CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP038019	Eikenella exigua strain PXX plasmid unnamed1, complete sequence	0 crisprs	NA	0	0	0	0
NZ_CP038018	Eikenella exigua strain PXX chromosome, complete genome	0 crisprs	DinG,cas3,DEDDh	0	0	9	0

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

78362 : 87488

Enterobacteria_phage(22.22%)

integrase

attL 74412:74429|attR 92664:92681

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
74412:74429	attL	NA	NA	NA	NA
WP_151085892.1\|78362_79580_+\|integrase	tyrosine-type recombinase/integrase	Q7M297	Enterobacteria_phage	2.4e-70	39.7
WP_067442183.1\|79881_80082_-	hypothetical protein	NA	NA	NA	NA
WP_082886566.1\|80101_80275_+	DUF1508 domain-containing protein	A0A2P1N580	Mycobacterium_phage	9.3e-05	51.2
WP_156496454.1\|80402_80576_+	hypothetical protein	NA	NA	NA	NA
WP_067442185.1\|80597_80909_-	hypothetical protein	NA	NA	NA	NA
WP_082886568.1\|80942_81170_-	hypothetical protein	NA	NA	NA	NA
WP_151085895.1\|81236_81407_-	helix-turn-helix domain-containing protein	A0A2H4JCB6	uncultured_Caudovirales_phage	6.3e-06	56.2
WP_067442187.1\|81514_82216_+	helix-turn-helix transcriptional regulator	K7P7I4	Enterobacteria_phage	2.9e-36	38.7
WP_151085897.1\|83468_83801_+	DUF4325 domain-containing protein	NA	NA	NA	NA
WP_067442194.1\|83876_84167_-	putative addiction module antidote protein	A0A141GEX5	Brucella_phage	4.1e-13	40.7
WP_067442200.1\|84214_84562_-	type II toxin-antitoxin system HicB family antitoxin	K7PJX6	Enterobacterial_phage	4.1e-20	44.0
WP_067442196.1\|84554_84812_-	type II toxin-antitoxin system HicA family toxin	K7PH44	Enterobacterial_phage	1.1e-12	46.2
WP_067442198.1\|85231_85543_+	hypothetical protein	NA	NA	NA	NA
WP_067528328.1\|86507_87008_+	TIGR02594 family protein	A0A1L2C8R8	Pseudomonas_phage	3.5e-52	56.5
WP_067443937.1\|87047_87488_-	transcriptional regulator	J9Q7G7	Salmonella_phage	4.3e-22	42.8
92664:92681	attR	NA	NA	NA	NA

DBSCAN-SWA_2

161112 : 245454

102

Burkholderia_phage(23.81%)

terminase,tRNA,integrase,protease,tail,capsid,plate,transposase

attL 215171:215196|attR 238059:238084

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_067442825.1\|161112_161598_+\|tRNA	aminoacyl-tRNA deacylase	NA	NA	NA	NA
WP_067442784.1\|161810_165272_+	transcription-repair coupling factor	NA	NA	NA	NA
WP_067442785.1\|165337_166105_+	HNH endonuclease	NA	NA	NA	NA
WP_067442787.1\|166333_167476_+	DUF1294 domain-containing protein	NA	NA	NA	NA
WP_067442789.1\|167480_168032_+	DNA-3-methyladenine glycosylase I	NA	NA	NA	NA
WP_067444130.1\|168281_169010_-	TIGR02117 family protein	NA	NA	NA	NA
WP_067444132.1\|169079_170042_-\|tRNA	tRNA-dihydrouridine synthase	NA	NA	NA	NA
WP_151085919.1\|170178_170520_-	hypothetical protein	NA	NA	NA	NA
WP_067444134.1\|170662_171439_-	acyl-ACP--UDP-N-acetylglucosamine O-acyltransferase	NA	NA	NA	NA
WP_023887998.1\|171556_172021_-	3-hydroxyacyl-ACP dehydratase FabZ	NA	NA	NA	NA
WP_067444136.1\|172024_173056_-	UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase	NA	NA	NA	NA
WP_067442803.1\|173129_173633_-	OmpH family outer membrane protein	NA	NA	NA	NA
WP_067444138.1\|173642_176039_-	outer membrane protein assembly factor BamA	NA	NA	NA	NA
WP_067442826.1\|176042_177386_-\|protease	RIP metalloprotease RseP	NA	NA	NA	NA
WP_067442808.1\|177659_178844_-	1-deoxy-D-xylulose-5-phosphate reductoisomerase	NA	NA	NA	NA
WP_067442809.1\|179151_179796_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_167508191.1\|179964_180990_-	UDP-N-acetylmuramate dehydrogenase	NA	NA	NA	NA
WP_067442812.1\|180982_182371_-	MATE family efflux transporter	NA	NA	NA	NA
WP_151085925.1\|182360_182783_-	hypothetical protein	NA	NA	NA	NA
WP_067442814.1\|182828_183485_-	OmpA family protein	G3M9Z0	Bacillus_virus	2.0e-07	35.0
WP_067444142.1\|183715_184222_+	hypothetical protein	NA	NA	NA	NA
WP_151085928.1\|184290_185745_+\|tRNA	cysteine--tRNA ligase	M1PG92	Moumouvirus	5.7e-47	34.1
WP_151085930.1\|185959_186601_+	DUF4189 domain-containing protein	NA	NA	NA	NA
WP_151085932.1\|186841_187777_-	bifunctional riboflavin kinase/FAD synthetase	NA	NA	NA	NA
WP_067444150.1\|187949_188171_-	hypothetical protein	NA	NA	NA	NA
WP_067440321.1\|188171_188477_-	hypothetical protein	NA	NA	NA	NA
WP_067444152.1\|188550_188868_-	hypothetical protein	NA	NA	NA	NA
WP_067444154.1\|189073_191281_-	primosomal protein N'	NA	NA	NA	NA
WP_067440331.1\|191560_192073_+	O-acetyl-ADP-ribose deacetylase	F1SVT2	Red_sea_bream_iridovirus	2.7e-36	53.4
WP_151085934.1\|192098_192356_+	hypothetical protein	NA	NA	NA	NA
WP_082880675.1\|192372_192894_+	translation initiation factor IF-3	A0A2L0UZ54	Agrobacterium_phage	1.3e-09	31.5
WP_067440333.1\|193044_193242_+	50S ribosomal protein L35	NA	NA	NA	NA
WP_023888029.1\|193255_193612_+	50S ribosomal protein L20	NA	NA	NA	NA
WP_067440335.1\|194536_194959_-	hypothetical protein	NA	NA	NA	NA
WP_067440339.1\|195087_195312_-	hypothetical protein	NA	NA	NA	NA
WP_067444156.1\|195311_196697_-	TRAP transporter large permease subunit	NA	NA	NA	NA
WP_067440344.1\|197113_197656_-	5'-3'-deoxyribonucleotidase	A0A2R8FEB6	Brazilian_cedratvirus	4.8e-07	36.7
WP_067440349.1\|197847_198654_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_067440352.1\|199059_200181_+	NADH-dependent flavin oxidoreductase	NA	NA	NA	NA
WP_067440353.1\|200269_201100_-	ABC transporter ATP-binding protein	F2Y302	Organic_Lake_phycodnavirus	1.5e-15	29.9
WP_067440357.1\|201103_202078_-	serine hydrolase	A0A0Y0A2S9	Mycobacterium_phage	2.5e-14	32.1
WP_067440359.1\|202237_203128_-	SDR family oxidoreductase	NA	NA	NA	NA
WP_067444158.1\|203234_204752_-	ABC transporter permease/substrate-binding protein	NA	NA	NA	NA
WP_067440366.1\|204949_205351_-	hypothetical protein	NA	NA	NA	NA
WP_067440367.1\|205996_207154_-	DUF1176 domain-containing protein	NA	NA	NA	NA
WP_067440370.1\|207305_207878_-\|tRNA	aminoacyl-tRNA hydrolase	NA	NA	NA	NA
WP_067440373.1\|208011_208779_-	TSUP family transporter	NA	NA	NA	NA
WP_151085936.1\|209268_210081_-	DNA adenine methylase	A0A2H4J8Q1	uncultured_Caudovirales_phage	3.3e-60	47.2
WP_151085938.1\|210049_210232_-	Com family DNA-binding transcriptional regulator	NA	NA	NA	NA
WP_151085941.1\|210398_210884_-	hypothetical protein	F6MIM0	Haemophilus_phage	1.5e-31	45.9
WP_151085943.1\|210880_211516_-	DUF4376 domain-containing protein	A0A0R6PGN1	Moraxella_phage	4.9e-35	58.5
WP_167508192.1\|211529_212246_-	hypothetical protein	NA	NA	NA	NA
WP_023887382.1\|213037_213616_-\|tail	phage tail protein	Q6QI98	Burkholderia_phage	4.7e-53	54.9
WP_151085948.1\|213619_214762_-\|plate	baseplate J/gp47 family protein	A4JWL6	Burkholderia_virus	1.5e-63	42.4
WP_067446614.1\|214764_215142_-\|plate	phage baseplate protein	NA	NA	NA	NA
215171:215196	attL	NA	NA	NA	NA
WP_067446616.1\|215270_215882_-\|plate	phage baseplate assembly protein V	F1BUP5	Erwinia_phage	1.2e-09	31.2
WP_082880667.1\|215868_217005_-	hypothetical protein	A4JWL3	Burkholderia_virus	2.9e-70	44.1
WP_067446619.1\|216997_217246_-	hypothetical protein	NA	NA	NA	NA
WP_151085950.1\|217242_218142_-\|tail	phage tail protein	Q6QIA4	Burkholderia_phage	7.2e-24	41.1
WP_067446624.1\|218122_220666_-\|tail	phage tail tape measure protein	A0A1B2LRQ0	Wolbachia_phage	1.3e-75	39.9
WP_064104199.1\|221031_221319_-\|tail	phage tail assembly protein	Q6QIA8	Burkholderia_phage	2.2e-06	42.5
WP_067446626.1\|221460_221976_-\|tail	phage major tail tube protein	A4JWK6	Burkholderia_virus	3.1e-40	51.5
WP_067446628.1\|221990_223388_-\|tail	phage tail protein	A4JWK5	Burkholderia_virus	2.6e-97	43.4
WP_067446630.1\|223397_223895_-	hypothetical protein	NA	NA	NA	NA
WP_023888047.1\|223894_224335_-	DUF1320 domain-containing protein	A0A1B0T6F3	Thiobacimonas_phage	7.1e-09	34.9
WP_067446632.1\|224338_224704_-	hypothetical protein	NA	NA	NA	NA
WP_067446634.1\|224706_225048_-	DUF2190 family protein	NA	NA	NA	NA
WP_064087602.1\|225099_226035_-	hypothetical protein	A4JWK0	Burkholderia_virus	1.7e-52	42.8
WP_151085953.1\|226068_227172_-	2-oxoacid:acceptor oxidoreductase	Q6QIB7	Burkholderia_phage	1.4e-66	43.4
WP_023888052.1\|227373_227745_-	hypothetical protein	Q6QIE8	Burkholderia_phage	2.6e-20	47.6
WP_067446638.1\|227741_228218_-	regulatory protein GemA	Q6QIE7	Burkholderia_phage	6.7e-21	44.4
WP_067446640.1\|228275_228551_-	HU family DNA-binding protein	A4JWM7	Burkholderia_virus	5.4e-15	51.1
WP_151085957.1\|228599_228797_-	hypothetical protein	NA	NA	NA	NA
WP_151085960.1\|228801_229689_-	recombination-associated protein RdgC	L7TP07	Pseudomonas_virus	3.3e-45	37.5
WP_064087596.1\|229691_230318_-	DUF3164 family protein	A0A0M3LQ92	Mannheimia_phage	4.8e-51	48.7
WP_064087595.1\|230289_230706_-	hypothetical protein	NA	NA	NA	NA
WP_064087594.1\|230715_231222_-	hypothetical protein	A0A2H4JFV8	uncultured_Caudovirales_phage	4.2e-29	45.5
WP_156502918.1\|231218_231368_-	hypothetical protein	NA	NA	NA	NA
WP_067446648.1\|231646_231922_-	hypothetical protein	NA	NA	NA	NA
WP_023888069.1\|231927_232071_-	hypothetical protein	NA	NA	NA	NA
WP_151085963.1\|232072_233212_-	AAA family ATPase	A4JWN1	Burkholderia_virus	1.1e-96	48.2
WP_064087623.1\|233213_234980_-\|integrase,transposase	DDE-type integrase/transposase/recombinase	Q6QIE0	Burkholderia_phage	1.0e-143	46.8
WP_067446652.1\|234995_235841_-	hypothetical protein	A4JWN3	Burkholderia_virus	2.9e-43	40.9
WP_064104182.1\|235875_236163_-	winged helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_064104181.1\|236174_236366_-	DNA-binding protein	A0A0S4L0D0	Pseudomonas_phage	3.0e-12	56.7
WP_064104180.1\|236474_236855_+	helix-turn-helix transcriptional regulator	Q6QID2	Burkholderia_phage	2.9e-19	43.1
WP_151085967.1\|236873_237428_+	hypothetical protein	NA	NA	NA	NA
WP_081253947.1\|237448_238039_+	hypothetical protein	NA	NA	NA	NA
WP_151085969.1\|238139_238670_+	N-acetylmuramoyl-L-alanine amidase	E5EYD9	Acinetobacter_phage	7.2e-40	49.7
238059:238084	attR	NA	NA	NA	NA
WP_151085971.1\|238666_238846_+	hypothetical protein	NA	NA	NA	NA
WP_151085973.1\|238842_239109_+	hypothetical protein	NA	NA	NA	NA
WP_151085976.1\|239113_239488_+	hypothetical protein	NA	NA	NA	NA
WP_081251814.1\|239492_239675_+	hypothetical protein	NA	NA	NA	NA
WP_064087581.1\|239653_239884_+	hypothetical protein	A0A0M3LS11	Mannheimia_phage	7.0e-08	51.6
WP_064104242.1\|239886_240210_+	hypothetical protein	Q6QIC4	Burkholderia_phage	1.2e-10	43.3
WP_009425424.1\|240206_240512_+	hypothetical protein	Q5ZQY7	Pseudomonas_phage	2.5e-29	60.4
WP_151085978.1\|240514_241066_+	DUF3486 family protein	Q6QIC2	Burkholderia_phage	1.3e-31	40.9
WP_151085980.1\|241062_242364_+\|terminase	terminase	A0A2P9JZI8	Alteromonadaceae_phage	7.4e-155	63.2
WP_151085982.1\|242365_243859_+	DUF935 family protein	A4JWJ5	Burkholderia_virus	1.2e-121	49.3
WP_151085984.1\|243855_244761_+\|capsid	minor capsid protein	A0A0M4UTA3	Ralstonia_phage	2.7e-63	48.9
WP_151085987.1\|244766_244976_+	hypothetical protein	NA	NA	NA	NA
WP_126983221.1\|244968_245454_+	phage virion morphogenesis protein	L7P7T2	Pseudomonas_phage	7.1e-18	39.9

DBSCAN-SWA_3

687240 : 725135

Haemophilus_phage(18.75%)

terminase,integrase,head,tail,capsid,plate,transposase

attL 682591:682610|attR 726572:726591

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
682591:682610	attL	NA	NA	NA	NA
WP_067439422.1\|687240_687858_-	dTMP kinase	A0A1L2BX49	Bacteriophage	6.2e-27	45.6
WP_151086130.1\|687979_688372_-	hypothetical protein	NA	NA	NA	NA
WP_151086132.1\|688564_689392_-	hypothetical protein	F6MIM2	Haemophilus_phage	6.5e-80	49.6
WP_082881522.1\|689348_689552_-	Com family DNA-binding transcriptional regulator	NA	NA	NA	NA
WP_067527973.1\|689709_690186_-	cytoplasmic protein	A0A0R6PFI9	Moraxella_phage	3.0e-29	50.0
WP_151086134.1\|690188_690818_-	DUF4376 domain-containing protein	A0A0R6PGN1	Moraxella_phage	1.2e-33	56.8
WP_067529768.1\|692257_692821_-	DUF2313 domain-containing protein	F6MIL7	Haemophilus_phage	1.4e-28	37.8
WP_151086136.1\|692817_693873_-\|plate	baseplate J/gp47 family protein	A0A0M3LQN4	Mannheimia_phage	5.4e-71	42.8
WP_151086138.1\|693869_694223_-	hypothetical protein	A0A2H4JDR8	uncultured_Caudovirales_phage	4.1e-23	54.7
WP_151086141.1\|694269_694899_-\|plate	phage baseplate assembly protein V	A0A0M3LPA3	Mannheimia_phage	2.1e-46	45.8
WP_067527328.1\|694916_696044_-\|tail	phage tail protein	A0A2H4J9E6	uncultured_Caudovirales_phage	3.7e-78	41.9
WP_151086143.1\|696027_697392_-	hypothetical protein	A0A2H4JGT4	uncultured_Caudovirales_phage	9.5e-44	32.3
WP_082881531.1\|697395_697707_-	hypothetical protein	NA	NA	NA	NA
WP_151086145.1\|699515_699734_-	hypothetical protein	NA	NA	NA	NA
WP_151086147.1\|699739_700132_-	hypothetical protein	NA	NA	NA	NA
WP_151086149.1\|700232_700871_-	hypothetical protein	NA	NA	NA	NA
WP_049249282.1\|700884_701259_-\|tail	phage tail protein	A0A0M3LRV6	Mannheimia_phage	4.2e-26	51.6
WP_151086152.1\|701270_702695_-\|tail	phage tail protein	B7SDP8	Haemophilus_phage	3.0e-93	45.9
WP_064105057.1\|702694_702892_-	DUF2635 domain-containing protein	NA	NA	NA	NA
WP_151086154.1\|703013_703565_-	DUF1834 family protein	B7SDP5	Haemophilus_phage	8.0e-26	41.8
WP_064105087.1\|703548_703968_-	DUF1320 family protein	G8GWF0	Rhodobacter_phage	2.0e-13	39.4
WP_151086157.1\|703967_704447_-	hypothetical protein	NA	NA	NA	NA
WP_064089153.1\|704500_705415_-\|head	head protein	A0A0A1IWZ9	Pseudomonas_phage	3.8e-105	59.9
WP_151086159.1\|705427_706558_-	hypothetical protein	A0A2D1GNS3	Pseudomonas_phage	1.1e-56	40.4
WP_064089155.1\|706770_707346_-	phage virion morphogenesis protein	B7SDN8	Haemophilus_phage	1.8e-15	35.7
WP_151086161.1\|707448_708786_-\|capsid	minor capsid protein	A4JWJ6	Burkholderia_virus	2.5e-44	40.9
WP_151086163.1\|708775_710365_-	DUF935 family protein	A0A0M3LRU4	Mannheimia_phage	2.6e-125	46.7
WP_167508166.1\|710450_712079_-\|terminase	phage terminase large subunit	B7SDN0	Haemophilus_phage	5.2e-198	64.4
WP_151086166.1\|712091_712592_+	hypothetical protein	J7HXA3	Pseudomonas_phage	4.3e-10	30.1
WP_167508167.1\|712604_712796_+	hypothetical protein	NA	NA	NA	NA
WP_151086170.1\|712792_713293_-	DUF1804 family protein	I6PBD1	Pseudomonas_phage	2.2e-46	56.6
WP_151086172.1\|713309_713543_-	hypothetical protein	NA	NA	NA	NA
WP_167508168.1\|713539_713821_-	hypothetical protein	NA	NA	NA	NA
WP_151086177.1\|713810_714170_-	hypothetical protein	NA	NA	NA	NA
WP_167508169.1\|714162_714363_-	hypothetical protein	NA	NA	NA	NA
WP_151086179.1\|714364_714799_-	hypothetical protein	NA	NA	NA	NA
WP_167508194.1\|714773_715109_-	hypothetical protein	NA	NA	NA	NA
WP_151086182.1\|715215_715746_-	N-acetylmuramoyl-L-alanine amidase	E5EYD9	Acinetobacter_phage	1.5e-37	50.6
WP_067525833.1\|715824_716295_-	hypothetical protein	NA	NA	NA	NA
WP_151086186.1\|716284_716701_-	DUF1018 domain-containing protein	A0A0M5MRZ7	Ralstonia_phage	3.7e-23	45.5
WP_151086188.1\|716765_717041_-	HU family DNA-binding protein	B5TA87	Burkholderia_phage	6.6e-13	45.6
WP_151086190.1\|717117_717318_-	hypothetical protein	NA	NA	NA	NA
WP_151086193.1\|717322_718207_-	recombination-associated protein RdgC	L7TP07	Pseudomonas_virus	2.2e-41	39.3
WP_151086195.1\|718196_718511_-	hypothetical protein	K7ZPX9	Xanthomonas_citri_phage	8.4e-12	41.8
WP_151086198.1\|718523_718757_-	hypothetical protein	NA	NA	NA	NA
WP_064105034.1\|718758_719298_-	host-nuclease inhibitor protein Gam	A0A0C4UQY5	Shigella_phage	9.0e-30	47.8
WP_151086200.1\|719291_719681_-	hypothetical protein	NA	NA	NA	NA
WP_151086203.1\|719646_720177_-	hypothetical protein	A0A2H4JFV8	uncultured_Caudovirales_phage	6.8e-30	52.5
WP_151086205.1\|720173_720491_-	hypothetical protein	NA	NA	NA	NA
WP_151086208.1\|720493_720721_-	hypothetical protein	NA	NA	NA	NA
WP_151086211.1\|720880_721174_-	hypothetical protein	NA	NA	NA	NA
WP_153716906.1\|721173_721326_-	hypothetical protein	NA	NA	NA	NA
WP_081258778.1\|721344_722205_-	AAA family ATPase	A0A2D1GNS0	Pseudomonas_phage	1.5e-66	47.2
WP_167508170.1\|722300_724319_-\|integrase,transposase	DDE-type integrase/transposase/recombinase	A0A2D1GNK9	Pseudomonas_phage	6.2e-132	40.4
WP_067527395.1\|724311_724791_-	hypothetical protein	NA	NA	NA	NA
WP_067527397.1\|724856_725135_-	DNA-binding protein	A0A0C4UQU0	Shigella_phage	1.8e-13	55.6
726572:726591	attR	NA	NA	NA	NA

DBSCAN-SWA_4

856979 : 867555

uncultured_Mediterranean_phage(28.57%)

protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_067439099.1\|856979_857951_-	D-glycero-beta-D-manno-heptose-7-phosphate kinase	R9S8D5	Prochlorococcus_phage	1.7e-15	26.3
WP_067439096.1\|858071_858767_-	aspartate/glutamate racemase family protein	NA	NA	NA	NA
WP_067439093.1\|858905_859982_-	peptide chain release factor 1	A0A0S4KWG0	Pseudomonas_phage	4.8e-06	36.2
WP_151086240.1\|860074_860554_-	hypothetical protein	NA	NA	NA	NA
WP_067439090.1\|860555_862499_-	ATP-binding cassette domain-containing protein	A0A2K9L3Z8	Tupanvirus	1.9e-61	29.8
WP_067444764.1\|862586_864047_-\|protease	DegQ family serine endoprotease	A0A1B1IT49	uncultured_Mediterranean_phage	5.4e-21	33.2
WP_003822547.1\|864296_864500_-	cold-shock protein	A0A2H4N7Y6	Lake_Baikal_phage	3.6e-24	80.9
WP_067439084.1\|864948_865254_+\|protease	ATP-dependent Clp protease adapter ClpS	A0A1B1IT64	uncultured_Mediterranean_phage	1.3e-12	43.9
WP_151086242.1\|865257_867555_+\|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	A0A223W0B1	Agrobacterium_phage	3.7e-157	40.4

DBSCAN-SWA_5

1217907 : 1223705

Acinetobacter_phage(33.33%)

capsid

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_067438309.1\|1217907_1218408_+	aminodeoxychorismate/anthranilate synthase component II	A0A0P0IKJ1	Acinetobacter_phage	7.2e-50	51.6
WP_067438306.1\|1218530_1218977_+	GatB/YqeY domain-containing protein	G3MAQ0	Bacillus_virus	5.9e-11	35.1
WP_067438300.1\|1219456_1220086_-	DUF421 domain-containing protein	NA	NA	NA	NA
WP_067444980.1\|1220236_1220722_-	phage virion morphogenesis protein	L7P7T2	Pseudomonas_phage	3.3e-15	37.0
WP_067439639.1\|1220724_1221630_-\|capsid	minor capsid protein	A0A0M4UTA3	Ralstonia_phage	4.8e-60	47.7
WP_067438294.1\|1221743_1221923_-	hypothetical protein	NA	NA	NA	NA
WP_151086305.1\|1221919_1222243_-	N-acetylmuramoyl-L-alanine amidase	E5EYD9	Acinetobacter_phage	2.3e-20	44.9
WP_082886393.1\|1222741_1222924_+	Com family DNA-binding transcriptional regulator	NA	NA	NA	NA
WP_151086308.1\|1222892_1223705_+	DNA adenine methylase	A0A2H4J8Q1	uncultured_Caudovirales_phage	1.1e-60	47.6

DBSCAN-SWA_6

1250079 : 1255921

Escherichia_phage(16.67%)

integrase

attL 1239846:1239860|attR 1251326:1251340

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1239846:1239860	attL	NA	NA	NA	NA
WP_067438235.1\|1250079_1251147_-\|integrase	site-specific integrase	G8C7S0	Escherichia_phage	3.8e-88	46.3
WP_067439632.1\|1251538_1252597_-	ImmA/IrrE family metallo-endopeptidase	A0A0U4JD08	Gordonia_phage	1.3e-19	28.3
1251326:1251340	attR	NA	NA	NA	NA
WP_067438231.1\|1252616_1253255_-	hypothetical protein	NA	NA	NA	NA
WP_067445003.1\|1253445_1253880_-	single-stranded DNA-binding protein	A0A1J0MFD7	Staphylococcus_phage	1.1e-09	38.4
WP_067445005.1\|1253876_1254503_-	hypothetical protein	S0A2A9	Cellulophaga_phage	3.5e-41	45.9
WP_067438223.1\|1254499_1255015_-	hypothetical protein	A0A0F7L6F4	uncultured_marine_virus	6.0e-15	35.5
WP_082886389.1\|1255075_1255921_-	KilA-N domain-containing protein	A0A0R6PDL1	Moraxella_phage	1.3e-27	52.5

DBSCAN-SWA_7

1260870 : 1270445

Pseudomonas_phage(37.5%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_067438197.1\|1260870_1261494_-	helix-turn-helix domain-containing protein	A0A0R6PJ00	Moraxella_phage	8.5e-24	35.4
WP_067438194.1\|1261601_1261790_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_067438191.1\|1261786_1261981_+	ribbon-helix-helix protein, CopG family	NA	NA	NA	NA
WP_067438187.1\|1262013_1262328_+	hypothetical protein	NA	NA	NA	NA
WP_067438184.1\|1262348_1262555_-	KTSC domain-containing protein	NA	NA	NA	NA
WP_067438181.1\|1262712_1262919_+	hypothetical protein	NA	NA	NA	NA
WP_067438178.1\|1262982_1263696_+	hypothetical protein	A0A0U4J8Z7	Pseudomonas_phage	2.7e-42	45.9
WP_151086321.1\|1263783_1264734_+	helix-turn-helix domain-containing protein	A0A1B0YZZ0	Pseudomonas_phage	1.3e-07	35.2
WP_067438172.1\|1264730_1265396_+	hypothetical protein	A0A1B0VMD9	Pseudomonas_phage	1.3e-17	36.7
WP_067438169.1\|1265397_1265598_+	hypothetical protein	NA	NA	NA	NA
WP_067438166.1\|1265584_1265818_+	hypothetical protein	NA	NA	NA	NA
WP_067438163.1\|1265804_1266359_+	hypothetical protein	Q7Y5V6	Haemophilus_phage	7.8e-29	51.8
WP_067438161.1\|1266355_1266778_+	recombination protein NinB	Q7Y5V7	Haemophilus_phage	1.7e-28	53.9
WP_156496273.1\|1266778_1266934_+	hypothetical protein	NA	NA	NA	NA
WP_151086323.1\|1266935_1267433_+	hypothetical protein	NA	NA	NA	NA
WP_067438156.1\|1267552_1268581_+	hypothetical protein	NA	NA	NA	NA
WP_067438152.1\|1268632_1269223_-	helix-turn-helix transcriptional regulator	Q7Y5W5	Haemophilus_phage	1.6e-08	30.9
WP_151086325.1\|1269359_1269566_+	hypothetical protein	NA	NA	NA	NA
WP_082886385.1\|1269587_1270445_+	KilA-N domain-containing protein	I6R977	Salmonella_phage	6.8e-32	40.6

DBSCAN-SWA_8

1472969 : 1482074

Tupanvirus(14.29%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_067441026.1\|1472969_1473566_+	bifunctional nicotinamidase/pyrazinamidase	A0A2K9L6K4	Tupanvirus	4.5e-22	36.9
WP_067444071.1\|1473704_1475399_+\|tRNA	glutamine--tRNA ligase/YqeY domain fusion protein	A0A222YZ70	Escherichia_phage	4.0e-201	61.5
WP_067441032.1\|1475547_1475967_+	Rrf2 family transcriptional regulator	NA	NA	NA	NA
WP_067441035.1\|1476101_1477316_+	IscS subfamily cysteine desulfurase	H7BUW1	unidentified_phage	3.9e-33	37.3
WP_067441038.1\|1477724_1478108_+	Fe-S cluster assembly scaffold IscU	A0A218MKD1	uncultured_virus	1.8e-53	79.8
WP_067441041.1\|1478110_1478377_+	DksA/TraR family C4-type zinc finger protein	K4F9U1	Cronobacter_phage	8.9e-15	50.0
WP_067444073.1\|1478628_1478871_+	recombinase RecA	NA	NA	NA	NA
WP_049257904.1\|1478927_1479248_+	iron-sulfur cluster assembly protein IscA	A0A2H4N7N5	Lake_Baikal_phage	7.0e-22	47.7
WP_067444077.1\|1479350_1479971_+	23S rRNA (uridine(2552)-2'-O)-methyltransferase RlmE	NA	NA	NA	NA
WP_067444078.1\|1480037_1482074_+	ATP-dependent metallopeptidase FtsH/Yme1/Tma family protein	E5EQU5	Bathycoccus_sp._RCC1105_virus	4.5e-114	43.1

DBSCAN-SWA_9

1881087 : 1930904

Pseudomonas_phage(18.52%)

portal,terminase,tRNA,integrase,head,protease,capsid,tail

attL 1876947:1876965|attR 1936859:1936877

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1876947:1876965	attL	NA	NA	NA	NA
WP_067440278.1\|1881087_1881783_-\|tRNA	tRNA (N6-threonylcarbamoyladenosine(37)-N6)-methyltransferase TrmO	NA	NA	NA	NA
WP_067439778.1\|1882027_1882468_-	MliC family protein	NA	NA	NA	NA
WP_067444319.1\|1882722_1883361_-	MBL fold metallo-hydrolase	NA	NA	NA	NA
WP_151086468.1\|1883490_1884072_+	oligoribonuclease	Q8B5Y0	Diachasmimorpha_longicaudata_entomopoxvirus	2.2e-26	38.6
WP_151086470.1\|1884219_1885860_+	glucose-6-phosphate isomerase	NA	NA	NA	NA
WP_067444316.1\|1885912_1886476_+	1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD	A0A223VZK2	Agrobacterium_phage	7.7e-08	30.2
WP_067439765.1\|1886531_1887026_-	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_067439763.1\|1887226_1889332_-	polyribonucleotide nucleotidyltransferase	NA	NA	NA	NA
WP_156496427.1\|1889543_1889714_-	hypothetical protein	NA	NA	NA	NA
WP_151086473.1\|1889827_1892023_+	TIGR01666 family membrane protein	NA	NA	NA	NA
WP_151086475.1\|1892323_1893364_-\|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	NA	NA	NA	NA
WP_067439757.1\|1893455_1894604_+\|integrase	tyrosine-type recombinase/integrase	A0A2H4J8L8	uncultured_Caudovirales_phage	3.0e-99	48.4
WP_151086478.1\|1894688_1894880_+	addiction module toxin, HicA family	NA	NA	NA	NA
WP_151086480.1\|1894966_1895383_+	HicB family protein	A0A0D4DCG1	Acinetobacter_phage	5.7e-16	35.9
WP_151086483.1\|1895436_1896237_-	DNA adenine methylase	Q5ZQW7	Pseudomonas_phage	3.7e-80	52.7
WP_151086485.1\|1896337_1896835_-	DUF2514 family protein	NA	NA	NA	NA
WP_167508202.1\|1896841_1896964_-	photosystem I reaction center subunit PsaK	NA	NA	NA	NA
WP_167508187.1\|1897085_1897250_-	hypothetical protein	NA	NA	NA	NA
WP_151086487.1\|1897251_1897800_-	TIGR02594 family protein	A0A060RFI8	Pseudomonas_phage	1.4e-49	50.8
WP_151086330.1\|1898119_1898383_-	hypothetical protein	NA	NA	NA	NA
WP_151086489.1\|1898370_1898760_-	hypothetical protein	NA	NA	NA	NA
WP_067445017.1\|1898756_1898999_-	hypothetical protein	NA	NA	NA	NA
WP_151086491.1\|1898995_1899700_-	hypothetical protein	NA	NA	NA	NA
WP_151086494.1\|1900567_1901602_-	hypothetical protein	NA	NA	NA	NA
WP_151086496.1\|1901650_1903588_-	hypothetical protein	NA	NA	NA	NA
WP_167508188.1\|1903571_1903904_-	hypothetical protein	NA	NA	NA	NA
WP_082887875.1\|1903940_1907186_-	DUF1983 domain-containing protein	Q9FZU3	Neisseria_meningitidis_phage	8.6e-285	57.5
WP_151086500.1\|1907195_1907927_-\|tail	tail assembly protein	Q9FZU4	Neisseria_meningitidis_phage	3.4e-64	56.2
WP_067523948.1\|1907923_1908661_-	C40 family peptidase	Q9FZU5	Neisseria_meningitidis_phage	5.7e-59	48.5
WP_151086502.1\|1908672_1909398_-\|tail	phage minor tail protein L	Q9FZU6	Neisseria_meningitidis_phage	4.7e-66	63.2
WP_067442220.1\|1909394_1909730_-\|tail	phage tail protein	A0A0S2SYI2	Pseudomonas_phage	1.3e-18	43.5
WP_151086505.1\|1909731_1913019_-\|tail	phage tail protein	A0A2R9YJM8	Escherichia_phage	6.7e-43	24.1
WP_067442223.1\|1913011_1913284_-	hypothetical protein	A0A2H4J4F7	uncultured_Caudovirales_phage	1.2e-11	44.6
WP_067442225.1\|1913331_1913646_-	hypothetical protein	A0A192Y8C0	Enterobacteria_phage	2.5e-08	33.0
WP_067442227.1\|1913659_1914307_-\|tail	phage tail protein	A0A0H5BBY3	Pseudomonas_phage	9.7e-47	43.2
WP_067448243.1\|1914395_1914737_-	DUF3168 domain-containing protein	NA	NA	NA	NA
WP_067442229.1\|1914717_1915194_-	hypothetical protein	A0A0R6PGZ1	Moraxella_phage	8.8e-05	35.2
WP_151086507.1\|1915194_1915515_-\|head	phage head closure protein	Q6JIM4	Burkholderia_virus	1.6e-10	37.4
WP_067448249.1\|1915575_1915854_-	hypothetical protein	NA	NA	NA	NA
WP_151086509.1\|1916218_1917130_+	hypothetical protein	A0A0M3LR56	Mannheimia_phage	5.0e-33	48.8
WP_064084338.1\|1917175_1917448_-\|head,tail	phage gp6-like head-tail connector protein	NA	NA	NA	NA
WP_151086513.1\|1917434_1917827_-	hypothetical protein	NA	NA	NA	NA
WP_067442237.1\|1917881_1919126_-\|capsid	phage major capsid protein	C7BGH0	Burkholderia_phage	5.5e-115	53.8
WP_151086516.1\|1919188_1919962_-\|protease	Clp protease ClpP	C7BGG9	Burkholderia_phage	2.8e-61	62.0
WP_151086518.1\|1919927_1921181_-\|portal	phage portal protein	C7BGG8	Burkholderia_phage	1.7e-100	48.4
WP_151086520.1\|1921177_1922851_-\|terminase	terminase large subunit	Q3HQS7	Burkholderia_phage	1.6e-157	52.7
WP_151086522.1\|1922838_1923567_-	hypothetical protein	NA	NA	NA	NA
WP_151086525.1\|1923702_1924065_-	HNH endonuclease	B5WZZ4	Pseudomonas_phage	9.6e-28	66.2
WP_067442247.1\|1924206_1924602_-	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA
WP_151086527.1\|1925008_1927891_-	DNA primase	A0A2H4JF22	uncultured_Caudovirales_phage	1.1e-76	31.3
WP_067442249.1\|1928039_1928585_-	KilA-N domain-containing protein	Q8SBE6	Shigella_phage	3.7e-23	52.6
WP_082880709.1\|1928597_1928825_-	hypothetical protein	NA	NA	NA	NA
WP_067442253.1\|1928936_1929629_+	helix-turn-helix transcriptional regulator	A0A1B5FPF4	Escherichia_phage	2.0e-29	36.0
WP_067442255.1\|1929810_1930044_+	hypothetical protein	NA	NA	NA	NA
WP_151086529.1\|1930040_1930529_+	hypothetical protein	NA	NA	NA	NA
WP_151086588.1\|1930547_1930904_+	hypothetical protein	C5IHK2	Burkholderia_virus	1.6e-06	39.3
1936859:1936877	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage