CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP044060	Aeromonas veronii strain FDAARGOS_632 chromosome, complete genome	3 crisprs	DinG,DEDDh,cas3,WYL,csa3	0	0	6	0
NZ_CP044061	Aeromonas veronii strain FDAARGOS_632 plasmid unnamed1, complete sequence	0 crisprs	NA	0	0	0	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP044060_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP044060_1

645888-646003

Orphan

Consensus_repeat	Method
CCCAGACAAGTGAAGGGAAGTGAAATGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP044060_1

>merge|NZ_CP044060|1|645888-646003|CRISPRCasFinder
CCCAGACAAGTGAAGGGAAGTGAAATGCGTCATGCAACATGATCCATTCCTCCCTCTGTCAAAGCAGTAGATGGCGATGGGACAAATCCCCAGACAAGGGAAGGGAAGTGAAATGC

>NZ_CP044060|1|1|645888-646003|CRISPRCasFinder
CCCAGACAAGTGAAGGGAAGTGAAATGC	GTCATGCAACATGATCCATTCCTCCCTCTGTCAAAGCAGTAGATGGCGATGGGACAAATC
CCCAGACAAGGGAAGGGAAGTGAAATGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP044060.1\|WP_150389001.1\|642233_642836_-\|DsbE-family-thiol:disulfide-interchange-protein	unknown	unknown	gnl\|CDD\|239308
NZ_CP044060.1\|WP_150389000.1\|641031_642237_-\|heme-lyase-NrfEFG-subunit-NrfF	unknown	unknown	gnl\|CDD\|274449
NZ_CP044060.1\|WP_150388999.1\|640310_640940_-\|DUF2268-domain-containing-protein	unknown	unknown	gnl\|CDD\|370782
NZ_CP044060.1\|WP_150388995.1\|636294_637437_+\|2-aminoethylphosphonate--pyruvate-transaminase	unknown	unknown	gnl\|CDD\|184076
NZ_CP044060.1\|WP_150388996.1\|637433_638873_+\|aspartate-aminotransferase-family-protein	unknown	unknown	gnl\|CDD\|180390
NZ_CP044060.1\|WP_106843831.1\|646691_647291_-\|cytochrome-c-nitrite-reductase-pentaheme-subunit	unknown	unknown	gnl\|CDD\|183264
NZ_CP044060.1\|WP_005352447.1\|667460_669128_+\|methyl-accepting-chemotaxis-protein	unknown	unknown	gnl\|CDD\|223910
NZ_CP044060.1\|WP_150389008.1\|664965_666639_-\|anaerobic-glycerol-3-phosphate-dehydrogenase-subunit-A	unknown	unknown	gnl\|CDD\|236847
NZ_CP044060.1\|WP_005333476.1\|669260_670472_+\|ROK-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|366120
NZ_CP044060.1\|WP_150389006.1\|662456_663659_-\|anaerobic-glycerol-3-phosphate-dehydrogenase-subunit-C	unknown	unknown	gnl\|CDD\|132422
NZ_CP044060.1\|WP_150388997.1\|638865_639705_+\|phosphonoacetaldehyde-hydrolase	unknown	unknown	gnl\|CDD\|184075
NZ_CP044060.1\|WP_150390510.1\|647344_648787_-\|ammonia-forming-nitrite-reductase-cytochrome-c552-subunit	unknown	unknown	gnl\|CDD\|236854
NZ_CP044060.1\|WP_074045197.1\|666881_667337_-\|YchJ-family-protein	unknown	unknown	gnl\|CDD\|225557
NZ_CP044060.1\|WP_150389004.1\|646014_646695_-\|cytochrome-c-nitrite-reductase-Fe-S-protein	unknown	unknown	gnl\|CDD\|274451
NZ_CP044060.1\|WP_150388994.1\|635321_636266_-\|phosphonate-utilization-transcriptional-regulator-PhnR	unknown	unknown	gnl\|CDD\|132380
NZ_CP044060.1\|WP_150388993.1\|634181_635201_-\|putative-2-aminoethylphosphonate-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|274494
NZ_CP044060.1\|WP_150389005.1\|649507_662359_+\|retention-module-containing-protein	unknown	unknown	gnl\|CDD\|132699
NZ_CP044060.1\|WP_150389007.1\|663710_664976_-\|glycerol-3-phosphate-dehydrogenase-subunit-GlpB	unknown	unknown	gnl\|CDD\|213807
NZ_CP044060.1\|WP_150388998.1\|639803_640256_-\|NUDIX-domain-containing-protein	unknown	unknown	gnl\|CDD\|240051
NZ_CP044060.1\|WP_150389002.1\|642832_644800_-\|heme-lyase-NrfEFG-subunit-NrfE	unknown	unknown	gnl\|CDD\|274448

Protein	Function_ID	Function_description	E-value
NZ_CP044060.1\|WP_150389001.1\|642233_642836_-\|DsbE-family-thiol:disulfide-interchange-protein	gnl\|CDD\|239308	cd03010, TlpA_like_DsbE, TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif. Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.	7.96693e-54
NZ_CP044060.1\|WP_150389000.1\|641031_642237_-\|heme-lyase-NrfEFG-subunit-NrfF	gnl\|CDD\|274449	TIGR03147, cyt_nit_nrfF, cytochrome c nitrite reductase, accessory protein NrfF. [Energy metabolism, Electron transport].	8.15326e-61
NZ_CP044060.1\|WP_150388999.1\|640310_640940_-\|DUF2268-domain-containing-protein	gnl\|CDD\|370782	pfam10026, DUF2268, Predicted Zn-dependent protease (DUF2268). This domain, found in various hypothetical bacterial proteins, as well as predicted zinc dependent proteases, has no known function.	3.04712e-26
NZ_CP044060.1\|WP_150388995.1\|636294_637437_+\|2-aminoethylphosphonate--pyruvate-transaminase	gnl\|CDD\|184076	PRK13479, PRK13479, 2-aminoethylphosphonate--pyruvate transaminase; Provisional.	0
NZ_CP044060.1\|WP_150388996.1\|637433_638873_+\|aspartate-aminotransferase-family-protein	gnl\|CDD\|180390	PRK06082, PRK06082, aspartate aminotransferase family protein.	0
NZ_CP044060.1\|WP_106843831.1\|646691_647291_-\|cytochrome-c-nitrite-reductase-pentaheme-subunit	gnl\|CDD\|183264	PRK11659, PRK11659, cytochrome c nitrite reductase pentaheme subunit; Provisional.	1.63682e-79
NZ_CP044060.1\|WP_005352447.1\|667460_669128_+\|methyl-accepting-chemotaxis-protein	gnl\|CDD\|223910	COG0840, Tar, Methyl-accepting chemotaxis protein [Cell motility and secretion / Signal transduction mechanisms].	6.99484e-73
NZ_CP044060.1\|WP_150389008.1\|664965_666639_-\|anaerobic-glycerol-3-phosphate-dehydrogenase-subunit-A	gnl\|CDD\|236847	PRK11101, glpA, anaerobic glycerol-3-phosphate dehydrogenase subunit A.	0
NZ_CP044060.1\|WP_005333476.1\|669260_670472_+\|ROK-family-transcriptional-regulator	gnl\|CDD\|366120	pfam00480, ROK, ROK family.	3.62058e-42
NZ_CP044060.1\|WP_150389006.1\|662456_663659_-\|anaerobic-glycerol-3-phosphate-dehydrogenase-subunit-C	gnl\|CDD\|132422	TIGR03379, glycerol3P_GlpC, glycerol-3-phosphate dehydrogenase, anaerobic, C subunit. Members of this protein family are the membrane-anchoring, non-catalytic C subunit, product of the glpC gene, of a three-subunit, FAD-dependent, anaerobic glycerol-3-phosphate dehydrogenase. GlpC lasks classical hydrophobic transmembrane helices; Cole, et al suggest interaction with the membrane may involve amphipathic helices. GlcC has conserved Cys-containing motifs suggestive of iron-sulfur binding. This complex is found mostly in Escherichia coli and closely related species. [Energy metabolism, Anaerobic].	0
NZ_CP044060.1\|WP_150388997.1\|638865_639705_+\|phosphonoacetaldehyde-hydrolase	gnl\|CDD\|184075	PRK13478, PRK13478, phosphonoacetaldehyde hydrolase; Provisional.	4.82184e-159
NZ_CP044060.1\|WP_150390510.1\|647344_648787_-\|ammonia-forming-nitrite-reductase-cytochrome-c552-subunit	gnl\|CDD\|236854	PRK11125, nrfA, ammonia-forming cytochrome c nitrite reductase.	0
NZ_CP044060.1\|WP_074045197.1\|666881_667337_-\|YchJ-family-protein	gnl\|CDD\|225557	COG3012, COG3012, Uncharacterized protein conserved in bacteria [Function unknown].	2.47005e-57
NZ_CP044060.1\|WP_150389004.1\|646014_646695_-\|cytochrome-c-nitrite-reductase-Fe-S-protein	gnl\|CDD\|274451	TIGR03149, cyt_nit_nrfC, cytochrome c nitrite reductase, Fe-S protein. Members of this protein family are the Fe-S protein, NrfC, of a cytochrome c nitrite reductase system for which the pentaheme cytochrome c protein, NrfB (family TIGR03146) is an unambiguous marker. Members of this protein family show similarity to other ferredoxin-like proteins, including a subunit of a polysulfide reductase. [Energy metabolism, Electron transport].	7.61073e-131
NZ_CP044060.1\|WP_150388994.1\|635321_636266_-\|phosphonate-utilization-transcriptional-regulator-PhnR	gnl\|CDD\|132380	TIGR03337, phnR, phosphonate utilization transcriptional regulator PhnR. This family of proteins are members of the GntR family (pfam00392) containing an N-terminal helix-turn-helix (HTH) motif. This clade is found adjacent to or inside of operons for the degradation of 2-aminoethylphosphonate (AEP) in Salmonella, Vibrio Aeromonas hydrophila, Hahella chejuensis and Psychromonas ingrahamii. [Regulatory functions, DNA interactions].	9.8508e-146
NZ_CP044060.1\|WP_150388993.1\|634181_635201_-\|putative-2-aminoethylphosphonate-ABC-transporter-substrate-binding-protein	gnl\|CDD\|274494	TIGR03261, phnS2, putative 2-aminoethylphosphonate ABC transporter, periplasmic 2-aminoethylphosphonate-binding protein. This ABC transporter extracellular solute-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely. [Transport and binding proteins, Amino acids, peptides and amines].	7.59457e-162
NZ_CP044060.1\|WP_150389005.1\|649507_662359_+\|retention-module-containing-protein	gnl\|CDD\|132699	TIGR03660, T1SS_rpt_143, T1SS-143 repeat domain. This model represents a domain of about 143 amino acids that may occur singly or in up to 23 tandem repeats in very large proteins in the genus Vibrio, and in related species such as Legionella pneumophila, Photobacterium profundum, Rhodopseudomonas palustris, Shewanella pealeana, and Aeromonas hydrophila. Proteins with these domains represent a subset of a broader set of proteins with a particular signal for type 1 secretion, consisting of several glycine-rich repeats modeled by pfam00353, followed by a C-terminal domain modeled by TIGR03661. Proteins with this domain tend to share several properties with the RtxA (Repeats in Toxin) protein of Vibrio cholerae, including a large size often containing tandemly repeated domains and a C-terminal signal for type 1 secretion. [Cellular processes, Pathogenesis].	4.42345e-20
NZ_CP044060.1\|WP_150389007.1\|663710_664976_-\|glycerol-3-phosphate-dehydrogenase-subunit-GlpB	gnl\|CDD\|213807	TIGR03378, glycerol3P_GlpB, glycerol-3-phosphate dehydrogenase, anaerobic, B subunit. Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase. [Energy metabolism, Anaerobic].	0
NZ_CP044060.1\|WP_150388998.1\|639803_640256_-\|NUDIX-domain-containing-protein	gnl\|CDD\|240051	cd04695, Nudix_Hydrolase_36, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required.	1.71737e-73
NZ_CP044060.1\|WP_150389002.1\|642832_644800_-\|heme-lyase-NrfEFG-subunit-NrfE	gnl\|CDD\|274448	TIGR03145, cyt_nit_nrfE, cytochrome c nitrate reductase biogenesis protein NrfE. Members of this protein family closely resemble the CcmF protein of the CcmABCDEFGH system, or system I, for c-type cytochrome biogenesis (GenProp0678). Members are found, as a rule, next to closely related paralogs of CcmG and CcmH and always located near other genes associated with the cytochrome c nitrite reductase enzyme complex. As a rule, members are found in species that also encode bona fide members of the CcmF, CcmG, and CcmH families.	0

>NZ_CP044060.1|WP_150389002.1|642832_644800_-|heme-lyase-NrfEFG-subunit-NrfE
MLAELGYLSLLLAAALSLLQGTLPWLGLRLASPTLLRCATPLALINAILLLTALLLLASCFAQDDFTVSYVAQHANSALPLGFKLAAVWGGHEGSMLFFVFALSLWGALVALCSRRVDPLITARVLAIMGLIVGLFGLYTLIFSSPFDRQFPGPLEGRDLNPMLQDIGLIIHPPLLYLGYVGFAVNFAFAMAALHSGRLDGAVAHWSRPWALGSWIFLTAGIVLGSWWAYYELGWGGWWFWDPVENASLLPWLLGTALLHALIVCEKRGAYGHAVLLLSIFTFALSLLGTFVVRSGVLTSVHAFAVDPNRGLTLLLLLGLLLTCALTLFALRADIRAPYARFGLLSKEGLLGAAILLLCVACASVLLGTFYPMVFQSLHLGSLSVGAPYFNTIFVPLALCLMGLMTQLPRLRWQQLAAGSRLNSLLPPLFGLLGGGLLSLAYLEQGSFSGSWIGILANMVSLWLMASLLLPLMQPTLLREFTLNRFGSLLAHLGVAVCALGIAQVSHQSQEGGTVLIANKPYQLGAFEFRYEGREPVIGPNYTAERITLSVHKNGKEVARLTPERRHYSVRTMNMNEPGIAWGMLGDLYVVLGEKMGPDAYAMRLHYKPLVRWIWLGGLLMMAGGTLRLLARRPLLASRPVAVGTSHHKLEQEAL
>NZ_CP044060.1|WP_150389001.1|642233_642836_-|DsbE-family-thiol:disulfide-interchange-protein
MRSRLRLFLPLLLTLSLGILLWLGLGNNPYSQDDATLGRTLPAWQSDNLLDGSRLQTASLKGEPFVLNVWASWCTNCRAEHPLLSELAATVPLYGLNYRDKGDAARAWLIQAGNPYRAVLADPDGKLALELGVYGTPETYLFDADGALLARHTGELTKGIWQRQFAPLLDQARTDAQLKAATTAPAIAPSIATSARETQP
>NZ_CP044060.1|WP_150389000.1|641031_642237_-|heme-lyase-NrfEFG-subunit-NrfF
MMCRSLACTLLALGMLLSATAYSSGVDTYQFRHPELQNRAQELARALRCPQCQNQNLVESNSPIARDLRLEVYRWVDEGQSDEQVIARMTERFGDFVRYDPPFKASTALLWGGPLLLLGLALLTLFRSLTRTKAQPIPVVKAIVEAPPQPAADPRSALNLLIMHGEQAGLSPDQPLYRELSAARLASAIPAAELALRAQLANQHNNRGRNNRHGRALLLLGLLAIAAVAAVYLGTGRYQAWQDYASRPDPLAGLSPRDLQDKELGSLHQKLQRNPADLDSWAALGQLYLYRGEYDNALLAYQRIALLEGGASAATQAAQATVLYYQAGQQLTPEATRLLESALKQDAGEVSALMLLASDHFLHGRYSQAIALWQQLLDGERPRINRAALIEAIQTASIMGG
>NZ_CP044060.1|WP_150388999.1|640310_640940_-|DUF2268-domain-containing-protein
MQLTLLNDSGKFDGLDDTIRHVFAETAHKLNALFDLSQLDVTFSPFAEGDAPDSGIGGWAINMYRIELQLDLERPDIKEVIITELPAVLAHEVHHIVQKKNKVEAETLAENLIFEGLACYFEQRFNGGTLPSLFKASQHHDWQALLAEMTPHLSSKQFNFFDFFYCRDNRPFPKYAGYWVGFNLVANYLAKNGLNEIEVMGLPAEAYFN
>NZ_CP044060.1|WP_150388998.1|639803_640256_-|NUDIX-domain-containing-protein
MIPIRCKAVSGVALTTVDGETRLLVMKRVKGGFWCHVAGTVEAGETGWQSIIREFGEETGIRVTELYNGQYLEQFYEASLNTIEVVPVFVVYCPANQAVTLNDEHTEYRWCSLAEAKALVSFPGQKALYDHIWHHFVDNAPSPLMRVDIR
>NZ_CP044060.1|WP_150388997.1|638865_639705_+|phosphonoacetaldehyde-hydrolase
MTDLQIAIHPTTDVEALILDWAGTVVDFGSFAPTSIFVEAFARAYDFPVTLDEARQPMGLGKWDHIAALGRLPSVDARWQARFGHPMSHAEVDHIYHTFMPLQIAAVTRFAAPIPGVLPVLDVLRGQGMKIGSCSGYPRPVMEALVPAAADHGYRPDHWVATDDLKAGGRPGPWMALANVIELGVSAVHRCIKVDDAVPGIREGLNAGMWTVGLSVSGNEFGATWEEFAAMSEAEIAAWRAPAEAKLRAAGAHYVIDTLADIAPVIADINRRLAAGERP
>NZ_CP044060.1|WP_150388996.1|637433_638873_+|aspartate-aminotransferase-family-protein
MTSMLAQGRDLRGRDLHDHKLHGSGRADSEGDINLGEGRARWWAGQSEDVRAGLAEDSRYFLHQALSTPCLDLIEGAQGSWLTSISGKRYLDFHGNSVHQLGHGHPRVVAAVQQQLADLPFAPRRYTHQVAIDCARTLAELAPGDLNRVLFAPGGSEVVGIALKLARFITGNSKVVSLWDAFHGASLDAISVGGEACFRAGMGPLMAGVERIPPPTRYRGVWYRGEGDDLHYADYLEYVIEKEGGIGAFIAEPIRNTDVQVPSKAYWQRVREICDRHKVLLIVDEIPNALGRTGHWFSFEEFGIEPDIICLGKGLGGGVVPFAALITRDRFNQAAAISLGHYTHEKSPIGCAAALASIATIREEGLLAKAQEDGRFMAAELGKLAERHPLIGQVRGIGLLWALDLVVDHQSRTRNSQATERLLYRCLELGLSFKVSQGNVIQLSPPLNITRADLVRAITILDRALGEIALSPKQEHHHD
>NZ_CP044060.1|WP_150388995.1|636294_637437_+|2-aminoethylphosphonate--pyruvate-transaminase
MTHIPAAPAAVDYLLLTPGPLSTTATVRAAMLQDSCTWDADYNLGVVEPIRRELVRLATGPEYQSDYSAVLLQGSGSYVVESVLGSAIGVDECLLIINNGAYGARMGEMARCLGLRHHELDCGETTRPEPDAIEAMLARHPEITHLAMVHCETTTGMLNPLEEVAALCQRRGIRLIVDAMSSFGGIPIDMGRLGIEFLISSANKCIQGVPGFGFVIARRAALTACAGRARSVSLDLHAQWQTMEQQGGKWRFTSPTHTVLAFAQALRELDEEGGIEARHQRYGENQRTLVAGMAALGFAPLLPEQWQSPIITAFYSPAHPDYRFADFYQRLKAQGFVIYPGKVSQADCFRIGNIGDVTPERVRDLLAAMASACYWQGDAR
>NZ_CP044060.1|WP_150388994.1|635321_636266_-|phosphonate-utilization-transcriptional-regulator-PhnR
MSALWVTAPPRSKGWRYVQQKIHFQRRDRDNLGSLNSRGAAGIYQRMLMLPCNDRADDLPCAQPIAQLIAQLIAKPGIFMSKPQYLQIKDALANQILAGGLAPNDKLPSERLLGELYGTTRVTIREALVQLEANGLIYREDRRGWFVTPPRFRLNPRRTSNFHQIVREQGGEPRTELLEKSRQAVPPALMAQLQLKPFDSLFLLKRLRYANGRAICYCENHCLPERVPGLLELDLNGSLTEIYQAHYDLHYARMQVRFFPTALPDEVAKALGATAGLPALRLERLNFDQHGRVLDFDLEYWRHDSLEIEVDTQD
>NZ_CP044060.1|WP_150388993.1|634181_635201_-|putative-2-aminoethylphosphonate-ABC-transporter-substrate-binding-protein
MKQGTHLLAAAVLAAMTAPALAATDLTVYTAFEPEQLNELKTAFERQHPDINIKWVRDSTGVVTARLLAEKAQPKADVVWGLAATSLMQLDQQQMLNAYAPKGLDKLDSRFRDSKAEPHWIGLDAFFSAICFNKVEAEKQGIPAPTSWAGLTKPIYKGKVIMPNPSSSGTGYLSVAGWLQTMGEQQGWQFMNGLHQNIDRYTHSGSAPCKLAASGETVIGISFDFPATSLKAKGAPIEVVFPKEGSGWDMEAAAIIKGTPKLEAAKQLLDFAATEQANALYNKSFAVVAIPDVAQPRAGYPADIKGQMIDNDFSWAARERNAILAQWSASFDGKTEAKQ
>NZ_CP044060.1|WP_150389004.1|646014_646695_-|cytochrome-c-nitrite-reductase-Fe-S-protein
MSCSRRDFMAGMGAGALIMMTGPTRSLATPLAHSQTIDGIRYGMIHDETACIGCTACMDACREVNQVPQGVSRLEIIRSGPIGEFPDAEYRFFRKSCQHCDNAPCVHVCPTGASHIRKEDGIVDVDADLCVGCMYCLAACPYQVRFINPVTRVADKCDFCRKTNLAAGKEPACVESCPTKALVFGNLDDPDSPIAQRLVKETTYRYKQALGTSPKMYRVPKGEITS
>NZ_CP044060.1|WP_106843831.1|646691_647291_-|cytochrome-c-nitrite-reductase-pentaheme-subunit
MGDLTMDFLRLMLMAAMLLTSLQGQAAEPAAAPVPATHEVEFLRNPDKACTDCHKEQSEGMHGKHGQATNPNNLKPVTCTNCHGQPSPQHREGVKDVMRFSHSLKDKESIKLYPISEQNGVCMSCHEPKPLREALWAHDVHATKLTCTSCHQLHPAKEPMVGIPEKSRIKLCVDCHSKQHEASKARQEQSKPATGKEAS
>NZ_CP044060.1|WP_150390510.1|647344_648787_-|ammonia-forming-nitrite-reductase-cytochrome-c552-subunit
MNVGSQHRHIKLGLAALLLTTSLGTSGWALADDATTNGKIEARSELFAKDHADQFTSWQATSESKERTDALAEDPNMVVLWGGYPFAKDYNKPRGHFYALTDVRETLRTGAPKTAEDGPLPMACWSCKGPDVARVIDEKGEDGYFKGMWAKGGPEVVNTIGCADCHDTASKEFKEGKPALHLSRPYAERAMTAIGKPFKDQGRFDQQSQVCGQCHVEYYFSGPTKAVKFPWDKGTTVEQMEAYYDEIGFADWTHALSKTPMLKAQHPEYETWRAGIHGQNNVACVDCHMPKVQNEQGKVYTDHKVGNPFDRFEQTCRNCHTQSKEMLQGIVKQRKEAVIETKLKVEKQLVHAHFEAKAAWDAGATEAEMKDILQDIRHAQWRWDYAIASHGVQMHAPEVALKVLGSALDKAADARTKLARLLASKGISHEIAIPDISTKEKAQAALGMDMKQFNSDKAQFLKTTVPAWDAEAKAAGRLAQ
>NZ_CP044060.1|WP_150389005.1|649507_662359_+|retention-module-containing-protein
MAELQIEKSTVISQLEGSVFVISADGSVIRAKVGMALQPGDRLQTAQGGHFQLAEPGSDPAGEQDMAAKPEPAADGQQTDPELASLQEAIRQGIDPTELFQETAAGNAAAAGNIGGVAGSSSGGFVVVDRTNDATLAEAGFDTDHAVQSVGDELLFSEERDFFAAITITEPQTSDNIINADEAAGVIIRGVVDDVEVGQPVTVTLIDQAGNSLTVTTVVLPGLVWEANFGDVTGKLVDGPLQIVANTQDQAGNNASDTGQTLLDTITTITLDLADESDTGASQTDDLTRDNTPLLQGKGEPGATVTLSLGGSVLTVLTVDAAGNWQYQLPQTLADGQYQFQVNSVDIAGNRASDTLIINVDTQAFIDIEDLDSAALFGNSSATLSGSTSNVEAGQSVIITLVDSNGQPLLTTSAQVGADGRWQVSGLDLSGINQSFEVRASVTDLAGNSASDGAPLIGQSETLTLSEAGLAGGPITATGSLNTGAGQDGNLQVQFAADQSALEGLGLVSHGAPLGYIINGQTLTASAGGATVFTLTLNSDGSYRIVWSQSLDHGQDVLRLPFNLEYRDSDGDLVKAPLVINLVDSNPPSFEIPAIPLTEDAFTNGAAVVGESSFVVKHTADPLLVDSLVFSNQSNTLTTLNGSGLASDGHPLTFEFADDRTLVGYYLDGSGQRVEVLRAELNAQQQGSDLAGRVVVTLTGPLDHQGSDTLSLGLQVSANEIDGDSTSANLTLTVNDGSDPALGIDKGVALQEGGNQSIDGQLPVTVGSDRLVSLNFEASQPALDGLTSQGKATRYEVQDNQLIVKDWQGKTILTVTIGLDGKYNVSLTGVFDEPEATNSLNLGLKVQGSDFDGDKSNLGTLNITITDGALPQVNPVSLTLTEDSNWQQGQTLDGDLTITAGSDPLASITFDANQPGLQGFTSSKQAVTIAVADHRIEGRTPDGKLVFELTLGNDGKYSFTLHQPLDQGSADSLLKAGFTLLDSDGDKVSSSITVAVGDGANPTISAVTGTTITEMAQGETAAVSTMSFSVAHGSDALDPNSLGFDIVAIQSTLTGLTSHGNPVTFTVDPATGQLVGTAGGQVVLRAELSLVDNNGNWSVTAKVTLSGELDHKGSESLNLPLAVTLADKDGDRIGTTLPLTIADGKAPSFIPGKGVSLDEGDLTGSNSLSQTGHFDVQAGSDRVVEVAFADGSEQPALTALGKPVQYELVDGDPAIPGSQLLKGYVMVDGQRVEVFEVKLIGSLEQAGKNGFDYQVTLYQGLHQGGNAVTELPIKVIVNDYDKAGGNNDSTSGTLNIQIGEGEKPTLTLTDVTLNEGRFDGANSAVDDQQASGKIIIKADSDPVTDVRLTLSGQVMDASGKPITHNGETLTWKAVGTDGHTFQAVTSGGLVVMTVSIPTVPATIAAHTSAEIGYQVTVHTNLDHGADNKLELNLPVEVTDSDGSKNQGTATITVSDSADPVLGLDKGVALQEGGNQSIDGQLPVTVGSDRLVSLNFEASQPALDGLTSQGKATTYEVQDNQLIVKDWQGKTILTVTIGLDGKYSVALTGVFDEPEATNSLNLGLKVQGSDFDGDKSNLGTLNITITDGALPQVNPVSLTLTEDSNWQQGQTLDGDLTITAGSDPLASITFDANQPGLQGFTSGKQAVTITVADHRIEGRTPDGKLVFELTLDNDGKYSFTLHQPLDQGSADSLLKAGFTLLDSDGDKVSSTITVAVGDGANPTISAVTGTTITEKAQGETAAVSTMSFSVAHGSDALDPNTLGFDIAAIQSTLTGLTSHGNPVTFTIDPATGQLVGTAGGQVVLRAELSLVDNNGNWSVTAKVTLSGELDHKGSESLNLPLAVTLADKDGDRIGTTLPLTIVDGKAPSFIPGKGVSLDEGDLTGSNSLSQTGHFDVQAGSDRVVEVVFADGSQQPALTALGQPVKYELVDGDSAIPGSQLIKGYVMVDGQRVEVFEVKLIGSLDQAGKNGFDYQVTLYQGLHQGGNAVTELPIKVIVNDYDKAGGNNDSTSGTLNIQIGEGEKPTLTLTGVTLSEGRFDGANSAVDDQQASGKITIKADSDPVTDVRLTLFGQVMDASGKPITHNGETLTWKAVGTDGHTFQAVTSGGLVVMTVSIPTVPATIAAHTSAEIGYQVTVHTNLDHGADNKLNLTLPIKVTDSDGSVITGSTTAVITDADNPVITSIEGVTVKESDLNGGSGQHSGTSPSGRGEVAIGQVAIAAGSDRVASLQLDVARFNALNTLTSGGKVVTIGADSQPGVYLGKDSAGKLIFKLTLDVSGRYTFELIGNLDHRAQGKDLLDIQLPLQARDSDGDLSAEVIGHVSVQDDVPVAVDANKTLNEGAKVTGDLLATASEGADDAVVKSVTINGTEHPIAAAGNTTISVTDGTGQVIGTLVINAEGNYSFTARSGIDHSNNTLVQQIEFHLMDGDGDIDDGVLTLTIRDEAGTLSVSAVTGQEDAGATDPSQGIPITMNLDVGDFDRGEHVEQLLIQAPANAQGTFYFNGVALTTITLGGKTWYQVPPEAMVAVANTNDKFQLTGVTFVPNHDYSNYDLGGNPLRFPVQLQVGVTEGSKPPVLTGNLDITVQGIADKPLWDGASTNQHYTTNEDSTGIALNVKATLTDIDGSETLSYQIKWESGQGTLTLNGKVLTPGANGLYTVAAGDINKVTVVPGKDFSGDIKLSVTPISTEKNPIVQGQGTAQGDKIDLVINVNPVADDAKLTVRDIQGKEDTLLDLGSKIALAHLGDKLDGSEQMFVRISGLPDGATLLLGGSAVAQNIAGYYEVPFDRIGELKLQPPKNSNVDFDLTIKGVVKDTATLTDANGQTHTVVNEKETGSQTLHVDLVGVVDQPHFELGNTGWEAEGTGYATTVGEDGRAPLNFTLTSGEWVDTPHDTSESLNVVLQGLPEGARVFDTNGKELTLTFAGLDAHGKPTYQVDVSDFGNLLIQPPHNSTADLNLIAKVVVTENDGDHKSFDVPLHIKVEPEIDATDYSKTSHGLEDQFTVLDWHPTLTDGAEKVTALSLSGVEDGYQIWLRVGSVESPLTVVSGKVTLTATQLDSLLNGGQLLVKAPEDSDRDTNIQSHVTVTQHDVDSGAVAEKVIDGNLHVDIQAVVEPDGVLTQSGGALVGQSGADIDLTGRFVFTDLDPSSVEEIDYLVINLPVLNGGAGDQFVVVGGINNGNGSWIVPAGNLGSFKLHAPDGFVGKVEPIRIDAMVIDRGDDGDASAHVKVSLETSAEFENQPVTPKTPAATVDIDDNSVLVGKEDIRVDFGQQLKGVIHIGAADQASDEVTIVLKGLPAGVTISGAEYNISTGEYVIKVPPSLAGLEGLTLGLPQDFAGSLNIEVKVVNTDTASGDIKVDSSTVRVDVAPVVDVNGGRGEHPELTLTVQDTNQDGQPDNLEDSEIHLDLSVKLADISPSIAGGGLETVERVTITVDAKYGYFLDGSGKPVNTLVVNDVAALKDLVFVPKEHFSGQVPLDIKVDIVDTALVGGQQVTDSGSWSGQVGFEVRPVNDPAQLSVRSVTGSEDGTVNLAGFGATLIDNDGSEQIVALQIKGVPDGFTLSAPAVNNGGGVWQIPVGTDFSKLTLIPPADFSGTVDLSLSAFTLDKGLTIPLETSGSFTVTVNPVGDALIADIQGQASGTEGDVITLDLGLETRDTQPTGGSAGNVYENKPEQVRVTIEGVPDGAEIRLPNGVAGTVVDLGGGRWQVTTEGGKLGAVELVTNDANGALDLKITAQSLDNGALGPEVNGTIHVDVSPVNDAPINVLPTTPQVAQEDQPFVIHGLQVKDVDAGNSPIKITLSVEHGTLTLPAGSGVTVVGNGTGSLVLTGTLADLNALLSGGVTYQGNSDFYGNDALTMVTNDQGNTGSGGALSDTDVLPIEVQPVNDAPVNQLPGSMTVKEDGSLSLSGVSVKDVDAGSAPVSMVLRVEHGVLTLLGATGAVMVQGAGTSEITLVGSLADLNQLLASNLHYEPAKDFWGEDTLTVTTSDQGNSGAGGSLSDTDQVTITVTPEPDMPGLTVDQHAFHALQGAVIPLGINASVVNPATGELSIRISGLNGAQVQDEHGQSVGHADGNGDWLIPADHSVPLYFSGFGDGDHVLGISAESSVGGSTVSTPLETITVHGQSGHELVGSDQGDWLFGSSGDDRLLGGHGNDILTGGAGSDLFVWQHGDEGSQGQPAIDTITDFHPEQGDKIDLADMLQGVTGNGVDDLLKHLSASVTTGSNGLSDVNLSVSPAGDGQITQQITLKDVDLTSWNLTSTSSHDILQSMLEDQHSLIIQHP
>NZ_CP044060.1|WP_150389006.1|662456_663659_-|anaerobic-glycerol-3-phosphate-dehydrogenase-subunit-C
MLLDHANQTFDQCIKCTVCTAYCPVAKANPAYPGPKQAGPDGERLRIKSPELFDSALKHCTNCKRCEVACPSGVRIGDIIAKAKHQYSGFKPGLREFVLSHTDLMGSMSTLMAPVVNFTTGLKPMKLVLDKALGVSSHRDLPKYSQGTFRGWYKKQKETQASFARQIAYFHGCYVNYNHPQLGKELVQVLNAMNIGVQLLEREKCCGVPLIANGFMDKAKQQAAFNIKQMENSLLGNEMPLLATSSTCGFTLRDEYPHLLEQDNHKVRDRISLVTRFLWNEFYKGNKPAMKPLNLHIAYHTPCHMEKMGGVIYTLELLRAIPGVKVTVLESQCCGIAGTYGFKSENYQTSQTIGEGLFDQINRLSPDLVITDCETCKWQIEMSTSFRCEHPIHLLAQALA
>NZ_CP044060.1|WP_150389007.1|663710_664976_-|glycerol-3-phosphate-dehydrogenase-subunit-GlpB
MKFDNIVIGGGMAGLSAALRLVEAGQKTLLMASGQSALHFSSGSVDLLESEGDPRAALPAFMAAHPDHPYSKVGMQNIEASLADLQRHCAEQGLPLVRQDTNHQRLTPIGTLKRTWLSPDTCACVTDAPIPDVLLLATLEGFRDFHPALAAANLATHPRFAHCRILTGEIRLPQLAEFSRNPHEFRSADIARLCDKHHLVADLAREISRMVQESGVPDCRHIVLPACLSLGLVGPRLAELEQRTDCTIKEVATMPPSLIGMRMQEALKRRFMALGGTFLTSERVLGARYEGDRVVGVHTQNGDDQLFEADNFVLASGSFFSRGLESRLRGIREPIFDADVLSMEERDAWAGRRLFDHHPFMGFGVKTDDKLRVLRGGKPLTNLYGAGSVLAHYDPIREGSGSGVAVATGWQAAGHILGAAQ
>NZ_CP044060.1|WP_150389008.1|664965_666639_-|anaerobic-glycerol-3-phosphate-dehydrogenase-subunit-A
MKRITTQVVIIGGGATGAGIMRDCALRGIDCILLERDDIAAGTTGRNHGLLHSGARYAVTDQESARECIQENRILKRIASHCVEDTGGLFLTLPEDDINFQTTFMDACALAGIETRQLDPGEALRMEPNANPAMIGAIHVPDGTVDPFRLAAANVLDAKEHGARIFTHSKVLGLLRTQDRVHGVKAINTRTGEAFEVECQEVINAAGIWGQQICEYADLGIRMFPAKGSLLIMDYRINQLVLNRARKPADADILVPGDTISLIGTTSSRIDYNKIDQLTVEPEEVEVLLREGIKLAPIMARTRLLRAYAGVRPLVAVDGDDTGRNISRGIVLLDHAERDGLKGFNTITGGKLMTYRLMAEWATDLLAKKLGNSKPCQTAELSLPGSRDPEKVSAPGLSVPVEGSAQYRHGERVIAFFRDNPKANALICECEMVTAGEIEYALRELDVDNLIDLRRRTRLGMGPCQGELCAYRAAGLMQEYGKADGRQACVMLRQFLEERYKGTRPVLWGDALREAEFTYWIYEGLFGLGEWTAPQLVADTPRDPTSETTHKESRHEV
>NZ_CP044060.1|WP_074045197.1|666881_667337_-|YchJ-family-protein
MNLCPCGSTLSLELCCGSRHSGAVADTPEQLMRSRYSAFVLGLGEYLVHSWHPAHLGGLTAEELSRIDTRWDGLEIIASQGGPEDETGMVEFKAWFLEGDERHCLHERSRFVRYQGRWVYTEGEQDPAPLKTGRNDPCPCGSGKKHKKCCG
>NZ_CP044060.1|WP_005352447.1|667460_669128_+|methyl-accepting-chemotaxis-protein
MTLKQKILLLGAVPVLLMALVVNLSNYMVSKRDLESDLVVARENAIKERKALLSSYIMMAKTAVDAVYSLPDSPENRQKVKELLRPLRYSSDGYFFVYDFEGNTILLPVRTELEGKNRWNDKDAKGKLLIQEILKSARQGDGFTEYWTAKPSIGRDAPKLAFTLVLDKYQWAIGTGFYIDDIDNELAALRAERESNMHASLQSSVLVILLILGITLAATVIVGNRVTKPLADAVLALNDIANGDGDLTQRLKVQSQDEIGQLASAFNRFVERIQSVVSQVGETSNHLFSAVDKLHHLSEHYDHQMQGHSRETDQVVTAVTEMSSTAQEVAASASNAATATSDAARESDAARGVVSGAINSINRLVGEVHTASGVIEQLAQETAKIGSVVEVIRGIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRSLAGRTQQSTKEINEMLQRLQGGVKQAVEVMQASEDRSQETVQEASHIASSLDSMVMAVSTINDMNIQIATAAEEQHAVSEEINKNLVAIQQIVSELTSAAVESNSTTRDLASTGDKLRKLVSQFRY
>NZ_CP044060.1|WP_005333476.1|669260_670472_+|ROK-family-transcriptional-regulator
MNEIVKGSIDLIRQLNYGLVYASLEEHKELSRTDLSRLTGLSPASITKITRELLDGGLVVTCGESSVGRGRRQTLLRINERRFQFLSMRLGRGYVDMALFDFSGRSLARQRHLFTEEERADLLGSLVHAIKVFLPRKSLSLACIALCLPGQVERHSGMVKHFPFYDLRNWPLGPTLQQAFSVPVLVSGDVRTWIQAEREWGAAKNCADAVLVFVHNDIGVGMVVNGQLIESENALLGDLSHLQLEPYGQRCYCGGFGCACTLVTNQALEAQYRDLRERMQEHDLPESVTIRELCELALAGNSLCQDILHQAAGRLSKVLSNLICLLNPGKLLLGGEITRADRLLFPMLHQSLASQLPAEYLVRLQIESTHFYEDPTKPTSVQVHKALRDGSLLLELLRSCQES

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Crispr_ID: NZ_CP044060_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP044060_2

1857494-1857625

Orphan

Consensus_repeat	Method
TGCAGCAACCCGAGCTCGCCCCCAACCGCCATATCATCACC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP044060_2

>merge|NZ_CP044060|2|1857494-1857625|CRISPRCasFinder
TGCAGCAACCCGAGCTCGCCCCCAACCGCCATATCATCACCCCCAATCTGCAAAAGCGGGAGTCGGCTTGAGCTGGCAAGGCTGACCCATCTGCAGCAACCCGAGCTCACCCCCAACCGCCATATCATCACC

>NZ_CP044060|2|2|1857494-1857625|CRISPRCasFinder
TGCAGCAACCCGAGCTCGCCCCCAACCGCCATATCATCACC	CCCAATCTGCAAAAGCGGGAGTCGGCTTGAGCTGGCAAGGCTGACCCATC
TGCAGCAACCCGAGCTCACCCCCAACCGCCATATCATCACC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP044060.1\|WP_150389444.1\|1843018_1843573_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP044060.1\|WP_064340954.1\|1859266_1859731_+\|MerR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|133413
NZ_CP044060.1\|WP_150389451.1\|1861182_1861878_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP044060.1\|WP_005353557.1\|1845980_1848320_+\|acyl-CoA-dehydrogenase	unknown	unknown	gnl\|CDD\|237277
NZ_CP044060.1\|WP_150389443.1\|1842693_1842900_-\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|238045
NZ_CP044060.1\|WP_150389446.1\|1851564_1852614_+\|efflux-RND-transporter-periplasmic-adaptor-subunit	unknown	unknown	gnl\|CDD\|273776
NZ_CP044060.1\|WP_064340951.1\|1862562_1862793_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP044060.1\|WP_005353600.1\|1863851_1864193_-\|carboxymuconolactone-decarboxylase-family-protein	unknown	unknown	gnl\|CDD\|367130
NZ_CP044060.1\|WP_150389452.1\|1862035_1862551_+\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|181235
NZ_CP044060.1\|WP_005334596.1\|1862868_1863360_-\|DNA-starvation/stationary-phase-protection-protein	unknown	unknown	gnl\|CDD\|223854
NZ_CP044060.1\|WP_088869562.1\|1844070_1844811_-\|phosphatase	unknown	unknown	gnl\|CDD\|236429
NZ_CP044060.1\|WP_150389450.1\|1857800_1859045_-\|NADH:flavin-oxidoreductase/NADH-oxidase-family-protein	unknown	unknown	gnl\|CDD\|240084
NZ_CP044060.1\|WP_005334507.1\|1845278_1845932_+\|TetR/AcrR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|380065
NZ_CP044060.1\|WP_042082440.1\|1860409_1861126_+\|SIS-domain-containing-protein	unknown	unknown	gnl\|CDD\|179510
NZ_CP044060.1\|WP_150389445.1\|1848486_1851549_+\|MMPL-family-transporter	unknown	unknown	gnl\|CDD\|223911
NZ_CP044060.1\|WP_150389447.1\|1853394_1854585_-\|putative-C-S-lyase	unknown	unknown	gnl\|CDD\|224090
NZ_CP044060.1\|WP_005334512.1\|1852729_1853251_+\|crossover-junction-endodeoxyribonuclease-RuvC	unknown	unknown	gnl\|CDD\|234587
NZ_CP044060.1\|WP_150389448.1\|1854673_1856245_-\|PTS-maltose-transporter-subunit-IICB	unknown	unknown	gnl\|CDD\|182245
NZ_CP044060.1\|WP_150390544.1\|1863364_1863766_-\|PaaI-family-thioesterase	unknown	unknown	gnl\|CDD\|239527
NZ_CP044060.1\|WP_064340953.1\|1859826_1860090_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP044060.1\|WP_064340954.1\|1859266_1859731_+\|MerR-family-transcriptional-regulator	gnl\|CDD\|133413	cd04786, HTH_MerR-like_sg7, Helix-Turn-Helix DNA binding domain of putative transcription regulators from the MerR superfamily. Putative helix-turn-helix (HTH) MerR-like transcription regulators (subgroup 7) with a conserved cysteine present in the C-terminal portion of the protein. Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.	1.11042e-75
NZ_CP044060.1\|WP_005353557.1\|1845980_1848320_+\|acyl-CoA-dehydrogenase	gnl\|CDD\|237277	PRK13026, PRK13026, acyl-CoA dehydrogenase; Reviewed.	0
NZ_CP044060.1\|WP_150389443.1\|1842693_1842900_-\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|238045	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators.	4.7329e-14
NZ_CP044060.1\|WP_150389446.1\|1851564_1852614_+\|efflux-RND-transporter-periplasmic-adaptor-subunit	gnl\|CDD\|273776	TIGR01730, COG0845:_Membrane-fusion_protein, RND family efflux transporter, MFP subunit. This model represents the MFP (membrane fusion protein) component of the RND family of transporters. RND refers to Resistance, Nodulation, and cell Division. It is, in part, a subfamily of pfam00529 (Pfam release 7.5) but hits substantial numbers of proteins missed by that model. The related HlyD secretion protein, for which pfam00529 is named, is outside the scope of this model. Attributed functions imply outward transport. These functions include nodulation, acriflavin resistance, heavy metal efflux, and multidrug resistance proteins. Most members of this family are found in Gram-negative bacteria. The proposed function of MFP proteins is to bring the inner and outer membranes together and enable transport to the outside of the outer membrane. Note, however, that a few members of this family are found in Gram-positive bacteria, where there is no outer membrane. [Transport and binding proteins, Unknown substrate].	1.33865e-45
NZ_CP044060.1\|WP_005353600.1\|1863851_1864193_-\|carboxymuconolactone-decarboxylase-family-protein	gnl\|CDD\|367130	pfam02627, CMD, Carboxymuconolactone decarboxylase family. Carboxymuconolactone decarboxylase (CMD) EC:4.1.1.44 is involved in protocatechuate catabolism. In some bacteria a gene fusion event leads to expression of CMD with a hydrolase involved in the same pathway. In these bifunctional proteins CMD represents the C-terminal domain, pfam00561 represents the N-terminal domain.	7.25789e-15
NZ_CP044060.1\|WP_150389452.1\|1862035_1862551_+\|AAA-family-ATPase	gnl\|CDD\|181235	PRK08118, PRK08118, DNA topology modulation protein.	7.54902e-20
NZ_CP044060.1\|WP_005334596.1\|1862868_1863360_-\|DNA-starvation/stationary-phase-protection-protein	gnl\|CDD\|223854	COG0783, Dps, DNA-binding ferritin-like protein (oxidative damage protectant) [Inorganic ion transport and metabolism].	5.85112e-63
NZ_CP044060.1\|WP_088869562.1\|1844070_1844811_-\|phosphatase	gnl\|CDD\|236429	PRK09248, PRK09248, putative hydrolase; Validated.	1.1724e-160
NZ_CP044060.1\|WP_150389450.1\|1857800_1859045_-\|NADH:flavin-oxidoreductase/NADH-oxidase-family-protein	gnl\|CDD\|240084	cd04733, OYE_like_2_FMN, Old yellow enzyme (OYE)-related FMN binding domain, group 2. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.	1.14827e-176
NZ_CP044060.1\|WP_005334507.1\|1845278_1845932_+\|TetR/AcrR-family-transcriptional-regulator	gnl\|CDD\|380065	pfam17939, TetR_C_30, Tetracyclin repressor-like, C-terminal domain. TetR family regulators are involved in the transcriptional control of multidrug efflux pumps, pathways for the biosynthesis of antibiotics, response to osmotic stress and toxic chemicals, control of catabolic pathways, differentiation processes, and pathogenicity. The TetR proteins identified in overm ultiple genera of bacteria and archaea share a common helix-turn-helix (HTH) structure in their DNA-binding domain. However, TetR proteins can work in different ways: they can bind a target operator directly to exert their effect (e.g. TetR binds Tet(A) gene to repress it in the absence of tetracycline), or they can be involved in complex regulatory cascades in which the TetR protein can either be modulated by another regulator or TetR can trigger the cellular response. TetR regulates the expression of the membrane-associated tetracycline resistance protein, TetA, which exports the tetracycline antibiotic out of the cell before it can attach to the ribosomes and inhibit protein synthesis. TetR blocks transcription from the genes encoding both TetA and TetR in the absence of antibiotic. The C-terminal domain is multi-helical and is interlocked in the homodimer with the helix-turn-helix (HTH) DNA-binding domain. This entry represents the C-terminal domain present in the Pseudomonas aeruginosa PsrA which regulates the fadBA5 beta-oxidation operon. Functional analysis of PsrA indicated its importance in regulating b-oxidative enzymes. It has also been suggested that PsrA, a member of the TetR family of repressors, could affect global gene expression including activation of rpoS.	7.58815e-31
NZ_CP044060.1\|WP_042082440.1\|1860409_1861126_+\|SIS-domain-containing-protein	gnl\|CDD\|179510	PRK02947, PRK02947, sugar isomerase domain-containing protein.	3.54686e-83
NZ_CP044060.1\|WP_150389445.1\|1848486_1851549_+\|MMPL-family-transporter	gnl\|CDD\|223911	COG0841, AcrB, Cation/multidrug efflux pump [Defense mechanisms].	0
NZ_CP044060.1\|WP_150389447.1\|1853394_1854585_-\|putative-C-S-lyase	gnl\|CDD\|224090	COG1168, MalY, Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities [Amino acid transport and metabolism].	9.21988e-155
NZ_CP044060.1\|WP_005334512.1\|1852729_1853251_+\|crossover-junction-endodeoxyribonuclease-RuvC	gnl\|CDD\|234587	PRK00039, ruvC, Holliday junction resolvase; Reviewed.	3.48839e-91
NZ_CP044060.1\|WP_150389448.1\|1854673_1856245_-\|PTS-maltose-transporter-subunit-IICB	gnl\|CDD\|182245	PRK10110, PRK10110, PTS maltose transporter subunit IICB.	0
NZ_CP044060.1\|WP_150390544.1\|1863364_1863766_-\|PaaI-family-thioesterase	gnl\|CDD\|239527	cd03443, PaaI_thioesterase, PaaI_thioesterase is a tetrameric acyl-CoA thioesterase with a hot dog fold and one of several proteins responsible for phenylacetic acid (PA) degradation in bacteria. Although orthologs of PaaI exist in archaea and eukaryotes, their function has not been determined. Sequence similarity between PaaI, E. coli medium chain acyl-CoA thioesterase II, and human thioesterase III suggests they all belong to the same thioesterase superfamily. The conserved fold present in these thioesterases is referred to as an asymmetric hot dog fold, similar to those of 4-hydroxybenzoyl-CoA thioesterase (4HBT) and the beta-hydroxydecanoyl-ACP dehydratases (FabA/FabZ).	5.02205e-11

>NZ_CP044060.1|WP_150389448.1|1854673_1856245_-|PTS-maltose-transporter-subunit-IICB
MAKPQAKSTIWEFLQSLGKTFMLPVALLAFSGILLGVGSSLTSDAVKQSMPFLDNTVLQLLFLWMTKVGLVAFIYLPVMFAVAIPLGLAREEKGVAAFAGFVGYAALNLSINFYLTVANVIGDGAAEKAYGVKSILGISSIDTGILGAIIVGVIVAKLHARFYTYKMPDALAFFGGARFVPIITVLVLGVVGLVVPFAWPWFAAGINGIGALISHAGPFGPFLFGTGERLLLPLGLHHILVALIRFTEAGGTQLVCGHEVSGALNIFYAELSCADTTGFSVSATSFLSQGKMPAFLGGLPGAALAMYHCARPENRGKIKALLVSGVVACVIGGITEPLEFLFLFVAPVLYVIHAILTGLGFMTMGLLGVTIGNTDGNLIDFLVFGVLQGTATKWYLVPVAAAIWFAIYYSVFRFAIVRFNLKTPGREIETSETAQPAGKKAGNSGYNGEIILNALGGADNILALDNCITRLRMSVQDMSRVDDKVLKANGAIGVIKLDEHNLQVVIGPQVHLVKNQLQSLMGA
>NZ_CP044060.1|WP_150389447.1|1853394_1854585_-|putative-C-S-lyase
MHDIYNFDHVVDRHGTYCTQWDYVADRFGHADLLPFTISDMDFETAPCIRQTLATRLEHGVFGYSRWNHDDFKGAVSNWFASRYGATLDPDMLVYGPSVIYVIAQLVSLWSAPGEGVLVHTPAYDAFGNMLAANDRVLLPCPLKKTEGSYQIDWACFEQQAARPDCRILLLCSPHNPTGRVWTRDELGRMAAICQRHGVKVISDDIHMDVSFSPYQPWSEVAQDDHWALVSSGSKSFNIPALGGAYAFIANAAARAAYLQRLKAAHGLSSPPILGVLAHISAYRDGAAWLDALKSYLHGSLTHVAARLNAAFPAIDYRVPEGTYLAWIDLRGLGIDSTERMDTLQALLVEKYRVAIMRGDTYGPEGTGYIRLNVGCSRSKVDQGLDALISALGEVV
>NZ_CP044060.1|WP_005334512.1|1852729_1853251_+|crossover-junction-endodeoxyribonuclease-RuvC
MSIILGIDPGSRITGYGVIRVVGGKAEYLGSGCIRTDCGELPERLKQVYDGVCEIITQFKPTEFAIERVFMARNADSALKLGQARGSAIVAAVNAYLPVSEYSATQIKQAVVGTGGAAKEQVQHMVTHLLKLSATPQADAADALGVALCHLHTRQSLIKMAGRASSSVRGRYR
>NZ_CP044060.1|WP_150389446.1|1851564_1852614_+|efflux-RND-transporter-periplasmic-adaptor-subunit
MTHMITRMLAGAVLIAGSVLPVLADQGKMVTLADVTQGDAAANIWVSGTVASRQQAALSAEVSGRVEWIAEFGSRVKKGDELLRLDSAALRLSLDQARAEQAKWQSNLRFARAESQRITRLHQQKSASQSQYDKASYDVEQAALAERLAAIQVNQIEEQLRRSHIYAPFDGVVNNHFIQPGEHVDAGEQALELVNPDQPDIRLQAPILWAQQLAPQTRLRVEGEQLSGHGVYYQRAASADPKSRLIELRLKPEAGTFIIGSPVRVALPLGDQQSMLLPRDALVLGTDGSVVYQVAQSGKALKVNRVPVTVLFGDSQQVAVSGALKQGDRVVVRGAGSLQDGDTIALFKG
>NZ_CP044060.1|WP_150389445.1|1848486_1851549_+|MMPL-family-transporter
MNLAKTAIERPIWVAVSIVLIFLLGLLSIRGLPIQLFPDIDRPHLNISVSWRSASPQEMESEITDPIEQEMQGVQGLKSLVSNSYPGFTEIDMEFALGTDMQRAQLDVISRLNRVSGLPDKIGGPYVNNYSSNDTLTFFFIQQLPGAQGVIDDHQALIEARVKPELERIEGVSTVAVEGINERQIQIRFDPYRAAELGVEIPVLASRATTGWDVSAGTLDIGRWEYKLRFAGRYDVETLGDKVVDWRDGLPIYLRDVAEVRVAREENPVLRIQNGNTAIAAQIFKESGANALASLEAIKARVNELNREVLEPVGLHMEQSFDASLYINRAVSMVTANLGLGVLLSCAILWLFLRQLKATLMIALAIPISIMLTFCLLKVMDRTLNIISLAGIAFAVGMVLDAAIVVLESIYRRHERGDLSKAEAALEGTRQVWTALVASTLTTVAIFLPVLLLNDVEGQLFADLALTIACAVTVSMLVAVIVLPAVAARWMGHETLTDPYESLWQHTTRHVIRWTSTSRQRWTVITLMMSLPALATWALLPKMDYLPDVKRDAVDVWMNFTPGVNLKAQREEVIDTLIARLAPYMKGEKEPALKNYYILRYPGGAQIGVRPKDENRIKELESLLMKQLLVGIPDTRVFGGQGSLFGGFDSENGVSLLLQGGNLPELYQAARASMGILSKDLPGAQIRPEPSLDFTAPELKLVPQDRRLAEVGWDRTPLPTIIQTFGDGLRVGEYFDGEDRLDIMLMGQSSANPDELKAVPLATPSGRIVPLGELLRVEHDMGPASIFRADGRRSIILQIAPPAGMTMEQVIDTLKNRSFAAIRPLLPAGGELRIAGNADSLQQALDNLGTIFLFAVVILLVLLWGVFASIKDALLVLLTLPLASVGGVLALQLSGLLVPLPMDLLTIIGFVILLGLVVNNAILLVHQTRTAERDGMSRQLAVADALQSRMRPIAMTSLTSIFGMLPLMLSPSEGSEIYRGLATVIVGGMSCSTLFTLILLPAFLRLGEQVAIPQPLRQRA
>NZ_CP044060.1|WP_005353557.1|1845980_1848320_+|acyl-CoA-dehydrogenase
MITLLVLLVLAIAVVLGVPSIRKKVVTRPVFGIFKKILPPLSATEREAMEAGSVWWDGELFRGNPDWKKLHGYGKAELTAEEQAFIDNQVETLLAMVDDFKIVNETKDLPEPVWDYLKKEGFFSLIIPKSYGGREFSAIANSTIVTRIATKSLSVAVTVMVPNSLGPGELLMHYGTQAQKDFWLPGLANGKEVPCFALTGPEAGSDAGAIPDKGIVCKGMHKGEEVLGIRLNWNKRYITLAPRATVLGLAFKLYDPEKLLGDKEELGITCALIPTSHPGVRVGDRHYPMGLAFLNGPTFGKDVFIPLDWIIGGPDYAGRGWRMLVECLSAGRGISLPALGTACGHMASRTVGAYSYVRKQFGMSIGKFEGVQEALARIGGLTYQLEGARRMTAGSLDLGQAPAIVTAISKYHMTEMARQIMDDSMDIHAGRAIQLGPKNYTGYAYMGIPVAITVEGANILTRNLMIFGQGATRCHPYVFAELEAAADTDVERGLEKFDALLMKHIAFGAGNFFGSLFQGLTLGQFNSAPVAGETARYYKQLSRMSKGLALCADVSMLMLGGDLKRKEMISARLGDVLSHLYLASATLKHYEDQGRMVSDLPFVQYAVERNLYLIGKAFEGFFQNFPNKVVGAVLKRVVFPFGVGYKMPADDRCHAICLAMMKPGEFRDRLTALCYVGKDEADPVGLMERAFQAMVAVQPYEKKLVQAQKEGKLPRKLALPELVAAALAGSILSKDEADKLLAADALRYEAIQVDNFAPGELEGFSQQANKQPNKVEHAA
>NZ_CP044060.1|WP_005334507.1|1845278_1845932_+|TetR/AcrR-family-transcriptional-regulator
MSKIDTKNRILDAAEVLFAERGFADTSLRLITSEADVNLASVNYHFGSKKELIQAVLDRYLSLFMPDLDARLRVLMEQEQLTLLQLFESFVEPLMKLSAVRANGPAIFMQLLGRGYIDSQGHLRRFITAHYGPILQRITQAISKANPALSPADLFWRLHFTLGTVVFTMASADALRDIALADFGQQLDVEGLVRNVIPYLASGVGAPVESTRLSLAV
>NZ_CP044060.1|WP_088869562.1|1844070_1844811_-|phosphatase
MKYPVDTHTHTIASTHAYSTIHDYLPIARAKGIKLFATTDHGPEMADAPHVWHFANLPILPRVVDGVGILRGIEANIKNLEGEIDFPERYESRLDMIMAGFHEQVFPPCDQATHTQAMINAIKSGRVDMISHPGNPSFPIDIQAVVKAAADYRVALEINNSSFIHSRPGSEGNCRAIVEAARDLGAYLTFGSDSHVAFTLGDFDHCHRLVTEAGFPQERILVRSPRALLEFLESRGRAHIPEFVDL
>NZ_CP044060.1|WP_150389444.1|1843018_1843573_+|hypothetical-protein
MGSQTVWLPTALYTALIRMQLNDFTAQECVIAVFGDKIERLSQQRRYGLIYRNLNKLVDIGILDKRNVGNKCLRPNYIKTAMFEEVTFQEYLLDPEIPVTQVEKKAVVEVRNEGLRELEARARTYRLELQEYQATFAEYCELRTDFPALETTIDNVLRHTCQEFRFLRGRLAAVEEVMRALGRS
>NZ_CP044060.1|WP_150389443.1|1842693_1842900_-|helix-turn-helix-domain-containing-protein
MQDLAKKFGNTIRERRLRLGVSQDALALMTDIDRSYVGRIERGEVNVTLEKAYKIAQALDCDIQDLLP
>NZ_CP044060.1|WP_150389450.1|1857800_1859045_-|NADH:flavin-oxidoreductase/NADH-oxidase-family-protein
MNPFTPLTLPNGSQLINRLAKAAMEENMADRDHAPSEALIRLYRTWAEGGAGLIITGNVMVDGHAMTGAGGVVLDTPALSPQLAGRFRAWAEAAKSGGAQIWMQINHPGRQMPAALGQPTLAPSTVPMALGSFSKQFSPPRAMSEADIAEVKARFINTALLAQRLGFDGVQIHAAHGYLLSQFLSPLTNHRHDRWGGSLENRARLLLEIVQGIREQVGERFSLSVKLNSADFQRGGFSTEDARAVVDMLNPLGVDLVELSGGSYEAPAMHGQARDGRTLAREAYFLTFAEEIVGAAHMPVMVTGGIRRYPVVEQVLGSGVAVVGMATALAIAPDLPARWRREQAASAELRPISWRNKVLASVGYMAMVKYQLRRLGRGQPSHPKVAPSLALACQQWQTLLGNARYRRWIKAQEK
>NZ_CP044060.1|WP_064340954.1|1859266_1859731_+|MerR-family-transcriptional-regulator
MKIGELAKQTGMAASAIRFYEARGLLNKVQRGANGYRDYPPETVPLLTIISQAQQAGFSLDEIKQLVPADISTWQHAPLLAALKAKVSDIETLEARLAHSKQQLQTLIRLVESKPDEMPCEENAARVLASMGIPSHKHVAKAATTAKSASRHKR
>NZ_CP044060.1|WP_064340953.1|1859826_1860090_+|hypothetical-protein
MSHPHDQNPPTEIHRCDKCGERTRHIVVLVARDHTQDIMPKDPRKAFWQAFTSSSLTNAVFGQTLAYQATHVKHLICERCGEKFLEY
>NZ_CP044060.1|WP_042082440.1|1860409_1861126_+|SIS-domain-containing-protein
MFEYVEKLQARIATMVSQNEAGIRQAAHWFSEAIVHNKMIHMLGTGHSHMVGLEGFIRAGGLGNINAVLDSTVTTADGALRSSALEKLPGLAAILWEEQPIAPGDLMVVISNSGRNALPIEWAQLAKARGHKVIAITSVAQSAQNPSRHPSGQKLMELADLVLDNCVPPGDGLCEINDRVTGAFSSISGMVLINTLVVEAQKLALVQGVTPLIFSSQNVDGFNNDDVYRHFQGRLKSM
>NZ_CP044060.1|WP_150389451.1|1861182_1861878_+|hypothetical-protein
MADYINKNILSQAYIHVEPRGMETYEQLESFKENLRMFSLTRTEFFLSEGLEINVEFEDGSIKARVTVIGTLMLLLQGISSYKDFREGLQLLYSDAKWLSDAIISESLYQTKAKHHDVIRVEARTGIIGSIHKVFNKLDNIKRGAKGAMLATDIVDKIDDAQNEILKLMDNICDLADKDLVAKECIALVKELPETPVPPKDKENKFYAIDEYRRKKSNLIGEIEIHLMSDE
>NZ_CP044060.1|WP_150389452.1|1862035_1862551_+|AAA-family-ATPase
MKRILIIGNSGSGKSWLAAQLAEVLTIREVNLDTIVWQPGSFNQKRPQYEIDHAIQTLAQEPSWVVEGVFGALAEQLLDAADTLLFLDLDWSVCRDSLLSRGSQSARQRDTVAAEESFQQLLVWASEYGQRASKSSRHFHRELFDRFPNDKHRFTTRAEVNSYLTQLTVNS
>NZ_CP044060.1|WP_064340951.1|1862562_1862793_+|hypothetical-protein
MDQYKQTPKPDHMFFRKFISYLAITLPIGLIPEFIRQDFHLDLLSWQEGGRLTLIMIGVAAAMAGIDWLVYRYRTK
>NZ_CP044060.1|WP_005334596.1|1862868_1863360_-|DNA-starvation/stationary-phase-protection-protein
MKKESVVLPEMDIGISAADRKKIADGLSALLADSYTLYLMTHNFHWNVTGPQFNSLHNMFMDQYTEQWNALDVIAERIRALGFPAPGTYKEFVRLSSIEEVEGVPCASEMLKHLVLAQEATARTARKLFDLVDAVNDQPTADVLTQRIDIHEKTAWMLRSMLS
>NZ_CP044060.1|WP_150390544.1|1863364_1863766_-|PaaI-family-thioesterase
MMSHARCMVCGTHNPDSLGIRFYLGEGGTTEGLFIADQRHQGYSDILHGGMTSTLLDAVMTHALLQRGIRGLTAELTVRFIAPIDIGSKVALSARIVDQRHGIYRLNAVASVGGMIVAKASAKFIKPKANNRS
>NZ_CP044060.1|WP_005353600.1|1863851_1864193_-|carboxymuconolactone-decarboxylase-family-protein
MKNYREINKEQHQLGSAYRKSSPDTMNAFIALHKAVMKEDEALALKYREMIALGIGIASRCDGCIAAHVAGAVKAGASRAELIATVDVAVLMGGGPSIIYGTQAHAAIEELLS

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Crispr_ID: NZ_CP044060_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP044060_3

2042200-2042312

Orphan

Consensus_repeat	Method
GGGCCTGAAGCCAAGTTACTCCGTTGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP044060_3

>merge|NZ_CP044060|3|2042200-2042312|CRISPRCasFinder
GGGCCTGAAGCCAAGTTACTCCGTTGCAGCCGAGCGCTGCGGCCTGGATATTCTTCTGTTTCAACTCCAAGACATCCTTAATAAAAGGGCCTGAAGCCAAGTTACTCCGTTGC

>NZ_CP044060|3|3|2042200-2042312|CRISPRCasFinder
GGGCCTGAAGCCAAGTTACTCCGTTGC	AGCCGAGCGCTGCGGCCTGGATATTCTTCTGTTTCAACTCCAAGACATCCTTAATAAAA
GGGCCTGAAGCCAAGTTACTCCGTTGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP044060.1\|WP_150389494.1\|2044527_2045616_-\|peptide-chain-release-factor-1	unknown	unknown	gnl\|CDD\|234801
NZ_CP044060.1\|WP_005343846.1\|2048751_2049699_+\|ribose-phosphate-pyrophosphokinase	unknown	unknown	gnl\|CDD\|234929
NZ_CP044060.1\|WP_005334938.1\|2042361_2043162_-\|tetratricopeptide-repeat-protein	unknown	unknown	gnl\|CDD\|225464
NZ_CP044060.1\|WP_005353887.1\|2039742_2041023_-\|dicarboxylate/amino-acid:cation-symporter	unknown	unknown	gnl\|CDD\|234968
NZ_CP044060.1\|WP_110302562.1\|2033189_2033990_+\|AraC-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|197666
NZ_CP044060.1\|WP_110302563.1\|2034185_2036666_+\|alpha-glucosidase	unknown	unknown	gnl\|CDD\|236653
NZ_CP044060.1\|WP_118854714.1\|2043614_2044466_-\|peptide-chain-release-factor-N(5)-glutamine-methyltransferase	unknown	unknown	gnl\|CDD\|274634
NZ_CP044060.1\|WP_005353872.1\|2032641_2033178_+\|YbhB/YbcL-family-Raf-kinase-inhibitor-like-protein	unknown	unknown	gnl\|CDD\|176643
NZ_CP044060.1\|WP_005353907.1\|2047053_2047632_+\|outer-membrane-lipoprotein-LolB	unknown	unknown	gnl\|CDD\|377063
NZ_CP044060.1\|WP_110302565.1\|2038135_2038876_-\|transporter-substrate-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|270422
NZ_CP044060.1\|WP_150389495.1\|2049815_2051804_+\|bifunctional-metallophosphatase/5'-nucleotidase	unknown	unknown	gnl\|CDD\|277354
NZ_CP044060.1\|WP_058059203.1\|2052022_2052619_+\|aminoacyl-tRNA-hydrolase	unknown	unknown	gnl\|CDD\|235457
NZ_CP044060.1\|WP_005334936.1\|2039245_2039626_+\|autonomous-glycyl-radical-cofactor-GrcA	unknown	unknown	gnl\|CDD\|213978
NZ_CP044060.1\|WP_005362195.1\|2036766_2037318_-\|hemerythrin	unknown	unknown	gnl\|CDD\|226454
NZ_CP044060.1\|WP_042054540.1\|2047631_2048480_+\|4-(cytidine-5'-diphospho)-2-C-methyl-D-erythritol-kinase	unknown	unknown	gnl\|CDD\|234731
NZ_CP044060.1\|WP_005334937.1\|2041324_2042179_-\|3-deoxy-8-phosphooctulonate-synthase	unknown	unknown	gnl\|CDD\|235363
NZ_CP044060.1\|WP_005347796.1\|2031188_2032445_+\|adenylosuccinate-synthetase	unknown	unknown	gnl\|CDD\|197875
NZ_CP044060.1\|WP_139476479.1\|2045667_2046927_-\|glutamyl-tRNA-reductase	unknown	unknown	gnl\|CDD\|234592
NZ_CP044060.1\|WP_110302564.1\|2037388_2038066_-\|uracil-DNA-glycosylase	unknown	unknown	gnl\|CDD\|235376
NZ_CP044060.1\|WP_005334939.1\|2043174_2043558_-\|SirB2-family-protein	unknown	unknown	gnl\|CDD\|377264

Protein	Function_ID	Function_description	E-value
NZ_CP044060.1\|WP_150389494.1\|2044527_2045616_-\|peptide-chain-release-factor-1	gnl\|CDD\|234801	PRK00591, prfA, peptide chain release factor 1; Validated.	0
NZ_CP044060.1\|WP_005343846.1\|2048751_2049699_+\|ribose-phosphate-pyrophosphokinase	gnl\|CDD\|234929	PRK01259, PRK01259, ribose-phosphate diphosphokinase.	0
NZ_CP044060.1\|WP_005334938.1\|2042361_2043162_-\|tetratricopeptide-repeat-protein	gnl\|CDD\|225464	COG2912, COG2912, Uncharacterized conserved protein [Function unknown].	4.40346e-57
NZ_CP044060.1\|WP_005353887.1\|2039742_2041023_-\|dicarboxylate/amino-acid:cation-symporter	gnl\|CDD\|234968	PRK01663, PRK01663, C4-dicarboxylate transporter DctA; Reviewed.	0
NZ_CP044060.1\|WP_110302562.1\|2033189_2033990_+\|AraC-family-transcriptional-regulator	gnl\|CDD\|197666	smart00342, HTH_ARAC, helix_turn_helix, arabinose operon control protein.	4.4802e-21
NZ_CP044060.1\|WP_110302563.1\|2034185_2036666_+\|alpha-glucosidase	gnl\|CDD\|236653	PRK10137, PRK10137, alpha-glucosidase; Provisional.	0
NZ_CP044060.1\|WP_118854714.1\|2043614_2044466_-\|peptide-chain-release-factor-N(5)-glutamine-methyltransferase	gnl\|CDD\|274634	TIGR03534, RF_mod_PrmC, protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3. [Protein fate, Protein modification and repair].	2.80883e-125
NZ_CP044060.1\|WP_005353872.1\|2032641_2033178_+\|YbhB/YbcL-family-Raf-kinase-inhibitor-like-protein	gnl\|CDD\|176643	cd00865, PEBP_bact_arch, PhosphatidylEthanolamine-Binding Protein (PEBP) domain present in bacteria and archaea. PhosphatidylEthanolamine-Binding Proteins (PEBPs) are represented in all three major phylogenetic divisions (eukaryotes, bacteria, archaea). The members in this subgroup are present in bacterial and archaea. Members here include Escherichia coli YBHB and YBCL which are thought to regulate protein phosphorylation as well as Sulfolobus solfataricus SsCEI which inhibits serine proteases alpha-chymotrypsin and elastase. Although their overall structures are similar, the members of the PEBP family have very different substrates and oligomerization states (monomer/dimer/tetramer). In a few of the bacterial members present here the dimerization interface is proposed to form the ligand binding site, unlike in other PEBP members.	1.41607e-60
NZ_CP044060.1\|WP_005353907.1\|2047053_2047632_+\|outer-membrane-lipoprotein-LolB	gnl\|CDD\|377063	pfam03550, LolB, Outer membrane lipoprotein LolB.	8.25372e-57
NZ_CP044060.1\|WP_110302565.1\|2038135_2038876_-\|transporter-substrate-binding-domain-containing-protein	gnl\|CDD\|270422	cd13704, PBP2_HisK, The periplasmic sensor domain of histidine kinase receptors; the type 2 periplasmic binding fold protein. This subfamily includes the periplasmic sensor domain of the histidine kinase receptors (HisK) which are elements of the two-component signal transduction systems commonly found in bacteria and lower eukaryotes. Typically, the two-component system consists of a membrane-spanning histidine kinase sensor and a cytoplasmic response regulator. The two-component systems serve as a stimulus-response coupling mechanism to enable microorganisms to sense and respond to changes in environmental conditions. Extracellular stimuli such as small molecule ligands and ions are detected by the N-terminal periplasmic sensing domain of the sensor kinase receptor, which regulate the catalytic activity of the cytoplasmic kinase domain and promote ATP-dependent autophosphorylation of a conserved histidine residue. The phosphate is then transferred to a conserved aspartate in the response regulator through a phospho-transfer mechanism, and the activity of the response regulator is in turn regulated. The sensor domain belongs to the type 2 periplasmic-binding fold protein (PBP2) superfamily, whose members are involved in chemotaxis and uptake of nutrients and other small molecules from the extracellular space through their function as an initial high-affinity binding component. PBP2 typically comprises of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	2.19236e-22
NZ_CP044060.1\|WP_150389495.1\|2049815_2051804_+\|bifunctional-metallophosphatase/5'-nucleotidase	gnl\|CDD\|277354	cd07409, MPP_CD73_N, CD73 ecto-5'-nucleotidase and related proteins, N-terminal metallophosphatase domain. CD73 is a mammalian ecto-5'-nucleotidase expressed in endothelial cells and lymphocytes that catalyzes the conversion of 5'-AMP to adenosine in the final step of a pathway that generates adenosine from ATP. This pathway also includes a CD39 nucleoside triphosphate dephosphorylase that mediates the dephosphorylation of ATP to ADP and then to 5'-AMP. These enzymes all have an N-terminal metallophosphatase domain and a C-terminal 5'nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.	1.45016e-81
NZ_CP044060.1\|WP_058059203.1\|2052022_2052619_+\|aminoacyl-tRNA-hydrolase	gnl\|CDD\|235457	PRK05426, PRK05426, peptidyl-tRNA hydrolase; Provisional.	1.67432e-107
NZ_CP044060.1\|WP_005334936.1\|2039245_2039626_+\|autonomous-glycyl-radical-cofactor-GrcA	gnl\|CDD\|213978	TIGR04365, Autonomous_glycyl_radical_cofactor, autonomous glycyl radical cofactor GrcA. This small protein, previously designated YfiD in E. coli, is closely homologous to pyruvate formate_lyase (PFL) in a region surrounding the stable glycyl radical that is prepared by the action of pyruvate formate-lyase activase, a radical SAM enzyme. When damage at the site of this radical breaks the main chain of PFL, this protein acts as a spare part that reintroduces the needed stable glycyl radical. Cutoffs for this model are set to exclude a set of closely related phage proteins that appear to have a corresponding function.	6.45315e-80
NZ_CP044060.1\|WP_005362195.1\|2036766_2037318_-\|hemerythrin	gnl\|CDD\|226454	COG3945, COG3945, Uncharacterized conserved protein [Function unknown].	6.02121e-19
NZ_CP044060.1\|WP_042054540.1\|2047631_2048480_+\|4-(cytidine-5'-diphospho)-2-C-methyl-D-erythritol-kinase	gnl\|CDD\|234731	PRK00343, ipk, 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional.	0
NZ_CP044060.1\|WP_005334937.1\|2041324_2042179_-\|3-deoxy-8-phosphooctulonate-synthase	gnl\|CDD\|235363	PRK05198, PRK05198, 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional.	0
NZ_CP044060.1\|WP_005347796.1\|2031188_2032445_+\|adenylosuccinate-synthetase	gnl\|CDD\|197875	smart00788, Adenylsucc_synt, Adenylosuccinate synthetase. Adenylosuccinate synthetase plays an important role in purine biosynthesis, by catalyzing the GTP-dependent conversion of IMP and aspartic acid to AMP. Adenylosuccinate synthetase has been characterized from various sources ranging from Escherichia coli (gene purA) to vertebrate tissues. In vertebrates, two isozymes are present - one involved in purine biosynthesis and the other in the purine nucleotide cycle. The crystal structure of adenylosuccinate synthetase from E. coli reveals that the dominant structural element of each monomer of the homodimer is a central beta-sheet of 10 strands. The first nine strands of the sheet are mutually parallel with right-handed crossover connections between the strands. The 10th strand is antiparallel with respect to the first nine strands. In addition, the enzyme has two antiparallel beta-sheets, comprised of two strands and three strands each, 11 alpha-helices and two short 3/10-helices. Further, it has been suggested that the similarities in the GTP-binding domains of the synthetase and the p21ras protein are an example of convergent evolution of two distinct families of GTP-binding proteins. Structures of adenylosuccinate synthetase from Triticum aestivum and Arabidopsis thaliana when compared with the known structures from E. coli reveals that the overall fold is very similar to that of the E. coli protein.	2.59858e-174
NZ_CP044060.1\|WP_139476479.1\|2045667_2046927_-\|glutamyl-tRNA-reductase	gnl\|CDD\|234592	PRK00045, hemA, glutamyl-tRNA reductase; Reviewed.	0
NZ_CP044060.1\|WP_110302564.1\|2037388_2038066_-\|uracil-DNA-glycosylase	gnl\|CDD\|235376	PRK05254, PRK05254, uracil-DNA glycosylase; Provisional.	8.21742e-150
NZ_CP044060.1\|WP_005334939.1\|2043174_2043558_-\|SirB2-family-protein	gnl\|CDD\|377264	pfam04247, SirB, Invasion gene expression up-regulator, SirB. SirB up-regulates Salmonella typhimurium invasion gene transcription. It is, however, not essential for the expression of these genes. Its function is unknown.	4.4547e-21

>NZ_CP044060.1|WP_005334937.1|2041324_2042179_-|3-deoxy-8-phosphooctulonate-synthase
MEQKNIKINQIDVANDKPFVLFGGMNVLESRDMAMAVCEKYVEVTSKLGIPFVFKASWDKANRSSIHSYRGPGLEEGMKIFQELKATFGMPVISDLHEPHQAKPVAEVVDVIQLPAFLARQTDLVEAMARTGNVINIKKPQFLSPSQMKNITDKFEECGNDQLILCERGANFGYDNLVVDMLGLGVMKKSTGGYPVIFDVTHSLQCRDPLGAASGGRREQVTELARAGMAVGLAGLFIESHPDPKIARCDGPSALPLEKLEGFLKQMKAIDDLIKGFEPLDTSA
>NZ_CP044060.1|WP_005353887.1|2039742_2041023_-|dicarboxylate/amino-acid:cation-symporter
MRKKLFSSLYFQVLLAITLGVFLGHVYPELGADMKPLGDGFVKLIKMIIAPVIFCTVVTGIAGMESMKAVGKTGAIALLYFEVVSTIALIIGLCVVNLLQPGAGMNVDPAALDASAISAYAEQAKSQGIIAFLLDIIPGSVIGAFASGNILQVLLFAVLFGFSLHHIGEKGQVIFGVIDSFSKVIFGIINMIMRLAPVGAFGAMAFTIGKYGVGSLVQLGQLIACFYLTCLFFIFIVLGSIAKASGFSILRFISYIREELLIVLGTSSSESVLPRMLDKMEKLGCQKSVVGLVIPTGYSFNLDGTSIYLTMAAIFIAQATNTPLDLFQQITLLVVLLISSKGAAGVTGSGFIVLAATISAVGHLPLAGLALILGIDRFMSEARALTNLIGNGVATVVVAKYCKQLDEKKMDAVLGGKVGQLEADRA
>NZ_CP044060.1|WP_005334936.1|2039245_2039626_+|autonomous-glycyl-radical-cofactor-GrcA
MIKGIQITQAANTALLNSFWLLDEEKQQARCICVKGDAFAADQEVQLADLGQFEYRELPVQAEPAVEGGQHLNVNVLRRETLEDAIENPEKYPQLTIRVSGYAVRFNALTPEQQRDVVTRTFTQSL
>NZ_CP044060.1|WP_110302565.1|2038135_2038876_-|transporter-substrate-binding-domain-containing-protein
MNNGWRKWVWLALCCCWASSVAVRAETVRIAVGEWPPYISESLPNQGFLCEVVRQAFAEEGLDVSFHFYSWAEAYRLTLEGRYVVTMPWFRSREREQLFYLSASLGHFTTRLMTLTGTPAVNLGELKHEPVGVTRGYFYGDGFAARQAGLTLEWSDSDEESMGKLLDGRIHYLVMDEQVAQTLFQQALFRHPQSLSLTGAADPIWSQPGYLLMRKADPEARRLMLLFNTGLRKLERSGRLARLWKA
>NZ_CP044060.1|WP_110302564.1|2037388_2038066_-|uracil-DNA-glycosylase
MLTWSDVIGSEKEQDYFKSTLATVRAEREAGKVIYPPATDVFNAFKLTELDQVKVVILGQDPYHGPNQAHGLCFSVLPSVRTPPSLVNIYKEMQRDLPGFVTPNHGFLESWAKQGVLLLNTVLTVQAGQAHSHAHLGWETFTDRVIEQINASCQGVVFLLWGAHAQKKGRFIDRQRHYVLTAPHPSPLSAHRGFIGCGHFSETNRLLEQQGKSPIEWKSVCIPLD
>NZ_CP044060.1|WP_005362195.1|2036766_2037318_-|hemerythrin
MLSSLHKDHLNIARLLELLKHKLAAIRAEEPISYFLVRDVIDYLREVSDKYHHPKEDLIYDYYLKYRVVEGEVANRLQEEHVKLLEAGADLKEMVEMILMDAVIPLDQFTTKLERFVELQEAHMNYEEGVIFPHLRDSLTEDDWRHLEQNWQNRAIGDPLFGAEVSQHFQALAKRLSLPLTNG
>NZ_CP044060.1|WP_110302563.1|2034185_2036666_+|alpha-glucosidase
MFRKTLLSVALGTTLFGLTACNDNQTESSTVAKPEQAIQYKDVIDRRGTPTQFRDFDSYSNLKYNPLLDLGAWHGFLLPASDKEWGGFTGPMVISEEYSLFFASELDKLTLSDASGRPFPLTSARKQEVYAIPGALVQRFEFEPFTLELELRYGDARTALIRTRLINQTDTPLTLNLNWQGELLNQWDAKDTIASKYPGWTRTISESDKGIEFQFGKLRSTWNIMQSGSARYRIDRTLPSRTTLDQKTLGYQSDASITLAAKGSEDIFTLQSYLHSADDASRHQQSRQALLADPASYFADSIRRWEGYLANGLSNQGIPESERRIAVKAMETLNGNWRSPAGAILHDGVTPSNTARWFDGVWAWDSWKHAYAMAHFNPEVAKNNVRAMYDYQVQPDDPVRPQDAGMVIDAVFYNKLADRGGDGGNWNERDTKPPLSAWAIWEIYSATKDKAFIAEMYPKLQAYHDWWYRARDNNRNGIIEYGATKHVEHNDEYGNITFKVQYSNGIPAGLDLSSCTSEGDGWYACAGMPLYQQVLNVGGYSDMDIGAQHGAGWESGMDNAARFGFIEPGQLQRYADKTYGGDLAKARQDWNVAFFENHQDNGDLIGFSIDQESVELNAFLAKEKRILADMADLLGKPDDASRYRDGATQLAGYINSCMFDEASGFYYDRQIAQGDVADGNGCVGKLLTARGRGPEGWSPLWAEVADKEKAARVREVMLNAQEFNTKIPLGTAALTNPAYDPNIYWRGRVWLDQFYFGVRGLENYGYRSDAEALVNKLFNNAEGLAGSGPIRENYNPETGAMQGASNFSWSSAHLYMLYRNFLKPQA
>NZ_CP044060.1|WP_110302562.1|2033189_2033990_+|AraC-family-transcriptional-regulator
MSTPLLQQSHYLGIRQQPLHRVLIYAPTLIWVTQGSKQLWWRERRLSFDRERWLLIPAGHQLTFVNQPEQGKFRSHAITLLTPPPPEWLAESAPSHADLEEPAVKVTPGLAFCFELISTMAERGLSEATQAELLRGFYAELRAANALGLLFPASTMTLAERLARYLAVEPGINHTLEAVAPHFSMSRASMVRKLAAEGRSFRQLLAQVRMSHALNLLQQGLTPLEVALACGYDSPSRFAARFKQEFGLTPHQYLHTCPARLASNEK
>NZ_CP044060.1|WP_005353872.1|2032641_2033178_+|YbhB/YbcL-family-Raf-kinase-inhibitor-like-protein
MKLLKQSALLPLLCLTAMPAFAMTLKSTDIHEGQLMDKQFSFNGFGCSGDNHSPQLSWQDLPAGTKSVAITAYDPDAPTGSGWWHWLVVNLPATQSELASNASGKLKQGLEIRTDFGSQGYGGPCPPAGHGMHRYQFTAWALPHDLEVKADTPPAMVGYMLNSMALGKATLTATFVTP
>NZ_CP044060.1|WP_005347796.1|2031188_2032445_+|adenylosuccinate-synthetase
MSSIVVVGANWGDEGKGRIVDYLAGQAGASIRFQGGNNAGHTVVNDLGTFKLHQVPSGVFNPDCLVVLGPGMVISPEKLTVELEEVKASGVTPKLAISDRATLCLPLHALEDTLEEQRLGDGAYGSTRQGIAPAYGDRVMKKAILVGWLKQPDVLVERIQFMLDWKLPQMKAIYPSFEFTQTAQEMADWLLEVSAPWIDAVCNVSMPLKALQAEGKTLLFEAQLGAGRDLIYGEYPWVTSSHVSGAYAGIGGGLPGLRPERVIAVAKAFSSSVGTGTLLTAMENQDEFRKITNEFGATTGRPRDVGYFDAVATKNGVELQAATEVALTKLDCLTGLPDLKICVAYEGAHTENPIWPQTAALKPVYEQMESWSEDITGCRTFEELPRAAQQYVLRIEELLGVPVPMVSVGPGRDEMILR
>NZ_CP044060.1|WP_005334938.1|2042361_2043162_-|tetratricopeptide-repeat-protein
MLHIDEWTDFEAHDITELALSVSDEIYGSVEEGMRELNLLDEWLDEQIEEGTCDEVRQQLLQGFYHSLGFHGDWQDYFSANNCDLNQVLVQRKGIPVSLGILIIQLGRKLGLDVEGICFPGHFLVSFAGGEGEVYVDPFTGDELSLARIELLLRGALGDLATLTPDYLQPSGQWEIIERLLNVSKGALLREDRMPEALRCSELLLRMKPGDPLETRDRGFIYEQLDCPRQAADDFEYFIEQCPDDPVADVLKVQLAALDLSPKPLH
>NZ_CP044060.1|WP_005334939.1|2043174_2043558_-|SirB2-family-protein
MVFVLKHLHLTLIAGAVLMFMLRFYWVQTATGRAYSAPVMKVSGWLNGLVVLSGVLLCMVLDLNPLNNGTPWLSEKLMAILVLVFLAAMALRLAKSNLVRWCSFLGALGWIYFIAKLAVLKQTSVFG
>NZ_CP044060.1|WP_118854714.1|2043614_2044466_-|peptide-chain-release-factor-N(5)-glutamine-methyltransferase
MQIQQARAHIMTVLAEGESPRADADVLLCHLLGCRRSYLMTWPERELDAAQQATLQTWLARRLNGEPIAHLVGEREFWSLPLKVSPATLIPRPDTEVLVEQALTRIPQGPCAVLDLGTGTGAIALALKSERPEVDVWAVDRMADAAALARENSAALGLPIEVRDGSWFEPLGEPDRDNTPRFAVIVSNPPYIDGADPHLEQGDVRFEPRSALVADDAGLADIRHIVAHAPAYLLTDGWLLLEHGWDQGEAVRQLLRDGGYREVATVRDYGDNDRVTLGLCPLR
>NZ_CP044060.1|WP_150389494.1|2044527_2045616_-|peptide-chain-release-factor-1
MNPSLIRKLEGLIERHEEVQAMLGEPDVVSDQDRYRALTREYAQLEDIVHAFQRYRQAQDDLETTQMMLEEEDADLREMAQEELPLAKANLEALEQELQLMLLPKDPKDDNNCYLEIRAGAGGDEAAIFAGDLFRMYSRFAERQGWRVSIVSCNDGEYGGYKEVIAKIEGERVYGRLKFESGGHRVQRVPETESQGRVHTSACTVAVLPEVPEAEQIEINPSDLKIDTFRASGAGGQHVNKTDSAIRITHLPTGLVVECQDERSQHKNRAKAMSVLSARLQAAEDERHRAAEQSTRRNLVGSGDRSERIRTYNYPQGRLSEHRINLTLYRLSEILEGDLDCVITPLVQEYQADQLASLAENN
>NZ_CP044060.1|WP_139476479.1|2045667_2046927_-|glutamyl-tRNA-reductase
MSLLALGINHNTASVALRERVAFGPDCIDRALRELVSQPGVSEAVIVSTCNRTELYCNLEEARQEQVLRWLQQFHGLDAAELVTAIYQHHDEEAVRHLMRVACGLDSLVLGEPQILGQIKQSYAHAQQAESVKGALERLFQKSFSVAKRVRTDTEIGASAVSVAFAAVSLGRRIFSDLSQTKVLLVGAGETIELVARHLREQNVTKMMVANRTLQRAQTLAAEFGAQVMTLEEIPDYLHEADIVISSTASPLPIIGKGMVERALKARRFKPMFLVDIAVPRDIEAEVDELSDAYLYTVDDLQGIIEQNLETRKRAAAQAEVIVQEERDEFMGWYRGQSSVDLIRDYRHQSQQVADEELQRALLALAQGESAEQALKAMAHRLTNKLIHAPTQALRQAASQGDQSELSRLRQALGLSQEP
>NZ_CP044060.1|WP_005353907.1|2047053_2047632_+|outer-membrane-lipoprotein-LolB
MLLRIFTLTCLLLLAGCATTQPQRDQVNWNQERTRLEQLTHWQLSGKMAIITPQQKGSARLNWQQDGEDYRLNLTSLIGTSILELSRSKGEITLLDSDGNRHQSQDAEALIYQLTGWNIPVAGLPEWIKGLPGQAEFELNPDSSLASVRDGQWQIVYGDYRDQDGYRLPHQLTMTGQNSRLKLQINQWTLAR
>NZ_CP044060.1|WP_042054540.1|2047631_2048480_+|4-(cytidine-5'-diphospho)-2-C-methyl-D-erythritol-kinase
MASTRWPAPAKLNLFLHVNGRRPDGYHELQTLFIFLNHSDWLEFEVIPNSDTLTLSPAIPGVPDEQNLIIRAARLLQATLPSPQGAHIRLEKVLPMGGGIGGGSSDAATTLVALNHLWQAGLSEDELAALGVQLGADVPVFVRGKAAFAEGVGERLQPVELPDAWYLVLKPDCHVATAAVFQDPDLPRATPKMALDNLLEGEWKNDCESLVKKRHPEVANALGWLLEYAPSRMTGTGACVFAQFEDEVTAREVLACVPKGLDGFVAKGENISPLFSTLQQFK
>NZ_CP044060.1|WP_005343846.1|2048751_2049699_+|ribose-phosphate-pyrophosphokinase
MPDMKLFAGNATPELAQKIADRLFIKLGNAAVGRFSDGEISVQINENVRGGDIFIIQSTCAPTNDNLMELIVMVDALRRASAGRITAVIPYFGYARQDRRVRSARVPITAKVVADFLSSVGVDRVLTVDLHAEQIQGFFDVPVDNVFGSPVLLEDMKSKNLESPVVVSPDIGGVVRARAIAKLLDDTDIAIIDKRRPRPNVSQVMHLIGDVAGRDCIIVDDMIDTGGTLCKAAEALKERGAKRVFAYATHPVFSGSAVENIKNSVIDELIITDSIPLTAEMKAVGKVKQLTLSTVLAEAIRRISNEESISAMFEH
>NZ_CP044060.1|WP_150389495.1|2049815_2051804_+|bifunctional-metallophosphatase/5'-nucleotidase
MNCLRPLLLATLTSALFACQPAKENPPFVLTLAHMNDTHSQFDPVNAEIKGQIFAQQGETDTLYTRFGGYPRLLTMAKAYQAEALAKNQPLLLLHGGDAWQGSGYFKLNEGMANAELLSQFGLDAMALGNHEFDLDNQKLARFIEGVNFPVLAANLDTKADPALSKADNLKPFVVYAFDGNQKSPVTDLDNLPQGKQLVAVIGLVLEDMGNIAPNVGKLRFGKEVASAQATVDMLQAKGIHQIVALTHIGNERDLALAAKVNGLDAIVGGHSHSLLGDFRNIGWGKTGDYAKLVTNPDGIGKTCVVQAGSYAQAIGLAQVTFDSQGQVTDCQGHNSLLASRDFFADAARKQALDDARSKEASQFVDNQPNLVTVDEDPRLRGIIDSHYKPALEKAYGPVIGTIPEQLQNARRPGDNGSDSHGSDVAPLVAEGEFYWANTPAVQALTGGPVDFSLVAVGGVRADLPAGEWREGDSALTLLPFKNQLSVLTLTGAEVRALLTETITATLPASAHAGKFPYGGHLRYTFQETDAGKAGTLTQLQRKTASGEWQDLVDSEHYRVVMNAYSANGNDGWQALANAQRQKSERVDIASINGKLTAFPVLKVAQNGELLSAVYAPGQPLDCKASGVDCGTDAASFVEYVRDARPTLTALDEEIVTLLRAK
>NZ_CP044060.1|WP_058059203.1|2052022_2052619_+|aminoacyl-tRNA-hydrolase
MTSEIKLIVGLGNPGPEYAKTRHNAGAWYVEQLARWHNVSLREEPKFFGHTARILVEGQDVRLLIPNTYMNLSGKAVAALARFYQIEPEAILVAHDELDLPPGIAKFKQGGGHGGHNGLKDIIAKMGNNNNFFRLRLGIGHPGSKEQVAGFVLTKAPSSEQNLIDAALDESLRATDILFKQDMTKAMNRLHSFKAEKG

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

363844 : 416855

Aeromonas_virus(21.21%)

protease,holin,terminase,plate,tail,lysis,head,capsid,integrase,portal

attL 379734:379755|attR 416856:416877

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_005337529.1\|363844_364327_+\|protease	serine protease inhibitor ecotin	NA	NA	NA	NA
WP_100646165.1\|364625_364997_+	DUF413 domain-containing protein	NA	NA	NA	NA
WP_005337525.1\|364996_365869_+	HTH-type transcriptional regulator HdfR	NA	NA	NA	NA
WP_139123806.1\|366106_366982_+	hypothetical protein	NA	NA	NA	NA
WP_150388867.1\|367127_368318_+	aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA
WP_005359699.1\|368424_368928_-	DUF2062 domain-containing protein	NA	NA	NA	NA
WP_005350890.1\|368921_369440_-	DUF2062 domain-containing protein	NA	NA	NA	NA
WP_150388868.1\|369467_371669_+	DNA internalization-related competence protein ComEC/Rec2	NA	NA	NA	NA
WP_005350892.1\|371773_373537_+	lipid A ABC transporter ATP-binding protein/permease MsbA	W8CYL7	Bacillus_phage	2.2e-56	30.7
WP_150388869.1\|373536_374532_+	tetraacyldisaccharide 4'-kinase	NA	NA	NA	NA
WP_005347033.1\|374653_374842_+	hypothetical protein	NA	NA	NA	NA
WP_150388870.1\|374838_375588_+	3-deoxy-manno-octulosonate cytidylyltransferase	NA	NA	NA	NA
WP_005337448.1\|375800_376445_+	UvrY/SirA/GacA family response regulator transcription factor	NA	NA	NA	NA
WP_150388871.1\|376572_378426_+	excinuclease ABC subunit UvrC	NA	NA	NA	NA
WP_031227442.1\|378625_379180_+	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA
379734:379755	attL	NA	NA	NA	NA
WP_150388872.1\|379757_380918_-	phage late control D family protein	A0A0M5M5V5	Salmonella_phage	1.5e-98	49.3
WP_150388873.1\|380917_381409_-\|tail	phage tail protein	Q9ZXJ9	Pseudomonas_virus	3.3e-31	47.9
WP_150388874.1\|381421_383857_-\|tail	phage tail tape measure protein	A0A2H4JE61	uncultured_Caudovirales_phage	3.2e-127	42.1
WP_019445431.1\|383853_383985_-\|tail	GpE family phage tail protein	NA	NA	NA	NA
WP_150388875.1\|383993_384278_-\|tail	phage tail assembly protein	R4JJY8	Burkholderia_phage	3.7e-19	56.6
WP_019445429.1\|384355_384874_-\|tail	phage major tail tube protein	E5G6P8	Salmonella_phage	3.4e-50	57.0
WP_150388876.1\|384883_386062_-\|tail	phage tail sheath protein	Q9ZXK4	Pseudomonas_virus	7.2e-133	59.8
WP_150388877.1\|386073_386283_+	hypothetical protein	NA	NA	NA	NA
WP_150388878.1\|386279_386696_-\|tail	tail fiber assembly protein	NA	NA	NA	NA
WP_150388879.1\|387937_389353_-\|tail	phage tail protein I	A4JWL7	Burkholderia_virus	2.1e-33	45.7
WP_108542405.1\|389352_389754_-	hypothetical protein	A0A0U1UNR7	Pseudomonas_phage	2.5e-29	51.9
WP_150388880.1\|389764_390646_-\|plate	baseplate assembly protein	A0A218M4K5	Erwinia_phage	4.2e-69	50.9
WP_150388881.1\|390642_391002_-\|plate	baseplate assembly protein	E5E3R0	Burkholderia_phage	6.0e-22	50.0
WP_150388882.1\|390998_391550_-\|plate	phage baseplate assembly protein V	F1BUP5	Erwinia_phage	4.0e-25	39.1
WP_150388883.1\|391690_392668_-	DUF4062 domain-containing protein	NA	NA	NA	NA
WP_150388884.1\|392812_393616_-	hypothetical protein	NA	NA	NA	NA
WP_150388885.1\|393681_394146_-	phage virion morphogenesis protein	A0A0M3UL83	Salmonella_phage	2.3e-21	43.7
WP_139746577.1\|394127_394598_-\|tail	phage tail protein	A0A077K8R3	Ralstonia_phage	9.9e-33	50.4
WP_150388886.1\|394705_395179_-\|lysis	phage lysis regulatory protein LysB	E5G6N2	Salmonella_phage	6.5e-08	35.1
WP_150388887.1\|395189_395990_-	DUF3380 domain-containing protein	A0A2H4JGJ9	uncultured_Caudovirales_phage	5.5e-68	53.9
WP_013723873.1\|395986_396328_-\|holin	phage holin family protein	NA	NA	NA	NA
WP_071911234.1\|396324_396696_-	hypothetical protein	NA	NA	NA	NA
WP_150388888.1\|396705_396936_-	conjugal transfer protein TraR	U3PFL5	Vibrio_phage	8.5e-06	39.1
WP_005352059.1\|396964_397168_-\|tail	tail protein X	A0A2H4J946	uncultured_Caudovirales_phage	6.8e-15	57.6
WP_150388889.1\|397167_397644_-\|head	head completion/stabilization protein	E5E3S2	Burkholderia_phage	6.5e-32	51.9
WP_150388890.1\|397752_398514_-\|terminase	terminase	A4PE31	Ralstonia_virus	2.6e-43	45.1
WP_110303011.1\|398523_399582_-\|capsid	phage major capsid protein, P2 family	A4JWP9	Burkholderia_virus	5.5e-108	57.4
WP_139746584.1\|399594_400398_-\|capsid	GPO family capsid scaffolding protein	F1BUR1	Erwinia_phage	2.8e-59	46.6
WP_150388891.1\|400547_402314_+\|terminase	terminase ATPase subunit family protein	A0A1S6KZW3	Salmonella_phage	3.3e-238	68.9
WP_150388892.1\|402313_403318_+\|portal	phage portal protein	A0A1S6KZW5	Salmonella_phage	5.3e-108	56.5
WP_111809542.1\|403705_404086_-	diacylglycerol kinase	NA	NA	NA	NA
WP_150388893.1\|404169_405795_-	MCR-3-related phosphoethanolamine--lipid A transferase	NA	NA	NA	NA
WP_150390505.1\|406153_406708_+	cytochrome B	NA	NA	NA	NA
WP_150388894.1\|407354_409664_-	replication endonuclease	A5X9G4	Aeromonas_virus	0.0e+00	72.2
WP_150388895.1\|409660_409918_-	hypothetical protein	NA	NA	NA	NA
WP_139411911.1\|409914_410226_-	hypothetical protein	A5X9G2	Aeromonas_virus	1.5e-29	65.7
WP_150388896.1\|410203_410404_-	hypothetical protein	NA	NA	NA	NA
WP_150388897.1\|410400_410607_-	hypothetical protein	A5X9G1	Aeromonas_virus	3.7e-16	66.7
WP_150388898.1\|410603_410804_-	hypothetical protein	A5X9G0	Aeromonas_virus	4.6e-08	50.8
WP_150388899.1\|410800_411061_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_058056131.1\|411063_411252_-	hypothetical protein	NA	NA	NA	NA
WP_058056132.1\|411317_411770_-	hypothetical protein	A5X9F8	Aeromonas_virus	5.4e-36	54.3
WP_005351998.1\|411819_412044_-	ogr/Delta-like zinc finger family protein	E5E3T8	Burkholderia_phage	1.1e-10	48.5
WP_150388900.1\|412052_412568_-	hypothetical protein	A5X9F7	Aeromonas_virus	3.2e-24	42.1
WP_041214936.1\|412601_412964_-	hypothetical protein	NA	NA	NA	NA
WP_150388901.1\|412974_413166_-	Cro/Cl family transcriptional regulator	NA	NA	NA	NA
WP_150390506.1\|413706_414129_+	S24 family peptidase	A0A1I9KG86	Aeromonas_phage	3.1e-38	57.3
WP_150388902.1\|414178_414490_+	hypothetical protein	NA	NA	NA	NA
WP_150388903.1\|414470_414731_-	hypothetical protein	NA	NA	NA	NA
WP_150388904.1\|414810_415737_+	hypothetical protein	NA	NA	NA	NA
WP_150388905.1\|415796_416855_+\|integrase	tyrosine-type recombinase/integrase	A5X9F3	Aeromonas_virus	1.4e-111	58.0
416856:416877	attR	NA	NA	NA	NA

DBSCAN-SWA_2

519294 : 529877

Bacillus_phage(42.86%)

tRNA,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_150388956.1\|519294_520620_-	two-component system sensor histidine kinase RstB	W8CYF6	Bacillus_phage	3.0e-18	24.6
WP_150388957.1\|520641_521352_-	two-component system response regulator RstA	W8CYM9	Bacillus_phage	4.2e-27	31.0
WP_005337113.1\|522202_523057_+	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	A0A249XZQ2	Enterococcus_phage	4.6e-28	32.9
WP_005300025.1\|523174_523393_-	cold shock-like protein CspD	A0A2H4N7Y6	Lake_Baikal_phage	1.2e-17	63.2
WP_005337111.1\|523622_523940_+\|protease	ATP-dependent Clp protease adapter ClpS	A0A1B1IT64	uncultured_Mediterranean_phage	1.4e-14	49.4
WP_005337110.1\|523999_526255_+\|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	A0A223W0B1	Agrobacterium_phage	2.7e-168	43.0
WP_005300033.1\|526323_526542_-	translation initiation factor IF-1	NA	NA	NA	NA
WP_005351203.1\|526610_527327_-	arginyltransferase	NA	NA	NA	NA
WP_064338142.1\|527323_528031_-\|tRNA	leucyl/phenylalanyl-tRNA--protein transferase	NA	NA	NA	NA
WP_064338141.1\|528050_528521_+	glycine zipper 2TM domain-containing protein	NA	NA	NA	NA
WP_064338140.1\|528629_529877_-	response regulator	A0A127AWB9	Bacillus_phage	2.5e-14	32.2

DBSCAN-SWA_3

2523948 : 2581125

Enterobacteria_phage(20.45%)

terminase,holin,plate,tail,tRNA,head,integrase,capsid,portal

attL 2535591:2535610|attR 2585758:2585777

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_123172343.1\|2523948_2525673_+\|tRNA	proline--tRNA ligase	NA	NA	NA	NA
WP_139461080.1\|2525763_2526444_-	SDR family NAD(P)-dependent oxidoreductase	A0A0K0KVL6	Prochlorococcus_phage	8.4e-09	26.8
WP_005335781.1\|2526475_2527108_-	TIGR04219 family outer membrane beta-barrel protein	NA	NA	NA	NA
WP_005335782.1\|2527203_2527653_-	copper chaperone PCu(A)C	NA	NA	NA	NA
WP_064341661.1\|2527743_2528493_+	enoyl-CoA hydratase	NA	NA	NA	NA
WP_005335785.1\|2528510_2528939_-	DUF2753 family protein	NA	NA	NA	NA
WP_150389637.1\|2529224_2529872_+	CatB-related O-acetyltransferase	NA	NA	NA	NA
WP_123172340.1\|2529966_2530674_-	chromosome partitioning protein ParB	NA	NA	NA	NA
WP_150389638.1\|2530858_2532463_+	oligopeptide ABC transporter substrate-binding protein OppA	NA	NA	NA	NA
WP_013723462.1\|2532581_2532881_+	hypothetical protein	NA	NA	NA	NA
WP_150389639.1\|2533018_2534578_+	PAS domain-containing protein	A0A1B0V854	Salmonella_phage	4.1e-35	56.2
WP_150389640.1\|2534641_2535694_-\|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	NA	NA	NA	NA
2535591:2535610	attL	NA	NA	NA	NA
WP_150389641.1\|2535784_2536870_+\|integrase	tyrosine-type recombinase/integrase	S5MDN5	Escherichia_phage	8.4e-144	67.7
WP_150389642.1\|2536866_2537175_-	hypothetical protein	NA	NA	NA	NA
WP_150389643.1\|2537375_2537750_+	helix-turn-helix domain-containing protein	A0A1I9KF60	Aeromonas_phage	9.0e-21	43.4
WP_150389644.1\|2537764_2538181_-\|tail	tail fiber assembly protein	NA	NA	NA	NA
WP_150389645.1\|2538191_2538854_-	hypothetical protein	U5P0I1	Shigella_phage	3.1e-16	33.3
WP_150389646.1\|2539338_2540796_-	hypothetical protein	A0A0E3M0V5	Enterobacteria_phage	5.4e-21	30.6
WP_150389647.1\|2540795_2541449_-	DUF2313 domain-containing protein	O22003	Shigella_phage	1.7e-46	47.7
WP_150389648.1\|2541439_2542495_-\|plate	baseplate J/gp47 family protein	M1FQW3	Enterobacteria_phage	2.6e-105	56.6
WP_150389649.1\|2542487_2542898_-	hypothetical protein	Q8W616	Enterobacteria_phage	1.9e-27	48.5
WP_150389650.1\|2542902_2543418_-\|plate	phage baseplate assembly protein V	B5TK73	Pseudomonas_phage	1.1e-32	51.5
WP_150389651.1\|2543417_2544485_-\|plate	baseplate protein	M1FN92	Enterobacteria_phage	1.2e-86	48.7
WP_150389652.1\|2544481_2545765_-	DNA circularization protein	S5FUX4	Shigella_phage	6.4e-74	38.1
WP_150389653.1\|2545767_2547627_-\|tail	phage tail tape measure protein	Q8SBG9	Shigella_phage	4.2e-151	64.8
WP_150389654.1\|2547776_2548052_-\|tail	phage tail assembly protein	M1FPE4	Enterobacteria_phage	2.9e-16	48.3
WP_150389655.1\|2548048_2548405_-\|tail	phage tail protein	Q8W622	Enterobacteria_phage	1.7e-45	69.5
WP_150389656.1\|2548405_2549908_-\|tail	phage tail protein	Q8HAC5	Salmonella_phage	5.8e-143	55.3
WP_150389657.1\|2549907_2550117_-	DUF2635 domain-containing protein	Q8SBH3	Shigella_phage	4.0e-10	69.0
WP_150389658.1\|2550799_2551321_-	hypothetical protein	M1FPE2	Enterobacteria_phage	4.4e-42	53.7
WP_150389659.1\|2551335_2551701_-\|head,tail	head-tail adaptor protein	NA	NA	NA	NA
WP_150389660.1\|2551697_2552018_-\|head,tail	phage gp6-like head-tail connector protein	Q8SBH7	Shigella_phage	3.1e-14	42.5
WP_150389661.1\|2552020_2552509_-	hypothetical protein	NA	NA	NA	NA
WP_150389662.1\|2552568_2553846_-\|capsid	phage major capsid protein	Q6UAX6	Klebsiella_phage	2.5e-147	65.0
WP_150389663.1\|2553912_2554851_-	S49 family peptidase	Q6UAX7	Klebsiella_phage	8.4e-84	54.0
WP_150389664.1\|2554838_2556086_-\|portal	phage portal protein	Q6UAX8	Klebsiella_phage	7.6e-149	62.3
WP_150389665.1\|2556085_2556271_-	hypothetical protein	NA	NA	NA	NA
WP_150389666.1\|2556264_2557986_-\|terminase	terminase large subunit	M1FN87	Enterobacteria_phage	4.3e-259	73.5
WP_150389667.1\|2557995_2558481_-\|terminase	phage terminase small subunit P27 family	A0A2D1GNP3	Pseudomonas_phage	5.6e-47	57.1
WP_150389668.1\|2558583_2558955_-	HNH endonuclease	S5FKR6	Shigella_phage	4.4e-28	48.7
WP_150389669.1\|2559043_2559586_-	DUF2514 family protein	A0A059VF51	Pseudomonas_phage	1.4e-06	71.8
WP_150389670.1\|2559582_2560101_-	glycoside hydrolase family protein	V5YSX1	Pseudomonas_phage	5.5e-69	76.0
WP_150389671.1\|2560087_2560411_-\|holin	phage holin, lambda family	A5X9I3	Aeromonas_virus	1.3e-23	53.5
WP_150389672.1\|2560683_2561466_+	LuxR family transcriptional regulator	NA	NA	NA	NA
WP_150389673.1\|2561652_2562201_-	hypothetical protein	NA	NA	NA	NA
WP_150389674.1\|2562218_2562422_-	hypothetical protein	NA	NA	NA	NA
WP_150389675.1\|2562431_2562629_-	hypothetical protein	NA	NA	NA	NA
WP_150389676.1\|2562832_2563087_-	hypothetical protein	NA	NA	NA	NA
WP_150389677.1\|2563104_2563368_-	hypothetical protein	NA	NA	NA	NA
WP_150389678.1\|2563596_2564286_-	hypothetical protein	R9VWB9	Serratia_phage	1.7e-70	59.3
WP_150389679.1\|2564413_2564719_+	hypothetical protein	NA	NA	NA	NA
WP_150389680.1\|2564690_2565380_-\|integrase	tyrosine-type recombinase/integrase	K4K327	Caulobacter_virus	1.0e-09	29.7
WP_150389681.1\|2565733_2566183_-	hypothetical protein	NA	NA	NA	NA
WP_150390561.1\|2566209_2566752_-	antitermination protein	NA	NA	NA	NA
WP_150389682.1\|2566838_2567195_-	DUF1064 domain-containing protein	T1SA23	Salmonella_phage	2.8e-24	57.8
WP_150389683.1\|2567191_2568181_-	DUF968 domain-containing protein	R9TRM9	Vibrio_phage	1.8e-36	32.8
WP_150389684.1\|2568177_2568444_-	hypothetical protein	NA	NA	NA	NA
WP_150389685.1\|2568433_2568742_-	DUF3283 family protein	NA	NA	NA	NA
WP_150389686.1\|2568910_2569534_-	3'-5' exoribonuclease	A0A1I9KF44	Aeromonas_phage	4.2e-39	46.4
WP_150389687.1\|2569530_2570337_-	Rha family transcriptional regulator	A0A248SL11	Klebsiella_phage	2.1e-27	44.4
WP_150389688.1\|2570383_2570767_-	DUF4406 domain-containing protein	A0A1V0E824	Vibrio_phage	2.3e-19	51.1
WP_150389689.1\|2570868_2571075_-	hypothetical protein	NA	NA	NA	NA
WP_150389690.1\|2571074_2571302_-	hypothetical protein	NA	NA	NA	NA
WP_150389691.1\|2571298_2571820_-	hypothetical protein	I6NVL3	Burkholderia_virus	6.7e-06	70.3
WP_150389692.1\|2571816_2572077_-	hypothetical protein	A0A1I9KFB1	Aeromonas_phage	1.8e-12	50.0
WP_150389693.1\|2572076_2572346_-	hypothetical protein	NA	NA	NA	NA
WP_150390562.1\|2572348_2572801_-	hypothetical protein	NA	NA	NA	NA
WP_150389694.1\|2572811_2573876_-	hypothetical protein	A0A1I9KG10	Aeromonas_phage	2.1e-30	46.8
WP_150389696.1\|2573868_2574072_-	hypothetical protein	NA	NA	NA	NA
WP_150389697.1\|2574064_2575063_-	peptidase	A0A1C9IHV9	Salmonella_phage	1.5e-46	43.1
WP_150389699.1\|2575131_2575638_-	transcriptional regulator	NA	NA	NA	NA
WP_150389701.1\|2575621_2575870_-	hypothetical protein	NA	NA	NA	NA
WP_150389703.1\|2575976_2576660_+	hypothetical protein	K7P850	Enterobacteria_phage	1.1e-16	32.9
WP_150389704.1\|2576683_2577472_-	hypothetical protein	Q8H9M0	Vibrio_phage	1.5e-09	28.4
WP_150389706.1\|2578602_2578824_+	hypothetical protein	NA	NA	NA	NA
WP_150389708.1\|2578859_2579189_+	hypothetical protein	Q6JII5	Burkholderia_virus	6.1e-13	41.4
WP_150389709.1\|2579185_2579809_+	hypothetical protein	A0A1I9KF89	Aeromonas_phage	2.5e-55	73.4
WP_150389711.1\|2579805_2581125_+	phage N-6-adenine-methyltransferase	Q8HA94	Salmonella_phage	5.4e-52	50.0
2585758:2585777	attR	NA	NA	NA	NA

DBSCAN-SWA_4

2676334 : 2682625

Bacillus_thuringiensis_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_150389772.1\|2676334_2677282_+	DUF218 domain-containing protein	Q56AS0	Bacillus_thuringiensis_phage	2.6e-24	100.0
WP_150389773.1\|2677366_2677981_-	superoxide dismutase	Q56AR7	Bacillus_thuringiensis_phage	1.5e-113	98.0
WP_005354955.1\|2677998_2678478_-	hypothetical protein	Q56AR5	Bacillus_thuringiensis_phage	3.0e-37	98.7
WP_005335957.1\|2678654_2679671_-	chemotaxis protein CheV	Q56AR1	Bacillus_thuringiensis_phage	1.3e-191	99.7
WP_150389775.1\|2679852_2680572_+	SDR family NAD(P)-dependent oxidoreductase	Q56AQ6	Bacillus_thuringiensis_phage	3.3e-128	94.1
WP_150389777.1\|2680558_2682625_-	GNAT family N-acetyltransferase	Q56AQ2	Bacillus_thuringiensis_phage	2.3e-94	91.2

DBSCAN-SWA_5

3658515 : 3669629

Phage_NCTB(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_019446506.1\|3658515_3659337_+	HDOD domain-containing protein	A0A1C3NFB0	Phage_NCTB	4.6e-09	24.0
WP_150390169.1\|3659465_3659963_+	GNAT family N-acetyltransferase	G9BWD5	Planktothrix_phage	9.8e-07	27.7
WP_005340085.1\|3660118_3660295_-	hypothetical protein	NA	NA	NA	NA
WP_021231596.1\|3660801_3662079_-	sodium:proton antiporter	A0A2H4J178	uncultured_Caudovirales_phage	7.1e-41	39.8
WP_150390170.1\|3662295_3665991_+	methionine synthase	A0A140XBC7	Dickeya_phage	4.3e-22	80.3
WP_005340088.1\|3666222_3667119_+	30S ribosomal protein S6--L-glutamate ligase	A0A1D7SR78	Cyanophage	7.9e-39	34.3
WP_139740289.1\|3667190_3667748_-	hypothetical protein	NA	NA	NA	NA
WP_150390171.1\|3667740_3668964_-	HAMP domain-containing histidine kinase	NA	NA	NA	NA
WP_150390172.1\|3668960_3669629_-	response regulator	W8CYM9	Bacillus_phage	7.5e-26	33.3

DBSCAN-SWA_6

4125272 : 4134399

Indivirus(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_150390331.1\|4125272_4128095_+	TMAO reductase system sensor histidine kinase/response regulator TorS	A0A1V0SGX0	Hokovirus	1.5e-43	30.2
WP_150390332.1\|4128146_4128431_-	hypothetical protein	NA	NA	NA	NA
WP_005338884.1\|4128755_4130009_+	serine hydroxymethyltransferase	A0A219Y950	Aeromonas_phage	3.9e-100	53.2
WP_005338880.1\|4130173_4130623_+	transcriptional regulator NrdR	NA	NA	NA	NA
WP_150390333.1\|4130720_4131830_+	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	A0A1V0SE20	Indivirus	5.2e-48	32.5
WP_150390334.1\|4131885_4132539_+	riboflavin synthase	A0A1V0SE20	Indivirus	3.5e-20	37.3
WP_021230382.1\|4132688_4133798_+	bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II	A0A2H4PQS2	Staphylococcus_phage	2.1e-65	39.5
WP_005338866.1\|4133928_4134399_+	6,7-dimethyl-8-ribityllumazine synthase	A0A2H4PQS3	Staphylococcus_phage	5.1e-29	47.3

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP044060

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection