CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP023396	Pseudoalteromonas ruthenica strain LMG 19699 chromosome 1, complete sequence	3 crisprs	cas3,DEDDh,DinG,csa3	0	0	3	0
NZ_CP023397	Pseudoalteromonas ruthenica strain LMG 19699 chromosome 2, complete sequence	1 crisprs	NA	0	1	0	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP023396_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP023396_1

90897-91003

Orphan

Consensus_repeat	Method
CTGTAGGCAAGGCTTTAGCCTTGCA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP023396_1

>merge|NZ_CP023396|1|90897-91003|CRISPRCasFinder
CTGTAGGCAAGGCTTTAGCCTTGCATCACCCCAGTCAGGGTAAACCCTGACCCACAACACAGCTAAACATTCATCACCATATCTGTAGGCAAGGCTTTTAGCCTTGC

>NZ_CP023396|1|1|90897-91003|CRISPRCasFinder
CTGTAGGCAAGGCTTTAGCCTTGCA	TCACCCCAGTCAGGGTAAACCCTGACCCACAACACAGCTAAACATTCATCACCATAT
CTGTAGGCAAGGCTTTTAGCCTTGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP023396.1\|WP_151172270.1\|76575_79176_+\|response-regulator	unknown	unknown	gnl\|CDD\|274362
NZ_CP023396.1\|WP_082079322.1\|83790_85218_+\|guanosine-5'-triphosphate,3'-diphosphate-diphosphatase	unknown	unknown	gnl\|CDD\|236826
NZ_CP023396.1\|WP_022946250.1\|91988_93374_-\|class-II-fumarate-hydratase	unknown	unknown	gnl\|CDD\|234779
NZ_CP023396.1\|WP_022946252.1\|93822_94296_-\|DNA-starvation/stationary-phase-protection-protein	unknown	unknown	gnl\|CDD\|223854
NZ_CP023396.1\|WP_022943568.1\|81979_82306_-\|thioredoxin-TrxA	unknown	unknown	gnl\|CDD\|181812
NZ_CP023396.1\|WP_022946258.1\|97437_97902_+\|DUF2383-domain-containing-protein	unknown	unknown	unknown
NZ_CP023396.1\|WP_022943569.1\|80546_81806_-\|transcription-termination-factor-Rho	unknown	unknown	gnl\|CDD\|236490
NZ_CP023396.1\|WP_151172267.1\|73595_75665_-\|TonB-dependent-siderophore-receptor	unknown	unknown	gnl\|CDD\|238657
NZ_CP023396.1\|WP_022943567.1\|82397_83669_+\|ATP-dependent-RNA-helicase-RhlB	unknown	unknown	gnl\|CDD\|235314
NZ_CP023396.1\|WP_130144982.1\|93384_93747_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP023396.1\|WP_151172271.1\|79167_80430_-\|methyl-accepting-chemotaxis-protein	unknown	unknown	gnl\|CDD\|206779
NZ_CP023396.1\|WP_045980248.1\|97938_98718_+\|VOC-family-protein	unknown	unknown	gnl\|CDD\|319911
NZ_CP023396.1\|WP_045980246.1\|94585_94783_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP023396.1\|WP_045980247.1\|94779_95376_-\|alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|224001
NZ_CP023396.1\|WP_151172273.1\|91370_91895_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP023396.1\|WP_151172268.1\|75716_76316_-\|DnaJ-domain-containing-protein	unknown	unknown	gnl\|CDD\|378839
NZ_CP023396.1\|WP_022946257.1\|96060_97005_+\|ribosome-biogenesis-GTPase-YlqF	unknown	unknown	gnl\|CDD\|236570
NZ_CP023396.1\|WP_151172269.1\|76388_76604_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP023396.1\|WP_151172266.1\|72090_73485_-\|M20/M25/M40-family-metallo-hydrolase	unknown	unknown	gnl\|CDD\|349879
NZ_CP023396.1\|WP_022946256.1\|95408_95954_-\|YaeQ-family-protein	unknown	unknown	gnl\|CDD\|377782

Protein	Function_ID	Function_description	E-value
NZ_CP023396.1\|WP_151172270.1\|76575_79176_+\|response-regulator	gnl\|CDD\|274362	TIGR02956, sensor_protein_TorS, TMAO reductase sytem sensor TorS. This protein, TorS, is part of a regulatory system for the torCAD operon that encodes the pterin molybdenum cofactor-containing enzyme trimethylamine-N-oxide (TMAO) reductase (TorA), a cognate chaperone (TorD), and a penta-haem cytochrome (TorC). TorS works together with the inducer-binding protein TorT and the response regulator TorR. TorS contains histidine kinase ATPase (pfam02518), HAMP (pfam00672), phosphoacceptor (pfam00512), and phosphotransfer (pfam01627) domains and a response regulator receiver domain (pfam00072). [Signal transduction, Two-component systems].	7.50808e-73
NZ_CP023396.1\|WP_082079322.1\|83790_85218_+\|guanosine-5'-triphosphate,3'-diphosphate-diphosphatase	gnl\|CDD\|236826	PRK11031, PRK11031, guanosine-5'-triphosphate,3'-diphosphate diphosphatase.	0
NZ_CP023396.1\|WP_022943567.1\|82397_83669_+\|ATP-dependent-RNA-helicase-RhlB	gnl\|CDD\|235314	PRK04837, PRK04837, ATP-dependent RNA helicase RhlB; Provisional.	0
NZ_CP023396.1\|WP_022943568.1\|81979_82306_-\|thioredoxin-TrxA	gnl\|CDD\|181812	PRK09381, trxA, thioredoxin TrxA.	2.14558e-57
NZ_CP023396.1\|WP_045980248.1\|97938_98718_+\|VOC-family-protein	gnl\|CDD\|319911	cd07247, SgaA_N_like, N-terminal domain of Streptomyces griseus SgaA and similar domains. SgaA suppresses the growth disturbances caused by high osmolarity and a high concentration of A-factor, a microbial hormone, during the early growth phase in Streptomyces griseus. A-factor (2-isocapryloyl-3R-hydroxymethyl-gamma-butyrolactone) controls morphological differentiation and secondary metabolism in Streptomyces griseus. It is a chemical signaling molecule that at a very low concentration acts as a switch for yellow pigment production, aerial mycelium formation, streptomycin production, and streptomycin resistance. The structure and amino acid sequence of SgaA are closely related to a group of antibiotics resistance proteins, including bleomycin resistance protein, mitomycin resistance protein, and fosfomycin resistance proteins. SgaA might also function as a streptomycin resistance protein.	8.74197e-41
NZ_CP023396.1\|WP_022943569.1\|80546_81806_-\|transcription-termination-factor-Rho	gnl\|CDD\|236490	PRK09376, rho, transcription termination factor Rho; Provisional.	0
NZ_CP023396.1\|WP_151172267.1\|73595_75665_-\|TonB-dependent-siderophore-receptor	gnl\|CDD\|238657	cd01347, ligand_gated_channel, TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) anti-parallel beta-barrel. Ligands apparently bind to the large extracellular loops. The N-terminal 150-200 residues form a plug from the periplasmic end of barrel. Energy (proton-motive force) and TonB-dependent conformational alteration of channel (parts of plug, and loops 7 and 8) allow passage of ligand. FepA residues 12-18 form the TonB box, which mediates the interaction with the TonB-containing inner membrane complex. TonB preferentially interacts with ligand-bound receptors. Transport thru the channel may resemble passage thru an air lock. In this model, ligand binding leads to closure of the extracellular end of pore, then a TonB-mediated signal facillitates opening of the interior side of pore, deforming the N-terminal plug and allowing passage of the ligand to the periplasm. Such a mechanism would prevent the free diffusion of small molecules thru the pore.	1.87107e-77
NZ_CP023396.1\|WP_022946250.1\|91988_93374_-\|class-II-fumarate-hydratase	gnl\|CDD\|234779	PRK00485, fumC, fumarate hydratase; Reviewed.	0
NZ_CP023396.1\|WP_022946252.1\|93822_94296_-\|DNA-starvation/stationary-phase-protection-protein	gnl\|CDD\|223854	COG0783, Dps, DNA-binding ferritin-like protein (oxidative damage protectant) [Inorganic ion transport and metabolism].	2.62324e-55
NZ_CP023396.1\|WP_151172271.1\|79167_80430_-\|methyl-accepting-chemotaxis-protein	gnl\|CDD\|206779	cd11386, MCP_signal, Methyl-accepting chemotaxis protein (MCP), signaling domain. Methyl-accepting chemotaxis proteins (MCPs or chemotaxis receptors) are an integral part of the transmembrane protein complex that controls bacterial chemotaxis, together with the histidine kinase CheA, the receptor-coupling protein CheW, receptor-modification enzymes, and localized phosphatases. MCPs contain a four helix trans membrane region, an N-terminal periplasmic ligand binding domain, and a C-terminal HAMP domain followed by a cytoplasmic signaling domain. This C-terminal signaling domain dimerizes into a four-helix bundle and interacts with CheA through the adaptor protein CheW.	4.6528e-45
NZ_CP023396.1\|WP_045980247.1\|94779_95376_-\|alpha/beta-hydrolase	gnl\|CDD\|224001	COG1075, LipA, Predicted acetyltransferases and hydrolases with the alpha/beta hydrolase fold [General function prediction only].	1.96612e-12
NZ_CP023396.1\|WP_151172268.1\|75716_76316_-\|DnaJ-domain-containing-protein	gnl\|CDD\|378839	pfam12339, DNAJ_related, DNA-J related protein. This domain family is found in bacteria, and is approximately 130 amino acids in length. The family is found in association with pfam00226. There is a conserved YYLD sequence motif. Mostof the sequences in this family are annotated as DNA-J related proteins but there is little publication to back this up.	1.09677e-26
NZ_CP023396.1\|WP_022946257.1\|96060_97005_+\|ribosome-biogenesis-GTPase-YlqF	gnl\|CDD\|236570	PRK09563, rbgA, GTPase YlqF; Reviewed.	1.56019e-152
NZ_CP023396.1\|WP_151172266.1\|72090_73485_-\|M20/M25/M40-family-metallo-hydrolase	gnl\|CDD\|349879	cd03883, M28_Pgcp_like, M28 Zn-Peptidase Plasma glutamate carboxypeptidase. Peptidase M28 family; Plasma glutamate carboxypeptidase (PGCP; blood plasma glutamate carboxypeptidase; EC 3.4.17.21) subfamily. PGCP is a 56kDa glutamate carboxypeptidase that is mainly produced in mammalian placenta and kidney, the majority of which is thought to be secreted into the bloodstream. Similar proteins are also found in other species, including bacteria. These proteins contain protease-associated (PA) domain inserts between the first and second strands of the central beta sheet in the protease-like domain. The PA domains may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. The exact physiological substrates of PGCP are unknown, although this enzyme may play an important role in the hydrolysis of circulating peptides. Its closest homolog encodes an important brain glutamate carboxypeptidase II (NAALADase) identical to the prostate-specific membrane antigen (PSMA), which serves as a marker for prostatic cancer metastasis. Hypermethylation of PGCP gene has been associated with human bronchial epithelial (HBE) cell immortalization and lung cancer. PGCP also provides an attractive target for serological analysis in hepatitis C virus (HCV)-induced hepatocellular carcinoma (HCC) patients.	4.21613e-155
NZ_CP023396.1\|WP_022946256.1\|95408_95954_-\|YaeQ-family-protein	gnl\|CDD\|377782	pfam07152, YaeQ, YaeQ protein. This family consists of several hypothetical bacterial proteins of around 180 residues in length which are often known as YaeQ. YaeQ is homologous to RfaH, a specialized transcription elongation protein. YaeQ is known to compensate for loss of RfaH function.	2.44074e-92

>NZ_CP023396.1|WP_082079322.1|83790_85218_+|guanosine-5'-triphosphate,3'-diphosphate-diphosphatase
MLIAKTVAGSLQTIGRVKRKVRLAAGLDAQMCLSQEAMERGWECLALFAERLQDIPAHQVCIVATATLRLATNAEEFKNRAQEILGHPVNVISGEEEAKTIYQGVAHTSSCSGKQLVIDIGGASTEVVIGEGSHPIHYQSLNMGCVTYLEAYFKDGALSQENYNAAIAAAKNIVEPIAAKYKHTGWDYAAGASGTVQAIQEIMVAQRQDETLTLDKLHDIRQLTVQYSNIDSLQLPGLSEERRLVFVSGLAILIAIFEVLEIEAMGLAGGALREGVLYSMIPELQRKDIRQRTIDSFVTRYHVDHSQGERVACIAKLLATQLASDWHLNETDHALLHSAAKLHEVGLLIEYKQYPKHGAYILKNTDMPGFTRQQHLLVTKLVQSHKGDLSANQFESLGAHQQLAICLVRVLRLAVILSMRRKDDVLPQLAINAQGEALILSIDSQWLKQHPLMLSELNQETLYQRNAGWKLTIQQ
>NZ_CP023396.1|WP_022943567.1|82397_83669_+|ATP-dependent-RNA-helicase-RhlB
MNKTHLTDKKFADFALAPEVVAGLQASGFEYCTPIQAKCMPYIMAGQDIAGQAQTGTGKTLAFLTATCHYLLRSQKPSGQQPRALIMAPTRELAIQIHKDAEILAPHCNLKLGLLYGGEDYEKQRAQLEKGVDILIGTTGRLIDLYKQGCYTLNDIEVVVLDEADRMFDLGFIKDIRYMFRRMPEASERLNLLFSATLSYRVQELAFEHMTNPEHVQIEPDVKTGKRIQEELFHPSQEDKMKLLLTLIEEEWPDKAIVFANTKHSCETVYAWLKADDHRVGLLTGDVNQKKRQSILAQFTKGDLDFLVATDVAARGLHIPEVSHVFNYDLPDDCEDYVHRIGRTGRAGASGHAISFACEQYAYNLQEIEEYIEHSIPLSHYDKSALLDDIKAPKMIKRRGPQGRSRNGGRGQGQGQNRRRQPR
>NZ_CP023396.1|WP_022943568.1|81979_82306_-|thioredoxin-TrxA
MSDKIIQLTDDSFDADVLQSDKPVLVDFWAEWCGPCKMIAPILDEVAGEFDGRVSIGKLNIDQNAGTPPKFGIRGIPTLLLFKDGQVAATKVGALSKAQLVEFLENNL
>NZ_CP023396.1|WP_022943569.1|80546_81806_-|transcription-termination-factor-Rho
MHLRELKDKSIKELVKLAESMGLENVARLRKQDIIFSILKAHAKSGENIYGGGVLEILQDGFGFLRSSEASYLAGPDDIYVSPSQIRRFSLRTGDTIAGLIRPPKDGERYFALLKVNEVNFDKPENSRTKILFENLTPLHANERLRMERGNGSTEDITARVLDLASPIGKGQRALIVAPPKAGKTMLLQNIAQSISYNQPDCELMVLLIDERPEEVTEMQRLVKGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSGKVLTGGVDANALHKPKRFFGAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMELHLNRKIAEKRVFPAIDFNRSGTRREELLTKADELQKMWILRKIVHDMSEIDAMEFLIDKLAMCKTNDEFFDSMKRK
>NZ_CP023396.1|WP_151172271.1|79167_80430_-|methyl-accepting-chemotaxis-protein
MNLRNFYLLFVAVLTLTQVIVAYQFTSSWWHTALILLPTVVILALFIYVLKQGSVQDHELTADLAQHLVDGEKVNVSFRFDDSKHAPQSYLVFNSCLATIEHLIMEIHASSARLLPMADELTDTYSSVTQKAMMQSTHGNDMVNSFNDMLHITTQLGDGIDNICGSLELATNSVKQTKIDADKSQRSMQTLSSQIAQTNDELAQLQQDSEKISSVIDVINAIAEQTNLLALNAAIEAARAGEMGRGFAVVADEVRHLAARTTKSTNEVREMVQHIQQGTQRVTELMQQSISLTQETVELSAQATNEVDQIEHSMLDISAHSEQIRSQLQQQHTLSDRAQSCVDAMQELNSDALSSSRIQSVSSQDLLNLAQCIEQKISLFITSEEHYDTRKRNDPSRKHIDALPQKTSHSEDLTGDIDLF
>NZ_CP023396.1|WP_151172270.1|76575_79176_+|response-regulator
MPLSPNSFFEDSNYEKAARYYLRAEQLAAKHGTVIEHSRYAQMQGVSHYYRGQDLTAIEDYLRAIEIIEQIDKPIIAAHLYNNIGLAYSGADQIEAAIASYSKAKELYDEYGDEYDQVNIMHNIAVAYMDWYRFEAAFDIYEQIGDSFERLGDTIGQAQMETNLGSIYQSRMDFEQAEIYYQKALVKYQENGDRPNHIVNLIRLAELNFVQGRFDAAYTQMRDAQAQAEVMDNLHYNSNIKEIEAKLLFAKGQYKQAQQALREVYTMREQVTDDKASPAISLIELLVTAAQGDHVKSALLYERYERQQQEMLSNKIASSLNDFQAKYNATELQQQVDSLKQQQQLDKLEAQQRRQMTFLAAGILILAFISIVLLFRRSAERKATAMLEDKVKQRTKELEELADQLSAANEIKSQFLANISHEIRTPLTSIMGQAQAIIEGDVPAEQVAKELRVIYNNSQHLGELINDVLDLSKIEANKLELVISTVSICSLLADINAMFQPSASQKGILFRINNKLPASFGAEFDYIRVKQVLVNLCSNAVKFTEQGEVELAITADEQGVCFRVKDTGIGIAEDKLDAIFANFSQGDNSISRRFGGTGLGLSLSQQLAQIMGGDISVSSVLGQGSTFSFYIPCRCMEMDERSNDTIQAARALSFSGEVVLAEDHEDNRRLIERLLTNLGIKVHSAANGEQAVELTLQHCPDLVLMDIQMPKMDGLEALNLLRQCGYTQPIIALTANAMTHDIERYKAAGFTNHLAKPIEKEEFCRTLEHFLNVEIDARAAQSVDMSDLHESFMHTLPREIESLVSAHARNDLDEIKAVAHRLAGAAQMFASQTIAELVCDIELAAKYQDKEQVGVLIEDLANLELK
>NZ_CP023396.1|WP_151172269.1|76388_76604_+|hypothetical-protein
MSQRKLPRLLVCIQLLVCSLFTSLSYGDALIDDIRSQPQQLQRDYAISKLAQPLSEPQQLAVNAFIAKQFF
>NZ_CP023396.1|WP_151172268.1|75716_76316_-|DnaJ-domain-containing-protein
MDDSHYNPLIEPILALLTDGQSWKVHTLASQLRAHGHLGRLDEDSMADLAKRNFIIMNALFQLQDELLKSDCYLSISSLHIQLVYGHPKQRPSSNDSLREYYLNWQNYALSREQVIDLLDQFWQALPINTLDDTTLARINKRWKLSQPIQMQALKKRWRTLALAYHPDKNTHSNADFQQIHNEYQQLLQYVRVKNNNCN
>NZ_CP023396.1|WP_151172267.1|73595_75665_-|TonB-dependent-siderophore-receptor
MNRHALTLAIAAAFPTATLATENMEKIEVVGSYFNDYKVDSASGALRTNTSLLETAQSVTVIPDTVVNEQLATTLGEVLSNDASLTSGSKQRNRETFNMRGFGLSSSTGYLRDGHQHWSHYQQPIEILERVEVIKGPSSILYGQSGPGGLVNMVTKKPTANQFINLAADIDQHGSTRFMLDASSALTEDERLRGRGVLVKQDVNFWREYPNGEERERDRFLGAVVLDYDLTDDTLIRVHYDRTDDKTGLDTGAWLNNDGELIGDDKTIYDFSWAFTDITVENIGLDVRHFINNQWQVKVGYNEQTFERQRFESAPRKPSDYQVGDSYTSRPYDRFDDWQFTTAYIDFVGEFKLANMQHQLLIGANSLDYYYGQLRTRADAVDYTLAQQQPSRPNVSYQSDDSLYTAEYDYYGIYIQDLITVNPQWQVSIGGRYDKQNKTGADNESVLPKLGVLYHPLDTATIYLSYSEGFEPQGADKLNNETDKNHNMKLDAVTSEQIELGAKWQLFDDRLLLSGSLFDISKDGTLVTELVEHPDYDSITTQVGEQRHKGLELAAQGAVTDRFFVMASTMYLNAQYERDENYEGNRPADAPKWSASLWSRYELNDALAFNAGVFYTGKRFADSANTVEKDAYTRVDVGATYALKLAGNDIDLRLNIENLFDTDYLAGGGVSNVTVGEGTNFRLAVQFSF
>NZ_CP023396.1|WP_151172266.1|72090_73485_-|M20/M25/M40-family-metallo-hydrolase
MKFVSLLALPLLALAPIQQAAAEQFTTEQLQHTAQIRQQAQNSELSWQLVESLTTEVGPRLPGTENDKKAVAWAKAQFERLGFDKVWLEKAHFPHWRRYHESGHILTPSKQPLHLTALGNSVSTAKDGLTAPIVLFETLAELQAAPAGSLAGKIAYVNYRMDRDIDGNGYGPAVKARSSGAVVAAQKGAIGYMMRSVSTSHHRFAHTGGSHYKEGVSKIPNVAIANPDADQIARLIALGEQVTVHINIQTEDLGQGESYNVIGEITGHSKPDEYVLLASHLDSWDLGTGALDDGAGVAITMAAAKHVAAVKRPQRSIRVVLFAAEELGLWGAKDYVKAHSDELDHIVAAAESDFGADVVYAFESNVHAQSLPIVRAIAEQLRPLDVTYIGANSARGGPDLIPFERAQSSPIFALHQDGTDYFDYHHTADDTLDKIEPHKLKQNTAAYAVFAYMAADAKDKIQAK
>NZ_CP023396.1|WP_151172273.1|91370_91895_-|hypothetical-protein
MRHLIIPLALLSLTACQNNELQNTTGEVETAAERASSESTTDNLGKDKRIDGEQLSQPINEERAISATEQSIKADYQRLEALTQDKSCDSASQCKVVAVGSRACGGPSQYLVYSSKSADPQQVSALANSLAAQESQLNAEKGMMSICQHLTRPATQCKSKQCVAVQSNVNQETY
>NZ_CP023396.1|WP_022946250.1|91988_93374_-|class-II-fumarate-hydratase
MSTEYRHEKDSMGELQVPADALYQAQTQRAVNNFHISAMRMPARFIQALAQIKRAAATVNTELGHLDANVGGAIDNACREIIAGEHLEHFPVDVFQTGSGTSTNMNANEVIATRASQLLGDNVHPNDHVNMGQSSNDVIPTAIHVSSALAIEKELIPALDHLISVIEAKIEQVGSHVKTGRTHLMDAMPVTFAQSMSAWREQVVKAKQQISASAEHLHQLAQGGTAVGTGINADPEFSARFAKQLAAQTDSHFQGAENLFYHIATQDSVVAVSGQLKTAAVAFMKIANDLRWMNSGPLGGIGEIELEALQPGSSIMPGKVNPVIPEATAMVSAQVIGNDSTITVAGQAGNFELNVMLPVIAYNVLQSIELLTNTSYALADKAIASFVVREDNLQRSLAKNPILVTALNPIIGYEKAAAIAKQAYKENKAILDVAAAQTDIPYKELEKLLDPKGLTLGGIQK
>NZ_CP023396.1|WP_130144982.1|93384_93747_-|hypothetical-protein
MPQISLEFLGAQLRRLSRCQRGQAPNLVAQFIETGLHWARYYGARQMYLLQELYLRRTFYQLVNIICDPLLEQQVRKQSLCQLHKPQLALQRFYRQQQGMHKYRALSQEARVLCHEFNPY
>NZ_CP023396.1|WP_022946252.1|93822_94296_-|DNA-starvation/stationary-phase-protection-protein
MSQINAIGLDSEETQNVIESLNRLLSCYQIQYMNARGFHWNIKGRDFFELHVKFEEIYNLLLEKVDEIAERILTLGGEPLHAFSDFIELSQINEVKNVSDGGQAVQSLVDGYSTLIKMQRKVLSDAGDNQDEGTAALMSDYIKEQEKLVWMLKAYLD
>NZ_CP023396.1|WP_045980246.1|94585_94783_+|hypothetical-protein
MTKAKKAEITVCIIAVLTFVIGLVGHLAGASYANSDAFGIIAAPIPLVVGVIAVIAYKIAAAAED
>NZ_CP023396.1|WP_045980247.1|94779_95376_-|alpha/beta-hydrolase
MITKVVVLHGLYMSGFVMRPLCARLKKQGYGILNVSYNTLNPDTDKIFAQINDFIADDQCAFVCHSLGGLIARQYLSQAFPQTDQVKKVFTLGTPHKGAQIARHMQDRGMQALLKNSLEYLVSESQDWPFSAQLYSIAGDLPFGLLPLFEQGKPSDGTVMVDETRVSGMAQHKVFHLSHTSLIYSRKVVDYILAQLKT
>NZ_CP023396.1|WP_022946256.1|95408_95954_-|YaeQ-family-protein
MALKATIIKARLNISDLNRHHYQQYSFTLAQHPSETDQRMMIRVLAFALNANDNLVFTKGLCADDEPELWWINDDDSIHLWVELGLADDKRLKKACSRAQQVLLYAYGEGSQQAWWQKHQAKLAGFDNLRIVSLAYEDTQKLAAMASRSLDLTITIEDNEVWVSDSETSLQIPLTLLQGQG
>NZ_CP023396.1|WP_022946257.1|96060_97005_+|ribosome-biogenesis-GTPase-YlqF
MAIQWFPGHMNKARNEIKEIMPQMDVIIEVLDARIPYSSENPMVGALRGDKPVIKILNKADLADPQMTTQWMDYLERENGVKAMPLANDKAGHTGKVIELCKKLVPHKVGADKQIKAMIMGIPNVGKSTLINTLAGRIVAKTGNEPAVTKAQQRIKIDEGIMLYDTPGMLWPKVENENSGYRLAATGAIRDTAIDYEEVASYTCEYLLQAYPALLSQRYKVSPLPEHDYDFMLAAGKNRGCLRGGNQVDLHKFAEILINELRDAVIGRITMETPQMREREEQMVAELRAAAEAKKAAKEEEKRQRRARARKNRR
>NZ_CP023396.1|WP_022946258.1|97437_97902_+|DUF2383-domain-containing-protein
MGLKIPTSVSSEQEQDIEIIDQLIESLENERVLIQDVQKHAEDESLQARMKVLHDHKRYLQTELAKAVGQQQQLDEVDTSLLGDLKEWQAKLESVVGDSVQAFLEELNSQQHKTLVQCRNAAQVMNDSQGAQEVETVIAQLETHEQYLKRFLNA
>NZ_CP023396.1|WP_045980248.1|97938_98718_+|VOC-family-protein
MSENYPQGHFCWTELCSSDWQGGKTFYSDLFTWSAEDQPIGNGLYYTMLKKPQGDVAAMYQMPADQHAQGVPSYWLSYIAVDDVDAMADKAKSLGATIVHGPHDVPEAGRMVLLCDPVGAMVALWQGQGHKGASVQNEVDTPCWFELATRDIESSTNFYSELLGWRAELKAMEGMDYTLFKAGDTMVGGMVAMDEQWPDDIPPHWMIYFSVNDCDAQAEQAKKLGGEVCVQPMDVPEVGRFCVLTDPQGAVFSIINLNQ

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Crispr_ID: NZ_CP023396_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP023396_2

1433578-1433691

Orphan

Consensus_repeat	Method
GGGTTCTTCTGTTGTTTGGTTCTGTTGT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP023396_2

>merge|NZ_CP023396|2|1433578-1433691|CRISPRCasFinder
GGGTTCTTCTGTTGTTTGGTTCTGTTGTAGGTCAGGGTTTACCCTGACAAAGGTGTCGCGAGGCTAGAGCCTTGCCTACAGGTGTGGGGTTCTACTGTTGTTTGGTTCTGTTGT

>NZ_CP023396|2|2|1433578-1433691|CRISPRCasFinder
GGGTTCTTCTGTTGTTTGGTTCTGTTGT	AGGTCAGGGTTTACCCTGACAAAGGTGTCGCGAGGCTAGAGCCTTGCCTACAGGTGTG
GGGTTCTACTGTTGTTTGGTTCTGTTGT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP023396.1\|WP_151173713.1\|1447112_1449428_+\|carbohydrate-binding-family-9-domain-containing-protein	unknown	unknown	gnl\|CDD\|187676
NZ_CP023396.1\|WP_022944541.1\|1445707_1446859_-\|dicarboxylate/amino-acid:cation-symporter	unknown	unknown	gnl\|CDD\|366058
NZ_CP023396.1\|WP_151172915.1\|1450645_1451080_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP023396.1\|WP_045978058.1\|1439548_1440961_+\|alanine:cation-symporter-family-protein	unknown	unknown	gnl\|CDD\|376500
NZ_CP023396.1\|WP_022944540.1\|1444979_1445630_-\|UvrY/SirA/GacA-family-response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|236538
NZ_CP023396.1\|WP_022943604.1\|1425178_1426624_-\|glyceraldehyde-3-phosphate-dehydrogenase	unknown	unknown	gnl\|CDD\|236219
NZ_CP023396.1\|WP_151173711.1\|1431541_1432228_-\|DnaA-regulatory-inactivator-Hda	unknown	unknown	gnl\|CDD\|181224
NZ_CP023396.1\|WP_022943602.1\|1427764_1428064_-\|integration-host-factor-subunit-alpha	unknown	unknown	gnl\|CDD\|178961
NZ_CP023396.1\|WP_022944538.1\|1442547_1443099_-\|CDP-diacylglycerol--glycerol-3-phosphate-3-phosphatidyltransferase	unknown	unknown	gnl\|CDD\|182763
NZ_CP023396.1\|WP_151172910.1\|1422127_1423795_-\|amino-acid-carrier-protein	unknown	unknown	gnl\|CDD\|273291
NZ_CP023396.1\|WP_151173714.1\|1451118_1453392_-\|acyl-CoA-dehydrogenase	unknown	unknown	gnl\|CDD\|237277
NZ_CP023396.1\|WP_151172911.1\|1423923_1425051_-\|carboxypeptidase-family-protein	unknown	unknown	gnl\|CDD\|349453
NZ_CP023396.1\|WP_151172912.1\|1426923_1427718_+\|DUF2989-domain-containing-protein	unknown	unknown	gnl\|CDD\|371419
NZ_CP023396.1\|WP_022944543.1\|1449560_1450529_+\|cysteine-synthase-A	unknown	unknown	gnl\|CDD\|273465
NZ_CP023396.1\|WP_151172913.1\|1428066_1430454_-\|phenylalanine--tRNA-ligase-subunit-beta	unknown	unknown	gnl\|CDD\|234804
NZ_CP023396.1\|WP_151173712.1\|1432249_1433266_-\|DUF2066-domain-containing-protein	unknown	unknown	gnl\|CDD\|378267
NZ_CP023396.1\|WP_022943600.1\|1430467_1431448_-\|phenylalanine--tRNA-ligase-subunit-alpha	unknown	unknown	gnl\|CDD\|234780
NZ_CP023396.1\|WP_151172914.1\|1441006_1441555_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP023396.1\|WP_022943607.1\|1421730_1422060_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP023396.1\|WP_022944539.1\|1443150_1444971_-\|excinuclease-ABC-subunit-UvrC	unknown	unknown	gnl\|CDD\|234792

Protein	Function_ID	Function_description	E-value
NZ_CP023396.1\|WP_151173713.1\|1447112_1449428_+\|carbohydrate-binding-family-9-domain-containing-protein	gnl\|CDD\|187676	cd09618, CBM9_like_2, DOMON-like type 9 carbohydrate binding module. Family 9 carbohydrate-binding modules (CBM9) play a role in the microbial degradation of cellulose and hemicellulose (materials found in plants). The domain has previously been called cellulose-binding domain. The polysaccharide binding sites of CBMs with available 3D structure have been found to be either flat surfaces with interactions formed by predominantly aromatic residues (tryptophan and tyrosine), or extended shallow grooves. CBM9 domains found in this uncharacterized subfamily are typically found at the N-terminus of longer proteins that lack additional annotation with domain footprints.	1.90428e-55
NZ_CP023396.1\|WP_045978058.1\|1439548_1440961_+\|alanine:cation-symporter-family-protein	gnl\|CDD\|376500	pfam01235, Na_Ala_symp, Sodium:alanine symporter family.	0
NZ_CP023396.1\|WP_022944540.1\|1444979_1445630_-\|UvrY/SirA/GacA-family-response-regulator-transcription-factor	gnl\|CDD\|236538	PRK09483, PRK09483, response regulator; Provisional.	6.00163e-151
NZ_CP023396.1\|WP_022943604.1\|1425178_1426624_-\|glyceraldehyde-3-phosphate-dehydrogenase	gnl\|CDD\|236219	PRK08289, PRK08289, glyceraldehyde-3-phosphate dehydrogenase; Reviewed.	0
NZ_CP023396.1\|WP_151173711.1\|1431541_1432228_-\|DnaA-regulatory-inactivator-Hda	gnl\|CDD\|181224	PRK08084, PRK08084, DnaA inactivator Hda.	6.32423e-85
NZ_CP023396.1\|WP_022943602.1\|1427764_1428064_-\|integration-host-factor-subunit-alpha	gnl\|CDD\|178961	PRK00285, ihfA, integration host factor subunit alpha; Reviewed.	5.2082e-61
NZ_CP023396.1\|WP_022944538.1\|1442547_1443099_-\|CDP-diacylglycerol--glycerol-3-phosphate-3-phosphatidyltransferase	gnl\|CDD\|182763	PRK10832, PRK10832, CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase.	5.42814e-69
NZ_CP023396.1\|WP_151172910.1\|1422127_1423795_-\|amino-acid-carrier-protein	gnl\|CDD\|273291	TIGR00835, carrier_protein, amino acid carrier protein. The Alanine or Glycine: Cation Symporter (AGCS) Family (TC 2.A.25) Members of the AGCS family transport alanine and/or glycine in symport with Na+ and or H+.	1.62285e-151
NZ_CP023396.1\|WP_151173714.1\|1451118_1453392_-\|acyl-CoA-dehydrogenase	gnl\|CDD\|237277	PRK13026, PRK13026, acyl-CoA dehydrogenase; Reviewed.	0
NZ_CP023396.1\|WP_151172911.1\|1423923_1425051_-\|carboxypeptidase-family-protein	gnl\|CDD\|349453	cd06234, M14_PaCCP-like, Peptidase M14-like domain of ATP/GTP binding proteins and cytosolic carboxypeptidases similar to Pseudomonas aerugnosa CCP (PaCCP). A bacterial subgroup of the Peptidase M14-like domain of Nna-1 (Nervous system Nuclear protein induced by Axotomy), also known as ATP/GTP binding protein (AGTPBP-1) and cytosolic carboxypeptidase (CCP)-like proteins. This subgroup includes PaCCP from Pseudomonas aeruginosa, a carboxypeptidase homologous to M14D subfamily of human CCPs. Structural complexes with well-known inhibitors of metallocarboxypeptidases indicate that PaCCP might only possess C-terminal hydrolase activity against cellular substrates of particular specificity. The Peptidase M14 family of metallocarboxypeptidases are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. Nna1-like proteins are active metallopeptidases that are thought to act on cytosolic proteins (such as alpha-tubulin in eukaryotes) to remove a C-terminal tyrosine. Nna1-like proteins from the different phyla are highly diverse, but they all contain a unique N-terminal conserved domain right before the CP domain. It has been suggested that this N-terminal domain might act as a folding domain.	4.90845e-161
NZ_CP023396.1\|WP_151172912.1\|1426923_1427718_+\|DUF2989-domain-containing-protein	gnl\|CDD\|371419	pfam11207, DUF2989, Protein of unknown function (DUF2989). Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.	1.11733e-75
NZ_CP023396.1\|WP_022944543.1\|1449560_1450529_+\|cysteine-synthase-A	gnl\|CDD\|273465	TIGR01139, Cysteine_synthase, cysteine synthase A. This model distinguishes cysteine synthase A (CysK) from cysteine synthase B (CysM). CysM differs in having a broader specificity that also allows the use of thiosulfate to produce cysteine thiosulfonate. [Amino acid biosynthesis, Serine family].	4.4216e-169
NZ_CP023396.1\|WP_151172913.1\|1428066_1430454_-\|phenylalanine--tRNA-ligase-subunit-beta	gnl\|CDD\|234804	PRK00629, pheT, phenylalanyl-tRNA synthetase subunit beta; Reviewed.	0
NZ_CP023396.1\|WP_151173712.1\|1432249_1433266_-\|DUF2066-domain-containing-protein	gnl\|CDD\|378267	pfam09839, DUF2066, Uncharacterized protein conserved in bacteria (DUF2066). This domain, found in various prokaryotic proteins, has no known function.	5.07075e-64
NZ_CP023396.1\|WP_022943600.1\|1430467_1431448_-\|phenylalanine--tRNA-ligase-subunit-alpha	gnl\|CDD\|234780	PRK00488, pheS, phenylalanyl-tRNA synthetase subunit alpha; Validated.	0
NZ_CP023396.1\|WP_022944539.1\|1443150_1444971_-\|excinuclease-ABC-subunit-UvrC	gnl\|CDD\|234792	PRK00558, uvrC, excinuclease ABC subunit UvrC.	0
NZ_CP023396.1\|WP_022944541.1\|1445707_1446859_-\|dicarboxylate/amino-acid:cation-symporter	gnl\|CDD\|366058	pfam00375, SDF, Sodium:dicarboxylate symporter family.	1.32812e-66

>NZ_CP023396.1|WP_151173712.1|1432249_1433266_-|DUF2066-domain-containing-protein
MFIAFSSQAIEVKGLYQYQQPVDDKTRASRVTASQNALLNVVIKVTGEPDATNNQVVRGALSDISDYMTKFEYGDNEGQSYLNVQFDSNKVNTLVREAGLPLWGNRRPLVVIWLAIEDGWRRELLTADTHPQVEGLLSDRASRRGLPIVTPLLDLEDRQHVEVTDVWGNFSDSLDIASQRYMAERVVSARLYQDERSGAWELDWRFTNEDQFEATRHKGDKQQVILDMVDALASALASEYAIDAASGYDAQQQMLKLYNTTSFVDIEYALRRLRSLSVVTDANVSHVAKKFIEINVSHTGSIDDLRKALTLDSYFSDYRDPDKFYYSTSNDDLEYAWQ
>NZ_CP023396.1|WP_151173711.1|1431541_1432228_-|DnaA-regulatory-inactivator-Hda
MALPVTLPDDETYASYFGGEDSLEVNHLKAAFEHLTQQFQYTYLCGLGDSGKSHLLYATCIHAQEQGLSSMLLSLSEVQQFGAQVLEGLDTLDVVCIDDLHLVAGDEVWEKALFNFFNRFNEPGKLLLISADLLPDMLNITLPDLESRLKWGTTLQIRSMSDDDKAQALTNRAKMRGLELSDDCARFLLTRLSRDMRALLDVLDTLDHASMAAQRKLTIPFIKATLKL
>NZ_CP023396.1|WP_022943600.1|1430467_1431448_-|phenylalanine--tRNA-ligase-subunit-alpha
MNLEAILADALKAVDSASEIAHLEDVRVNYLGKKGEITGLLKTLGKMAPEERKSAGQVINQAKQQVTEAINEKREALNAKALEQKLAAETIDVTLPGRNMASGGIHPVTRTIERIESFFGELGFAVKQGPEVEDDFHNFDALNIPAHHPARADHDTFYFNPKLVLRTQTSGVQIRTMETEQPPLRIISPGRVYRNDYDQTHTPMFHQVEGLMVDTDVSFTELKGILHDFLRNFFEEDMEIRFRPSYFPFTEPSAEVDVKGKDGKWLEVLGCGMVHPNVLRSVNIDPEKYTGFAFGMGVERLTMLRYGVNDLRAFFENDLKFLNQFR
>NZ_CP023396.1|WP_151172913.1|1428066_1430454_-|phenylalanine--tRNA-ligase-subunit-beta
MKFSEKWLREWVNPAIDSDALAEQLSMAGLEVDALEPAAGQFSGVVVGEVVECGQHPDADKLRVTKVNVGDDELLDIVCGAPNCRQGIKVAVAKVGAVLPGDFKIKKAKLRGQPSHGMLCAFVELGISEEGDGIMELPADAPIGTDLREYLSLDDHIIDVDLTPNRSDCLGIKGLAREVGVLNNLDVNELTIAPVEPTIDDKVSIELVNEQGCPRYLGRVIKGINLDAQTPLWMVEKLRRSGIRSIDPVVDVTNYVLIELGHPMHAFDLAAIEGGIKVRSANGGEELVLLDGNTAKLNESTLVIADHNKALAMAGIFGGEGSGVTEKTSDILLESAFFNPVAIAGQARSYGLHTDASHRYERGVDFALQRDAMERATALLLDIVGGQAGPVVEAVATEQLPKVTAVTLRRERLDRVIGYHIDDETVTNILRRLGLDVQFTNGTWQADVPSYRFDIRIEEDLIEEVARVYGYNNIPNVAPMAKLNMTAHNEASVPVKRLRDTLVTRGYQEAITYSFVDPKVQAAIHGDEQALHLPHPISADMSVMRLSLMPGLLNALVYNQNRQQSRVRLFEHGLKFIADEQAENGVRQQAVFGGIVSGTSYGEHWNVPSRAVDFYDVKGDVEALLALCNDSARFSFKAQQCDGLHPGQSAAIFVDGQQVGFVGAVHPQLQKQLGINGAAYVFEIEVAAVATRVLPEAVGISKFPSNRRDIAILVEDKVHAGDVLATIEKVGGNQLVDLNLFDVYKGKGIEPNYKSLAIALTLQAVDRTLEEKDINLVVDNVVAALAKEFNASLRD
>NZ_CP023396.1|WP_022943602.1|1427764_1428064_-|integration-host-factor-subunit-alpha
MALTKADIAEHLFEKLGINKKDAKELVEAFFEEIRSALENGEQIKLSGFGNFDLRDKKERPGRNPKTGEDIPISARRVVTFRPGQKLKTRVEVGTSKLK
>NZ_CP023396.1|WP_151172912.1|1426923_1427718_+|DUF2989-domain-containing-protein
MRLIIGLALVTTLSGCDSSLTVREVCEQTPAMCNDLNTDSHCRHERAEVIISRFHEYEKPTLERKYQLLKDFERYSQCVNLASKIEHIKLKEKTASRYKGYHTAQKEINRLLYETRGSNHPGLLYFHWSRNNDNSALQKLLSMQEDTKVKNSRDAQFYLASYYMKVDTEKTLDHLYRSLELNGAEQQPHPEVLTSLVNIFYQQEQYNLAYTFAVVAKQAGVENIDFAPLRARALDDGHDLERLDTLAQTTYEQIMSGQFRSPRS
>NZ_CP023396.1|WP_022943604.1|1425178_1426624_-|glyceraldehyde-3-phosphate-dehydrogenase
MTSSHEQEYLNSWQERQDYAESMQPIIGKLYRNRGIEIAVYGRPLVNASTIDIIKAHKTVAQFEDSKLRLRESYPVLEAISNMELSSGRIDIGKLAYSFLYKDAAKGRSLEEFLKDELAEITNPGEPKAPRDVVLYGFGRIGRLLARLLIEKSGPYADLRLRAIVVRGGKDGDLEKRASLLRRDSIHGPFNGSITVDNERNAIKANGSYIQVIYANSPSEVDYTAYGIEDALVVDNTGIWKDEAGLGQHLESKGASKVLLTAPAKGDIKNIVYGVNNQDIKPEDKIVCAASCTTNAITPTLKALNDKFGIKNGHVETVHSYTNDQNLIDNYHKAERRGRAAALNMVITSTGAAKAVSKALPELEGKLTGNAIRVPTPNVSMAILNLNLEKGTSVEELNAFLRETALHSELRDQIDYTASTEIVSTDLVGSRYAGVVDSQATIVDGERVVLYVWYDNEFGYSCQVVRCMQDMAEIAHPSLPR
>NZ_CP023396.1|WP_151172911.1|1423923_1425051_-|carboxypeptidase-family-protein
MNITSNFDSGNIKVIACESPLDIQLEINKDNQSAFFQWFHFRLETTPFVEHCLHINNLKESAYPEGWDDYQAVASYDRQTWFRVPTRYDNGTLIIDFEPECSQVFFAYFAPYSYERHLDLIYWAQSHAICDAENLGTTLDGRDMTMLRIGEPSADKKAIWITARQHPGETMAEWFVEGLLHKLLDDEDPHAAKLLSKAVFYIVPNMNPDGSVRGHLRTNAAGVNLNREWATPSMDQSPEVYLVLNKMREVGLDMYLDIHGDEALPYNFVAGGEGIPSYDARLEDLENTFKDALLTITPEFQDEFGYDKDAPGEANLTVASCAVGEEFKALAYTVEMPFKDNANLPDIDYGWSDRRSYQFGQDTLAAIIAVVDKLR
>NZ_CP023396.1|WP_151172910.1|1422127_1423795_-|amino-acid-carrier-protein
MDALGNFFDTLDSMLGGSVWFPYVLLGVGLFFTIYLKFPQVRYFKHAVRIVSGKYDKKSHQGDTTHFQALSTALSGTVGTGNIGGVALAISIGGPAALFWMWMTAFFGMTTKFVEVTLSHKYREKTEDGTMAGGPMYYMDKRLNMKWLAILFAIATVISSFGTGSLPQINNIAQGMEATFGFEPMATGVVLSILLALVILGGIKRIAAITSKIVPLMAAVYVIGALLVIFYNIENIGPSFASVFTEAFTGSAAAGGFLGASFAYAFNRGVNRGLFSNEAGQGSAPIAHASAKADEPVSEGMVSILEPFIDTIIICTLTGLVILSSGVWNEKFDTHFERSSMTVLQGNYSDQSDEDRTDLYNYLNGNGSDVAPYNGTINVINGKAINKDFTILHSRSVAEDLRFGITERHVYTGEVEVKDGQIVDDSISVMGKSLVHSAELTTKAFTRGFLGDNGKYIVSIGLLLFAFSTAIAWSYYGDRAMTYLLGSRSVMPYRVFYVAGFFWASFADTTLVWKLAAVAIVVMTLPNLFGIMLLRKEMKDSVKDYWQKLEKDKSN
>NZ_CP023396.1|WP_022943607.1|1421730_1422060_-|hypothetical-protein
MAIISCPQCQKSISDKHQSCPHCNIALEQMNEQDQRRLAARTKLQKQQGLMNQSFIALIFFLGGFLVLYWQQPEPGSWQQNACYGAIVLGFIWYLINRVRLVFLKRKKL
>NZ_CP023396.1|WP_045978058.1|1439548_1440961_+|alanine:cation-symporter-family-protein
MTEIANTISGLIWGHVLVYLLIAAGLFFTVRLGFIQFRDFGHTFKVMFNSRQGAQGGISSFQAFCTSLAARVGTGNMAGVGVALYLGGPGAIFWMWLIALIGMATSFAESTLAQAYKVKDEHGNFRGGPAYYMEKGLGKRWMGVAFSLCLILAFGLVFNAVQANSIAAAFNEAFAIPNYVVGIALVIGSGFVIFGGLKTIARFAELVVPFMALAYLVLALYVCAVNLEQLPQVFMVVINHAFGIEQAGAGAIGYGVMQAMIQGIKRGLFSNEAGMGSAANAAATATPNPPHPASQGYVQMLGVFIDTIVICSATAALILLSGQLAPGSGLTGIALTQNALVTHVGEWGAIFVAVAILFFAFTSIVANYSYAETNLLFLEHNHEKGMLIFRALVLAMVMFGSLGEIKLVWTLADISMGMMAIINVIALFMLSGVVIWLSKDYQQQRKQGVVPTFDKNKHPKLAQEVDPDSW
>NZ_CP023396.1|WP_151172914.1|1441006_1441555_-|hypothetical-protein
MAVIQVKRIFLLFPSIVLLCSCTAVKFNPRYEQQWHTVIVAPFSGDSSERTVSKRVDYQLSTLAGITVIPSYNVDMLLKQHDLQEQYEQHPREALFELAKKVNADGVIEGEVISNHANRSQAFHQVEITSRIVDTNNLAIVATSYEQNSALIGSLNELSMQSTDEIVAELKIALAKLGAQLP
>NZ_CP023396.1|WP_022944538.1|1442547_1443099_-|CDP-diacylglycerol--glycerol-3-phosphate-3-phosphatidyltransferase
MWNIPNTLTAFRLCLIPIFLFIFYLPSQWAFFAAAFVFWLASITDILDGYLARRLNQSTPFGAFLDPVADKVMVSAALVVLVGHYQSAWMTVPALIIIGREIVISALREWMAEQGKRGEVAVSQLGKVKTAAQMLAIIGLIWQFQPWMVTLSYILLYIATILTFGSMVQYLMAARHSFFAKEG
>NZ_CP023396.1|WP_022944539.1|1443150_1444971_-|excinuclease-ABC-subunit-UvrC
MSFAADQFLKTVSEEPGVYRMLDSEQQVIYVGKAKNLKKRLSSYFRKTGLDAKTQVLVRNIDDINVTLTNTETEALLLENNLIKKYQPRYNILLRDDKSYPYILLTKHQHPRLAFHRGARKIKGEYFGPFPSAGAVSESLRLMQKLFPVRQCEDSYYKARSRPCLQYQLKRCSAPCVGKVSDEEYSAQVDYVRKFLGGKSHEVISSLVAKMEHASEQLAFEKAAKYRDQIQLLRKVQEQQSVSGKHAELDALGYCRRNGMVAVHILMVRDHKVMGSKTLYPKVPKDSSDDEILTSFIAQYYCAPGATGRIAKELVLPFAIDEQQPLSNAMSELKSTQVKLNTVHRGERAQYLQLANKNADSSLEVQQSTQDAINKRYALLKEALHLDDIARMECFDISHTMGENTVASCVVFDRQGPNKSEYRRFNVTGITPGDDYAAMAFALNKRYGKLTDESKIPDVIFIDGGKGQLNQAVAFFSDWPFAKMPLLVGVAKGTSRKPGLETLLIDAGRKTVSLGSDSPALHLIQHIRDESHRFAIAGHRNKRQKQRNQSVLEEIGGVGQKRRQALLKYLGGMQGVKSATIEQLSQAPGISPAMAEKIFNHLHDKA
>NZ_CP023396.1|WP_022944540.1|1444979_1445630_-|UvrY/SirA/GacA-family-response-regulator-transcription-factor
MINVLLVDDHELVRTGIKRILDDVRGFKVIGEAKTGEEAVQFCRQNEPDIVLMDMNMPGIGGLEATKKICRYCPDVKVIVLTVHCEDPFPSKVMQIGAHGYLTKGAGPEEVVNAIRAVNSGQRYIAPQIAQQIALAQFSGRTDENPFQTLSDRELQIMLMITRGEKVQSIADRLNLSSKTVNSYRYRIFEKLAVNGDVELTHLAIRHKMIDIDSDH
>NZ_CP023396.1|WP_022944541.1|1445707_1446859_-|dicarboxylate/amino-acid:cation-symporter
MKLILKLVAGIVLGMLIGAFAPEAVARALYTAKVLIGELIGFTIPLIILFFICSGIAGLPKGANHLLGRTVGFAYGSTVVAGTLAIIVMTWAAPYISGSINFHGGEESALSSFIDIEIPPLMGVMSALVAAFAFGIGISQRQLTQLQQVVDQGKEVIDGLLSKVIIPALPFYIAGVFADMTVAGTVASTLQTFAVVLAIALVMHWVWLSVLYIGTGLLLGRSPWMLLKNMLPAYLTALGTMSSAATIPVSLKASKDNGVKEHIANFSVPLCATIHLSGSTITIVTCAMAVMALSPTMAIGSLTEMLPFVLMLGIVMIAAPGAPGGAVMSALGLLTSMLGFTDAAIALMIALYLAQDSFGTACNVTGDGIIALWVDRFSDKTSA
>NZ_CP023396.1|WP_151173713.1|1447112_1449428_+|carbohydrate-binding-family-9-domain-containing-protein
MAVTPFIVLAETAQPALNIPYLADAATIDGRLDEPQWQQAKRISVNNITWPYENKPSPVSTTALIYENDDTLYLGFIAEDPHPEKIRAFYRDRDSAWDDDLVGIKLDTYGSAKLAYQFFVNPLGVQQDSIENELSKTENSAWDGIWDSAGHITAQGYQVEIALPMRMFNFDDAPRSQAMTMELVRFYPRNERLRLSSMQLDHGNHCWICQMPQVNGFANAKQSSNLIVVPSLVLNQQQQRDINGAVLKPWQKDNNIEPSLDLKWGITPDLTLNATVNPDFSQVEADVAQLNVNESFSLFFPEKRSFFLDNADYFASNLNLIYTRNIASPGAGAKLTGSKNGHTVAAFISNDEQTNVLIPGNLGSRVVSLEQHSQAGALHYRYDISSAFSLGASSTFRRSDDYHNEVLSIDSKYRFDDFTTLVVQALASQSDYSEDFIEQLCDADEPCQAPPVQPCDSRYDCGYSEALLRVNERHYDGYGYYLSLDRDTKYYSLFGNYHMRSRGLRADLGFLSETDFNKFTTGGEYRWYAEQDAWWNRARWYADWDITHNQAGELIEKEAQSFVSLDGPWQSYLELGTISRERRGLRADPSSLAIDGNSARFNENEINLFASIKPSAGVVADIDVTQGNKVDLANNRLGEFVRIRPTVNYNINSHLALRLRHTYEDLQRRSGEDIFSANLSDLRLTYQFNLRSFLRLTMIYTDIEREPSSYVKEVDARYRALSTQLLYSYKLNPQSVVFVGYSDSGYQDDDLSQLEKDNRTLFAKFSYAWIL
>NZ_CP023396.1|WP_022944543.1|1449560_1450529_+|cysteine-synthase-A
MSKIYEDNSLSIGNTPLVKLNRVTGGNVYAKVEARNPSFSVKCRIGASMIWEAEKSGQLTKDKELIEPTSGNTGIALAFVAASRGYKLTLTMPNSMSLERRKLLKALGANLVLTEGPKGMKGAIEKAKEIHDSDPDKYILLQQFENPANPKIHFETTGPEIFDALDGKVDFFIAGVGTGGTITGVSRYLKQEKGLNVQSIAVEPTDSPVISQTMAGQEVKPGPHKIQGIGAGFIPGNLDLELLDGVEQVSNDDAIAMAHELMKNEGILAGISSGAAVVAAKRLAEKPENADKNFVVILPSSAERYLSSPLFAGEFSDQELEQ
>NZ_CP023396.1|WP_151172915.1|1450645_1451080_+|hypothetical-protein
MKRTLLLALILLLTACGQNDDDITGDPNSPGYVATQYFYALYNHDNLERATQYATPKLARIMRSYGTASQFTRNLVNLQYDQVTIELDRTEMSVRQQYGDHATINLVFTGHFHGNQVDDMRSVKMIRERGDWLVSEIVPDPYGR
>NZ_CP023396.1|WP_151173714.1|1451118_1453392_-|acyl-CoA-dehydrogenase
MWLVLLIIVAVIVIFAVRDIRMSIVTRPVFKWFKQALPPLSATERDAMEAGDIWWDGELFRGNPDWHQLHQYATSQLSAEEREFIDNQVVELCAMLDDETITAQQDMPESVWQYLKGEGFFALIIPKEHGGHDFSALANSTIVAKIASKSLSAAVTVMVPNSLGPAELLLHYGTLSQQQQWLPKLAKGEALPCFALTGPEAGSDAGAIPDTGVVCKGEFAGKEVLGLRLNWSKRYITLAPRATVLGLAFKMFDPDGLLGTTKNIGITCALIPTDHPGVRTGDRHKPMNMGFLNGTTEGKDVFIPLEWIIGGEVQAGNGWRMLVECLSAGRGISLPALSTATGHLSARTSGAYAALRQQFGVAIGEFEGIQEALARIGGLTYQLEAARVLTATAIDQKLSPSVITAIAKYHMTEMGRQVINDALDIHAGKGIQMGPNNYLAHCYMGTPVSITVEGANILTRNLMIFGQGAIRCHPYVIDEMVAAGLDDEEKGVREFDPLLCQHMLYSAGNGVMSFVHALTGSYFAKAPVGGATAKYYRYLGRFSRALAFCADIAMLRFGGDLKRREMLSARLGDVLSHLYLASAVLKRYQDEGHQHADLPFVQYSVERSLYLCTKAFDEFIYNLGSWPLSLAVRAVVLPLGNHFKMPKDEVAKQVAQHMTRSGVVRERLTHLCVVDDSNGTAVLDKALEAQQHAAQGYREVHKLRKKGEIQGLTMMQLIEDARAKNKLSAEQSEQLIAAESLRQEVIAVDVFAAQEFE

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Crispr_ID: NZ_CP023396_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP023396_3

2281203-2281350

Orphan

Consensus_repeat	Method
GCAAGGCTAAAAGCCTTGCCTACATCATTAATGGCTTGGTAAAGACCAACGT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP023396_3

>merge|NZ_CP023396|3|2281203-2281350|CRISPRCasFinder
GCAAGGCTAAAAGCCTTGCCTACATCATTAATGGCTTGGTAAAGACCAACGTGGGTCGGGCTTTAGCCTGACAATCGAAATCAACCTAACAGCTGCGCAAGGCTAAAAGCCTTGCCTACATCATTAATGGCTTGGTAAAGACCAACGT

>NZ_CP023396|3|3|2281203-2281350|CRISPRCasFinder
GCAAGGCTAAAAGCCTTGCCTACATCATTAATGGCTTGGTAAAGACCAACGT	GGGTCGGGCTTTAGCCTGACAATCGAAATCAACCTAACAGCTGC
GCAAGGCTAAAAGCCTTGCCTACATCATTAATGGCTTGGTAAAGACCAACGT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP023396.1\|WP_040643285.1\|2269463_2270672_+\|methyl-accepting-chemotaxis-protein	unknown	unknown	gnl\|CDD\|223910
NZ_CP023396.1\|WP_045980361.1\|2288003_2288879_-\|UTP--glucose-1-phosphate-uridylyltransferase-GalU	unknown	unknown	gnl\|CDD\|184021
NZ_CP023396.1\|WP_022946039.1\|2271973_2273080_-\|glutamate-5-kinase	unknown	unknown	gnl\|CDD\|184032
NZ_CP023396.1\|WP_045980365.1\|2294617_2296825_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP023396.1\|WP_045980364.1\|2290859_2292578_-\|sulfotransferase	unknown	unknown	gnl\|CDD\|379204
NZ_CP023396.1\|WP_045980355.1\|2273103_2274600_-\|sodium/proline-symporter-PutP	unknown	unknown	gnl\|CDD\|273981
NZ_CP023396.1\|WP_022946034.1\|2277694_2278369_-\|DNA-repair-protein-RadC	unknown	unknown	gnl\|CDD\|178801
NZ_CP023396.1\|WP_022946035.1\|2277234_2277471_-\|50S-ribosomal-protein-L28	unknown	unknown	gnl\|CDD\|234736
NZ_CP023396.1\|WP_151173245.1\|2286971_2287988_-\|UDP-glucose-4-epimerase-GalE	unknown	unknown	gnl\|CDD\|187558
NZ_CP023396.1\|WP_151173744.1\|2288963_2290082_-\|nucleotide-sugar-dehydrogenase	unknown	unknown	gnl\|CDD\|185017
NZ_CP023396.1\|WP_022946037.1\|2275171_2277025_+\|sodium:proton-antiporter	unknown	unknown	gnl\|CDD\|223104
NZ_CP023396.1\|WP_045980356.1\|2278474_2279662_+\|bifunctional-phosphopantothenoylcysteine-decarboxylase/phosphopantothenate--cysteine-ligase-CoaBC	unknown	unknown	gnl\|CDD\|235513
NZ_CP023396.1\|WP_045980363.1\|2290148_2290850_-\|SapC-family-protein	unknown	unknown	gnl\|CDD\|377801
NZ_CP023396.1\|WP_151173743.1\|2285069_2286428_+\|MBL-fold-metallo-hydrolase	unknown	unknown	gnl\|CDD\|224157
NZ_CP023396.1\|WP_151173242.1\|2270729_2271977_-\|glutamate-5-semialdehyde-dehydrogenase	unknown	unknown	gnl\|CDD\|234685
NZ_CP023396.1\|WP_045980358.1\|2282513_2283215_+\|16S-rRNA-pseudouridine(516)-synthase-RsuA	unknown	unknown	gnl\|CDD\|236774
NZ_CP023396.1\|WP_151173244.1\|2283342_2284974_+\|cache-domain-containing-protein	unknown	unknown	gnl\|CDD\|214599
NZ_CP023396.1\|WP_022946032.1\|2279756_2280344_+\|nucleoid-occlusion-factor-SlmA	unknown	unknown	gnl\|CDD\|181894
NZ_CP023396.1\|WP_022946036.1\|2277066_2277222_-\|50S-ribosomal-protein-L33	unknown	unknown	gnl\|CDD\|179075
NZ_CP023396.1\|WP_151173246.1\|2292567_2294514_-\|polysaccharide-biosynthesis-protein	unknown	unknown	gnl\|CDD\|224011

Protein	Function_ID	Function_description	E-value
NZ_CP023396.1\|WP_040643285.1\|2269463_2270672_+\|methyl-accepting-chemotaxis-protein	gnl\|CDD\|223910	COG0840, Tar, Methyl-accepting chemotaxis protein [Cell motility and secretion / Signal transduction mechanisms].	1.97131e-43
NZ_CP023396.1\|WP_045980361.1\|2288003_2288879_-\|UTP--glucose-1-phosphate-uridylyltransferase-GalU	gnl\|CDD\|184021	PRK13389, PRK13389, UTP--glucose-1-phosphate uridylyltransferase GalU.	2.30398e-163
NZ_CP023396.1\|WP_022946039.1\|2271973_2273080_-\|glutamate-5-kinase	gnl\|CDD\|184032	PRK13402, PRK13402, glutamate 5-kinase.	0
NZ_CP023396.1\|WP_045980364.1\|2290859_2292578_-\|sulfotransferase	gnl\|CDD\|379204	pfam13469, Sulfotransfer_3, Sulfotransferase family.	1.7085e-31
NZ_CP023396.1\|WP_045980355.1\|2273103_2274600_-\|sodium/proline-symporter-PutP	gnl\|CDD\|273981	TIGR02121, Osmoregulated_proline_transporter, sodium/proline symporter. This family consists of the sodium/proline symporter (proline permease) from a number of Gram-negative and Gram-positive bacteria and from the archaeal genus Methanosarcina. Using the related pantothenate permease as an outgroup, candidate sequences from Bifidobacterium longum and several from archaea are found to be outside the clade defined by known proline permeases. These sequences, scoring between 570 and -40, define the range between trusted and noise cutoff scores. [Transport and binding proteins, Amino acids, peptides and amines].	0
NZ_CP023396.1\|WP_022946034.1\|2277694_2278369_-\|DNA-repair-protein-RadC	gnl\|CDD\|178801	PRK00024, PRK00024, DNA repair protein RadC.	9.67019e-120
NZ_CP023396.1\|WP_022946035.1\|2277234_2277471_-\|50S-ribosomal-protein-L28	gnl\|CDD\|234736	PRK00359, rpmB, 50S ribosomal protein L28; Reviewed.	6.35892e-33
NZ_CP023396.1\|WP_151173245.1\|2286971_2287988_-\|UDP-glucose-4-epimerase-GalE	gnl\|CDD\|187558	cd05247, UDP_G4E_1_SDR_e, UDP-glucose 4 epimerase, subgroup 1, extended (e) SDRs. UDP-glucose 4 epimerase (aka UDP-galactose-4-epimerase), is a homodimeric extended SDR. It catalyzes the NAD-dependent conversion of UDP-galactose to UDP-glucose, the final step in Leloir galactose synthesis. This subgroup has the characteristic active site tetrad and NAD-binding motif of the extended SDRs. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif.	0
NZ_CP023396.1\|WP_151173744.1\|2288963_2290082_-\|nucleotide-sugar-dehydrogenase	gnl\|CDD\|185017	PRK15057, PRK15057, UDP-glucose 6-dehydrogenase; Provisional.	0
NZ_CP023396.1\|WP_022946037.1\|2275171_2277025_+\|sodium:proton-antiporter	gnl\|CDD\|223104	COG0025, NhaP, NhaP-type Na+/H+ and K+/H+ antiporters [Inorganic ion transport and metabolism].	5.48938e-65
NZ_CP023396.1\|WP_045980356.1\|2278474_2279662_+\|bifunctional-phosphopantothenoylcysteine-decarboxylase/phosphopantothenate--cysteine-ligase-CoaBC	gnl\|CDD\|235513	PRK05579, PRK05579, bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated.	0
NZ_CP023396.1\|WP_045980363.1\|2290148_2290850_-\|SapC-family-protein	gnl\|CDD\|377801	pfam07277, SapC, SapC. This family contains a number of bacterial SapC proteins approximately 250 residues long. In Campylobacter fetus, SapC forms part of a paracrystalline surface layer (S-layer) that confers serum resistance.	7.27077e-55
NZ_CP023396.1\|WP_151173743.1\|2285069_2286428_+\|MBL-fold-metallo-hydrolase	gnl\|CDD\|224157	COG1236, YSH1, Predicted exonuclease of the beta-lactamase fold involved in RNA processing [Translation, ribosomal structure and biogenesis].	5.4845e-94
NZ_CP023396.1\|WP_151173242.1\|2270729_2271977_-\|glutamate-5-semialdehyde-dehydrogenase	gnl\|CDD\|234685	PRK00197, proA, gamma-glutamyl phosphate reductase; Provisional.	0
NZ_CP023396.1\|WP_045980358.1\|2282513_2283215_+\|16S-rRNA-pseudouridine(516)-synthase-RsuA	gnl\|CDD\|236774	PRK10839, PRK10839, 16S rRNA pseudouridine(516) synthase RsuA.	1.14511e-97
NZ_CP023396.1\|WP_151173244.1\|2283342_2284974_+\|cache-domain-containing-protein	gnl\|CDD\|214599	smart00283, MA, Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Thought to undergo reversible methylation in response to attractants or repellants during bacterial chemotaxis.	7.96477e-50
NZ_CP023396.1\|WP_022946032.1\|2279756_2280344_+\|nucleoid-occlusion-factor-SlmA	gnl\|CDD\|181894	PRK09480, slmA, division inhibitor protein; Provisional.	2.55099e-116
NZ_CP023396.1\|WP_022946036.1\|2277066_2277222_-\|50S-ribosomal-protein-L33	gnl\|CDD\|179075	PRK00595, rpmG, 50S ribosomal protein L33; Validated.	3.45912e-21
NZ_CP023396.1\|WP_151173246.1\|2292567_2294514_-\|polysaccharide-biosynthesis-protein	gnl\|CDD\|224011	COG1086, COG1086, Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism].	0

>NZ_CP023396.1|WP_022946032.1|2279756_2280344_+|nucleoid-occlusion-factor-SlmA
MAASRRTNRKEQILQSLAQMLETSPGQRITTAKLAAEVGVSEAALYRHFPSKARMFEGLIEFIEDTLLSRINLILENEKETQSRVYNILMLLLAFAEKNPGITRILTGDALQGENERLRERIQSLFEKLETQFKQVLRERKLREGKAFASDEGTLANLFLAFVEGKMNQFVRSNFTIKPSGQFDKQWQELQKIWL
>NZ_CP023396.1|WP_045980356.1|2278474_2279662_+|bifunctional-phosphopantothenoylcysteine-decarboxylase/phosphopantothenate--cysteine-ligase-CoaBC
MQNKKVVLGISGGIAAYKCAELTRRLKERGCEVKVVMTDSAKHFITPLTMQAVSGEIVSDSLLDPQAEAAMGHIEFAKWADLILVAPATANIIAKMAAGIADDLLTTLLLATPAKVAIAPAMNQQMYAHAATQANLATLAQRDIAIWGPGAGEQACGDVGAGRMLEPNELVELVCTPTVQPLLAGKTLTITAGPTREALDPVRYISNHSSGKMGYALAAAGVAMGATVNLISGPVNLPTPVGVTRINVQSAQQMHQQALALAPSSDIFIGCAAVADYRAADIAEQKMKKQGDELTLTLVKNPDIIADVAALSENRPFTVGFAAETQDVATYAQGKLKNKKLDMICANDVSVQGQGFNSDNNALTLFSHDSTQSIALMKKDKLALTVIEAIATKLV
>NZ_CP023396.1|WP_022946034.1|2277694_2278369_-|DNA-repair-protein-RadC
MRLTDLPAQQRPREKLLTQGAGALSDAELLAIFFRTGIAGCNAIDLAQQILSQSQGLHTLLAAEHDHFCRFKGMGTAKYTQLQAAIELARRYLQTSLERALSFDSPQAVQDYLKLELKGLQREVFLVLFVDAQHRLISTETLFQGTIDAASVYPREVVKAALKHNAAAVIFAHNHPSGIAEPSQADEVITRKLIQALGLVDIRVLDHLVIGGCHAVSFAERGLL
>NZ_CP023396.1|WP_022946035.1|2277234_2277471_-|50S-ribosomal-protein-L28
MSKVCQVTGKRPVVGNHRSHARNATKRRFLPNLQTHRFWVESEKRFVSLRTTTKGMRIIDKKGIDAVLTDIRARGEKV
>NZ_CP023396.1|WP_022946036.1|2277066_2277222_-|50S-ribosomal-protein-L33
MRDKIRLVSTAGTGFFYTTDKNKRNMPEKMEIKKYDPKARKHVIFKEAKIK
>NZ_CP023396.1|WP_022946037.1|2275171_2277025_+|sodium:proton-antiporter
MSAIYIAGIALCSVIAQWLAWAFRVPAILFLLLTGLLLGPTTSLLEPDELLGDLLFPVVSLSVAIILFEGALTLHFRELKGIGKVVRNLCSIGMLITCLVVSLSAYWLLELDWRVAAVLGAVLVVTGPTVIAPLLNAMRPTQDIDRVLRWEGIVIDPIGALFAVLVFEAVMLVGQSDVFSHTLGALVTTLSVGFSLGAAAGWLTTQLIRREWLPYELHKFGILALVLISFTVSNHLSHESGLLAVTVFGIWLANQDDLEIDSVLEFKEDLSMILISSLFILLAARLKLEDLLALDAQVFIFLAIVLFVARPLNILISTYGSDLPVKSRLILAWIAPRGIVAAAVGSVFALSMADAGIVDANKMVPLIFTVIIVTVVLNSLTAIPLAKMLGVRQPAPSTLLIIGANHVARAIACGLKEQDIDVHLSDPAWENCKMARMDGLPCYYGNPQSEHAERYLPLTSISKVLALSPNRHHNALGVQYFSHLFSENRVFSLKSSQNHAKANKDSATFLSRQILFGENGSYAKLSSLIAKGGKVSATRLSDEFDWQQYQEVNSEAIPLFIIGNEKVVRIITAQMENPPASGEKVVALQPPKMSMVKDAQQNPPTKNPQLQPTKNPT
>NZ_CP023396.1|WP_045980355.1|2273103_2274600_-|sodium/proline-symporter-PutP
MHFYTYLSLALYFLAMLGIGLFAYRNSTSDISGYILGGRQVSPHVTALSAGASDMSGWMLMGLPGAMFLTGFDTVWIALGLVLGALANYLLVAPRLRVYTEMADDALTLPDFFDKRFNMSKGPIRVISAAVIILFFTLYTSAGLVAGGKLFESAFGLSYHLGLIITVSVVVAYTLLGGFLAVSMTDFVQGCIMFVALILVPIVAYMQFNGSADMLNFAQQSIPSFSESWQSITLLGIVSSLAWGLGYFGQPHIIVRFMAIRSVKDIKTARNIGMSWMTVTILGSLGTGLVGVAYANKFGLQVADPETIFVIFSEILFHPLISGFLLAAILAAIMSTISSQLLVSSSSLTEDVYRAFSKTEVEQKTLVKIGRIGVFAVALVATLLALDKSNSILSLVSNAWAGFGAAFGPLVLFSLCWSKITHQGALAGIVVGAATVLFWIFAPVLSDGGTLSSVIYEIVPGFIASSLAIVVVSKLSQAPSAEVKETFHATEQKLEQLS
>NZ_CP023396.1|WP_022946039.1|2271973_2273080_-|glutamate-5-kinase
MQNFKWQRIVLKVGSALIAPEQNGCSSRYLLTIAQFIVRCRAQGIEVILVSSGSVAAGSHLFPEDKPRSVALKKAMAAAGQMEMMATWDRFFDFPSAQILLTHGDLRDRERYTSVRDTIFTLLDHGVLPVINENDTVTTDDLKVGDNDNLSAMVAAAADADALMIFSDVDGLYDKNPNLHTDAVLLPEISEIDESIYAMAGCATSAVGTGGMKTKIEAAEKATSHGITTFILNGFKEQTFNLLLEGKNPGTIFLPYEKPMQEAVHWRTHTASEQGEVIVEGDFSEPLDENAEQINPQGIIEVRGEFSVGDTILVRSDDGTKLAKARANYSSCLLNFIAENETSEFSDEAQDSIGPIISDEDIAVLEKS
>NZ_CP023396.1|WP_151173242.1|2270729_2271977_-|glutamate-5-semialdehyde-dehydrogenase
MSLVKDISAQAAKAAKVLALLDTESKNNVLKEMAEALRANKEHIKAENESDLANARDNNLAAAMVDRLTLTDERIEDMAVGIETIADLDDPVGQLRSLGERPNGIKINKMRVPLGVICMIYEARPNVTADAGALCFKSGNAVILRGGKEALASSKAIASVLHSVLEKHNLPTALISVIPDPDRGLLMDLMQQRDTIDLIIPRGGEGLINFVTENSTVPVIQHFKGVCHLYVDKDADLDVAMNLLLNGKTQRTGVCNALEGLVVHQKVAEAFLARAAKELEAKGVRVNADAQAAKFFSNANVIGDDEFGEEYLDLEIAVRIVADFDAAVAHIDRFGSFHTEVICTKDEQTANLFQRSVDASVVMVNASSRFSDGSQLGLGAEIGIATTKLHAYGPMGLESLTTEKYLVNGEGQIRS
>NZ_CP023396.1|WP_040643285.1|2269463_2270672_+|methyl-accepting-chemotaxis-protein
MRMYNYIEETFFYTLTRKIVGNLSFLFALQLLTLVWLYRELSAQEQGLALFAVISLLVVGGFIFTVFYMRHLIVRPVQAMRDTLEQINQQDANLNARLPQFTYDEFRDLSEQYNKFVHHLSALLNTTYEGAAQAADSNQQVNLSMQNTAELGARQLQFSSEIAASTTQVTHSLEQIVANTDAVFSDNSENLTFVRTSSEELSQLVSQIHKITQLLGRFADTVAGLKENSENIRSILQMVEGFADQTNLLALNAAIEAARAGEAGRGFAVVADEVRSLSLKVSDATQQISDFINKMGTLVSDTNQESEQLIEHSSSAEQAIGNTASGFSELVQDFEKNQQQLQDIVAAVHELEQTQANTQQSVEQIKTLGEDAKAQIDQAAEQCARSEHLTRTTQSELERFVK
>NZ_CP023396.1|WP_045980358.1|2282513_2283215_+|16S-rRNA-pseudouridine(516)-synthase-RsuA
MKFPCRLDKFISHVTQLPRTKTKAVIKAKRVCVGGEMTTQQNTAIDENTVVTLDGEQLHYLGKRYFMLNKPEGYVCANSDDLHATVLDLMDEPNLQELHVAGRLDIDTTGLVLLSNDGQWTHQITSPKKQKYKTYVVELGQPISEHAAHELEQGVQLHGERELTRPAKVEVLAPYQIRLHIVEGKYHQVKRMLAAVGNEVVALHREAIAGVILDNALAPGEYRALSEDEVNLC
>NZ_CP023396.1|WP_151173244.1|2283342_2284974_+|cache-domain-containing-protein
MFATFSLRSKIIAFAVTLFIALIAVALLGLQALRHASENDNIARINQLMKSTVNVVEELENLAAQGELSDAQAQAYASTILQNNTYHDSEYVYVVSSDLNFVAAPHDPQLHGTSFNDFKDAQGNSIGAMVERLVGSKTGKIITYHWTSERDGEVVDLTSVVQKTPRWGWYIGTGISYKEVDQRYWSTASWLLGLSLIIAVLLTLALAKFGLALTNALGAELSSVKDIVTQVSRGRLNNTIAYQEHNKDSIIGSMAYMQQGLQGVVTGIKEVADTLQQQSMDSDKRSVELERLTQSLQQDTAIVASAITQLTASAQSVVDLAEQSAYAVGEAEQQGQAANALTEEAVDTISLLEQQIDSAGNNIQLLDDEVNNIANVLGVIQGIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRQLAQRTQSSTEEIHSMITNLQSATSEAKQSVQMSIETSEQTVSKSQRVRTELVHIAQSLSTLAGMSQEIASAAREQLGAGEDTANRVVVISDTATNTAQVSKQAHVASESMRALTEQLEQQTQKFET
>NZ_CP023396.1|WP_151173743.1|2285069_2286428_+|MBL-fold-metallo-hydrolase
MQIRHHGAVNGVTGSCHELQVSKAQSVLVDCGLFQGAEAKPSLAIDFDISAVTAVIITHCHIDHVGRLPYLLAAGFTGPIYASQATSALLPLVIEDALKLGVTQEQELVATCIRLLKRQLVSVDFKHWYDLPNTDCRFRLQRAGHILGSAYVEIDLPHNETRHRVVFSGDLGAPYTPLLPAPKAPYKADTLVIESTYGDSLHHGRKQRTQQLKAVIERAVSDNGVVLIPAFSIGRTQELLYELEQIIHSAKKHSFWQDIEVIIDSPMAANFTREYRRFKSLWDKEAKARVAKGRHPLDFNNIVTIDTHQQHVQLLQYLKQRQKPAIVIAASGMCSGGRIVNYLVEFLPEPTTDVIFVGYQGAGTPGRAIQKYGPRGGYVELNEQRIDINAHIHTISGYSAHADQAGLIRFVTGMRKKPQHIKIVHGDNEAKQALAEQLRSKLAQQTKVEIAT
>NZ_CP023396.1|WP_151173245.1|2286971_2287988_-|UDP-glucose-4-epimerase-GalE
MAILVTGGAGYIGSHTVLELLNQGSEVVVFDNLSNASRESLRRVEVLADKPVTFVKGDVCDKGALDSVFKNHDIDSVVHFAGLKAVGESVAKPTLYYQNNVQGSLTLISAMRDAGVFSLVFSSSATVYGDPETLPIKESAPVGGTTNPYGTSKLMVEQIMQDVAQSDERWRFAILRYFNPVGAHHSGQIGEDPNGIPNNLLPYISQVAVGKLKQLAVFGDDYNTKDGTGVRDYIHVVDLAIGHLKALDWLSLHSGVHIYNLGTGNGYSVLEMVKAFEQAADKAVPYEIAPRRDGDIAACYASAQKAADELGWHAQRGIEQMMQDTWRWQSKNPDGYQD
>NZ_CP023396.1|WP_045980361.1|2288003_2288879_-|UTP--glucose-1-phosphate-uridylyltransferase-GalU
MKAVIPVAGLGTRMLPATKAIPKEMLPLVDKPLIQYVVNECVRAGIKEIILVTHSSKNSVENHFDTSFELEVTLEKRVKRQLLEEVRSICPDDVTIIGVRQGEAKGLGHAIMCAEPVVGDAPFAVILPDVILDEYSADQTSENLAAMIARFKDTQTSQIMLEAVAQQDVSKYGIADINGEQIEPGQSAVIKSMVEKPKVEDAPSNLAVVGRYVLSHNIWPLLRKTPIGAGGEIQLTDAIDMLIAQEAVEAFRMSGISHDCGDKLGYLKAFVRYAQQHPELGADFSEHLKSI
>NZ_CP023396.1|WP_151173744.1|2288963_2290082_-|nucleotide-sugar-dehydrogenase
MLLAKHNEVVALDIDQGRVEALNKGVSPIVDADIDAYLGDANIRFHATTDKQAAYADAHFVLIATPTDYDPQTNYFDTSSVESVLADVQLYAANAVVVIKSTVPVGYTQSVAEQFPGLHVIFSPEFLREGKALHDNLYPSRVIVGERSQTAQSFADLLVEGAKKQDIQVLLTDSTEAEAIKLFSNTYLAMRVAYFNELDTYAETHGLNTRQIIEGVGLDPRIGDHYNNPSFGYGGYCLPKDTKQLLANYQDVPNNLISAIVEANRTRKDFITESILAKKPSVVGLYRLVMKAGSDNFRASAIQGVMKRIKAKGVEVIIFEPTLEEDSFFNSQVFKDEEHFKAHADVIVANRMFASLNDVTDKVYTRDIFGTD
>NZ_CP023396.1|WP_045980363.1|2290148_2290850_-|SapC-family-protein
MARQFQGLNAQTHKNLRIKKDLPLNSLEKQQAVPVVLSEMPKLAAEFPLVFLRQSNGELAPFALFSLEPQRNNFVEQGKWLAKRTPLALFNQPLILSQTKGNDYIVAVDMQSELIANAEDESTVAMFNDDGSETEALKGRKQHLVHFTQQQHQTREFTKLLVEYELIEPRQLVVESQGEKKELQSFFVLNQKKLEGLSQRKYIELKKLGVLYHCYAMIMSLEHLPSLLENQSA
>NZ_CP023396.1|WP_045980364.1|2290859_2292578_-|sulfotransferase
MSIKQQKLDKLWQTAQSAFNSSNYKAAISALQKIQRSNAGLSRQGLYLLAECRFQLLDFSKAWALLENLTAKYTNLTPIELNLKGRTSFKLGDSALASEYFVQATQAGNDSYADASRIAAAELFNKLGDFQRSVDVLLPLLSKSDFYLHTCNLLIEAYSKQGHKQDAHALVEQLTQRYLLEGSIEQALHAALMLIDAGYYEQARKLLEKSKHEPNILNEVAEVLLLAHNGEYQKCVTKYEAIRSGDHKAINYDLARVYDKLGNYEESFQLVQRAAQLHLKERTLTPLNRQAVKKLLTKVLDRRESGEKDNTESPVFMGGFPRSGTTLLETALDTQKQLYIFSEADTMAPVIAAMYSQYGYTYPQDLAKLDDEKIDFLRGVYLSYAKRYFNNDDVKLGQIVDKSPYHTIALPLILTLFPNARVITPIRHPFDVLLSCFKQNFSSHAFNDLLLTLDSATELYKTTFEMWLYFKERVGENFLEIKYEDIVQDFDNQMQQVFDFIGIEADDSYKEFDKFAREKKHVTSASKGQVTQKLYKGSINTWHNYADKLLPYAPQLESIAAHYGYSLSFDDK
>NZ_CP023396.1|WP_151173246.1|2292567_2294514_-|polysaccharide-biosynthesis-protein
MDFEANQITVMSFLEPLLGAHQSHKRLFTLAVDLSFIVAAFWGAVALISPITTALATPANWVVLAAVSLTSLAIFIRIGLYRAVLRYISSRAVGVVLSASLASTLSLYVFSHILPSTITWPSVLIYACYLLLGVGGSRVFIRALISAKQLQGVEPVIIYGAGSAGRQVATGLINSGEYHAAAFIDDDASLQGQMIMGINVYRRDQLPELIKSKGATKLLLAVPSATRAKRKQILSGLEPLSIKVLTIPCIADIVAGKHRIDELNEVDVADLLGRDAVDPVPELMQANIRDKVVLVTGAGGSIGAELCRQIIAQQPTQLILFEASEFNLYSIDKELNGIKKAQNLNCTITPVLGSVQNAERIGSVLHHFNVQTLYHAAAYKHVPLVEYNTIEGVENNVFGTLNTAQAAITHKVETFVLISTDKAVRPTNTMGASKRMSEMILQALAKHQKGTRFCMVRFGNVLGSSGSVVPLFRKQIASGGPITLTHYDITRYFMTIPEAAQLVIQAGAMGQGGDVFVLDMGEPVKIKDLATKMVHLSGLEVRDDANPYGDIEIQCTGLRPGEKLYEELLIGDNVQGTTHERIMTAQEQFLPYSQLRVTLEQLRLACNQFDCEQVRAILLAAPLEYQPQSNLVDLLWTSSKKYESNYVN
>NZ_CP023396.1|WP_045980365.1|2294617_2296825_-|hypothetical-protein
MKFNKALLSLAVAGALATPLAANAAAKIVVNDAKVGLPADTAAPASITYPVALNASNVSYGIKPNSYIASDDVSVDQVYVLDDGNSVVGQRAITFKGDMPASGRKSVSIAYSSDVQLPDEGTLRFQLSGPAGGFSPATANSLVVLAQVVDTAGFAPIAATATVGAATVGTIAYGTAVATLNTKADGSGLALPSNTDLAAAFTGASTGHFVEVGQSFDYADEDTDGDVDYVTIQLDTVSAPVAAGTNLNLALDGYEPVYAGATGVEWIQIDDGADNTAGTADDVWRASYVSAPATPIVDTNGAPVGAYSNDVGVLEEGEALPRRTQLYLAKPTTADYAPVDFVVTEGSKIGDKIDISIPEAKNTAGVDITAALADATTAVTITSGLMVDVDHATSQIDVEAEAGSRLQFVDEAVDTDLEASIAGFDLENGADYGITLNAGDSWNLTLKRKDGENSEAVESITFNGVALTDNGDGSWTTGDVEFLNAADPLLSGANLVINVDGETILYPNVEDAVDWMAELTVTDDGADGSEVTSGTYNVPVGDNADGKTHTWTINGLQAKIPYLYNINADDWSSVVKIVNESANEANVSAKVILGELGNKASAVLESGDYQTAVDAATGRLEGGYTFDIESLGHVPAEGHLTFDGKHIIESLGLDAATNYHIEIELLVEAAQNKVHVAAQNKNPNGRADSPVLYFINQTQETECRKFSTETDGGVANVNDVVTTCGTYTIDGRQWQ

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

798020 : 805357

Synechococcus_phage(16.67%)

tRNA

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_022945149.1\|798020_798680_-	phosphoribosylglycinamide formyltransferase	M4QRX9	Synechococcus_phage	3.5e-28	42.2
WP_022945148.1\|798679_799732_-	phosphoribosylformylglycinamidine cyclo-ligase	Q58MH8	Prochlorococcus_phage	7.0e-79	48.0
WP_151172566.1\|799830_800799_-\|tRNA	tRNA 5-methoxyuridine(34)/uridine 5-oxyacetic acid(34) synthase CmoB	A0A1X9I6N4	Streptococcus_phage	1.6e-05	26.3
WP_151172567.1\|800810_801536_-	carboxy-S-adenosyl-L-methionine synthase CmoA	S5VMD2	Pseudomonas_phage	9.6e-19	25.6
WP_022945145.1\|801759_802449_+	DUF3334 family protein	NA	NA	NA	NA
WP_151173693.1\|802534_803392_-	DUF72 domain-containing protein	Q859D1	Escherichia_coli_phage	1.6e-28	50.0
WP_045978441.1\|803578_805357_+\|tRNA	aspartate--tRNA ligase	A0A1V0SFI4	Hokovirus	8.4e-08	25.0

DBSCAN-SWA_2

1863268 : 1871814

Staphylococcus_phage(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_022943553.1\|1863268_1863733_-	6,7-dimethyl-8-ribityllumazine synthase	A0A2H4PQS3	Staphylococcus_phage	3.5e-30	48.0
WP_138509829.1\|1863832_1864939_-	3,4-dihydroxy-2-butanone-4-phosphate synthase	M4QPK3	Synechococcus_phage	7.7e-36	35.6
WP_022943555.1\|1864956_1865613_-	riboflavin synthase	A0A2I2L4R9	Orpheovirus	2.0e-23	34.5
WP_151173090.1\|1865615_1866749_-	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	A0A1V0SE20	Indivirus	4.2e-45	33.7
WP_026111229.1\|1866750_1867200_-	transcriptional regulator NrdR	NA	NA	NA	NA
WP_022945772.1\|1867292_1868549_-	serine hydroxymethyltransferase	A0A219Y950	Aeromonas_phage	2.0e-96	51.7
WP_151173730.1\|1868742_1871814_-	error-prone DNA polymerase	A0A0K1Y9G6	Streptomyces_phage	4.0e-66	24.1

DBSCAN-SWA_3

2747022 : 2849117

113

Pseudoalteromonas_phage(24.32%)

terminase,integrase,plate,head,tRNA,capsid,portal,tail,protease

attL 2757460:2757478|attR 2795546:2795564

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_022945417.1\|2747022_2748147_-\|tRNA	tRNA guanosine(34) transglycosylase Tgt	A0A1B1IVQ4	uncultured_Mediterranean_phage	1.7e-94	49.6
WP_138547039.1\|2748305_2749346_-\|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	NA	NA	NA	NA
WP_151173429.1\|2749489_2751991_+	EAL domain-containing protein	A0A127AWB9	Bacillus_phage	4.3e-18	34.1
WP_053909813.1\|2752234_2752438_+	hypothetical protein	NA	NA	NA	NA
WP_022945413.1\|2752451_2753372_-	hydrogen peroxide-inducible genes activator	NA	NA	NA	NA
WP_151173430.1\|2753479_2754748_-	inorganic phosphate transporter	E5ESL8	Bathycoccus_sp._RCC1105_virus	1.2e-61	35.5
WP_022945411.1\|2754823_2755501_-	TIGR00153 family protein	NA	NA	NA	NA
WP_022945410.1\|2755771_2756473_-	phosphate signaling complex protein PhoU	NA	NA	NA	NA
WP_022945409.1\|2756536_2757361_-	phosphate ABC transporter ATP-binding protein	A0A1V0SE00	Indivirus	6.0e-17	29.1
WP_151173431.1\|2757390_2759040_-	phosphate ABC transporter permease PstA	NA	NA	NA	NA
2757460:2757478	attL	NA	NA	NA	NA
WP_151173432.1\|2759056_2761288_-	ABC transporter permease subunit	NA	NA	NA	NA
WP_151173433.1\|2761619_2762120_+	glycine cleavage system protein R	NA	NA	NA	NA
WP_138547036.1\|2762231_2764307_+	polyphosphate kinase 1	NA	NA	NA	NA
WP_151173755.1\|2764353_2765784_+	exopolyphosphatase	NA	NA	NA	NA
WP_026111172.1\|2765769_2766225_-	hypothetical protein	NA	NA	NA	NA
WP_053909820.1\|2766334_2767057_-	glutaredoxin	A0A248SKD6	Salicola_phage	2.1e-05	40.0
WP_151173434.1\|2767053_2770173_-	CusA/CzcA family heavy metal efflux RND transporter	NA	NA	NA	NA
WP_151173435.1\|2770169_2771627_-	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA
WP_151173436.1\|2771692_2772043_-	hypothetical protein	NA	NA	NA	NA
WP_045979217.1\|2772066_2772693_-	paraquat-inducible protein A	NA	NA	NA	NA
WP_045979216.1\|2772737_2774000_-	HDOD domain-containing protein	NA	NA	NA	NA
WP_151173437.1\|2774183_2774882_+	transporter substrate-binding domain-containing protein	NA	NA	NA	NA
WP_022945395.1\|2774945_2775512_+	PhnA domain-containing protein	NA	NA	NA	NA
WP_151173438.1\|2775603_2776392_+	META domain-containing protein	NA	NA	NA	NA
WP_151173439.1\|2776462_2778655_-	EAL domain-containing protein	NA	NA	NA	NA
WP_170268948.1\|2778797_2779337_+	hypothetical protein	NA	NA	NA	NA
WP_022945391.1\|2779326_2780205_+	TIGR03899 family protein	NA	NA	NA	NA
WP_138508143.1\|2780248_2781007_-	TIGR04219 family outer membrane beta-barrel protein	NA	NA	NA	NA
WP_022945389.1\|2781019_2782006_-	DUF2333 family protein	NA	NA	NA	NA
WP_138547028.1\|2782014_2782500_-	copper chaperone PCu(A)C	NA	NA	NA	NA
WP_022945387.1\|2782632_2782839_-	PspC domain-containing protein	NA	NA	NA	NA
WP_151173441.1\|2782983_2783991_-\|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	NA	NA	NA	NA
WP_151173442.1\|2784098_2785166_+\|integrase	tyrosine-type recombinase/integrase	A0A1L5C291	Pseudoalteromonas_phage	2.9e-149	89.0
WP_151173443.1\|2785492_2785783_+	hypothetical protein	NA	NA	NA	NA
WP_170268950.1\|2785902_2786523_+	DUF4145 domain-containing protein	M1PSB6	Streptococcus_phage	1.1e-34	36.5
WP_151173444.1\|2786659_2787079_+	hypothetical protein	NA	NA	NA	NA
WP_151173445.1\|2787237_2788188_-	hypothetical protein	NA	NA	NA	NA
WP_151173446.1\|2788160_2788853_-	hypothetical protein	NA	NA	NA	NA
WP_022945381.1\|2788854_2789337_-	hypothetical protein	A5X9J7	Aeromonas_virus	7.3e-15	32.2
WP_151173447.1\|2789333_2790041_-	hypothetical protein	NA	NA	NA	NA
WP_138507993.1\|2790015_2790357_-	DUF1353 domain-containing protein	NA	NA	NA	NA
WP_151173448.1\|2790356_2790860_-	hypothetical protein	NA	NA	NA	NA
WP_151173449.1\|2790859_2791693_-	hypothetical protein	NA	NA	NA	NA
WP_151173450.1\|2791695_2792493_-\|tail	phage tail protein	NA	NA	NA	NA
WP_151173451.1\|2792489_2793011_-\|tail	phage tail protein	A0A0U4JVX3	Pseudomonas_phage	5.4e-32	45.0
WP_151173452.1\|2793007_2794156_-\|plate	baseplate J/gp47 family protein	A0A0U4JJ14	Pseudomonas_phage	8.8e-75	40.5
WP_022945373.1\|2794145_2794478_-	DUF2590 family protein	A5X9J0	Aeromonas_virus	3.8e-15	43.1
WP_151173453.1\|2794474_2796787_-\|tail	phage tail tape measure protein	R9TRA2	Vibrio_phage	7.6e-102	45.2
2795546:2795564	attR	NA	NA	NA	NA
WP_151173454.1\|2796962_2797259_-	hypothetical protein	A0A0U4B0P2	Pseudomonas_phage	4.3e-10	39.5
WP_151173455.1\|2797255_2797846_-	hypothetical protein	NA	NA	NA	NA
WP_022944376.1\|2797842_2798298_-	DUF2597 family protein	A0A1L5C2D0	Pseudoalteromonas_phage	1.5e-38	51.7
WP_151173456.1\|2798306_2799425_-	DUF2586 family protein	A0A0U4KLE6	Pseudomonas_phage	2.0e-79	44.1
WP_151173457.1\|2799437_2800076_-	phage virion morphogenesis protein	A0A1L5C2C4	Pseudoalteromonas_phage	6.0e-25	38.4
WP_138508006.1\|2800056_2800500_-\|tail	phage tail protein	NA	NA	NA	NA
WP_151173458.1\|2800496_2800955_-\|head	head completion/stabilization protein	NA	NA	NA	NA
WP_151173459.1\|2801049_2801802_-\|terminase	terminase	NA	NA	NA	NA
WP_151173460.1\|2801878_2802916_-\|capsid	phage major capsid protein, P2 family	A0A0U4K5I9	Pseudomonas_phage	3.6e-75	47.2
WP_138508010.1\|2802947_2803877_-\|capsid	GPO family capsid scaffolding protein	A0A0M3LSA0	Mannheimia_phage	1.6e-21	37.7
WP_151173461.1\|2804081_2805851_+\|terminase	terminase	A0A0F7LCM8	Escherichia_phage	1.3e-122	41.8
WP_151173462.1\|2805850_2806912_+\|portal	phage portal protein	A0A1D9C9P9	Salinivibrio_phage	6.2e-59	40.4
WP_167539015.1\|2806995_2807241_+	hypothetical protein	NA	NA	NA	NA
WP_151173463.1\|2807240_2807693_+	hypothetical protein	NA	NA	NA	NA
WP_151173464.1\|2807666_2807918_-	hypothetical protein	A0A2I7RHR8	Vibrio_phage	1.2e-13	53.8
WP_151173465.1\|2808252_2808498_+	ogr/Delta-like zinc finger family protein	A0A1L5C2B5	Pseudoalteromonas_phage	1.0e-28	69.1
WP_170268952.1\|2808503_2808725_-	hypothetical protein	R9TMR5	Vibrio_phage	1.9e-18	62.9
WP_151173466.1\|2808749_2809430_-	DNA adenine methylase	A0A0M4S5U3	Salmonella_phage	2.0e-50	46.9
WP_151173467.1\|2809599_2811102_-	DNA cytosine methyltransferase	A0A1L5C2B8	Pseudoalteromonas_phage	2.4e-189	64.4
WP_151173468.1\|2811111_2811666_-	3'-5' exoribonuclease	K7PM77	Enterobacteria_phage	9.5e-51	54.9
WP_151173469.1\|2811677_2814164_-	replication endonuclease	A0A1L5C2A7	Pseudoalteromonas_phage	5.5e-191	42.7
WP_022944360.1\|2814167_2814428_-	hypothetical protein	NA	NA	NA	NA
WP_151173470.1\|2814437_2815034_-	SAM-dependent methyltransferase	A0A1L5C2A0	Pseudoalteromonas_phage	3.4e-54	54.9
WP_151173471.1\|2815042_2815441_-	hypothetical protein	A0A1L5C285	Pseudoalteromonas_phage	3.4e-18	42.2
WP_151173472.1\|2815424_2815619_-	hypothetical protein	NA	NA	NA	NA
WP_026111025.1\|2815636_2815891_-	pyocin activator PrtN family protein	A0A1L5C290	Pseudoalteromonas_phage	6.5e-31	76.2
WP_151173757.1\|2815913_2816141_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_151173473.1\|2816346_2816961_+	helix-turn-helix domain-containing protein	U5P0T5	Shigella_phage	8.9e-34	52.0
WP_170268954.1\|2817017_2817962_-	hypothetical protein	NA	NA	NA	NA
WP_151173475.1\|2818211_2818793_-	hypothetical protein	NA	NA	NA	NA
WP_151173476.1\|2818800_2819415_-	AHH domain-containing protein	NA	NA	NA	NA
WP_151173477.1\|2820017_2820209_+	hypothetical protein	NA	NA	NA	NA
WP_022944348.1\|2820628_2821570_-	substrate-binding domain-containing protein	NA	NA	NA	NA
WP_045979206.1\|2821729_2822302_-	manganese efflux pump	NA	NA	NA	NA
WP_151173478.1\|2822493_2823135_+	LysE family transporter	NA	NA	NA	NA
WP_022943884.1\|2823163_2823772_-	MarC family protein	NA	NA	NA	NA
WP_022943883.1\|2823887_2824322_+	transcriptional repressor	NA	NA	NA	NA
WP_022943882.1\|2824395_2824863_+	chemotaxis protein CheX	NA	NA	NA	NA
WP_151173479.1\|2824859_2825297_+	YjbQ family protein	NA	NA	NA	NA
WP_151173480.1\|2825678_2826215_+	hypothetical protein	NA	NA	NA	NA
WP_151173481.1\|2826227_2828783_-	protein kinase	G9L673	Escherichia_phage	6.0e-15	30.6
WP_151173482.1\|2828792_2829776_-	FHA domain-containing protein	NA	NA	NA	NA
WP_151173483.1\|2829887_2830973_-	alanine racemase	A0A0P0YM39	Yellowstone_lake_mimivirus	8.1e-30	29.4
WP_022945637.1\|2830978_2832358_-	replicative DNA helicase	O80281	Escherichia_phage	2.1e-179	69.9
WP_045979200.1\|2832487_2833441_-	DUF4097 family beta strand repeat protein	NA	NA	NA	NA
WP_022945635.1\|2833451_2833946_-	hypothetical protein	NA	NA	NA	NA
WP_151173484.1\|2833938_2834502_-	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA
WP_022945633.1\|2834696_2835164_+	hypothetical protein	NA	NA	NA	NA
WP_151173485.1\|2835207_2835567_+	membrane protein insertion efficiency factor YidD	NA	NA	NA	NA
WP_151173486.1\|2835660_2837406_-	hypothetical protein	NA	NA	NA	NA
WP_151173487.1\|2837402_2837927_-	prepilin-type N-terminal cleavage/methylation domain-containing protein	NA	NA	NA	NA
WP_022945629.1\|2837923_2838334_-	prepilin-type N-terminal cleavage/methylation domain-containing protein	NA	NA	NA	NA
WP_138508040.1\|2838324_2838789_-	type II transport protein GspH	NA	NA	NA	NA
WP_151173488.1\|2838793_2839219_-	prepilin-type N-terminal cleavage/methylation domain-containing protein	NA	NA	NA	NA
WP_022945626.1\|2839747_2840200_-	50S ribosomal protein L9	NA	NA	NA	NA
WP_022945625.1\|2840235_2840463_-	30S ribosomal protein S18	NA	NA	NA	NA
WP_022945624.1\|2840474_2840804_-	primosomal replication protein N	NA	NA	NA	NA
WP_022945623.1\|2840822_2841164_-	30S ribosomal protein S6	NA	NA	NA	NA
WP_022945622.1\|2841398_2842136_-	23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB	NA	NA	NA	NA
WP_151173489.1\|2842145_2844548_-	ribonuclease R	Q0GXV6	Lactococcus_phage	8.5e-72	35.2
WP_022945620.1\|2844625_2845249_-	sel1 repeat family protein	NA	NA	NA	NA
WP_022945619.1\|2845363_2846680_-	adenylosuccinate synthase	W5S5V7	Pithovirus	1.3e-69	36.3
WP_045979187.1\|2846794_2846989_-	DUF2065 domain-containing protein	NA	NA	NA	NA
WP_022945617.1\|2847057_2847936_-\|protease	protease modulator HflC	A0A2K9L3L2	Tupanvirus	9.9e-10	24.6
WP_022945616.1\|2847938_2849117_-\|protease	FtsH protease activity modulator HflK	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_CP023397

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NZ_CP023397_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP023397_1

198476-198568

Orphan

Consensus_repeat	Method
ATCAAGGGGTCAGAGTTGTTGAAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP023397_1

>merge|NZ_CP023397|1|198476-198568|CRISPRCasFinder
ATCAAGGGGTCAGAGTTGTTGAAACTTAAATCTCTCCCTTGAGGCTTTTGCCATCGCGGTAAACATTCAATCAAGGGGTCAGAGTTGTTGAAA

>NZ_CP023397|1|1|198476-198568|CRISPRCasFinder
ATCAAGGGGTCAGAGTTGTTGAAA	CTTAAATCTCTCCCTTGAGGCTTTTGCCATCGCGGTAAACATTCA
ATCAAGGGGTCAGAGTTGTTGAAA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP023397.1\|WP_022944785.1\|181406_181742_+\|cupredoxin-domain-containing-protein	unknown	unknown	gnl\|CDD\|379208
NZ_CP023397.1\|WP_151173873.1\|181738_182467_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|224295
NZ_CP023397.1\|WP_151173879.1\|198775_199498_+\|transposase	unknown	unknown	gnl\|CDD\|376616
NZ_CP023397.1\|WP_040643106.1\|206390_207257_+\|tetratricopeptide-repeat-protein	unknown	unknown	gnl\|CDD\|276809
NZ_CP023397.1\|WP_151173882.1\|200869_202201_+\|diguanylate-cyclase	unknown	unknown	gnl\|CDD\|226229
NZ_CP023397.1\|WP_151173884.1\|203042_203747_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|368927
NZ_CP023397.1\|WP_151173880.1\|199740_200310_-\|NAD(P)H-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|225158
NZ_CP023397.1\|WP_165381071.1\|205393_206092_-\|transporter-substrate-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|270422
NZ_CP023397.1\|WP_151173883.1\|202313_203033_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|368927
NZ_CP023397.1\|WP_151173874.1\|183241_184246_+\|alcohol-dehydrogenase-catalytic-domain-containing-protein	unknown	unknown	gnl\|CDD\|176186
NZ_CP023397.1\|WP_045980132.1\|182453_183143_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP023397.1\|WP_151173875.1\|184234_184987_-\|transporter-substrate-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|366132
NZ_CP023397.1\|WP_151173877.1\|188594_189296_+\|purine-nucleoside-phosphorylase	unknown	unknown	gnl\|CDD\|180275
NZ_CP023397.1\|WP_151173885.1\|204008_204686_-\|DUF533-domain-containing-protein	unknown	unknown	gnl\|CDD\|377342
NZ_CP023397.1\|WP_170268989.1\|189615_198207_+\|DUF4225-domain-containing-protein	unknown	unknown	gnl\|CDD\|377060
NZ_CP023397.1\|WP_151173881.1\|200373_200733_-\|MerR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|133397
NZ_CP023397.1\|WP_022944791.1\|186427_187057_-\|uridine-kinase	unknown	unknown	gnl\|CDD\|235492
NZ_CP023397.1\|WP_022944790.1\|185189_186413_-\|NupC/NupG-family-nucleoside-CNT-transporter	unknown	unknown	gnl\|CDD\|224883
NZ_CP023397.1\|WP_022944665.1\|204951_205341_+\|biopolymer-transporter-ExbD	unknown	unknown	gnl\|CDD\|376792
NZ_CP023397.1\|WP_151173876.1\|187358_188570_+\|phosphopentomutase	unknown	unknown	gnl\|CDD\|235430

Protein	Function_ID	Function_description	E-value
NZ_CP023397.1\|WP_022944785.1\|181406_181742_+\|cupredoxin-domain-containing-protein	gnl\|CDD\|379208	pfam13473, Cupredoxin_1, Cupredoxin-like domain. The cupredoxin-like fold consists of a beta-sandwich with 7 strands in 2 beta-sheets, which is arranged in a Greek-key beta-barrel.	1.03265e-34
NZ_CP023397.1\|WP_151173873.1\|181738_182467_+\|hypothetical-protein	gnl\|CDD\|224295	COG1377, FlhB, Flagellar biosynthesis pathway, component FlhB [Cell motility and secretion / Intracellular trafficking and secretion].	0.000523663
NZ_CP023397.1\|WP_151173879.1\|198775_199498_+\|transposase	gnl\|CDD\|376616	pfam01797, Y1_Tnp, Transposase IS200 like. Transposases are needed for efficient transposition of the insertion sequence or transposon DNA. This family includes transposases for IS200 from E. coli.	1.26459e-17
NZ_CP023397.1\|WP_040643106.1\|206390_207257_+\|tetratricopeptide-repeat-protein	gnl\|CDD\|276809	sd00006, TPR, Tetratricopeptide repeat. The Tetratricopeptide repeat (TPR) typically contains 34 amino acids and is found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans. It is present in a variety of proteins including those involved in chaperone, cell-cycle, transcription, and protein transport complexes. The number of TPR motifs varies among proteins. Those containing 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accommodate an alpha-helix of a target protein. It has been proposed that TPR proteins preferentially interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes.	1.64842e-10
NZ_CP023397.1\|WP_151173882.1\|200869_202201_+\|diguanylate-cyclase	gnl\|CDD\|226229	COG3706, PleD, Response regulator containing a CheY-like receiver domain and a GGDEF domain [Signal transduction mechanisms].	1.89588e-76
NZ_CP023397.1\|WP_151173884.1\|203042_203747_-\|hypothetical-protein	gnl\|CDD\|368927	pfam06468, Spond_N, Spondin_N. This conserved region is found at the in the N-terminal half of several Spondin proteins. Spondins are involved in patterning axonal growth trajectory through either inhibiting or promoting adhesion of embryonic nerve cells.	8.8958e-08
NZ_CP023397.1\|WP_151173880.1\|199740_200310_-\|NAD(P)H-dependent-oxidoreductase	gnl\|CDD\|225158	COG2249, MdaB, Putative NADPH-quinone reductase (modulator of drug activity B) [General function prediction only].	5.87944e-36
NZ_CP023397.1\|WP_151173883.1\|202313_203033_-\|hypothetical-protein	gnl\|CDD\|368927	pfam06468, Spond_N, Spondin_N. This conserved region is found at the in the N-terminal half of several Spondin proteins. Spondins are involved in patterning axonal growth trajectory through either inhibiting or promoting adhesion of embryonic nerve cells.	3.38439e-05
NZ_CP023397.1\|WP_151173874.1\|183241_184246_+\|alcohol-dehydrogenase-catalytic-domain-containing-protein	gnl\|CDD\|176186	cd05283, CAD1, Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines.	2.07368e-171
NZ_CP023397.1\|WP_170268989.1\|189615_198207_+\|DUF4225-domain-containing-protein	gnl\|CDD\|377060	pfam03534, SpvB, Salmonella virulence plasmid 65kDa B protein.	1.12604e-13
NZ_CP023397.1\|WP_151173875.1\|184234_184987_-\|transporter-substrate-binding-domain-containing-protein	gnl\|CDD\|366132	pfam00497, SBP_bac_3, Bacterial extracellular solute-binding proteins, family 3.	5.09276e-12
NZ_CP023397.1\|WP_151173877.1\|188594_189296_+\|purine-nucleoside-phosphorylase	gnl\|CDD\|180275	PRK05819, deoD, DeoD-type purine-nucleoside phosphorylase.	2.71939e-149
NZ_CP023397.1\|WP_151173885.1\|204008_204686_-\|DUF533-domain-containing-protein	gnl\|CDD\|377342	pfam04391, DUF533, Protein of unknown function (DUF533). Some family members may be secreted or integral membrane proteins.	6.73284e-53
NZ_CP023397.1\|WP_165381071.1\|205393_206092_-\|transporter-substrate-binding-domain-containing-protein	gnl\|CDD\|270422	cd13704, PBP2_HisK, The periplasmic sensor domain of histidine kinase receptors; the type 2 periplasmic binding fold protein. This subfamily includes the periplasmic sensor domain of the histidine kinase receptors (HisK) which are elements of the two-component signal transduction systems commonly found in bacteria and lower eukaryotes. Typically, the two-component system consists of a membrane-spanning histidine kinase sensor and a cytoplasmic response regulator. The two-component systems serve as a stimulus-response coupling mechanism to enable microorganisms to sense and respond to changes in environmental conditions. Extracellular stimuli such as small molecule ligands and ions are detected by the N-terminal periplasmic sensing domain of the sensor kinase receptor, which regulate the catalytic activity of the cytoplasmic kinase domain and promote ATP-dependent autophosphorylation of a conserved histidine residue. The phosphate is then transferred to a conserved aspartate in the response regulator through a phospho-transfer mechanism, and the activity of the response regulator is in turn regulated. The sensor domain belongs to the type 2 periplasmic-binding fold protein (PBP2) superfamily, whose members are involved in chemotaxis and uptake of nutrients and other small molecules from the extracellular space through their function as an initial high-affinity binding component. PBP2 typically comprises of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	1.67212e-14
NZ_CP023397.1\|WP_151173881.1\|200373_200733_-\|MerR-family-transcriptional-regulator	gnl\|CDD\|133397	cd04769, HTH_MerR2, Helix-Turn-Helix DNA binding domain of MerR2-like transcription regulators. Helix-turn-helix (HTH) transcription regulator MerR2 and related proteins. MerR2 in Bacillus cereus RC607 regulates resistance to organomercurials. The MerR family transcription regulators have been shown to mediate responses to stress including exposure to heavy metals, drugs, or oxygen radicals in eubacterial and some archaeal species. They regulate transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.	1.20662e-32
NZ_CP023397.1\|WP_022944791.1\|186427_187057_-\|uridine-kinase	gnl\|CDD\|235492	PRK05480, PRK05480, uridine/cytidine kinase; Provisional.	1.3443e-123
NZ_CP023397.1\|WP_022944790.1\|185189_186413_-\|NupC/NupG-family-nucleoside-CNT-transporter	gnl\|CDD\|224883	COG1972, NupC, Nucleoside permease [Nucleotide transport and metabolism].	0
NZ_CP023397.1\|WP_022944665.1\|204951_205341_+\|biopolymer-transporter-ExbD	gnl\|CDD\|376792	pfam02472, ExbD, Biopolymer transport protein ExbD/TolR. This group of proteins are membrane bound transport proteins essential for ferric ion uptake in bacteria. The Pfam family consists of ExbD, and TolR which are involved in TonB-dependent transport of various receptor bound substrates including colicins.	1.46804e-19
NZ_CP023397.1\|WP_151173876.1\|187358_188570_+\|phosphopentomutase	gnl\|CDD\|235430	PRK05362, PRK05362, phosphopentomutase; Provisional.	0

>NZ_CP023397.1|WP_170268989.1|189615_198207_+|DUF4225-domain-containing-protein
MFKPLLYAIFTFFVMNAAVAAPSNPSNVVATVSNGNDITISWQSVIGATYYVREARVGSGSWINPKEYTGTSVTFVNISPNDYQYRVKACGSQGCSSWTYSNKVSILREPSKPSTVTASVKNLNDVVISWSSVSAAAYYIREAKVGAGSWIHPKTYTTTSVTFNGLAANTYQYRVKACNDLACSNWTYSNKIQVAGSPPTPANVSASVYDVNNVRVSWSSVTGASHYIREAQIGSGAWINPEQYTGTSATLNIVTPNEYRYRVKSCNRLGCSAWRYSNTVTVDRIPTAPSTVAAAVKNLSEVDVSWSPSSHAQFYIREAQVGSDAWSNAKEYTATSATYDIVTPEQYRYRVQACNSYGCSGWTYSDRITVEGAPVVPENVSAEVQNNSDVLVSWSATARTQYYIREAQVGAGDWLNPKEYSGTSATFSIVTANQYRYRVKACNSFGCSAWGYSNTIDVDGTPEAPKSVVAEVQNLLDVKVSWLSSEHTQHYIREVNVGSEGWGNSKQYTELSATYNITTPNQYSYRVKACNSFGCSAWSYSNNVTVDGVPEAPSEVSAQVKNLTEVHLSWSPTAHALHYIREVQVDTNEWKNPTEHTFTATILNISTPGDFRYRVKACTTMGCSNWTYSETVIVDGVSINPGVEAFWEQSEATETPDDQPFSDVQEITAEAVGTIAGQAAVNGGAASYTIPIKLPPGRAGMQPNVSLNYSSRSGNGIAGVGWGLSAGSSITRCAATVAQDGINHTPNYTANDKLCLDGQRLVIVSGNYGNSGAIYKTELDTFVRVKQTGSLTDEASFVAEYKSGRTAYFGQETSSKVIHANKSSAYSWLISYEHDATENNYIHYEYSSYGQGEQLLNTIYYTGTGAEELGDRKVVFEYESAANLYKRYIAGGYYFSTKRLKSISTEYGDAQVSSWSLSYSASLGTSRSLLDSIEYCSHISGTEKCLPSTEFDWSSKPAVYKPELLATSDGTEIFGQGHFPEGFAEVTAFGDADGNGSRDWPRYFTNAEFDQVGVNPLQGTDCQFSSMLLSTTCLQGDFNNDGRTDRWSKENNILRIGYVSGEDTISLNWQDTGVELGHYTSANRSEGDTLLSAADYNGDGWVDVTVLRRISEEKRTLTVYKHTQNLQNPYTENESHELDSAIFNGYSIEPVGDMNGDGIPDFLKKKARSVYMDSASSELLLTSTAANGAIQLQSYDVLFGADINGQSSAYGYWVDVNADGLPDWLGWVDGEVGANLTVKLNQGNGTFTEAQDIGVSVPSRRIPLYNAADKQNEYVLRPKFSDAFRIMDIDGDGRSEVIMPNSILVEGCIILVGRRQREQRHGEFTVCGDSVYTSYFPNEDSNERVAIQTKFDYSLYQYQALKFSQDATGSVSAHFVDTDLVGTPSYSSVMDATGNGLPDLVYKYGCRYYASGEYRNHKFFCYMRGANGERIEGPELVDKNLITYSYPSGTAGGSSAVADHQVRKVYFNRNYGATEPASIEKSDYHPHDLLLSVTNGLDKKEQWHYRPLSSDVVDGLYNNPKHNELNDTEHFYFSSSMYVVHTFTQSDGIGGNQHYTYQYRDAMFNNQGRGFMGFKSVIEKDLDRGLVTQTDFKQVFPLQGKPYRQATFLENDYMAGSLGGKSDHTNAISYTQFEWLVNTDNGNHVYLANKETITRDITQDATKLGSVVESIASIDAYGNVLESKKTSKDETGVVTVTTTRAYTPNTDTWWLNKLDTLKVETSEISERAVTDPYISLSDEQKKELDTKTTLTTNYSEYDDNSRKPKKITVSGSSGTGSSTNIAYNSYGLPTSKTVSANVLTGGTWSSSQRVVESITYTKDGTTEADDGYFPLKITNAKQHELYKHTDPATGFVTKTKVQLGDNVYQETINTLDGYQRPYSSKTSGQPKVYTVVTGPDTTHAPENAVVQITTLSAGKPTQKVYQDKLGRTLRVATQGFNSDDWVFTDTQYDALGRKVFESQPYYNGHSKYGVSYSEFDALGRPKSKVTQRSCGGMTTSYAYAGLTTDIEVKDECNSKLITMSRTYNTRDQLIETKDAEDGITRYAYNGQGLPIVIQDAKDNHITAKYNAFGRKTDVNDPNQGKSTFAYNGFGELQKETHSTDTSIIYTVDNLGRVIQRSATGEDTLTYTYDTADNGVGQLHKEVGNGVNRTYEYDVYGRPTGTLINGNNRSYRITTFYDGNYGRAKGLRYPNGLTLEYLYTDAGYLETIQNAASHYIFKKITGQDAFANVTEATLGNELTEITSYSAIDGAMTSKQIADGNNNLMFLNYEQYDGFGNIRKMDVTTGAVGEQHTFTETYTYDNLHRLKTNQVNGIKIGSYTYDAIGNLLSKSDYSNEYDYASEGSGGPNAVKRVQRNGKWVSFSYDKRGNMLTGDGLSSATYNAMDKPTTLVKNGITSQFVYGPNHMRFKHTTNGRTTYYADKLYEEEVQAEETTWRAYIDNVAIVSQTNEQAVQIRYTHTDRLGSSRLFTNHNGDVFATRNYDPFGKPRLANGNSKPSARLGDIVDTTTYRGFTDHEHLDEQQLIHMNGRVYDYNLGRFMSVDPVIQSPGNSQSINPYSYIMNNPLAGTDPSGYNSLCLKGESRVGCGGVGGLSKGEINRSHQFSGGLNEAMSELGFSGNPATTFIENSNGAFQAQHKGHVAITDINSEGQKGTKQGGGSDTSWNESDEAWLQESVQLQSSALSNLVSGQKDITLISGIDWRGYFKRTKNILLAELQVIGGGTQVIAGSVITPLGFGIGSTLGVPLIMHGTGNIQEGFGTIGNLSGIYPNTPQNFTRDIYEHVNPEYGKAAYYGTDVAINLMGAWRLPAKVAPTEGLTLFNRGAANSREVVLMYGQATTVLSANDLYGVSSSLQKAVDELNKVEK
>NZ_CP023397.1|WP_151173877.1|188594_189296_+|purine-nucleoside-phosphorylase
MSTPHISAAPGDFAETVLMPGDPLRAQYIAEHFLDDAKQVTSVRNMFGFTGTYKGKPVSIMGSGMGIPSMSIYARELIVSFGVKNIIRIGTCGGIAQDTKIRDVIFAQGASTDSNVNRARINGYDYAAIADFGLLENGVRAARDLGIDAKVGNVFTTDTFYQADGSFYEQLNKLGVLAVDMETAGLYGVAAEYGAKAMALFTVSDHVITGEATPAEERQSTFNEMVKIALESI
>NZ_CP023397.1|WP_151173876.1|187358_188570_+|phosphopentomutase
MARAIILMADSLGIGAAPDADQFGDVGANTLAHLLQAYEQDKGQPLALTNLSRLGLIDACEAASGASITINERQQPQAAWGYAKELSSGKDTPSGHWEMAGVPVLFDWGYFPQQQPCFPQAFIDELVERTGIPGILGNCHASGTTIIAELGEEHVRSGKPICYTSSDSVFQVAAHEQSFGLDKLYEVCEVARTLLDEHNIGRVIARPFVGDNSNDFERTGNRRDYSVLPPAPTVLDKLAQAGGEVISIGKIADIYAHQGITQKHKAPGLENLLEKTAQVMAEAPDNSLIFTNLVDFDEKYGHRRNAIGYAEALKTFDDFLPRIFAQMNDDDLLLITADHGCDPTAAGSDHTREYVPVIAYRPGMIPVALGERETFADMGQTLAQWFNLPELDYGTGFKAALER
>NZ_CP023397.1|WP_022944791.1|186427_187057_-|uridine-kinase
MTQTIIAIAGASASGKSLFSQTIYNELVNELEPGAIAIIEEDAYYRDQSHLPMAHRIKTNYDHPDAFEHELMVTHLRNLRAGESVDVPIYDYSEHTRSAETRRVLPAKILIVEGILLLSDPALRDEFNIKVFIDTPLDICLMRRMQRDIEQRDRSLQSVVEQYKRTVRPMFYQFIEPSKHSADLVVTRGGKNRVAIDIIKSKIKHLLQE
>NZ_CP023397.1|WP_022944790.1|185189_186413_-|NupC/NupG-family-nucleoside-CNT-transporter
MTTLMSLVGMLALLAIAFGASTNRKAINLRTVGIAFLLQVIIGGFVLFFEFGKNILAKMSAAVAQVISYATDGITFLFGPLASEKTLGFLFAFQVLPVIVFFSSLVAVLYYLGVMDWVIKILGGALQRLLKTSRPESLSATANIFVGQTEAPLIVKPFIASMTKSELFAVMVGGLATVAGSVMAGYVKIGVDLQYLIAASFMAAPGGFLMAKMIVPETETPKEDLAELDGDHEQPVNVIDAAASGASSGMQLALNVGAMLLAFVALIALLNGVLGWFGGWFDYPQLTLQEILGYVFAPVAWLLGVPWDEAIIAGSFIGQKLVVNEFVAYLDFINYRDQLSEHTQAIVTFALCGFANLSSIAILLGGIGGMAPSRRKDIARLGLRAVLAGSMANLMSAAIAGFFLSIA
>NZ_CP023397.1|WP_151173875.1|184234_184987_-|transporter-substrate-binding-domain-containing-protein
MALFLARFTLWVTILLSTMSIAAQPIEVVTELSPPNQLVINGQIGGSSTDIVRHVLSKANVDATINMYPWARAFHLAQKKPNTLLYSVAKTPDRLDKFQWLGKVAYFRLGFVTLASRSEINLRQVNDARPYRIAVQRGDISAKFFADRQFSTVQTADIKHSYRLLLSGKVDLVIDDPNYLGAMAKQFNVPTKELRFVRDIEQLSVYGYLAAHVDSDPQLVANIKAAFSAIEKAAWYQQKLYNPYQDVLTR
>NZ_CP023397.1|WP_151173874.1|183241_184246_+|alcohol-dehydrogenase-catalytic-domain-containing-protein
MTINAYAAMAAGKALEPYQYDPGELAADEVEIAVDHCGICHSDLSMIDNEWGMSEYPLVGGHEVIGRIEKVGRDVNNLEVGQTVGLGWHSGYCGHCPSCDDGDQNLCASAQGTIIAHHGGFADKVRAQSKSVIPLPKGLDAKAAGPLFCGGITVFNPLVQFDIKPTDKVAVIGIGGLGHLALQFLNAWGCDVTAFSSSDSKAKEAKELGAHHIINSRSEQALEEAAGQFDFIISTVNVKLDWNAYINTLKPKGRLHFVGATLEPLDLSVFGLLMGQRSVSASPVGSPGTIAKMLDFAAQHNIAPQIETFKFDDINAALDHVREGKARYRVVLTR
>NZ_CP023397.1|WP_045980132.1|182453_183143_+|hypothetical-protein
MRYLSGLLLFLSLPCWADGMVVDKVYHPYVLPYEKELEWRLVSHQSDAGNVLAQRIGGGGAISETLSVELYAVGERDDNGDFGLAAYETELRWQVVEQGRYWADLGALFEVEKSHRQNAYEFTTGLLFEKEFGSTSLTLNAFAVYEWGADIDSEWESEFRGQYRYRWRAAFQPAIELYSGEDFIGIGPGFIGLHRFAGQRQLKWEAGFITEVGHGGKDHSVRLALEFEF
>NZ_CP023397.1|WP_151173873.1|181738_182467_+|hypothetical-protein
MINSVIVTINQLLPLAIIGVFAIYFVDEKIQGKQWGALAFFVTVPALAYIAALEQLSQGFNYLGFEYSQILLIVLLTLSAGGLAFFRNFMSTLALFACATCLYLSHYVPWLMQLQLNTSVLLGIGLGVGIVLSMAVLLVFLLAWLAQWLNGWLCVALFALHVSGQFITSLDIAAGAGLITLPQPLFDGRQWLDEHSPIGRLLKILIGYEAMPSILSVCVYLGAGALLLLAAYWQRRRNHALP
>NZ_CP023397.1|WP_022944785.1|181406_181742_+|cupredoxin-domain-containing-protein
MQRLIWIMLLLSLPAKAELKEFHLTLKNHLFYPSRLEIPAGEKVRLLVSNHDATPEEFDSFDLNREKVLFPGRVNVIFIGPLAPGEYAFFGEFSPDTARGVVIVKAPQEGQ
>NZ_CP023397.1|WP_151173879.1|198775_199498_+|transposase
MARRPRLNLPYIPQHVVQRGNNRQATFFTEQDFTVYLNKVKDYSRRFDVSVHAFVLMTNHVHLLMTPTTATGVSQLMQSLGRYYVRYVNNTYGRTGTLWEGRYKSSLVDSDRYLLLVSRYIELNPVRANMVVHPSEYPWSSYRHNALDKQIELITEHPVYQALGKDKSARKQAYQALFKSKMPDYSVAQIRDALRRTWVLGDERFKKQIEQQLGHTIELKTHGGDRKSASFNARDKNQQL
>NZ_CP023397.1|WP_151173880.1|199740_200310_-|NAD(P)H-dependent-oxidoreductase
MTKNILIINANPKRSSFCQHLADTYECEAREQNNTQRVNLSALQFNPSLDCGYDNEQPLEPDLQVFQQQIAWADHVVIVSPIWWGSLPAKFKGLFDRSFLPGFAFKYQGYTPVPLLNDKTSRLVLTMDAPPQSLQDQAASVIAQLDIFTLQFSGFQPSAVSLFGSVVAASESEKSAWVNEIKQLGRAAK
>NZ_CP023397.1|WP_151173881.1|200373_200733_-|MerR-family-transcriptional-regulator
MYIGEVAKRTGLSVKAIRLYEARGLITAPPRQGRYRVYNKSHVEVLLLIVEAKALGATLAELKDALIYNNGTLDWSRVHGFLAEIKNKLLSQQSDILKRIDAVERCLSTLDSCPNIQQA
>NZ_CP023397.1|WP_151173882.1|200869_202201_+|diguanylate-cyclase
MQRLLLAPVGLTIELSIEHQLERRIVLRKILIVEDTPTIARVQKHICLQAGYEVDIADSKAKAEALIAKNNYFCAIVDFILPDAPQGEAIPCSTKAKIPTIVMTGSLEGKTREIVDRHPIIDYITKENKQAYQYLKRQLERLPRNEKIKILVVDDSATSRNYVSGLLKRHKYQVLEARDGLEALAMLERDNDISVIVTDSEMPKMRGEELCIEIRRIYTEEDIAIIGISGVESAHLSARFLKNGANDYLRKPFNPEEFYCRVRQNVEMLEQIRTIRRQANSDYLTELPNRRYFFSQVNKSLKAAAQQQQPSMIAMLDVDHFKAVNDRYGHDGGDEVLKALSKALCEHFDYEQVARMGGEEFAVYFAAEEPQHCLQKLEAFRRFVHTQGAALTPQSIAFTVSVGAAYGISDNIEALIKAADVQLYHAKDSGRNTVAYAPLNTDS
>NZ_CP023397.1|WP_151173883.1|202313_203033_-|hypothetical-protein
MLLQTHFPRALGLSALVVLGLSACGSDNTKPTGATVDTPEPAQYRYQVTLTNLTQAQPLSPVAGVLHQQGQFWRIGEPASGALEALAEGGDNSALLANTEVIAHYGGETPISPGHTDEFTLSVEDVADSKLTLATMLVNTNDAFTGVNAVDLTPLAAGQSISLYGHGYDAGTEGNSELAQFIPGPAGMGEGFNAIRDDTNFVALHPGVVSADDGLAQSALGAQHRFDNPVIKVVITRTE
>NZ_CP023397.1|WP_151173884.1|203042_203747_-|hypothetical-protein
MKSLPKMTLSALALTLCHTAGAAELDVRVQNLTQGMYFTPLLVAAHDSNSELFRVATAASSELQAMAEGGAIDGLVNQVEVAGGDVLANPAQGLLAPGHSGEGTLTTRESNTYLSLVAMMLPTNDGFVGLSNWPVPSEPGTYHVYLNAYDAGTEANDEIRGGGAPGVPGMPVPPPLEELIGNGGSGVTNEMSNTLVHIHPGNLGDDSASAGKSDINNSVQRWLNPVAKLTITVQ
>NZ_CP023397.1|WP_151173885.1|204008_204686_-|DUF533-domain-containing-protein
MKDLQKLVGSLNKSGALSGFLGGVAGGGLSGLATGKSGKKTSKKVMKYGALAAIGGLAWKAYQQYAQKSSAAEPSTAHQRSGNFNYHSTPMQQQSFEHVVEDDNEGGQLLLMRAMIAAAYADGHIDEQERQRIFAQVENMDLQTHEKAMLFDELRQPMSLSELVNAVPNAQTGIEVYAASASAIDLSQPISGQYLDALANKLCIPQELVNNVHQQLTQQARLAGE
>NZ_CP023397.1|WP_022944665.1|204951_205341_+|biopolymer-transporter-ExbD
MNRKRPTNTEAQADMTPMLDVVFILLIFFVVTTSFVREHSLSVTRPESNSAVSAENKTLMIQVTHSNHVVMAGRNIETSQIASNIARISATEPFSSVAIRAHEQSRHQQVVTVMNAVREMGQWPIALVD
>NZ_CP023397.1|WP_165381071.1|205393_206092_-|transporter-substrate-binding-domain-containing-protein
MKYWLLLLPLVSCLSIAQNKVFLVTEQLPPLSYVDKQGQVRGDATERVQQLMHHAGLDYSIEVLPWKRAYKQAESSANTLIFTILKTPARSERFDWLCPLVPPMEVYLYKLKNRHDLAPSSLADAKSSLVGASRGSVAHSLLLNQGFIEGKNLMVTTDIDVLTQNLRNGRLDYVLLINTSVHDTDNITAALPENFSRDLPACLAINKQSDPQIKQRLMASFTTLSATNFHQP
>NZ_CP023397.1|WP_040643106.1|206390_207257_+|tetratricopeptide-repeat-protein
MASSYANTPESALPAQQAKGLTPNQEQQTQQVVKDLNEPMYRPLIERYILDELKAVRQDQQALRAEYTEKIAHAQLETADRAIVYTTDTINNVFFILTATASILVLVGWNSLRDVKNKVEDIVNSRVSAITDEYEARLKDLEEQLRGRSEEILNNQKKITITNEIHSLWMRANLESDFATKVEIYDEILNRKPEDVEAIAYKADALLELGDTQEAISLCNQALEIDSDYGYAYWQRACAYALTHEHSDALADIRMALDYSPNLRNELLHESAFASLHDNDSFNEIVNG

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP023397_1	1.1\|198500\|45\|NZ_CP023397\|CRISPRCasFinder	198500-198544	45	NZ_CP045419	Pseudoalteromonas sp. THAF3 plasmid pTHAF3_a, complete sequence	660375-660419	1	0.978

1. spacer 1.1|198500|45|NZ_CP023397|CRISPRCasFinder matches to NZ_CP045419 (Pseudoalteromonas sp. THAF3 plasmid pTHAF3_a, complete sequence) position: , mismatch: 1, identity: 0.978

cttaaatctctcccttgaggcttttgccatcgcggtaaacattca	CRISPR spacer
cttaaatctctcccttgaggcttttgccatcgcggtaaacattta	Protospacer
*******************************************.*

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site	Prophage annotation

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP023396

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CRISPR-Cas detection and classification

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NZ_CP023397

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CRISPR-Cas detection and classification

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection