CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP032669	Listeria monocytogenes strain 52869 chromosome, complete genome	3 crisprs	DinG,cas3,WYL,casR,cas6,cas8b2,cas7,cas5,cas4,cas1,cas2,DEDDh,csa3	2	33	7	6

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP032669_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP032669_1

540004-540588

Orphan

Consensus_repeat	Method
GATGTAAGTNATTTTGATACNAGTTCAGTAACTNATATG	CRT

7 spacers

The CRISPR arrays of NZ_CP032669_1

>merge|NZ_CP032669|1|540004-540588|CRT
GATTTGAGTGGTCTTGATACTAGTGCGGTAACTACTATGTGGGATATGTTTAACAGCTGTAGGGCACTTGAGGAACTGGATGTAAGTCATTTTGATACAAGTTCAGTAACTAATATGTCTTACATGTTTTATGATAATAGAAATCTTGAGGTGCTGGATGTAAGCAACCTTGATACCAGTTCAGTAACTAATATGTATGCCATGTTTGAAGATTGTACTAGTCTTGAAGAGCTGGATGTAAGTCATTTTGATACGAGTTCAGTAACTGATATGTATAGAGTGTTTAATGGCTGTGAAAAACTGAAGAAACTAGATGTAAGTAATTTCGATACCAGTTCCGCTACTGCAATGGTTCAAATGTTTAGAAATTGTAGCGCCCTTGAGAAGTTGGATGTAAGTAATTTTAATACGAGCTTAGTAACTGATATGCGTGCCATGTTTGCTGGTTGTACTAGTCTTGAAGTGTTAGATGTAAGTAATTTTGATACGAGTTCAGTAACTAATATGGCTGCCATGTTTTCTGATAATGAAAAAGTGGAGAAGCTTGATTTAAGTACCTTTGATACCAGTTCAGTGACTAACATG

>NZ_CP032669|1|1|540004-540588|CRT
GATTTGAGTGGTCTTGATACTAGTGCGGTAACTACTATG	TGGGATATGTTTAACAGCTGTAGGGCACTTGAGGAACTG
GATGTAAGTCATTTTGATACAAGTTCAGTAACTAATATG	TCTTACATGTTTTATGATAATAGAAATCTTGAGGTGCTG
GATGTAAGCAACCTTGATACCAGTTCAGTAACTAATATG	TATGCCATGTTTGAAGATTGTACTAGTCTTGAAGAGCTG
GATGTAAGTCATTTTGATACGAGTTCAGTAACTGATATG	TATAGAGTGTTTAATGGCTGTGAAAAACTGAAGAAACTA
GATGTAAGTAATTTCGATACCAGTTCCGCTACTGCAATG	GTTCAAATGTTTAGAAATTGTAGCGCCCTTGAGAAGTTG
GATGTAAGTAATTTTAATACGAGCTTAGTAACTGATATG	CGTGCCATGTTTGCTGGTTGTACTAGTCTTGAAGTGTTA
GATGTAAGTAATTTTGATACGAGTTCAGTAACTAATATG	GCTGCCATGTTTTCTGATAATGAAAAAGTGGAGAAGCTT
GATTTAAGTACCTTTGATACCAGTTCAGTGACTAACATG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP032669.1\|WP_070213240.1\|528824_529973_-\|DUF58-domain-containing-protein	unknown	unknown	gnl\|CDD\|224635
NZ_CP032669.1\|WP_014601344.1\|543374_543539_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP032669.1\|WP_046335442.1\|525795_526551_-\|DUF4866-domain-containing-protein	unknown	unknown	gnl\|CDD\|379782
NZ_CP032669.1\|WP_031645299.1\|542488_542794_+\|LPXTG-cell-wall-anchor-domain-containing-protein	unknown	unknown	gnl\|CDD\|273478
NZ_CP032669.1\|WP_031645301.1\|541975_542461_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP032669.1\|WP_010989479.1\|543600_543837_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP032669.1\|WP_046335439.1\|535186_536737_+\|hydantoinase/oxoprolinase-family-protein	unknown	unknown	gnl\|CDD\|223223
NZ_CP032669.1\|WP_150978828.1\|546148_546460_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP032669.1\|WP_003721244.1\|532809_534093_+\|cytosine-permease	unknown	unknown	gnl\|CDD\|271377
NZ_CP032669.1\|WP_003725196.1\|541481_541955_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP032669.1\|WP_150978829.1\|546423_547401_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|379523
NZ_CP032669.1\|WP_031665241.1\|537556_539095_+\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|368260
NZ_CP032669.1\|WP_003721245.1\|534093_535194_+\|DUF917-domain-containing-protein	unknown	unknown	gnl\|CDD\|226065
NZ_CP032669.1\|WP_010989471.1\|525109_525775_-\|DUF1275-domain-containing-protein	unknown	unknown	gnl\|CDD\|226146
NZ_CP032669.1\|WP_009932193.1\|545850_546174_+\|AP2-domain-containing-protein	unknown	unknown	unknown
NZ_CP032669.1\|WP_003721242.1\|529977_530925_-\|MoxR-family-ATPase	unknown	unknown	gnl\|CDD\|223786
NZ_CP032669.1\|WP_009932195.1\|544075_545806_+\|DUF4365-domain-containing-protein	unknown	unknown	gnl\|CDD\|379535
NZ_CP032669.1\|WP_046335441.1\|526668_528828_-\|transglutaminase	unknown	unknown	gnl\|CDD\|376628
NZ_CP032669.1\|WP_003725199.1\|542869_543136_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP032669.1\|WP_031671624.1\|531080_532676_+\|PucR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225306

Protein	Function_ID	Function_description	E-value
NZ_CP032669.1\|WP_070213240.1\|528824_529973_-\|DUF58-domain-containing-protein	gnl\|CDD\|224635	COG1721, COG1721, Uncharacterized conserved protein (some members contain a von Willebrand factor type A (vWA) domain) [General function prediction only].	1.44685e-52
NZ_CP032669.1\|WP_046335442.1\|525795_526551_-\|DUF4866-domain-containing-protein	gnl\|CDD\|379782	pfam16160, DUF4866, Domain of unknown function (DUF4866). This family consists of uncharacterized proteins around 250 residues in length and is mainly found in various human gut Firmicute species and abundant in human gut metagenomic datasets. The function of this family is unknown.	3.67998e-120
NZ_CP032669.1\|WP_031645299.1\|542488_542794_+\|LPXTG-cell-wall-anchor-domain-containing-protein	gnl\|CDD\|273478	TIGR01167, Zinc_metalloprotease_ZmpB, LPXTG-motif cell wall anchor domain. This model describes the LPXTG motif-containing region found at the C-terminus of many surface proteins of Streptococcus and Streptomyces species. Cleavage between the Thr and Gly by sortase or a related enzyme leads to covalent anchoring at the new C-terminal Thr to the cell wall. Hits that do not lie at the C-terminus or are not found in Gram-positive bacteria are probably false-positive. A common feature of this proteins containing this domain appears to be a high proportion of charged and zwitterionic residues immediatedly upstream of the LPXTG motif. This model differs from other descriptions of the LPXTG region by including a portion of that upstream charged region. [Cell envelope, Other].	1.9759e-05
NZ_CP032669.1\|WP_046335439.1\|535186_536737_+\|hydantoinase/oxoprolinase-family-protein	gnl\|CDD\|223223	COG0145, HyuA, N-methylhydantoinase A/acetone carboxylase, beta subunit [Amino acid transport and metabolism / Secondary metabolites biosynthesis, transport, and catabolism].	5.07276e-106
NZ_CP032669.1\|WP_003721244.1\|532809_534093_+\|cytosine-permease	gnl\|CDD\|271377	cd11484, SLC-NCS1sbd_CobB-like, nucleobase-cation-symport-1 (NCS1) transporter CobB-like; solute-binding domain. This NCS1 subfamily includes Escherichia coli CodB (cytosine permease), and the Saccharomyces cerevisiae transporters: Fcy21p (Purine-cytosine permease), and vitamin B6 transporter Tpn1. NCS1s are essential components of salvage pathways for nucleobases and related metabolites; their known substrates include allantoin, uracil, thiamine, and nicotinamide riboside. NCS1s belong to a superfamily which also contains the solute carrier 5 family sodium/glucose transporters (SLC5s), and solute carrier 6 family neurotransmitter transporters (SLC6s).	6.12636e-95
NZ_CP032669.1\|WP_031665241.1\|537556_539095_+\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|368260	pfam05043, Mga, Mga helix-turn-helix domain. M regulator protein trans-acting positive regulator (Mga) is a DNA-binding protein that activates the expression of several important virulence genes in group A streptococcus in response to changing environmental conditions. This domain is found in the centre of the Mga proteins. This family also contains a number of bacterial RofA transcriptional regulators that seem to be largely restricted to streptococci. These proteins have been shown to regulate the expression of important bacterial adhesins. This is presumably a DNA-binding domain.	1.24338e-19
NZ_CP032669.1\|WP_003721245.1\|534093_535194_+\|DUF917-domain-containing-protein	gnl\|CDD\|226065	COG3535, COG3535, Uncharacterized conserved protein [Function unknown].	0
NZ_CP032669.1\|WP_010989471.1\|525109_525775_-\|DUF1275-domain-containing-protein	gnl\|CDD\|226146	COG3619, COG3619, Predicted membrane protein [Function unknown].	6.55182e-68
NZ_CP032669.1\|WP_150978829.1\|546423_547401_+\|hypothetical-protein	gnl\|CDD\|379523	pfam14253, AbiH, Bacteriophage abortive infection AbiH. This family of proteins confers resistance to bacteriophage.	0.00120617
NZ_CP032669.1\|WP_003721242.1\|529977_530925_-\|MoxR-family-ATPase	gnl\|CDD\|223786	COG0714, COG0714, MoxR-like ATPases [General function prediction only].	7.47241e-102
NZ_CP032669.1\|WP_009932195.1\|544075_545806_+\|DUF4365-domain-containing-protein	gnl\|CDD\|379535	pfam14280, DUF4365, Domain of unknown function (DUF4365). This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria, eukaryotes and viruses. Proteins in this family are typically between 182 and 530 amino acids in length. There is a single completely conserved residue D that may be functionally important.	5.7395e-10
NZ_CP032669.1\|WP_046335441.1\|526668_528828_-\|transglutaminase	gnl\|CDD\|376628	pfam01841, Transglut_core, Transglutaminase-like superfamily. This family includes animal transglutaminases and other bacterial proteins of unknown function. Sequence conservation in this superfamily primarily involves three motifs that centre around conserved cysteine, histidine, and aspartate residues that form the catalytic triad in the structurally characterized transglutaminase, the human blood clotting factor XIIIa'. On the basis of the experimentally demonstrated activity of the Methanobacterium phage pseudomurein endoisopeptidase, it is proposed that many, if not all, microbial homologs of the transglutaminases are proteases and that the eukaryotic transglutaminases have evolved from an ancestral protease.	1.03912e-27
NZ_CP032669.1\|WP_031671624.1\|531080_532676_+\|PucR-family-transcriptional-regulator	gnl\|CDD\|225306	COG2508, COG2508, Regulator of polyketide synthase expression [Signal transduction mechanisms / Secondary metabolites biosynthesis, transport, and catabolism].	2.04898e-60

>NZ_CP032669.1|WP_031665241.1|537556_539095_+|helix-turn-helix-domain-containing-protein
MREYLDSKSQKKVALLEKIFYAENHTSTQEELLNDLNITYPTLISTIKTINFDIERFGYKAFSIVHSAPNLSYTLKISDNCSIQLIINAYIRESPKFQILETLLLASFPNLQALAKKVHVSYSGIKKEIKELNEELRERNLSISTGNQVEITGDEFSLRIFYAFLFLVTYSGDRWPFSFVQYDEITDLLESCPKEIYRANSIDKGMMIHYYVAMHLLRDRMNCQIDTTRQFKVALYKACTEESKKSESAFIKKVAKQLPNRNYKEITYTTQIILSTIVAFGSYSSIEKMPSFFYMDEQLEEIGFMKLVDFASERVNDNLSIPFSEKEMELLRYSFASINYRYFLLDNLINKFNNIVPGYTDLDRNIRKIHKVNHLEPLISQLVNLKEMRLLKPFEERLASDYLIILDKRIDFSIHTLPIKVTILSTISNETAVFDFMRYFSSYYNLEIINQVDPVVDLYISDFSVSPEVLTSLRINQPIVYVNTRWLESDYVKINDNLAKIARKKFIANKKD
>NZ_CP032669.1|WP_046335439.1|535186_536737_+|hydantoinase/oxoprolinase-family-protein
MYKIGIDVGGTNTDAVILDENQQLIHSVKMPTSEDIETGITESLHRVLSETGIDRSKVTHAMLGTTQCTNAIVERKKLAKVGVLRLGYPATASVLPYTTWPEDMVGFLSGKYKLTGGGYEYDGQVLSEINEAEIRETLASWKGEVESVAVVGVFSSLKNDQELAVQKIIEEELGANIPVSISSSVGSVGLIERENATILNAALFKVIAATSDGFEKALEQEGIAHAEIYLCQNDGTLMSLNYARQFPILTIACGPTNSIRGASYLAGLKDAMVLDVGGTTSDIGVLTDGFPRESSLAVDVGGVRTNFRMPDIISIGLGGGSIVREKDGDITIGPDSVGYRISEEALVFGGKTMTTTDIAVRLGMAEIGNPELVAHIPTDFAEKAYKKIAEMTEDAIDKMKTSSGSVSLVLVGGGSVIIPDEISGVAQIFRDKNGPVANAIGASISQISGQYEQIYIYSQIEREEALQDAEQKAREQATLAGAVTDSIEVVEVEEIPLAYHPGNATRLRVKVVGNLV
>NZ_CP032669.1|WP_003721245.1|534093_535194_+|DUF917-domain-containing-protein
MRYLDEQAIENIAIGAAFLGTGGGGDPYIGKMMALTAIKKHGPIKLLSPEEIADDDYFIPAAMMGAPSVLIEKFPKGDEFVRVFEKLGRYVGKEVKGTFPMEAGGVNSMIPIVVAAQLGLPMVDCDGMGRAFPELQMVTFHLDGISATPMAITDEKGNIGIMETIDNKWTERLARVTTVEMGASSLVSLYPCNGAQIKQSSIKNIVTLSEEIGKVIRETSMDEAEKLQKLLDVTHGYHLFEGKITDVVRETRAGFNFGRVKIDGLNKDTNSEVIVHFQNENLVAEKNGEPIAITPDLICMVDLETLMPVTTEALKYGKRVRVMALPADDAWRTDKGIETVGPRYFGYDVDFEPLEELVKKEERRHV
>NZ_CP032669.1|WP_003721244.1|532809_534093_+|cytosine-permease
MTEKKTVEQAQSWQSLAFVWTGAMICVPSLLVGGTLISGMPLWEAILIALLGYGVIVVFMIYQGMQSSDLGIPAVSVASQVFGEQGSKKIISILLAIACLGWFGIQANVCGAAFSQFLGIYGINLPVPVSSLIWGVIMLLSAIYGIRILSILNYIAVPILLFVCIYGLVVSLNNGGLAVVENYKPAGSMSFMTGLAITIGSFALGAVIAGDYSQYTKSRKDVVKAAIVGILPSGVLMIAVGAILALTAGTADISVVFTNLGLPVLGIIGLILAAWTTNAVNAFSGGIAIINVFNISEKYHKVAVAIAGGLGTVLAVIGILNHFVPIMSVLSAMVPPVAGVMIASYWIVQKGDKSKWAPVPGVNWLGVTSWLVGAVIAGIPVILTFFPALPQLPNQPLIGIILSLAVYLVGAKVLSGKTNNVENLEGK
>NZ_CP032669.1|WP_031671624.1|531080_532676_+|PucR-family-transcriptional-regulator
MSVKLADLMKLPSLKEARVVSGKSGLSKLVSSISVLEYTEVALLEDDLFDNDEFYGSEIVVSAFVNIREDVEAQCRTIERLHKVGEVALILYYVGIFVPKIDQKLIDFANELDFTIIVMPENEMSLRYSEVIYEVVEAIVKQEMTDTNFVTESLEQISSVRPPQRNIDTTLKILSDRTHSSLVLTDNSFQVINSITWPRTRHWDFERIIEASKQIGEHELVQLTLDERDFYTARKPIFQDGMQAMHLFMMKEKGVLTADVVMQITEVVQVFMNLWGRNYVEISTAELMKAILNDESVKMRRLGKILNVDVSSIKWMWLVKTEEIRNNEQVLAELKSFVASHFQVSLIDLFEDNIVVLLDNSVAQRDRTHTANEFAMMMKEHGIDLKITVCQGMAQTSDVQSAYSLVNEYKNAANAIYANKSIYSLQEIDFAAKCVEIVDRGELAIAEQMRPLKSLEDNDELIETLSVFLLEGESNYNQAAELLFLHKNTIKYRIQRINELLQYPATKIPESYNLYLAVAIRRLLGGNNNNK
>NZ_CP032669.1|WP_003721242.1|529977_530925_-|MoxR-family-ATPase
MSIEPSIKIEEIINEVEKVIVGKRHVVKLSLTALLAGGHVLLEDVPGVGKTMMVRTLSKTIGVSFKRIQFTPDLLPADVTGVSIFNPETRDFEFRPGPVMGNIVLADEINRTAPRTQAALLEGMAENSVTVDGITRKLANPFFVMATQNPIEYEGTYALPEAQLDRFLLKINIGYPTVEEEMQLLTLKQYQDPLDQTQQVVTLSELLDLKNKAKQVFIDDVLKNYIIRLVDATRKHPSVALGISPRGSLAFMQAAQAFALIEGRDYVIPDDIQYLAPYIFTHRLILKSEAYYNEETAESIIASILKNTSVPVEKR
>NZ_CP032669.1|WP_070213240.1|528824_529973_-|DUF58-domain-containing-protein
MLKKRLLLASRWIIMLIIYAGLWTYTLFQGDTASWFLTYFFSFILLLLFLSSIYPLKAWKVNRSFVKNTYHDGDLIDMQVSFTRKSRYPVGYLLFQQKIPATFGKVRARQQVVYPLFKKQFTVTLAGFVGVRGIHSFLPVDVETSDAFGLLERSRQLSSEKSLTIYPTYFPNVLEKISEASPENERNAAYWTLKKNSNLHSLREFSSGDRISLIDWKSSAKSDQLMTREFENSATSRLSVIFYGASHPNFELSLRAAYSFIRKISEENGEIRVTLLGDQTSKFAPAKGTSRLQDISTAFAEIAPVDSLTLQESLDSNLHSGEKILLFTPCMDTMLMQKVTRLTDNKQLQIITFQSEHSKAMDAPAIFLEPASLLSRWEREAK
>NZ_CP032669.1|WP_046335441.1|526668_528828_-|transglutaminase
MKRYLTLVMLFILSVLLISEWIYPFAELTELSTATWIILFITLSLGSFFLRLKYYWTIPLHVVMIIIISGIYYAKGGILAGNWLGSFFQITFNGFRDMVQFRSSDISMDFILIVFLIALWLLSYITTYSILRKQRIMSVLVLTVAYLAVINTFTDYNSNWAIVRTVLEGFLLLHLALASRIATPNRISADSLKRNGLFYHGFVILLLAVFVFSSLMLPKKAPIFPDPIPTIKNALGINTTRTVGYSEDDTTLGGALKKDNATVFTARAEKGHYWRVESKTVYTGTGWANANSGDVISFSSGDNFPIQLTEKTTGATNTAEISFASSSDYMPYPYGTQAVNGAVDSFSANLTIERVGPVDTIKNYTVQLKTPVYNIEKMQNADFSTLSNTFVSQYTQTPKDLPDRVTKLANKVTKDADSIYDKTKAIERYLSASGTFTYSTDDAKETPMGADYVDQFLFETQIGYCDNFSTSMVVMLRSLGIPARWAKGYTPGEGEKKENDAKTTYTITNNNAHSWPEVFFPGTGWVPFEPTATFSNPENFQEPTTETANKPETPNDSTSTPETPNTPDKTPEQDNGSSSTGETPKKEEPKTETATSNVEIPSWVWWIPAGLVVALLALAIVFRRRIRGYLLLRSLRNSPEFGKTYHRLMKLLASYGYVRESSETLRHFSARVDADLTTSEFSRLTKMYETQLYSKNLTEKVIAAEETQLVQQIIARLTK
>NZ_CP032669.1|WP_046335442.1|525795_526551_-|DUF4866-domain-containing-protein
MTTIFPKEQNVTPLFEQILANPTACRRFKDVFLDNLESYQETRGFEKDDTLFAKIILSAYRQSDVSALLLGVCGRTLFELLRQAFLIPKKLTVDNPFFLTDKEGNFIAKKDDISNREQEKFQEIYQSDLHHSETTIFLVDDDDIVHSYEPDFSISTKRINKKRGILVLYSLPNTLKLEMTESEVYAFIWKTFLHIQEIIPSSRIFYGQETSENADELGVFLPIHHFEKKLLQNIEQVNELVDALREQMVNK
>NZ_CP032669.1|WP_010989471.1|525109_525775_-|DUF1275-domain-containing-protein
MARTRQISESIGLGLLLALAGGFMDAYSYIERGQVFANAQTGNILLFGINISEGNWAIAIQYFWPVVSFTVGIALSEVIHRRDIRRLHWRQLSVLIEAVILIGVAFIPLDHNLIANSLISFVCGIQVESFRKMHGRGVATTMCIGNLRSATQNLCDYFEYKEKQYLHNSFLYFSVILSFIIGAVVGNFFIQLFAQYAILVCAFLQLIAFMMMFIDRESKII
>NZ_CP032669.1|WP_003725196.1|541481_541955_+|hypothetical-protein
MKKKRVVIISLLLLLVSVIGISSYFLFKDKINLLDVDHSAVDWNGKKQKDTSGEENTIAIPGFEKVTLYANETTQAVNFHNPEINDCYFKISLIHPDGSVLWISDLIEPGKGMYSIELEKTLAVGEYENAVLKYECFSLNDQSPLNGSEINLKLVVV
>NZ_CP032669.1|WP_031645301.1|541975_542461_+|hypothetical-protein
MNKLVLSTLSVAAMGMVFFSGGTAYAADKEGNTVVEYSVEGDYTLVVPEKVNLSNDNATEMSVKTINRNLEPGKEVEVTLSSGLSADGEIELQRVGATSDVITSSFKSNNSTVTMANPVIGSFSGYAIDETEVSKIQIGSPQGDKKAGAYQTTLTFTAAFK
>NZ_CP032669.1|WP_031645299.1|542488_542794_+|LPXTG-cell-wall-anchor-domain-containing-protein
MKRKLVLAMVLISFCGMFFLSPDRVQASQTVVEVLISENDLDVSEENIQEIPKKELAASSDKDNKQHTLPKAGDTVTNYTLLGLVLILIWLIMQRKRKKKE
>NZ_CP032669.1|WP_003725199.1|542869_543136_+|hypothetical-protein
MARIEYGEEIQKSLLVLYSRGSTIDSICKEYGIPRYEFHKWMKLHDADKLETKEVKTFLQIRELKQQKNKLEEEILFLNEAINLLESP
>NZ_CP032669.1|WP_014601344.1|543374_543539_+|hypothetical-protein
MYVESKEELEKIIYQQLINNINVKPDPWKWEERNALIVEIEVKAVLEKYGSTPI
>NZ_CP032669.1|WP_010989479.1|543600_543837_-|hypothetical-protein
MSLKKILESDESIEKKEQQIDSYYQSELITRVEACELLDVSTKSLDRYIKQNKLSFQLNSLLIPHFCLIVLLMPLAIL
>NZ_CP032669.1|WP_009932195.1|544075_545806_+|DUF4365-domain-containing-protein
MVKYTNPKIEKLGVNAVSNYIVESDYLSDFLAQQSTEPATDGTIRIYNGPGERKRDLIGIVPVQVKGTTTKNIIKYNRHEIDIVDLTYYYKVGGVVYFVVYVTNKVPKIYYRDLLRIDIKEILKKNEKLRGKKEKGTITIDFREVPVNVEDFRTVLLNFHKDQDYQTKDYVELGSINEISRDLTFTIIAPNSNIVEALKYVSPVLYKNEGDLKIPVRRFKIGELSVFTKSEFSIGIKGANSYIATVMEGEEETEIQIGSLQQLIVKFKEGRFKVDFEAKGKIQETIELLEILLGIVTGVNLYIDNKPVTEFFIEEVNEDFISRVNHALESFKKTQEALNHCKVPSNFHYEELTENDIDVINSIMELYQTSIDNTWGKFEFNNRLVYLLKHKGTIYNLLDSNVALEINFWSKREDGIQYTTTPLILIDDFSKMNDTEICNIKGPIEKLIPIHEKACSDINLICVRLIDAYDQTNNNQFLLVAFELLELIIPFTTNNEIHLIYLNKYQIKKRWDNLVMEDINHLVSIQKEFEEDKRIHLATLILLSAKNDAAQLLSELKNNEGFSLEDMPILNLLEKN
>NZ_CP032669.1|WP_009932193.1|545850_546174_+|AP2-domain-containing-protein
MYQKASEKMKETMKANIALVESIRISSISNKKLQSDNKSGHTVVTFKDNKWVARICVSGVEHQLGSFVTKEEAIDARIEGEKYFQPLINKYNNRLDVFYSERRPFWT
>NZ_CP032669.1|WP_150978828.1|546148_546460_+|hypothetical-protein
MNVDPFGRKVELMIIGNGLDVKANLASTFVDYYKHRCKLMRLEYNEDDFYRLKSKNYFPMKVKMQQFPSIRRCNIEILSIDAETAINENITFWDLVLFFLPLR
>NZ_CP032669.1|WP_150978829.1|546423_547401_+|hypothetical-protein
MGFSSFFFAFKVEGDLKWCNIESKIERVLNKLGGYLSDPINIILNNCGFGENLEDEQENDLYNLMEERLEEKDKYVLSVAFIHKLNSYSNCSLEEFLMLELNKYEKYFSDYIKTEVTNKYEEYHKTRNNILTKLSGGLGATHSISVMNFNFTPNQFSDSVKLNEKIGLAHVNVHGSYLANSIFGIDTKSLEDIDTIGSGYRFTKTYRKLTLKTKRSTEILYHDITDIIFYGHSLGQADYAYFQSIFDYLDIYNNTIVLTFYYSDYKENVREEQTIAVRNLIEEYGKTFDNKHKGKNLLHKLLLEERISVTDLEIYEEDYSSKDMK

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Crispr_ID: NZ_CP032669_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP032669_2

585407-585824

Unclear

I-A

Consensus_repeat	Method
GTTTTAGTTACTTATTGTGAAATGTAAAT	PILER-CR
GTTTTAGTTACTTATTGTGAAATGTAAAT	CRISPRCasFinder
GTTTTAGTTACTTATTNTGAAATGTAAAT	CRT

6 spacers

cas6,cas8b2

The CRISPR arrays of NZ_CP032669_2

>merge|NZ_CP032669|2|585407-585824|PILER-CR,CRISPRCasFinder,CRT
GTTTTAGTTACTTATTTTGAAATGTAAATGTTGGTGTTTTCGTTTCACTTACTACATATGTTCCGTTTTAGTTACTTATTTTGAAATGTAAATGTAGAAACGTAGAATCTTACTTTTTTGTCGTTCATTGTTTTAGTTACTTATTTTGAAATGTAAATTCGCCAATGTATAAGTAATCCTCTTTATTCGATACAGTTTTAGTTACTTATTGTGAAATGTAAATTTCGCCATGACGAAATCTAGCGCTTGTCCTACTAAGTTTTAGTTACTTATTGTGAAATGTAAATGGCACAGTCTTCACGATTTCGGGGATGGGGAAAACTGTTTTAGTTACTTATTGTGAAATGTAAATTTGGTTCCTTTGGAAAACAACAATAGAGTGTAGTATTGTTTTATTCAATCATTCAGAATTGGTAAA

>NZ_CP032669|2|1|585407-585758|PILER-CR
GTTTTAGTTACTTATTTTGAAATGTAAAT	GTTGGTGTTTTCGTTTCACTTACTACATATGTTCC
GTTTTAGTTACTTATTTTGAAATGTAAAT	GTAGAAACGTAGAATCTTACTTTTTTGTCGTTCATT
GTTTTAGTTACTTATTTTGAAATGTAAAT	TCGCCAATGTATAAGTAATCCTCTTTATTCGATACA
GTTTTAGTTACTTATTGTGAAATGTAAAT	TTCGCCATGACGAAATCTAGCGCTTGTCCTACTAA
GTTTTAGTTACTTATTGTGAAATGTAAAT	GGCACAGTCTTCACGATTTCGGGGATGGGGAAAACT
GTTTTAGTTACTTATTGTGAAATGTAAAT

>NZ_CP032669|2|1|585407-585758|CRISPRCasFinder
GTTTTAGTTACTTATTTTGAAATGTAAAT	GTTGGTGTTTTCGTTTCACTTACTACATATGTTCC
GTTTTAGTTACTTATTTTGAAATGTAAAT	GTAGAAACGTAGAATCTTACTTTTTTGTCGTTCATT
GTTTTAGTTACTTATTTTGAAATGTAAAT	TCGCCAATGTATAAGTAATCCTCTTTATTCGATACA
GTTTTAGTTACTTATTGTGAAATGTAAAT	TTCGCCATGACGAAATCTAGCGCTTGTCCTACTAA
GTTTTAGTTACTTATTGTGAAATGTAAAT	GGCACAGTCTTCACGATTTCGGGGATGGGGAAAACT
GTTTTAGTTACTTATTGTGAAATGTAAAT

>NZ_CP032669|2|2|585407-585824|CRT
GTTTTAGTTACTTATTTTGAAATGTAAAT	GTTGGTGTTTTCGTTTCACTTACTACATATGTTCC
GTTTTAGTTACTTATTTTGAAATGTAAAT	GTAGAAACGTAGAATCTTACTTTTTTGTCGTTCATT
GTTTTAGTTACTTATTTTGAAATGTAAAT	TCGCCAATGTATAAGTAATCCTCTTTATTCGATACA
GTTTTAGTTACTTATTGTGAAATGTAAAT	TTCGCCATGACGAAATCTAGCGCTTGTCCTACTAA
GTTTTAGTTACTTATTGTGAAATGTAAAT	GGCACAGTCTTCACGATTTCGGGGATGGGGAAAACT
GTTTTAGTTACTTATTGTGAAATGTAAAT	TTGGTTCCTTTGGAAAACAACAATAGAGTGTAGTATT
GTTTTATTCAATCATTCAGAATTGGTAAA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP032669.1\|WP_009932856.1\|587906_588365_-\|MarR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|378956
NZ_CP032669.1\|WP_003721297.1\|586835_587516_+\|type-1-glutamine-amidotransferase	unknown	unknown	gnl\|CDD\|153212
NZ_CP032669.1\|WP_003733190.1\|584233_585169_+\|ribose-phosphate-pyrophosphokinase	unknown	unknown	gnl\|CDD\|234929
NZ_CP032669.1\|WP_009930756.1\|581452_582499_+\|galactitol-1-phosphate-5-dehydrogenase	unknown	unknown	gnl\|CDD\|176198
NZ_CP032669.1\|WP_003721301.1\|590682_591114_+\|universal-stress-protein	unknown	unknown	gnl\|CDD\|366180
NZ_CP032669.1\|WP_003721294.1\|582822_584094_+\|PTS-galactitol-transporter-subunit-IIC	unknown	unknown	gnl\|CDD\|226298
NZ_CP032669.1\|WP_046335430.1\|593879_594602_+\|CRISPR-associated-endoribonuclease-Cas6	cas6	pfam01881_cas6_CAS-I:CAS-III	gnl\|CDD\|273848
NZ_CP032669.1\|WP_046335432.1\|588746_590582_+\|lmo0514-family-class-1-internalin	unknown	unknown	gnl\|CDD\|380190
NZ_CP032669.1\|WP_003721290.1\|580396_580795_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP032669.1\|WP_003733193.1\|577218_579279_+\|BglG-family-transcription-antiterminator	unknown	unknown	gnl\|CDD\|226234
NZ_CP032669.1\|WP_012951245.1\|580805_581456_+\|ribulose-phosphate-3-epimerase	unknown	unknown	gnl\|CDD\|223114
NZ_CP032669.1\|WP_003721298.1\|587540_587900_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|131113
NZ_CP032669.1\|WP_003721293.1\|582514_582808_+\|PTS-sugar-transporter-subunit-IIB	unknown	unknown	gnl\|CDD\|99908
NZ_CP032669.1\|WP_046335431.1\|591160_592591_-\|CapA-family-protein	unknown	unknown	gnl\|CDD\|225399
NZ_CP032669.1\|WP_003733192.1\|579282_579885_+\|SIS-domain-containing-protein	unknown	unknown	gnl\|CDD\|223865
NZ_CP032669.1\|WP_003721303.1\|592711_593527_-\|histidine-phosphatase-family-protein	unknown	unknown	gnl\|CDD\|223483
NZ_CP032669.1\|WP_009930754.1\|586149_586728_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP032669.1\|WP_003733194.1\|576459_577110_+\|transaldolase	unknown	unknown	gnl\|CDD\|223254
NZ_CP032669.1\|WP_003733191.1\|579912_580380_+\|PTS-sugar-transporter-subunit-IIA	unknown	unknown	gnl\|CDD\|238129
NZ_CP032669.1\|WP_046335429.1\|594617_596306_+\|type-I-B-CRISPR-associated-protein-Cas8b1/Cst1	cas8b2	cd09754_cas8b2_CAS-I-B	gnl\|CDD\|187884

Protein	Function_ID	Function_description	E-value
NZ_CP032669.1\|WP_009932856.1\|587906_588365_-\|MarR-family-transcriptional-regulator	gnl\|CDD\|378956	pfam12802, MarR_2, MarR family. The Mar proteins are involved in the multiple antibiotic resistance, a non-specific resistance system. The expression of the mar operon is controlled by a repressor, MarR. A large number of compounds induce transcription of the mar operon. This is thought to be due to the compound binding to MarR, and the resulting complex stops MarR binding to the DNA. With the MarR repression lost, transcription of the operon proceeds. The structure of MarR is known and shows MarR as a dimer with each subunit containing a winged-helix DNA binding motif.	9.15558e-13
NZ_CP032669.1\|WP_003721297.1\|586835_587516_+\|type-1-glutamine-amidotransferase	gnl\|CDD\|153212	cd01741, GATase1_1, Subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. This group contains a subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. GATase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. Glutamine amidotransferases (GATase) includes the triad family of amidotransferases which have a conserved Cys-His-Glu catalytic triad in the glutaminase active site. In this subgroup this triad is conserved. GATase activity can be found in a range of biosynthetic enzymes, including: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase , anthranilate synthase component II, glutamine-dependent carbamoyl phosphate synthase, cytidine triphosphate synthetase, gamma-glutamyl hydrolase, imidazole glycerol phosphate synthase and, cobyric acid synthase. Glutamine amidotransferase (GATase) domains can occur either as single polypeptides, as in glutamine amidotransferases, or as domains in a much larger multifunctional synthase protein, such as CPSase.	7.71833e-60
NZ_CP032669.1\|WP_003733190.1\|584233_585169_+\|ribose-phosphate-pyrophosphokinase	gnl\|CDD\|234929	PRK01259, PRK01259, ribose-phosphate diphosphokinase.	1.26262e-153
NZ_CP032669.1\|WP_009930756.1\|581452_582499_+\|galactitol-1-phosphate-5-dehydrogenase	gnl\|CDD\|176198	cd08236, sugar_DH, NAD(P)-dependent sugar dehydrogenases. This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Horse liver alcohol dehydrogenase is a dimeric enzyme and each subunit has two domains. The NAD binding domain is in a Rossmann fold and the catalytic domain contains a zinc ion to which substrates bind. There is a cleft between the domains that closes upon formation of the ternary complex.	0
NZ_CP032669.1\|WP_003721301.1\|590682_591114_+\|universal-stress-protein	gnl\|CDD\|366180	pfam00582, Usp, Universal stress protein family. The universal stress protein UspA is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. UspA enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae UspA reveals an alpha/beta fold similar to that of the Methanococcus jannaschii MJ0577 protein, which binds ATP, though UspA lacks ATP-binding activity.	4.03126e-27
NZ_CP032669.1\|WP_003721294.1\|582822_584094_+\|PTS-galactitol-transporter-subunit-IIC	gnl\|CDD\|226298	COG3775, GatC, Phosphotransferase system, galactitol-specific IIC component [Carbohydrate transport and metabolism].	7.01085e-178
NZ_CP032669.1\|WP_046335430.1\|593879_594602_+\|CRISPR-associated-endoribonuclease-Cas6	gnl\|CDD\|273848	TIGR01877, CRISPR-associated_endoribonuclease_Cas6_1, CRISPR-associated endoribonuclease Cas6. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This broadly distributed, highly divergent Cas family is now characterized as an endoribonuclease that generates guide RNAs for host defense against phage and other invaders. The family contains a C-terminal motif GXGXXXXXGXG, where the each X between two Gly is hydrophobic and the spacer XXXXX contains (usually) one Arg or Lys. The seed alignment for the current version of this model has gappy columns removed. Members of this protein family are found associated with several different CRISPR/cas system subtypes, and consequently we designate this family Cas6.	2.71791e-32
NZ_CP032669.1\|WP_046335432.1\|588746_590582_+\|lmo0514-family-class-1-internalin	gnl\|CDD\|380190	NF033186, internalin_K, class 1 internalin InlK. Internalins, as found in the intracellular human pathogen Listeria monocytogenes, are paralogous surface-anchored proteins with an N-terminal signal peptide, leucine-rich repeats, and a C-terminal LPXTG processing and cell surface anchoring site. Members of this family are internalin K (InlK), a virulence factor. See articles PMID:17764999. for a general discussion of internalins, and PMID:21829365, PMID:22082958, and PMID:23958637 for more information about internalin K.	5.471e-119
NZ_CP032669.1\|WP_003721298.1\|587540_587900_-\|hypothetical-protein	gnl\|CDD\|131113	TIGR02058, lin0512_fam, conserved hypothetical protein. This family consists of few members, broadly distributed. It occurs so far in several Firmicutes (twice in Oceanobacillus), one Cyanobacterium, one alpha Proteobacterium, and (with a long prefix) in plants. The function is unknown. The alignment includes a perfectly conserved motif GxGxDxHG near the N-terminus. [Hypothetical proteins, Conserved].	5.62162e-67
NZ_CP032669.1\|WP_003733193.1\|577218_579279_+\|BglG-family-transcription-antiterminator	gnl\|CDD\|226234	COG3711, BglG, Transcriptional antiterminator [Transcription].	3.95572e-80
NZ_CP032669.1\|WP_012951245.1\|580805_581456_+\|ribulose-phosphate-3-epimerase	gnl\|CDD\|223114	COG0036, Rpe, Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism].	8.25352e-108
NZ_CP032669.1\|WP_003721293.1\|582514_582808_+\|PTS-sugar-transporter-subunit-IIB	gnl\|CDD\|99908	cd05566, PTS_IIB_galactitol, PTS_IIB_galactitol: subunit IIB of enzyme II (EII) of the galactitol-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII is a galactitol-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain that are expressed on three distinct polypeptide chains, in contrast to other PTS sugar transporters. The three genes encoding these subunits (gatA, gatB, and gatC) comprise the gatCBA operon. Galactitol PTS permease takes up exogenous galactitol, releasing the phosphate ester into the cytoplasm in preparation for oxidation and further metabolism via a modified glycolytic pathway called the tagatose-6-phosphate glycolytic pathway. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include galactitol, chitobiose/lichenan, ascorbate, lactose, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.	3.06007e-27
NZ_CP032669.1\|WP_046335431.1\|591160_592591_-\|CapA-family-protein	gnl\|CDD\|225399	COG2843, PgsA, Putative enzyme of poly-gamma-glutamate biosynthesis (capsule formation) [Cell envelope biogenesis, outer membrane].	2.6363e-100
NZ_CP032669.1\|WP_003733192.1\|579282_579885_+\|SIS-domain-containing-protein	gnl\|CDD\|223865	COG0794, GutQ, Predicted sugar phosphate isomerase involved in capsule formation [Cell envelope biogenesis, outer membrane].	1.15952e-75
NZ_CP032669.1\|WP_003721303.1\|592711_593527_-\|histidine-phosphatase-family-protein	gnl\|CDD\|223483	COG0406, phoE, Broad specificity phosphatase PhoE and related phosphatases [General function prediction only].	5.01016e-50
NZ_CP032669.1\|WP_003733194.1\|576459_577110_+\|transaldolase	gnl\|CDD\|223254	COG0176, MipB, Transaldolase [Carbohydrate transport and metabolism].	1.91243e-61
NZ_CP032669.1\|WP_003733191.1\|579912_580380_+\|PTS-sugar-transporter-subunit-IIA	gnl\|CDD\|238129	cd00211, PTS_IIA_fru, PTS_IIA, PTS system, fructose/mannitol specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIA PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation.	2.76446e-37
NZ_CP032669.1\|WP_046335429.1\|594617_596306_+\|type-I-B-CRISPR-associated-protein-Cas8b1/Cst1	gnl\|CDD\|187884	cd09754, Cas8a1_I-A, CRISPR/Cas system-associated protein Cas8a1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Large proteins, some contain Zn-finger domain; signature gene for I-A subtype; also known as CXXC_CXXC family.	6.40364e-26

>NZ_CP032669.1|WP_003733190.1|584233_585169_+|ribose-phosphate-pyrophosphokinase
MAGKMKLFSVTSERPLATKIADYLDIPLCEVELQKFSDGEVKINIEESIRGTNAYVVQSMNSNVNERLMELLIMVDALKRASVHSINIIMPYYGYARQDRKARSREPITAKLMANLIQRAGANRLITVDLHAAQIQGFFNIPIDHLSAIPLIGDYLIENYGEKDVVVVAPDHSGVVRARRIADRLNAPIAILNRKPRPHEDEIMSVIGDVKGKVAIVVDDIIDTGVRATTSADILLEKGAVEVIACATHSVMAGNATERLQNSNIKEVITSDSIDLPEDKQFDKLTTISIGRILGRAIEGVQENRSLHPLF
>NZ_CP032669.1|WP_003721294.1|582822_584094_+|PTS-galactitol-transporter-subunit-IIC
MDIILDFFKYIIGLGVTVMMPIIITILGVIFRKKISVAFKAGLTVGVGFVGLGVITSLMLTTITPVTKALVENYNFKLTATDIGWGVGSSLAWGTEVVPFVFVAIIATNILMIAFKWTKTMDVDIWNYWQPLFIASALYLTTGSMIIAVLSSIINMAIIFKIADWTQKDVEDVLGLEGISLPQIQTTGWALVGYPMNWLLGKIPGVRKINWSTEKVQSRLGIFGEPMLMGLIIGGGLAAIAQMPLSQVLQTGVTIAASLVLIPRMVSLLMDGLTVISEAAHEFMEKRFPGRELFIGLDSAVGIGHPFVLSLGLLMIPITLILAFILPGNKVLPLADLTALPFYMIFAIVPSKGNLFRGIFTGIVIVIITLYLSGAAAPLMTELAGQIGYNIPKDAVEVTSLAVGTQWYTWIVYYGLHWFGGIL
>NZ_CP032669.1|WP_003721293.1|582514_582808_+|PTS-sugar-transporter-subunit-IIB
MKKKRIYVCCGTGIATSTVISKKVRAVLDEKRIPYEISQCTVQEVASKVSTSKPDIIVSSTTVTGDVGDVPVVIGRSFLTGLKKQETIDEILAILQD
>NZ_CP032669.1|WP_009930756.1|581452_582499_+|galactitol-1-phosphate-5-dehydrogenase
MKALKLYGKRDLRYEEADMPTIEEPDDVILKVKTVGICGSDISRYSKLGPYVPGMVWGHEFSGEVIEVGSEVTDIEIGDRAAGCPALYCGECEYCKKGEFARCRKLTVIGARHPGAYAEYIKLPAENVVKIPNELDYEAAALVEPSAVVVHGFYHTKLQAGDDVVVVGSGNIGLLAIQWAKVFGARRVIAIDVDDKKLALAKEVGADVVINSLKEDPLEVVAAHTDGLNADLVVEAAGSPITSAQVFAYAKKGGGVVFLGIPYADVTIERFYFEKIVRSELTVWGSWNAISAPFPGKEWQTTIHFLANKQINIEPMITHRLSLAEGPEVFERIYERNEFFGKVLFFPE
>NZ_CP032669.1|WP_012951245.1|580805_581456_+|ribulose-phosphate-3-epimerase
MAKIVPSVFGADIGRINEQLQVLEKNDIDLLHVDMMDGSFVPNIAFGPDQIKMMKKGTKLQFDVHMMVYEPDRYIPRLVEAGAHMITVHQEATTHLHRTIQLIKSYGVRAGVVLNPGTPPSTLEYVLDDIDCILLMTVNPGLGGQKFFQSSLEKIRKTKAYIGNRPIQIEVDGGVNAELAKECTLAGADLIVVGSYLFEGDIEANLEKLAKGVLTE
>NZ_CP032669.1|WP_003721290.1|580396_580795_+|hypothetical-protein
MGSFFASFVDWLIGSPGRFVVNLIEDNMLIFMVVVMIYATTILYAKWTLAYYLPKKMSQLAEMKTWELDELYAAWQTEKKALPWYILVPSRNEFWVKSARNAPESTKLLHFSQQKLKLSDKEKLQKIIEIQS
>NZ_CP032669.1|WP_003733191.1|579912_580380_+|PTS-sugar-transporter-subunit-IIA
MDVLEYFKEEMVRFSNEQNKEKLLAEMAEQLCEVGAVKPSYKDAVIKREKVFPTGLLTAHAGVAIPHTDSEHVIRPVVAVRILKKPVSFIEMASDNEAIDVRIVFMMALRSADEQLDMLQTLIQLIQDEEVMTTLLKAQETGDVLSAIEHFSKNN
>NZ_CP032669.1|WP_003733192.1|579282_579885_+|SIS-domain-containing-protein
MDKQAILNNIHQTWQEEANAISRLPEVTSEEALVKTVEKIAECTGKIVVAGCGTSGVAAKKLVHSFNCIERPAVFLTPSDAVHGTLGVLQKEDILILISKGGNTGELLNLIPACKTKGSTLIGVTENPDSVIAKEADIFFPVSVSKEPDPFNMLATASTMAVIASFDAVIVCLMTYMNYTKEQFSVIHPGGAVGNKLLNK
>NZ_CP032669.1|WP_003733193.1|577218_579279_+|BglG-family-transcription-antiterminator
MYLDNRSKTLFQEVIKNPNITNKQLEVKYKLSRYQISYSFQKVNEWLKWKNYPEVKRSKNGRFILEPELTALFSEKETRDPSVEYLPSENERANLILLMLLTSKEELSLAHFTTKIQVSKNTILRDLKVAQKLLPKETTVTYSRASGYQLAGSEWELRKVLTQVVSSVKEMFRGEHYFLSYSGIEKVQLMEIRRTLEEAEAMMQIKFTYEQIELLPYLLSVMFLRIRDRRLIDTAFHIDEKSLSDTREYHITDILLEKTGPVPEQERLFITLQLLTTNIFSGEILTEKLTEDLEKVVLTCLDLFEKKALVSLKNKHILIEKLLLHLKPAYYRIKYQMNLEDTLYEKFNQEFEALNFIVKEAFDPLAKFIGREIPAGEIFFISLFIGSDMIPQNDIYHKQKRAIVLCPSGVTFSKIMENILVKLFPEIHFYPTISVREYAFFKAEVDIVFSSIPLKDGENVFVVQPFMNDIEKTQLRQHVLQNLFGMGNQLTSIDKIMEVVERNADIKDPNAIRDGIIDILSANTATDENKRVKKVYLHDLITEDNIMICEDVKNYQEAIRLASQPLLLQQAITANYVKTMIDNHKFHDPYIIIGEDIAIPHAMPNAGVNRLAMSLLVVKNGVYFSETEQVHFVIVIAPVDKEQHIEALYQIVHLAENHQILDDLLENVTKEKIMQTINQLVIREDE
>NZ_CP032669.1|WP_003733194.1|576459_577110_+|transaldolase
MHLDSANLDDVKKIQASSIFKGITTNPTILVKEKCNRQTAINRILELTDKQVFVQTVGFTYEEILADARMLLTMFGKDKIAIKIPAHEAGTNVIDTLKKEDKTIQILGTAIYSADQAITAALVGADFVAPYVNRMSAANIDPFKEISQMRHFFDKKALKTQIMAASFKHSGQVMQAYESGADTVTIPYEIYSQMTNKVLAVEAIRVFNEDAVLYEK
>NZ_CP032669.1|WP_009930754.1|586149_586728_+|hypothetical-protein
MKKILVPILLLATILASCSSPNEKITKDTKISKTITIRADYKVPKDIKELEDDSANIVKVKFLQNKTIGKDGSTISEIEILTSYKGNLEKGSKVDISEPWYLSDGKYVAVENYIALDKEQEYTIFLGEKDKDTYPLSSLGYGKFGGSLKEDQAVLADFNILGEVQKFDFISENTEEVKNYQLIKEQVAGKYK
>NZ_CP032669.1|WP_003721297.1|586835_587516_+|type-1-glutamine-amidotransferase
MIIDVLQHVPHEGPGLIANWARENQHQLKIHSLFEENAHVPNDSDFLIVLGGPMGINDTAEFPWLKDERKLIKRLSEQHKPVFGVCLGAQQIAATFGSEITVNKEKEVGWFPVKRTSDKLLFFPESLNVFHWHQDTFALPTGSTRLFASEGCLNQAFLYGENIIGLQFHFEMEKAGIETILRIDEAFITPGKYVQSVEVMREKDVPEDNKQMLEAILDYLINPKTI
>NZ_CP032669.1|WP_003721298.1|587540_587900_-|hypothetical-protein
MEQILFIQTGFGVDVHGQNITKAAERAVRNAIFTNSMPGIQGLLPDGDLQNMVVNIKLALPCDADQLDEDTIRAIIPYGTVTIEKMAGGMMTTSGIFLEDKEDKNDLMYIVNASVETGY
>NZ_CP032669.1|WP_009932856.1|587906_588365_-|MarR-family-transcriptional-regulator
MNNEQNMNQQIALFYFGYKAFTETADLIIAKHSLKRLHHRILFFTARMPGLTINELLTFLEISKQALHQPLAELKERELLTIEQGRRDKRQRCIFLTSAGKELENELGAAQRKQMSEIFTNSADTDGMHFTEVMEGYAKNRPGAAFIKDFKE
>NZ_CP032669.1|WP_046335432.1|588746_590582_+|lmo0514-family-class-1-internalin
MKKALKLFLATICMFIMIYPSTAAHAEETNIVNIPDANLKTYLNGLLKQASDAPITKTQMNTIQTVTLSGSTYTDLTGLEEAGNLVTLSLNNTNIQTLEPIKNQTSLTYLTVGGDNVKDSLFVDLNGLVNLQSLSINGSEVTHNVFKTFNKLPKLTYLYAQNSMKITDISALASLPALTTLFLQFDGIDDFRPLNDFESFKNGNLKALAAFGQNTGRTNPRITLKSGKLDYNETNQTLYLPFSMMPKPLTSFDGTVAPFSKSTSASNTYLGFNDVALPSSRLSITDDGITVSGVTKEEFDNLDEIEYNARYDFPTGSYPTPPSMTSYTISSGTYDQYFDISHTLDLTADESFDYNQYDTTSEEQFLKDVHAETDDGTAVKSDFDQVVKLDVPGEYTVTLNAENAAGLKATPVTVKVTVHEKPVITSDSQISYKKETTKSVDEFLKEIHGSVTGNAVLTSDFDKVVDLNTPGEYTITLNAINDRGQKADPVTVVVTVTTSDSGHVDPVPPTPEIKPTPQEETDQTIIPEPQSETTEDSVKEDQAKDGQAKSEEKADKTSLTTKENKVEKSEKTNQPKTKALPQTGDTNKTALPIAGVMLSLAALLIFRKSKS
>NZ_CP032669.1|WP_003721301.1|590682_591114_+|universal-stress-protein
MEKYHRILVAVDGSEPAKLAFEKGLELALKLDGVLGIASIVDLRAFSPNVSYDGSLEEKAELELKTSVNEYAEKARTAGVKQVETFVAKGNPKILLSTDIPAEFQADLIICGATGMNRVEKLVLGSVSSYIMAHAICDTLIAR
>NZ_CP032669.1|WP_046335431.1|591160_592591_-|CapA-family-protein
MKKLTYVIITGLVLVFIAGAFWITNSTNQSDQKATQTEPIKKISPANVKTISSEAKKTLNSLASSGADKASTSDLKQLIKELKSYPTEKNDSGVYLQNLTACLEAVKSYTTGKTDEKTLGKVYPAFLASEQKLSAIEKTNQYDWFYAAAATNQQGLKEKGVVTLTMVGDNSFGTYPETPEHLKFDNVFQKNNGNNTYVYKNCLPWFKSDDYTVINAESAFTNATKAENKKWRIKSDPAHVAFLPASGVDAANLANNHTMDYFQVGYDDTLKAFKENNIPVFNTDAPLETTIKGMKTVLLGYDCRMSQQSPAYLERIVKDVKKYKKEDTLVIVNMHWGVEYRETPTDYQTQFGHAILDAGADIIMGSHPHRLESVEKYKDKYIVYSMGDFAFGADPTLLSRMTSMFQLRFKKEDNKIVLKDISIVPTYENSDGSTTENNYQPLPVFGDDAKKIVDELNRISKPIEGGVTEYTYFDPF
>NZ_CP032669.1|WP_003721303.1|592711_593527_-|histidine-phosphatase-family-protein
MKKNIFKLLMALCAVLLIAGCGNSTSADKKETKETKEDGTVTFYVVRHGKTMLNTTDRVQGWSDAVLTPAGEEVVKSAGKGLKDVDFSAAYSSDSGRAIQTANLILKESDKSADKEVQTDPRFREFNFGSYEGDLNENMWTDIAKSQGKTLEEWQKAGLSPKDFANSVAALDKTRVKEGENWPAEDYATIQARLKEGLTDVAKKESKNGDSNVLLVSHGLSIGALLDTIEPGYKLPAEGIKNASVTKITYKDGKFTIGDVNDLSYVEKGSK
>NZ_CP032669.1|WP_046335430.1|593879_594602_+|CRISPR-associated-endoribonuclease-Cas6
MRLKINCDFDSKIIPKDFQSKVVSLFKAGIMKSSPERYENLFGGNKHKQYTFSVYLPKPQNKVAEIQLNEANCIINFSTGDAETGIIFYNALMCLRGSKVLFGAGNHITVKNIQIVPEKKIIGKRTILRTLSPVVSRDHNRETFKNWFYSFEDEEFEPTLKRNMLPYLMDAFGEQARYDLEKLKITPISMKKVVVYCHEIHIESSVGIFELEAEAYLQKYLVENGIGTMTGSGFGMIEQF
>NZ_CP032669.1|WP_046335429.1|594617_596306_+|type-I-B-CRISPR-associated-protein-Cas8b1/Cst1
MQTEIEVRADDWLINTGLTGFLNIVGKENVRIDGQSIYFTADLLEDFETKYFNFFIQEYKETLSWYKIVSYKETMEQFRIDEFASFDEVALGNLNKYMKDVVKFYLKKANYIKVFPLIDPSANVTKWLEKLNTINLTKKQKWDEVKADIIEEVKQTYTQLDLIIDFCASEKGLQYLGAKNLIYSVINKGWSGVSFLFKQTKFIDPYLDYKTTFVDPVLEYLDTDLSKAKYNCFNCNQPIKNLKLDLSFMNDVGFDTARKTAHVWDFNNDVATCPICRLIYSCVPAGFTYVYGEGMFVNDSYGVEELHRVNERMRNSILRFNKDGINSTNTYRALVESITIEHENNRRYELADIQLVRYENEHYRFNLLSKKMLHIVNDSKGILKSLIRCGYKEGNLNINLYKEVIQHLMNNENLFSLIHKLIYYKQTSVNGLYYNMGNVSGILDINTKFLKEIEVMKNVTQSELWLAKSCGTKFKEGYVKKKSENKISGITYKLLNSLKINDKDGFMDTLLNSYSYLAMPIPDVFIKMFSNNEAFKSVGYAFMLGVGGEKTKKEDGGNTDEK

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Crispr_ID: NZ_CP032669_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP032669_3

602185-605921

Unclear

I-A

Consensus_repeat	Method
GTTTTAACTACTTATTATGAAATGTAAAT	CRISPRCasFinder
GTTTTAACTACTTATTATGAAATGTAAAT	CRT
GTTTTAACTACTTATTATGAAATGTAAAT	PILER-CR

57 spacers

cas2,cas1,cas4,cas3,cas5,cas7,cas8b2,cas6

The CRISPR arrays of NZ_CP032669_3

>merge|NZ_CP032669|3|602185-605921|CRISPRCasFinder,CRT,PILER-CR
GTTTTAACTACTTATTATGAAATGTAAATTTTTTATAAATTGTTTCTGTTTCAAAATCAAACATTAGTTTTAACTACTTATTATGAAATGTAAATGATGACAGATGCAATTTCTGCGTTACAAGCGTCTGGCGTTTTAACTACTTATTATGAAATGTAAATATGAACAGAAAGATGAGATTATTAAAAGGACTATGTTTTAACTACTTATTATGAAATGTAAATAGCTAAACAAGTTCTTGACTGCTCTTCTTAGCTCCGTTTTAACTACTTATTATGAAATGTAAATAGAACTCTTTTGATGATAACCCAATTCCTTCAAAAAGTTTTAACTACTTATTATGAAATGTAAATAAGGGAGCATAGACAGCACCTAACTTTTCTATGGTGTTTTAACTACTTATTATGAAATGTAAATGGTGTTTCTGTGTCCACTTCTCCTTCTACCTGAATGTTTTAACTACTTATTATGAAATGTAAATTGTCATTTGCATGGGCGCAATCAAAACCAATTGACCGTTTTAACTACTTATTATGAAATGTAAATTTTGATAGTGTTACTATACTAACATAGCCAAAATCACGTTTTAACTACTTATTATGAAATGTAAATTTATCCATTCCGTCATATCCCCACGCATCTGTTCCAGTTTTAACTACTTATTATGAAATGTAAATAGAGTTTCCAGCTGTAAGGCCAGATATTGATAATTTCGTTTTAACTACTTATTATGAAATGTAAATTATGAAATTATCTGCGAAGAGGGAAAACTAGACGATGTTTTAACTACTTATTATGAAATGTAAATAGCGGTTTTTCTTCTATAGAAGTAACTTGCTTTTGTGTTTTAACTACTTATTATGAAATGTAAATGTTTATAGTATGTAAAACAAACACAGGAAAATATATCGTTTTAACTACTTATTATGAAATGTAAATTAAATTGTTAAGCTTGTCAACAACCTGCAAGAACTGTTTTAACTACTTATTATGAAATGTAAATACGAAAATAGCTAAATTGGATTTACTTGAGTCTTTTTTCGTTTTAACTACTTATTATGAAATGTAAATCAAAGCAAGTACAGAAGCGTATTATGCTCTATTAGAGTGTTTTAACTACTTATTATGAAATGTAAATATTTAAGTATTAATGTTTTTAAAAAGTTTGATTTATTGTTTTAACTACTTATTATGAAATGTAAATTATCAAAAAGCTTGTGCTATTATGGAAAGTCGTTGGGAGTTTTAACTACTTATTATGAAATGTAAATTTTAATAACTATGACAGTGAATTTAAAACGAAAGCGGTTTTAACTACTTATTATGAAATGTAAATTCTGGAGAATCTGATGTTAAAATCTCTGATCATGTTGTGTTTTAACTACTTATTATGAAATGTAAATAGAAATTAAAGAAGGTAGGGCATTCGTTGCACCGGAAAGTTTTAACTACTTATTATGAAATGTAAATAAAATTAGCGTTCCAAAAATAAGACCTGTCGCAACGTTTTAACTACTTATTATGAAATGTAAATCCCGTATGGTAGAACTAAGAATACATGGGATGAATGTTTTAACTACTTATTATGAAATGTAAATATACTAAAACTTCGCTCATTTTCCGCAACTCCTTGTTTTAACTACTTATTATGAAATGTAAATTTAAGAAATATGATTGATTCTCTGGATATCACTTTGTTTTAACTACTTATTATGAAATGTAAATCCTCCACAATCACTCGGCTTTCTTCGTCTTTATCGACGTTTTAACTACTTATTATGAAATGTAAATACTTGAAGGACGTGCTTCAAAATATTTAGTTGCATGTTTTAACTACTTATTATGAAATGTAAATTTTATCTTTATCTATTTCTCCAGTAATAGAGCACGGTTTTAACTACTTATTATGAAATGTAAATACATTTTTATCTGAGAAAGGGTTTAGGGAAAATTGTTTTAACTACTTATTATGAAATGTAAATAAAAAAACAACTGCGCAAGAAGGGTATGAGCAATTGTTTTAACTACTTATTATGAAATGTAAATGTTGGACACCGTCAGCAGAGCTTATAAATCCACTGTGTTTTAACTACTTATTATGAAATGTAAATTTTTTCCATTCTTCTCGCCGATGTATTCCTTTTCTCGTTTTAACTACTTATTATGAAATGTAAATAACAAAAATACGTTATTTGTTCGATGTAATGTAAAAGTTTTAACTACTTATTATGAAATGTAAATTCAACTAACGAGGCAACAGGTGTTTTATAGCTGTAAAGGTTTTAACTACTTATTATGAAATGTAAATTGGTAAATTTTATAGGAATGTCAACACCTTGAATTTGTTTTAACTACTTATTATGAAATGTAAATCCAGAAATGGAGTGCGCGGTTGATTTTGGATTTAGCGTTTTAACTACTTATTATGAAATGTAAATAAGAACATTAGATGAACTTAAAGCGTCTGTTGAACAAGTTTTAACTACTTATTATGAAATGTAAATAAACCAGAGCCAGAAAAAGAAGTTGTGAAAGAAGAGTTTTAACTACTTATTATGAAATGTAAATGCTGTACTAGCACTAGAATCAGCGGGATAACTGACAGTTTTAACTACTTATTATGAAATGTAAATACGTCACTTGTTTTTGCCTTTGTTTTCGCCCTTTCCTGTTTTAACTACTTATTATGAAATGTAAATGTTGAAAAGCGCACCATTGTTTTAATTTTTTTAATTGTTTTAACTACTTATTATGAAATGTAAATTTTTGTCGCATAAATTCTTTGATGTGGCGGACTGACGGTTTTAACTACTTATTATGAAATGTAAATAACAGTATCATCACGTTGTTATTGCTGTCACCTGTGTTTTAACTACTTATTATGAAATGTAAATTAACCAAGCATTGCCAAAAACTCGTCTGTTGATAATGTTTTAACTACTTATTATGAAATGTAAATTTCTATTGCAGAACAGAATGAATTGTATGCACAAGGGTTTTAACTACTTATTATGAAATGTAAATTCGTTAATCATAATTGATGAAAGTCATCATGTGTTAGGTTTTAACTACTTATTATGAAATGTAAATACGGGTACCAGCTTTGATTTGCCGTTTTCAATTATTGTTTTAACTACTTATTATGAAATGTAAATTTTATCACTCCTATGCTTTTCTTATTTCTGTAAATGTTTTAACTACTTATTATGAAATGTAAATGCTTTTTTCAACAATTTTATCACCAGATGTCATTAGTTTTAACTACTTATTATGAAATGTAAATTGAGCAGTGTCACCTGTTTCCGTATCTGCTTTTTTCGTTTTAACTACTTATTATGAAATGTAAATTTAATAAATCCGATGGTGATGCCTATGTTATACGTCGTTTTAACTACTTATTATGAAATGTAAATTAAAACATCGCTTCGTTATACAATGTCTTTTTATAGTTTTAACTACTTATTATGAAATGTAAATTGTTATCTCCTGTGATGTAAAATAACCCTTCTATCGTTTTAACTACTTATTATGAAATGTAAATCAAAACAGAGAACGCGTGTTCATTATCGGACATCTTAGTTTTAACTACTTATTATGAAATGTAAATTTTTGAAATATGAGGACTTAGAAAATGAAAAAAATGTTTTAACTACTTATTATGAAATGTAAATAAAAACTATGCAATTAGCAAAGTGATTTTATGTAATTGTTTTAACTACTTATTATGAAATCATAAA

>NZ_CP032669|3|2|602185-605921|CRISPRCasFinder
GTTTTAACTACTTATTATGAAATGTAAAT	TTTTTATAAATTGTTTCTGTTTCAAAATCAAACATTA
GTTTTAACTACTTATTATGAAATGTAAAT	GATGACAGATGCAATTTCTGCGTTACAAGCGTCTGGC
GTTTTAACTACTTATTATGAAATGTAAAT	ATGAACAGAAAGATGAGATTATTAAAAGGACTAT
GTTTTAACTACTTATTATGAAATGTAAAT	AGCTAAACAAGTTCTTGACTGCTCTTCTTAGCTCC
GTTTTAACTACTTATTATGAAATGTAAAT	AGAACTCTTTTGATGATAACCCAATTCCTTCAAAAA
GTTTTAACTACTTATTATGAAATGTAAAT	AAGGGAGCATAGACAGCACCTAACTTTTCTATGGT
GTTTTAACTACTTATTATGAAATGTAAAT	GGTGTTTCTGTGTCCACTTCTCCTTCTACCTGAAT
GTTTTAACTACTTATTATGAAATGTAAAT	TGTCATTTGCATGGGCGCAATCAAAACCAATTGACC
GTTTTAACTACTTATTATGAAATGTAAAT	TTTGATAGTGTTACTATACTAACATAGCCAAAATCAC
GTTTTAACTACTTATTATGAAATGTAAAT	TTATCCATTCCGTCATATCCCCACGCATCTGTTCCA
GTTTTAACTACTTATTATGAAATGTAAAT	AGAGTTTCCAGCTGTAAGGCCAGATATTGATAATTTC
GTTTTAACTACTTATTATGAAATGTAAAT	TATGAAATTATCTGCGAAGAGGGAAAACTAGACGAT
GTTTTAACTACTTATTATGAAATGTAAAT	AGCGGTTTTTCTTCTATAGAAGTAACTTGCTTTTGT
GTTTTAACTACTTATTATGAAATGTAAAT	GTTTATAGTATGTAAAACAAACACAGGAAAATATATC
GTTTTAACTACTTATTATGAAATGTAAAT	TAAATTGTTAAGCTTGTCAACAACCTGCAAGAACT
GTTTTAACTACTTATTATGAAATGTAAAT	ACGAAAATAGCTAAATTGGATTTACTTGAGTCTTTTTTC
GTTTTAACTACTTATTATGAAATGTAAAT	CAAAGCAAGTACAGAAGCGTATTATGCTCTATTAGAGT
GTTTTAACTACTTATTATGAAATGTAAAT	ATTTAAGTATTAATGTTTTTAAAAAGTTTGATTTATT
GTTTTAACTACTTATTATGAAATGTAAAT	TATCAAAAAGCTTGTGCTATTATGGAAAGTCGTTGGGA
GTTTTAACTACTTATTATGAAATGTAAAT	TTTAATAACTATGACAGTGAATTTAAAACGAAAGCG
GTTTTAACTACTTATTATGAAATGTAAAT	TCTGGAGAATCTGATGTTAAAATCTCTGATCATGTTGT
GTTTTAACTACTTATTATGAAATGTAAAT	AGAAATTAAAGAAGGTAGGGCATTCGTTGCACCGGAAA
GTTTTAACTACTTATTATGAAATGTAAAT	AAAATTAGCGTTCCAAAAATAAGACCTGTCGCAAC
GTTTTAACTACTTATTATGAAATGTAAAT	CCCGTATGGTAGAACTAAGAATACATGGGATGAAT
GTTTTAACTACTTATTATGAAATGTAAAT	ATACTAAAACTTCGCTCATTTTCCGCAACTCCTT
GTTTTAACTACTTATTATGAAATGTAAAT	TTAAGAAATATGATTGATTCTCTGGATATCACTTT
GTTTTAACTACTTATTATGAAATGTAAAT	CCTCCACAATCACTCGGCTTTCTTCGTCTTTATCGAC
GTTTTAACTACTTATTATGAAATGTAAAT	ACTTGAAGGACGTGCTTCAAAATATTTAGTTGCAT
GTTTTAACTACTTATTATGAAATGTAAAT	TTTATCTTTATCTATTTCTCCAGTAATAGAGCACG
GTTTTAACTACTTATTATGAAATGTAAAT	ACATTTTTATCTGAGAAAGGGTTTAGGGAAAATT
GTTTTAACTACTTATTATGAAATGTAAAT	AAAAAAACAACTGCGCAAGAAGGGTATGAGCAATT
GTTTTAACTACTTATTATGAAATGTAAAT	GTTGGACACCGTCAGCAGAGCTTATAAATCCACTGT
GTTTTAACTACTTATTATGAAATGTAAAT	TTTTTCCATTCTTCTCGCCGATGTATTCCTTTTCTC
GTTTTAACTACTTATTATGAAATGTAAAT	AACAAAAATACGTTATTTGTTCGATGTAATGTAAAA
GTTTTAACTACTTATTATGAAATGTAAAT	TCAACTAACGAGGCAACAGGTGTTTTATAGCTGTAAAG
GTTTTAACTACTTATTATGAAATGTAAAT	TGGTAAATTTTATAGGAATGTCAACACCTTGAATTT
GTTTTAACTACTTATTATGAAATGTAAAT	CCAGAAATGGAGTGCGCGGTTGATTTTGGATTTAGC
GTTTTAACTACTTATTATGAAATGTAAAT	AAGAACATTAGATGAACTTAAAGCGTCTGTTGAACAA
GTTTTAACTACTTATTATGAAATGTAAAT	AAACCAGAGCCAGAAAAAGAAGTTGTGAAAGAAGA
GTTTTAACTACTTATTATGAAATGTAAAT	GCTGTACTAGCACTAGAATCAGCGGGATAACTGACA
GTTTTAACTACTTATTATGAAATGTAAAT	ACGTCACTTGTTTTTGCCTTTGTTTTCGCCCTTTCCT
GTTTTAACTACTTATTATGAAATGTAAAT	GTTGAAAAGCGCACCATTGTTTTAATTTTTTTAATT
GTTTTAACTACTTATTATGAAATGTAAAT	TTTTGTCGCATAAATTCTTTGATGTGGCGGACTGACG
GTTTTAACTACTTATTATGAAATGTAAAT	AACAGTATCATCACGTTGTTATTGCTGTCACCTGT
GTTTTAACTACTTATTATGAAATGTAAAT	TAACCAAGCATTGCCAAAAACTCGTCTGTTGATAAT
GTTTTAACTACTTATTATGAAATGTAAAT	TTCTATTGCAGAACAGAATGAATTGTATGCACAAGG
GTTTTAACTACTTATTATGAAATGTAAAT	TCGTTAATCATAATTGATGAAAGTCATCATGTGTTAG
GTTTTAACTACTTATTATGAAATGTAAAT	ACGGGTACCAGCTTTGATTTGCCGTTTTCAATTATT
GTTTTAACTACTTATTATGAAATGTAAAT	TTTATCACTCCTATGCTTTTCTTATTTCTGTAAAT
GTTTTAACTACTTATTATGAAATGTAAAT	GCTTTTTTCAACAATTTTATCACCAGATGTCATTA
GTTTTAACTACTTATTATGAAATGTAAAT	TGAGCAGTGTCACCTGTTTCCGTATCTGCTTTTTTC
GTTTTAACTACTTATTATGAAATGTAAAT	TTAATAAATCCGATGGTGATGCCTATGTTATACGTC
GTTTTAACTACTTATTATGAAATGTAAAT	TAAAACATCGCTTCGTTATACAATGTCTTTTTATA
GTTTTAACTACTTATTATGAAATGTAAAT	TGTTATCTCCTGTGATGTAAAATAACCCTTCTATC
GTTTTAACTACTTATTATGAAATGTAAAT	CAAAACAGAGAACGCGTGTTCATTATCGGACATCTTA
GTTTTAACTACTTATTATGAAATGTAAAT	TTTTGAAATATGAGGACTTAGAAAATGAAAAAAAT
GTTTTAACTACTTATTATGAAATGTAAAT	AAAAACTATGCAATTAGCAAAGTGATTTTATGTAATT
GTTTTAACTACTTATTATGAAATCATAAA

>NZ_CP032669|3|3|602185-605921|CRT
GTTTTAACTACTTATTATGAAATGTAAAT	TTTTTATAAATTGTTTCTGTTTCAAAATCAAACATTA
GTTTTAACTACTTATTATGAAATGTAAAT	GATGACAGATGCAATTTCTGCGTTACAAGCGTCTGGC
GTTTTAACTACTTATTATGAAATGTAAAT	ATGAACAGAAAGATGAGATTATTAAAAGGACTAT
GTTTTAACTACTTATTATGAAATGTAAAT	AGCTAAACAAGTTCTTGACTGCTCTTCTTAGCTCC
GTTTTAACTACTTATTATGAAATGTAAAT	AGAACTCTTTTGATGATAACCCAATTCCTTCAAAAA
GTTTTAACTACTTATTATGAAATGTAAAT	AAGGGAGCATAGACAGCACCTAACTTTTCTATGGT
GTTTTAACTACTTATTATGAAATGTAAAT	GGTGTTTCTGTGTCCACTTCTCCTTCTACCTGAAT
GTTTTAACTACTTATTATGAAATGTAAAT	TGTCATTTGCATGGGCGCAATCAAAACCAATTGACC
GTTTTAACTACTTATTATGAAATGTAAAT	TTTGATAGTGTTACTATACTAACATAGCCAAAATCAC
GTTTTAACTACTTATTATGAAATGTAAAT	TTATCCATTCCGTCATATCCCCACGCATCTGTTCCA
GTTTTAACTACTTATTATGAAATGTAAAT	AGAGTTTCCAGCTGTAAGGCCAGATATTGATAATTTC
GTTTTAACTACTTATTATGAAATGTAAAT	TATGAAATTATCTGCGAAGAGGGAAAACTAGACGAT
GTTTTAACTACTTATTATGAAATGTAAAT	AGCGGTTTTTCTTCTATAGAAGTAACTTGCTTTTGT
GTTTTAACTACTTATTATGAAATGTAAAT	GTTTATAGTATGTAAAACAAACACAGGAAAATATATC
GTTTTAACTACTTATTATGAAATGTAAAT	TAAATTGTTAAGCTTGTCAACAACCTGCAAGAACT
GTTTTAACTACTTATTATGAAATGTAAAT	ACGAAAATAGCTAAATTGGATTTACTTGAGTCTTTTTTC
GTTTTAACTACTTATTATGAAATGTAAAT	CAAAGCAAGTACAGAAGCGTATTATGCTCTATTAGAGT
GTTTTAACTACTTATTATGAAATGTAAAT	ATTTAAGTATTAATGTTTTTAAAAAGTTTGATTTATT
GTTTTAACTACTTATTATGAAATGTAAAT	TATCAAAAAGCTTGTGCTATTATGGAAAGTCGTTGGGA
GTTTTAACTACTTATTATGAAATGTAAAT	TTTAATAACTATGACAGTGAATTTAAAACGAAAGCG
GTTTTAACTACTTATTATGAAATGTAAAT	TCTGGAGAATCTGATGTTAAAATCTCTGATCATGTTGT
GTTTTAACTACTTATTATGAAATGTAAAT	AGAAATTAAAGAAGGTAGGGCATTCGTTGCACCGGAAA
GTTTTAACTACTTATTATGAAATGTAAAT	AAAATTAGCGTTCCAAAAATAAGACCTGTCGCAAC
GTTTTAACTACTTATTATGAAATGTAAAT	CCCGTATGGTAGAACTAAGAATACATGGGATGAAT
GTTTTAACTACTTATTATGAAATGTAAAT	ATACTAAAACTTCGCTCATTTTCCGCAACTCCTT
GTTTTAACTACTTATTATGAAATGTAAAT	TTAAGAAATATGATTGATTCTCTGGATATCACTTT
GTTTTAACTACTTATTATGAAATGTAAAT	CCTCCACAATCACTCGGCTTTCTTCGTCTTTATCGAC
GTTTTAACTACTTATTATGAAATGTAAAT	ACTTGAAGGACGTGCTTCAAAATATTTAGTTGCAT
GTTTTAACTACTTATTATGAAATGTAAAT	TTTATCTTTATCTATTTCTCCAGTAATAGAGCACG
GTTTTAACTACTTATTATGAAATGTAAAT	ACATTTTTATCTGAGAAAGGGTTTAGGGAAAATT
GTTTTAACTACTTATTATGAAATGTAAAT	AAAAAAACAACTGCGCAAGAAGGGTATGAGCAATT
GTTTTAACTACTTATTATGAAATGTAAAT	GTTGGACACCGTCAGCAGAGCTTATAAATCCACTGT
GTTTTAACTACTTATTATGAAATGTAAAT	TTTTTCCATTCTTCTCGCCGATGTATTCCTTTTCTC
GTTTTAACTACTTATTATGAAATGTAAAT	AACAAAAATACGTTATTTGTTCGATGTAATGTAAAA
GTTTTAACTACTTATTATGAAATGTAAAT	TCAACTAACGAGGCAACAGGTGTTTTATAGCTGTAAAG
GTTTTAACTACTTATTATGAAATGTAAAT	TGGTAAATTTTATAGGAATGTCAACACCTTGAATTT
GTTTTAACTACTTATTATGAAATGTAAAT	CCAGAAATGGAGTGCGCGGTTGATTTTGGATTTAGC
GTTTTAACTACTTATTATGAAATGTAAAT	AAGAACATTAGATGAACTTAAAGCGTCTGTTGAACAA
GTTTTAACTACTTATTATGAAATGTAAAT	AAACCAGAGCCAGAAAAAGAAGTTGTGAAAGAAGA
GTTTTAACTACTTATTATGAAATGTAAAT	GCTGTACTAGCACTAGAATCAGCGGGATAACTGACA
GTTTTAACTACTTATTATGAAATGTAAAT	ACGTCACTTGTTTTTGCCTTTGTTTTCGCCCTTTCCT
GTTTTAACTACTTATTATGAAATGTAAAT	GTTGAAAAGCGCACCATTGTTTTAATTTTTTTAATT
GTTTTAACTACTTATTATGAAATGTAAAT	TTTTGTCGCATAAATTCTTTGATGTGGCGGACTGACG
GTTTTAACTACTTATTATGAAATGTAAAT	AACAGTATCATCACGTTGTTATTGCTGTCACCTGT
GTTTTAACTACTTATTATGAAATGTAAAT	TAACCAAGCATTGCCAAAAACTCGTCTGTTGATAAT
GTTTTAACTACTTATTATGAAATGTAAAT	TTCTATTGCAGAACAGAATGAATTGTATGCACAAGG
GTTTTAACTACTTATTATGAAATGTAAAT	TCGTTAATCATAATTGATGAAAGTCATCATGTGTTAG
GTTTTAACTACTTATTATGAAATGTAAAT	ACGGGTACCAGCTTTGATTTGCCGTTTTCAATTATT
GTTTTAACTACTTATTATGAAATGTAAAT	TTTATCACTCCTATGCTTTTCTTATTTCTGTAAAT
GTTTTAACTACTTATTATGAAATGTAAAT	GCTTTTTTCAACAATTTTATCACCAGATGTCATTA
GTTTTAACTACTTATTATGAAATGTAAAT	TGAGCAGTGTCACCTGTTTCCGTATCTGCTTTTTTC
GTTTTAACTACTTATTATGAAATGTAAAT	TTAATAAATCCGATGGTGATGCCTATGTTATACGTC
GTTTTAACTACTTATTATGAAATGTAAAT	TAAAACATCGCTTCGTTATACAATGTCTTTTTATA
GTTTTAACTACTTATTATGAAATGTAAAT	TGTTATCTCCTGTGATGTAAAATAACCCTTCTATC
GTTTTAACTACTTATTATGAAATGTAAAT	CAAAACAGAGAACGCGTGTTCATTATCGGACATCTTA
GTTTTAACTACTTATTATGAAATGTAAAT	TTTTGAAATATGAGGACTTAGAAAATGAAAAAAAT
GTTTTAACTACTTATTATGAAATGTAAAT	AAAAACTATGCAATTAGCAAAGTGATTTTATGTAATT
GTTTTAACTACTTATTATGAAATCATAAA

>NZ_CP032669|3|2|602380-605855|PILER-CR
GTTTTAACTACTTATTATGAAATGTAAAT	AGCTAAACAAGTTCTTGACTGCTCTTCTTAGCTCC
GTTTTAACTACTTATTATGAAATGTAAAT	AGAACTCTTTTGATGATAACCCAATTCCTTCAAAAA
GTTTTAACTACTTATTATGAAATGTAAAT	AAGGGAGCATAGACAGCACCTAACTTTTCTATGGT
GTTTTAACTACTTATTATGAAATGTAAAT	GGTGTTTCTGTGTCCACTTCTCCTTCTACCTGAAT
GTTTTAACTACTTATTATGAAATGTAAAT	TGTCATTTGCATGGGCGCAATCAAAACCAATTGACC
GTTTTAACTACTTATTATGAAATGTAAAT	TTTGATAGTGTTACTATACTAACATAGCCAAAATCAC
GTTTTAACTACTTATTATGAAATGTAAAT	TTATCCATTCCGTCATATCCCCACGCATCTGTTCCA
GTTTTAACTACTTATTATGAAATGTAAAT	AGAGTTTCCAGCTGTAAGGCCAGATATTGATAATTTC
GTTTTAACTACTTATTATGAAATGTAAAT	TATGAAATTATCTGCGAAGAGGGAAAACTAGACGAT
GTTTTAACTACTTATTATGAAATGTAAAT	AGCGGTTTTTCTTCTATAGAAGTAACTTGCTTTTGT
GTTTTAACTACTTATTATGAAATGTAAAT	GTTTATAGTATGTAAAACAAACACAGGAAAATATATC
GTTTTAACTACTTATTATGAAATGTAAAT	TAAATTGTTAAGCTTGTCAACAACCTGCAAGAACT
GTTTTAACTACTTATTATGAAATGTAAAT	ACGAAAATAGCTAAATTGGATTTACTTGAGTCTTTTTTC
GTTTTAACTACTTATTATGAAATGTAAAT	CAAAGCAAGTACAGAAGCGTATTATGCTCTATTAGAGT
GTTTTAACTACTTATTATGAAATGTAAAT	ATTTAAGTATTAATGTTTTTAAAAAGTTTGATTTATT
GTTTTAACTACTTATTATGAAATGTAAAT	TATCAAAAAGCTTGTGCTATTATGGAAAGTCGTTGGGA
GTTTTAACTACTTATTATGAAATGTAAAT	TTTAATAACTATGACAGTGAATTTAAAACGAAAGCG
GTTTTAACTACTTATTATGAAATGTAAAT	TCTGGAGAATCTGATGTTAAAATCTCTGATCATGTTGT
GTTTTAACTACTTATTATGAAATGTAAAT	AGAAATTAAAGAAGGTAGGGCATTCGTTGCACCGGAAA
GTTTTAACTACTTATTATGAAATGTAAAT	AAAATTAGCGTTCCAAAAATAAGACCTGTCGCAAC
GTTTTAACTACTTATTATGAAATGTAAAT	CCCGTATGGTAGAACTAAGAATACATGGGATGAAT
GTTTTAACTACTTATTATGAAATGTAAAT	ATACTAAAACTTCGCTCATTTTCCGCAACTCCTT
GTTTTAACTACTTATTATGAAATGTAAAT	TTAAGAAATATGATTGATTCTCTGGATATCACTTT
GTTTTAACTACTTATTATGAAATGTAAAT	CCTCCACAATCACTCGGCTTTCTTCGTCTTTATCGAC
GTTTTAACTACTTATTATGAAATGTAAAT	ACTTGAAGGACGTGCTTCAAAATATTTAGTTGCAT
GTTTTAACTACTTATTATGAAATGTAAAT	TTTATCTTTATCTATTTCTCCAGTAATAGAGCACG
GTTTTAACTACTTATTATGAAATGTAAAT	ACATTTTTATCTGAGAAAGGGTTTAGGGAAAATT
GTTTTAACTACTTATTATGAAATGTAAAT	AAAAAAACAACTGCGCAAGAAGGGTATGAGCAATT
GTTTTAACTACTTATTATGAAATGTAAAT	GTTGGACACCGTCAGCAGAGCTTATAAATCCACTGT
GTTTTAACTACTTATTATGAAATGTAAAT	TTTTTCCATTCTTCTCGCCGATGTATTCCTTTTCTC
GTTTTAACTACTTATTATGAAATGTAAAT	AACAAAAATACGTTATTTGTTCGATGTAATGTAAAA
GTTTTAACTACTTATTATGAAATGTAAAT	TCAACTAACGAGGCAACAGGTGTTTTATAGCTGTAAAG
GTTTTAACTACTTATTATGAAATGTAAAT	TGGTAAATTTTATAGGAATGTCAACACCTTGAATTT
GTTTTAACTACTTATTATGAAATGTAAAT	CCAGAAATGGAGTGCGCGGTTGATTTTGGATTTAGC
GTTTTAACTACTTATTATGAAATGTAAAT	AAGAACATTAGATGAACTTAAAGCGTCTGTTGAACAA
GTTTTAACTACTTATTATGAAATGTAAAT	AAACCAGAGCCAGAAAAAGAAGTTGTGAAAGAAGA
GTTTTAACTACTTATTATGAAATGTAAAT	GCTGTACTAGCACTAGAATCAGCGGGATAACTGACA
GTTTTAACTACTTATTATGAAATGTAAAT	ACGTCACTTGTTTTTGCCTTTGTTTTCGCCCTTTCCT
GTTTTAACTACTTATTATGAAATGTAAAT	GTTGAAAAGCGCACCATTGTTTTAATTTTTTTAATT
GTTTTAACTACTTATTATGAAATGTAAAT	TTTTGTCGCATAAATTCTTTGATGTGGCGGACTGACG
GTTTTAACTACTTATTATGAAATGTAAAT	AACAGTATCATCACGTTGTTATTGCTGTCACCTGT
GTTTTAACTACTTATTATGAAATGTAAAT	TAACCAAGCATTGCCAAAAACTCGTCTGTTGATAAT
GTTTTAACTACTTATTATGAAATGTAAAT	TTCTATTGCAGAACAGAATGAATTGTATGCACAAGG
GTTTTAACTACTTATTATGAAATGTAAAT	TCGTTAATCATAATTGATGAAAGTCATCATGTGTTAG
GTTTTAACTACTTATTATGAAATGTAAAT	ACGGGTACCAGCTTTGATTTGCCGTTTTCAATTATT
GTTTTAACTACTTATTATGAAATGTAAAT	TTTATCACTCCTATGCTTTTCTTATTTCTGTAAAT
GTTTTAACTACTTATTATGAAATGTAAAT	GCTTTTTTCAACAATTTTATCACCAGATGTCATTA
GTTTTAACTACTTATTATGAAATGTAAAT	TGAGCAGTGTCACCTGTTTCCGTATCTGCTTTTTTC
GTTTTAACTACTTATTATGAAATGTAAAT	TTAATAAATCCGATGGTGATGCCTATGTTATACGTC
GTTTTAACTACTTATTATGAAATGTAAAT	TAAAACATCGCTTCGTTATACAATGTCTTTTTATA
GTTTTAACTACTTATTATGAAATGTAAAT	TGTTATCTCCTGTGATGTAAAATAACCCTTCTATC
GTTTTAACTACTTATTATGAAATGTAAAT	CAAAACAGAGAACGCGTGTTCATTATCGGACATCTTA
GTTTTAACTACTTATTATGAAATGTAAAT	TTTTGAAATATGAGGACTTAGAAAATGAAAAAAAT
GTTTTAACTACTTATTATGAAATGTAAAT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP032669.1\|WP_009925355.1\|600213_600702_+\|CRISPR-associated-protein-Cas4	cas4	pfam01930_cas4_CAS-I	gnl\|CDD\|366863
NZ_CP032669.1\|WP_003721310.1\|601708_601987_+\|CRISPR-associated-endonuclease-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|187856
NZ_CP032669.1\|WP_003726690.1\|610610_611363_+\|MurR/RpiR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224651
NZ_CP032669.1\|WP_003721307.1\|597142_597925_+\|type-I-B-CRISPR-associated-protein-Cas5	cas5	cd09658_cas5_CAS-I-B	gnl\|CDD\|273860
NZ_CP032669.1\|WP_045131588.1\|608055_609060_+\|ROK-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224851
NZ_CP032669.1\|WP_077918557.1\|600705_601704_+\|type-I-B-CRISPR-associated-endonuclease-Cas1	cas1	cd09722_cas1_CAS-I-B	gnl\|CDD\|274695
NZ_CP032669.1\|WP_031671650.1\|611958_613620_-\|SulP-family-inorganic-anion-transporter	unknown	unknown	gnl\|CDD\|223732
NZ_CP032669.1\|WP_046335430.1\|593879_594602_+\|CRISPR-associated-endoribonuclease-Cas6	cas6	pfam01881_cas6_CAS-I:CAS-III	gnl\|CDD\|273848
NZ_CP032669.1\|WP_003721321.1\|616222_617698_+\|membrane-protein	unknown	unknown	unknown
NZ_CP032669.1\|WP_046335431.1\|591160_592591_-\|CapA-family-protein	unknown	unknown	gnl\|CDD\|225399
NZ_CP032669.1\|WP_003733179.1\|613875_615207_+\|DUF1254-domain-containing-protein	unknown	unknown	gnl\|CDD\|227659
NZ_CP032669.1\|WP_003721303.1\|592711_593527_-\|histidine-phosphatase-family-protein	unknown	unknown	gnl\|CDD\|223483
NZ_CP032669.1\|WP_046335428.1\|606508_607924_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|129794
NZ_CP032669.1\|WP_003721320.1\|615252_615993_-\|MerR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|133381
NZ_CP032669.1\|WP_014600555.1\|611469_611913_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP032669.1\|WP_003721306.1\|596295_597165_+\|type-I-B-CRISPR-associated-protein-Cas7/Cst2/DevR	cas7	cd09687_cas7_CAS-I-B	gnl\|CDD\|274215
NZ_CP032669.1\|WP_003721315.1\|609091_610408_-\|6-phospho-beta-glucosidase	unknown	unknown	gnl\|CDD\|133432
NZ_CP032669.1\|WP_046335429.1\|594617_596306_+\|type-I-B-CRISPR-associated-protein-Cas8b1/Cst1	cas8b2	cd09754_cas8b2_CAS-I-B	gnl\|CDD\|187884
NZ_CP032669.1\|WP_039120367.1\|597992_600200_+\|CRISPR-associated-helicase/endonuclease-Cas3	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|224124
NZ_CP032669.1\|WP_014601725.1\|605993_606362_-\|DUF1304-domain-containing-protein	unknown	unknown	gnl\|CDD\|226282

Protein	Function_ID	Function_description	E-value
NZ_CP032669.1\|WP_009925355.1\|600213_600702_+\|CRISPR-associated-protein-Cas4	gnl\|CDD\|366863	pfam01930, Cas_Cas4, Domain of unknown function DUF83. This domain has no known function. The domain contains three conserved cysteines at its C-terminus.	3.69311e-59
NZ_CP032669.1\|WP_003721310.1\|601708_601987_+\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|187856	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas2 is present in majority of CRISPR/Cas systems along with Cas1; RNAse specific to U-rich regions; Possesses an RRM/ferredoxin fold.	5.1393e-30
NZ_CP032669.1\|WP_003726690.1\|610610_611363_+\|MurR/RpiR-family-transcriptional-regulator	gnl\|CDD\|224651	COG1737, RpiR, Transcriptional regulators [Transcription].	7.01666e-64
NZ_CP032669.1\|WP_003721307.1\|597142_597925_+\|type-I-B-CRISPR-associated-protein-Cas5	gnl\|CDD\|273860	TIGR01895, conserved_hypothetical_protein, CRISPR-associated protein Cas5, subtype I-B/TNEAP. CRISPR is a term for Clustered Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR associated) proteins. This family is represented by TM1800 from Thermotoga maritima. It is related to TIGR01868 (CRISPR-associated protein, CT1976 family).	1.37797e-23
NZ_CP032669.1\|WP_045131588.1\|608055_609060_+\|ROK-family-transcriptional-regulator	gnl\|CDD\|224851	COG1940, NagC, Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism].	1.15304e-20
NZ_CP032669.1\|WP_077918557.1\|600705_601704_+\|type-I-B-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|274695	TIGR03641, cas1_HMARI, CRISPR-associated endonuclease Cas1, subtype I-B/HMARI/TNEAP. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes Cas1 subgroup that includes Cas1 proteins of the related HMARI and TNEAP subtypes of CRISPR/Cas system.	2.64782e-164
NZ_CP032669.1\|WP_031671650.1\|611958_613620_-\|SulP-family-inorganic-anion-transporter	gnl\|CDD\|223732	COG0659, SUL1, Sulfate permease and related transporters (MFS superfamily) [Inorganic ion transport and metabolism].	1.06019e-147
NZ_CP032669.1\|WP_046335430.1\|593879_594602_+\|CRISPR-associated-endoribonuclease-Cas6	gnl\|CDD\|273848	TIGR01877, CRISPR-associated_endoribonuclease_Cas6_1, CRISPR-associated endoribonuclease Cas6. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This broadly distributed, highly divergent Cas family is now characterized as an endoribonuclease that generates guide RNAs for host defense against phage and other invaders. The family contains a C-terminal motif GXGXXXXXGXG, where the each X between two Gly is hydrophobic and the spacer XXXXX contains (usually) one Arg or Lys. The seed alignment for the current version of this model has gappy columns removed. Members of this protein family are found associated with several different CRISPR/cas system subtypes, and consequently we designate this family Cas6.	2.71791e-32
NZ_CP032669.1\|WP_046335431.1\|591160_592591_-\|CapA-family-protein	gnl\|CDD\|225399	COG2843, PgsA, Putative enzyme of poly-gamma-glutamate biosynthesis (capsule formation) [Cell envelope biogenesis, outer membrane].	2.6363e-100
NZ_CP032669.1\|WP_003733179.1\|613875_615207_+\|DUF1254-domain-containing-protein	gnl\|CDD\|227659	COG5361, COG5361, Uncharacterized conserved protein [Function unknown].	5.0797e-74
NZ_CP032669.1\|WP_003721303.1\|592711_593527_-\|histidine-phosphatase-family-protein	gnl\|CDD\|223483	COG0406, phoE, Broad specificity phosphatase PhoE and related phosphatases [General function prediction only].	5.01016e-50
NZ_CP032669.1\|WP_046335428.1\|606508_607924_+\|MFS-transporter	gnl\|CDD\|129794	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. [Cellular processes, Toxin production and resistance, Transport and binding proteins, Other].	2.94161e-80
NZ_CP032669.1\|WP_003721320.1\|615252_615993_-\|MerR-family-transcriptional-regulator	gnl\|CDD\|133381	cd01106, HTH_TipAL-Mta, Helix-Turn-Helix DNA binding domain of the transcription regulators TipAL, Mta, and SkgA. Helix-turn-helix (HTH) TipAL, Mta, and SkgA transcription regulators, and related proteins, N-terminal domain. TipAL regulates resistance to and activation by numerous cyclic thiopeptide antibiotics, such as thiostrepton. Mta is a global transcriptional regulator; the N-terminal DNA-binding domain of Mta interacts directly with the promoters of mta, bmr, blt, and ydfK, and induces transcription of these multidrug-efflux transport genes. SkgA has been shown to control stationary-phase expression of catalase-peroxidase in Caulobacter crescentus. These proteins are comprised of distinct domains that harbor an N-terminal active (DNA-binding) site and a regulatory (effector-binding) site. The conserved N-terminal domain of these transcription regulators contains winged HTH motifs that mediate DNA binding. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. Unique to this family, is a TipAL-like, lineage specific Bacilli subgroup, which has five conserved cysteines in the C-terminus of the protein.	2.56491e-51
NZ_CP032669.1\|WP_003721306.1\|596295_597165_+\|type-I-B-CRISPR-associated-protein-Cas7/Cst2/DevR	gnl\|CDD\|274215	TIGR02585, conserved_protein, CRISPR-associated protein Cas7/Cst2/DevR, subtype I-B/TNEAP. CRISPR is a term for Clustered Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR associated) proteins. This clade is a member of the DevR family (TIGR01875) and includes the DevR protein of Myxococcus xanthus, a protein whose expression appears to be regulated through a number of means, including both location and autorepression; DevR mutants are incapable of fruiting body development.	1.33672e-55
NZ_CP032669.1\|WP_003721315.1\|609091_610408_-\|6-phospho-beta-glucosidase	gnl\|CDD\|133432	cd05296, GH4_P_beta_glucosidase, Glycoside Hydrolases Family 4; Phospho-beta-glucosidase. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases such as the phospho-beta-glucosidases. Other organisms (such as archaea and Thermotoga maritima ) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. The 6-phospho-beta-glucosidase from Thermotoga maritima hydrolylzes cellobiose 6-phosphate (6P) into glucose-6P and glucose, in an NAD+ and Mn2+ dependent fashion. The Escherichia coli 6-phospho-beta-glucosidase (also called celF) hydrolyzes a variety of phospho-beta-glucosides including cellobiose-6P, salicin-6P, arbutin-6P, and gentobiose-6P. Phospho-beta-glucosidases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.	0
NZ_CP032669.1\|WP_046335429.1\|594617_596306_+\|type-I-B-CRISPR-associated-protein-Cas8b1/Cst1	gnl\|CDD\|187884	cd09754, Cas8a1_I-A, CRISPR/Cas system-associated protein Cas8a1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Large proteins, some contain Zn-finger domain; signature gene for I-A subtype; also known as CXXC_CXXC family.	6.40364e-26
NZ_CP032669.1\|WP_039120367.1\|597992_600200_+\|CRISPR-associated-helicase/endonuclease-Cas3	gnl\|CDD\|224124	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms].	1.50319e-61
NZ_CP032669.1\|WP_014601725.1\|605993_606362_-\|DUF1304-domain-containing-protein	gnl\|CDD\|226282	COG3759, COG3759, Predicted membrane protein [Function unknown].	2.99459e-41

>NZ_CP032669.1|WP_003721310.1|601708_601987_+|CRISPR-associated-endonuclease-Cas2
MYVILIYDISIENGGAKVWRNVFKICKKYLTHVQKSVFEGEITPALLVKLRMELDKYIRDDQDSVIVFSSRQQRWLEKEFWGLTDEKTSNFF
>NZ_CP032669.1|WP_077918557.1|600705_601704_+|type-I-B-CRISPR-associated-endonuclease-Cas1
MNKIESYYLFSDGELKRKDNVIRLTAPDGRFKDLKVELTRDIFLFGEVTMNTKGLNYIGQLGIPVHIFNYYGFYSGSYYPRETNVSGQLLISQVEHYTDTEKRQLIACQFIEAASFNLLRNLKYYKQRGKDVSNEIDEIKFLRKSICKMNDIPSLMGIEGNIRKVYYEAWQKIINQKFDFEKRVKRPPDNMVNTLISYVNSLVYSSCLTEIYKTQLNPVISYLHSAGERRFSLCLDVAEIFKPLIADRIIFSLLNKNIITEDDFEKEANFCYMKKAARQKVLQAYDLRMKETIKHRDLGRNVSYRHLIRLECYKLVKHLMNDKEYEAFKIWW
>NZ_CP032669.1|WP_009925355.1|600213_600702_+|CRISPR-associated-protein-Cas4
MRISGTHVYYYFVCKRKLWCFSKEIRMEHLDENVQLGKLLDESSYNREKGQVMIDETVNIDFIKDWKVLHEVKKSKAIEEAGIWQLKYYMYFLKQKGIIIEKGVVDYPKLRQRETIFLTTEDERKIEKILVDIEITTSSLKPPTIIDKPLCKKCAYYEYCYI
>NZ_CP032669.1|WP_039120367.1|597992_600200_+|CRISPR-associated-helicase/endonuclease-Cas3
MHKYLAKSNPEETIQEHTDNLLKNYQRLKKLYPAVEIDWYLLELVCLLHDLGKMNLLFQTKLGNASGKGKEIPHGYLSVAFVPDSKLEEMGYSEDEIKVVYQAIARHHERKYDFSDSEWKKEIIKLEEQWAGFIYSQLGGNAEYSSEVEMLYFYPGSRIFEGNSAADAETFKKYVLLKGLLNRIDFAASGGIDVELENDFLMDSMEVQLSHFKAENPEADWNALQKYMMQHQNENIVVIAETGMGKTEAGLLWLGNNKGFFTLPLRAAINAIYERITKNIVTTNQAERVGLLHSETYSQYLLHEGNAEMDIDEYYTRTRQMSLPITICTLDQLFDFVFRYAGFEHKLATLSYSKVIIDEIQMYSSDLLAYLILGLSYIDKFGGKFCIMTATLPGIVTDLLLENGVDFVQPEDKFVSSRIRHSMEMVHTEIESEFIKPFFNNNRILVICNTISKAKKIYSELKEHFQGEEIHLIHSQFIKKDRSAKEDAIFKDGQKDSTKKCIWVATQVVEASLDIDFDLLFTELSDVNGLFQRMGRCYRNRALDVDTNVYVFDGGAKVCSGIGTFIDKLIFENSKTILNEHAGVLTEEKKMELVERVYSTEALRGSEFYNDLRKTINYVKAFDSYELDKADVRRRFRNINSVSVIPEEVWQDNVEEINSYFAILRKTSKEISTKEKMIARTNLAEFMVSIPDYLYKKGESVVREINRYESVIEFKCGYSDEIGIIMYEKQEDLFF
>NZ_CP032669.1|WP_003721307.1|597142_597925_+|type-I-B-CRISPR-associated-protein-Cas5
MLIMKAIRVRLWQDLVNFKKPTSFQLKETYPLPPYSTVIGMVHTLCGFTSYHEMKISIQGKYFSKVNDLATRYEFKNGMTYDASRHQIKVDKYGVSRGVSTVELLVDLELLLHIIPEDPSLVPIIEKAFREPIEFPSLGRREDIATIQKVEVVDVEKRQPKKSTEISDGYNAYVPISLTENNSVHFKSHESSVGRDKLLGTRYLLTEKYERVNHGTEKAPKFFRKWRKKDVIYSSRIFVSKKDVFFFDEDDYLVFIEEEE
>NZ_CP032669.1|WP_003721306.1|596295_597165_+|type-I-B-CRISPR-associated-protein-Cas7/Cst2/DevR
MKNKGLAMTIIFQAESANYGESLGNISSLKKISRNNGDQYTYISRQAIRYNLMDQIGEKEAPVKAEGGGDKKVIQFLSEATITDFPELDFFGYLKTEKGSGGQKRSAKVRLSNAISLETFKGDLDFLTNKGQADKLNENMNIAQAEIHKSYYRYTITIDLDQIGIDGEIALDNKEKARRVKKLMDTVAFLYRDIRGRREDLKPLFVIGGVYDVKNPVFQNIVDVADNNIVIKNIKDLLTYEDIKENTRVGIIDGQFANSDEVKVELKAESVPAFFNDIKGKIDAYYESN
>NZ_CP032669.1|WP_046335429.1|594617_596306_+|type-I-B-CRISPR-associated-protein-Cas8b1/Cst1
MQTEIEVRADDWLINTGLTGFLNIVGKENVRIDGQSIYFTADLLEDFETKYFNFFIQEYKETLSWYKIVSYKETMEQFRIDEFASFDEVALGNLNKYMKDVVKFYLKKANYIKVFPLIDPSANVTKWLEKLNTINLTKKQKWDEVKADIIEEVKQTYTQLDLIIDFCASEKGLQYLGAKNLIYSVINKGWSGVSFLFKQTKFIDPYLDYKTTFVDPVLEYLDTDLSKAKYNCFNCNQPIKNLKLDLSFMNDVGFDTARKTAHVWDFNNDVATCPICRLIYSCVPAGFTYVYGEGMFVNDSYGVEELHRVNERMRNSILRFNKDGINSTNTYRALVESITIEHENNRRYELADIQLVRYENEHYRFNLLSKKMLHIVNDSKGILKSLIRCGYKEGNLNINLYKEVIQHLMNNENLFSLIHKLIYYKQTSVNGLYYNMGNVSGILDINTKFLKEIEVMKNVTQSELWLAKSCGTKFKEGYVKKKSENKISGITYKLLNSLKINDKDGFMDTLLNSYSYLAMPIPDVFIKMFSNNEAFKSVGYAFMLGVGGEKTKKEDGGNTDEK
>NZ_CP032669.1|WP_046335430.1|593879_594602_+|CRISPR-associated-endoribonuclease-Cas6
MRLKINCDFDSKIIPKDFQSKVVSLFKAGIMKSSPERYENLFGGNKHKQYTFSVYLPKPQNKVAEIQLNEANCIINFSTGDAETGIIFYNALMCLRGSKVLFGAGNHITVKNIQIVPEKKIIGKRTILRTLSPVVSRDHNRETFKNWFYSFEDEEFEPTLKRNMLPYLMDAFGEQARYDLEKLKITPISMKKVVVYCHEIHIESSVGIFELEAEAYLQKYLVENGIGTMTGSGFGMIEQF
>NZ_CP032669.1|WP_003721303.1|592711_593527_-|histidine-phosphatase-family-protein
MKKNIFKLLMALCAVLLIAGCGNSTSADKKETKETKEDGTVTFYVVRHGKTMLNTTDRVQGWSDAVLTPAGEEVVKSAGKGLKDVDFSAAYSSDSGRAIQTANLILKESDKSADKEVQTDPRFREFNFGSYEGDLNENMWTDIAKSQGKTLEEWQKAGLSPKDFANSVAALDKTRVKEGENWPAEDYATIQARLKEGLTDVAKKESKNGDSNVLLVSHGLSIGALLDTIEPGYKLPAEGIKNASVTKITYKDGKFTIGDVNDLSYVEKGSK
>NZ_CP032669.1|WP_046335431.1|591160_592591_-|CapA-family-protein
MKKLTYVIITGLVLVFIAGAFWITNSTNQSDQKATQTEPIKKISPANVKTISSEAKKTLNSLASSGADKASTSDLKQLIKELKSYPTEKNDSGVYLQNLTACLEAVKSYTTGKTDEKTLGKVYPAFLASEQKLSAIEKTNQYDWFYAAAATNQQGLKEKGVVTLTMVGDNSFGTYPETPEHLKFDNVFQKNNGNNTYVYKNCLPWFKSDDYTVINAESAFTNATKAENKKWRIKSDPAHVAFLPASGVDAANLANNHTMDYFQVGYDDTLKAFKENNIPVFNTDAPLETTIKGMKTVLLGYDCRMSQQSPAYLERIVKDVKKYKKEDTLVIVNMHWGVEYRETPTDYQTQFGHAILDAGADIIMGSHPHRLESVEKYKDKYIVYSMGDFAFGADPTLLSRMTSMFQLRFKKEDNKIVLKDISIVPTYENSDGSTTENNYQPLPVFGDDAKKIVDELNRISKPIEGGVTEYTYFDPF
>NZ_CP032669.1|WP_014601725.1|605993_606362_-|DUF1304-domain-containing-protein
MAILAFILTFIVMIEHIYIMILEMFFANTKLAAKTFGVEKELLANKKVQTLFANQGLYNGFLAAGLVWGLFFAGAGFAETVQIFFLSCVVVAALFGGATSSKGILVKQGLPAVLALVVVLLV
>NZ_CP032669.1|WP_046335428.1|606508_607924_+|MFS-transporter
MQQEATGGQKIRPIPIIASFLMAGFIGLFSETALNMALSDLIQVFDISSATVQWLTTGYLLTLGILVPISGLLLQWFTTRGLFFTAVSFSIAGTLIAALSPTFAMLMIGRVVQAVGTALLLPLMFNTILLIFPEHKRGSAMGMIGLVIMFAPAVGPTISGLILENLTWNWIFWISLPFLIIALLFGMKFMQNVSVVTKPKIDILSIILSTLGFGGVVFAFSSAGENGWGSATVLVSIIVGGLALGLFVWRQLTMEKPLMDLKVFKYPMFTLGLILVFISFMMILSTMILLPLYLQNSLALAAFSAGLVLLPGGVLNGLMSPFTGRLFDAYGPRALVIPGFIVAVVALFFLTRIEVGTSALTIIVLHSVLMIGISMVMMPAQTNGLNQLPPKLYPDGTAIMNTLQQVSGAIGTAVAITIMSAGQKAYMETAQGMGPEQMVASLTAGIQNAFVFGLIMACIGLLCSLFIRKAK
>NZ_CP032669.1|WP_045131588.1|608055_609060_+|ROK-family-transcriptional-regulator
MAIPRDLKELNKKNIKSILRQQGAMTKAEIAEVTGLSVVTVNKLIRDLVENEEILEQDNSVATGGRRAVSYEINPNFQQVLVISLQEKWKKITYSFSVYNLLGEPEFVEDMSGEDLDITALKRNTKDIICAFPKISCVVIGVPGIEIGGKLRAMDFPLLLNVQLRETLEAEVNLPVLVETDTNAAILGYKNRPVKEENIVGLYYPERFPPGAGLLMNGEILKGQNGLAGEIKHMPLQVDWDNFDFSVDEIKAHIRKMALLTMSFYDPETIVLYTNFYFGQKDFMEELKEELKQVYPYAVLPEIVLSRKFTTDYRIGLLAFGIDYLENNMTDWRI
>NZ_CP032669.1|WP_003721315.1|609091_610408_-|6-phospho-beta-glucosidase
MTKGIKIATIGGGSSYTPELIEGFIKRQDELPVRELWLVDVEAGREKLEIVGNLAKRMVKKAGVNMEIHLTLDREEALKDADFVTTQLRVGLLDARVKDERIPNSYGVVGQETNGPGGMFKGLRTIPVILDICKDMERLCPDAWLINFANPAGMVTEAVLRYSNQKKVVGLCNGPIGIERNIAETLGVDVSEIYVEFVGLNHMVFAKTVYHNGKDVTKDVVFKMTEDEAGSSLKNINATGWDKTFLRTLNMIPIDYLRYYWQTKQQLEDQARAYAEHGTRAEVVKKVEAELFELYKQEELAEKPKQLEQRGGAYYSEAACNLINSIYNDKRDIQIVNTRNNGAILDIDPDSAVETNCVITRQGPIPLASGRLPIAINGIIQEIKTFERLTAEAAVTGDYDKALLAMTINPLTPSESVAREMLDELLEAHKEYLPNFFK
>NZ_CP032669.1|WP_003726690.1|610610_611363_+|MurR/RpiR-family-transcriptional-regulator
MLFLDKNLELNDTELDIYNYIVANLDKVVYMRIRDLATEAHVSTTTILRFCRKFGCNGFSEFRVKLQLYLEEQKLAQIDMADETTYIDFLKRTAQPEFKAQIQNAVEILRDRELVLFAGVGSSGVIAEYGAIYFSSLFTLALHIEDPLNHPFYHLSSKLSDKICMIAISVEGENEDIIRYIHQLKAQNCKVISITNSAKSTIARLSDANIAYYINKEMYQEANITSQLPALYTIENIAREIRTQIDKEKM
>NZ_CP032669.1|WP_014600555.1|611469_611913_+|hypothetical-protein
MYSNMKEKVVFTLIMCSLMILCMSSYNILLENGIGTDSLMIILKAFVPFLFIGFLLDFFVVGKIANRLHALLVSEDASKFKKIIMMQLLMVTFMCVLMSTLSLIVNQGEWSHLGILILRNYFVALFLQIFIVSPFVRLISPRIFALL
>NZ_CP032669.1|WP_031671650.1|611958_613620_-|SulP-family-inorganic-anion-transporter
MFKHILLSLNGYKISYLRNDVISGVGVAALTIPVAMGYAQVAGLPPIYGLYASFLPVIAYVIFASSPQLIFGIDATASAITGSIILGTAGLAAGSKEAIALAPILAFFCAIFLVLFSVLKLGRFAKYISAPVLSGFISGLSVSIIMGQIPKIMGLKESGDSFFSSLGIIFGQFFQSNWISFAMGVVTVIIVITCKKVIPKIPMSLVVLVLGTMAAYFFKLDQYNVDIVGKIPVGFPSLALPDFGASSWALAIGGGLVCAIATFAGSLLPSESFAMRNKYTIDDNRELFAYGVSNFVAAFSGCSPASASVSRTAANEQFRGKTQMVSIVAATIIALIVAFLSGLLYYMPQPVLSGIVFAALVGIIDVDVLKGLFKVSRREATVWIVAALGTLLVGVIFGVLLGIFLSFINVVSRSMKTPIAILGVIEGRHGYFDLKRKPEAKPIPNVVIYRYSASLFFGNFNKFADGLKEAVQDDTKLVIFEASAIINIDTTATESMKDLLKWLDDKGIEYYFADLIDHLKTSFRKHDLGYLIDNGYTKKTVEDALDAYYAEHK
>NZ_CP032669.1|WP_003733179.1|613875_615207_+|DUF1254-domain-containing-protein
MATQKNLVDLATKAYIYGFPFIFNTQQIERYVTVGIGGTKQVPFNNFTHASRLAEPSDKFVSVNNDTIYSNAPIDVSAGPVVLSVPDTSGRYYVLQFVDAWSNNFAYVGKRATGTSAGKFLLTPPNWNGDVPADMIEIKFPTNIGIIIGRLACDGEADLPTVRELQEQLKITPLNEGKEVDGFPEYDRSLGKELAFFEQLRVYMAQFPPAERDLVKQESFAPIGLMEKGVSPYSNPSEELKNALIEGAKAGLANIKKATTNFKSENGWGLTQHLFDYNADFFEIGTKKSLDWVIEDREEAYIIRAVSAITALWGNHGYEAVYLMTWTDTDGNALNGKNKYTLELNPIPPVDSFWSITMYDLPEYFLCENPINRYSIGDRTPGIQYNDDGGITIVVSKDEPTDPKERANWLPAPDAEFRPMFRLYNPQQPLVDGSYHFPGFEKK
>NZ_CP032669.1|WP_003721320.1|615252_615993_-|MerR-family-transcriptional-regulator
MQIKELAELTGVSVRTLHHYDKIGLLVPQKDDWNGYRIYSEKDVDKLQQILFFKELDFPLKKIQQILDDPLFDKNVALDMQRHLLIEKKQRIETMLATLDLTIKNEKGEITMTNKEKFTGFDFSSNPYEEEARKLWGDKVVEKANEKVNNMSEKEQLTLKESFDAEFRHLASVRKLTPESEEAQLEIDHFFHYLNDTHGNIYSLEAFASLGEMYVNDERFTKNIDQFGDGLSQFLQEAMTIYAKNK
>NZ_CP032669.1|WP_003721321.1|616222_617698_+|membrane-protein
MIRKVKSISMWLWHHLTPQIFAVICVFIITIIALFMPPYIGMADNGDFFRIFSSNGLFVNNTNYDALQFGHFVKEFGIYQYFNENQVAIYSSQSIFIQMALLLNKLFWSTTVFDVRFLGGLQLALLLPAIYLLVAGLTAKMKGWPGYVVAALTVFIFADTAYTAYFNSFFSEGLILIMMLYISAGFLLLYQHKYNDYAMLGLIFVASLILITAKQQNAPIAVVIAVCGILVFFIRKNRAFRISAAATFLVIFLSGVVMYAFIPGEFVTINQYQTMTRGVLLDSENPEKSLEEMGMNSEFALLKGTNFYQKYKMIDLDSKLMEKEFYPNYNFVTVLSYYLENPKQFGKMLDLSAQNSFSIRPFEMGNFEKATGYKFKEKTHFFSAYSDVKEKFAPAKFTFLILWALVFLICYGVSAFKHFREKNIRGTLLFDLIVLLIGSGFAVILVTIVGDGEADLTKHNFLFNVCFDLTMLIGAASLLEVYLKKRGERNA

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NZ_CP032669_3	3.17\|603256\|38\|NZ_CP032669\|CRISPRCasFinder,CRT,PILER-CR	603256-603293	38	NZ_CP032669.1	2395444-2395481	0	1.0
NZ_CP032669_2	2.5\|585694\|36\|NZ_CP032669\|PILER-CR,CRISPRCasFinder,CRT	585694-585729	36	NZ_CP032669.1	132213-132248	1	0.972

1. spacer 3.17|603256|38|NZ_CP032669|CRISPRCasFinder,CRT,PILER-CR matches to position: 2395444-2395481, mismatch: 0, identity: 1.0

caaagcaagtacagaagcgtattatgctctattagagt	CRISPR spacer
caaagcaagtacagaagcgtattatgctctattagagt	Protospacer
**************************************

2. spacer 2.5|585694|36|NZ_CP032669|PILER-CR,CRISPRCasFinder,CRT matches to position: 132213-132248, mismatch: 1, identity: 0.972

ggcacagtcttcacgatttcggggatggggaaaact	CRISPR spacer
ggcacagtcttcacgatttcagggatggggaaaact	Protospacer
********************.***************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP032669_2	2.3\|585565\|36\|NZ_CP032669\|PILER-CR,CRISPRCasFinder,CRT	585565-585600	36	DQ003642	Listeria phage A006, complete genome	14613-14648	0	1.0
NZ_CP032669_2	2.4\|585630\|35\|NZ_CP032669\|PILER-CR,CRISPRCasFinder,CRT	585630-585664	35	MT500540	Listeria phage LP-HM00113468, complete genome	26209-26243	0	1.0
NZ_CP032669_3	3.1\|602214\|37\|NZ_CP032669\|CRISPRCasFinder,CRT	602214-602250	37	DQ003642	Listeria phage A006, complete genome	15500-15536	0	1.0
NZ_CP032669_3	3.11\|602862\|37\|NZ_CP032669\|CRISPRCasFinder,CRT,PILER-CR	602862-602898	37	NC_009813	Listeria phage B054, complete genome	37396-37432	0	1.0
NZ_CP032669_3	3.25\|603783\|34\|NZ_CP032669\|CRISPRCasFinder,CRT,PILER-CR	603783-603816	34	NC_003216	Listeria phage A118, complete genome	31160-31193	0	1.0
NZ_CP032669_3	3.25\|603783\|34\|NZ_CP032669\|CRISPRCasFinder,CRT,PILER-CR	603783-603816	34	AJ242593	Bacteriophage A118 complete genome	31160-31193	0	1.0
NZ_CP032669_3	3.25\|603783\|34\|NZ_CP032669\|CRISPRCasFinder,CRT,PILER-CR	603783-603816	34	MH341451	Listeria phage PSU-VKH-LP019, complete genome	27908-27941	0	1.0
NZ_CP032669_3	3.26\|603846\|35\|NZ_CP032669\|CRISPRCasFinder,CRT,PILER-CR	603846-603880	35	NZ_CP011399	Listeria monocytogenes strain CFSAN008100 plasmid pCFSAN008100, complete sequence	2235-2269	0	1.0
NZ_CP032669_3	3.26\|603846\|35\|NZ_CP032669\|CRISPRCasFinder,CRT,PILER-CR	603846-603880	35	DQ003642	Listeria phage A006, complete genome	18012-18046	0	1.0
NZ_CP032669_3	3.27\|603910\|37\|NZ_CP032669\|CRISPRCasFinder,CRT,PILER-CR	603910-603946	37	NC_003216	Listeria phage A118, complete genome	38899-38935	0	1.0
NZ_CP032669_3	3.27\|603910\|37\|NZ_CP032669\|CRISPRCasFinder,CRT,PILER-CR	603910-603946	37	AJ242593	Bacteriophage A118 complete genome	38899-38935	0	1.0
NZ_CP032669_3	3.27\|603910\|37\|NZ_CP032669\|CRISPRCasFinder,CRT,PILER-CR	603910-603946	37	DQ003642	Listeria phage A006, complete genome	36194-36230	0	1.0
NZ_CP032669_3	3.42\|604884\|36\|NZ_CP032669\|CRISPRCasFinder,CRT,PILER-CR	604884-604919	36	NC_021539	Listeria phage LP-030-2, complete genome	32865-32900	0	1.0
NZ_CP032669_3	3.42\|604884\|36\|NZ_CP032669\|CRISPRCasFinder,CRT,PILER-CR	604884-604919	36	NC_009812	Listeria phage B025, complete genome	37685-37720	0	1.0
NZ_CP032669_3	3.42\|604884\|36\|NZ_CP032669\|CRISPRCasFinder,CRT,PILER-CR	604884-604919	36	KJ094023	Listeria phage LP-101, complete genome	38525-38560	0	1.0
NZ_CP032669_3	3.43\|604949\|37\|NZ_CP032669\|CRISPRCasFinder,CRT,PILER-CR	604949-604985	37	MH299806	Listeria phage LP-KV022, complete genome	50264-50300	0	1.0
NZ_CP032669_3	3.43\|604949\|37\|NZ_CP032669\|CRISPRCasFinder,CRT,PILER-CR	604949-604985	37	MN114083	Listeria phage LP-013, complete genome	45785-45821	0	1.0
NZ_CP032669_3	3.43\|604949\|37\|NZ_CP032669\|CRISPRCasFinder,CRT,PILER-CR	604949-604985	37	NC_021785	Listeria phage LP-110, complete genome	7982-8018	0	1.0
NZ_CP032669_3	3.43\|604949\|37\|NZ_CP032669\|CRISPRCasFinder,CRT,PILER-CR	604949-604985	37	MN128593	Listeria phage LP-031, complete genome	45080-45116	0	1.0
NZ_CP032669_3	3.43\|604949\|37\|NZ_CP032669\|CRISPRCasFinder,CRT,PILER-CR	604949-604985	37	MN904502	Listeria phage LP-018, complete genome	45239-45275	0	1.0
NZ_CP032669_3	3.43\|604949\|37\|NZ_CP032669\|CRISPRCasFinder,CRT,PILER-CR	604949-604985	37	KJ094021	Listeria phage LP-114, complete genome	35521-35557	0	1.0
NZ_CP032669_3	3.43\|604949\|37\|NZ_CP032669\|CRISPRCasFinder,CRT,PILER-CR	604949-604985	37	MN114082	Listeria phage LP-010, complete genome	45070-45106	0	1.0
NZ_CP032669_3	3.47\|605209\|37\|NZ_CP032669\|CRISPRCasFinder,CRT,PILER-CR	605209-605245	37	NZ_LR134403	Listeria monocytogenes strain NCTC7974 plasmid 6, complete sequence	202696-202732	0	1.0
NZ_CP032669_3	3.47\|605209\|37\|NZ_CP032669\|CRISPRCasFinder,CRT,PILER-CR	605209-605245	37	KJ094023	Listeria phage LP-101, complete genome	36939-36975	0	1.0
NZ_CP032669_2	2.2\|585500\|36\|NZ_CP032669\|PILER-CR,CRISPRCasFinder,CRT	585500-585535	36	NC_003216	Listeria phage A118, complete genome	36176-36211	1	0.972
NZ_CP032669_2	2.2\|585500\|36\|NZ_CP032669\|PILER-CR,CRISPRCasFinder,CRT	585500-585535	36	AJ242593	Bacteriophage A118 complete genome	36176-36211	1	0.972
NZ_CP032669_2	2.2\|585500\|36\|NZ_CP032669\|PILER-CR,CRISPRCasFinder,CRT	585500-585535	36	NC_047872	Listeria phage LMTA-94, complete genome	125918-125953	1	0.972
NZ_CP032669_2	2.2\|585500\|36\|NZ_CP032669\|PILER-CR,CRISPRCasFinder,CRT	585500-585535	36	KJ591605	Listeria phage LMTA-57, complete genome	136009-136044	1	0.972
NZ_CP032669_2	2.2\|585500\|36\|NZ_CP032669\|PILER-CR,CRISPRCasFinder,CRT	585500-585535	36	NC_009812	Listeria phage B025, complete genome	31855-31890	1	0.972
NZ_CP032669_2	2.2\|585500\|36\|NZ_CP032669\|PILER-CR,CRISPRCasFinder,CRT	585500-585535	36	NC_042048	Listeria phage LMTA-34, complete genome	21672-21707	1	0.972
NZ_CP032669_2	2.2\|585500\|36\|NZ_CP032669\|PILER-CR,CRISPRCasFinder,CRT	585500-585535	36	NC_024360	Listeria phage LMSP-25, complete genome	21672-21707	1	0.972
NZ_CP032669_2	2.2\|585500\|36\|NZ_CP032669\|PILER-CR,CRISPRCasFinder,CRT	585500-585535	36	DQ003642	Listeria phage A006, complete genome	33471-33506	1	0.972
NZ_CP032669_2	2.4\|585630\|35\|NZ_CP032669\|PILER-CR,CRISPRCasFinder,CRT	585630-585664	35	NC_003216	Listeria phage A118, complete genome	20259-20293	1	0.971
NZ_CP032669_2	2.4\|585630\|35\|NZ_CP032669\|PILER-CR,CRISPRCasFinder,CRT	585630-585664	35	AJ242593	Bacteriophage A118 complete genome	20259-20293	1	0.971
NZ_CP032669_2	2.4\|585630\|35\|NZ_CP032669\|PILER-CR,CRISPRCasFinder,CRT	585630-585664	35	X85008	Bacteriophage A118 hol118 and ply118 genes	507-541	1	0.971
NZ_CP032669_2	2.5\|585694\|36\|NZ_CP032669\|PILER-CR,CRISPRCasFinder,CRT	585694-585729	36	DQ003642	Listeria phage A006, complete genome	19078-19113	1	0.972
NZ_CP032669_3	3.14\|603058\|37\|NZ_CP032669\|CRISPRCasFinder,CRT,PILER-CR	603058-603094	37	JB137888	Sequence 7 from Patent WO2012159774	44325-44361	1	0.973
NZ_CP032669_3	3.14\|603058\|37\|NZ_CP032669\|CRISPRCasFinder,CRT,PILER-CR	603058-603094	37	KJ094025	Listeria phage LP-032 contig 2, partial genome	33696-33732	1	0.973
NZ_CP032669_3	3.14\|603058\|37\|NZ_CP032669\|CRISPRCasFinder,CRT,PILER-CR	603058-603094	37	NC_021787	Listeria phage LP-037, complete genome	26196-26232	1	0.973
NZ_CP032669_3	3.14\|603058\|37\|NZ_CP032669\|CRISPRCasFinder,CRT,PILER-CR	603058-603094	37	JX442241	Listeria phage P70, complete genome	9319-9355	1	0.973
NZ_CP032669_3	3.14\|603058\|37\|NZ_CP032669\|CRISPRCasFinder,CRT,PILER-CR	603058-603094	37	KJ094020	Listeria phage LP-026, complete genome	53366-53402	1	0.973
NZ_CP032669_3	3.18\|603323\|37\|NZ_CP032669\|CRISPRCasFinder,CRT,PILER-CR	603323-603359	37	NZ_LR134403	Listeria monocytogenes strain NCTC7974 plasmid 6, complete sequence	225937-225973	1	0.973
NZ_CP032669_3	3.18\|603323\|37\|NZ_CP032669\|CRISPRCasFinder,CRT,PILER-CR	603323-603359	37	NZ_CP011399	Listeria monocytogenes strain CFSAN008100 plasmid pCFSAN008100, complete sequence	577-613	1	0.973
NZ_CP032669_3	3.18\|603323\|37\|NZ_CP032669\|CRISPRCasFinder,CRT,PILER-CR	603323-603359	37	KJ094023	Listeria phage LP-101, complete genome	16410-16446	1	0.973
NZ_CP032669_3	3.23\|603655\|35\|NZ_CP032669\|CRISPRCasFinder,CRT,PILER-CR	603655-603689	35	MN904502	Listeria phage LP-018, complete genome	46274-46308	1	0.971
NZ_CP032669_3	3.23\|603655\|35\|NZ_CP032669\|CRISPRCasFinder,CRT,PILER-CR	603655-603689	35	JX442241	Listeria phage P70, complete genome	52734-52768	1	0.971
NZ_CP032669_3	3.27\|603910\|37\|NZ_CP032669\|CRISPRCasFinder,CRT,PILER-CR	603910-603946	37	MH341451	Listeria phage PSU-VKH-LP019, complete genome	37088-37124	1	0.973
NZ_CP032669_3	3.28\|603976\|35\|NZ_CP032669\|CRISPRCasFinder,CRT,PILER-CR	603976-604010	35	JX442241	Listeria phage P70, complete genome	52280-52314	1	0.971
NZ_CP032669_3	3.37\|604558\|36\|NZ_CP032669\|CRISPRCasFinder,CRT,PILER-CR	604558-604593	36	KJ094023	Listeria phage LP-101, complete genome	29149-29184	1	0.972
NZ_CP032669_3	3.39\|604689\|35\|NZ_CP032669\|CRISPRCasFinder,CRT,PILER-CR	604689-604723	35	MH299806	Listeria phage LP-KV022, complete genome	51799-51833	1	0.971
NZ_CP032669_3	3.39\|604689\|35\|NZ_CP032669\|CRISPRCasFinder,CRT,PILER-CR	604689-604723	35	NC_021785	Listeria phage LP-110, complete genome	9517-9551	1	0.971
NZ_CP032669_3	3.39\|604689\|35\|NZ_CP032669\|CRISPRCasFinder,CRT,PILER-CR	604689-604723	35	MN128593	Listeria phage LP-031, complete genome	46615-46649	1	0.971
NZ_CP032669_3	3.39\|604689\|35\|NZ_CP032669\|CRISPRCasFinder,CRT,PILER-CR	604689-604723	35	MN904502	Listeria phage LP-018, complete genome	46772-46806	1	0.971
NZ_CP032669_3	3.41\|604818\|37\|NZ_CP032669\|CRISPRCasFinder,CRT,PILER-CR	604818-604854	37	KJ094023	Listeria phage LP-101, complete genome	18674-18710	1	0.973
NZ_CP032669_3	3.42\|604884\|36\|NZ_CP032669\|CRISPRCasFinder,CRT,PILER-CR	604884-604919	36	MT500540	Listeria phage LP-HM00113468, complete genome	10614-10649	1	0.972
NZ_CP032669_3	3.42\|604884\|36\|NZ_CP032669\|CRISPRCasFinder,CRT,PILER-CR	604884-604919	36	NZ_LR134403	Listeria monocytogenes strain NCTC7974 plasmid 6, complete sequence	204282-204317	1	0.972
NZ_CP032669_3	3.42\|604884\|36\|NZ_CP032669\|CRISPRCasFinder,CRT,PILER-CR	604884-604919	36	AJ312240	Bacteriophage PSA complete genome	32207-32242	1	0.972
NZ_CP032669_3	3.46\|605144\|36\|NZ_CP032669\|CRISPRCasFinder,CRT,PILER-CR	605144-605179	36	JB137888	Sequence 7 from Patent WO2012159774	48996-49031	1	0.972
NZ_CP032669_3	3.46\|605144\|36\|NZ_CP032669\|CRISPRCasFinder,CRT,PILER-CR	605144-605179	36	KJ094025	Listeria phage LP-032 contig 2, partial genome	38367-38402	1	0.972
NZ_CP032669_3	3.46\|605144\|36\|NZ_CP032669\|CRISPRCasFinder,CRT,PILER-CR	605144-605179	36	MH299806	Listeria phage LP-KV022, complete genome	4649-4684	1	0.972
NZ_CP032669_3	3.46\|605144\|36\|NZ_CP032669\|CRISPRCasFinder,CRT,PILER-CR	605144-605179	36	MN114083	Listeria phage LP-013, complete genome	64794-64829	1	0.972
NZ_CP032669_3	3.46\|605144\|36\|NZ_CP032669\|CRISPRCasFinder,CRT,PILER-CR	605144-605179	36	NC_021785	Listeria phage LP-110, complete genome	27495-27530	1	0.972
NZ_CP032669_3	3.46\|605144\|36\|NZ_CP032669\|CRISPRCasFinder,CRT,PILER-CR	605144-605179	36	MN128593	Listeria phage LP-031, complete genome	64602-64637	1	0.972
NZ_CP032669_3	3.46\|605144\|36\|NZ_CP032669\|CRISPRCasFinder,CRT,PILER-CR	605144-605179	36	NC_021787	Listeria phage LP-037, complete genome	21526-21561	1	0.972
NZ_CP032669_3	3.46\|605144\|36\|NZ_CP032669\|CRISPRCasFinder,CRT,PILER-CR	605144-605179	36	MN904502	Listeria phage LP-018, complete genome	64418-64453	1	0.972
NZ_CP032669_3	3.46\|605144\|36\|NZ_CP032669\|CRISPRCasFinder,CRT,PILER-CR	605144-605179	36	JX442241	Listeria phage P70, complete genome	4649-4684	1	0.972
NZ_CP032669_3	3.46\|605144\|36\|NZ_CP032669\|CRISPRCasFinder,CRT,PILER-CR	605144-605179	36	KJ094020	Listeria phage LP-026, complete genome	48696-48731	1	0.972
NZ_CP032669_3	3.46\|605144\|36\|NZ_CP032669\|CRISPRCasFinder,CRT,PILER-CR	605144-605179	36	KJ094021	Listeria phage LP-114, complete genome	54645-54680	1	0.972
NZ_CP032669_3	3.46\|605144\|36\|NZ_CP032669\|CRISPRCasFinder,CRT,PILER-CR	605144-605179	36	MN114082	Listeria phage LP-010, complete genome	63763-63798	1	0.972
NZ_CP032669_3	3.47\|605209\|37\|NZ_CP032669\|CRISPRCasFinder,CRT,PILER-CR	605209-605245	37	AJ312240	Bacteriophage PSA complete genome	30621-30657	1	0.973
NZ_CP032669_3	3.55\|605726\|37\|NZ_CP032669\|CRISPRCasFinder,CRT,PILER-CR	605726-605762	37	KY705255	Streptococcus phage P0095, complete genome	33666-33702	1	0.973
NZ_CP032669_3	3.55\|605726\|37\|NZ_CP032669\|CRISPRCasFinder,CRT,PILER-CR	605726-605762	37	KY705251	Streptococcus phage P0091, complete genome	32778-32814	1	0.973
NZ_CP032669_3	3.55\|605726\|37\|NZ_CP032669\|CRISPRCasFinder,CRT,PILER-CR	605726-605762	37	KX879643	Streptococcus phage CHPC1151, complete genome	31697-31733	1	0.973
NZ_CP032669_3	3.55\|605726\|37\|NZ_CP032669\|CRISPRCasFinder,CRT,PILER-CR	605726-605762	37	MK202161	Streptococcus phage CHPC1282, complete genome	32484-32520	1	0.973
NZ_CP032669_3	3.55\|605726\|37\|NZ_CP032669\|CRISPRCasFinder,CRT,PILER-CR	605726-605762	37	KY705252	Streptococcus phage P0092, complete genome	31845-31881	1	0.973
NZ_CP032669_3	3.55\|605726\|37\|NZ_CP032669\|CRISPRCasFinder,CRT,PILER-CR	605726-605762	37	MH937506	Streptococcus phage CHPC1148, complete genome	35552-35588	1	0.973
NZ_CP032669_3	3.55\|605726\|37\|NZ_CP032669\|CRISPRCasFinder,CRT,PILER-CR	605726-605762	37	KY705253	Streptococcus phage P0093, complete genome	32631-32667	1	0.973
NZ_CP032669_3	3.55\|605726\|37\|NZ_CP032669\|CRISPRCasFinder,CRT,PILER-CR	605726-605762	37	KY705254	Streptococcus phage P0094, complete genome	31034-31070	1	0.973
NZ_CP032669_2	2.5\|585694\|36\|NZ_CP032669\|PILER-CR,CRISPRCasFinder,CRT	585694-585729	36	NC_003216	Listeria phage A118, complete genome	20793-20828	2	0.944
NZ_CP032669_2	2.5\|585694\|36\|NZ_CP032669\|PILER-CR,CRISPRCasFinder,CRT	585694-585729	36	AJ242593	Bacteriophage A118 complete genome	20793-20828	2	0.944
NZ_CP032669_2	2.5\|585694\|36\|NZ_CP032669\|PILER-CR,CRISPRCasFinder,CRT	585694-585729	36	X85008	Bacteriophage A118 hol118 and ply118 genes	1041-1076	2	0.944
NZ_CP032669_2	2.5\|585694\|36\|NZ_CP032669\|PILER-CR,CRISPRCasFinder,CRT	585694-585729	36	KJ094023	Listeria phage LP-101, complete genome	19817-19852	2	0.944
NZ_CP032669_3	3.11\|602862\|37\|NZ_CP032669\|CRISPRCasFinder,CRT,PILER-CR	602862-602898	37	MH341453	Listeria phage PSU-VKH-LP041, complete genome	37986-38022	2	0.946
NZ_CP032669_3	3.28\|603976\|35\|NZ_CP032669\|CRISPRCasFinder,CRT,PILER-CR	603976-604010	35	NC_021787	Listeria phage LP-037, complete genome	3029-3063	2	0.943
NZ_CP032669_3	3.31\|604167\|35\|NZ_CP032669\|CRISPRCasFinder,CRT,PILER-CR	604167-604201	35	MH341453	Listeria phage PSU-VKH-LP041, complete genome	39753-39787	2	0.943
NZ_CP032669_3	3.31\|604167\|35\|NZ_CP032669\|CRISPRCasFinder,CRT,PILER-CR	604167-604201	35	NC_009813	Listeria phage B054, complete genome	39161-39195	2	0.943
NZ_CP032669_3	3.38\|604623\|37\|NZ_CP032669\|CRISPRCasFinder,CRT,PILER-CR	604623-604659	37	JQ797329	Listeria phage vB_LmoM_AG20, complete genome	7374-7410	2	0.946
NZ_CP032669_3	3.38\|604623\|37\|NZ_CP032669\|CRISPRCasFinder,CRT,PILER-CR	604623-604659	37	KJ535721	Listeria phage List-36, complete genome	122410-122446	2	0.946
NZ_CP032669_3	3.39\|604689\|35\|NZ_CP032669\|CRISPRCasFinder,CRT,PILER-CR	604689-604723	35	JB137888	Sequence 7 from Patent WO2012159774	1514-1548	2	0.943
NZ_CP032669_3	3.41\|604818\|37\|NZ_CP032669\|CRISPRCasFinder,CRT,PILER-CR	604818-604854	37	NZ_LR134403	Listeria monocytogenes strain NCTC7974 plasmid 6, complete sequence	228202-228238	2	0.946
NZ_CP032669_3	3.43\|604949\|37\|NZ_CP032669\|CRISPRCasFinder,CRT,PILER-CR	604949-604985	37	JB137888	Sequence 7 from Patent WO2012159774	3047-3083	2	0.946
NZ_CP032669_3	3.55\|605726\|37\|NZ_CP032669\|CRISPRCasFinder,CRT,PILER-CR	605726-605762	37	MN689509	Lactococcus phage CHPC1175, complete genome	29544-29580	2	0.946
NZ_CP032669_3	3.55\|605726\|37\|NZ_CP032669\|CRISPRCasFinder,CRT,PILER-CR	605726-605762	37	MK448735	Streptococcus phage Javan349, complete genome	11483-11519	2	0.946
NZ_CP032669_3	3.14\|603058\|37\|NZ_CP032669\|CRISPRCasFinder,CRT,PILER-CR	603058-603094	37	MH299806	Listeria phage LP-KV022, complete genome	9319-9355	3	0.919
NZ_CP032669_3	3.14\|603058\|37\|NZ_CP032669\|CRISPRCasFinder,CRT,PILER-CR	603058-603094	37	MN114083	Listeria phage LP-013, complete genome	3804-3840	3	0.919
NZ_CP032669_3	3.14\|603058\|37\|NZ_CP032669\|CRISPRCasFinder,CRT,PILER-CR	603058-603094	37	NC_021785	Listeria phage LP-110, complete genome	32165-32201	3	0.919
NZ_CP032669_3	3.14\|603058\|37\|NZ_CP032669\|CRISPRCasFinder,CRT,PILER-CR	603058-603094	37	MN128593	Listeria phage LP-031, complete genome	3804-3840	3	0.919
NZ_CP032669_3	3.14\|603058\|37\|NZ_CP032669\|CRISPRCasFinder,CRT,PILER-CR	603058-603094	37	MN904502	Listeria phage LP-018, complete genome	3804-3840	3	0.919
NZ_CP032669_3	3.14\|603058\|37\|NZ_CP032669\|CRISPRCasFinder,CRT,PILER-CR	603058-603094	37	KJ094021	Listeria phage LP-114, complete genome	59315-59351	3	0.919
NZ_CP032669_3	3.14\|603058\|37\|NZ_CP032669\|CRISPRCasFinder,CRT,PILER-CR	603058-603094	37	MN114082	Listeria phage LP-010, complete genome	3804-3840	3	0.919
NZ_CP032669_3	3.37\|604558\|36\|NZ_CP032669\|CRISPRCasFinder,CRT,PILER-CR	604558-604593	36	MH341451	Listeria phage PSU-VKH-LP019, complete genome	32668-32703	3	0.917
NZ_CP032669_3	3.37\|604558\|36\|NZ_CP032669\|CRISPRCasFinder,CRT,PILER-CR	604558-604593	36	KP399677	Listeria phage vB_LmoS_188, complete genome	32868-32903	3	0.917
NZ_CP032669_3	3.37\|604558\|36\|NZ_CP032669\|CRISPRCasFinder,CRT,PILER-CR	604558-604593	36	KP399678	Listeria phage vB_LmoS_293, complete genome	34105-34140	3	0.917
NZ_CP032669_3	3.37\|604558\|36\|NZ_CP032669\|CRISPRCasFinder,CRT,PILER-CR	604558-604593	36	KP399678	Listeria phage vB_LmoS_293, complete genome	35152-35187	3	0.917
NZ_CP032669_3	3.43\|604949\|37\|NZ_CP032669\|CRISPRCasFinder,CRT,PILER-CR	604949-604985	37	KJ094026	Listeria phage LP-032 contig 3, partial genome	12567-12603	3	0.919
NZ_CP032669_3	3.43\|604949\|37\|NZ_CP032669\|CRISPRCasFinder,CRT,PILER-CR	604949-604985	37	NC_021787	Listeria phage LP-037, complete genome	2448-2484	3	0.919
NZ_CP032669_3	3.43\|604949\|37\|NZ_CP032669\|CRISPRCasFinder,CRT,PILER-CR	604949-604985	37	JX442241	Listeria phage P70, complete genome	51699-51735	3	0.919
NZ_CP032669_3	3.43\|604949\|37\|NZ_CP032669\|CRISPRCasFinder,CRT,PILER-CR	604949-604985	37	KJ094020	Listeria phage LP-026, complete genome	28599-28635	3	0.919
NZ_CP032669_3	3.45\|605079\|36\|NZ_CP032669\|CRISPRCasFinder,CRT,PILER-CR	605079-605114	36	KJ094020	Listeria phage LP-026, complete genome	27349-27384	3	0.917
NZ_CP032669_3	3.45\|605079\|36\|NZ_CP032669\|CRISPRCasFinder,CRT,PILER-CR	605079-605114	36	JB137888	Sequence 7 from Patent WO2012159774	4301-4336	3	0.917
NZ_CP032669_3	3.45\|605079\|36\|NZ_CP032669\|CRISPRCasFinder,CRT,PILER-CR	605079-605114	36	KJ094026	Listeria phage LP-032 contig 3, partial genome	13818-13853	3	0.917
NZ_CP032669_3	3.15\|603124\|35\|NZ_CP032669\|CRISPRCasFinder,CRT,PILER-CR	603124-603158	35	MH299806	Listeria phage LP-KV022, complete genome	51195-51229	4	0.886
NZ_CP032669_3	3.15\|603124\|35\|NZ_CP032669\|CRISPRCasFinder,CRT,PILER-CR	603124-603158	35	JB137888	Sequence 7 from Patent WO2012159774	2118-2152	4	0.886
NZ_CP032669_3	3.15\|603124\|35\|NZ_CP032669\|CRISPRCasFinder,CRT,PILER-CR	603124-603158	35	MN114083	Listeria phage LP-013, complete genome	46716-46750	4	0.886
NZ_CP032669_3	3.15\|603124\|35\|NZ_CP032669\|CRISPRCasFinder,CRT,PILER-CR	603124-603158	35	NC_021785	Listeria phage LP-110, complete genome	8913-8947	4	0.886
NZ_CP032669_3	3.15\|603124\|35\|NZ_CP032669\|CRISPRCasFinder,CRT,PILER-CR	603124-603158	35	KJ094021	Listeria phage LP-114, complete genome	36721-36755	4	0.886
NZ_CP032669_3	3.15\|603124\|35\|NZ_CP032669\|CRISPRCasFinder,CRT,PILER-CR	603124-603158	35	MN114082	Listeria phage LP-010, complete genome	46001-46035	4	0.886
NZ_CP032669_3	3.26\|603846\|35\|NZ_CP032669\|CRISPRCasFinder,CRT,PILER-CR	603846-603880	35	KJ094022	Listeria phage LP-030-3, complete genome	27891-27925	4	0.886
NZ_CP032669_3	3.39\|604689\|35\|NZ_CP032669\|CRISPRCasFinder,CRT,PILER-CR	604689-604723	35	KJ094020	Listeria phage LP-026, complete genome	30134-30168	4	0.886
NZ_CP032669_3	3.39\|604689\|35\|NZ_CP032669\|CRISPRCasFinder,CRT,PILER-CR	604689-604723	35	KJ094026	Listeria phage LP-032 contig 3, partial genome	11034-11068	4	0.886
NZ_CP032669_3	3.47\|605209\|37\|NZ_CP032669\|CRISPRCasFinder,CRT,PILER-CR	605209-605245	37	NC_021539	Listeria phage LP-030-2, complete genome	31281-31317	4	0.892
NZ_CP032669_3	3.15\|603124\|35\|NZ_CP032669\|CRISPRCasFinder,CRT,PILER-CR	603124-603158	35	NC_021787	Listeria phage LP-037, complete genome	3379-3413	5	0.857
NZ_CP032669_3	3.56\|605792\|35\|NZ_CP032669\|CRISPRCasFinder,CRT,PILER-CR	605792-605826	35	MN694189	Marine virus AFVG_250M578, complete genome	47879-47913	6	0.829
NZ_CP032669_3	3.5\|602473\|36\|NZ_CP032669\|CRISPRCasFinder,CRT,PILER-CR	602473-602508	36	NZ_CP042875	Bacillus cereus strain 09 plasmid unnamed1, complete sequence	84898-84933	7	0.806
NZ_CP032669_3	3.10\|602797\|36\|NZ_CP032669\|CRISPRCasFinder,CRT,PILER-CR	602797-602832	36	MN114083	Listeria phage LP-013, complete genome	48000-48035	7	0.806
NZ_CP032669_3	3.10\|602797\|36\|NZ_CP032669\|CRISPRCasFinder,CRT,PILER-CR	602797-602832	36	MN114082	Listeria phage LP-010, complete genome	47285-47320	7	0.806
NZ_CP032669_3	3.3\|602346\|34\|NZ_CP032669\|CRISPRCasFinder,CRT	602346-602379	34	AX059140	Sequence 1 from Patent WO0075335	31602-31635	8	0.765
NZ_CP032669_3	3.3\|602346\|34\|NZ_CP032669\|CRISPRCasFinder,CRT	602346-602379	34	NC_004735	Rhodothermus phage RM378, complete genome	31602-31635	8	0.765
NZ_CP032669_3	3.7\|602602\|35\|NZ_CP032669\|CRISPRCasFinder,CRT,PILER-CR	602602-602636	35	MN850566	Escherichia phage garuso, complete genome	77380-77414	8	0.771
NZ_CP032669_3	3.23\|603655\|35\|NZ_CP032669\|CRISPRCasFinder,CRT,PILER-CR	603655-603689	35	MN693074	Marine virus AFVG_25M380, complete genome	29085-29119	8	0.771
NZ_CP032669_3	3.29\|604040\|35\|NZ_CP032669\|CRISPRCasFinder,CRT,PILER-CR	604040-604074	35	NZ_MF547664	Clostridioides difficile strain LIBA-6289 plasmid LIBA6289, complete sequence	23518-23552	8	0.771
NZ_CP032669_3	3.5\|602473\|36\|NZ_CP032669\|CRISPRCasFinder,CRT,PILER-CR	602473-602508	36	NZ_CP014283	Bacillus thuringiensis strain Bt185 plasmid pBT1850636, complete sequence	517182-517217	9	0.75
NZ_CP032669_3	3.5\|602473\|36\|NZ_CP032669\|CRISPRCasFinder,CRT,PILER-CR	602473-602508	36	NZ_CP022446	Bacillus cereus C1L plasmid pC1L1, complete sequence	21015-21050	9	0.75
NZ_CP032669_3	3.5\|602473\|36\|NZ_CP032669\|CRISPRCasFinder,CRT,PILER-CR	602473-602508	36	NZ_CP032614	Bacillus thuringiensis strain QZL38 plasmid p.1, complete sequence	206366-206401	9	0.75
NZ_CP032669_3	3.5\|602473\|36\|NZ_CP032669\|CRISPRCasFinder,CRT,PILER-CR	602473-602508	36	NZ_AP014865	Bacillus thuringiensis serovar tolworthi strain Pasteur Institute Standard strain plasmid pKK1, complete sequence	34447-34482	9	0.75
NZ_CP032669_3	3.5\|602473\|36\|NZ_CP032669\|CRISPRCasFinder,CRT,PILER-CR	602473-602508	36	NZ_CP023246	Bacillus cereus strain HBL-AI plasmid unnamed1, complete sequence	138515-138550	9	0.75
NZ_CP032669_3	3.39\|604689\|35\|NZ_CP032669\|CRISPRCasFinder,CRT,PILER-CR	604689-604723	35	AP014248	Uncultured Mediterranean phage uvMED isolate uvMED-GF-U-MedDCM-OCT-S34-C282, * SEQUENCING IN PROGRESS *	2516-2550	9	0.743
NZ_CP032669_3	3.49\|605340\|35\|NZ_CP032669\|CRISPRCasFinder,CRT,PILER-CR	605340-605374	35	NZ_CP043831	Bacillus sp. BS98 plasmid unnamed1	257925-257959	9	0.743
NZ_CP032669_3	3.50\|605404\|35\|NZ_CP032669\|CRISPRCasFinder,CRT,PILER-CR	605404-605438	35	NC_014533	Gloeothece verrucosa PCC 7822 plasmid Cy782201, complete sequence	491525-491559	9	0.743
NZ_CP032669_3	3.56\|605792\|35\|NZ_CP032669\|CRISPRCasFinder,CRT,PILER-CR	605792-605826	35	MK448625	Streptococcus satellite phage Javan738, complete genome	5960-5994	9	0.743
NZ_CP032669_3	3.56\|605792\|35\|NZ_CP032669\|CRISPRCasFinder,CRT,PILER-CR	605792-605826	35	MK448449	Streptococcus satellite phage Javan356, complete genome	4490-4524	9	0.743
NZ_CP032669_3	3.56\|605792\|35\|NZ_CP032669\|CRISPRCasFinder,CRT,PILER-CR	605792-605826	35	MK448636	Streptococcus satellite phage Javan749, complete genome	6112-6146	9	0.743
NZ_CP032669_3	3.56\|605792\|35\|NZ_CP032669\|CRISPRCasFinder,CRT,PILER-CR	605792-605826	35	NZ_CP045037	Lactobacillus mali strain LM596 plasmid unnamed2, complete sequence	34734-34768	9	0.743
NZ_CP032669_3	3.56\|605792\|35\|NZ_CP032669\|CRISPRCasFinder,CRT,PILER-CR	605792-605826	35	NZ_CP018177	Lactobacillus hordei strain TMW 1.1822 plasmid pL11822-1, complete sequence	11325-11359	9	0.743
NZ_CP032669_3	3.56\|605792\|35\|NZ_CP032669\|CRISPRCasFinder,CRT,PILER-CR	605792-605826	35	NZ_CP018181	Lactobacillus nagelii strain TMW 1.1827 plasmid pL11827-1, complete sequence	63608-63642	9	0.743
NZ_CP032669_3	3.5\|602473\|36\|NZ_CP032669\|CRISPRCasFinder,CRT,PILER-CR	602473-602508	36	NZ_CP012100	Bacillus thuringiensis strain HS18-1 plasmid pHS18-1, complete sequence	195973-196008	10	0.722
NZ_CP032669_3	3.5\|602473\|36\|NZ_CP032669\|CRISPRCasFinder,CRT,PILER-CR	602473-602508	36	NZ_CP007513	Bacillus bombysepticus plasmid pBb, complete genome	337602-337637	10	0.722
NZ_CP032669_3	3.5\|602473\|36\|NZ_CP032669\|CRISPRCasFinder,CRT,PILER-CR	602473-602508	36	NZ_CP053952	Bacillus cereus strain FDAARGOS_798 plasmid unnamed1, complete sequence	356867-356902	10	0.722
NZ_CP032669_3	3.5\|602473\|36\|NZ_CP032669\|CRISPRCasFinder,CRT,PILER-CR	602473-602508	36	NZ_CP045607	Bacillus cereus strain SB1 plasmid p1, complete sequence	353011-353046	10	0.722
NZ_CP032669_3	3.5\|602473\|36\|NZ_CP032669\|CRISPRCasFinder,CRT,PILER-CR	602473-602508	36	NZ_CP011156	Bacillus cereus strain HN001 plasmid pRML01, complete sequence	196703-196738	10	0.722
NZ_CP032669_3	3.5\|602473\|36\|NZ_CP032669\|CRISPRCasFinder,CRT,PILER-CR	602473-602508	36	NZ_CP053949	Bacillus cereus strain FDAARGOS_799 plasmid unnamed1, complete sequence	6925-6960	10	0.722
NZ_CP032669_3	3.14\|603058\|37\|NZ_CP032669\|CRISPRCasFinder,CRT,PILER-CR	603058-603094	37	MK368614	Vibrio phage 2 TSL-2019, complete genome	30775-30811	10	0.73
NZ_CP032669_3	3.39\|604689\|35\|NZ_CP032669\|CRISPRCasFinder,CRT,PILER-CR	604689-604723	35	NZ_CP046510	Erwinia sp. J780 plasmid pla1, complete sequence	17274-17308	10	0.714
NZ_CP032669_3	3.39\|604689\|35\|NZ_CP032669\|CRISPRCasFinder,CRT,PILER-CR	604689-604723	35	NZ_CP045356	Vibrio sp. THAF64 plasmid pTHAF64_a, complete sequence	79653-79687	10	0.714
NZ_CP032669_3	3.39\|604689\|35\|NZ_CP032669\|CRISPRCasFinder,CRT,PILER-CR	604689-604723	35	NZ_CP046163	Vibrio sp. THAF191c plasmid pTHAF191c_b, complete sequence	1496861-1496895	10	0.714
NZ_CP032669_3	3.39\|604689\|35\|NZ_CP032669\|CRISPRCasFinder,CRT,PILER-CR	604689-604723	35	NZ_CP046066	Vibrio sp. THAF191d plasmid pTHAF191d_b, complete sequence	1680253-1680287	10	0.714
NZ_CP032669_3	3.5\|602473\|36\|NZ_CP032669\|CRISPRCasFinder,CRT,PILER-CR	602473-602508	36	NZ_CP050184	Bacillus thuringiensis strain HER1410 plasmid pLUSID1, complete sequence	221841-221876	11	0.694
NZ_CP032669_3	3.29\|604040\|35\|NZ_CP032669\|CRISPRCasFinder,CRT,PILER-CR	604040-604074	35	NZ_CP012103	Bacillus thuringiensis strain HS18-1 plasmid pHS18-4, complete sequence	37712-37746	11	0.686
NZ_CP032669_3	3.29\|604040\|35\|NZ_CP032669\|CRISPRCasFinder,CRT,PILER-CR	604040-604074	35	AP022644	Bacillus wiedmannii PL1 plasmid pBwiPL1-1 DNA, complete sequence	47741-47775	11	0.686
NZ_CP032669_3	3.29\|604040\|35\|NZ_CP032669\|CRISPRCasFinder,CRT,PILER-CR	604040-604074	35	NZ_CP012101	Bacillus thuringiensis strain HS18-1 plasmid pHS18-2, complete sequence	203066-203100	11	0.686
NZ_CP032669_3	3.29\|604040\|35\|NZ_CP032669\|CRISPRCasFinder,CRT,PILER-CR	604040-604074	35	NZ_CP031072	Bacillus mycoides strain BPN401 plasmid pl395, complete sequence	369457-369491	11	0.686
NZ_CP032669_3	3.29\|604040\|35\|NZ_CP032669\|CRISPRCasFinder,CRT,PILER-CR	604040-604074	35	NZ_CP013276	Bacillus thuringiensis serovar israelensis strain AM65-52 plasmid pAM65-52-1-360K, complete sequence	346229-346263	11	0.686
NZ_CP032669_3	3.29\|604040\|35\|NZ_CP032669\|CRISPRCasFinder,CRT,PILER-CR	604040-604074	35	NZ_CP039722	Bacillus thuringiensis strain BT-59 plasmid p1, complete sequence	124018-124052	11	0.686
NZ_CP032669_3	3.29\|604040\|35\|NZ_CP032669\|CRISPRCasFinder,CRT,PILER-CR	604040-604074	35	CP024686	Bacillus wiedmannii bv. thuringiensis strain FCC41 plasmid pFCC41-2-313K, complete sequence	308509-308543	11	0.686
NZ_CP032669_3	3.29\|604040\|35\|NZ_CP032669\|CRISPRCasFinder,CRT,PILER-CR	604040-604074	35	NC_018687	Bacillus thuringiensis MC28 plasmid pMC189, complete sequence	2072-2106	11	0.686
NZ_CP032669_3	3.29\|604040\|35\|NZ_CP032669\|CRISPRCasFinder,CRT,PILER-CR	604040-604074	35	NZ_CP009349	Bacillus thuringiensis HD1002 plasmid 1, complete sequence	62669-62703	11	0.686
NZ_CP032669_3	3.29\|604040\|35\|NZ_CP032669\|CRISPRCasFinder,CRT,PILER-CR	604040-604074	35	NZ_CP045023	Bacillus thuringiensis strain JW-1 plasmid p1, complete sequence	346275-346309	11	0.686
NZ_CP032669_3	3.39\|604689\|35\|NZ_CP032669\|CRISPRCasFinder,CRT,PILER-CR	604689-604723	35	NC_048106	Synechococcus phage S-CBWM1, complete genome	44408-44442	11	0.686

1. spacer 2.3|585565|36|NZ_CP032669|PILER-CR,CRISPRCasFinder,CRT matches to DQ003642 (Listeria phage A006, complete genome) position: , mismatch: 0, identity: 1.0

tcgccaatgtataagtaatcctctttattcgataca	CRISPR spacer
tcgccaatgtataagtaatcctctttattcgataca	Protospacer
************************************

2. spacer 2.4|585630|35|NZ_CP032669|PILER-CR,CRISPRCasFinder,CRT matches to MT500540 (Listeria phage LP-HM00113468, complete genome) position: , mismatch: 0, identity: 1.0

ttcgccatgacgaaatctagcgcttgtcctactaa	CRISPR spacer
ttcgccatgacgaaatctagcgcttgtcctactaa	Protospacer
***********************************

3. spacer 3.1|602214|37|NZ_CP032669|CRISPRCasFinder,CRT matches to DQ003642 (Listeria phage A006, complete genome) position: , mismatch: 0, identity: 1.0

tttttataaattgtttctgtttcaaaatcaaacatta	CRISPR spacer
tttttataaattgtttctgtttcaaaatcaaacatta	Protospacer
*************************************

4. spacer 3.11|602862|37|NZ_CP032669|CRISPRCasFinder,CRT,PILER-CR matches to NC_009813 (Listeria phage B054, complete genome) position: , mismatch: 0, identity: 1.0

agagtttccagctgtaaggccagatattgataatttc	CRISPR spacer
agagtttccagctgtaaggccagatattgataatttc	Protospacer
*************************************

5. spacer 3.25|603783|34|NZ_CP032669|CRISPRCasFinder,CRT,PILER-CR matches to NC_003216 (Listeria phage A118, complete genome) position: , mismatch: 0, identity: 1.0

atactaaaacttcgctcattttccgcaactcctt	CRISPR spacer
atactaaaacttcgctcattttccgcaactcctt	Protospacer
**********************************

6. spacer 3.25|603783|34|NZ_CP032669|CRISPRCasFinder,CRT,PILER-CR matches to AJ242593 (Bacteriophage A118 complete genome) position: , mismatch: 0, identity: 1.0

atactaaaacttcgctcattttccgcaactcctt	CRISPR spacer
atactaaaacttcgctcattttccgcaactcctt	Protospacer
**********************************

7. spacer 3.25|603783|34|NZ_CP032669|CRISPRCasFinder,CRT,PILER-CR matches to MH341451 (Listeria phage PSU-VKH-LP019, complete genome) position: , mismatch: 0, identity: 1.0

atactaaaacttcgctcattttccgcaactcctt	CRISPR spacer
atactaaaacttcgctcattttccgcaactcctt	Protospacer
**********************************

8. spacer 3.26|603846|35|NZ_CP032669|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP011399 (Listeria monocytogenes strain CFSAN008100 plasmid pCFSAN008100, complete sequence) position: , mismatch: 0, identity: 1.0

ttaagaaatatgattgattctctggatatcacttt	CRISPR spacer
ttaagaaatatgattgattctctggatatcacttt	Protospacer
***********************************

9. spacer 3.26|603846|35|NZ_CP032669|CRISPRCasFinder,CRT,PILER-CR matches to DQ003642 (Listeria phage A006, complete genome) position: , mismatch: 0, identity: 1.0

ttaagaaatatgattgattctctggatatcacttt	CRISPR spacer
ttaagaaatatgattgattctctggatatcacttt	Protospacer
***********************************

10. spacer 3.27|603910|37|NZ_CP032669|CRISPRCasFinder,CRT,PILER-CR matches to NC_003216 (Listeria phage A118, complete genome) position: , mismatch: 0, identity: 1.0

cctccacaatcactcggctttcttcgtctttatcgac	CRISPR spacer
cctccacaatcactcggctttcttcgtctttatcgac	Protospacer
*************************************

11. spacer 3.27|603910|37|NZ_CP032669|CRISPRCasFinder,CRT,PILER-CR matches to AJ242593 (Bacteriophage A118 complete genome) position: , mismatch: 0, identity: 1.0

cctccacaatcactcggctttcttcgtctttatcgac	CRISPR spacer
cctccacaatcactcggctttcttcgtctttatcgac	Protospacer
*************************************

12. spacer 3.27|603910|37|NZ_CP032669|CRISPRCasFinder,CRT,PILER-CR matches to DQ003642 (Listeria phage A006, complete genome) position: , mismatch: 0, identity: 1.0

cctccacaatcactcggctttcttcgtctttatcgac	CRISPR spacer
cctccacaatcactcggctttcttcgtctttatcgac	Protospacer
*************************************

13. spacer 3.42|604884|36|NZ_CP032669|CRISPRCasFinder,CRT,PILER-CR matches to NC_021539 (Listeria phage LP-030-2, complete genome) position: , mismatch: 0, identity: 1.0

gttgaaaagcgcaccattgttttaatttttttaatt	CRISPR spacer
gttgaaaagcgcaccattgttttaatttttttaatt	Protospacer
************************************

14. spacer 3.42|604884|36|NZ_CP032669|CRISPRCasFinder,CRT,PILER-CR matches to NC_009812 (Listeria phage B025, complete genome) position: , mismatch: 0, identity: 1.0

gttgaaaagcgcaccattgttttaatttttttaatt	CRISPR spacer
gttgaaaagcgcaccattgttttaatttttttaatt	Protospacer
************************************

15. spacer 3.42|604884|36|NZ_CP032669|CRISPRCasFinder,CRT,PILER-CR matches to KJ094023 (Listeria phage LP-101, complete genome) position: , mismatch: 0, identity: 1.0

gttgaaaagcgcaccattgttttaatttttttaatt	CRISPR spacer
gttgaaaagcgcaccattgttttaatttttttaatt	Protospacer
************************************

16. spacer 3.43|604949|37|NZ_CP032669|CRISPRCasFinder,CRT,PILER-CR matches to MH299806 (Listeria phage LP-KV022, complete genome) position: , mismatch: 0, identity: 1.0

ttttgtcgcataaattctttgatgtggcggactgacg	CRISPR spacer
ttttgtcgcataaattctttgatgtggcggactgacg	Protospacer
*************************************

17. spacer 3.43|604949|37|NZ_CP032669|CRISPRCasFinder,CRT,PILER-CR matches to MN114083 (Listeria phage LP-013, complete genome) position: , mismatch: 0, identity: 1.0

ttttgtcgcataaattctttgatgtggcggactgacg	CRISPR spacer
ttttgtcgcataaattctttgatgtggcggactgacg	Protospacer
*************************************

18. spacer 3.43|604949|37|NZ_CP032669|CRISPRCasFinder,CRT,PILER-CR matches to NC_021785 (Listeria phage LP-110, complete genome) position: , mismatch: 0, identity: 1.0

ttttgtcgcataaattctttgatgtggcggactgacg	CRISPR spacer
ttttgtcgcataaattctttgatgtggcggactgacg	Protospacer
*************************************

19. spacer 3.43|604949|37|NZ_CP032669|CRISPRCasFinder,CRT,PILER-CR matches to MN128593 (Listeria phage LP-031, complete genome) position: , mismatch: 0, identity: 1.0

ttttgtcgcataaattctttgatgtggcggactgacg	CRISPR spacer
ttttgtcgcataaattctttgatgtggcggactgacg	Protospacer
*************************************

20. spacer 3.43|604949|37|NZ_CP032669|CRISPRCasFinder,CRT,PILER-CR matches to MN904502 (Listeria phage LP-018, complete genome) position: , mismatch: 0, identity: 1.0

ttttgtcgcataaattctttgatgtggcggactgacg	CRISPR spacer
ttttgtcgcataaattctttgatgtggcggactgacg	Protospacer
*************************************

21. spacer 3.43|604949|37|NZ_CP032669|CRISPRCasFinder,CRT,PILER-CR matches to KJ094021 (Listeria phage LP-114, complete genome) position: , mismatch: 0, identity: 1.0

ttttgtcgcataaattctttgatgtggcggactgacg	CRISPR spacer
ttttgtcgcataaattctttgatgtggcggactgacg	Protospacer
*************************************

22. spacer 3.43|604949|37|NZ_CP032669|CRISPRCasFinder,CRT,PILER-CR matches to MN114082 (Listeria phage LP-010, complete genome) position: , mismatch: 0, identity: 1.0

ttttgtcgcataaattctttgatgtggcggactgacg	CRISPR spacer
ttttgtcgcataaattctttgatgtggcggactgacg	Protospacer
*************************************

23. spacer 3.47|605209|37|NZ_CP032669|CRISPRCasFinder,CRT,PILER-CR matches to NZ_LR134403 (Listeria monocytogenes strain NCTC7974 plasmid 6, complete sequence) position: , mismatch: 0, identity: 1.0

tcgttaatcataattgatgaaagtcatcatgtgttag	CRISPR spacer
tcgttaatcataattgatgaaagtcatcatgtgttag	Protospacer
*************************************

24. spacer 3.47|605209|37|NZ_CP032669|CRISPRCasFinder,CRT,PILER-CR matches to KJ094023 (Listeria phage LP-101, complete genome) position: , mismatch: 0, identity: 1.0

tcgttaatcataattgatgaaagtcatcatgtgttag	CRISPR spacer
tcgttaatcataattgatgaaagtcatcatgtgttag	Protospacer
*************************************

25. spacer 2.2|585500|36|NZ_CP032669|PILER-CR,CRISPRCasFinder,CRT matches to NC_003216 (Listeria phage A118, complete genome) position: , mismatch: 1, identity: 0.972

gtagaaacgtagaatcttacttttttgtcgttcatt	CRISPR spacer
gtagaaacgtagaatcttacttttttatcgttcatt	Protospacer
**************************.*********

26. spacer 2.2|585500|36|NZ_CP032669|PILER-CR,CRISPRCasFinder,CRT matches to AJ242593 (Bacteriophage A118 complete genome) position: , mismatch: 1, identity: 0.972

gtagaaacgtagaatcttacttttttgtcgttcatt	CRISPR spacer
gtagaaacgtagaatcttacttttttatcgttcatt	Protospacer
**************************.*********

27. spacer 2.2|585500|36|NZ_CP032669|PILER-CR,CRISPRCasFinder,CRT matches to NC_047872 (Listeria phage LMTA-94, complete genome) position: , mismatch: 1, identity: 0.972

gtagaaacgtagaatcttacttttttgtcgttcatt	CRISPR spacer
gtagaaacgtagaatcttacttttttatcgttcatt	Protospacer
**************************.*********

28. spacer 2.2|585500|36|NZ_CP032669|PILER-CR,CRISPRCasFinder,CRT matches to KJ591605 (Listeria phage LMTA-57, complete genome) position: , mismatch: 1, identity: 0.972

gtagaaacgtagaatcttacttttttgtcgttcatt	CRISPR spacer
gtagaaacgtagaatcttacttttttatcgttcatt	Protospacer
**************************.*********

29. spacer 2.2|585500|36|NZ_CP032669|PILER-CR,CRISPRCasFinder,CRT matches to NC_009812 (Listeria phage B025, complete genome) position: , mismatch: 1, identity: 0.972

gtagaaacgtagaatcttacttttttgtcgttcatt	CRISPR spacer
gtagaaacgtagaatcttacttttttatcgttcatt	Protospacer
**************************.*********

30. spacer 2.2|585500|36|NZ_CP032669|PILER-CR,CRISPRCasFinder,CRT matches to NC_042048 (Listeria phage LMTA-34, complete genome) position: , mismatch: 1, identity: 0.972

gtagaaacgtagaatcttacttttttgtcgttcatt	CRISPR spacer
gtagaaacgtagaatcttacttttttatcgttcatt	Protospacer
**************************.*********

31. spacer 2.2|585500|36|NZ_CP032669|PILER-CR,CRISPRCasFinder,CRT matches to NC_024360 (Listeria phage LMSP-25, complete genome) position: , mismatch: 1, identity: 0.972

gtagaaacgtagaatcttacttttttgtcgttcatt	CRISPR spacer
gtagaaacgtagaatcttacttttttatcgttcatt	Protospacer
**************************.*********

32. spacer 2.2|585500|36|NZ_CP032669|PILER-CR,CRISPRCasFinder,CRT matches to DQ003642 (Listeria phage A006, complete genome) position: , mismatch: 1, identity: 0.972

gtagaaacgtagaatcttacttttttgtcgttcatt	CRISPR spacer
gtagaaacgtagaatcttacttttttatcgttcatt	Protospacer
**************************.*********

33. spacer 2.4|585630|35|NZ_CP032669|PILER-CR,CRISPRCasFinder,CRT matches to NC_003216 (Listeria phage A118, complete genome) position: , mismatch: 1, identity: 0.971

ttcgccatgacgaaatctagcgcttgtcctactaa	CRISPR spacer
ttcgccatgacgaaatctagcgcttgtcctaccaa	Protospacer
********************************.**

34. spacer 2.4|585630|35|NZ_CP032669|PILER-CR,CRISPRCasFinder,CRT matches to AJ242593 (Bacteriophage A118 complete genome) position: , mismatch: 1, identity: 0.971

ttcgccatgacgaaatctagcgcttgtcctactaa	CRISPR spacer
ttcgccatgacgaaatctagcgcttgtcctaccaa	Protospacer
********************************.**

35. spacer 2.4|585630|35|NZ_CP032669|PILER-CR,CRISPRCasFinder,CRT matches to X85008 (Bacteriophage A118 hol118 and ply118 genes) position: , mismatch: 1, identity: 0.971

ttcgccatgacgaaatctagcgcttgtcctactaa	CRISPR spacer
ttcgccatgacgaaatctagcgcttgtcctaccaa	Protospacer
********************************.**

36. spacer 2.5|585694|36|NZ_CP032669|PILER-CR,CRISPRCasFinder,CRT matches to DQ003642 (Listeria phage A006, complete genome) position: , mismatch: 1, identity: 0.972

ggcacagtcttcacgatttcggggatggggaaaact	CRISPR spacer
ggcacagtcttcacgatttcggggatggggaaaacg	Protospacer
***********************************

37. spacer 3.14|603058|37|NZ_CP032669|CRISPRCasFinder,CRT,PILER-CR matches to JB137888 (Sequence 7 from Patent WO2012159774) position: , mismatch: 1, identity: 0.973

gtttatagtatgtaaaacaaacacaggaaaatatatc	CRISPR spacer
gtttatagtatgtaaaaccaacacaggaaaatatatc	Protospacer
****************** ******************

38. spacer 3.14|603058|37|NZ_CP032669|CRISPRCasFinder,CRT,PILER-CR matches to KJ094025 (Listeria phage LP-032 contig 2, partial genome) position: , mismatch: 1, identity: 0.973

gtttatagtatgtaaaacaaacacaggaaaatatatc	CRISPR spacer
gtttatagtatgtaaaaccaacacaggaaaatatatc	Protospacer
****************** ******************

39. spacer 3.14|603058|37|NZ_CP032669|CRISPRCasFinder,CRT,PILER-CR matches to NC_021787 (Listeria phage LP-037, complete genome) position: , mismatch: 1, identity: 0.973

gtttatagtatgtaaaacaaacacaggaaaatatatc	CRISPR spacer
gtttatagtatgtaaaaccaacacaggaaaatatatc	Protospacer
****************** ******************

40. spacer 3.14|603058|37|NZ_CP032669|CRISPRCasFinder,CRT,PILER-CR matches to JX442241 (Listeria phage P70, complete genome) position: , mismatch: 1, identity: 0.973

gtttatagtatgtaaaacaaacacaggaaaatatatc	CRISPR spacer
gtttatagtatgtaaaaccaacacaggaaaatatatc	Protospacer
****************** ******************

41. spacer 3.14|603058|37|NZ_CP032669|CRISPRCasFinder,CRT,PILER-CR matches to KJ094020 (Listeria phage LP-026, complete genome) position: , mismatch: 1, identity: 0.973

gtttatagtatgtaaaacaaacacaggaaaatatatc	CRISPR spacer
gtttatagtatgtaaaaccaacacaggaaaatatatc	Protospacer
****************** ******************

42. spacer 3.18|603323|37|NZ_CP032669|CRISPRCasFinder,CRT,PILER-CR matches to NZ_LR134403 (Listeria monocytogenes strain NCTC7974 plasmid 6, complete sequence) position: , mismatch: 1, identity: 0.973

atttaagtattaatgtttttaaaaagtttgatttatt	CRISPR spacer
atttaagtattaatgtttttaaaaagtctgatttatt	Protospacer
***************************.*********

43. spacer 3.18|603323|37|NZ_CP032669|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP011399 (Listeria monocytogenes strain CFSAN008100 plasmid pCFSAN008100, complete sequence) position: , mismatch: 1, identity: 0.973

atttaagtattaatgtttttaaaaagtttgatttatt	CRISPR spacer
atttaagtattaatgtttttaaaaagtctgatttatt	Protospacer
***************************.*********

44. spacer 3.18|603323|37|NZ_CP032669|CRISPRCasFinder,CRT,PILER-CR matches to KJ094023 (Listeria phage LP-101, complete genome) position: , mismatch: 1, identity: 0.973

atttaagtattaatgtttttaaaaagtttgatttatt	CRISPR spacer
atttaagtattaatgtttttaaaaagtctgatttatt	Protospacer
***************************.*********

45. spacer 3.23|603655|35|NZ_CP032669|CRISPRCasFinder,CRT,PILER-CR matches to MN904502 (Listeria phage LP-018, complete genome) position: , mismatch: 1, identity: 0.971

aaaattagcgttccaaaaataagacctgtcgcaac	CRISPR spacer
aaaattagcgttccaaaaattagacctgtcgcaac	Protospacer
******************** **************

46. spacer 3.23|603655|35|NZ_CP032669|CRISPRCasFinder,CRT,PILER-CR matches to JX442241 (Listeria phage P70, complete genome) position: , mismatch: 1, identity: 0.971

aaaattagcgttccaaaaataagacctgtcgcaac	CRISPR spacer
aaaattagcgttccaaaaattagacctgtcgcaac	Protospacer
******************** **************

47. spacer 3.27|603910|37|NZ_CP032669|CRISPRCasFinder,CRT,PILER-CR matches to MH341451 (Listeria phage PSU-VKH-LP019, complete genome) position: , mismatch: 1, identity: 0.973

cctccacaatcactcggctttcttcgtctttatcgac	CRISPR spacer
cctccacaatcacacggctttcttcgtctttatcgac	Protospacer
************* ***********************

48. spacer 3.28|603976|35|NZ_CP032669|CRISPRCasFinder,CRT,PILER-CR matches to JX442241 (Listeria phage P70, complete genome) position: , mismatch: 1, identity: 0.971

acttgaaggacgtgcttcaaaatatttagttgcat	CRISPR spacer
gcttgaaggacgtgcttcaaaatatttagttgcat	Protospacer
.**********************************

49. spacer 3.37|604558|36|NZ_CP032669|CRISPRCasFinder,CRT,PILER-CR matches to KJ094023 (Listeria phage LP-101, complete genome) position: , mismatch: 1, identity: 0.972

ccagaaatggagtgcgcggttgattttggatttagc	CRISPR spacer
cccgaaatggagtgcgcggttgattttggatttagc	Protospacer
** *********************************

50. spacer 3.39|604689|35|NZ_CP032669|CRISPRCasFinder,CRT,PILER-CR matches to MH299806 (Listeria phage LP-KV022, complete genome) position: , mismatch: 1, identity: 0.971

aaaccagagccagaaaaagaagttgtgaaagaaga	CRISPR spacer
aaaccagaaccagaaaaagaagttgtgaaagaaga	Protospacer
********.**************************

51. spacer 3.39|604689|35|NZ_CP032669|CRISPRCasFinder,CRT,PILER-CR matches to NC_021785 (Listeria phage LP-110, complete genome) position: , mismatch: 1, identity: 0.971

aaaccagagccagaaaaagaagttgtgaaagaaga	CRISPR spacer
aaaccagaaccagaaaaagaagttgtgaaagaaga	Protospacer
********.**************************

52. spacer 3.39|604689|35|NZ_CP032669|CRISPRCasFinder,CRT,PILER-CR matches to MN128593 (Listeria phage LP-031, complete genome) position: , mismatch: 1, identity: 0.971

aaaccagagccagaaaaagaagttgtgaaagaaga	CRISPR spacer
aaaccagaaccagaaaaagaagttgtgaaagaaga	Protospacer
********.**************************

53. spacer 3.39|604689|35|NZ_CP032669|CRISPRCasFinder,CRT,PILER-CR matches to MN904502 (Listeria phage LP-018, complete genome) position: , mismatch: 1, identity: 0.971

aaaccagagccagaaaaagaagttgtgaaagaaga	CRISPR spacer
aaaccagaaccagaaaaagaagttgtgaaagaaga	Protospacer
********.**************************

54. spacer 3.41|604818|37|NZ_CP032669|CRISPRCasFinder,CRT,PILER-CR matches to KJ094023 (Listeria phage LP-101, complete genome) position: , mismatch: 1, identity: 0.973

acgtcacttgtttttgcctttgttttcgccctttcct	CRISPR spacer
acgtcacttgtttttgcctttgtttttgccctttcct	Protospacer
**************************.**********

55. spacer 3.42|604884|36|NZ_CP032669|CRISPRCasFinder,CRT,PILER-CR matches to MT500540 (Listeria phage LP-HM00113468, complete genome) position: , mismatch: 1, identity: 0.972

gttgaaaagcgcaccattgttttaatttttttaatt	CRISPR spacer
gttgaaaagcgcaccattgttttaagttttttaatt	Protospacer
************************* **********

56. spacer 3.42|604884|36|NZ_CP032669|CRISPRCasFinder,CRT,PILER-CR matches to NZ_LR134403 (Listeria monocytogenes strain NCTC7974 plasmid 6, complete sequence) position: , mismatch: 1, identity: 0.972

gttgaaaagcgcaccattgttttaatttttttaatt	CRISPR spacer
gttgaaaagcgcaccattgctttaatttttttaatt	Protospacer
*******************.****************

57. spacer 3.42|604884|36|NZ_CP032669|CRISPRCasFinder,CRT,PILER-CR matches to AJ312240 (Bacteriophage PSA complete genome) position: , mismatch: 1, identity: 0.972

gttgaaaagcgcaccattgttttaatttttttaatt	CRISPR spacer
gttgaaaagcgcaccattgctttaatttttttaatt	Protospacer
*******************.****************

58. spacer 3.46|605144|36|NZ_CP032669|CRISPRCasFinder,CRT,PILER-CR matches to JB137888 (Sequence 7 from Patent WO2012159774) position: , mismatch: 1, identity: 0.972

ttctattgcagaacagaatgaattgtatgcacaagg	CRISPR spacer
ttctattgcagaacagaatgaattatatgcacaagg	Protospacer
************************.***********

59. spacer 3.46|605144|36|NZ_CP032669|CRISPRCasFinder,CRT,PILER-CR matches to KJ094025 (Listeria phage LP-032 contig 2, partial genome) position: , mismatch: 1, identity: 0.972

ttctattgcagaacagaatgaattgtatgcacaagg	CRISPR spacer
ttctattgcagaacagaatgaattatatgcacaagg	Protospacer
************************.***********

60. spacer 3.46|605144|36|NZ_CP032669|CRISPRCasFinder,CRT,PILER-CR matches to MH299806 (Listeria phage LP-KV022, complete genome) position: , mismatch: 1, identity: 0.972

ttctattgcagaacagaatgaattgtatgcacaagg	CRISPR spacer
ttctattgcagaacagaatgaattatatgcacaagg	Protospacer
************************.***********

61. spacer 3.46|605144|36|NZ_CP032669|CRISPRCasFinder,CRT,PILER-CR matches to MN114083 (Listeria phage LP-013, complete genome) position: , mismatch: 1, identity: 0.972

ttctattgcagaacagaatgaattgtatgcacaagg	CRISPR spacer
ttctattgcagaacagaatgaattatatgcacaagg	Protospacer
************************.***********

62. spacer 3.46|605144|36|NZ_CP032669|CRISPRCasFinder,CRT,PILER-CR matches to NC_021785 (Listeria phage LP-110, complete genome) position: , mismatch: 1, identity: 0.972

ttctattgcagaacagaatgaattgtatgcacaagg	CRISPR spacer
ttctattgcagaacagaatgaattatatgcacaagg	Protospacer
************************.***********

63. spacer 3.46|605144|36|NZ_CP032669|CRISPRCasFinder,CRT,PILER-CR matches to MN128593 (Listeria phage LP-031, complete genome) position: , mismatch: 1, identity: 0.972

ttctattgcagaacagaatgaattgtatgcacaagg	CRISPR spacer
ttctattgcagaacagaatgaattatatgcacaagg	Protospacer
************************.***********

64. spacer 3.46|605144|36|NZ_CP032669|CRISPRCasFinder,CRT,PILER-CR matches to NC_021787 (Listeria phage LP-037, complete genome) position: , mismatch: 1, identity: 0.972

ttctattgcagaacagaatgaattgtatgcacaagg	CRISPR spacer
ttctattgcagaacagaatgaattatatgcacaagg	Protospacer
************************.***********

65. spacer 3.46|605144|36|NZ_CP032669|CRISPRCasFinder,CRT,PILER-CR matches to MN904502 (Listeria phage LP-018, complete genome) position: , mismatch: 1, identity: 0.972

ttctattgcagaacagaatgaattgtatgcacaagg	CRISPR spacer
ttctattgcagaacagaatgaattatatgcacaagg	Protospacer
************************.***********

66. spacer 3.46|605144|36|NZ_CP032669|CRISPRCasFinder,CRT,PILER-CR matches to JX442241 (Listeria phage P70, complete genome) position: , mismatch: 1, identity: 0.972

ttctattgcagaacagaatgaattgtatgcacaagg	CRISPR spacer
ttctattgcagaacagaatgaattatatgcacaagg	Protospacer
************************.***********

67. spacer 3.46|605144|36|NZ_CP032669|CRISPRCasFinder,CRT,PILER-CR matches to KJ094020 (Listeria phage LP-026, complete genome) position: , mismatch: 1, identity: 0.972

ttctattgcagaacagaatgaattgtatgcacaagg	CRISPR spacer
ttctattgcagaacagaatgaattatatgcacaagg	Protospacer
************************.***********

68. spacer 3.46|605144|36|NZ_CP032669|CRISPRCasFinder,CRT,PILER-CR matches to KJ094021 (Listeria phage LP-114, complete genome) position: , mismatch: 1, identity: 0.972

ttctattgcagaacagaatgaattgtatgcacaagg	CRISPR spacer
ttctattgcagaacagaatgaattatatgcacaagg	Protospacer
************************.***********

69. spacer 3.46|605144|36|NZ_CP032669|CRISPRCasFinder,CRT,PILER-CR matches to MN114082 (Listeria phage LP-010, complete genome) position: , mismatch: 1, identity: 0.972

ttctattgcagaacagaatgaattgtatgcacaagg	CRISPR spacer
ttctattgcagaacagaatgaattatatgcacaagg	Protospacer
************************.***********

70. spacer 3.47|605209|37|NZ_CP032669|CRISPRCasFinder,CRT,PILER-CR matches to AJ312240 (Bacteriophage PSA complete genome) position: , mismatch: 1, identity: 0.973

tcgttaatcataattgatgaaagtcatcatgtgttag	CRISPR spacer
tcattaatcataattgatgaaagtcatcatgtgttag	Protospacer
**.**********************************

71. spacer 3.55|605726|37|NZ_CP032669|CRISPRCasFinder,CRT,PILER-CR matches to KY705255 (Streptococcus phage P0095, complete genome) position: , mismatch: 1, identity: 0.973

caaaacagagaacgcgtgttcattatcggacatctta	CRISPR spacer
caaaacagagaacgagtgttcattatcggacatctta	Protospacer
************** **********************

72. spacer 3.55|605726|37|NZ_CP032669|CRISPRCasFinder,CRT,PILER-CR matches to KY705251 (Streptococcus phage P0091, complete genome) position: , mismatch: 1, identity: 0.973

caaaacagagaacgcgtgttcattatcggacatctta	CRISPR spacer
caaaacagagaacgagtgttcattatcggacatctta	Protospacer
************** **********************

73. spacer 3.55|605726|37|NZ_CP032669|CRISPRCasFinder,CRT,PILER-CR matches to KX879643 (Streptococcus phage CHPC1151, complete genome) position: , mismatch: 1, identity: 0.973

caaaacagagaacgcgtgttcattatcggacatctta	CRISPR spacer
caaaacagagaacgagtgttcattatcggacatctta	Protospacer
************** **********************

74. spacer 3.55|605726|37|NZ_CP032669|CRISPRCasFinder,CRT,PILER-CR matches to MK202161 (Streptococcus phage CHPC1282, complete genome) position: , mismatch: 1, identity: 0.973

caaaacagagaacgcgtgttcattatcggacatctta	CRISPR spacer
caaaacagagaacgagtgttcattatcggacatctta	Protospacer
************** **********************

75. spacer 3.55|605726|37|NZ_CP032669|CRISPRCasFinder,CRT,PILER-CR matches to KY705252 (Streptococcus phage P0092, complete genome) position: , mismatch: 1, identity: 0.973

caaaacagagaacgcgtgttcattatcggacatctta	CRISPR spacer
caaaacagagaacgagtgttcattatcggacatctta	Protospacer
************** **********************

76. spacer 3.55|605726|37|NZ_CP032669|CRISPRCasFinder,CRT,PILER-CR matches to MH937506 (Streptococcus phage CHPC1148, complete genome) position: , mismatch: 1, identity: 0.973

caaaacagagaacgcgtgttcattatcggacatctta	CRISPR spacer
caaaacagagaacgagtgttcattatcggacatctta	Protospacer
************** **********************

77. spacer 3.55|605726|37|NZ_CP032669|CRISPRCasFinder,CRT,PILER-CR matches to KY705253 (Streptococcus phage P0093, complete genome) position: , mismatch: 1, identity: 0.973

caaaacagagaacgcgtgttcattatcggacatctta	CRISPR spacer
caaaacagagaacgagtgttcattatcggacatctta	Protospacer
************** **********************

78. spacer 3.55|605726|37|NZ_CP032669|CRISPRCasFinder,CRT,PILER-CR matches to KY705254 (Streptococcus phage P0094, complete genome) position: , mismatch: 1, identity: 0.973

caaaacagagaacgcgtgttcattatcggacatctta	CRISPR spacer
caaaacagagaacgagtgttcattatcggacatctta	Protospacer
************** **********************

79. spacer 2.5|585694|36|NZ_CP032669|PILER-CR,CRISPRCasFinder,CRT matches to NC_003216 (Listeria phage A118, complete genome) position: , mismatch: 2, identity: 0.944

ggcacagtcttcacgatttcggggatggggaaaact	CRISPR spacer
ggcacagtcttcacgatttcagggatggggaaaacg	Protospacer
********************.**************

80. spacer 2.5|585694|36|NZ_CP032669|PILER-CR,CRISPRCasFinder,CRT matches to AJ242593 (Bacteriophage A118 complete genome) position: , mismatch: 2, identity: 0.944

ggcacagtcttcacgatttcggggatggggaaaact	CRISPR spacer
ggcacagtcttcacgatttcagggatggggaaaacg	Protospacer
********************.**************

81. spacer 2.5|585694|36|NZ_CP032669|PILER-CR,CRISPRCasFinder,CRT matches to X85008 (Bacteriophage A118 hol118 and ply118 genes) position: , mismatch: 2, identity: 0.944

ggcacagtcttcacgatttcggggatggggaaaact	CRISPR spacer
ggcacagtcttcacgatttcagggatggggaaaacg	Protospacer
********************.**************

82. spacer 2.5|585694|36|NZ_CP032669|PILER-CR,CRISPRCasFinder,CRT matches to KJ094023 (Listeria phage LP-101, complete genome) position: , mismatch: 2, identity: 0.944

ggcacagtcttcacgatttcggggatggggaaaact	CRISPR spacer
ggcacagtcttcacgattgcggggatggggaaaacg	Protospacer
****************** ****************

83. spacer 3.11|602862|37|NZ_CP032669|CRISPRCasFinder,CRT,PILER-CR matches to MH341453 (Listeria phage PSU-VKH-LP041, complete genome) position: , mismatch: 2, identity: 0.946

agagtttccagctgtaaggccagatattgataatttc	CRISPR spacer
agagtttccagctgtaagaccagatattgataatttt	Protospacer
******************.*****************.

84. spacer 3.28|603976|35|NZ_CP032669|CRISPRCasFinder,CRT,PILER-CR matches to NC_021787 (Listeria phage LP-037, complete genome) position: , mismatch: 2, identity: 0.943

acttgaaggacgtgcttcaaaatatttagttgcat	CRISPR spacer
gcttgaagggcgtgcttcaaaatatttagttgcat	Protospacer
.********.*************************

85. spacer 3.31|604167|35|NZ_CP032669|CRISPRCasFinder,CRT,PILER-CR matches to MH341453 (Listeria phage PSU-VKH-LP041, complete genome) position: , mismatch: 2, identity: 0.943

aaaaaaacaactgcgcaagaagggtatgagcaatt	CRISPR spacer
aaaaaaacaactatgcaagaagggtatgagcaatt	Protospacer
************..*********************

86. spacer 3.31|604167|35|NZ_CP032669|CRISPRCasFinder,CRT,PILER-CR matches to NC_009813 (Listeria phage B054, complete genome) position: , mismatch: 2, identity: 0.943

aaaaaaacaactgcgcaagaagggtatgagcaatt	CRISPR spacer
aaaaaaacaactatgcaagaagggtatgagcaatt	Protospacer
************..*********************

87. spacer 3.38|604623|37|NZ_CP032669|CRISPRCasFinder,CRT,PILER-CR matches to JQ797329 (Listeria phage vB_LmoM_AG20, complete genome) position: , mismatch: 2, identity: 0.946

aagaacattagatgaacttaaagcgtctgttgaacaa	CRISPR spacer
aggaacattagatgagcttaaagcgtctgttgaacaa	Protospacer
*.*************.*********************

88. spacer 3.38|604623|37|NZ_CP032669|CRISPRCasFinder,CRT,PILER-CR matches to KJ535721 (Listeria phage List-36, complete genome) position: , mismatch: 2, identity: 0.946

aagaacattagatgaacttaaagcgtctgttgaacaa	CRISPR spacer
aggaacattagatgagcttaaagcgtctgttgaacaa	Protospacer
*.*************.*********************

89. spacer 3.39|604689|35|NZ_CP032669|CRISPRCasFinder,CRT,PILER-CR matches to JB137888 (Sequence 7 from Patent WO2012159774) position: , mismatch: 2, identity: 0.943

aaaccagagccagaaaaagaagttgtgaaagaaga	CRISPR spacer
aaaccggaaccagaaaaagaagttgtgaaagaaga	Protospacer
*****.**.**************************

90. spacer 3.41|604818|37|NZ_CP032669|CRISPRCasFinder,CRT,PILER-CR matches to NZ_LR134403 (Listeria monocytogenes strain NCTC7974 plasmid 6, complete sequence) position: , mismatch: 2, identity: 0.946

acgtcacttgtttttgcctttgttttcgccctttcct	CRISPR spacer
acgtcgcttgtttttgcctttgtttttgccctttcct	Protospacer
*****.********************.**********

91. spacer 3.43|604949|37|NZ_CP032669|CRISPRCasFinder,CRT,PILER-CR matches to JB137888 (Sequence 7 from Patent WO2012159774) position: , mismatch: 2, identity: 0.946

ttttgtcgcataaattctttgatgtggcggactgacg	CRISPR spacer
ttttgtcgcataaattctttgatgtggcgaactggcg	Protospacer
*****************************.****.**

92. spacer 3.55|605726|37|NZ_CP032669|CRISPRCasFinder,CRT,PILER-CR matches to MN689509 (Lactococcus phage CHPC1175, complete genome) position: , mismatch: 2, identity: 0.946

caaaacagagaacgcgtgttcattatcggacatctta	CRISPR spacer
caaaaccgagaacgtgtgttcattatcggacatctta	Protospacer
****** *******.**********************

93. spacer 3.55|605726|37|NZ_CP032669|CRISPRCasFinder,CRT,PILER-CR matches to MK448735 (Streptococcus phage Javan349, complete genome) position: , mismatch: 2, identity: 0.946

caaaacagagaacgcgtgttcattatcggacatctta	CRISPR spacer
caaaacagagaacgggtgttcattgtcggacatctta	Protospacer
************** *********.************

94. spacer 3.14|603058|37|NZ_CP032669|CRISPRCasFinder,CRT,PILER-CR matches to MH299806 (Listeria phage LP-KV022, complete genome) position: , mismatch: 3, identity: 0.919

gtttatagtatgtaaaacaaacacaggaaaatatatc-	CRISPR spacer
gtttatagtatgtaaaacccacacagg-aaatatatct	Protospacer
******************  ******* *********

95. spacer 3.14|603058|37|NZ_CP032669|CRISPRCasFinder,CRT,PILER-CR matches to MN114083 (Listeria phage LP-013, complete genome) position: , mismatch: 3, identity: 0.919

gtttatagtatgtaaaacaaacacaggaaaatatatc-	CRISPR spacer
gtttatagtatgtaaaacccacacagg-aaatatatct	Protospacer
******************  ******* *********

96. spacer 3.14|603058|37|NZ_CP032669|CRISPRCasFinder,CRT,PILER-CR matches to NC_021785 (Listeria phage LP-110, complete genome) position: , mismatch: 3, identity: 0.919

gtttatagtatgtaaaacaaacacaggaaaatatatc-	CRISPR spacer
gtttatagtatgtaaaacccacacagg-aaatatatct	Protospacer
******************  ******* *********

97. spacer 3.14|603058|37|NZ_CP032669|CRISPRCasFinder,CRT,PILER-CR matches to MN128593 (Listeria phage LP-031, complete genome) position: , mismatch: 3, identity: 0.919

gtttatagtatgtaaaacaaacacaggaaaatatatc-	CRISPR spacer
gtttatagtatgtaaaacccacacagg-aaatatatct	Protospacer
******************  ******* *********

98. spacer 3.14|603058|37|NZ_CP032669|CRISPRCasFinder,CRT,PILER-CR matches to MN904502 (Listeria phage LP-018, complete genome) position: , mismatch: 3, identity: 0.919

gtttatagtatgtaaaacaaacacaggaaaatatatc-	CRISPR spacer
gtttatagtatgtaaaacccacacagg-aaatatatct	Protospacer
******************  ******* *********

99. spacer 3.14|603058|37|NZ_CP032669|CRISPRCasFinder,CRT,PILER-CR matches to KJ094021 (Listeria phage LP-114, complete genome) position: , mismatch: 3, identity: 0.919

gtttatagtatgtaaaacaaacacaggaaaatatatc-	CRISPR spacer
gtttatagtatgtaaaacccacacagg-aaatatatct	Protospacer
******************  ******* *********

100. spacer 3.14|603058|37|NZ_CP032669|CRISPRCasFinder,CRT,PILER-CR matches to MN114082 (Listeria phage LP-010, complete genome) position: , mismatch: 3, identity: 0.919

gtttatagtatgtaaaacaaacacaggaaaatatatc-	CRISPR spacer
gtttatagtatgtaaaacccacacagg-aaatatatct	Protospacer
******************  ******* *********

101. spacer 3.37|604558|36|NZ_CP032669|CRISPRCasFinder,CRT,PILER-CR matches to MH341451 (Listeria phage PSU-VKH-LP019, complete genome) position: , mismatch: 3, identity: 0.917

ccagaaatggagtgcgcggttgattttggatttagc	CRISPR spacer
cccgaaatggagtgcgcggttgattttggatttaat	Protospacer
** *******************************..

102. spacer 3.37|604558|36|NZ_CP032669|CRISPRCasFinder,CRT,PILER-CR matches to KP399677 (Listeria phage vB_LmoS_188, complete genome) position: , mismatch: 3, identity: 0.917

ccagaaatggagtgcgcggttgattttggatttagc	CRISPR spacer
cccgaaatggagtgcgcggttgattttggatttaat	Protospacer
** *******************************..

103. spacer 3.37|604558|36|NZ_CP032669|CRISPRCasFinder,CRT,PILER-CR matches to KP399678 (Listeria phage vB_LmoS_293, complete genome) position: , mismatch: 3, identity: 0.917

ccagaaatggagtgcgcggttgattttggatttagc	CRISPR spacer
cccgaaatggagtgcgcggttgattttggatttaat	Protospacer
** *******************************..

104. spacer 3.37|604558|36|NZ_CP032669|CRISPRCasFinder,CRT,PILER-CR matches to KP399678 (Listeria phage vB_LmoS_293, complete genome) position: , mismatch: 3, identity: 0.917

ccagaaatggagtgcgcggttgattttggatttagc	CRISPR spacer
cccgaaatggagtgcgcggttgattttggatttaat	Protospacer
** *******************************..

105. spacer 3.43|604949|37|NZ_CP032669|CRISPRCasFinder,CRT,PILER-CR matches to KJ094026 (Listeria phage LP-032 contig 3, partial genome) position: , mismatch: 3, identity: 0.919

ttttgtcgcataaattctttgatgtggcggactgacg	CRISPR spacer
ttttgtcgcataaattctttgatgtggcgaattgatg	Protospacer
*****************************.*.***.*

106. spacer 3.43|604949|37|NZ_CP032669|CRISPRCasFinder,CRT,PILER-CR matches to NC_021787 (Listeria phage LP-037, complete genome) position: , mismatch: 3, identity: 0.919

ttttgtcgcataaattctttgatgtggcggactgacg	CRISPR spacer
ttttgtcgcataaattctttgatgtggcgaattgatg	Protospacer
*****************************.*.***.*

107. spacer 3.43|604949|37|NZ_CP032669|CRISPRCasFinder,CRT,PILER-CR matches to JX442241 (Listeria phage P70, complete genome) position: , mismatch: 3, identity: 0.919

ttttgtcgcataaattctttgatgtggcggactgacg	CRISPR spacer
ttttgtcgcataaattctttgatgtggcgaattgatg	Protospacer
*****************************.*.***.*

108. spacer 3.43|604949|37|NZ_CP032669|CRISPRCasFinder,CRT,PILER-CR matches to KJ094020 (Listeria phage LP-026, complete genome) position: , mismatch: 3, identity: 0.919

ttttgtcgcataaattctttgatgtggcggactgacg	CRISPR spacer
ttttgtcgcataaattctttgatgtggcgaattgatg	Protospacer
*****************************.*.***.*

109. spacer 3.45|605079|36|NZ_CP032669|CRISPRCasFinder,CRT,PILER-CR matches to KJ094020 (Listeria phage LP-026, complete genome) position: , mismatch: 3, identity: 0.917

taaccaagcattgccaaaaactcgtctgttgataat	CRISPR spacer
tatccaagcattgccaaaaactcatctgttgataac	Protospacer
** ********************.***********.

110. spacer 3.45|605079|36|NZ_CP032669|CRISPRCasFinder,CRT,PILER-CR matches to JB137888 (Sequence 7 from Patent WO2012159774) position: , mismatch: 3, identity: 0.917

taaccaagcattgccaaaaactcgtctgttgataat	CRISPR spacer
taaccaagcattgccaaaaattcctctgttgataaa	Protospacer
********************.** ***********

111. spacer 3.45|605079|36|NZ_CP032669|CRISPRCasFinder,CRT,PILER-CR matches to KJ094026 (Listeria phage LP-032 contig 3, partial genome) position: , mismatch: 3, identity: 0.917

taaccaagcattgccaaaaactcgtctgttgataat	CRISPR spacer
tatccaagcattgccaaaaactcatctgttgataac	Protospacer
** ********************.***********.

112. spacer 3.15|603124|35|NZ_CP032669|CRISPRCasFinder,CRT,PILER-CR matches to MH299806 (Listeria phage LP-KV022, complete genome) position: , mismatch: 4, identity: 0.886

taaattgttaagcttgtcaacaacctgcaagaact	CRISPR spacer
cacattgttaaacttgtcaacaacctgccagaact	Protospacer
.* ********.**************** ******

113. spacer 3.15|603124|35|NZ_CP032669|CRISPRCasFinder,CRT,PILER-CR matches to JB137888 (Sequence 7 from Patent WO2012159774) position: , mismatch: 4, identity: 0.886

taaattgttaagcttgtcaacaacctgcaagaact	CRISPR spacer
cacattgttaaacttgtcaacaacctgccagaact	Protospacer
.* ********.**************** ******

114. spacer 3.15|603124|35|NZ_CP032669|CRISPRCasFinder,CRT,PILER-CR matches to MN114083 (Listeria phage LP-013, complete genome) position: , mismatch: 4, identity: 0.886

taaattgttaagcttgtcaacaacctgcaagaact	CRISPR spacer
cacattgttaaacttgtcaacaacctgccagaact	Protospacer
.* ********.**************** ******

115. spacer 3.15|603124|35|NZ_CP032669|CRISPRCasFinder,CRT,PILER-CR matches to NC_021785 (Listeria phage LP-110, complete genome) position: , mismatch: 4, identity: 0.886

taaattgttaagcttgtcaacaacctgcaagaact	CRISPR spacer
cacattgttaaacttgtcaacaacctgccagaact	Protospacer
.* ********.**************** ******

116. spacer 3.15|603124|35|NZ_CP032669|CRISPRCasFinder,CRT,PILER-CR matches to KJ094021 (Listeria phage LP-114, complete genome) position: , mismatch: 4, identity: 0.886

taaattgttaagcttgtcaacaacctgcaagaact	CRISPR spacer
cacattgttaaacttgtcaacaacctgccagaact	Protospacer
.* ********.**************** ******

117. spacer 3.15|603124|35|NZ_CP032669|CRISPRCasFinder,CRT,PILER-CR matches to MN114082 (Listeria phage LP-010, complete genome) position: , mismatch: 4, identity: 0.886

taaattgttaagcttgtcaacaacctgcaagaact	CRISPR spacer
cacattgttaaacttgtcaacaacctgccagaact	Protospacer
.* ********.**************** ******

118. spacer 3.26|603846|35|NZ_CP032669|CRISPRCasFinder,CRT,PILER-CR matches to KJ094022 (Listeria phage LP-030-3, complete genome) position: , mismatch: 4, identity: 0.886

ttaagaaatatgattgattctctggatatcacttt	CRISPR spacer
ttgcgaaatatgattgattctcttgatataacttt	Protospacer
**. ******************* ***** *****

119. spacer 3.39|604689|35|NZ_CP032669|CRISPRCasFinder,CRT,PILER-CR matches to KJ094020 (Listeria phage LP-026, complete genome) position: , mismatch: 4, identity: 0.886

aaaccagagccagaaaaagaagttgtgaaagaaga	CRISPR spacer
aaaccagaaccagaaaaagaagttgtgaaagagcc	Protospacer
********.***********************.

120. spacer 3.39|604689|35|NZ_CP032669|CRISPRCasFinder,CRT,PILER-CR matches to KJ094026 (Listeria phage LP-032 contig 3, partial genome) position: , mismatch: 4, identity: 0.886

aaaccagagccagaaaaagaagttgtgaaagaaga	CRISPR spacer
aaaccagaaccagaaaaagaagttgtgaaagagcc	Protospacer
********.***********************.

121. spacer 3.47|605209|37|NZ_CP032669|CRISPRCasFinder,CRT,PILER-CR matches to NC_021539 (Listeria phage LP-030-2, complete genome) position: , mismatch: 4, identity: 0.892

tcgttaatcataattgatgaaagtcatcatgtgttag	CRISPR spacer
gctttaatcattattgatgaaagtcatcatgtgctag	Protospacer
 * ******** *********************.***

122. spacer 3.15|603124|35|NZ_CP032669|CRISPRCasFinder,CRT,PILER-CR matches to NC_021787 (Listeria phage LP-037, complete genome) position: , mismatch: 5, identity: 0.857

taaattgttaagcttgtcaacaacctgcaagaact	CRISPR spacer
caccttgttaaacttgtcaacaacctgccagaact	Protospacer
.*  *******.**************** ******

123. spacer 3.56|605792|35|NZ_CP032669|CRISPRCasFinder,CRT,PILER-CR matches to MN694189 (Marine virus AFVG_250M578, complete genome) position: , mismatch: 6, identity: 0.829

ttttgaaatatgaggacttagaaaatgaaaaaaat	CRISPR spacer
taataaaaaatgagggcttagaaaatgaaaaaatt	Protospacer
*  *.*** ******.***************** *

124. spacer 3.5|602473|36|NZ_CP032669|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP042875 (Bacillus cereus strain 09 plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.806

agaactc--ttttgatgataacccaattccttcaaaaa	CRISPR spacer
--cactcaattttgatgataactcaattcctttaatat	Protospacer
   ****  *************.*********.** *

125. spacer 3.10|602797|36|NZ_CP032669|CRISPRCasFinder,CRT,PILER-CR matches to MN114083 (Listeria phage LP-013, complete genome) position: , mismatch: 7, identity: 0.806

ttatccattccgtcatatccccacgcatctgttcca	CRISPR spacer
ttatccattccatcatatccccaagcattgttgcct	Protospacer
***********.*********** ****.  * **

126. spacer 3.10|602797|36|NZ_CP032669|CRISPRCasFinder,CRT,PILER-CR matches to MN114082 (Listeria phage LP-010, complete genome) position: , mismatch: 7, identity: 0.806

ttatccattccgtcatatccccacgcatctgttcca	CRISPR spacer
ttatccattccatcatatccccaagcattgttgcct	Protospacer
***********.*********** ****.  * **

127. spacer 3.3|602346|34|NZ_CP032669|CRISPRCasFinder,CRT matches to AX059140 (Sequence 1 from Patent WO0075335) position: , mismatch: 8, identity: 0.765

atgaacagaaagatgagattattaaaaggactat	CRISPR spacer
ctaaactgaaagatgagattattaaaacgctgtt	Protospacer
 *.*** ******************** * .  *

128. spacer 3.3|602346|34|NZ_CP032669|CRISPRCasFinder,CRT matches to NC_004735 (Rhodothermus phage RM378, complete genome) position: , mismatch: 8, identity: 0.765

atgaacagaaagatgagattattaaaaggactat	CRISPR spacer
ctaaactgaaagatgagattattaaaacgctgtt	Protospacer
 *.*** ******************** * .  *

129. spacer 3.7|602602|35|NZ_CP032669|CRISPRCasFinder,CRT,PILER-CR matches to MN850566 (Escherichia phage garuso, complete genome) position: , mismatch: 8, identity: 0.771

ggtgtttctgtgtccacttctccttctacctgaat	CRISPR spacer
agggatactctgtccacttctccctctacctgtct	Protospacer
.* * * ** *************.********  *

130. spacer 3.23|603655|35|NZ_CP032669|CRISPRCasFinder,CRT,PILER-CR matches to MN693074 (Marine virus AFVG_25M380, complete genome) position: , mismatch: 8, identity: 0.771

aaaattagcgttccaaaaataagacctgtcgcaac	CRISPR spacer
gaaattagcgttccaaaaataagaccatgggaagt	Protospacer
.*************************    * *..

131. spacer 3.29|604040|35|NZ_CP032669|CRISPRCasFinder,CRT,PILER-CR matches to NZ_MF547664 (Clostridioides difficile strain LIBA-6289 plasmid LIBA6289, complete sequence) position: , mismatch: 8, identity: 0.771

tttatctttatctatttctccag-taatagagcacg	CRISPR spacer
aatatctttatctatttctccagttatttgtgctt-	Protospacer
  ********************* ** * * ** .

132. spacer 3.5|602473|36|NZ_CP032669|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP014283 (Bacillus thuringiensis strain Bt185 plasmid pBT1850636, complete sequence) position: , mismatch: 9, identity: 0.75

agaactcttttgatgataacccaattccttcaaaaa	CRISPR spacer
cactcacttttgatgataactcaattcctttaatat	Protospacer
 .  * **************.*********.** *

133. spacer 3.5|602473|36|NZ_CP032669|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP022446 (Bacillus cereus C1L plasmid pC1L1, complete sequence) position: , mismatch: 9, identity: 0.75

agaactcttttgatgataacccaattccttcaaaaa	CRISPR spacer
cactcacttttgatgataactcaattcctttaatat	Protospacer
 .  * **************.*********.** *

134. spacer 3.5|602473|36|NZ_CP032669|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP032614 (Bacillus thuringiensis strain QZL38 plasmid p.1, complete sequence) position: , mismatch: 9, identity: 0.75

agaactcttttgatgataacccaattccttcaaaaa	CRISPR spacer
cactcacttttgatgataactcaattcctttaatat	Protospacer
 .  * **************.*********.** *

135. spacer 3.5|602473|36|NZ_CP032669|CRISPRCasFinder,CRT,PILER-CR matches to NZ_AP014865 (Bacillus thuringiensis serovar tolworthi strain Pasteur Institute Standard strain plasmid pKK1, complete sequence) position: , mismatch: 9, identity: 0.75

agaactcttttgatgataacccaattccttcaaaaa	CRISPR spacer
cactcacttttgatgataactcaattcctttaatat	Protospacer
 .  * **************.*********.** *

136. spacer 3.5|602473|36|NZ_CP032669|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP023246 (Bacillus cereus strain HBL-AI plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.75

agaactcttttgatgataacccaattccttcaaaaa	CRISPR spacer
cactcacttttgatgataactcaattcctttaatat	Protospacer
 .  * **************.*********.** *

137. spacer 3.39|604689|35|NZ_CP032669|CRISPRCasFinder,CRT,PILER-CR matches to AP014248 (Uncultured Mediterranean phage uvMED isolate uvMED-GF-U-MedDCM-OCT-S34-C282, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 9, identity: 0.743

aaaccagagccagaaaaagaagttgtgaaagaaga	CRISPR spacer
gaaccagaacccgaaaaagaagttgttattactga	Protospacer
.*******.** ************** *  .  **

138. spacer 3.49|605340|35|NZ_CP032669|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP043831 (Bacillus sp. BS98 plasmid unnamed1) position: , mismatch: 9, identity: 0.743

tttatcactcctatgcttttcttatttctgtaaat	CRISPR spacer
tttatcactcctatgctttttatatactcctaata	Protospacer
********************. *** ... ***

139. spacer 3.50|605404|35|NZ_CP032669|CRISPRCasFinder,CRT,PILER-CR matches to NC_014533 (Gloeothece verrucosa PCC 7822 plasmid Cy782201, complete sequence) position: , mismatch: 9, identity: 0.743

gcttttttcaacaattttatcaccagatgtcatta	CRISPR spacer
agttttttcaacaattttatgaacagataattttt	Protospacer
. ****************** * *****. . **

140. spacer 3.56|605792|35|NZ_CP032669|CRISPRCasFinder,CRT,PILER-CR matches to MK448625 (Streptococcus satellite phage Javan738, complete genome) position: , mismatch: 9, identity: 0.743

ttttgaaatatgaggacttagaaaatgaaaaaaat	CRISPR spacer
gtatgaactatgaggacttagaaagtgaagacctg	Protospacer
 * **** ****************.****.*

141. spacer 3.56|605792|35|NZ_CP032669|CRISPRCasFinder,CRT,PILER-CR matches to MK448449 (Streptococcus satellite phage Javan356, complete genome) position: , mismatch: 9, identity: 0.743

ttttgaaatatgaggacttagaaaatgaaaaaaat	CRISPR spacer
gtatgaactatgaggacttagaaagtgaagacctg	Protospacer
 * **** ****************.****.*

142. spacer 3.56|605792|35|NZ_CP032669|CRISPRCasFinder,CRT,PILER-CR matches to MK448636 (Streptococcus satellite phage Javan749, complete genome) position: , mismatch: 9, identity: 0.743

ttttgaaatatgaggacttagaaaatgaaaaaaat	CRISPR spacer
gtctgaactatgaggacttagaaagtgaagacctg	Protospacer
 *.**** ****************.****.*

143. spacer 3.56|605792|35|NZ_CP032669|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP045037 (Lactobacillus mali strain LM596 plasmid unnamed2, complete sequence) position: , mismatch: 9, identity: 0.743

ttttgaaatatgaggacttagaaaatgaaaaaaat	CRISPR spacer
ttaagaaatataaggacttagtaaatgaagttatg	Protospacer
**  *******.********* *******.  *

144. spacer 3.56|605792|35|NZ_CP032669|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP018177 (Lactobacillus hordei strain TMW 1.1822 plasmid pL11822-1, complete sequence) position: , mismatch: 9, identity: 0.743

ttttgaaatatgaggacttagaaaatgaaaaaaat	CRISPR spacer
ttaagaaatataaggacttagtaaatgaagttatg	Protospacer
**  *******.********* *******.  *

145. spacer 3.56|605792|35|NZ_CP032669|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP018181 (Lactobacillus nagelii strain TMW 1.1827 plasmid pL11827-1, complete sequence) position: , mismatch: 9, identity: 0.743

ttttgaaatatgaggacttagaaaatgaaaaaaat	CRISPR spacer
ttaagaaatataaggacttagtaaatgaagttatg	Protospacer
**  *******.********* *******.  *

146. spacer 3.5|602473|36|NZ_CP032669|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP012100 (Bacillus thuringiensis strain HS18-1 plasmid pHS18-1, complete sequence) position: , mismatch: 10, identity: 0.722

agaactcttttgatgataacccaattccttcaaaaa	CRISPR spacer
cacttacttttgatgataactcaattcctttaatat	Protospacer
 .  . **************.*********.** *

147. spacer 3.5|602473|36|NZ_CP032669|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP007513 (Bacillus bombysepticus plasmid pBb, complete genome) position: , mismatch: 10, identity: 0.722

agaactcttttgatgataacccaattccttcaaaaa	CRISPR spacer
cacttacttttgatgataactcaattcctttaatat	Protospacer
 .  . **************.*********.** *

148. spacer 3.5|602473|36|NZ_CP032669|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP053952 (Bacillus cereus strain FDAARGOS_798 plasmid unnamed1, complete sequence) position: , mismatch: 10, identity: 0.722

agaactcttttgatgataacccaattccttcaaaaa	CRISPR spacer
cacttacttttgatgataactcaattcctttaatat	Protospacer
 .  . **************.*********.** *

149. spacer 3.5|602473|36|NZ_CP032669|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP045607 (Bacillus cereus strain SB1 plasmid p1, complete sequence) position: , mismatch: 10, identity: 0.722

agaactcttttgatgataacccaattccttcaaaaa	CRISPR spacer
cacttacttttgatgataactcaattcctttaatat	Protospacer
 .  . **************.*********.** *

150. spacer 3.5|602473|36|NZ_CP032669|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP011156 (Bacillus cereus strain HN001 plasmid pRML01, complete sequence) position: , mismatch: 10, identity: 0.722

agaactcttttgatgataacccaattccttcaaaaa	CRISPR spacer
cacttacttttgatgataactcaattcctttaatat	Protospacer
 .  . **************.*********.** *

151. spacer 3.5|602473|36|NZ_CP032669|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP053949 (Bacillus cereus strain FDAARGOS_799 plasmid unnamed1, complete sequence) position: , mismatch: 10, identity: 0.722

agaactcttttgatgataacccaattccttcaaaaa	CRISPR spacer
cacttacttttgatgataactcaattcctttaatat	Protospacer
 .  . **************.*********.** *

152. spacer 3.14|603058|37|NZ_CP032669|CRISPRCasFinder,CRT,PILER-CR matches to MK368614 (Vibrio phage 2 TSL-2019, complete genome) position: , mismatch: 10, identity: 0.73

gtttatagtatgtaaaacaaacacaggaaaatatatc	CRISPR spacer
ggacttagtatgtaaaacaaacaaaggaagatactaa	Protospacer
*  . ****************** *****.***.

153. spacer 3.39|604689|35|NZ_CP032669|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP046510 (Erwinia sp. J780 plasmid pla1, complete sequence) position: , mismatch: 10, identity: 0.714

aaaccagagccagaaaaagaagttgtgaaagaaga	CRISPR spacer
gatgatgagccagaaaatgaagttgtgaaagttcc	Protospacer
.*    *********** *************

154. spacer 3.39|604689|35|NZ_CP032669|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP045356 (Vibrio sp. THAF64 plasmid pTHAF64_a, complete sequence) position: , mismatch: 10, identity: 0.714

aaaccagagccagaaaaagaagttgtgaaagaaga	CRISPR spacer
gtagagcagccagaaaaagaagttgagaaagagac	Protospacer
. *  . ****************** ******..

155. spacer 3.39|604689|35|NZ_CP032669|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP046163 (Vibrio sp. THAF191c plasmid pTHAF191c_b, complete sequence) position: , mismatch: 10, identity: 0.714

aaaccagagccagaaaaagaagttgtgaaagaaga	CRISPR spacer
gtagagcagccagaaaaagaagttgagaaagagac	Protospacer
. *  . ****************** ******..

156. spacer 3.39|604689|35|NZ_CP032669|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP046066 (Vibrio sp. THAF191d plasmid pTHAF191d_b, complete sequence) position: , mismatch: 10, identity: 0.714

aaaccagagccagaaaaagaagttgtgaaagaaga	CRISPR spacer
gtagagcagccagaaaaagaagttgagaaagagac	Protospacer
. *  . ****************** ******..

157. spacer 3.5|602473|36|NZ_CP032669|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP050184 (Bacillus thuringiensis strain HER1410 plasmid pLUSID1, complete sequence) position: , mismatch: 11, identity: 0.694

agaactcttttgatgataacccaattccttcaaaaa	CRISPR spacer
cacttatttttgatgataactcaattcctttaatat	Protospacer
 .  . .*************.*********.** *

158. spacer 3.29|604040|35|NZ_CP032669|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP012103 (Bacillus thuringiensis strain HS18-1 plasmid pHS18-4, complete sequence) position: , mismatch: 11, identity: 0.686

tttatctttatctatttctccagtaatagagcacg	CRISPR spacer
aaaatctttatctattttttcagtaatatctatct	Protospacer
   **************.*.********     *

159. spacer 3.29|604040|35|NZ_CP032669|CRISPRCasFinder,CRT,PILER-CR matches to AP022644 (Bacillus wiedmannii PL1 plasmid pBwiPL1-1 DNA, complete sequence) position: , mismatch: 11, identity: 0.686

tttatctttatctatttctccagtaatagagcacg	CRISPR spacer
aaaatctttatctattttttcagtaatatctatct	Protospacer
   **************.*.********     *

160. spacer 3.29|604040|35|NZ_CP032669|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP012101 (Bacillus thuringiensis strain HS18-1 plasmid pHS18-2, complete sequence) position: , mismatch: 11, identity: 0.686

tttatctttatctatttctccagtaatagagcacg	CRISPR spacer
aaaatctttatctattttttcagtaatatctatct	Protospacer
   **************.*.********     *

161. spacer 3.29|604040|35|NZ_CP032669|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP031072 (Bacillus mycoides strain BPN401 plasmid pl395, complete sequence) position: , mismatch: 11, identity: 0.686

tttatctttatctatttctccagtaatagagcacg	CRISPR spacer
aaaatctttatctattttttcagtaatatctatct	Protospacer
   **************.*.********     *

162. spacer 3.29|604040|35|NZ_CP032669|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP013276 (Bacillus thuringiensis serovar israelensis strain AM65-52 plasmid pAM65-52-1-360K, complete sequence) position: , mismatch: 11, identity: 0.686

tttatctttatctatttctccagtaatagagcacg	CRISPR spacer
aaaatctttatctattttttcagtaatatctatct	Protospacer
   **************.*.********     *

163. spacer 3.29|604040|35|NZ_CP032669|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP039722 (Bacillus thuringiensis strain BT-59 plasmid p1, complete sequence) position: , mismatch: 11, identity: 0.686

tttatctttatctatttctccagtaatagagcacg	CRISPR spacer
aaaatctttatctattttttcagtaatatctatct	Protospacer
   **************.*.********     *

164. spacer 3.29|604040|35|NZ_CP032669|CRISPRCasFinder,CRT,PILER-CR matches to CP024686 (Bacillus wiedmannii bv. thuringiensis strain FCC41 plasmid pFCC41-2-313K, complete sequence) position: , mismatch: 11, identity: 0.686

tttatctttatctatttctccagtaatagagcacg	CRISPR spacer
aaaatctttatctattttttcagtaatatctatct	Protospacer
   **************.*.********     *

165. spacer 3.29|604040|35|NZ_CP032669|CRISPRCasFinder,CRT,PILER-CR matches to NC_018687 (Bacillus thuringiensis MC28 plasmid pMC189, complete sequence) position: , mismatch: 11, identity: 0.686

tttatctttatctatttctccagtaatagagcacg	CRISPR spacer
aaaatctttatctattttttcagtaatatctatct	Protospacer
   **************.*.********     *

166. spacer 3.29|604040|35|NZ_CP032669|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP009349 (Bacillus thuringiensis HD1002 plasmid 1, complete sequence) position: , mismatch: 11, identity: 0.686

tttatctttatctatttctccagtaatagagcacg	CRISPR spacer
aaaatctttatctattttttcagtaatatctatct	Protospacer
   **************.*.********     *

167. spacer 3.29|604040|35|NZ_CP032669|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP045023 (Bacillus thuringiensis strain JW-1 plasmid p1, complete sequence) position: , mismatch: 11, identity: 0.686

tttatctttatctatttctccagtaatagagcacg	CRISPR spacer
aaaatctttatctattttttcagtaatatctatct	Protospacer
   **************.*.********     *

168. spacer 3.39|604689|35|NZ_CP032669|CRISPRCasFinder,CRT,PILER-CR matches to NC_048106 (Synechococcus phage S-CBWM1, complete genome) position: , mismatch: 11, identity: 0.686

aaaccagagccagaaaaagaagttgtgaaagaaga	CRISPR spacer
ctaccagaggcagagaaagaagttgtgaggatgat	Protospacer
  ******* ****.*************... ..

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

93909 : 137912

Listeria_phage(95.16%)

terminase,plate,capsid,tail,holin,integrase,portal

attL 94984:95028|attR 135894:135938

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_046335603.1\|93909_94866_+	2-hydroxyacid dehydrogenase	M1H502	Paramecium_bursaria_Chlorella_virus	1.4e-30	29.3
94984:95028	attL	NA	NA	NA	NA
WP_023546303.1\|95132_96335_-\|integrase	site-specific integrase	A0A0B5CTW8	Listeria_phage	1.5e-221	99.2
WP_077411725.1\|96429_96966_-	hypothetical protein	NA	NA	NA	NA
WP_003737372.1\|97014_97182_-	hypothetical protein	NA	NA	NA	NA
WP_003734808.1\|97339_97816_-	helix-turn-helix transcriptional regulator	A8ASM2	Listeria_phage	1.2e-41	62.7
WP_023546301.1\|97971_98214_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_010990191.1\|98210_98477_+	hypothetical protein	A0A059T7Q1	Listeria_phage	1.2e-40	98.9
WP_003727744.1\|98405_98636_-	hypothetical protein	Q9T185	Listeria_phage	4.6e-36	100.0
WP_003727745.1\|98701_98896_+	hypothetical protein	A0A059T6E5	Listeria_phage	6.3e-26	96.9
WP_003733634.1\|98907_99144_+	hypothetical protein	A0A059T5E9	Listeria_phage	3.3e-37	100.0
WP_061728999.1\|99140_99422_+	hypothetical protein	A0A0B5CTX3	Listeria_phage	1.2e-38	96.8
WP_010990193.1\|99607_99850_-	hypothetical protein	A0A059T7Q3	Listeria_phage	6.8e-38	98.8
WP_061729004.1\|99913_100693_+	antirepressor	A0A0B5CTU1	Listeria_phage	7.6e-139	96.1
WP_061729011.1\|100817_101342_+	hypothetical protein	A0A059T5F0	Listeria_phage	8.3e-89	99.4
WP_003731816.1\|101348_101534_+	helix-turn-helix domain-containing protein	A0A059T674	Listeria_phage	1.1e-27	100.0
WP_061385621.1\|101549_101738_+	hypothetical protein	A0A0B5CU43	Listeria_phage	5.0e-28	96.8
WP_077949712.1\|101969_102929_+	YqaJ viral recombinase family protein	A8ATY5	Listeria_phage	1.8e-177	99.1
WP_012582380.1\|102928_103744_+	recombinase RecT	A0A0B5CTU3	Listeria_phage	5.9e-150	99.3
WP_150978822.1\|103764_104679_+	DnaD domain-containing protein	A0A0B5D175	Listeria_phage	1.6e-140	90.8
WP_003722560.1\|104675_105488_+	DNA adenine methylase	Q8W5X3	Listeria_phage	4.8e-152	95.6
WP_003722559.1\|105484_106081_+	DUF1642 domain-containing protein	Q8W5X2	Listeria_phage	7.5e-54	53.5
WP_003722558.1\|106083_106281_+	hypothetical protein	A0A0B5CU49	Listeria_phage	2.0e-27	95.4
WP_003722557.1\|106277_106721_+	hypothetical protein	A8ASP1	Listeria_phage	2.1e-45	87.1
WP_003722556.1\|106717_107188_+	pentapeptide repeat-containing protein	A0A060AFJ6	Listeria_phage	2.9e-40	89.7
WP_003722555.1\|107184_107646_+	hypothetical protein	D9J0I6	Brochothrix_phage	6.7e-18	35.9
WP_003733878.1\|107642_107822_+	hypothetical protein	A0A076G7F4	Listeria_phage	8.1e-20	87.3
WP_003722552.1\|107818_108301_+	single-stranded DNA-binding protein	A8ATZ7	Listeria_phage	2.0e-81	98.8
WP_009924219.1\|108319_108502_+	hypothetical protein	A8ASP6	Listeria_phage	1.4e-16	77.8
WP_010989958.1\|108446_108851_+	DUF1064 domain-containing protein	A8ASP7	Listeria_phage	1.2e-58	85.8
WP_009924217.1\|108854_109238_+	DUF2481 domain-containing protein	A0A0B5CYS3	Listeria_phage	2.0e-63	97.6
WP_003727776.1\|109366_109531_+	hypothetical protein	A8ASQ0	Listeria_phage	2.5e-20	92.6
WP_003735131.1\|109549_109984_+	hypothetical protein	A8ASQ1	Listeria_phage	4.3e-75	99.3
WP_003734122.1\|110349_110889_+	hypothetical protein	NA	NA	NA	NA
WP_010989957.1\|110934_111729_+\|terminase	terminase	A8ASJ1	Listeria_phage	1.6e-11	70.4
WP_150978823.1\|111697_113029_+\|terminase	PBSX family phage terminase large subunit	Q9T1C1	Listeria_phage	1.3e-258	97.7
WP_009925050.1\|113041_114811_+\|portal	phage portal protein	A8ASJ3	Listeria_phage	5.0e-263	91.0
WP_039381673.1\|114811_115951_+	hypothetical protein	A8ASJ4	Listeria_phage	1.3e-200	96.0
WP_009925047.1\|116029_116599_+	scaffold protein	A0A0B5CTV7	Listeria_phage	1.2e-80	97.9
WP_031645714.1\|116622_117522_+\|capsid	phage major capsid protein	Q9T1B7	Listeria_phage	1.0e-166	99.7
WP_009925045.1\|117521_117680_+	hypothetical protein	A8ASJ7	Listeria_phage	9.6e-17	92.3
WP_009925044.1\|117681_118077_+	hypothetical protein	A0A059T5E3	Listeria_phage	2.2e-54	82.4
WP_150978824.1\|118076_118439_+\|capsid	minor capsid protein	A0A059T658	Listeria_phage	9.5e-60	94.2
WP_029508830.1\|118438_118777_+	hypothetical protein	A0A0B5CTV8	Listeria_phage	5.4e-57	95.5
WP_003737937.1\|118776_119184_+	hypothetical protein	A8ASK1	Listeria_phage	2.0e-66	99.3
WP_009925981.1\|119186_119621_+\|tail	tail protein	Q9T1B1	Listeria_phage	3.0e-76	97.9
WP_003727790.1\|119550_119883_+	hypothetical protein	Q9T1B0	Listeria_phage	1.8e-49	99.1
WP_003727791.1\|119937_120360_+	hypothetical protein	Q9T1A9	Listeria_phage	4.1e-70	100.0
WP_003722531.1\|120365_120971_+	hypothetical protein	Q9T1A8	Listeria_phage	1.3e-109	100.0
WP_150978825.1\|120981_126345_+	tape measure protein	A0A0B5CU25	Listeria_phage	0.0e+00	85.7
WP_061663756.1\|126346_127165_+\|tail	phage tail family protein	Q9T1A6	Listeria_phage	2.0e-153	97.1
WP_150978826.1\|127173_128199_+	hypothetical protein	Q9T1A5	Listeria_phage	3.0e-191	93.5
WP_014931687.1\|128199_129228_+	hypothetical protein	Q9T1A4	Listeria_phage	2.1e-189	98.8
WP_014931686.1\|129227_130301_+\|plate	phage baseplate upper protein	Q9T1A3	Listeria_phage	7.4e-193	96.9
WP_003727798.1\|130312_130630_+	hypothetical protein	Q9T1A2	Listeria_phage	1.3e-49	92.4
WP_003734113.1\|130634_130793_+	hypothetical protein	Q9T1A1	Listeria_phage	3.0e-18	98.1
WP_003722523.1\|130821_131187_+	hypothetical protein	Q9T1A0	Listeria_phage	7.4e-12	100.0
WP_003722522.1\|131199_131481_+\|holin	holin	A8ASL4	Listeria_phage	3.4e-41	94.6
WP_150978827.1\|131480_132326_+	M15 family peptidase	A0A059T7Y8	Listeria_phage	1.7e-136	93.6
WP_010989943.1\|132819_133371_+	hypothetical protein	A8ASL6	Listeria_phage	7.4e-96	95.6
WP_009926666.1\|133447_133945_-	AP2 domain-containing protein	A8ATW6	Listeria_phage	1.8e-88	97.6
WP_031669445.1\|133969_134419_-	anti-CRISPR protein AcrIIA1	A8ATW7	Listeria_phage	6.9e-76	99.3
WP_003722517.1\|134424_134796_-	anti-CRISPR protein AcrIIA2	A0A059T5F6	Listeria_phage	5.3e-58	92.7
WP_009924649.1\|134824_135058_-	hypothetical protein	A8ATW9	Listeria_phage	9.2e-08	48.1
WP_077411716.1\|135357_135591_+	hypothetical protein	A8ATX0	Listeria_phage	7.3e-37	98.7
WP_015987062.1\|135587_135794_+	hypothetical protein	A8ASL9	Listeria_phage	1.8e-31	100.0
WP_014600363.1\|136498_137287_+	hypothetical protein	NA	NA	NA	NA
135894:135938	attR	NA	NA	NA	NA
WP_014600364.1\|137288_137912_+	TIR domain-containing protein	A0A0S2MYG4	Enterococcus_phage	5.5e-15	32.8

DBSCAN-SWA_2

172903 : 179428

Listeria_phage(33.33%)

tail

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_014601579.1\|172903_173356_-	ImmA/IrrE family metallo-endopeptidase	A0A059T7S0	Listeria_phage	5.2e-31	47.9
WP_003721740.1\|173361_173697_-	helix-turn-helix transcriptional regulator	A0A2H4JAR9	uncultured_Caudovirales_phage	4.0e-20	52.5
WP_003732219.1\|173913_174342_+	hypothetical protein	NA	NA	NA	NA
WP_003732220.1\|174353_174770_+	hypothetical protein	A8ASQ1	Listeria_phage	1.3e-20	39.3
WP_046335627.1\|175047_175437_+	DUF5072 domain-containing protein	NA	NA	NA	NA
WP_003721744.1\|175449_175962_+\|tail	phage major tail protein, TP901-1 family	A0A097PBF4	Streptococcus_pyogenes_phage	1.2e-47	62.7
WP_003740132.1\|176009_176312_+	hypothetical protein	NA	NA	NA	NA
WP_009911444.1\|176353_176758_+	hypothetical protein	NA	NA	NA	NA
WP_046335629.1\|176744_178613_+	membrane protein	A0A097PAU2	Streptococcus_pyogenes_phage	3.5e-20	45.8
WP_003721748.1\|178609_179428_+\|tail	phage tail family protein	A0A060AFE1	Staphylococcus_phage	4.2e-39	35.0

DBSCAN-SWA_3

1177456 : 1184879

Hokovirus(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_003721506.1\|1177456_1177840_+	glycerol-3-phosphate cytidylyltransferase	A0A1V0SGE7	Hokovirus	1.4e-16	40.7
WP_014600722.1\|1177861_1178845_+	glycosyltransferase family 2 protein	A0A1V0SAH6	Catovirus	3.1e-12	35.3
WP_046336022.1\|1178859_1179873_+	glycosyltransferase	A0A1V0SAH6	Catovirus	4.6e-11	32.0
WP_003721509.1\|1180081_1181572_+	nicotinate phosphoribosyltransferase	G3MA18	Bacillus_virus	9.5e-114	49.7
WP_003727000.1\|1181583_1182408_+	ammonia-dependent NAD(+) synthetase	G3MA24	Bacillus_virus	9.7e-68	52.6
WP_023549061.1\|1182420_1182729_+	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA
WP_003732712.1\|1182789_1183194_+	PTS sugar transporter subunit IIB	NA	NA	NA	NA
WP_020246560.1\|1183322_1184879_+	glutamine-hydrolyzing GMP synthase	A0A1V0SH76	Hokovirus	2.3e-17	28.1

DBSCAN-SWA_4

1316414 : 1375854

Bacillus_virus(16.67%)

tRNA,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_031671806.1\|1316414_1317554_-\|protease	PrsW family intramembrane metalloprotease	NA	NA	NA	NA
WP_031645072.1\|1317634_1318030_-	helix-turn-helix transcriptional regulator	A9D9J6	Lactobacillus_prophage	1.3e-14	57.4
WP_003727524.1\|1318180_1318396_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_010989719.1\|1318514_1319048_+\|protease	matrixin family metalloprotease	NA	NA	NA	NA
WP_003732795.1\|1319065_1319731_+	hypothetical protein	NA	NA	NA	NA
WP_003732796.1\|1319992_1320931_+	hypothetical protein	NA	NA	NA	NA
WP_003723884.1\|1321045_1322329_+	trigger factor	NA	NA	NA	NA
WP_003723886.1\|1322514_1323774_+\|protease	ATP-dependent protease ATP-binding subunit ClpX	G3M9Z9	Bacillus_virus	1.4e-145	63.2
WP_014601954.1\|1323892_1324459_+	type I signal peptidase SipX	NA	NA	NA	NA
WP_009924619.1\|1324493_1325063_+	type I signal peptidase SipY	NA	NA	NA	NA
WP_003723889.1\|1325164_1325707_+	type I signal peptidase SipZ	NA	NA	NA	NA
WP_003723890.1\|1325716_1326580_+	ribosome biogenesis GTPase YlqF	NA	NA	NA	NA
WP_003723891.1\|1326576_1327362_+	ribonuclease HII	G4YAY0	Emiliania_huxleyi_virus	3.0e-26	39.2
WP_003723892.1\|1327495_1328356_+	DNA-protecting protein DprA	NA	NA	NA	NA
WP_003732799.1\|1328627_1330706_+	type I DNA topoisomerase	A0A1V0SB35	Catovirus	3.2e-107	37.5
WP_003723999.1\|1330768_1332073_+\|tRNA	FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO	NA	NA	NA	NA
WP_009911635.1\|1332355_1333258_+	tyrosine recombinase XerC	A0A097EYL9	Mycobacterium_phage	1.2e-13	28.6
WP_003724001.1\|1333278_1333818_+\|protease	ATP-dependent protease subunit HslV	NA	NA	NA	NA
WP_031645070.1\|1333831_1335241_+\|protease	ATP-dependent protease ATPase subunit HslU	W6AS21	Erwinia_phage	1.7e-43	27.8
WP_003726695.1\|1335261_1336041_+	GTP-sensing pleiotropic transcriptional regulator CodY	NA	NA	NA	NA
WP_003732801.1\|1336017_1336212_-	hypothetical protein	NA	NA	NA	NA
WP_003724129.1\|1336143_1336563_+	acyl-CoA thioesterase	NA	NA	NA	NA
WP_003724130.1\|1336584_1336896_+	hypothetical protein	NA	NA	NA	NA
WP_009932949.1\|1336898_1337771_+	aldose 1-epimerase family protein	NA	NA	NA	NA
WP_003724132.1\|1337812_1338409_-	glycerol-3-phosphate 1-O-acyltransferase PlsY	NA	NA	NA	NA
WP_003732802.1\|1338566_1338974_+	CoA-binding protein	NA	NA	NA	NA
WP_003723731.1\|1339154_1341122_+	DNA topoisomerase IV subunit B	G3M9Z3	Bacillus_virus	6.7e-123	42.5
WP_010989723.1\|1341118_1343578_+	DNA topoisomerase IV subunit A	G3M9Z5	Bacillus_virus	4.7e-102	31.6
WP_009913867.1\|1343660_1344128_+	S-ribosylhomocysteine lyase	NA	NA	NA	NA
WP_012951574.1\|1344454_1346188_+	LapB repeat-containing protein	NA	NA	NA	NA
WP_012951575.1\|1346519_1348316_+	class 1 internalin InlK	NA	NA	NA	NA
WP_012951576.1\|1348349_1350218_-	acetyltransferase	B5WZU0	Pseudomonas_phage	6.5e-43	31.9
WP_009925395.1\|1350430_1351129_+	glycerophosphodiester phosphodiesterase	A0A0S2MYI4	Enterococcus_phage	9.9e-13	32.4
WP_046335985.1\|1351361_1353038_+	glycerol-3-phosphate dehydrogenase/oxidase	NA	NA	NA	NA
WP_012951578.1\|1353163_1354081_+\|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	NA	NA	NA	NA
WP_003719566.1\|1354203_1354437_+	RNA chaperone Hfq	NA	NA	NA	NA
WP_022741839.1\|1354547_1355771_+	GTPase HflX	NA	NA	NA	NA
WP_010989728.1\|1355763_1356990_+	methionine gamma-lyase family protein	NA	NA	NA	NA
WP_003719570.1\|1357193_1357562_+	MerR family transcriptional regulator	NA	NA	NA	NA
WP_003723435.1\|1357632_1358967_+	type I glutamate--ammonia ligase	A0A1V0SJ53	Klosneuvirus	2.0e-06	26.4
WP_003723436.1\|1359110_1360406_+	arsenical efflux pump membrane protein ArsB	A0A2H4PQU3	Staphylococcus_phage	1.8e-145	61.6
WP_003723437.1\|1360449_1360971_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_003723438.1\|1361000_1361615_-	transcriptional repressor LexA	A0A1B2APZ1	Phage_Wrath	9.3e-15	62.1
WP_003723439.1\|1361771_1362101_+	cell division suppressor protein YneA	NA	NA	NA	NA
WP_014601966.1\|1362192_1362420_+	DUF896 domain-containing protein	NA	NA	NA	NA
WP_031645059.1\|1362566_1364561_+	transketolase	NA	NA	NA	NA
WP_003723442.1\|1364781_1365021_+	YneF family protein	NA	NA	NA	NA
WP_010989731.1\|1365071_1365914_-	DUF2785 domain-containing protein	NA	NA	NA	NA
WP_046335982.1\|1365932_1366664_-	class I SAM-dependent methyltransferase	A0A1X9I6N4	Streptococcus_phage	3.4e-80	58.7
WP_003723445.1\|1366685_1367192_-	ParB-like nuclease domain-containing protein	A0A220GKT8	Streptococcus_phage	4.0e-56	66.7
WP_003723446.1\|1367201_1368506_-	DUF3440 domain-containing protein	A0A220GKF8	Streptococcus_phage	9.5e-134	52.1
WP_072217143.1\|1368495_1369701_-	helicase SNF2	L0P6E9	Lactobacillus_phage	3.7e-92	47.1
WP_003723448.1\|1369678_1370053_-	hypothetical protein	NA	NA	NA	NA
WP_003723449.1\|1370345_1371074_+	UMP kinase	NA	NA	NA	NA
WP_003723450.1\|1371073_1371631_+	ribosome recycling factor	NA	NA	NA	NA
WP_003732812.1\|1371860_1372619_+	isoprenyl transferase	R9W0U9	Flavobacterium_phage	4.4e-22	42.1
WP_003732813.1\|1372632_1373421_+	phosphatidate cytidylyltransferase	NA	NA	NA	NA
WP_010989733.1\|1373435_1374578_+	1-deoxy-D-xylulose-5-phosphate reductoisomerase	NA	NA	NA	NA
WP_003723454.1\|1374591_1375854_+\|protease	RIP metalloprotease RseP	NA	NA	NA	NA

DBSCAN-SWA_5

1870062 : 1878348

Synechococcus_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_003722243.1\|1870062_1870629_-	phosphoribosylglycinamide formyltransferase	M4QRX9	Synechococcus_phage	7.0e-25	35.9
WP_009933235.1\|1870625_1871675_-	phosphoribosylformylglycinamidine cyclo-ligase	Q58MH8	Prochlorococcus_phage	1.0e-61	43.2
WP_010989807.1\|1871693_1873121_-	amidophosphoribosyltransferase	A0A1B1ISH6	uncultured_Mediterranean_phage	8.1e-54	31.9
WP_046335569.1\|1873105_1875325_-	phosphoribosylformylglycinamidine synthase subunit PurL	A6N228	Microbacterium_phage	1.5e-160	41.2
WP_003733240.1\|1875317_1876001_-	phosphoribosylformylglycinamidine synthase subunit PurQ	NA	NA	NA	NA
WP_015454911.1\|1876004_1876250_-	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA
WP_010989809.1\|1876261_1876975_-	phosphoribosylaminoimidazolesuccinocarboxamide synthase	A0A0E3F9V5	Synechococcus_phage	2.3e-41	38.3
WP_003733238.1\|1877055_1878348_-	adenylosuccinate lyase	A0A1B3B081	Gordonia_phage	7.2e-17	32.6

DBSCAN-SWA_6

2541091 : 2548935

Streptococcus_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_003722604.1\|2541091_2542063_-	DNA-binding protein WhiA	Q7AWZ3	Streptococcus_phage	5.2e-52	39.4
WP_046336559.1\|2542070_2543039_-	YvcK family protein	A1IMD5	Streptococcus_phage	1.1e-67	43.3
WP_010990001.1\|2543040_2543916_-	RNase adapter RapZ	A0A0R8VB27	Thermobifida_phage	3.2e-08	29.7
WP_150978855.1\|2544023_2545754_-	phospho-sugar mutase	A0A1X9I671	Streptococcus_phage	2.1e-173	53.1
WP_077286972.1\|2545795_2546857_-	galactose mutarotase	NA	NA	NA	NA
WP_009924988.1\|2546873_2547857_-	UDP-glucose 4-epimerase GalE	A0A2K9L1R4	Tupanvirus	2.6e-51	37.2
WP_003722610.1\|2547975_2548935_-	thioredoxin-disulfide reductase	G3MA85	Bacillus_virus	2.0e-88	53.7

DBSCAN-SWA_7

2827782 : 2837814

Tupanvirus(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_026750054.1\|2827782_2829936_-	DNA topoisomerase III	A0A1X9I6W8	Streptococcus_phage	1.3e-42	34.1
WP_003732117.1\|2829959_2831732_-	DNA helicase RecQ	A0A2K9L3P7	Tupanvirus	6.3e-80	37.1
WP_003722118.1\|2831892_2833359_-	IMP dehydrogenase	A0A1V0SHK8	Klosneuvirus	8.0e-97	40.0
WP_003739952.1\|2833382_2833517_+	hypothetical protein	NA	NA	NA	NA
WP_026750053.1\|2833646_2834177_-	ADP-ribose-binding protein	A0A140G0J9	Infectious_spleen_and_kidney_necrosis_virus	2.2e-28	44.4
WP_046335726.1\|2834234_2835845_-	ABC-F family ATP-binding cassette domain-containing protein	A0A2K9L3Z8	Tupanvirus	1.3e-47	29.7
WP_072215787.1\|2836023_2836332_+	hypothetical protein	NA	NA	NA	NA
WP_009924391.1\|2836359_2837814_+	glycoside hydrolase family 1 protein	A0A0B5JD41	Pandoravirus	1.9e-50	30.3

Anti-CRISPR protein detection

Acr_ID: NZ_CP032669.1|WP_010990191.1|98210_98477_+|hypothetical-protein

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Acr_ID: NZ_CP032669.1|WP_003727744.1|98405_98636_-|hypothetical-protein

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Acr_ID: NZ_CP032669.1|WP_077411725.1|96429_96966_-|hypothetical-protein

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Acr_ID: NZ_CP032669.1|WP_003737372.1|97014_97182_-|hypothetical-protein

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Acr_ID: NZ_CP032669.1|WP_010990193.1|99607_99850_-|hypothetical-protein

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Acr_ID: NZ_CP032669.1|WP_061729011.1|100817_101342_+|hypothetical-protein

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Acr ID

Acr position

Acr size

Homology with known anti

Neighbor HTH/AcRanker

Neighbor Aca

In prophage

Protospacer in prophage

NZ_CP032669.1|WP_010990191.1|98210_98477_+|hypothetical-protein

98210_98477_+

88 aa aa

93909-137912

yes

CRISPR ID	CRISPR type	Spacer info	Spacer location	Spacer length	Protospacer location	Mismatch
NZ_CP032669_2	Unclear	2.5\|585694\|36\|NZ_CP032669\|PILER-CR,CRISPRCasFinder,CRT	585694-585729	36	132213-132248	1

1. spacer 2.5|585694|36|NZ_CP032669|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP032669 position: 132213-132248, mismatch: 1

ggcacagtcttcacgatttcggggatggggaaaact	CRISPR spacer
ggcacagtcttcacgatttcagggatggggaaaact	Protospacer
********************.***************

NZ_CP032669.1|WP_003727744.1|98405_98636_-|hypothetical-protein

98405_98636_-

76 aa aa

93909-137912

yes

CRISPR ID	CRISPR type	Spacer info	Spacer location	Spacer length	Protospacer location	Mismatch
NZ_CP032669_2	Unclear	2.5\|585694\|36\|NZ_CP032669\|PILER-CR,CRISPRCasFinder,CRT	585694-585729	36	132213-132248	1

1. spacer 2.5|585694|36|NZ_CP032669|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP032669 position: 132213-132248, mismatch: 1

ggcacagtcttcacgatttcggggatggggaaaact	CRISPR spacer
ggcacagtcttcacgatttcagggatggggaaaact	Protospacer
********************.***************

NZ_CP032669.1|WP_077411725.1|96429_96966_-|hypothetical-protein

96429_96966_-

178 aa aa

93909-137912

yes

CRISPR ID	CRISPR type	Spacer info	Spacer location	Spacer length	Protospacer location	Mismatch
NZ_CP032669_2	Unclear	2.5\|585694\|36\|NZ_CP032669\|PILER-CR,CRISPRCasFinder,CRT	585694-585729	36	132213-132248	1

1. spacer 2.5|585694|36|NZ_CP032669|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP032669 position: 132213-132248, mismatch: 1

ggcacagtcttcacgatttcggggatggggaaaact	CRISPR spacer
ggcacagtcttcacgatttcagggatggggaaaact	Protospacer
********************.***************

NZ_CP032669.1|WP_003737372.1|97014_97182_-|hypothetical-protein

97014_97182_-

55 aa aa

93909-137912

yes

CRISPR ID	CRISPR type	Spacer info	Spacer location	Spacer length	Protospacer location	Mismatch
NZ_CP032669_2	Unclear	2.5\|585694\|36\|NZ_CP032669\|PILER-CR,CRISPRCasFinder,CRT	585694-585729	36	132213-132248	1

1. spacer 2.5|585694|36|NZ_CP032669|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP032669 position: 132213-132248, mismatch: 1

ggcacagtcttcacgatttcggggatggggaaaact	CRISPR spacer
ggcacagtcttcacgatttcagggatggggaaaact	Protospacer
********************.***************

NZ_CP032669.1|WP_010990193.1|99607_99850_-|hypothetical-protein

99607_99850_-

80 aa aa

93909-137912

yes

CRISPR ID	CRISPR type	Spacer info	Spacer location	Spacer length	Protospacer location	Mismatch
NZ_CP032669_2	Unclear	2.5\|585694\|36\|NZ_CP032669\|PILER-CR,CRISPRCasFinder,CRT	585694-585729	36	132213-132248	1

1. spacer 2.5|585694|36|NZ_CP032669|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP032669 position: 132213-132248, mismatch: 1

ggcacagtcttcacgatttcggggatggggaaaact	CRISPR spacer
ggcacagtcttcacgatttcagggatggggaaaact	Protospacer
********************.***************

NZ_CP032669.1|WP_061729011.1|100817_101342_+|hypothetical-protein

100817_101342_+

174 aa aa

93909-137912

yes

CRISPR ID	CRISPR type	Spacer info	Spacer location	Spacer length	Protospacer location	Mismatch
NZ_CP032669_2	Unclear	2.5\|585694\|36\|NZ_CP032669\|PILER-CR,CRISPRCasFinder,CRT	585694-585729	36	132213-132248	1

1. spacer 2.5|585694|36|NZ_CP032669|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP032669 position: 132213-132248, mismatch: 1

ggcacagtcttcacgatttcggggatggggaaaact	CRISPR spacer
ggcacagtcttcacgatttcagggatggggaaaact	Protospacer
********************.***************

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP032669

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CRISPR-Cas detection and classification

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

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Click the colored protein region to show detailed information