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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP041724 Staphylococcus lugdunensis strain SL55 chromosome, complete genome 4 crisprs csa3,WYL,DEDDh,cas3,DinG 2 2 7 0

Results visualization

1. NZ_CP041724
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP041724_1 921370-921453 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP041724_2 1210125-1210209 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP041724_3 1866457-1866542 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP041724_4 2375803-2375891 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
NZ_CP041724_1 1.1|921397|30|NZ_CP041724|CRISPRCasFinder 921397-921426 30 NZ_CP041724.1 1967534-1967563 1 0.967
NZ_CP041724_3 3.1|1866486|28|NZ_CP041724|CRISPRCasFinder 1866486-1866513 28 NZ_CP041724.1 1986290-1986317 2 0.929

1. spacer 1.1|921397|30|NZ_CP041724|CRISPRCasFinder matches to position: 1967534-1967563, mismatch: 1, identity: 0.967

gcccccaacacaaagaaatgcaacaagcat	CRISPR spacer
gcccccaacacaaagaaatgcatcaagcat	Protospacer
********************** *******

2. spacer 3.1|1866486|28|NZ_CP041724|CRISPRCasFinder matches to position: 1986290-1986317, mismatch: 2, identity: 0.929

ggggccccaacaaagagaatttcgaaat	CRISPR spacer
ggggccccaacaaagaggctttcgaaat	Protospacer
*****************. *********

CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_CP041724_2 2.1|1210153|29|NZ_CP041724|CRISPRCasFinder 1210153-1210181 29 NC_018265 Melissococcus plutonius DAT561 plasmid 1, complete sequence 120055-120083 6 0.793
NZ_CP041724_1 1.1|921397|30|NZ_CP041724|CRISPRCasFinder 921397-921426 30 NC_007058 Staphylococcus phage ROSA, complete genome 41575-41604 7 0.767
NZ_CP041724_1 1.1|921397|30|NZ_CP041724|CRISPRCasFinder 921397-921426 30 KT186243 Staphylococcus phage vB_SauS_phi2, complete genome 37496-37525 7 0.767
NZ_CP041724_1 1.1|921397|30|NZ_CP041724|CRISPRCasFinder 921397-921426 30 AY954955 Bacteriophage 42e, complete genome 41356-41385 7 0.767
NZ_CP041724_1 1.1|921397|30|NZ_CP041724|CRISPRCasFinder 921397-921426 30 AY954961 Bacteriophage ROSA, complete genome 41575-41604 7 0.767
NZ_CP041724_1 1.1|921397|30|NZ_CP041724|CRISPRCasFinder 921397-921426 30 NC_007052 Staphylococcus phage 42e, complete genome 41356-41385 7 0.767
NZ_CP041724_1 1.1|921397|30|NZ_CP041724|CRISPRCasFinder 921397-921426 30 AP013478 Uncultured Mediterranean phage uvMED DNA, complete genome, group G18, isolate: uvMED-CGR-U-MedDCM-OCT-S26-C62 18066-18095 9 0.7
NZ_CP041724_2 2.1|1210153|29|NZ_CP041724|CRISPRCasFinder 1210153-1210181 29 MT774376 CrAssphage cr55_1, complete genome 42412-42440 9 0.69
NZ_CP041724_2 2.1|1210153|29|NZ_CP041724|CRISPRCasFinder 1210153-1210181 29 MT774380 CrAssphage cr1_1, complete genome 46180-46208 9 0.69

1. spacer 2.1|1210153|29|NZ_CP041724|CRISPRCasFinder matches to NC_018265 (Melissococcus plutonius DAT561 plasmid 1, complete sequence) position: , mismatch: 6, identity: 0.793

caaagactttccaaaagaaagtccacgaa	CRISPR spacer
aaaagactttccataagaaagtctaaata	Protospacer
 ************ *********.* . *

2. spacer 1.1|921397|30|NZ_CP041724|CRISPRCasFinder matches to NC_007058 (Staphylococcus phage ROSA, complete genome) position: , mismatch: 7, identity: 0.767

gcccccaacacaaagaaatgcaacaagcat	CRISPR spacer
gttaccaacacaaagaaacgcaccaaggaa	Protospacer
*.. **************.*** **** * 

3. spacer 1.1|921397|30|NZ_CP041724|CRISPRCasFinder matches to KT186243 (Staphylococcus phage vB_SauS_phi2, complete genome) position: , mismatch: 7, identity: 0.767

gcccccaacacaaagaaatgcaacaagcat	CRISPR spacer
gttaccaacacaaagaaacgcaccaaggaa	Protospacer
*.. **************.*** **** * 

4. spacer 1.1|921397|30|NZ_CP041724|CRISPRCasFinder matches to AY954955 (Bacteriophage 42e, complete genome) position: , mismatch: 7, identity: 0.767

gcccccaacacaaagaaatgcaacaagcat	CRISPR spacer
gttaccaacacaaagaaacgcaccaaggaa	Protospacer
*.. **************.*** **** * 

5. spacer 1.1|921397|30|NZ_CP041724|CRISPRCasFinder matches to AY954961 (Bacteriophage ROSA, complete genome) position: , mismatch: 7, identity: 0.767

gcccccaacacaaagaaatgcaacaagcat	CRISPR spacer
gttaccaacacaaagaaacgcaccaaggaa	Protospacer
*.. **************.*** **** * 

6. spacer 1.1|921397|30|NZ_CP041724|CRISPRCasFinder matches to NC_007052 (Staphylococcus phage 42e, complete genome) position: , mismatch: 7, identity: 0.767

gcccccaacacaaagaaatgcaacaagcat	CRISPR spacer
gttaccaacacaaagaaacgcaccaaggaa	Protospacer
*.. **************.*** **** * 

7. spacer 1.1|921397|30|NZ_CP041724|CRISPRCasFinder matches to AP013478 (Uncultured Mediterranean phage uvMED DNA, complete genome, group G18, isolate: uvMED-CGR-U-MedDCM-OCT-S26-C62) position: , mismatch: 9, identity: 0.7

gcccccaacacaaagaaatgcaacaagcat	CRISPR spacer
atgagttacataaagaaatgcaaaaagcat	Protospacer
..   . ***.************ ******

8. spacer 2.1|1210153|29|NZ_CP041724|CRISPRCasFinder matches to MT774376 (CrAssphage cr55_1, complete genome) position: , mismatch: 9, identity: 0.69

caaagactttccaaaagaaagtccacgaa	CRISPR spacer
taaagactttcctaaagaaagtatttatc	Protospacer
.*********** ********* . ..  

9. spacer 2.1|1210153|29|NZ_CP041724|CRISPRCasFinder matches to MT774380 (CrAssphage cr1_1, complete genome) position: , mismatch: 9, identity: 0.69

caaagactttccaaaagaaagtccacgaa	CRISPR spacer
taaagactttcctaaagaaagtatttatc	Protospacer
.*********** ********* . ..  

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 1331435 : 1361688 31 Staphylococcus_phage(96.15%) tRNA NA
DBSCAN-SWA_2 1478404 : 1487423 7 uncultured_Mediterranean_phage(50.0%) tRNA NA
DBSCAN-SWA_3 1613090 : 1621786 8 uncultured_Mediterranean_phage(33.33%) NA NA
DBSCAN-SWA_4 2026191 : 2034661 9 Synechococcus_phage(33.33%) NA NA
DBSCAN-SWA_5 2313975 : 2331772 15 uncultured_Caudovirales_phage(58.33%) NA NA
DBSCAN-SWA_6 2346294 : 2352915 8 Pandoravirus(16.67%) NA NA
DBSCAN-SWA_7 2447163 : 2537995 93 Staphylococcus_phage(57.14%) holin,terminase,tRNA,head,tail,portal,capsid NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage