCasFinder,CRT,PILER-CR matches to NC_020560 (Sinorhizobium meliloti 2011 plasmid pSymB, complete sequence) position: , mismatch: 6, identity: 0.812

tatttcgc--cttcggcactgacgtcaccgtcaa	CRISPR spacer
--ttccgccgcttcggctccgacgtcaccgtcat	Protospacer
  **.***  ******* *.*************

38. spacer 1.9|3072020|32|NZ_CP044961|CRISPRCasFinder,CRT matches to NZ_CP013929 (Alteromonas mediterranea strain UM8 plasmid pAMEDUM8_300, complete sequence) position: , mismatch: 7, identity: 0.781

aatcact--gcgggggtatttagcggaaacggct	CRISPR spacer
--tcgctgcgcgggggtatttagcgaaatcgggg	Protospacer
  **.**  ****************.** ***

39. spacer 1.9|3072020|32|NZ_CP044961|CRISPRCasFinder,CRT matches to CP013931 (Alteromonas mediterranea strain U10 plasmid pAMED10_300, complete sequence) position: , mismatch: 7, identity: 0.781

aatcact--gcgggggtatttagcggaaacggct	CRISPR spacer
--tcgctgcgcgggggtatttagcgaaatcgggg	Protospacer
  **.**  ****************.** ***

40. spacer 1.9|3072020|32|NZ_CP044961|CRISPRCasFinder,CRT matches to NC_019394 (Alteromonas mediterranea DE1 plasmid pAMDE1, complete sequence) position: , mismatch: 7, identity: 0.781

aatcact--gcgggggtatttagcggaaacggct	CRISPR spacer
--tcgctgcgcgggggtatttagcgaaatcgggg	Protospacer
  **.**  ****************.** ***

41. spacer 1.24|3072383|33|NZ_CP044961|PILER-CR matches to JQ288021 (Salmonella phage SPN3UB, complete genome) position: , mismatch: 7, identity: 0.788

ccagaaagtgccggtagtgcctgatgaacgacc	CRISPR spacer
gcagccagtgccggtagtgcctgatgaaatggc	Protospacer
 ***  **********************  . *

42. spacer 1.24|3072383|33|NZ_CP044961|PILER-CR matches to MH370364 (Salmonella phage S107, complete genome) position: , mismatch: 7, identity: 0.788

ccagaaagtgccggtagtgcctgatgaacgacc	CRISPR spacer
gcagccagtgccggtagtgcctgatgaaatggc	Protospacer
 ***  **********************  . *

43. spacer 1.24|3072383|33|NZ_CP044961|PILER-CR matches to MH370382 (Salmonella phage S135, complete genome) position: , mismatch: 7, identity: 0.788

ccagaaagtgccggtagtgcctgatgaacgacc	CRISPR spacer
gcagccagtgccggtagtgcctgatgaaatggc	Protospacer
 ***  **********************  . *

44. spacer 1.24|3072383|33|NZ_CP044961|PILER-CR matches to MH370383 (Salmonella phage S137, complete genome) position: , mismatch: 7, identity: 0.788

ccagaaagtgccggtagtgcctgatgaacgacc	CRISPR spacer
gcagccagtgccggtagtgcctgatgaaatggc	Protospacer
 ***  **********************  . *

45. spacer 1.33|3072932|33|NZ_CP044961|PILER-CR matches to NZ_CP025013 (Rhizobium leguminosarum strain Norway plasmid pRLN1, complete sequence) position: , mismatch: 7, identity: 0.788

tctcggtctcggtctcggtctcggtagtgacgc	CRISPR spacer
tctcggtctcggtctcggtctcggtctcggtct	Protospacer
*************************  .*.. .

46. spacer 1.33|3072932|33|NZ_CP044961|PILER-CR matches to MT758688 (Mycobacterium phage CELFI, complete genome) position: , mismatch: 7, identity: 0.788

tctcggtctcggtctcggtctcggtagtgacgc	CRISPR spacer
tctcggtcccggtcccggtctcggtcccgttgc	Protospacer
********.*****.**********  .* .**

47. spacer 1.33|3072932|33|NZ_CP044961|PILER-CR matches to MH509446 (Gordonia phage DelRio, complete genome) position: , mismatch: 7, identity: 0.788

tctcggtctcggtctcggtctcggtagtgacgc	CRISPR spacer
tctcggtttcggtctcggtcgcggtctcggtgc	Protospacer
*******.************ ****  .*..**

48. spacer 1.39|3072368|32|NZ_CP044961|CRT,CRISPRCasFinder matches to JQ288021 (Salmonella phage SPN3UB, complete genome) position: , mismatch: 7, identity: 0.781

ccagaaagtgccggtagtgcctgatgaacgac	CRISPR spacer
gcagccagtgccggtagtgcctgatgaaatgg	Protospacer
 ***  **********************  .

49. spacer 1.39|3072368|32|NZ_CP044961|CRT,CRISPRCasFinder matches to MH370364 (Salmonella phage S107, complete genome) position: , mismatch: 7, identity: 0.781

ccagaaagtgccggtagtgcctgatgaacgac	CRISPR spacer
gcagccagtgccggtagtgcctgatgaaatgg	Protospacer
 ***  **********************  .

50. spacer 1.39|3072368|32|NZ_CP044961|CRT,CRISPRCasFinder matches to MH370382 (Salmonella phage S135, complete genome) position: , mismatch: 7, identity: 0.781

ccagaaagtgccggtagtgcctgatgaacgac	CRISPR spacer
gcagccagtgccggtagtgcctgatgaaatgg	Protospacer
 ***  **********************  .

51. spacer 1.39|3072368|32|NZ_CP044961|CRT,CRISPRCasFinder matches to MH370383 (Salmonella phage S137, complete genome) position: , mismatch: 7, identity: 0.781

ccagaaagtgccggtagtgcctgatgaacgac	CRISPR spacer
gcagccagtgccggtagtgcctgatgaaatgg	Protospacer
 ***  **********************  .

52. spacer 1.41|3072490|32|NZ_CP044961|CRT,CRISPRCasFinder matches to NZ_CP054841 (Acidovorax sp. 16-35-5 plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.781

ggcagcgggcgaggcaaacacattcggggcgt	CRISPR spacer
gccacggcgcgaggcaaacacattcaggtcgc	Protospacer
* **  * *****************.** **.

53. spacer 1.42|3072551|32|NZ_CP044961|CRT,CRISPRCasFinder matches to NZ_CP054841 (Acidovorax sp. 16-35-5 plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.781

ggcagcgggcgaggcaaacacattcggggcgt	CRISPR spacer
gccacggcgcgaggcaaacacattcaggtcgc	Protospacer
* **  * *****************.** **.

54. spacer 1.44|3072673|32|NZ_CP044961|CRT,CRISPRCasFinder matches to NZ_CP024773 (Bacillus thuringiensis LM1212 plasmid pLM2, complete sequence) position: , mismatch: 7, identity: 0.781

gaatctaatgcaacagatgaataaacacgtaa	CRISPR spacer
gcttctaatgcaatagatgaagaaacaccaat	Protospacer
*  **********.******* ******  *

55. spacer 1.44|3072673|32|NZ_CP044961|CRT,CRISPRCasFinder matches to NZ_CP041075 (Bacillus tropicus strain LM1212-W3 plasmid p2, complete sequence) position: , mismatch: 7, identity: 0.781

gaatctaatgcaacagatgaataaacacgtaa	CRISPR spacer
gcttctaatgcaatagatgaagaaacaccaat	Protospacer
*  **********.******* ******  *

56. spacer 1.48|3072917|32|NZ_CP044961|CRT,CRISPRCasFinder matches to MH509446 (Gordonia phage DelRio, complete genome) position: , mismatch: 7, identity: 0.781

tctcggtctcggtctcggtctcggtagtgacg	CRISPR spacer
tttcggtctcggtcgcggtctcggtgccctcg	Protospacer
*.************ **********. .  **

57. spacer 1.48|3072917|32|NZ_CP044961|CRT,CRISPRCasFinder matches to MH509446 (Gordonia phage DelRio, complete genome) position: , mismatch: 7, identity: 0.781

tctcggtctcggtctcggtctcggtagtgacg	CRISPR spacer
tctcggtttcggtctcggtcgcggtctcggtg	Protospacer
*******.************ ****  .*..*

58. spacer 1.48|3072917|32|NZ_CP044961|CRT,CRISPRCasFinder matches to MT758688 (Mycobacterium phage CELFI, complete genome) position: , mismatch: 7, identity: 0.781

tctcggtctcggtctcggtctcggtagtgacg	CRISPR spacer
tctcggtcccggtcccggtctcggtcccgttg	Protospacer
********.*****.**********  .* .*

59. spacer 1.48|3072917|32|NZ_CP044961|CRT,CRISPRCasFinder matches to NC_006363 (Nocardia farcinica IFM 10152 plasmid pNF2, complete sequence) position: , mismatch: 7, identity: 0.781

tctcggtctcggtctcggtctcggtagtgacg	CRISPR spacer
gctcgatctcggtcgcggtctcggtgcggatg	Protospacer
 ****.******** **********.  **.*

60. spacer 1.48|3072917|32|NZ_CP044961|CRT,CRISPRCasFinder matches to NZ_LN868942 (Nocardia farcinica strain NCTC11134 plasmid 5, complete sequence) position: , mismatch: 7, identity: 0.781

tctcggtctcggtctcggtctcggtagtgacg	CRISPR spacer
gctcgatctcggtcgcggtctcggtgcggatg	Protospacer
 ****.******** **********.  **.*

61. spacer 1.48|3072917|32|NZ_CP044961|CRT,CRISPRCasFinder matches to NZ_CP031420 (Nocardia farcinica strain W6977 plasmid unnamed2, complete sequence) position: , mismatch: 7, identity: 0.781

tctcggtctcggtctcggtctcggtagtgacg	CRISPR spacer
gctcgatctcggtcgcggtctcggtgcggatg	Protospacer
 ****.******** **********.  **.*

62. spacer 1.48|3072917|32|NZ_CP044961|CRT,CRISPRCasFinder matches to NZ_CP029452 (Sinorhizobium fredii CCBAU 25509 plasmid pSF25509b, complete sequence) position: , mismatch: 7, identity: 0.781

tctcggtctcggtctcggtctcggtagtgacg	CRISPR spacer
tctcggcctcggcctcggtctcggcctcggcg	Protospacer
******.*****.***********.  .*.**

63. spacer 1.48|3072917|32|NZ_CP044961|CRT,CRISPRCasFinder matches to NC_008697 (Nocardioides sp. JS614 plasmid pNOCA01, complete sequence) position: , mismatch: 7, identity: 0.781

tctcggtctcggtctcggtctcggtagtgacg	CRISPR spacer
cctcggcctcggcctcggtctcggcggcggcg	Protospacer
.*****.*****.***********..*.*.**

64. spacer 1.51|3073101|32|NZ_CP044961|CRT,CRISPRCasFinder,PILER-CR matches to MN693183 (Marine virus AFVG_25M360, complete genome) position: , mismatch: 7, identity: 0.781

agccggcgc-gagcctggagggttgaataatgg	CRISPR spacer
-gcggattcagagtttggagggttgaataatgg	Protospacer
 ** *.. * ***..******************

65. spacer 1.56|3073406|32|NZ_CP044961|CRT,CRISPRCasFinder,PILER-CR matches to NZ_CP014127 (Pantoea vagans strain FDAARGOS_160 plasmid unnamed2, complete sequence) position: , mismatch: 7, identity: 0.781

tgtaacagtccgtcgttaatcagcgcggtggg	CRISPR spacer
cgatacagtccggcgttaatcagcccggtgcc	Protospacer
.*  ******** *********** *****

66. spacer 1.56|3073406|32|NZ_CP044961|CRT,CRISPRCasFinder,PILER-CR matches to NZ_CP028350 (Pantoea vagans strain PV989 plasmid pPV989-508, complete sequence) position: , mismatch: 7, identity: 0.781

tgtaacagtccgtcgttaatcagcgcggtggg	CRISPR spacer
cgatacagtccggcgttaatcagcccggtgcc	Protospacer
.*  ******** *********** *****

67. spacer 1.56|3073406|32|NZ_CP044961|CRT,CRISPRCasFinder,PILER-CR matches to NC_014258 (Pantoea vagans C9-1 plasmid pPag3, complete sequence) position: , mismatch: 7, identity: 0.781

tgtaacagtccgtcgttaatcagcgcggtggg	CRISPR spacer
cgatacagtccggcgttaatcagcccggtgcc	Protospacer
.*  ******** *********** *****

68. spacer 1.56|3073406|32|NZ_CP044961|CRT,CRISPRCasFinder,PILER-CR matches to NZ_CP038854 (Pantoea vagans strain LMG 24199 plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.781

tgtaacagtccgtcgttaatcagcgcggtggg	CRISPR spacer
cgatacagtccggcgttaatcagcccggtgcc	Protospacer
.*  ******** *********** *****

69. spacer 2.13|3090359|32|NZ_CP044961|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP030829 (Neorhizobium sp. NCHU2750 plasmid pNCHU2750b, complete sequence) position: , mismatch: 7, identity: 0.781

tatttcgccttcggcactgacgtcaccgtcaa	CRISPR spacer
tacgtcgccttcggcaatgtcgtcaccgaaga	Protospacer
**. ************ ** ********  .*

70. spacer 2.22|3090908|32|NZ_CP044961|CRISPRCasFinder,CRT,PILER-CR matches to NC_011366 (Rhizobium leguminosarum bv. trifolii WSM2304 plasmid pRLG202, complete sequence) position: , mismatch: 7, identity: 0.781

---gggcactatgaacggatcggcgctgatgccgg	CRISPR spacer
ttcgagc---atgaccggatcggcgctggtgccga	Protospacer
   *.**   **** *************.*****.

71. spacer 2.22|3090908|32|NZ_CP044961|CRISPRCasFinder,CRT,PILER-CR matches to NC_017958 (Tistrella mobilis KA081020-065 plasmid pTM3, complete sequence) position: , mismatch: 7, identity: 0.781

gggcactatgaacggatcggcgctgatgccgg	CRISPR spacer
ggcggcggtgaaaggatcggcggtgatgccgg	Protospacer
**  .* .**** ********* *********

72. spacer 2.22|3090908|32|NZ_CP044961|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP035001 (Rhizobium acidisoli strain FH23 plasmid pRapFH23c, complete sequence) position: , mismatch: 7, identity: 0.781

---gggcactatgaacggatcggcgctgatgccgg	CRISPR spacer
ttcgagc---atgaccggatcggcgctggtgccga	Protospacer
   *.**   **** *************.*****.

73. spacer 1.2|3071593|32|NZ_CP044961|CRISPRCasFinder,CRT matches to MN855803 (Bacteriophage sp. isolate 108, partial genome) position: , mismatch: 8, identity: 0.75

gcgaaatagtggggaaaaacccctggttaacc	CRISPR spacer
tttcaatattggggaaaaacccctcgttacct	Protospacer
 .  **** *************** **** *.

74. spacer 1.8|3071959|32|NZ_CP044961|CRISPRCasFinder,CRT matches to NZ_CP016489 (Synechococcus sp. PCC 8807 plasmid unnamed6, complete sequence) position: , mismatch: 8, identity: 0.75

tatccacatatacccgcaatcatattcaagaa	CRISPR spacer
ggtaaatctaaacccgcaatcatattcaagag	Protospacer
 .*  *. ** ********************.

75. spacer 1.8|3071959|32|NZ_CP044961|CRISPRCasFinder,CRT matches to NZ_CP016476 (Synechococcus sp. PCC 7003 plasmid unnamed2, complete sequence) position: , mismatch: 8, identity: 0.75

tatccacatatacccgcaatcatattcaagaa	CRISPR spacer
ggtaaatctaaacccgcaatcatattcaagag	Protospacer
 .*  *. ** ********************.

76. spacer 1.29|3072688|33|NZ_CP044961|PILER-CR matches to NZ_CP041075 (Bacillus tropicus strain LM1212-W3 plasmid p2, complete sequence) position: , mismatch: 8, identity: 0.758

gaatctaatgcaacagatgaataaacacgtaac	CRISPR spacer
gcttctaatgcaatagatgaagaaacaccaatt	Protospacer
*  **********.******* ******  * .

77. spacer 1.29|3072688|33|NZ_CP044961|PILER-CR matches to NZ_CP024773 (Bacillus thuringiensis LM1212 plasmid pLM2, complete sequence) position: , mismatch: 8, identity: 0.758

gaatctaatgcaacagatgaataaacacgtaac	CRISPR spacer
gcttctaatgcaatagatgaagaaacaccaatt	Protospacer
*  **********.******* ******  * .

78. spacer 1.33|3072932|33|NZ_CP044961|PILER-CR matches to NC_008269 (Rhodococcus jostii RHA1 plasmid pRHL1, complete sequence) position: , mismatch: 8, identity: 0.758

------tctcggtctcggtctcggtctcggtagtgacgc	CRISPR spacer
actgggtctgggtctcggtctcggtctcggttg------	Protospacer
      *** ********************* *

79. spacer 1.33|3072932|33|NZ_CP044961|PILER-CR matches to NC_006363 (Nocardia farcinica IFM 10152 plasmid pNF2, complete sequence) position: , mismatch: 8, identity: 0.758

tctcggtctcggtctcggtctcggtagtgacgc	CRISPR spacer
gctcgatctcggtcgcggtctcggtgcggatgg	Protospacer
 ****.******** **********.  **.*

80. spacer 1.33|3072932|33|NZ_CP044961|PILER-CR matches to NZ_LN868942 (Nocardia farcinica strain NCTC11134 plasmid 5, complete sequence) position: , mismatch: 8, identity: 0.758

tctcggtctcggtctcggtctcggtagtgacgc	CRISPR spacer
gctcgatctcggtcgcggtctcggtgcggatgg	Protospacer
 ****.******** **********.  **.*

81. spacer 1.33|3072932|33|NZ_CP044961|PILER-CR matches to NZ_CP031420 (Nocardia farcinica strain W6977 plasmid unnamed2, complete sequence) position: , mismatch: 8, identity: 0.758

tctcggtctcggtctcggtctcggtagtgacgc	CRISPR spacer
gctcgatctcggtcgcggtctcggtgcggatgg	Protospacer
 ****.******** **********.  **.*

82. spacer 1.33|3072932|33|NZ_CP044961|PILER-CR matches to NZ_CP029452 (Sinorhizobium fredii CCBAU 25509 plasmid pSF25509b, complete sequence) position: , mismatch: 8, identity: 0.758

tctcggtctcggtctcggtctcggtagtgacgc	CRISPR spacer
tctcggcctcggcctcggtctcggcctcggcgt	Protospacer
******.*****.***********.  .*.**.

83. spacer 1.43|3072612|32|NZ_CP044961|CRT,CRISPRCasFinder matches to NZ_CP016179 (Vibrio breoganii strain FF50 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.75

ggtaatttctcatctaacagcct-----gtacgcctc	CRISPR spacer
ggtaatttcgcatcaaacagccttattagtat-----	Protospacer
********* **** ********     ***.

84. spacer 1.47|3072856|32|NZ_CP044961|CRT,CRISPRCasFinder matches to AP013976 (Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C7-MedDCM-OCT-S26-C28, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 8, identity: 0.75

cgttgcgtcaggttgatccagtgcgtcagcgg	CRISPR spacer
agttgcgccagcttgatccagtgctgatgcgt	Protospacer
 ******.*** ************    ***

85. spacer 1.47|3072856|32|NZ_CP044961|CRT,CRISPRCasFinder matches to JX536274 (Uncultured Mediterranean phage MEDS5 group fosmid MedDCM-OCT-S15-C5, complete sequence) position: , mismatch: 8, identity: 0.75

cgttgcgtcaggttgatccagtgcgtcagcgg	CRISPR spacer
agttgcgccagcttgatccagtgctgatgcgt	Protospacer
 ******.*** ************    ***

86. spacer 1.48|3072917|32|NZ_CP044961|CRT,CRISPRCasFinder matches to NZ_CP025013 (Rhizobium leguminosarum strain Norway plasmid pRLN1, complete sequence) position: , mismatch: 8, identity: 0.75

tctcggtctcggtctcggtctcggtagtgacg	CRISPR spacer
tctcggtctcggtctcggtctcgacgacgctt	Protospacer
***********************.....* .

87. spacer 1.48|3072917|32|NZ_CP044961|CRT,CRISPRCasFinder matches to NC_008269 (Rhodococcus jostii RHA1 plasmid pRHL1, complete sequence) position: , mismatch: 8, identity: 0.75

------tctcggtctcggtctcggtctcggtagtgacg	CRISPR spacer
actgggtctgggtctcggtctcggtctcggtt------	Protospacer
      *** *********************

88. spacer 1.48|3072917|32|NZ_CP044961|CRT,CRISPRCasFinder matches to JQ807255 (Environmental Halophage eHP-36, partial genome) position: , mismatch: 8, identity: 0.75

tctcggtctcggtctcggtctcggtagtgacg	CRISPR spacer
catcggtctcggtctcggtctcggttccagtg	Protospacer
. ***********************  ....*

89. spacer 1.48|3072917|32|NZ_CP044961|CRT,CRISPRCasFinder matches to MH509446 (Gordonia phage DelRio, complete genome) position: , mismatch: 8, identity: 0.75

tctcggtctcggtctcggtctcggtagtgacg	CRISPR spacer
actccgtctcggtttcggtctcggtcgcggtc	Protospacer
 *** ********.*********** *.*..

90. spacer 1.48|3072917|32|NZ_CP044961|CRT,CRISPRCasFinder matches to NZ_CP029452 (Sinorhizobium fredii CCBAU 25509 plasmid pSF25509b, complete sequence) position: , mismatch: 8, identity: 0.75

tctcggtctcggtctcggtctcggtagtgacg	CRISPR spacer
cctcggtctcggcctcggcctcggtctcggcc	Protospacer
.***********.*****.******  .*.*

91. spacer 1.48|3072917|32|NZ_CP044961|CRT,CRISPRCasFinder matches to MK359319 (Gordonia phage Parada, complete genome) position: , mismatch: 8, identity: 0.75

tctcggtctcggtctcggtctcggtagtgacg	CRISPR spacer
actccgtctcggtttcggtctcggtcgaggtc	Protospacer
 *** ********.*********** * *..

92. spacer 1.48|3072917|32|NZ_CP044961|CRT,CRISPRCasFinder matches to MK359319 (Gordonia phage Parada, complete genome) position: , mismatch: 8, identity: 0.75

tctcggtctcggtctcggtctcggtagtgacg	CRISPR spacer
tttcggtctcggtcgaggtctcggtgccctcg	Protospacer
*.************  *********. .  **

93. spacer 1.48|3072917|32|NZ_CP044961|CRT,CRISPRCasFinder matches to MK376958 (Gordonia phage Brylie, complete genome) position: , mismatch: 8, identity: 0.75

tctcggtctcggtctcggtctcggtagtgacg	CRISPR spacer
actccgtctcggtttcggtctcggtcgaggtc	Protospacer
 *** ********.*********** * *..

94. spacer 1.48|3072917|32|NZ_CP044961|CRT,CRISPRCasFinder matches to MK376958 (Gordonia phage Brylie, complete genome) position: , mismatch: 8, identity: 0.75

tctcggtctcggtctcggtctcggtagtgacg	CRISPR spacer
tttcggtctcggtcgaggtctcggtgccctcg	Protospacer
*.************  *********. .  **

95. spacer 1.48|3072917|32|NZ_CP044961|CRT,CRISPRCasFinder matches to MH399781 (Gordonia phage Nadeem, complete genome) position: , mismatch: 8, identity: 0.75

tctcggtctcggtctcggtctcggtagtgacg	CRISPR spacer
actccgtctcggtttcggtctcggtcgaggtc	Protospacer
 *** ********.*********** * *..

96. spacer 1.48|3072917|32|NZ_CP044961|CRT,CRISPRCasFinder matches to MH399781 (Gordonia phage Nadeem, complete genome) position: , mismatch: 8, identity: 0.75

tctcggtctcggtctcggtctcggtagtgacg	CRISPR spacer
tttcggtctcggtcgaggtctcggtgccctcg	Protospacer
*.************  *********. .  **

97. spacer 1.48|3072917|32|NZ_CP044961|CRT,CRISPRCasFinder matches to MK967392 (Gordonia phage GrandSlam, complete genome) position: , mismatch: 8, identity: 0.75

tctcggtctcggtctcggtctcggtagtgacg	CRISPR spacer
actccgtctcggtttcggtctcggtcgaggtc	Protospacer
 *** ********.*********** * *..

98. spacer 1.48|3072917|32|NZ_CP044961|CRT,CRISPRCasFinder matches to MK967392 (Gordonia phage GrandSlam, complete genome) position: , mismatch: 8, identity: 0.75

tctcggtctcggtctcggtctcggtagtgacg	CRISPR spacer
tttcggtctcggtcgaggtctcggtgccctcg	Protospacer
*.************  *********. .  **

99. spacer 1.48|3072917|32|NZ_CP044961|CRT,CRISPRCasFinder matches to MK279893 (Gordonia phage WheatThin, complete genome) position: , mismatch: 8, identity: 0.75

tctcggtctcggtctcggtctcggtagtgacg	CRISPR spacer
actccgtctcggtttcggtctcggtcgaggtc	Protospacer
 *** ********.*********** * *..

100. spacer 1.48|3072917|32|NZ_CP044961|CRT,CRISPRCasFinder matches to MK279893 (Gordonia phage WheatThin, complete genome) position: , mismatch: 8, identity: 0.75

tctcggtctcggtctcggtctcggtagtgacg	CRISPR spacer
tttcggtctcggtcgaggtctcggtgccctcg	Protospacer
*.************  *********. .  **

101. spacer 1.48|3072917|32|NZ_CP044961|CRT,CRISPRCasFinder matches to MT701595 (Streptomyces phage Shaeky, complete genome) position: , mismatch: 8, identity: 0.75

tctcggtctcggtctcggtctcggtagtgacg	CRISPR spacer
cctcggcctcggcctcggtctcggtgtcctcg	Protospacer
.*****.*****.************. .  **

102. spacer 1.48|3072917|32|NZ_CP044961|CRT,CRISPRCasFinder matches to NC_031247 (Gordonia phage BetterKatz, complete genome) position: , mismatch: 8, identity: 0.75

tctcggtctcggtctcggtctcggtagtgacg	CRISPR spacer
actccgtctcggtttcggtctcggtcgaggtc	Protospacer
 *** ********.*********** * *..

103. spacer 1.48|3072917|32|NZ_CP044961|CRT,CRISPRCasFinder matches to NC_031247 (Gordonia phage BetterKatz, complete genome) position: , mismatch: 8, identity: 0.75

tctcggtctcggtctcggtctcggtagtgacg	CRISPR spacer
tttcggtctcggtcgaggtctcggtgccttcg	Protospacer
*.************  *********. .  **

104. spacer 1.48|3072917|32|NZ_CP044961|CRT,CRISPRCasFinder matches to MK305885 (Gordonia phage Mulch, complete genome) position: , mismatch: 8, identity: 0.75

tctcggtctcggtctcggtctcggtagtgacg	CRISPR spacer
actccgtctcggtttcggtctcggtcgaggtc	Protospacer
 *** ********.*********** * *..

105. spacer 1.48|3072917|32|NZ_CP044961|CRT,CRISPRCasFinder matches to MK305885 (Gordonia phage Mulch, complete genome) position: , mismatch: 8, identity: 0.75

tctcggtctcggtctcggtctcggtagtgacg	CRISPR spacer
tttcggtctcggtcgaggtctcggtgccctcg	Protospacer
*.************  *********. .  **

106. spacer 1.48|3072917|32|NZ_CP044961|CRT,CRISPRCasFinder matches to NZ_CP014599 (Yangia sp. CCB-MM3 plasmid unnamed3, complete sequence) position: , mismatch: 8, identity: 0.75

tctcggtctcggtctcggtctcggtagtgacg	CRISPR spacer
attccgtctcggtctcggtcttggtgctgtag	Protospacer
 .** ****************.***. **  *

107. spacer 1.48|3072917|32|NZ_CP044961|CRT,CRISPRCasFinder matches to MG269973 (TM7 phage DolZOral124_53_65, complete genome) position: , mismatch: 8, identity: 0.75

tctcggtctcggtctcggtctcggtagtgacg-----	CRISPR spacer
gctcggtctcggtttcggtttcg-----gacgcttgt	Protospacer
 ************.*****.***     ****

108. spacer 1.56|3073406|32|NZ_CP044961|CRT,CRISPRCasFinder,PILER-CR matches to MK524494 (Mycobacterium phage Rabbs, complete genome) position: , mismatch: 8, identity: 0.75

tgtaacagtccgtcgttaatcagcgcggtggg	CRISPR spacer
cccaacagtccgtcgttgaccagcgcgatatg	Protospacer
. .**************.*.*******.*. *

109. spacer 1.56|3073406|32|NZ_CP044961|CRT,CRISPRCasFinder,PILER-CR matches to KX641266 (Mycobacterium phage Terror, complete genome) position: , mismatch: 8, identity: 0.75

tgtaacagtccgtcgttaatcagcgcggtggg	CRISPR spacer
cccaacagtccgtcgttgaccagcgcgatatg	Protospacer
. .**************.*.*******.*. *

110. spacer 1.56|3073406|32|NZ_CP044961|CRT,CRISPRCasFinder,PILER-CR matches to NC_031102 (Mycobacterium phage Sneeze, complete genome) position: , mismatch: 8, identity: 0.75

tgtaacagtccgtcgttaatcagcgcggtggg	CRISPR spacer
cccaacagtccgtcgttgaccagcgcgatatg	Protospacer
. .**************.*.*******.*. *

111. spacer 1.56|3073406|32|NZ_CP044961|CRT,CRISPRCasFinder,PILER-CR matches to KX641265 (Mycobacterium phage Taheera, complete genome) position: , mismatch: 8, identity: 0.75

tgtaacagtccgtcgttaatcagcgcggtggg	CRISPR spacer
cccaacagtccgtcgttgaccagcgcgatatg	Protospacer
. .**************.*.*******.*. *

112. spacer 1.56|3073406|32|NZ_CP044961|CRT,CRISPRCasFinder,PILER-CR matches to NC_014811 (Mycolicibacterium gilvum Spyr1 plasmid pMSPYR101, complete sequence) position: , mismatch: 8, identity: 0.75

tgtaacagtccgtcgttaatcagcgcggtggg	CRISPR spacer
agggagactccggcgttgatcagcgcggtggc	Protospacer
 * .* * **** ****.*************

113. spacer 2.8|3090053|32|NZ_CP044961|CRISPRCasFinder,CRT,PILER-CR matches to CP024685 (Bacillus wiedmannii bv. thuringiensis strain FCC41 plasmid pFCC41-1-490K, complete sequence) position: , mismatch: 8, identity: 0.75

taacgaactgaataaaatgtcagaaagtgacg	CRISPR spacer
ggcagaactgaataaaatgtctgatagtgaat	Protospacer
 .  ***************** ** *****

114. spacer 2.8|3090053|32|NZ_CP044961|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP031801 (Klebsiella pneumoniae strain MSB1_8A-sc-2280397 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.75

taacgaactgaataaaatgtcagaaagtgacg	CRISPR spacer
aaatgaactgaatacaatgtcagacacgcgcg	Protospacer
 **.********** ********* *   .**

115. spacer 2.13|3090359|32|NZ_CP044961|CRISPRCasFinder,CRT,PILER-CR matches to NC_012811 (Methylorubrum extorquens AM1 megaplasmid, complete sequence) position: , mismatch: 8, identity: 0.75

tatttcgccttcggcactgacgtcaccgtcaa	CRISPR spacer
tcgaacaccttcgtcacggacgtcaccgtcga	Protospacer
*    *.****** *** ************.*

116. spacer 2.13|3090359|32|NZ_CP044961|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP053442 (Rhizobium leguminosarum bv. trifolii strain CC275e plasmid pRltCC275eD, complete sequence) position: , mismatch: 8, identity: 0.75

tatttcgccttcggcactgacgtcaccgtcaa	CRISPR spacer
cattgcgccttcggcacggacgtccaccagaa	Protospacer
.*** ************ ******  *   **

117. spacer 2.14|3090420|32|NZ_CP044961|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP028348 (Novosphingobium sp. THN1 plasmid pTHN, complete sequence) position: , mismatch: 8, identity: 0.75

-gtcgcgttcgttgccggtatagaccagcgtca	CRISPR spacer
cagcggatcc-ttgccggtatagaccagcgtat	Protospacer
 . ** .*.* ********************

118. spacer 2.14|3090420|32|NZ_CP044961|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP014128 (Pantoea vagans strain FDAARGOS_160 plasmid unnamed3, complete sequence) position: , mismatch: 8, identity: 0.75

gtcgcgttcgttgccggtatagaccagcgtca	CRISPR spacer
gaattttacgttgccggtgtagaccagtgtca	Protospacer
*   . * **********.********.****

119. spacer 2.14|3090420|32|NZ_CP044961|CRISPRCasFinder,CRT,PILER-CR matches to NC_014561 (Pantoea vagans C9-1 plasmid pPag1, complete sequence) position: , mismatch: 8, identity: 0.75

gtcgcgttcgttgccggtatagaccagcgtca	CRISPR spacer
gaattttacgttgccggtgtagaccagtgtca	Protospacer
*   . * **********.********.****

120. spacer 2.14|3090420|32|NZ_CP044961|CRISPRCasFinder,CRT,PILER-CR matches to NC_010553 (Burkholderia ambifaria MC40-6 plasmid pBMC401, complete sequence) position: , mismatch: 8, identity: 0.75

gtcgcgttcgttgccggtatagaccagcgtca	CRISPR spacer
gatccggacgttgccggtattgaacagcgtcc	Protospacer
* . **  ************ ** *******

121. spacer 2.16|3090542|32|NZ_CP044961|CRISPRCasFinder,CRT,PILER-CR matches to LQ277707 (Sequence 2 from Patent WO2016071503) position: , mismatch: 8, identity: 0.75

----gctcatgtcaaacgccatcagcgttccggcat	CRISPR spacer
aaaggct----gcaaacgccaatagcgttccggcaa	Protospacer
    ***     ********* .************

122. spacer 2.16|3090542|32|NZ_CP044961|CRISPRCasFinder,CRT,PILER-CR matches to LZ998055 (JP 2017534684-A/2: Phage Therapy) position: , mismatch: 8, identity: 0.75

----gctcatgtcaaacgccatcagcgttccggcat	CRISPR spacer
aaaggct----gcaaacgccaatagcgttccggcaa	Protospacer
    ***     ********* .************

123. spacer 2.17|3090603|32|NZ_CP044961|CRISPRCasFinder,CRT,PILER-CR matches to CP001770 (Spirosoma linguale DSM 74 plasmid pSLIN01, complete sequence) position: , mismatch: 8, identity: 0.75

aatcgccagcctcggaaatattccatcctccg	CRISPR spacer
ggttgccagccccggaagtattccatctccca	Protospacer
..*.*******.*****.*********..**.

124. spacer 1.11|3071594|33|NZ_CP044961|PILER-CR matches to MN855803 (Bacteriophage sp. isolate 108, partial genome) position: , mismatch: 9, identity: 0.727

gcgaaatagtggggaaaaacccctggttaaccc	CRISPR spacer
tttcaatattggggaaaaacccctcgttacctg	Protospacer
 .  **** *************** **** *.

125. spacer 1.33|3072932|33|NZ_CP044961|PILER-CR matches to MH509446 (Gordonia phage DelRio, complete genome) position: , mismatch: 9, identity: 0.727

tctcggtctcggtctcggtctcggtagtgacgc	CRISPR spacer
actccgtctcggtttcggtctcggtcgcggtct	Protospacer
 *** ********.*********** *.*.. .

126. spacer 1.33|3072932|33|NZ_CP044961|PILER-CR matches to NZ_CP029452 (Sinorhizobium fredii CCBAU 25509 plasmid pSF25509b, complete sequence) position: , mismatch: 9, identity: 0.727

tctcggtctcggtctcggtctcggtagtgacgc	CRISPR spacer
cctcggtctcggcctcggcctcggtctcggcct	Protospacer
.***********.*****.******  .*.* .

127. spacer 1.33|3072932|33|NZ_CP044961|PILER-CR matches to MK359319 (Gordonia phage Parada, complete genome) position: , mismatch: 9, identity: 0.727

tctcggtctcggtctcggtctcggtagtgacgc	CRISPR spacer
actccgtctcggtttcggtctcggtcgaggtct	Protospacer
 *** ********.*********** * *.. .

128. spacer 1.33|3072932|33|NZ_CP044961|PILER-CR matches to MK376958 (Gordonia phage Brylie, complete genome) position: , mismatch: 9, identity: 0.727

tctcggtctcggtctcggtctcggtagtgacgc	CRISPR spacer
actccgtctcggtttcggtctcggtcgaggtct	Protospacer
 *** ********.*********** * *.. .

129. spacer 1.33|3072932|33|NZ_CP044961|PILER-CR matches to MH399781 (Gordonia phage Nadeem, complete genome) position: , mismatch: 9, identity: 0.727

tctcggtctcggtctcggtctcggtagtgacgc	CRISPR spacer
actccgtctcggtttcggtctcggtcgaggtct	Protospacer
 *** ********.*********** * *.. .

130. spacer 1.33|3072932|33|NZ_CP044961|PILER-CR matches to MK967392 (Gordonia phage GrandSlam, complete genome) position: , mismatch: 9, identity: 0.727

tctcggtctcggtctcggtctcggtagtgacgc	CRISPR spacer
actccgtctcggtttcggtctcggtcgaggtct	Protospacer
 *** ********.*********** * *.. .

131. spacer 1.33|3072932|33|NZ_CP044961|PILER-CR matches to MK279893 (Gordonia phage WheatThin, complete genome) position: , mismatch: 9, identity: 0.727

tctcggtctcggtctcggtctcggtagtgacgc	CRISPR spacer
actccgtctcggtttcggtctcggtcgaggtct	Protospacer
 *** ********.*********** * *.. .

132. spacer 1.33|3072932|33|NZ_CP044961|PILER-CR matches to MT701595 (Streptomyces phage Shaeky, complete genome) position: , mismatch: 9, identity: 0.727

tctcggtctcggtctcggtctcggtagtgacgc	CRISPR spacer
cctcggcctcggcctcggtctcggtgtcctcgg	Protospacer
.*****.*****.************. .  **

133. spacer 1.33|3072932|33|NZ_CP044961|PILER-CR matches to NC_031247 (Gordonia phage BetterKatz, complete genome) position: , mismatch: 9, identity: 0.727

tctcggtctcggtctcggtctcggtagtgacgc	CRISPR spacer
actccgtctcggtttcggtctcggtcgaggtct	Protospacer
 *** ********.*********** * *.. .

134. spacer 1.33|3072932|33|NZ_CP044961|PILER-CR matches to MK305885 (Gordonia phage Mulch, complete genome) position: , mismatch: 9, identity: 0.727

tctcggtctcggtctcggtctcggtagtgacgc	CRISPR spacer
actccgtctcggtttcggtctcggtcgaggtct	Protospacer
 *** ********.*********** * *.. .

135. spacer 1.39|3072368|32|NZ_CP044961|CRT,CRISPRCasFinder matches to MK448228 (Klebsiella phage ST15-VIM1phi2.1, complete genome) position: , mismatch: 9, identity: 0.719

ccagaaagtgccggtagtgcctgatgaacgac	CRISPR spacer
gcatccagcgccggtagtgccggatgaactca	Protospacer
 **   **.************ *******

136. spacer 1.46|3072795|32|NZ_CP044961|CRT,CRISPRCasFinder matches to MT162468 (Synechococcus phage S-H25, complete genome) position: , mismatch: 9, identity: 0.719

tcccattcaccaacaacaatatcgccctgcaa----	CRISPR spacer
ccccaatcaccaacaataatatcgt----cagtgtt	Protospacer
.**** **********.*******.    **.

137. spacer 1.48|3072917|32|NZ_CP044961|CRT,CRISPRCasFinder matches to NZ_CP028537 (Enterobacter hormaechei strain SCEH020042 plasmid pQnrB4_020042, complete sequence) position: , mismatch: 9, identity: 0.719

------tctcggtctcggtctcggtctcggtagtgacg	CRISPR spacer
attcggtatcggtctcggtctcggtctcggat------	Protospacer
      * **********************

138. spacer 1.48|3072917|32|NZ_CP044961|CRT,CRISPRCasFinder matches to NZ_AP023191 (Escherichia coli strain TUM18530 plasmid pMTY18530-1_lncHI2, complete sequence) position: , mismatch: 9, identity: 0.719

------tctcggtctcggtctcggtctcggtagtgacg	CRISPR spacer
attcggtatcggtctcggtctcggtctcggat------	Protospacer
      * **********************

139. spacer 1.48|3072917|32|NZ_CP044961|CRT,CRISPRCasFinder matches to MN539017 (Salmonella sp. strain PJM1 plasmid pPJM1, complete sequence) position: , mismatch: 9, identity: 0.719

------tctcggtctcggtctcggtctcggtagtgacg	CRISPR spacer
attcggtatcggtctcggtctcggtctcggat------	Protospacer
      * **********************

140. spacer 1.48|3072917|32|NZ_CP044961|CRT,CRISPRCasFinder matches to MN539018 (Salmonella sp. strain OYZ4 plasmid pOYZ4, complete sequence) position: , mismatch: 9, identity: 0.719

------tctcggtctcggtctcggtctcggtagtgacg	CRISPR spacer
attcggtatcggtctcggtctcggtctcggat------	Protospacer
      * **********************

141. spacer 1.48|3072917|32|NZ_CP044961|CRT,CRISPRCasFinder matches to MT077888 (Escherichia coli plasmid p65, complete sequence) position: , mismatch: 9, identity: 0.719

------tctcggtctcggtctcggtctcggtagtgacg	CRISPR spacer
attcggtatcggtctcggtctcggtctcggat------	Protospacer
      * **********************

142. spacer 1.48|3072917|32|NZ_CP044961|CRT,CRISPRCasFinder matches to NC_009838 (Escherichia coli APEC O1 plasmid pAPEC-O1-R, complete sequence) position: , mismatch: 9, identity: 0.719

------tctcggtctcggtctcggtctcggtagtgacg	CRISPR spacer
attcggtatcggtctcggtctcggtctcggat------	Protospacer
      * **********************

143. spacer 1.48|3072917|32|NZ_CP044961|CRT,CRISPRCasFinder matches to NZ_CP044306 (Escherichia coli strain C27A plasmid pC27A-CTX-M-55, complete sequence) position: , mismatch: 9, identity: 0.719

------tctcggtctcggtctcggtctcggtagtgacg	CRISPR spacer
attcggtatcggtctcggtctcggtctcggat------	Protospacer
      * **********************

144. spacer 1.48|3072917|32|NZ_CP044961|CRT,CRISPRCasFinder matches to NZ_CP039170 (Salmonella enterica subsp. enterica serovar Goldcoast strain Sal-5364 plasmid pSal-5364, complete sequence) position: , mismatch: 9, identity: 0.719

------tctcggtctcggtctcggtctcggtagtgacg	CRISPR spacer
attcggtatcggtctcggtctcggtctcggat------	Protospacer
      * **********************

145. spacer 1.48|3072917|32|NZ_CP044961|CRT,CRISPRCasFinder matches to CP048299 (Salmonella enterica subsp. enterica serovar Schwarzengrund strain WAPHL_SAL-A00527 plasmid pN1566-2, complete sequence) position: , mismatch: 9, identity: 0.719

------tctcggtctcggtctcggtctcggtagtgacg	CRISPR spacer
attcggtatcggtctcggtctcggtctcggat------	Protospacer
      * **********************

146. spacer 1.48|3072917|32|NZ_CP044961|CRT,CRISPRCasFinder matches to CP048303 (Salmonella enterica subsp. enterica serovar Schwarzengrund strain WAPHL-SAL-A00375 plasmid p28945-2, complete sequence) position: , mismatch: 9, identity: 0.719

------tctcggtctcggtctcggtctcggtagtgacg	CRISPR spacer
attcggtatcggtctcggtctcggtctcggat------	Protospacer
      * **********************

147. spacer 1.48|3072917|32|NZ_CP044961|CRT,CRISPRCasFinder matches to NZ_CP037959 (Salmonella enterica subsp. enterica serovar Goldcoast strain R18.0877 plasmid pR18.0877_278k, complete sequence) position: , mismatch: 9, identity: 0.719

------tctcggtctcggtctcggtctcggtagtgacg	CRISPR spacer
attcggtatcggtctcggtctcggtctcggat------	Protospacer
      * **********************

148. spacer 1.48|3072917|32|NZ_CP044961|CRT,CRISPRCasFinder matches to NZ_CP039861 (Salmonella enterica subsp. enterica serovar 1,4,[5],12:i:- strain PNCS014880 plasmid p16-6773.1, complete sequence) position: , mismatch: 9, identity: 0.719

------tctcggtctcggtctcggtctcggtagtgacg	CRISPR spacer
attcggtatcggtctcggtctcggtctcggat------	Protospacer
      * **********************

149. spacer 1.48|3072917|32|NZ_CP044961|CRT,CRISPRCasFinder matches to NZ_CP048776 (Salmonella enterica subsp. enterica serovar Agona strain SG17-135 plasmid pSG17-135-HI2, complete sequence) position: , mismatch: 9, identity: 0.719

------tctcggtctcggtctcggtctcggtagtgacg	CRISPR spacer
attcggtatcggtctcggtctcggtctcggat------	Protospacer
      * **********************

150. spacer 1.48|3072917|32|NZ_CP044961|CRT,CRISPRCasFinder matches to NC_019114 (Salmonella enterica subsp. enterica serovar Heidelberg plasmid pSH111_227, complete sequence) position: , mismatch: 9, identity: 0.719

------tctcggtctcggtctcggtctcggtagtgacg	CRISPR spacer
attcggtatcggtctcggtctcggtctcggat------	Protospacer
      * **********************

151. spacer 1.48|3072917|32|NZ_CP044961|CRT,CRISPRCasFinder matches to NZ_AP023198 (Escherichia coli strain TUM18780 plasmid pMTY18780-1_lncHI2, complete sequence) position: , mismatch: 9, identity: 0.719

------tctcggtctcggtctcggtctcggtagtgacg	CRISPR spacer
attcggtatcggtctcggtctcggtctcggat------	Protospacer
      * **********************

152. spacer 1.48|3072917|32|NZ_CP044961|CRT,CRISPRCasFinder matches to NZ_CP043223 (Salmonella enterica subsp. enterica serovar Bredeney strain SA20114778WT plasmid pET1.1-IncH, complete sequence) position: , mismatch: 9, identity: 0.719

------tctcggtctcggtctcggtctcggtagtgacg	CRISPR spacer
attcggtatcggtctcggtctcggtctcggat------	Protospacer
      * **********************

153. spacer 1.48|3072917|32|NZ_CP044961|CRT,CRISPRCasFinder matches to NZ_CP043223 (Salmonella enterica subsp. enterica serovar Bredeney strain SA20114778WT plasmid pET1.1-IncH, complete sequence) position: , mismatch: 9, identity: 0.719

------tctcggtctcggtctcggtctcggtagtgacg	CRISPR spacer
attcggtatcggtctcggtctcggtctcggat------	Protospacer
      * **********************

154. spacer 1.48|3072917|32|NZ_CP044961|CRT,CRISPRCasFinder matches to NZ_CP027411 (Salmonella enterica strain FDAARGOS_319 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.719

------tctcggtctcggtctcggtctcggtagtgacg	CRISPR spacer
attcggtatcggtctcggtctcggtctcggat------	Protospacer
      * **********************

155. spacer 1.48|3072917|32|NZ_CP044961|CRT,CRISPRCasFinder matches to JQ807227 (Environmental Halophage eHP-6, partial genome) position: , mismatch: 9, identity: 0.719

tctcggtctcggtctcggtctcggtagtgacg	CRISPR spacer
catcggtctcggtctcggtcccggttccagtg	Protospacer
. ******************.****  ....*

156. spacer 1.48|3072917|32|NZ_CP044961|CRT,CRISPRCasFinder matches to NZ_CP029452 (Sinorhizobium fredii CCBAU 25509 plasmid pSF25509b, complete sequence) position: , mismatch: 9, identity: 0.719

tctcggtctcggtctcggtctcggtagtgacg	CRISPR spacer
cctcggcctcggtctcggcctcggcgtcggtg	Protospacer
.*****.***********.*****.. .*..*

157. spacer 1.48|3072917|32|NZ_CP044961|CRT,CRISPRCasFinder matches to NC_019201 (Streptomyces sp. x4(2010) plasmid pTSC1, complete sequence) position: , mismatch: 9, identity: 0.719

tctcggtctcggtctcggtctcggtagtgacg	CRISPR spacer
gctcggtctcagtctcggtctcagtctcgcgt	Protospacer
 *********.***********.**  .*

158. spacer 2.10|3090176|32|NZ_CP044961|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP051686 (Duganella sp. GN2-R2 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.719

tgccagtgactacagaagcgtcgctatcgggg	CRISPR spacer
cacgcctgactaccgaagtgtcgctatcggac	Protospacer
..*   ******* ****.***********.

159. spacer 2.14|3090420|32|NZ_CP044961|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP045722 (Pantoea eucalypti strain LMG 24197 plasmid unnamed2, complete sequence) position: , mismatch: 9, identity: 0.719

gtcgcgttcgttgccggtatagaccagcgtca	CRISPR spacer
aaacttgacgttgccggtatagatcagcgtca	Protospacer
.   .   ***************.********

160. spacer 2.14|3090420|32|NZ_CP044961|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP022519 (Pantoea vagans strain FBS135 plasmid pPant3, complete sequence) position: , mismatch: 9, identity: 0.719

gtcgcgttcgttgccggtatagaccagcgtca	CRISPR spacer
aaacttgacgttgccggtatagatcagcgtca	Protospacer
.   .   ***************.********

161. spacer 2.14|3090420|32|NZ_CP044961|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP028351 (Pantoea vagans strain PV989 plasmid pPV989-167, complete sequence) position: , mismatch: 9, identity: 0.719

gtcgcgttcgttgccggtatagaccagcgtca	CRISPR spacer
aaattttacgttgccggtgtagaccagtgtca	Protospacer
.   . * **********.********.****

162. spacer 2.18|3090664|32|NZ_CP044961|CRISPRCasFinder,CRT,PILER-CR matches to MN062720 (Microbacterium phage FuzzBuster, complete genome) position: , mismatch: 9, identity: 0.719

aggaactaaacagcctgaccgttgaggatctg	CRISPR spacer
tcctcctggacaggctgaccgttgacgatctg	Protospacer
     **..**** *********** ******

163. spacer 2.19|3090725|32|NZ_CP044961|CRISPRCasFinder,CRT,PILER-CR matches to MN694645 (Marine virus AFVG_250M761, complete genome) position: , mismatch: 9, identity: 0.719

accggacaaatcttttttttcctgttcctgtt	CRISPR spacer
gcatcattaatcctttttttcctgttactgta	Protospacer
.*   *. ****.************* ****

164. spacer 2.22|3090908|32|NZ_CP044961|CRISPRCasFinder,CRT,PILER-CR matches to DQ674738 (Aeromonas phage phiO18P, complete genome) position: , mismatch: 9, identity: 0.719

gggcactatgaacggatcggcgctgatgccgg	CRISPR spacer
cagtttgctgaactgctcggcgctgatgccgg	Protospacer
 .*. .  ***** * ****************

165. spacer 2.22|3090908|32|NZ_CP044961|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP031166 (Euzebya sp. DY32-46 plasmid pEDY32-46I, complete sequence) position: , mismatch: 9, identity: 0.719

gggcactatgaacggatcggcgctgatgccgg	CRISPR spacer
cctgacggtgaaccggtcggcgctgatgccgc	Protospacer
    ** .***** *.***************

166. spacer 2.22|3090908|32|NZ_CP044961|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP022367 (Azospirillum sp. TSH58 plasmid TSH58_p02, complete sequence) position: , mismatch: 9, identity: 0.719

gggcactatgaacggatcggcgctgatgccgg	CRISPR spacer
cagggcgtcgaactgatcggcgctcatgccgg	Protospacer
 .* .*  .**** ********** *******

167. spacer 2.23|3090969|32|NZ_CP044961|CRISPRCasFinder,CRT,PILER-CR matches to MN693046 (Marine virus AFVG_25M413, complete genome) position: , mismatch: 9, identity: 0.719

ggtaaagccacaccattttttattgacctcgc	CRISPR spacer
tctgaaaccacaccattttttgttgaccctaa	Protospacer
  *.**.**************.******...

168. spacer 2.23|3090969|32|NZ_CP044961|CRISPRCasFinder,CRT,PILER-CR matches to MN693008 (Marine virus AFVG_117M9, complete genome) position: , mismatch: 9, identity: 0.719

ggtaaagccacaccattttttattgacctcgc	CRISPR spacer
tctgaaaccacaccattttttgttgaccctaa	Protospacer
  *.**.**************.******...

169. spacer 1.1|3071532|32|NZ_CP044961|CRISPRCasFinder,CRT matches to NC_016113 (Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCAT, complete sequence) position: , mismatch: 10, identity: 0.688

ttttcagcccttgtcgactgcggaacgcccct	CRISPR spacer
tccctcaccctcgtcgactgcggaccgcccgg	Protospacer
*.... .****.************ *****

170. spacer 1.1|3071532|32|NZ_CP044961|CRISPRCasFinder,CRT matches to NC_017585 (Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCATT, complete sequence) position: , mismatch: 10, identity: 0.688

ttttcagcccttgtcgactgcggaacgcccct	CRISPR spacer
tccctcaccctcgtcgactgcggaccgcccgg	Protospacer
*.... .****.************ *****

171. spacer 1.32|3072871|33|NZ_CP044961|PILER-CR matches to NZ_CP020539 (Sphingobium herbicidovorans strain MH plasmid pMSHV, complete sequence) position: , mismatch: 10, identity: 0.697

cgttgcgtcaggttgatccagtgcgtcagcggc	CRISPR spacer
tcaaacgccaggttgatcaagtgcgtcagattc	Protospacer
.   .**.********** **********   *

172. spacer 1.33|3072932|33|NZ_CP044961|PILER-CR matches to NZ_CP045074 (Paracoccus kondratievae strain BJQ0001 plasmid unnamed1, complete sequence) position: , mismatch: 10, identity: 0.697

tctcggtctcggtctcggtctcggtagtgacgc	CRISPR spacer
cgcgcagcccggtctcggtctcggttgtggcgc	Protospacer
. .  . *.**************** ***.***

173. spacer 1.37|3072246|32|NZ_CP044961|CRT,CRISPRCasFinder matches to NZ_AP022571 (Mycolicibacterium poriferae strain JCM 12603 plasmid pJCM12603, complete sequence) position: , mismatch: 10, identity: 0.688

tggaccgatggggccaacatcgccgaacgtgg	CRISPR spacer
cacctggatgggggccacatcgccgaacgagt	Protospacer
..  . ******* * ************* *

174. spacer 1.46|3072795|32|NZ_CP044961|CRT,CRISPRCasFinder matches to LN681539 (Clostridium phage phiCD505, complete genome) position: , mismatch: 10, identity: 0.688

tcccattcaccaacaacaatatcgccctgcaa	CRISPR spacer
tcccattcctcaacaacaatatcattttcact	Protospacer
******** .*************....*

175. spacer 1.46|3072795|32|NZ_CP044961|CRT,CRISPRCasFinder matches to JX145341 (Clostridium phage phiMMP02, complete genome) position: , mismatch: 10, identity: 0.688

tcccattcaccaacaacaatatcgccctgcaa	CRISPR spacer
tcccattcctcaacaacaatatcattttcact	Protospacer
******** .*************....*

176. spacer 1.46|3072795|32|NZ_CP044961|CRT,CRISPRCasFinder matches to NC_011398 (Clostridium phage phiCD27, complete genome) position: , mismatch: 10, identity: 0.688

tcccattcaccaacaacaatatcgccctgcaa	CRISPR spacer
tcccattcctcaacaacaatatcattttcact	Protospacer
******** .*************....*

177. spacer 1.46|3072795|32|NZ_CP044961|CRT,CRISPRCasFinder matches to NC_048642 (Clostridium phage CDKM9, complete genome) position: , mismatch: 10, identity: 0.688

tcccattcaccaacaacaatatcgccctgcaa	CRISPR spacer
tcccattcctcaacaacaatatcattttcact	Protospacer
******** .*************....*

178. spacer 1.46|3072795|32|NZ_CP044961|CRT,CRISPRCasFinder matches to KX228400 (Clostridium phage CDKM15, complete genome) position: , mismatch: 10, identity: 0.688

tcccattcaccaacaacaatatcgccctgcaa	CRISPR spacer
tcccattcctcaacaacaatatcattttcact	Protospacer
******** .*************....*

179. spacer 1.47|3072856|32|NZ_CP044961|CRT,CRISPRCasFinder matches to NZ_CP020539 (Sphingobium herbicidovorans strain MH plasmid pMSHV, complete sequence) position: , mismatch: 10, identity: 0.688

cgttgcgtcaggttgatccagtgcgtcagcgg	CRISPR spacer
tcaaacgccaggttgatcaagtgcgtcagatt	Protospacer
.   .**.********** **********

180. spacer 1.48|3072917|32|NZ_CP044961|CRT,CRISPRCasFinder matches to NZ_KY689633 (Escherichia coli strain 100R plasmid p100R, complete sequence) position: , mismatch: 10, identity: 0.688

------tctcggtctcggtctcggtctcggtagtgacg	CRISPR spacer
tatcggtatcggtatcggtctcggtctcggat------	Protospacer
      * ***** ****************

181. spacer 1.48|3072917|32|NZ_CP044961|CRT,CRISPRCasFinder matches to NZ_KY689632 (Escherichia coli strain 19-M12 plasmid p19M12, complete sequence) position: , mismatch: 10, identity: 0.688

------tctcggtctcggtctcggtctcggtagtgacg	CRISPR spacer
tatcggtatcggtatcggtctcggtctcggat------	Protospacer
      * ***** ****************

182. spacer 1.48|3072917|32|NZ_CP044961|CRT,CRISPRCasFinder matches to NZ_CP045446 (Salmonella enterica subsp. enterica serovar Schwarzengrund strain 9355 plasmid p280_9355, complete sequence) position: , mismatch: 10, identity: 0.688

------tctcggtctcggtctcggtctcggtagtgacg	CRISPR spacer
tatcggtatcggtatcggtctcggtctcggat------	Protospacer
      * ***** ****************

183. spacer 1.48|3072917|32|NZ_CP044961|CRT,CRISPRCasFinder matches to NZ_KU743384 (Escherichia coli strain SA26 plasmid pSA26-MCR-1, complete sequence) position: , mismatch: 10, identity: 0.688

------tctcggtctcggtctcggtctcggtagtgacg	CRISPR spacer
tatcggtatcggtatcggtctcggtctcggat------	Protospacer
      * ***** ****************

184. spacer 1.48|3072917|32|NZ_CP044961|CRT,CRISPRCasFinder matches to NZ_KU254578 (Escherichia coli strain YD786 plasmid pYD786-1, complete sequence) position: , mismatch: 10, identity: 0.688

------tctcggtctcggtctcggtctcggtagtgacg	CRISPR spacer
tatcggtatcggtatcggtctcggtctcggat------	Protospacer
      * ***** ****************

185. spacer 1.48|3072917|32|NZ_CP044961|CRT,CRISPRCasFinder matches to NZ_KX129782 (Escherichia coli strain S38 plasmid pS38, complete sequence) position: , mismatch: 10, identity: 0.688

------tctcggtctcggtctcggtctcggtagtgacg	CRISPR spacer
tatcggtatcggtatcggtctcggtctcggat------	Protospacer
      * ***** ****************

186. spacer 1.48|3072917|32|NZ_CP044961|CRT,CRISPRCasFinder matches to NZ_CP015833 (Escherichia coli O157 strain 180-PT54 plasmid unnamed, complete sequence) position: , mismatch: 10, identity: 0.688

------tctcggtctcggtctcggtctcggtagtgacg	CRISPR spacer
tatcggtatcggtatcggtctcggtctcggat------	Protospacer
      * ***** ****************

187. spacer 1.48|3072917|32|NZ_CP044961|CRT,CRISPRCasFinder matches to LT221036 (Yersinia pseudotuberculosis strain Yps.F1, plasmid pYps.F1 complete sequence) position: , mismatch: 10, identity: 0.688

------tctcggtctcggtctcggtctcggtagtgacg	CRISPR spacer
tatcggtatcggtatcggtctcggtctcggat------	Protospacer
      * ***** ****************

188. spacer 1.48|3072917|32|NZ_CP044961|CRT,CRISPRCasFinder matches to CP019195 (Salmonella enterica subsp. enterica serovar Senftenberg str. ATCC 43845 plasmid pATCC43845, complete sequence) position: , mismatch: 10, identity: 0.688

------tctcggtctcggtctcggtctcggtagtgacg	CRISPR spacer
tatcggtatcggtatcggtctcggtctcggat------	Protospacer
      * ***** ****************

189. spacer 1.48|3072917|32|NZ_CP044961|CRT,CRISPRCasFinder matches to NZ_CP045449 (Salmonella enterica subsp. enterica serovar Schwarzengrund strain 12888 plasmid p280_12888, complete sequence) position: , mismatch: 10, identity: 0.688

------tctcggtctcggtctcggtctcggtagtgacg	CRISPR spacer
tatcggtatcggtatcggtctcggtctcggat------	Protospacer
      * ***** ****************

190. spacer 1.48|3072917|32|NZ_CP044961|CRT,CRISPRCasFinder matches to NZ_CP015096 (Pelagibaca abyssi strain JLT2014 plasmid pPABY8, complete sequence) position: , mismatch: 10, identity: 0.688

------tctcggtctcggtctcggtctcggtagtgacg	CRISPR spacer
cctcggtctcgtcctcggtctcggcctcggtc------	Protospacer
      ***** .***********.******

191. spacer 1.48|3072917|32|NZ_CP044961|CRT,CRISPRCasFinder matches to MN732922 (Escherichia coli strain 49K plasmid unnamed, complete sequence) position: , mismatch: 10, identity: 0.688

------tctcggtctcggtctcggtctcggtagtgacg	CRISPR spacer
tatcggtatcggtatcggtctcggtctcggat------	Protospacer
      * ***** ****************

192. spacer 1.48|3072917|32|NZ_CP044961|CRT,CRISPRCasFinder matches to NZ_CP020493 (Salmonella enterica subsp. enterica strain 08-00436 plasmid pSE08-00436-1, complete sequence) position: , mismatch: 10, identity: 0.688

------tctcggtctcggtctcggtctcggtagtgacg	CRISPR spacer
tatcggtatcggtatcggtctcggtctcggat------	Protospacer
      * ***** ****************

193. spacer 1.48|3072917|32|NZ_CP044961|CRT,CRISPRCasFinder matches to CP031284 (Escherichia fergusonii strain 40A plasmid p280_40A, complete sequence) position: , mismatch: 10, identity: 0.688

------tctcggtctcggtctcggtctcggtagtgacg	CRISPR spacer
tatcggtatcggtatcggtctcggtctcggat------	Protospacer
      * ***** ****************

194. spacer 1.48|3072917|32|NZ_CP044961|CRT,CRISPRCasFinder matches to CP042895 (Escherichia coli strain CFSAN061772 plasmid pCFSAN061772_02, complete sequence) position: , mismatch: 10, identity: 0.688

------tctcggtctcggtctcggtctcggtagtgacg	CRISPR spacer
tatcggtatcggtatcggtctcggtctcggat------	Protospacer
      * ***** ****************

195. spacer 1.48|3072917|32|NZ_CP044961|CRT,CRISPRCasFinder matches to NZ_CP022735 (Escherichia coli strain SA186 plasmid pSA186_MCR1, complete sequence) position: , mismatch: 10, identity: 0.688

------tctcggtctcggtctcggtctcggtagtgacg	CRISPR spacer
tatcggtatcggtatcggtctcggtctcggat------	Protospacer
      * ***** ****************

196. spacer 1.48|3072917|32|NZ_CP044961|CRT,CRISPRCasFinder matches to CP042898 (Escherichia coli strain CFSAN061771 plasmid pCFSAN061771_02, complete sequence) position: , mismatch: 10, identity: 0.688

------tctcggtctcggtctcggtctcggtagtgacg	CRISPR spacer
tatcggtatcggtatcggtctcggtctcggat------	Protospacer
      * ***** ****************

197. spacer 1.48|3072917|32|NZ_CP044961|CRT,CRISPRCasFinder matches to NZ_CP022165 (Escherichia coli strain M160133 plasmid pM160133_p1, complete sequence) position: , mismatch: 10, identity: 0.688

------tctcggtctcggtctcggtctcggtagtgacg	CRISPR spacer
tatcggtatcggtatcggtctcggtctcggat------	Protospacer
      * ***** ****************

198. spacer 1.48|3072917|32|NZ_CP044961|CRT,CRISPRCasFinder matches to NZ_CP012931 (Salmonella enterica subsp. enterica serovar Heidelberg strain N13-01290 plasmid pN13-01290_23, complete sequence) position: , mismatch: 10, identity: 0.688

------tctcggtctcggtctcggtctcggtagtgacg	CRISPR spacer
tatcggtatcggtatcggtctcggtctcggat------	Protospacer
      * ***** ****************

199. spacer 1.48|3072917|32|NZ_CP044961|CRT,CRISPRCasFinder matches to NZ_CP023143 (Escherichia coli strain CFSAN061770 plasmid pEGY1-MCR-1, complete sequence) position: , mismatch: 10, identity: 0.688

------tctcggtctcggtctcggtctcggtagtgacg	CRISPR spacer
tatcggtatcggtatcggtctcggtctcggat------	Protospacer
      * ***** ****************

200. spacer 1.48|3072917|32|NZ_CP044961|CRT,CRISPRCasFinder matches to NZ_CP026936 (Escherichia coli strain CFS3292 plasmid pCFS3292-1, complete sequence) position: , mismatch: 10, identity: 0.688

------tctcggtctcggtctcggtctcggtagtgacg	CRISPR spacer
tatcggtatcggtatcggtctcggtctcggat------	Protospacer
      * ***** ****************

201. spacer 1.48|3072917|32|NZ_CP044961|CRT,CRISPRCasFinder matches to NZ_CP025402 (Escherichia coli strain MS8345 plasmid pMS8345A, complete sequence) position: , mismatch: 10, identity: 0.688

------tctcggtctcggtctcggtctcggtagtgacg	CRISPR spacer
tatcggtatcggtatcggtctcggtctcggat------	Protospacer
      * ***** ****************

202. spacer 1.48|3072917|32|NZ_CP044961|CRT,CRISPRCasFinder matches to NZ_CP026933 (Escherichia coli strain CFS3273 plasmid pCFS3273-1, complete sequence) position: , mismatch: 10, identity: 0.688

------tctcggtctcggtctcggtctcggtagtgacg	CRISPR spacer
tatcggtatcggtatcggtctcggtctcggat------	Protospacer
      * ***** ****************

203. spacer 1.48|3072917|32|NZ_CP044961|CRT,CRISPRCasFinder matches to NZ_MH924589 (Escherichia coli strain RDB9 plasmid pRDB9, complete sequence) position: , mismatch: 10, identity: 0.688

------tctcggtctcggtctcggtctcggtagtgacg	CRISPR spacer
tatcggtatcggtatcggtctcggtctcggat------	Protospacer
      * ***** ****************

204. spacer 1.48|3072917|32|NZ_CP044961|CRT,CRISPRCasFinder matches to NZ_MH208235 (Escherichia coli strain APECA2 plasmid pJMA2, complete sequence) position: , mismatch: 10, identity: 0.688

------tctcggtctcggtctcggtctcggtagtgacg	CRISPR spacer
tatcggtatcggtatcggtctcggtctcggat------	Protospacer
      * ***** ****************

205. spacer 1.48|3072917|32|NZ_CP044961|CRT,CRISPRCasFinder matches to NZ_MK169211 (Escherichia coli strain DUK14-2 plasmid pMOO-32, complete sequence) position: , mismatch: 10, identity: 0.688

------tctcggtctcggtctcggtctcggtagtgacg	CRISPR spacer
tatcggtatcggtatcggtctcggtctcggat------	Protospacer
      * ***** ****************

206. spacer 1.48|3072917|32|NZ_CP044961|CRT,CRISPRCasFinder matches to NZ_CP016838 (Salmonella enterica subsp. enterica serovar Senftenberg strain 775W (ATCC 43845) plasmid pSSE-ATCC-43845, complete sequence) position: , mismatch: 10, identity: 0.688

------tctcggtctcggtctcggtctcggtagtgacg	CRISPR spacer
tatcggtatcggtatcggtctcggtctcggat------	Protospacer
      * ***** ****************

207. spacer 1.48|3072917|32|NZ_CP044961|CRT,CRISPRCasFinder matches to NZ_CP045074 (Paracoccus kondratievae strain BJQ0001 plasmid unnamed1, complete sequence) position: , mismatch: 10, identity: 0.688

tctcggtctcggtctcggtctcggtagtgacg	CRISPR spacer
cgcgcagcccggtctcggtctcggttgtggcg	Protospacer
. .  . *.**************** ***.**

208. spacer 2.1|3089626|32|NZ_CP044961|CRISPRCasFinder,CRT matches to NZ_CP054615 (Azospirillum oryzae strain KACC 14407 plasmid unnamed1, complete sequence) position: , mismatch: 10, identity: 0.688

atcttcatattgcgtgacgctgccgatgaacg	CRISPR spacer
tgccggatatggcgtgacgatgccgatgatgt	Protospacer
  *.  **** ******** *********

209. spacer 2.4|3089809|32|NZ_CP044961|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP044072 (Pseudomonas oryzihabitans strain FDAARGOS_657 plasmid unnamed1, complete sequence) position: , mismatch: 10, identity: 0.688

tgcccgttctgcctcttcgcactctcgatcaa	CRISPR spacer
tgcccgttctgtctcttggcactgccaccttc	Protospacer
***********.***** ***** .*. ..

210. spacer 2.18|3090664|32|NZ_CP044961|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP019257 (Escherichia coli strain 13TMH22 plasmid p13TMH22-1, complete sequence) position: , mismatch: 10, identity: 0.688

aggaactaaacagcctgaccgttgaggatctg	CRISPR spacer
ggtttaccgacagcctgacggttgacgatctg	Protospacer
.*    . .********** ***** ******

211. spacer 2.18|3090664|32|NZ_CP044961|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP019274 (Escherichia coli strain 13P477T plasmid p13P477T-1, complete sequence) position: , mismatch: 10, identity: 0.688

aggaactaaacagcctgaccgttgaggatctg	CRISPR spacer
ggtttaccgacagcctgacggttgacgatctg	Protospacer
.*    . .********** ***** ******

212. spacer 2.18|3090664|32|NZ_CP044961|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP019275 (Escherichia coli strain 13P477T plasmid p13P477T-2, complete sequence) position: , mismatch: 10, identity: 0.688

aggaactaaacagcctgaccgttgaggatctg	CRISPR spacer
ggtttaccgacagcctgacggttgacgatctg	Protospacer
.*    . .********** ***** ******

213. spacer 2.18|3090664|32|NZ_CP044961|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP019279 (Escherichia coli strain 13P477T plasmid p13P477T-6, complete sequence) position: , mismatch: 10, identity: 0.688

aggaactaaacagcctgaccgttgaggatctg	CRISPR spacer
ggtttaccgacagcctgacggttgacgatctg	Protospacer
.*    . .********** ***** ******

214. spacer 2.18|3090664|32|NZ_CP044961|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP019246 (Escherichia coli strain Combat13F7 plasmid pCombat13F7-1, complete sequence) position: , mismatch: 10, identity: 0.688

aggaactaaacagcctgaccgttgaggatctg	CRISPR spacer
ggtttaccgacagcctgacggttgacgatctg	Protospacer
.*    . .********** ***** ******

215. spacer 2.18|3090664|32|NZ_CP044961|CRISPRCasFinder,CRT,PILER-CR matches to NC_049342 (Escherichia phage 500465-1, complete genome) position: , mismatch: 10, identity: 0.688

aggaactaaacagcctgaccgttgaggatctg	CRISPR spacer
ggtttaccgacagcctgacggttgacgatctg	Protospacer
.*    . .********** ***** ******

216. spacer 2.18|3090664|32|NZ_CP044961|CRISPRCasFinder,CRT,PILER-CR matches to KY271398 (Klebsiella phage 4 LV-2017, complete genome) position: , mismatch: 10, identity: 0.688

aggaactaaacagcctgaccgttgaggatctg	CRISPR spacer
ggtttaccgacagcctgacggttgacgatctg	Protospacer
.*    . .********** ***** ******

217. spacer 2.18|3090664|32|NZ_CP044961|CRISPRCasFinder,CRT,PILER-CR matches to CP025900 (Escherichia phage sp., complete genome) position: , mismatch: 10, identity: 0.688

aggaactaaacagcctgaccgttgaggatctg	CRISPR spacer
ggtttaccgacagcctgacggttgacgatctg	Protospacer
.*    . .********** ***** ******

218. spacer 1.33|3072932|33|NZ_CP044961|PILER-CR matches to NC_019201 (Streptomyces sp. x4(2010) plasmid pTSC1, complete sequence) position: , mismatch: 11, identity: 0.667

------tctcggtctcggtctcggtctcggtagtgacgc	CRISPR spacer
gctcggtctcagtctcggtctcagtctcgcgtg------	Protospacer
      ****.***********.******   *

219. spacer 2.22|3090908|32|NZ_CP044961|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP054036 (Rhizobium sp. JKLM13E plasmid pPR13E05, complete sequence) position: , mismatch: 11, identity: 0.656

gggcactatgaacggatcggcgctgatgccgg	CRISPR spacer
atagactaggagcggatcggcgctgatcggaa	Protospacer
. . **** **.***************   ..

220. spacer 2.22|3090908|32|NZ_CP044961|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP022568 (Rhizobium leguminosarum bv. viciae strain BIHB 1148 plasmid pSK04, complete sequence) position: , mismatch: 11, identity: 0.656

gggcactatgaacggatcggcgctgatgccgg	CRISPR spacer
atagactaggagcggatcggcgctgatcggaa	Protospacer
. . **** **.***************   ..

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

364500 : 376502

Enterobacteria_phage(33.33%)

integrase

attL 353307:353320|attR 371807:371820

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
353307:353320	attL	NA	NA	NA	NA
WP_001043675.1\|364500_365553_-	phosphoporin PhoE	Q1MVN1	Enterobacteria_phage	1.7e-112	58.5
WP_001285275.1\|365835_366939_+	glutamate 5-kinase	A0A1X9I5D0	Streptococcus_phage	6.9e-61	39.8
WP_000893231.1\|366950_368201_+	glutamate-5-semialdehyde dehydrogenase	A0A1X9I5D4	Streptococcus_phage	1.6e-98	47.5
WP_001529718.1\|368557_369772_+\|integrase	tyrosine-type recombinase/integrase	Q7M297	Enterobacteria_phage	9.7e-133	56.5
WP_001304884.1\|369937_370153_-	hypothetical protein	NA	NA	NA	NA
WP_000035054.1\|370200_370404_+	AlpA family transcriptional regulator	A0A1V0E8E5	Vibrio_phage	4.7e-08	50.9
WP_001529719.1\|370403_370835_+	hypothetical protein	A0A1W6JPH9	Morganella_phage	3.9e-28	49.0
WP_033567214.1\|370847_371681_+	antA/AntB antirepressor family protein	G9L6G1	Escherichia_phage	9.0e-21	47.5
WP_000476150.1\|371673_371856_+	DUF4222 domain-containing protein	NA	NA	NA	NA
371807:371820	attR	NA	NA	NA	NA
WP_032150717.1\|371849_372878_+	ash family protein	Q8W643	Enterobacteria_phage	1.0e-13	53.3
WP_001065738.1\|372870_373065_+	hypothetical protein	NA	NA	NA	NA
WP_001024675.1\|373061_373325_+	hypothetical protein	NA	NA	NA	NA
WP_000181940.1\|373321_373543_+	hypothetical protein	NA	NA	NA	NA
WP_001529721.1\|373535_374138_+	hypothetical protein	NA	NA	NA	NA
WP_001529722.1\|374150_376502_+	hypothetical protein	A0A1W6JPG0	Morganella_phage	6.8e-74	48.5

DBSCAN-SWA_2

994956 : 1003688

Dickeya_phage(14.29%)

transposase,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001201751.1\|994956_996075_+	macrolide transporter subunit MacA	A0A140XAI1	Dickeya_phage	1.4e-08	38.9
WP_000125877.1\|996071_998018_+	macrolide ABC transporter ATP-binding protein/permease MacB	G9BWD6	Planktothrix_phage	2.0e-39	43.1
WP_000447499.1\|998147_998369_-	cold shock-like protein CspD	A0A2H4N7Y6	Lake_Baikal_phage	9.3e-18	64.2
WP_000520789.1\|998692_999013_+\|protease	ATP-dependent Clp protease adapter ClpS	A0A1B1IT64	uncultured_Mediterranean_phage	4.5e-13	45.7
WP_000934063.1\|999043_1001320_+\|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	A0A223W0B1	Agrobacterium_phage	6.2e-165	42.3
WP_000502119.1\|1001511_1001970_+\|transposase	IS200/IS605-like element IS200F family transposase	I4AZI8	Saccharomonospora_phage	1.0e-13	31.5
WP_119920232.1\|1002142_1002418_+	hypothetical protein	NA	NA	NA	NA
WP_085983316.1\|1002432_1003688_-\|transposase	IS3-like element ISSen1 family transposase	Q6H9S3	Enterobacteria_phage	5.4e-17	33.9

DBSCAN-SWA_3

1053714 : 1144631

Salmonella_phage(60.87%)

terminase,lysis,tail,protease,integrase,holin,tRNA

attL 1056623:1056642|attR 1120519:1120538

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001154025.1\|1053714_1054518_+\|tRNA	tRNA uridine 5-oxyacetic acid(34) methyltransferase CmoM	NA	NA	NA	NA
WP_001288828.1\|1054510_1055833_+	chromosome partition protein MukF	NA	NA	NA	NA
WP_000060025.1\|1055813_1056518_+	chromosome partition protein MukE	NA	NA	NA	NA
WP_000572724.1\|1056517_1060984_+	chromosome partition protein MukB	NA	NA	NA	NA
1056623:1056642	attL	NA	NA	NA	NA
WP_000925872.1\|1061328_1063170_+	L,D-transpeptidase	NA	NA	NA	NA
WP_000357052.1\|1063429_1063978_+	YcbK family protein	A0A0K1LKR7	Rhodobacter_phage	1.2e-05	33.7
WP_001109471.1\|1064005_1064653_+	MBL fold metallo-hydrolase	NA	NA	NA	NA
WP_000462653.1\|1064714_1065905_-	aspartate/tyrosine/aromatic aminotransferase	NA	NA	NA	NA
WP_000977713.1\|1066089_1067181_-	porin OmpF	Q1MVN1	Enterobacteria_phage	2.2e-99	51.7
WP_000117870.1\|1067787_1069188_-\|tRNA	asparagine--tRNA ligase	A0A167RLM0	Powai_lake_megavirus	4.5e-81	35.1
WP_000762342.1\|1069388_1069850_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA
WP_000301921.1\|1069846_1070080_-	hypothetical protein	NA	NA	NA	NA
WP_000544849.1\|1070166_1071381_+	diaminopropionate ammonia-lyase	NA	NA	NA	NA
WP_000893207.1\|1071625_1073062_+	sodium:alanine symporter family protein	NA	NA	NA	NA
WP_000191399.1\|1073139_1074342_-	nicotinate phosphoribosyltransferase	NA	NA	NA	NA
WP_020899445.1\|1074536_1075829_-\|integrase	site-specific integrase	S4TSP2	Salmonella_phage	4.5e-253	99.8
WP_000065276.1\|1075873_1076122_-	excisionase family protein	S4TND0	Salmonella_phage	4.7e-42	100.0
WP_001237031.1\|1076162_1076402_-	DUF4060 family protein	S4TR31	Salmonella_phage	2.0e-37	100.0
WP_014344386.1\|1076444_1077602_-	recombinase RecT	S4TTE8	Salmonella_phage	7.9e-217	99.7
WP_136614733.1\|1077564_1080765_-	DNA breaking-rejoining protein	S4TNL0	Salmonella_phage	0.0e+00	78.6
WP_023139985.1\|1080891_1081242_-	hypothetical protein	S4TSN6	Salmonella_phage	3.5e-59	94.0
WP_000917559.1\|1081290_1081422_-	hypothetical protein	H6WRX3	Salmonella_phage	1.2e-17	97.7
WP_000981510.1\|1081718_1082153_-	helix-turn-helix domain-containing protein	H6WRX4	Salmonella_phage	2.5e-14	38.2
WP_001555460.1\|1082258_1082486_+	transcriptional regulator	H6WRX5	Salmonella_phage	1.7e-14	45.9
WP_000426364.1\|1082520_1082841_+	hypothetical protein	A0A0M4RU01	Salmonella_phage	1.3e-52	100.0
WP_080072894.1\|1082925_1083909_+	hypothetical protein	H6WRX7	Salmonella_phage	2.1e-162	99.3
WP_000800012.1\|1083911_1084661_+	DNA replication protein DnaC	S4TNF5	Salmonella_phage	4.3e-139	100.0
WP_020899441.1\|1084671_1085019_+	DUF977 family protein	H6WRX9	Salmonella_phage	1.8e-52	90.4
WP_000065109.1\|1085015_1085474_+	ead/Ea22-like family protein	S4TNP2	Salmonella_phage	7.1e-44	77.4
WP_000850457.1\|1085477_1085786_+	hypothetical protein	A0A1P8DTP0	Salmonella_phage	1.8e-30	69.3
WP_000208142.1\|1085789_1086434_+	hypothetical protein	H6WRY2	Salmonella_phage	1.8e-29	40.7
WP_001536080.1\|1086433_1086691_+	hypothetical protein	NA	NA	NA	NA
WP_000493384.1\|1086745_1087723_-	DUF4868 domain-containing protein	NA	NA	NA	NA
WP_022630855.1\|1087734_1088331_-	hypothetical protein	NA	NA	NA	NA
WP_000861985.1\|1088922_1089156_+	DinI-like family protein	A0A0M4REN2	Salmonella_phage	1.2e-31	87.0
WP_000763780.1\|1089265_1089487_+	hypothetical protein	NA	NA	NA	NA
WP_000929788.1\|1089571_1090174_+	DUF1367 family protein	A0A0M4QX23	Salmonella_phage	7.5e-110	99.0
WP_022631099.1\|1090173_1090380_+	hypothetical protein	S4TNP0	Salmonella_phage	1.0e-34	97.1
WP_001096542.1\|1090382_1090994_+	hypothetical protein	A0A0M4RU10	Salmonella_phage	2.7e-91	98.0
WP_151884598.1\|1090990_1091131_+	YlcG family protein	A0A0M5M7B2	Salmonella_phage	9.4e-08	78.9
WP_001097242.1\|1091127_1091817_+	antitermination protein	I6PDF8	Cronobacter_phage	1.1e-59	50.6
WP_001534733.1\|1092011_1092137_+	hypothetical protein	NA	NA	NA	NA
WP_000798705.1\|1092272_1092722_-	hypothetical protein	NA	NA	NA	NA
WP_001141973.1\|1093082_1093769_-\|protease	type III secretion system effector protease GtgA	Q9MBM0	Phage_Gifsy-2	2.1e-132	100.0
WP_077248428.1\|1094044_1094374_+\|holin	phage holin, lambda family	A0A0M3ULK9	Salmonella_phage	2.9e-55	99.1
WP_077907023.1\|1094357_1094810_+	lysozyme	A0A0M4R365	Salmonella_phage	3.9e-79	97.3
WP_024143045.1\|1094827_1095274_+\|lysis	lysis protein	A0A0M4RD57	Salmonella_phage	1.2e-64	90.4
WP_000867564.1\|1095742_1096288_+\|terminase	terminase small subunit	K7P7G0	Enterobacteria_phage	4.5e-53	61.3
WP_020899435.1\|1097408_1097741_+\|tail	phage tail protein	A5LH39	Enterobacteria_phage	4.4e-35	61.5
WP_000725267.1\|1097840_1098338_+	outer membrane beta-barrel protein	A0A1B0VBR9	Salmonella_phage	1.4e-16	36.6
WP_000877926.1\|1098454_1098988_-	superoxide dismutase [Cu-Zn]	Q9MC02	Salmonella_phage	1.8e-46	54.0
WP_001152415.1\|1099077_1099773_+\|tail	phage minor tail protein L	A0A0K2FJ01	Enterobacteria_phage	1.3e-89	66.7
WP_000606351.1\|1099782_1100520_+\|tail	phage tail protein	A0A0P0ZE89	Stx2-converting_phage	1.6e-114	76.1
WP_001576012.1\|1100417_1101122_+\|tail	tail assembly protein	A5LH42	Enterobacteria_phage	2.4e-67	63.1
WP_000178849.1\|1104582_1104825_+	hypothetical protein	NA	NA	NA	NA
WP_031247858.1\|1104878_1107317_+\|tail	tail protein	A0A0K2FIZ6	Escherichia_phage	7.5e-92	63.8
WP_000143167.1\|1107316_1107898_+\|tail	tail fiber assembly protein	A0A0M4RTP2	Salmonella_phage	1.7e-95	89.5
WP_001674638.1\|1108373_1109342_+	SPI-2 type III secretion system effector SseI	Q9MBL9	Phage_Gifsy-2	3.0e-193	99.4
WP_000334547.1\|1109989_1110616_-	SOS response-associated peptidase	A0A2H4J5W2	uncultured_Caudovirales_phage	1.4e-66	63.2
WP_031603423.1\|1110684_1110984_-	hypothetical protein	NA	NA	NA	NA
WP_001525490.1\|1110968_1111655_-	hypothetical protein	NA	NA	NA	NA
WP_000497441.1\|1111925_1112117_-	DinI-like family protein	S4TNM0	Salmonella_phage	6.2e-26	95.2
WP_000193784.1\|1112543_1115156_+	aminopeptidase N	A0A0P0IY26	Acinetobacter_phage	6.3e-20	22.6
WP_000291723.1\|1115363_1116374_+	quinone-dependent dihydroorotate dehydrogenase	NA	NA	NA	NA
WP_001220671.1\|1116539_1117082_+	cell division protein ZapC	NA	NA	NA	NA
WP_000224069.1\|1117078_1118188_-	MOSC domain-containing protein	NA	NA	NA	NA
WP_001086485.1\|1118286_1120395_+	bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL	NA	NA	NA	NA
WP_000053044.1\|1120407_1122315_+	ABC transporter ATP-binding protein	A0A2K9L3Z8	Tupanvirus	2.4e-53	29.8
1120519:1120538	attR	NA	NA	NA	NA
WP_000333152.1\|1122329_1123583_+	membrane integrity-associated transporter subunit PqiA	NA	NA	NA	NA
WP_000433414.1\|1123587_1125228_+	intermembrane transport protein PqiB	NA	NA	NA	NA
WP_033567177.1\|1125224_1125788_+	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA
WP_001537784.1\|1126043_1126211_+	ribosome modulation factor	NA	NA	NA	NA
WP_000227928.1\|1126310_1126829_-	bifunctional 3-hydroxydecanoyl-ACP dehydratase/trans-2-decenoyl-ACP isomerase	NA	NA	NA	NA
WP_000156454.1\|1126897_1128658_-\|protease	Lon protease family protein	NA	NA	NA	NA
WP_000877172.1\|1128843_1129296_+	macrodomain Ter protein MatP	NA	NA	NA	NA
WP_001674965.1\|1129367_1130420_-	porin OmpA	NA	NA	NA	NA
WP_000288732.1\|1130776_1131286_-	cell division inhibitor SulA	NA	NA	NA	NA
WP_001202375.1\|1131502_1132108_+	TfoX/Sxy family DNA transformation protein	NA	NA	NA	NA
WP_000950880.1\|1132094_1134248_-	TIGR01666 family membrane protein	NA	NA	NA	NA
WP_001261222.1\|1134266_1134713_-	YccF domain-containing protein	NA	NA	NA	NA
WP_000420505.1\|1134836_1136891_+	DNA helicase IV	A7KV33	Bacillus_phage	8.5e-20	27.6
WP_000424187.1\|1136926_1137385_-	methylglyoxal synthase	NA	NA	NA	NA
WP_000847719.1\|1137479_1138142_-	DUF2057 family protein	NA	NA	NA	NA
WP_000975203.1\|1138312_1138729_+	CoA-binding protein	NA	NA	NA	NA
WP_000561983.1\|1138773_1139091_-	heat shock protein HspQ	NA	NA	NA	NA
WP_000140480.1\|1139148_1140360_-	23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI	NA	NA	NA	NA
WP_000859419.1\|1140574_1141123_+	YbhB/YbcL family Raf kinase inhibitor-like protein	NA	NA	NA	NA
WP_000548082.1\|1141148_1141928_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_000072884.1\|1141976_1142258_+	acylphosphatase	NA	NA	NA	NA
WP_000904446.1\|1142254_1142584_-	sulfurtransferase TusE	NA	NA	NA	NA
WP_000374050.1\|1142670_1143330_-\|protease	FtsH protease modulator YccA	A0A2H4JFM9	uncultured_Caudovirales_phage	2.3e-43	51.9
WP_000938191.1\|1143950_1144631_-\|protease	type III secretion system effector protease PipA	Q9MBM0	Phage_Gifsy-2	8.3e-81	70.6

DBSCAN-SWA_4

1931343 : 1938152

Salmonella_phage(33.33%)

tail,integrase

attL 1926206:1926228|attR 1935921:1935943

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1926206:1926228	attL	NA	NA	NA	NA
WP_000275418.1\|1931343_1932225_-\|tail	tail assembly protein	A0A0M4RTP2	Salmonella_phage	2.2e-65	76.0
WP_001521334.1\|1932697_1932886_+	hypothetical protein	NA	NA	NA	NA
WP_000789530.1\|1932950_1933118_+	lytic enzyme	NA	NA	NA	NA
WP_001050882.1\|1933374_1933908_-	DUF2514 domain-containing protein	A0A291LBG9	Klebsiella_phage	1.4e-11	48.3
WP_001013467.1\|1933961_1934192_-	hypothetical protein	Q8HA86	Salmonella_phage	6.1e-28	93.7
WP_010989030.1\|1934381_1934876_+	hypothetical protein	A0A0U2I1R6	Escherichia_phage	8.2e-22	68.9
WP_001520095.1\|1934935_1935790_+\|integrase	tyrosine-type recombinase/integrase	A0A2H4IYC8	uncultured_Caudovirales_phage	3.6e-73	50.9
WP_000722368.1\|1936163_1936517_-	YebY family protein	NA	NA	NA	NA
1935921:1935943	attR	NA	NA	NA	NA
WP_000979702.1\|1936533_1937409_-	copper homeostasis membrane protein CopD	NA	NA	NA	NA
WP_000168393.1\|1937409_1937784_-	CopC domain-containing protein YobA	NA	NA	NA	NA
WP_000856224.1\|1937921_1938152_+	DNA polymerase III subunit theta	H9C187	Pectobacterium_phage	2.9e-14	60.3

DBSCAN-SWA_5

2013602 : 2092882

107

Salmonella_phage(75.71%)

transposase,plate,terminase,head,portal,tail,protease,integrase,holin,capsid

attL 2020140:2020155|attR 2094505:2094520

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000502119.1\|2013602_2014061_-\|transposase	IS200/IS605-like element IS200F family transposase	I4AZI8	Saccharomonospora_phage	1.0e-13	31.5
WP_000659236.1\|2014241_2015447_-	lysine-N-methylase	NA	NA	NA	NA
WP_000079806.1\|2015525_2017013_-	flagellin FliC	NA	NA	NA	NA
WP_000146802.1\|2017269_2018673_+	flagellar filament capping protein FliD	NA	NA	NA	NA
WP_000287764.1\|2018687_2019095_+	flagellar export chaperone FliS	NA	NA	NA	NA
WP_000204899.1\|2019094_2019463_+	flagella biosynthesis regulatory protein FliT	NA	NA	NA	NA
WP_022630963.1\|2019534_2021019_+	alpha-amylase	NA	NA	NA	NA
2020140:2020155	attL	NA	NA	NA	NA
WP_000754695.1\|2021058_2021484_-	lipoprotein	NA	NA	NA	NA
WP_001535233.1\|2021669_2022875_+	selenium metabolism membrane protein YedE/FdhT	NA	NA	NA	NA
WP_000790504.1\|2022871_2023105_+	sulfurtransferase-like selenium metabolism protein YedF	NA	NA	NA	NA
WP_000639596.1\|2023369_2023756_+	hypothetical protein	NA	NA	NA	NA
WP_000719036.1\|2023875_2024190_-	flagellar hook-basal body complex protein FliE	NA	NA	NA	NA
WP_001276834.1\|2024406_2026089_+	flagellar basal body M-ring protein FliF	NA	NA	NA	NA
WP_000067735.1\|2026081_2027077_+	flagellar motor switch protein FliG	NA	NA	NA	NA
WP_000064163.1\|2027069_2027777_+	flagellar assembly protein FliH	NA	NA	NA	NA
WP_000213257.1\|2027776_2029147_+	flagellum-specific ATP synthase FliI	NA	NA	NA	NA
WP_000046981.1\|2029168_2029612_+	flagella biosynthesis chaperone FliJ	NA	NA	NA	NA
WP_000631669.1\|2029608_2030826_+	flagellar hook length control protein FliK	NA	NA	NA	NA
WP_000132169.1\|2030930_2031398_+	flagellar basal body-associated protein FliL	NA	NA	NA	NA
WP_000502811.1\|2031402_2032407_+	flagellar motor switch protein FliM	NA	NA	NA	NA
WP_001282115.1\|2032403_2032817_+	flagellar motor switch protein FliN	NA	NA	NA	NA
WP_000978276.1\|2032816_2033194_+	flagellar type III secretion system protein FliO	NA	NA	NA	NA
WP_001253410.1\|2033193_2033931_+	flagellar type III secretion system pore protein FliP	NA	NA	NA	NA
WP_000187355.1\|2033940_2034210_+	flagellar biosynthesis protein FliQ	NA	NA	NA	NA
WP_000616953.1\|2034218_2035013_+	flagellar type III secretion system protein FliR	NA	NA	NA	NA
WP_000103974.1\|2035294_2035918_+	transcriptional regulator RcsA	NA	NA	NA	NA
WP_071524019.1\|2035956_2036205_-	protein DsrB	NA	NA	NA	NA
WP_000844798.1\|2036279_2036507_+	YodD family peroxide/acid resistance protein	NA	NA	NA	NA
WP_000948794.1\|2036816_2037632_+	mannosyl-3-phosphoglycerate phosphatase-related protein	NA	NA	NA	NA
WP_001119821.1\|2037610_2039323_-	cellulose biosynthesis regulator YedQ	A0A127AWB9	Bacillus_phage	1.2e-19	37.4
WP_001178599.1\|2039487_2039733_-	YodC family protein	NA	NA	NA	NA
WP_000929134.1\|2039749_2040661_-	DUF808 domain-containing protein	NA	NA	NA	NA
WP_001212264.1\|2040836_2041757_+	drug/metabolite exporter YedA	NA	NA	NA	NA
WP_000785978.1\|2041745_2042216_-	very short patch repair endonuclease	E5E3X5	Burkholderia_phage	1.2e-30	46.9
WP_001157322.1\|2042196_2043627_-	DNA cytosine methyltransferase	E5E3X6	Burkholderia_phage	1.0e-104	57.4
WP_000377041.1\|2043700_2044396_-	phosphohydrolase	A0A1D6Y7U0	Golden_Marseillevirus	2.8e-07	27.1
WP_000107430.1\|2044487_2044787_-	membrane protein	NA	NA	NA	NA
WP_001080680.1\|2045435_2046632_+	porin OmpS1	Q1MVN1	Enterobacteria_phage	1.8e-110	56.1
WP_024131109.1\|2046892_2047081_-	hypothetical protein	NA	NA	NA	NA
WP_000208509.1\|2047091_2047304_-	cold-shock protein	A0A1W6JNX5	Morganella_phage	3.9e-21	70.0
WP_000457662.1\|2047758_2049027_-	translesion error-prone DNA polymerase V subunit UmuC	I6RSM4	Salmonella_phage	4.2e-227	92.2
WP_000394196.1\|2049029_2049449_-	translesion error-prone DNA polymerase V autoproteolytic subunit	A0A1W6JNS2	Morganella_phage	8.5e-36	60.5
WP_000500831.1\|2049575_2049737_-	hypothetical protein	NA	NA	NA	NA
WP_001093793.1\|2050930_2051143_+	hypothetical protein	A0A192Y5V6	Salmonella_phage	2.7e-30	100.0
WP_000842532.1\|2051139_2051553_+	hypothetical protein	A0A192Y6F0	Salmonella_phage	2.9e-73	100.0
WP_122815478.1\|2051600_2051714_+	hypothetical protein	A0A1C9IHU6	Salmonella_phage	4.3e-11	100.0
WP_000836773.1\|2051788_2052022_+	hypothetical protein	A0A192Y6D5	Salmonella_phage	1.2e-36	100.0
WP_022742744.1\|2052135_2052741_-\|tail	tail fiber assembly protein	A0A192Y8L2	Salmonella_phage	2.7e-107	100.0
WP_000554735.1\|2052710_2054273_-	hypothetical protein	A0A192Y7M1	Salmonella_phage	1.7e-283	98.5
WP_001207832.1\|2054259_2054847_-	DUF2313 domain-containing protein	A0A192Y5V3	Salmonella_phage	2.9e-114	100.0
WP_000785581.1\|2054849_2055929_-\|plate	baseplate J/gp47 family protein	A0A192Y6E4	Salmonella_phage	7.2e-204	99.2
WP_000605055.1\|2055921_2056335_-	hypothetical protein	A0A192Y6D0	Salmonella_phage	1.2e-74	99.3
WP_001273649.1\|2056339_2056873_-\|plate	phage baseplate assembly protein V	Q8HAB9	Salmonella_phage	1.4e-96	100.0
WP_001066632.1\|2056872_2057931_-\|plate	baseplate protein	A0A192Y7L7	Salmonella_phage	3.0e-202	99.7
WP_033567259.1\|2057927_2059268_-	DNA circularization protein	A0A192Y5U9	Salmonella_phage	9.7e-251	99.3
WP_001033736.1\|2059327_2059777_-	hypothetical protein	NA	NA	NA	NA
WP_000785381.1\|2059793_2061719_-\|tail	phage tail tape measure protein	Q8HAC2	Salmonella_phage	0.0e+00	97.3
WP_000588852.1\|2061803_2062130_-\|tail	phage tail assembly protein	Q8HAC3	Salmonella_phage	2.3e-52	99.1
WP_000515953.1\|2062126_2062483_-\|tail	tail protein	A0A192Y8K0	Salmonella_phage	1.3e-61	99.2
WP_033567258.1\|2062482_2063979_-\|tail	tail sheath protein	Q8HAC5	Salmonella_phage	3.0e-277	99.4
WP_065305283.1\|2063968_2064133_-	DUF2635 domain-containing protein	Q8HAC6	Salmonella_phage	7.1e-23	94.4
WP_000779213.1\|2064154_2064712_-	hypothetical protein	A0A192Y5U4	Salmonella_phage	1.1e-96	93.4
WP_151884603.1\|2064708_2065221_-	hypothetical protein	Q8HAC8	Salmonella_phage	6.2e-81	87.1
WP_033567256.1\|2065192_2065597_-\|head	phage head closure protein	A0A192Y6C2	Salmonella_phage	3.7e-52	74.6
WP_000927721.1\|2065593_2065917_-\|head,tail	phage gp6-like head-tail connector protein	U5P072	Shigella_phage	2.4e-54	97.2
WP_033572442.1\|2065919_2066120_-	hypothetical protein	S5FNU1	Shigella_phage	5.8e-27	98.5
WP_033572441.1\|2066169_2067375_-\|capsid	phage major capsid protein	A0A192Y5T6	Salmonella_phage	9.4e-221	98.0
WP_033567207.1\|2067389_2068040_-\|head,protease	HK97 family phage prohead protease	U5P4H2	Shigella_phage	3.1e-117	97.7
WP_000466255.1\|2068017_2069259_-\|portal	phage portal protein	U5P411	Shigella_phage	2.0e-242	99.8
WP_000605609.1\|2069258_2069441_-	hypothetical protein	Q8HAD5	Salmonella_phage	1.0e-25	100.0
WP_033567282.1\|2069452_2071186_-\|terminase	terminase large subunit	Q8HAD6	Salmonella_phage	0.0e+00	99.5
WP_000929191.1\|2071182_2071677_-\|terminase	phage terminase small subunit P27 family	Q8HAD7	Salmonella_phage	4.6e-89	100.0
WP_001135098.1\|2071802_2072153_-	HNH endonuclease	M1FQV2	Enterobacteria_phage	9.8e-62	94.8
WP_001379492.1\|2072203_2072536_-	hypothetical protein	A0A192Y5Y1	Salmonella_phage	2.8e-58	100.0
WP_097053918.1\|2072835_2073114_-	peptidase	Q8SBD8	Shigella_phage	1.3e-24	74.4
WP_001530346.1\|2072998_2073391_-	DUF2570 domain-containing protein	A0A192Y6H8	Salmonella_phage	2.8e-65	100.0
WP_001624504.1\|2073387_2074002_-	glycoside hydrolase family 19 protein	A0A192Y6G4	Salmonella_phage	5.7e-113	100.0
WP_000422366.1\|2074001_2074283_-\|holin	phage holin family protein	K7PKN9	Enterobacterial_phage	9.7e-20	45.2
WP_001283169.1\|2074269_2074656_-	membrane protein	A0A192Y8P2	Salmonella_phage	7.0e-61	100.0
WP_001624505.1\|2074801_2075059_-	hypothetical protein	A0A1C9IHX4	Salmonella_phage	3.1e-41	100.0
WP_020899401.1\|2075209_2075962_-	antitermination protein	A0A192Y5X6	Salmonella_phage	1.8e-145	100.0
WP_070793644.1\|2075975_2076965_-	DUF968 domain-containing protein	A0A1C9IHZ5	Salmonella_phage	2.1e-194	100.0
WP_001061452.1\|2076972_2077833_-	KilA-N domain-containing protein	A0A192Y6F8	Salmonella_phage	1.1e-162	100.0
WP_000779148.1\|2077849_2078239_-	RusA family crossover junction endodeoxyribonuclease	A0A1C9IIA0	Salmonella_phage	4.9e-70	100.0
WP_033567232.1\|2078247_2079123_-	Dam family site-specific DNA-(adenine-N6)-methyltransferase	A0A1C9II58	Salmonella_phage	2.7e-169	99.3
WP_000054228.1\|2079119_2079593_-	PerC family transcriptional regulator	A0A1C9IHW0	Salmonella_phage	4.9e-56	100.0
WP_033567233.1\|2079589_2080564_-	protein phage	A0A1C9IHW0	Salmonella_phage	2.3e-169	100.0
WP_000620702.1\|2080560_2080785_-	hypothetical protein	A0A1C9II64	Salmonella_phage	3.3e-39	100.0
WP_001087404.1\|2080781_2081924_-	hypothetical protein	A0A1C9IHV9	Salmonella_phage	1.5e-212	100.0
WP_000509731.1\|2081920_2082475_-	hypothetical protein	A0A1C9II13	Salmonella_phage	6.9e-102	100.0
WP_001191666.1\|2082503_2082728_-	helix-turn-helix transcriptional regulator	A0A1C9IHV8	Salmonella_phage	1.9e-34	100.0
WP_071530432.1\|2082666_2082852_-	hypothetical protein	NA	NA	NA	NA
WP_001020636.1\|2082825_2083521_+	helix-turn-helix transcriptional regulator	Q8HAA0	Salmonella_phage	3.2e-128	100.0
WP_001067432.1\|2083726_2084065_+	hypothetical protein	A0A1C9IHZ4	Salmonella_phage	7.0e-57	100.0
WP_023891434.1\|2084027_2084252_-	hypothetical protein	A0A1C9IHY8	Salmonella_phage	1.6e-33	100.0
WP_000997191.1\|2084791_2085163_+	hypothetical protein	A0A192Y6G0	Salmonella_phage	2.5e-63	100.0
WP_000080416.1\|2085220_2086048_+	YfdQ family protein	A0A192Y6E5	Salmonella_phage	2.6e-153	100.0
WP_000008351.1\|2086184_2086724_+	hypothetical protein	A0A192Y8M4	Salmonella_phage	2.6e-98	100.0
WP_000215886.1\|2086794_2087328_+	hypothetical protein	A0A192Y7N1	Salmonella_phage	2.5e-101	100.0
WP_000224241.1\|2087329_2087587_+	hypothetical protein	A0A192Y5W0	Salmonella_phage	1.3e-42	100.0
WP_020899398.1\|2087597_2088179_+	hypothetical protein	A0A192Y6F5	Salmonella_phage	4.7e-109	100.0
WP_001061334.1\|2088182_2088752_+	3'-5' exoribonuclease	A0A192Y6E0	Salmonella_phage	7.1e-110	100.0
WP_000414876.1\|2088776_2089019_+	DUF4224 domain-containing protein	Q8HAA9	Salmonella_phage	9.5e-40	100.0
WP_000532847.1\|2089020_2090010_+\|integrase	tyrosine-type recombinase/integrase	A0A192Y7M7	Salmonella_phage	8.6e-196	100.0
WP_000598920.1\|2090301_2091099_+	DgsA anti-repressor MtfA	NA	NA	NA	NA
WP_001738920.1\|2091470_2091761_+	DUF4102 domain-containing protein	H2BDA3	Pseudomonas_phage	3.0e-08	49.1
WP_001219015.1\|2092408_2092882_+	peptidase	A0A0F6TJ61	Escherichia_coli_O157_typing_phage	7.1e-39	77.6
2094505:2094520	attR	NA	NA	NA	NA

DBSCAN-SWA_6

2178877 : 2189383

Enterobacteria_phage(37.5%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000126349.1\|2178877_2180191_-	lipopolysaccharide biosynthesis protein RfbH	H8ZJ36	Ostreococcus_tauri_virus	7.0e-52	35.1
WP_000565905.1\|2180217_2181297_-	CDP-glucose 4,6-dehydratase	A0A222YY99	Synechococcus_phage	6.6e-16	24.1
WP_000648784.1\|2181301_2182075_-	glucose-1-phosphate cytidylyltransferase	NA	NA	NA	NA
WP_000018226.1\|2182071_2183064_-	CDP-6-deoxy-delta-3,4-glucoseen reductase	NA	NA	NA	NA
WP_000973708.1\|2183069_2183621_-	dTDP-4-dehydrorhamnose 3,5-epimerase	I7HJC4	Enterobacteria_phage	2.2e-52	58.0
WP_000857529.1\|2183621_2184500_-	glucose-1-phosphate thymidylyltransferase RfbA	I7I009	Enterobacteria_phage	9.3e-109	65.5
WP_001023662.1\|2184547_2185447_-	dTDP-4-dehydrorhamnose reductase	A0A291LA50	Escherichia_phage	1.4e-30	36.3
WP_000697840.1\|2185446_2186532_-	dTDP-glucose 4,6-dehydratase	I7HTA3	Enterobacteria_phage	1.2e-102	53.9
WP_000981469.1\|2186908_2187802_-	GalU regulator GalF	A0A127AW70	Bacillus_phage	4.8e-44	42.2
WP_001111841.1\|2187979_2189383_-	colanic acid biosynthesis protein WcaM	A0A291LBB9	Klebsiella_phage	3.1e-21	27.1

DBSCAN-SWA_7

2257692 : 2266863

Enterobacteria_phage(66.67%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000195332.1\|2257692_2259726_+\|tRNA	methionine--tRNA ligase	A0A1V0SDF2	Indivirus	1.0e-54	27.6
WP_000703137.1\|2259966_2260425_+	YehR family lipoprotein	Q9EYF5	Enterobacteria_phage	8.4e-53	72.5
WP_001197952.1\|2260596_2261127_+	YehR family lipoprotein	NA	NA	NA	NA
WP_000950413.1\|2261183_2261651_-	DUF1456 family protein	Q9EYF4	Enterobacteria_phage	3.9e-74	90.3
WP_000598637.1\|2261697_2262417_-	two-component system response regulator BtsR	NA	NA	NA	NA
WP_000272845.1\|2262413_2264099_-	sensor histidine kinase	Q9EYF3	Enterobacteria_phage	6.2e-279	91.1
WP_001240418.1\|2264321_2265053_+	HTH-type transcriptional regulator MlrA	Q9EYF2	Enterobacteria_phage	4.5e-101	87.9
WP_001261696.1\|2265112_2265220_+	protein YohO	NA	NA	NA	NA
WP_000824855.1\|2265200_2265932_-	ABC transporter permease	NA	NA	NA	NA
WP_000569166.1\|2265915_2266863_-	ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	1.7e-23	31.2

DBSCAN-SWA_8

2338915 : 2344680

Salmonella_phage(50.0%)

tail

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000806401.1\|2338915_2339419_-	LexA family transcriptional regulator	Q1MVE7	Enterobacteria_phage	9.5e-50	71.3
WP_000884778.1\|2339446_2339737_+	DinI family protein	S4TND2	Salmonella_phage	4.7e-25	83.3
WP_000639473.1\|2340084_2341914_+	acyltransferase	C6ZR20	Salmonella_phage	3.0e-61	29.6
WP_000022213.1\|2341967_2342411_-\|tail	tail fiber assembly protein	A0A0F7LDZ0	Escherichia_phage	1.4e-28	43.9
WP_001215679.1\|2342788_2343316_-\|tail	tail fiber assembly protein	A0A1S6KZZ1	Salmonella_phage	3.1e-11	31.3
WP_058799204.1\|2343318_2344680_-	hypothetical protein	A0A0U2SH60	Escherichia_phage	6.8e-42	74.4

DBSCAN-SWA_9

2684079 : 2784201

108

Salmonella_phage(41.27%)

transposase,terminase,lysis,head,portal,tail,protease,integrase,holin,tRNA,capsid

attL 2710223:2710238|attR 2779290:2779305

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000940032.1\|2684079_2684811_-\|tRNA	tRNA (cytosine(32)/uridine(32)-2'-O)-methyltransferase TrmJ	NA	NA	NA	NA
WP_000553467.1\|2684929_2685733_+	inositol-1-monophosphatase	NA	NA	NA	NA
WP_000174944.1\|2685877_2686756_+	alpha/beta hydrolase	A0A1C9C5K3	Heterosigma_akashiwo_virus	3.5e-15	24.7
WP_000985204.1\|2686937_2687981_+	anaerobic sulfite reductase subunit A	NA	NA	NA	NA
WP_000017587.1\|2687984_2688803_+	anaerobic sulfite reductase subunit B	NA	NA	NA	NA
WP_000020685.1\|2688813_2689827_+	sulfite reductase subunit C	NA	NA	NA	NA
WP_000111027.1\|2689827_2690814_-	nickel/cobalt transporter	NA	NA	NA	NA
WP_000805728.1\|2690804_2691443_-	DUF1007 family protein	NA	NA	NA	NA
WP_000982961.1\|2691568_2692846_+	stationary phase inducible protein CsiE	NA	NA	NA	NA
WP_001173729.1\|2692840_2693980_-	3-phenylpropionate MFS transporter	NA	NA	NA	NA
WP_000919178.1\|2694175_2695429_-	serine hydroxymethyltransferase	A0A240F3L3	Aeromonas_phage	1.3e-100	53.0
WP_000883146.1\|2695753_2696944_+	NO-inducible flavohemoprotein	NA	NA	NA	NA
WP_001187150.1\|2697125_2698670_+	CadC family transcriptional regulator	NA	NA	NA	NA
WP_000100008.1\|2699030_2700362_+	cadaverine/lysine antiporter	NA	NA	NA	NA
WP_001100652.1\|2700444_2702589_+	lysine decarboxylase CadA	NA	NA	NA	NA
WP_000856793.1\|2702644_2704105_+	MFS transporter	A0A0P0IY73	Acinetobacter_phage	1.7e-46	28.8
WP_000717694.1\|2704153_2704492_-	nitrogen regulatory protein P-II	NA	NA	NA	NA
WP_000625591.1\|2704568_2705906_-	two-component system response regulator GlrR	W8CYM9	Bacillus_phage	1.8e-10	29.2
WP_001054236.1\|2705902_2706667_-	two-component system QseEF-associated lipoprotein QseG	NA	NA	NA	NA
WP_001670672.1\|2706668_2708099_-	two component system sensor histidine kinase QseE/GlrK	W8CYF6	Bacillus_phage	2.0e-15	26.1
WP_000970045.1\|2708748_2712636_-	phosphoribosylformylglycinamidine synthase	A9YX36	Burkholderia_phage	1.4e-127	57.6
2710223:2710238	attL	NA	NA	NA	NA
WP_001747289.1\|2712657_2712891_+	hypothetical protein	NA	NA	NA	NA
WP_000734248.1\|2712891_2714436_+	membrane-bound lytic murein transglycosylase MltF	NA	NA	NA	NA
WP_001134566.1\|2714486_2715038_-\|tRNA	tRNA adenosine(34) deaminase TadA	NA	NA	NA	NA
WP_000253558.1\|2715062_2715698_-	phosphatidylglycerophosphatase C	NA	NA	NA	NA
WP_000361663.1\|2715701_2717063_-	PTS sugar transporter subunit IIC	NA	NA	NA	NA
WP_001048530.1\|2717073_2717967_-	N-acetylmuramic acid 6-phosphate etherase	NA	NA	NA	NA
WP_000995703.1\|2718082_2718931_+	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA
WP_000684027.1\|2718969_2719887_-	oxidoreductase	NA	NA	NA	NA
WP_001276365.1\|2719908_2721105_-	OFA family MFS transporter	NA	NA	NA	NA
WP_001022463.1\|2721220_2722147_+	LysR family transcriptional regulator	A0A2P0ZL89	Lactobacillus_phage	3.0e-09	24.4
WP_001196290.1\|2722184_2722445_+	YfhL family 4Fe-4S dicluster ferredoxin	A0A1B1IWY9	uncultured_Mediterranean_phage	1.4e-17	52.3
WP_000986043.1\|2722556_2722937_-	holo-ACP synthase	NA	NA	NA	NA
WP_033567169.1\|2723680_2724409_-	DNA repair protein RecO	NA	NA	NA	NA
WP_000102232.1\|2724420_2725326_-	GTPase Era	NA	NA	NA	NA
WP_001068341.1\|2725322_2726003_-	ribonuclease III	A0A2K9L5P0	Tupanvirus	7.4e-21	31.8
WP_000002559.1\|2726276_2727251_-	signal peptidase I	NA	NA	NA	NA
WP_000790154.1\|2727267_2729067_-	elongation factor 4	E4ZFJ7	Streptococcus_phage	7.2e-23	24.9
WP_010989047.1\|2729471_2730965_+	type III secretion effector GogB	Q9MBM1	Phage_Gifsy-1	3.4e-260	100.0
WP_001542312.1\|2731443_2731581_+	hypothetical protein	NA	NA	NA	NA
WP_015589559.1\|2732293_2732458_-\|transposase	transposase	NA	NA	NA	NA
WP_015701342.1\|2733037_2733103_-	DUF4113 domain-containing protein	NA	NA	NA	NA
WP_001738443.1\|2733165_2733378_-	helix-turn-helix domain-containing protein	S4TTF2	Salmonella_phage	3.8e-08	90.6
WP_010989049.1\|2733484_2733712_+	PagK-like protein	NA	NA	NA	NA
WP_000143154.1\|2733808_2734387_-\|tail	tail fiber assembly protein	A0A0M4RTP2	Salmonella_phage	3.6e-93	88.9
WP_000593433.1\|2734376_2735201_-\|tail	tail protein	A0A0M4QWS3	Salmonella_phage	1.2e-145	92.0
WP_001144691.1\|2735197_2737570_-\|tail	tail protein	A0A0K2FIZ6	Escherichia_phage	1.1e-90	65.6
WP_000178853.1\|2737623_2737866_-	hypothetical protein	NA	NA	NA	NA
WP_000514917.1\|2737904_2741267_-	host specificity protein J	K7PKJ2	Enterobacteria_phage	0.0e+00	79.7
WP_000246126.1\|2741328_2741976_-\|tail	tail assembly protein	A5LH42	Enterobacteria_phage	2.1e-89	77.7
WP_000662739.1\|2741873_2742611_-\|tail	phage tail protein	K7PLW1	Enterobacteria_phage	5.2e-129	85.0
WP_001152689.1\|2742617_2743316_-\|tail	phage minor tail protein L	A0A1B5FP81	Escherichia_phage	5.5e-104	76.3
WP_000447369.1\|2743325_2743655_-\|tail	phage tail protein	A5LH39	Enterobacteria_phage	1.3e-42	70.4
WP_000372065.1\|2743657_2746753_-\|tail	phage tail tape measure protein	A0A291AWX1	Escherichia_phage	1.7e-274	62.3
WP_010989052.1\|2746724_2747063_-\|tail	phage tail assembly protein T	A5LH37	Enterobacteria_phage	1.3e-31	62.4
WP_000479607.1\|2747059_2747455_-\|tail	phage minor tail protein G	A5LH36	Enterobacteria_phage	2.3e-30	56.5
WP_077248250.1\|2747505_2748252_-\|tail	phage tail protein	A0A291AWU6	Escherichia_phage	1.9e-99	76.5
WP_000033885.1\|2748259_2748661_-\|tail	tail protein	Q9G0F3	Phage_Gifsy-1	8.1e-52	100.0
WP_000817263.1\|2748769_2749900_+\|transposase	IS200/IS605 family element transposase accessory protein TnpB	Q9G0F2	Phage_Gifsy-1	9.2e-218	100.0
WP_000677089.1\|2749948_2750527_-\|tail	phage tail protein	A5LH33	Enterobacteria_phage	3.7e-82	80.2
WP_000083294.1\|2750554_2750938_-\|tail	tail attachment protein	A0A0K2FJB7	Enterobacteria_phage	9.2e-29	55.6
WP_000201486.1\|2750948_2751308_-	DNA packaging protein	NA	NA	NA	NA
WP_000522566.1\|2751365_2752394_-\|capsid	major capsid protein	C6ZCY2	Enterobacteria_phage	1.7e-114	61.1
WP_000011260.1\|2752448_2752796_-\|head	head decoration protein	A0A2R9YJN3	Escherichia_phage	9.2e-20	52.7
WP_001189503.1\|2752808_2754305_-	S49 family peptidase	A0A0K2FI53	Enterobacteria_phage	8.1e-97	52.2
WP_000831821.1\|2754294_2755875_-\|portal	phage portal protein	K7P6U7	Enterobacteria_phage	9.6e-189	62.8
WP_000201415.1\|2755871_2756075_-\|head,tail	head-tail joining protein	K7PM10	Enterobacteria_phage	1.9e-17	73.8
WP_000623091.1\|2756058_2757990_-\|terminase	phage terminase large subunit family protein	A0A0K2FJ14	Enterobacteria_phage	6.3e-259	65.7
WP_001102153.1\|2757961_2758507_-\|terminase	terminase small subunit	A0A0U2S671	Escherichia_phage	1.5e-56	80.6
WP_000669690.1\|2758793_2759195_+	hypothetical protein	NA	NA	NA	NA
WP_001533543.1\|2759430_2759883_-\|lysis	lysis protein	A0A0M4RD57	Salmonella_phage	2.9e-66	92.7
WP_151884604.1\|2759900_2760353_-	glycoside hydrolase family protein	A0A0M4R365	Salmonella_phage	5.1e-79	97.3
WP_001574216.1\|2760336_2760666_-\|holin	phage holin, lambda family	A0A0M3ULK9	Salmonella_phage	5.8e-56	100.0
WP_001110783.1\|2760941_2761628_+\|protease	type III secretion system effector protease GogA	Q9MBM2	Phage_Gifsy-1	9.4e-133	100.0
WP_000657897.1\|2761842_2762031_-	hypothetical protein	NA	NA	NA	NA
WP_000211410.1\|2762537_2763101_-	ORF6N domain-containing protein	A0A0P0ZC44	Stx2-converting_phage	7.6e-56	92.2
WP_072095218.1\|2763191_2763377_-	hypothetical protein	NA	NA	NA	NA
WP_001097241.1\|2763373_2764051_-	antitermination protein	I6PDF8	Cronobacter_phage	7.7e-63	54.0
WP_000801757.1\|2764047_2764188_-	YlcG family protein	A0A0M5M7B2	Salmonella_phage	7.2e-08	78.9
WP_001096550.1\|2764184_2764796_-	recombination protein NinG	A0A0M4RU10	Salmonella_phage	1.2e-91	99.0
WP_001241017.1\|2764798_2765005_-	hypothetical protein	S4TNP0	Salmonella_phage	1.7e-34	97.1
WP_000929803.1\|2765004_2765607_-	DUF1367 family protein	S4TTI0	Salmonella_phage	1.1e-108	98.5
WP_001574100.1\|2765646_2765952_-	hypothetical protein	H6WRY6	Salmonella_phage	9.8e-42	100.0
WP_001217666.1\|2765941_2766181_-	DinI family protein	H6WRY5	Salmonella_phage	1.1e-37	98.7
WP_071530012.1\|2766372_2766654_-	hypothetical protein	A0A0K2FIU9	Enterobacteria_phage	1.4e-47	92.5
WP_000445792.1\|2767045_2767519_-	class I SAM-dependent methyltransferase	H9C170	Pectobacterium_phage	1.6e-67	80.1
WP_000065105.1\|2767518_2768043_-	ead/Ea22-like family protein	A0A220NQV2	Salmonella_phage	1.8e-91	99.4
WP_020899441.1\|2768039_2768387_-	DUF977 family protein	H6WRX9	Salmonella_phage	1.8e-52	90.4
WP_000800012.1\|2768397_2769147_-	DNA replication protein DnaC	S4TNF5	Salmonella_phage	4.3e-139	100.0
WP_000062941.1\|2769149_2770133_-	hypothetical protein	H6WRX7	Salmonella_phage	1.9e-163	100.0
WP_001574095.1\|2770217_2770592_-	hypothetical protein	S4TTD7	Salmonella_phage	3.9e-64	99.2
WP_000869364.1\|2770557_2770794_-	Cro/Cl family transcriptional regulator	H6WRX5	Salmonella_phage	1.8e-38	100.0
WP_001009037.1\|2770923_2771328_+	transcriptional regulator	H6WRX4	Salmonella_phage	1.6e-71	99.3
WP_000917562.1\|2771726_2771885_+	hypothetical protein	H6WRX3	Salmonella_phage	9.0e-23	98.1
WP_001539619.1\|2771906_2772257_+	hypothetical protein	S4TSN6	Salmonella_phage	1.1e-60	97.4
WP_151257998.1\|2772383_2775311_+	exodeoxyribonuclease	S4TNL0	Salmonella_phage	0.0e+00	99.5
WP_077248255.1\|2775273_2776431_+	recombinase RecT	S4TTE8	Salmonella_phage	3.9e-216	99.5
WP_001237031.1\|2776473_2776713_+	DUF4060 family protein	S4TR31	Salmonella_phage	2.0e-37	100.0
WP_001670787.1\|2776753_2777038_+	excisionase Xis	H6WRW8	Salmonella_phage	3.1e-42	86.2
WP_001007939.1\|2777015_2778245_-\|integrase	site-specific integrase	H6WRW7	Salmonella_phage	2.9e-233	94.4
WP_000589087.1\|2778742_2779222_-	SoxR-reducing system protein RseC	NA	NA	NA	NA
WP_000812017.1\|2779218_2780175_-	sigma-E factor regulatory protein RseB	NA	NA	NA	NA
2779290:2779305	attR	NA	NA	NA	NA
WP_001168374.1\|2780174_2780825_-	anti-sigma-E factor RseA	NA	NA	NA	NA
WP_000003307.1\|2780856_2781432_-	RNA polymerase sigma factor RpoE	NA	NA	NA	NA
WP_014344135.1\|2781428_2781593_-	rpoE leader peptide RseD	NA	NA	NA	NA
WP_001521719.1\|2781592_2781772_-	hypothetical protein	NA	NA	NA	NA
WP_000989177.1\|2781856_2783479_+	L-aspartate oxidase	NA	NA	NA	NA
WP_000083343.1\|2783463_2784201_-\|tRNA	tRNA(1)(Val) (adenine(37)-N(6))-methyltransferase TrmN	NA	NA	NA	NA

DBSCAN-SWA_10

2788841 : 2905402

113

Enterobacteria_phage(59.32%)

transposase,plate,terminase,head,portal,tail,integrase,holin,tRNA,capsid

attL 2885776:2885835|attR 2911005:2911825

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000997368.1\|2788841_2789879_-\|tRNA	tRNA/rRNA methyltransferase	NA	NA	NA	NA
WP_001098732.1\|2790082_2790502_+	thioredoxin TrxC	A0A0K2FIM3	Achromobacter_phage	1.2e-16	40.6
WP_000183639.1\|2790574_2791255_+	DTW domain-containing protein	NA	NA	NA	NA
WP_000082639.1\|2791308_2793969_+	protein lysine acetyltransferase	NA	NA	NA	NA
WP_000949286.1\|2794083_2795439_+	CDP-diacylglycerol--serine O-phosphatidyltransferase	NA	NA	NA	NA
WP_001264473.1\|2795483_2795807_+	YfiM family lipoprotein	NA	NA	NA	NA
WP_000807809.1\|2795803_2797105_-	MFS transporter	Q6JIH2	Burkholderia_virus	6.9e-44	30.4
WP_000985653.1\|2797208_2797664_-	DUF4385 domain-containing protein	E3SMI8	Prochlorococcus_phage	3.0e-34	50.0
WP_001235094.1\|2803544_2806118_-	ATP-dependent chaperone ClpB	H6X3M6	Enterobacteria_phage	9.0e-128	35.6
WP_000992639.1\|2806247_2806979_-	polyphenol oxidase	NA	NA	NA	NA
WP_000079130.1\|2806975_2807956_-	23S rRNA pseudouridine(1911/1915/1917) synthase RluD	NA	NA	NA	NA
WP_000197660.1\|2808087_2808825_+	outer membrane protein assembly factor BamD	NA	NA	NA	NA
WP_000178449.1\|2809096_2809435_+	ribosome-associated translation inhibitor RaiA	NA	NA	NA	NA
WP_000215756.1\|2809585_2810392_-	site-specific DNA-methyltransferase	Q775B4	Bordetella_phage	1.5e-65	53.2
WP_072032588.1\|2810388_2810595_-	Com family DNA-binding transcriptional regulator	NA	NA	NA	NA
WP_001519189.1\|2810725_2811022_-	zinc-ribbon domain and TM2 domain-containing protein	M4ZS56	Bacillus_phage	9.0e-16	67.2
WP_000078916.1\|2811157_2811298_-	Hok/Gef family protein	A0A0A7NPZ4	Enterobacteria_phage	1.5e-18	97.8
WP_000488105.1\|2811488_2811749_-	ogr/Delta-like zinc finger family protein	NA	NA	NA	NA
WP_032419529.1\|2811791_2812901_-	phage late control D family protein	A0A0A7NQ97	Enterobacteria_phage	3.1e-194	94.3
WP_000005390.1\|2813058_2814243_+\|tail	phage tail sheath family protein	A0A0A7NV69	Enterobacteria_phage	1.5e-226	99.7
WP_000290447.1\|2814242_2814755_+\|tail	phage major tail tube protein	A0A0A7NPV8	Enterobacteria_phage	9.2e-93	99.4
WP_000665308.1\|2814809_2815175_+\|tail	tail protein	A0A0A7NPZ0	Enterobacteria_phage	3.8e-56	97.5
WP_000763327.1\|2815210_2815339_+\|tail	GpE family phage tail protein	A0A0A7NQ96	Enterobacteria_phage	3.0e-16	97.6
WP_032419528.1\|2815325_2818133_+\|tail	phage tail tape measure protein	A0A0A7NRZ9	Enterobacteria_phage	0.0e+00	93.8
WP_000979954.1\|2818145_2818634_+\|tail	phage tail protein	A0A0A7NV65	Enterobacteria_phage	1.6e-86	100.0
WP_000905084.1\|2818660_2819260_-	recombinase family protein	A0A0A7NPV4	Enterobacteria_phage	6.8e-87	86.9
WP_024144069.1\|2819479_2819968_+	hypothetical protein	A0A1S6KZZ0	Salmonella_phage	9.8e-68	81.4
WP_010835343.1\|2819937_2820555_+\|tail	tail fiber assembly protein	A0A1S6KZY8	Salmonella_phage	5.3e-95	83.6
WP_022631136.1\|2820559_2821093_-\|tail	tail fiber assembly protein	A0A1S6KZZ1	Salmonella_phage	5.7e-77	80.3
WP_151884605.1\|2821095_2822964_-\|tail	phage tail protein	Q7Y4D4	Escherichia_virus	8.4e-160	55.3
WP_106668242.1\|2822960_2823569_-\|tail	phage tail protein I	A0A0F7LA36	Escherichia_phage	1.2e-86	74.9
WP_001574602.1\|2823561_2824458_-\|plate	baseplate J-like family protein	A0A0A7NPY5	Enterobacteria_phage	2.1e-156	99.0
WP_000213447.1\|2824461_2824812_-\|plate	baseplate assembly protein	A0A0A7NQ90	Enterobacteria_phage	9.2e-60	100.0
WP_097477625.1\|2824808_2825390_-\|plate	phage baseplate assembly protein V	A0A0A7NRZ3	Enterobacteria_phage	6.8e-100	95.3
WP_000356339.1\|2825386_2826022_-	phage virion morphogenesis protein	A0A0A7NV60	Enterobacteria_phage	1.1e-114	100.0
WP_000920594.1\|2826014_2826482_-\|tail	phage tail protein	A0A0A7NPU6	Enterobacteria_phage	2.6e-86	100.0
WP_024132949.1\|2826468_2826648_-	hypothetical protein	NA	NA	NA	NA
WP_151884606.1\|2826619_2827027_-	DUF2570 domain-containing protein	A0A0A7NPY2	Enterobacteria_phage	3.2e-64	95.6
WP_000072334.1\|2827023_2827416_-	M15 family metallopeptidase	A0A0A7NQ86	Enterobacteria_phage	6.4e-70	99.2
WP_000104350.1\|2827412_2827736_-\|holin	holin	A0A0A7NRY9	Enterobacteria_phage	1.6e-50	99.1
WP_000864913.1\|2827738_2827939_-\|tail	tail protein	A0A0A7NV57	Enterobacteria_phage	2.3e-31	98.5
WP_000063082.1\|2827938_2828433_-\|head	head completion/stabilization protein	A0A0A7NPU2	Enterobacteria_phage	2.7e-89	99.4
WP_151884607.1\|2828535_2829336_-\|terminase	terminase	A0A0A7NPX9	Enterobacteria_phage	3.2e-124	88.0
WP_001055125.1\|2829381_2830434_-\|capsid	phage major capsid protein, P2 family	A0A0A7NQ82	Enterobacteria_phage	2.7e-187	93.7
WP_151884608.1\|2830457_2831294_-\|capsid	phage capsid protein	A0A0A7NRY7	Enterobacteria_phage	9.6e-148	98.2
WP_151884609.1\|2831448_2833200_+	oxidoreductase	A0A0A7NV54	Enterobacteria_phage	0.0e+00	97.8
WP_000087812.1\|2833199_2834246_+\|portal	phage portal protein	A0A0A7NPT9	Enterobacteria_phage	1.5e-206	100.0
WP_001140702.1\|2834739_2836965_-	S8 family peptidase	NA	NA	NA	NA
WP_000502620.1\|2836988_2838110_-	AAA family ATPase	R4TQL5	Phaeocystis_globosa_virus	3.7e-17	29.5
WP_151884610.1\|2838290_2841074_-	replication endonuclease	A0A0A7NQ77	Enterobacteria_phage	0.0e+00	86.6
WP_000564227.1\|2841070_2841460_-	hypothetical protein	NA	NA	NA	NA
WP_124829034.1\|2841456_2842074_-	hypothetical protein	S5MQL6	Escherichia_phage	2.7e-06	38.3
WP_032419531.1\|2842085_2842385_-	hypothetical protein	A0A0A7NRX6	Enterobacteria_phage	9.6e-42	90.8
WP_000153674.1\|2842381_2842627_-	winged helix-turn-helix domain-containing protein	A0A0A7NV47	Enterobacteria_phage	3.3e-40	98.8
WP_024232567.1\|2842623_2842827_-	hypothetical protein	A0A0A7NPS8	Enterobacteria_phage	1.0e-26	88.1
WP_000021661.1\|2842913_2843027_-	hypothetical protein	A0A0A7NPW7	Enterobacteria_phage	1.6e-10	97.3
WP_000514277.1\|2843023_2843266_-	DUF4754 domain-containing protein	A0A0A7NQ71	Enterobacteria_phage	2.3e-38	100.0
WP_024232568.1\|2843277_2843565_-	hypothetical protein	A0A0A7NRX5	Enterobacteria_phage	1.0e-32	76.8
WP_024232569.1\|2843575_2843917_-	DUF4761 family protein	A0A0A7NV42	Enterobacteria_phage	5.1e-55	92.2
WP_001001394.1\|2843935_2844262_-	hypothetical protein	NA	NA	NA	NA
WP_032152547.1\|2844357_2844660_+	helix-turn-helix transcriptional regulator	Q1JS63	Enterobacteria_phage	2.3e-19	52.0
WP_024232571.1\|2844726_2845716_+\|integrase	tyrosine-type recombinase/integrase	Q83VS6	Escherichia_phage	3.4e-99	53.5
WP_010989056.1\|2845883_2845931_+	hypothetical protein	NA	NA	NA	NA
WP_000200080.1\|2846030_2847191_+	bifunctional chorismate mutase/prephenate dehydratase	NA	NA	NA	NA
WP_000210995.1\|2847151_2848060_-	SMP-30/gluconolactonase/LRE family protein	NA	NA	NA	NA
WP_000225191.1\|2848117_2849239_-	bifunctional chorismate mutase/prephenate dehydrogenase	NA	NA	NA	NA
WP_001168062.1\|2849248_2850319_-	3-deoxy-7-phosphoheptulonate synthase AroF	A0A0F6R6T6	Escherichia_coli_O157_typing_phage	2.4e-90	51.8
WP_001212379.1\|2850758_2851277_+	YfiR family protein	NA	NA	NA	NA
WP_001030985.1\|2851269_2852490_+	diguanylate cyclase DgcN	A0A2K8I9Y5	Pseudomonas_phage	5.8e-08	36.2
WP_000065257.1\|2852646_2852994_-	50S ribosomal protein L19	NA	NA	NA	NA
WP_000469804.1\|2853034_2853802_-\|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	NA	NA	NA	NA
WP_000043266.1\|2853846_2854395_-	ribosome maturation factor RimM	NA	NA	NA	NA
WP_000256453.1\|2854413_2854662_-	30S ribosomal protein S16	NA	NA	NA	NA
WP_000460052.1\|2854975_2856337_-	signal recognition particle protein	NA	NA	NA	NA
WP_001537507.1\|2856502_2857294_+	inner membrane protein YpjD	NA	NA	NA	NA
WP_127172650.1\|2857313_2858600_+	HlyC/CorC family transporter	NA	NA	NA	NA
WP_001287923.1\|2858720_2859326_+	hypothetical protein	NA	NA	NA	NA
WP_001518875.1\|2859360_2859951_-	nucleotide exchange factor GrpE	NA	NA	NA	NA
WP_001059155.1\|2860073_2860952_+	NAD(+) kinase	NA	NA	NA	NA
WP_000880965.1\|2861037_2862699_+	DNA repair protein RecN	NA	NA	NA	NA
WP_001203445.1\|2862847_2863186_+	outer membrane protein assembly factor BamE	NA	NA	NA	NA
WP_001112990.1\|2863351_2863642_-	RnfH family protein	NA	NA	NA	NA
WP_000242603.1\|2863631_2864108_-	type II toxin-antitoxin system RatA family toxin	NA	NA	NA	NA
WP_001518569.1\|2864257_2864740_+	SsrA-binding protein SmpB	W5RAM5	Staphylococcus_phage	5.2e-29	47.4
WP_001237668.1\|2865353_2876828_+	biofilm-associated protein BapA	NA	NA	NA	NA
WP_000533858.1\|2876892_2878302_+	TolC family outer membrane protein	NA	NA	NA	NA
WP_000196159.1\|2878298_2880479_+	type I secretion system permease/ATPase	F2Y302	Organic_Lake_phycodnavirus	1.3e-18	34.0
WP_010989057.1\|2880486_2881650_+	HlyD family type I secretion periplasmic adaptor subunit	NA	NA	NA	NA
WP_001067855.1\|2883102_2883807_-\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
WP_000027057.1\|2884391_2885252_+	class A broad-spectrum beta-lactamase TEM-1	Q1MVP3	Enterobacteria_phage	4.6e-161	100.0
WP_023150081.1\|2885401_2885803_+\|transposase	IS91 family transposase	NA	NA	NA	NA
2885776:2885835	attL	NA	NA	NA	NA
WP_001067855.1\|2885839_2886544_+\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
WP_000480968.1\|2886604_2887441_-	aminoglycoside O-phosphotransferase APH(6)-Id	NA	NA	NA	NA
WP_001082319.1\|2887440_2888244_-	aminoglycoside O-phosphotransferase APH(3'')-Ib	Q75ZG1	Hepacivirus	4.9e-24	34.3
WP_001043265.1\|2888304_2889120_-	sulfonamide-resistant dihydropteroate synthase Sul2	NA	NA	NA	NA
WP_000240536.1\|2889427_2890279_-	replication protein	NA	NA	NA	NA
WP_001067855.1\|2890853_2891558_-\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
WP_000935452.1\|2891604_2892909_-\|integrase,transposase	DDE-type integrase/transposase/recombinase	NA	NA	NA	NA
WP_000204520.1\|2892947_2893655_-	EAL domain-containing protein	NA	NA	NA	NA
WP_000993386.1\|2893651_2893888_-	broad-spectrum mercury transporter MerE	NA	NA	NA	NA
WP_001277456.1\|2893884_2894247_-	mercury resistance co-regulator MerD	NA	NA	NA	NA
WP_000105636.1\|2894264_2895959_-	mercury(II) reductase	A0A2K5B2C5	Erysipelothrix_phage	8.8e-39	27.6
WP_001340589.1\|2896010_2896433_-	organomercurial transporter MerC	NA	NA	NA	NA
WP_000732293.1\|2896468_2896744_-	mercury resistance system periplasmic binding protein MerP	NA	NA	NA	NA
WP_001294663.1\|2896757_2897108_-	mercuric transport protein MerT	NA	NA	NA	NA
WP_000429836.1\|2897179_2897614_+	Hg(II)-responsive transcriptional regulator	NA	NA	NA	NA
WP_001089068.1\|2898897_2900103_-	tetracycline efflux MFS transporter Tet(B)	A0A2H4UVM2	Bodo_saltans_virus	3.0e-09	24.4
WP_001322387.1\|2900181_2900808_+	TetR family transcriptional regulator	NA	NA	NA	NA
WP_001447544.1\|2900785_2901472_-	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_000460651.1\|2901479_2901866_-	hypothetical protein	NA	NA	NA	NA
WP_000562370.1\|2901858_2902179_-	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA
WP_000599533.1\|2902622_2903828_+	sodium/glutamate symporter	NA	NA	NA	NA
WP_001352368.1\|2904193_2905402_-\|transposase	IS4-like element ISVsa5 family transposase	A0A0F7LAS3	uncultured_marine_virus	1.8e-235	100.0
2911005:2911825	attR	NA	NA	NA	NA

DBSCAN-SWA_11

3366809 : 3408339

Cronobacter_phage(68.42%)

terminase,head,portal,tail,integrase,holin,tRNA,capsid

attL 3362146:3362161|attR 3405561:3405576

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
3362146:3362161	attL	NA	NA	NA	NA
WP_001264394.1\|3366809_3367823_-\|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	A0A0R6PI74	Moraxella_phage	2.8e-109	59.5
WP_001144069.1\|3368050_3368266_+	30S ribosomal protein S21	NA	NA	NA	NA
WP_000918865.1\|3368501_3370247_+	DNA primase	A0A0K1LMQ9	Caulobacter_phage	2.1e-72	38.4
WP_001519776.1\|3370396_3372244_+	RNA polymerase sigma factor RpoD	A0A2I7SAT0	Vibrio_phage	8.4e-35	33.7
WP_000237776.1\|3372367_3372874_-	G/U mismatch-specific DNA glycosylase	NA	NA	NA	NA
WP_000340945.1\|3373197_3373500_-	hypothetical protein	NA	NA	NA	NA
WP_000746531.1\|3373931_3374117_-	hypothetical protein	NA	NA	NA	NA
WP_001680744.1\|3374868_3376569_-	hypothetical protein	F1BUJ7	Cronobacter_phage	9.9e-224	81.4
WP_000200789.1\|3376571_3377117_-	hypothetical protein	F1BUJ9	Cronobacter_phage	3.2e-59	72.0
WP_000267957.1\|3377088_3377814_-	hypothetical protein	F1BUK1	Cronobacter_phage	3.7e-63	53.5
WP_000861353.1\|3377803_3378358_-\|tail	tail fiber assembly protein	S4TUB9	Salmonella_phage	2.7e-90	89.0
WP_000084307.1\|3378370_3380605_-\|tail	tail protein	Q8HAB4	Salmonella_phage	7.2e-182	73.7
WP_001001828.1\|3380614_3381202_-	hypothetical protein	F1BUK5	Cronobacter_phage	3.8e-90	82.6
WP_000136921.1\|3381194_3382379_-	hypothetical protein	F1BUK6	Cronobacter_phage	6.7e-179	78.4
WP_001002797.1\|3382375_3382705_-	DUF2590 family protein	F1BUK8	Cronobacter_phage	3.8e-39	72.4
WP_000811094.1\|3382701_3384672_-\|tail	phage tail tape measure protein	F1BUK9	Cronobacter_phage	3.2e-274	70.8
WP_000411339.1\|3384859_3385117_-	hypothetical protein	A5X9I7	Aeromonas_virus	3.6e-21	63.4
WP_001670161.1\|3385103_3385292_-	hypothetical protein	F1BUL1	Cronobacter_phage	1.5e-21	77.4
WP_000376373.1\|3385263_3385596_-	hypothetical protein	F1BUL2	Cronobacter_phage	1.5e-35	70.9
WP_000175560.1\|3385595_3385937_-	M15 family metallopeptidase	F1BUL3	Cronobacter_phage	2.2e-50	91.1
WP_001154425.1\|3385933_3386227_-\|holin	holin	C7BGD7	Burkholderia_phage	1.3e-14	46.2
WP_000166743.1\|3386236_3386692_-	DUF2597 family protein	F1BUL4	Cronobacter_phage	1.5e-57	72.2
WP_000220203.1\|3386688_3387816_-	DUF2586 domain-containing protein	F1BUL5	Cronobacter_phage	1.9e-175	83.7
WP_000560080.1\|3387812_3388520_-	hypothetical protein	F1BUL6	Cronobacter_phage	1.3e-100	76.1
WP_000084218.1\|3388516_3389023_-\|tail	phage tail protein	F1BUL7	Cronobacter_phage	1.2e-63	69.1
WP_000447487.1\|3389019_3389508_-\|head	head completion/stabilization protein	F1BUL8	Cronobacter_phage	2.3e-64	82.7
WP_001218537.1\|3389568_3390270_-\|terminase	terminase	F1BUM0	Cronobacter_phage	9.4e-88	66.8
WP_000550495.1\|3390273_3391296_-\|capsid	phage major capsid protein, P2 family	F1BUM2	Cronobacter_phage	3.9e-159	81.5
WP_000018800.1\|3391357_3392161_-\|capsid	phage capsid scaffolding protein	F1BUM4	Cronobacter_phage	2.0e-78	56.0
WP_001151939.1\|3392321_3394097_+	hypothetical protein	F1BUM5	Cronobacter_phage	9.8e-291	83.1
WP_000038213.1\|3394093_3395155_+\|portal	phage portal protein	F1BUM7	Cronobacter_phage	6.7e-162	76.8
WP_001552031.1\|3395151_3395475_+	ogr/Delta-like zinc finger family protein	F1BUM8	Cronobacter_phage	8.0e-50	92.3
WP_000353141.1\|3395448_3395655_-	hypothetical protein	NA	NA	NA	NA
WP_000170874.1\|3395774_3397796_-	replication endonuclease	F1BUM9	Cronobacter_phage	7.9e-297	74.5
WP_000279404.1\|3397792_3398653_-	DNA adenine methylase	F1BUN1	Cronobacter_phage	1.1e-130	82.0
WP_000551169.1\|3398643_3398877_-	DUF2732 family protein	NA	NA	NA	NA
WP_000022786.1\|3398944_3399346_-	hypothetical protein	F1BUN2	Cronobacter_phage	1.4e-48	66.9
WP_000996837.1\|3399345_3399771_-	hypothetical protein	F1BUN5	Cronobacter_phage	2.2e-23	49.6
WP_000643375.1\|3399760_3399988_-	hypothetical protein	NA	NA	NA	NA
WP_000460878.1\|3399997_3400501_-	hypothetical protein	F1BUN6	Cronobacter_phage	3.5e-60	72.5
WP_001247711.1\|3400531_3400753_-	hypothetical protein	NA	NA	NA	NA
WP_000514631.1\|3400896_3401478_+	phage repressor protein	A0A218M4J1	Erwinia_phage	1.2e-27	37.2
WP_000568372.1\|3401494_3402061_+	hypothetical protein	Q4ZA70	Staphylococcus_virus	1.3e-18	32.8
WP_001145219.1\|3402064_3403102_+\|integrase	tyrosine-type recombinase/integrase	F1BUS9	Erwinia_phage	1.5e-121	63.9
WP_000627044.1\|3403091_3404873_+	ATP-binding protein	X2KLG0	Campylobacter_phage	6.4e-08	23.2
WP_000213760.1\|3405130_3405898_-	siderophore-interacting protein	NA	NA	NA	NA
3405561:3405576	attR	NA	NA	NA	NA
WP_000983441.1\|3406129_3406777_+	PadR family transcriptional regulator	NA	NA	NA	NA
WP_000478472.1\|3406773_3408339_-	HAMP domain-containing protein	A0A2H4J162	uncultured_Caudovirales_phage	1.0e-12	33.9

DBSCAN-SWA_12

4443312 : 4463732

Burkholderia_phage(45.0%)

tail,plate

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000587738.1\|4443312_4444041_-	hypothetical protein	A0A077SLK3	Escherichia_phage	5.6e-35	37.3
WP_010989092.1\|4444237_4444528_-	membrane protein	NA	NA	NA	NA
WP_000084331.1\|4444776_4445232_-	hypothetical protein	NA	NA	NA	NA
WP_001526208.1\|4445228_4445834_-	DUF4376 domain-containing protein	NA	NA	NA	NA
WP_000368196.1\|4445838_4447584_-\|tail	tail protein	A0A0M3ULF6	Salmonella_phage	3.2e-52	52.2
WP_000359500.1\|4447586_4448219_-\|tail	phage tail protein I	Q6QI98	Burkholderia_phage	6.6e-24	56.4
WP_000951736.1\|4448211_4449327_-\|plate	baseplate protein	Q6QI99	Burkholderia_phage	1.8e-101	52.2
WP_001093501.1\|4449317_4449677_-\|plate	baseplate protein	Q6QIA0	Burkholderia_phage	2.8e-35	64.2
WP_001095011.1\|4449840_4451388_-	membrane protein	B9UDL6	Salmonella_phage	1.9e-48	29.9
WP_000703632.1\|4451387_4452317_-	glycosyltransferase family 2 protein	S5FKN0	Shigella_phage	8.8e-150	83.8
WP_000593182.1\|4452313_4452676_-	GtrA family protein	I1TED9	Salmonella_phage	1.2e-43	70.8
WP_000679398.1\|4453003_4453726_-\|plate	phage baseplate assembly protein V	A0A067ZIM2	Vibrio_phage	3.3e-11	41.0
WP_000818154.1\|4453735_4454779_-	phage late control D family protein	Q6QIA2	Burkholderia_phage	2.5e-76	45.1
WP_001269716.1\|4454766_4454976_-	membrane protein	A4JWL2	Burkholderia_virus	9.8e-17	60.3
WP_000271423.1\|4454975_4455929_-	methyl-accepting chemotaxis protein	A4JWL1	Burkholderia_virus	2.3e-36	50.8
WP_001262499.1\|4455928_4458283_-\|tail	phage tail tape measure protein	A4JWL0	Burkholderia_virus	9.0e-66	30.6
WP_001185654.1\|4458379_4458508_-\|tail	GpE family phage tail protein	NA	NA	NA	NA
WP_001003642.1\|4458467_4458785_-\|tail	phage tail assembly protein	NA	NA	NA	NA
WP_000907494.1\|4458836_4459361_-\|tail	phage major tail tube protein	Q6QIA9	Burkholderia_phage	2.8e-68	69.5
WP_000729852.1\|4459360_4460788_-\|tail	phage tail sheath family protein	A4JWK5	Burkholderia_virus	1.1e-194	70.9
WP_000875314.1\|4460777_4460975_-	hypothetical protein	Q6QIB1	Burkholderia_phage	8.6e-07	52.9
WP_000449433.1\|4460971_4461427_-	hypothetical protein	NA	NA	NA	NA
WP_000777266.1\|4461586_4461901_-	membrane protein	Q6QIC4	Burkholderia_phage	6.4e-20	49.1
WP_001270441.1\|4461913_4462519_-	transglycosylase SLT domain-containing protein	Q5ZQZ1	Pseudomonas_phage	2.5e-60	59.9
WP_001226442.1\|4462521_4462809_-	membrane protein	Q6QIC8	Burkholderia_phage	2.3e-16	49.1
WP_000615248.1\|4463384_4463732_+	DNA-binding protein	Q6QIE8	Burkholderia_phage	4.9e-21	51.5

DBSCAN-SWA_13

4490181 : 4534045

Shigella_phage(44.26%)

plate,terminase,head,portal,tail,protease,integrase,holin,tRNA,capsid

attL 4480753:4480768|attR 4541878:4541893

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
4480753:4480768	attL	NA	NA	NA	NA
WP_000549966.1\|4490181_4490616_+	hypothetical protein	A0A0S2SYH1	Pseudomonas_phage	5.2e-36	51.0
WP_001093909.1\|4490642_4490915_-	hypothetical protein	S5MQM5	Escherichia_phage	5.9e-38	86.7
WP_001061343.1\|4490951_4491524_-	3'-5' exoribonuclease	K7PLW7	Enterobacteria_phage	3.7e-106	96.8
WP_000206745.1\|4491523_4492333_-	hypothetical protein	Q8HAA7	Salmonella_phage	3.3e-76	61.8
WP_001565177.1\|4492332_4492695_-	phage protein	U5P092	Shigella_phage	1.5e-65	97.5
WP_000008210.1\|4492685_4493222_-	5'-deoxynucleotidase	U5P0T3	Shigella_phage	9.7e-101	99.4
WP_033567165.1\|4493349_4494174_-	DUF2303 family protein	U5P439	Shigella_phage	1.1e-148	98.9
WP_001323604.1\|4494239_4494620_-	hypothetical protein	U5P4J6	Shigella_phage	1.3e-62	100.0
WP_000141753.1\|4495039_4495285_+	hypothetical protein	NA	NA	NA	NA
WP_001514782.1\|4495202_4495478_-	hypothetical protein	Q8SBF7	Shigella_phage	7.0e-47	97.8
WP_001369946.1\|4495486_4495690_-	ClpX C4-type zinc finger	A0A1C9IHZ4	Salmonella_phage	8.9e-15	68.3
WP_000848748.1\|4495861_4496536_-	LexA family transcriptional repressor	U5P0T5	Shigella_phage	1.2e-132	100.0
WP_000649477.1\|4496626_4496827_+	transcriptional regulator	U5P445	Shigella_phage	7.9e-32	100.0
WP_000515829.1\|4496870_4497428_+	protein YmfL	S5FXP0	Shigella_phage	1.1e-96	96.2
WP_001250269.1\|4497603_4497783_+	DUF4222 domain-containing protein	S5M7S5	Escherichia_phage	7.8e-15	68.5
WP_000104942.1\|4497772_4498714_+	helix-turn-helix domain-containing protein	U5P0A0	Shigella_phage	1.7e-140	93.3
WP_086936917.1\|4498710_4499205_+	PerC family transcriptional regulator	A0A291AWV6	Escherichia_phage	4.7e-86	97.5
WP_001433188.1\|4499204_4499858_+	phage N-6-adenine-methyltransferase	A5LH72	Enterobacteria_phage	5.6e-127	99.1
WP_000210170.1\|4499854_4500181_+	LexA family transcriptional regulator	A0A291AWY9	Escherichia_phage	5.4e-54	100.0
WP_001398927.1\|4500177_4500567_+	RusA family crossover junction endodeoxyribonuclease	A0A291AX14	Escherichia_phage	5.4e-69	100.0
WP_001061444.1\|4500586_4501396_+	KilA-N domain-containing protein	A0A291AWU7	Escherichia_phage	1.8e-151	100.0
WP_033567167.1\|4501403_4502393_+	DUF968 domain-containing protein	A0A291AWV9	Escherichia_phage	2.1e-194	99.4
WP_048306282.1\|4502406_4503159_+	antitermination protein	A0A192Y5X6	Salmonella_phage	9.0e-145	99.6
WP_001624505.1\|4503309_4503567_+	hypothetical protein	A0A1C9IHX4	Salmonella_phage	3.1e-41	100.0
WP_001283169.1\|4503712_4504099_+	membrane protein	A0A192Y8P2	Salmonella_phage	7.0e-61	100.0
WP_000422366.1\|4504085_4504367_+\|holin	phage holin family protein	K7PKN9	Enterobacterial_phage	9.7e-20	45.2
WP_001624504.1\|4504366_4504981_+	glycoside hydrolase family 19 protein	A0A192Y6G4	Salmonella_phage	5.7e-113	100.0
WP_001530346.1\|4504977_4505370_+	DUF2570 domain-containing protein	A0A192Y6H8	Salmonella_phage	2.8e-65	100.0
WP_097053918.1\|4505254_4505533_+	peptidase	Q8SBD8	Shigella_phage	1.3e-24	74.4
WP_001379492.1\|4505832_4506165_+	hypothetical protein	A0A192Y5Y1	Salmonella_phage	2.8e-58	100.0
WP_001135098.1\|4506215_4506566_+	HNH endonuclease	M1FQV2	Enterobacteria_phage	9.8e-62	94.8
WP_048306293.1\|4506691_4507177_+\|terminase	phage terminase small subunit P27 family	Q8SBI1	Shigella_phage	6.1e-86	98.8
WP_000088161.1\|4507190_4508924_+\|terminase	terminase large subunit	U5P0Q5	Shigella_phage	0.0e+00	100.0
WP_000605606.1\|4508935_4509118_+	hypothetical protein	S5FXQ9	Shigella_phage	1.7e-25	100.0
WP_001514795.1\|4509117_4510359_+\|portal	phage portal protein	U5P411	Shigella_phage	5.0e-241	99.5
WP_021578635.1\|4510336_4510987_+\|head,protease	HK97 family phage prohead protease	U5P4H2	Shigella_phage	3.6e-118	99.1
WP_021567480.1\|4511001_4512207_+\|capsid	phage major capsid protein	M1FPN2	Enterobacteria_phage	3.5e-223	99.5
WP_021577001.1\|4512256_4512484_+	hypothetical protein	S5FNU1	Shigella_phage	2.2e-22	94.9
WP_000927719.1\|4512458_4512782_+\|head,tail	phage gp6-like head-tail connector protein	U5P072	Shigella_phage	1.1e-56	99.1
WP_000702388.1\|4512778_4513189_+\|head	phage head closure protein	M1FJ87	Enterobacteria_phage	5.9e-74	97.8
WP_022630978.1\|4513163_4513670_+	hypothetical protein	M1FPE2	Enterobacteria_phage	5.0e-91	99.4
WP_000779279.1\|4513666_4514227_+	hypothetical protein	M1FQV7	Enterobacteria_phage	2.3e-105	99.5
WP_000497751.1\|4514235_4514406_+	DUF2635 domain-containing protein	Q8SBH3	Shigella_phage	9.3e-26	100.0
WP_022630977.1\|4514389_4515886_+\|tail	tail sheath protein	M1FN90	Enterobacteria_phage	7.7e-273	99.0
WP_000090998.1\|4515885_4516242_+	hypothetical protein	U5P076	Shigella_phage	5.3e-63	100.0
WP_000661047.1\|4516241_4516511_+\|tail	phage tail assembly protein	S5FNR3	Shigella_phage	3.5e-43	100.0
WP_015675131.1\|4516477_4516660_+	hypothetical protein	NA	NA	NA	NA
WP_023200330.1\|4516652_4518485_+\|tail	phage tail tape measure protein	S5FM63	Shigella_phage	4.7e-304	99.2
WP_001439754.1\|4518566_4519079_+	hypothetical protein	NA	NA	NA	NA
WP_000219913.1\|4519169_4520498_+	DNA circularization protein	Q8SBG8	Shigella_phage	8.4e-247	99.3
WP_000999499.1\|4520494_4521574_+\|plate	baseplate protein	Q8SBG7	Shigella_phage	5.3e-207	99.7
WP_022630975.1\|4521573_4522122_+\|plate	phage baseplate assembly protein V	U5P081	Shigella_phage	1.9e-96	97.8
WP_000424732.1\|4522121_4522547_+	hypothetical protein	U5P0R9	Shigella_phage	2.3e-81	100.0
WP_022630974.1\|4522533_4523592_+\|plate	baseplate J/gp47 family protein	Q8SBG4	Shigella_phage	5.2e-199	98.6
WP_000383548.1\|4523582_4524167_+	YmfQ family protein	O22003	Shigella_phage	1.1e-113	100.0
WP_023200332.1\|4524170_4525703_+	hypothetical protein	A0A1B0VFW4	Salmonella_phage	1.6e-241	97.9
WP_006678265.1\|4525672_4526290_+\|tail	tail fiber assembly protein	A0A1B0VCD0	Salmonella_phage	5.7e-113	100.0
WP_001747940.1\|4526293_4526701_-\|tail	tail assembly chaperone	A0A1B0V844	Salmonella_phage	4.9e-73	100.0
WP_006678262.1\|4526702_4527431_-	hypothetical protein	A0A1B0V7G4	Salmonella_phage	2.8e-143	100.0
WP_000639149.1\|4527756_4528320_+	recombinase family protein	K7PJT4	Enterobacteria_phage	3.4e-80	79.1
WP_077248251.1\|4528344_4528467_+\|capsid	capsid protein	Q9JFR8	Wheat_rosette_stunt_virus	2.0e-06	73.5
WP_033567204.1\|4528463_4528712_-	DinI-like family protein	K7PLW4	Enterobacteria_phage	2.0e-37	98.8
WP_000332264.1\|4528773_4529871_-\|integrase	site-specific integrase	S5MDN5	Escherichia_phage	4.3e-212	100.0
WP_022630972.1\|4529959_4530997_+\|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	NA	NA	NA	NA
WP_000891414.1\|4531164_4531407_+	envelope stress response protein PspG	NA	NA	NA	NA
WP_000235551.1\|4531581_4532565_-	quinone oxidoreductase	NA	NA	NA	NA
WP_000918353.1\|4532629_4534045_+	replicative DNA helicase DnaB	A0A1B0VG30	Salmonella_phage	7.0e-199	78.4
4541878:4541893	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP044962

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NZ_CP044961

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection