CRISPRimmunity

Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP029189	Streptomyces venezuelae strain ATCC 21018 chromosome, complete genome	18 crisprs	WYL,csa3,DEDDh,cas4,Cas14u_CAS-V,cas3,DinG	8	5	1	0

1. NZ_CP029189

CRISPR-Cas detection and classification

Crispr_ID: NZ_CP029189_1

• CRISPR_ID: NZ_CP029189_1
• CRISPR_location: 1253822-1253926
• CRISPR_type: Orphan
• Repeat_type: NA
• Spacer_info: 1 spacers

Consensus repeat of NZ_CP029189_1

Consensus_repeat	Method
TGGCACGGATATCCGGCGGCGCAGGC	CRISPRCasFinder

spacers of NZ_CP029189_1

>1.1|1253848|53|NZ_CP029189|CRISPRCasFinder
GCCCCGGGTGCCACAGACATCCCAGGTGTCACGAGCACCGCAGGTGCCCCGGG

CRISPR arrays and Neighbor proteins around NZ_CP029189_1

CRISPR arrays

The CRISPR arrays of NZ_CP029189_1

>merge|NZ_CP029189|1|1253822-1253926|CRISPRCasFinder
TGGCACGGATATCCGGCGGCGCAGGCGCCCCGGGTGCCACAGACATCCCAGGTGTCACGAGCACCGCAGGTGCCCCGGGTGGCACGGACATCCGGCGGCGCAGGC

>NZ_CP029189|1|1|1253822-1253926|CRISPRCasFinder
TGGCACGGATATCCGGCGGCGCAGGC	GCCCCGGGTGCCACAGACATCCCAGGTGTCACGAGCACCGCAGGTGCCCCGGG
TGGCACGGACATCCGGCGGCGCAGGC

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP029189.1|WP_150256477.1|1249624_1252453_-|HAMP-domain-containing-protein	unknown	unknown	gnl|CDD|377989
NZ_CP029189.1|WP_150256475.1|1248712_1249180_-|DUF742-domain-containing-protein	unknown	unknown	gnl|CDD|283084
NZ_CP029189.1|WP_150256483.1|1262500_1263127_+|carboxyltransferase-domain-containing-protein	unknown	unknown	gnl|CDD|367142
NZ_CP029189.1|WP_150256469.1|1245224_1245734_-|NUDIX-domain-containing-protein	unknown	unknown	gnl|CDD|240031
NZ_CP029189.1|WP_150256465.1|1244237_1244585_+|metalloregulator-ArsR/SmtB-family-transcription-factor	unknown	unknown	gnl|CDD|238042
NZ_CP029189.1|WP_150256471.1|1245875_1246244_+|DUF962-domain-containing-protein	unknown	unknown	gnl|CDD|377609
NZ_CP029189.1|WP_150256479.1|1254083_1258814_-|hypothetical-protein	unknown	unknown	gnl|CDD|274256
NZ_CP029189.1|WP_150256485.1|1264257_1265655_-|HEAT-repeat-domain-containing-protein	unknown	unknown	unknown
NZ_CP029189.1|WP_150256474.1|1246769_1247960_+|lipid-transfer-protein	unknown	unknown	gnl|CDD|180373
NZ_CP029189.1|WP_106971552.1|1248105_1248699_-|ATP-binding-protein	unknown	unknown	gnl|CDD|367304
NZ_CP029189.1|WP_150256489.1|1267006_1268629_+|hypothetical-protein	unknown	unknown	gnl|CDD|238540
NZ_CP029189.1|WP_150256481.1|1258888_1259800_-|hypothetical-protein	unknown	unknown	unknown
NZ_CP029189.1|WP_150256473.1|1246278_1246773_+|benzoylsuccinyl-CoA-thiolase	unknown	unknown	gnl|CDD|224462
NZ_CP029189.1|WP_150256487.1|1265989_1266412_-|ankyrin-repeat-domain-containing-protein	unknown	unknown	gnl|CDD|293786
NZ_CP029189.1|WP_150256482.1|1260080_1261592_-|hypothetical-protein	unknown	unknown	unknown
NZ_CP029189.1|WP_150256467.1|1244618_1245056_+|SRPBCC-domain-containing-protein	unknown	unknown	gnl|CDD|176856
NZ_CP029189.1|WP_030031218.1|1266742_1266937_+|hypothetical-protein	unknown	unknown	unknown
NZ_CP029189.1|WP_150261706.1|1263131_1263989_+|biotin-dependent-carboxyltransferase-family-protein	unknown	unknown	gnl|CDD|376868
NZ_CP029189.1|WP_030016314.1|1249190_1249628_-|roadblock/LC7-domain-containing-protein	unknown	unknown	gnl|CDD|367422
NZ_CP029189.1|WP_150261705.1|1261736_1262504_+|5-oxoprolinase-subunit-PxpA	unknown	unknown	gnl|CDD|377121

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NZ_CP029189.1|WP_150256477.1|1249624_1252453_-|HAMP-domain-containing-protein	gnl|CDD|377989	pfam08376, NIT, Nitrate and nitrite sensing. The nitrate- and nitrite sensing domain (NIT) is found in receptor components of signal transducing pathways in bacteria which control gene expression, cellular motility and enzyme activity in response to nitrate and nitrite concentrations. The NIT domain is predicted to be all alpha-helical in structure.	5.55868e-34
NZ_CP029189.1|WP_150256475.1|1248712_1249180_-|DUF742-domain-containing-protein	gnl|CDD|283084	pfam05331, DUF742, Protein of unknown function (DUF742). This family consists of several uncharacterized Streptomyces proteins as well as one from Mycobacterium tuberculosis. The function of these proteins is unknown.	4.19782e-36
NZ_CP029189.1|WP_150256483.1|1262500_1263127_+|carboxyltransferase-domain-containing-protein	gnl|CDD|367142	pfam02682, CT_C_D, Carboxyltransferase domain, subdomain C and D. Urea carboxylase (UC) catalyzes a two-step, ATP- and biotin-dependent carboxylation reaction of urea. It is composed of biotin carboxylase (BC), carboxyltransferase (CT), and biotin carboxyl carrier protein (BCCP) domains. The CT domain of UC consists of four subdomains, named A, B, C and D. This domain covers the C and D subdomains of the CT domain. This domain covers the whole length of kipI (kinase A inhibitor) from Bacillus subtilis. It can also be found in S. cerevisiae urea amidolyase Dur1,2, which is a multifunctional biotin-dependent enzyme with domains for urea carboxylase and allophanate (urea carboxylate) hydrolase activity.	3.9292e-63
NZ_CP029189.1|WP_150256469.1|1245224_1245734_-|NUDIX-domain-containing-protein	gnl|CDD|240031	cd04674, Nudix_Hydrolase_16, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required.	7.16068e-51
NZ_CP029189.1|WP_150256465.1|1244237_1244585_+|metalloregulator-ArsR/SmtB-family-transcription-factor	gnl|CDD|238042	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors. ARSR subfamily of helix-turn-helix bacterial transcription regulatory proteins (winged helix topology). Includes several proteins that appear to dissociate from DNA in the presence of metal ions.	5.64915e-11
NZ_CP029189.1|WP_150256471.1|1245875_1246244_+|DUF962-domain-containing-protein	gnl|CDD|377609	pfam06127, DUF962, Protein of unknown function (DUF962). This family consists of several eukaryotic and prokaryotic proteins of unknown function. The yeast protein YGL010W has been found to be non-essential for cell growth.	1.98238e-33
NZ_CP029189.1|WP_150256479.1|1254083_1258814_-|hypothetical-protein	gnl|CDD|274256	TIGR02680, conserved_hypothetical_protein, TIGR02680 family protein. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length. [Hypothetical proteins, Conserved].	4.41402e-10
NZ_CP029189.1|WP_150256474.1|1246769_1247960_+|lipid-transfer-protein	gnl|CDD|180373	PRK06059, PRK06059, lipid-transfer protein; Provisional.	0
NZ_CP029189.1|WP_106971552.1|1248105_1248699_-|ATP-binding-protein	gnl|CDD|367304	pfam03029, ATP_bind_1, Conserved hypothetical ATP binding protein. Members of this family are found in a range of archaea and eukaryotes and have hypothesized ATP binding activity.	7.2496e-42
NZ_CP029189.1|WP_150256489.1|1267006_1268629_+|hypothetical-protein	gnl|CDD|238540	cd01120, RecA-like_NTPases, RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.	0.000968152
NZ_CP029189.1|WP_150256473.1|1246278_1246773_+|benzoylsuccinyl-CoA-thiolase	gnl|CDD|224462	COG1545, COG1545, Predicted nucleic-acid-binding protein containing a Zn-ribbon [General function prediction only].	8.8632e-17
NZ_CP029189.1|WP_150256487.1|1265989_1266412_-|ankyrin-repeat-domain-containing-protein	gnl|CDD|293786	sd00045, ANK, ankyrin repeats. Ankyrin repeats are one of the most abundant repeat motifs, and generally function as scaffolds for protein-protein interactions in processes including cell cycle, transcriptional regulation, signal transduction, vesicular trafficking, and inflammatory response. Although predominantly found in eukaryotic proteins, they are also found in some bacterial and viral proteins. Less is known of their physiological roles in prokaryotes. Some bacterial ANK proteins play key roles in microbial pathogenesis by mimicking or manipulating host function(s). The pathogen Providencia alcalifaciens N-formyltransferase ankyrin repeats function in small molecule binding and allosteric control. Ankyrin-repeat proteins have been associated with a number of human diseases.	5.42944e-15
NZ_CP029189.1|WP_150256467.1|1244618_1245056_+|SRPBCC-domain-containing-protein	gnl|CDD|176856	cd07814, SRPBCC_CalC_Aha1-like, Putative hydrophobic ligand-binding SRPBCC domain of Micromonospora echinospora CalC, human Aha1, and related proteins. This family includes the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of Micromonospora echinospora CalC, human Aha1, and related proteins. Proteins in this group belong to the SRPBCC domain superfamily of proteins, which bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. MeCalC confers resistance to the enediyne, calicheamicin gamma 1 (CLM), by a self sacrificing mechanism which results in inactivation of both CalC and the highly reactive diradical enediyne species. MeCalC can also inactivate two other enediynes, shishijimicin and namenamicin. A crucial Gly of the MeCalC CLM resistance mechanism is not conserved in this subgroup. This family also includes the C-terminal, Bet v1-like domain of Aha1, one of several co-chaperones, which regulate the dimeric chaperone Hsp90. Aha1 promotes dimerization of the N-terminal domains of Hsp90, and stimulates its low intrinsic ATPase activity, and may regulate the dwell time of Hsp90 with client proteins. Aha1 can act as either a positive or negative regulator of chaperone-dependent activation, depending on the client protein, but the mechanisms by which these opposing functions are achieved are unclear. Aha1 is upregulated in a number of tumor lines co-incident with the activation of several signaling kinases.	1.00608e-19
NZ_CP029189.1|WP_150261706.1|1263131_1263989_+|biotin-dependent-carboxyltransferase-family-protein	gnl|CDD|376868	pfam02626, CT_A_B, Carboxyltransferase domain, subdomain A and B. Urea carboxylase (UC) catalyzes a two-step, ATP- and biotin-dependent carboxylation reaction of urea. It is composed of biotin carboxylase (BC), carboxyltransferase (CT), and biotin carboxyl carrier protein (BCCP) domains. The CT domain of UC consists of four subdomains, named A, B, C and D. This domain covers the A and B subdomains of the CT domain. This domain covers the whole length of KipA (kinase A) from Bacillus subtilis. It can also be found in S. cerevisiae urea amidolyase Dur1,2, which is a multifunctional biotin-dependent enzyme with domains for urea carboxylase and allophanate (urea carboxylate) hydrolase activity.	8.49919e-100
NZ_CP029189.1|WP_030016314.1|1249190_1249628_-|roadblock/LC7-domain-containing-protein	gnl|CDD|367422	pfam03259, Robl_LC7, Roadblock/LC7 domain. This family includes proteins that are about 100 amino acids long and have been shown to be related. Members of this family of proteins are associated with both flagellar outer arm dynein and Drosophila and rat brain cytoplasmic dynein. It is proposed that roadblock/LC7 family members may modulate specific dynein functions. This family also includes Golgi-associated MP1 adapter protein and MglB from Myxococcus xanthus, a protein involved in gliding motility. However the family also includes members from non-motile bacteria such as Streptomyces coelicolor, suggesting that the protein may play a structural or regulatory role.	7.37636e-25
NZ_CP029189.1|WP_150261705.1|1261736_1262504_+|5-oxoprolinase-subunit-PxpA	gnl|CDD|377121	pfam03746, LamB_YcsF, LamB/YcsF family. This family includes LamB. The lam locus of Aspergillus nidulans consists of two divergently transcribed genes, lamA and lamB, involved in the utilisation of lactams such as 2-pyrrolidinone. Both genes are under the control of the positive regulatory gene amdR and are subject to carbon and nitrogen metabolite repression. The exact molecular function of the proteins in this family is unknown.	4.1627e-130

Protein sequences

>NZ_CP029189.1|WP_150256477.1|1249624_1252453_-|HAMP-domain-containing-protein
MRFRGKSIRRKIVALLLVPLVSLTALWGIATVITGREALQLFDVAYIIDKVGYPVEDVARVIQKERRQTLVVLGDPRAATATAELTKRRAETDLAVEQISVSARDPKVIDELSPDSAQRLRSIVTAFQGIGAMRRSVDQNALDPTQALDLYNRLVDPCYDFLMNLHGLDNVEVDKEGRALVGISRARELLSREDAVIASALAARNVTAPDVRRVSDFVANRTLLYEFNLVTLPAEDRERFEKYWKDPGTQPLRDAEERFIAGGAANKPRSVTAAQWDEASTKVLDDLAAMNTDAGNRYQQRIEPVARDVMVQAAAAGVLGFLALTVSLVLSVRIGRDLVRDLSRLRKEAHEASGVRLPSVMRRLAAGEHVDVETEAPHLEYEKDEVGQVGQALNTLQRAAVEAAVKQADLRRGVSEVFVNLARRNQVLLHRQLTLLDTMERRTEDTEELADLFRLDHMTTRMRRHAEGLVILSGAAPSRQWRKPVQLMDVVRAAVAEVEDYERIEVRRLTRLGIVGPAVADITHLIAELLENATVFSPPHTAVQVHGERVANGFTLEIHDRGLGMTPEALLDANLRLAETPEFELSDTDRLGLFVVSRLAQRHSVKVVLQPSPYGGTTAVLFLPSALLTEAPETNGAGARFDGARAAAKPLRSDKSGHLGRAGSERSAPAAMERTPSGRQLPTGELRGPVELEAPLPAGGLDRLDGLDDPAVLDDAPTAITGRTAAGRPVMATLDDETPPNGIPRSALLGLRAADRPHNDRHADRGGSRKGGRDRESLAPTGPVRLDTQRVETQRPDGSRSQGAVPLPRRRPTPTLVADHGRRVEPRPVSVVPQPSPASTAGPDAGSDAGASAPGPGIGGLPRRVRQASLAPQLKKSPSAAPAEAAPDQAADRDAEDVRTRMSALQRGWTAGRNQHAQQKSETGAGTSAAGGPANENEGDGR
>NZ_CP029189.1|WP_030016314.1|1249190_1249628_-|roadblock/LC7-domain-containing-protein
MTAPQTGNDTRGRGSGPLNWLLDELVDRVGSIRKAVVLSGDGLPTGSSKDLTREDSEHLAAVASGFHSLAKGVGRHFDSGRVRQTVVELDEAFLFVMAAGDGSCLAVLADADSDVGQVAYEMTLMVKRVGDHLATAPRTGLPAGG
>NZ_CP029189.1|WP_150256475.1|1248712_1249180_-|DUF742-domain-containing-protein
MSDSRQDHPTGIPAGFTVDPSYSDTDPLDPDHAHWFDDDAGPVVRPYAMTRGRTSHAGQHRLDLIALVVAEPAADDPVWDMTLSPEHAHILGLCRDRPQSVAELAADLDLAVGVVRVLIGDLVDEELVHVTRPVPPAELPDESILREVIDGLRAL
>NZ_CP029189.1|WP_106971552.1|1248105_1248699_-|ATP-binding-protein
MHAVSPVEPLTLKILVAGGFGVGKTTLVSAVSEIRPLRTEERLSEPGVGVDDTGGVEGKSTTTVAMDFGRITLREDLVLYLFGTPGQDRFWFLWDELAQGSLGAVVLADTRRLADCFAAIDYFERRAIPFVVAVNCFDGADRHPVVTVRTALDLDPGVPVLLCDARDRESVKDVLVGVVEHAMSLARERRRSLSAGA
>NZ_CP029189.1|WP_150256474.1|1246769_1247960_+|lipid-transfer-protein
MSADIAVLGAGMHPWGKWGRSFVEYGRAAARSALADAGLDWTAVQSIVGANTVRSGYPGYVAGATFARALGWQGARVTSVYAACASGAQAIGAARAQILAGLADVVLVVGADAAPKGFFAPAGGDRPDDPDWLRFRVLGATNPAYFALYARRRMALHGDTPEDFAQVKVKNAAAGLLNPYARYRKQVTAEEVAASAVVADPLRLLDICATSDGGAALVLTSMEFARARGVADPVRIRAVSTVTPGYPRTVLDLPDIATDSARAVAPSAGSFRSSIARAAYEEAGLGPEDLSLAEVYDLSTALELEWYEDIGLCGEGEGAKLVREGATALGGRIPVNTSGGLASFGEAVPAQAIAQVCELTWQLRGTAGERQVPGARAGITANQGLFGHGSAVVAVR
>NZ_CP029189.1|WP_150256473.1|1246278_1246773_+|benzoylsuccinyl-CoA-thiolase
MARTRTPVVSGWFTEDAPDGGGFRLLGTRCSACTAVFFPREDTYCRNPHCPGGGELAEVPLSPRGRVWSYTDGRYRPPAPYVSDPAVPWEPYTLVAVELEAEGMVVLGQAAPGVGVADLAVGMEVEVVGGVLNEEAGTAEASGAPGASGTVWTTWQFRPVGGAE
>NZ_CP029189.1|WP_150256471.1|1245875_1246244_+|DUF962-domain-containing-protein
MTFTSYEEFWPYYVAMHSRAATRWIHLTGTLTGLAVTAYGLARGRRRYLAALPLIGYGTAWPAHFLIEGNNPATFGHPAWSLRGDTQMIRMMLAGRDAELGEIAQKWLAENPCQGRPPVADS
>NZ_CP029189.1|WP_150256469.1|1245224_1245734_-|NUDIX-domain-containing-protein
MPAHLKDSHCSTCGAQYATPEWPRTCAACGATAYRNPLPVAVTLLPVEDADGSGLVVITRTIEPALGGVALPGGFIDFGEDWRDAMVRELFEETGITAPASEVVLADALSSPAGHLLLFGLLPPRPAAELPASKATDETTGWHILRTPSVLAFPLHTQAAASWFAGKYA
>NZ_CP029189.1|WP_150256467.1|1244618_1245056_+|SRPBCC-domain-containing-protein
MVDILHRVGVTAAPEKVYEALTTVEGLAAWWTTDTSGDGDGVLEFRFGDLGGFDMKVLELRPDARVLWEVVDGPPEWIGTTVSFDLTREGEWTIITFAHAGWREPVEFMNHCSTKWAIFLMSLKSLVETGSGAPHPRDVQISNWH
>NZ_CP029189.1|WP_150256465.1|1244237_1244585_+|metalloregulator-ArsR/SmtB-family-transcription-factor
MSTAVDDDLWSAIGDPTRRRMIDLLLADGQGTATTLSAHLPVTRQAVTKHLAVLDRVGLVRSAPAGREKRYQVDEAQLARAVAQLNSVGEMWDARLRRVKSLAEAIQRAKDAEKK
>NZ_CP029189.1|WP_150256479.1|1254083_1258814_-|hypothetical-protein
MYELSRIRLYSIGPAGARYADTVLDLRGVGEPVPHPAPAQAEFFEEEPTGPPRRPAPAGVLFLENGGGKSVLLKLIFSVMLPGHRNTLGGASSGVLRKFLLADDCGHVALEWQHTQTGECVVVGKVSEWRGRQVSNDPRKFAEAWYSFRPGPGLSLDSLPVAEATSVRPPVEGASGAQGRRRTMKGFRDSLTEAGKAYPHLEVYFEEIHDRWNEHLTELGLDPELFRYQREMNADEGEAAGLFAVKKDSDFTDLLLRAVTDTRDTDGLADLVHGFGNKLGRRAELMAERDFTAGSVDLLTRIVEAAAARSRLRDVHAGAERRTRTLARRLSARAAEERGRAADLAQQVTGAAHQVTAAESARTRSAAVSAELAYRHASLALTVADKAAAAQRRELLEARTLHSAWQAAENVLRHRAAADRSARVAAAILEAERDAAPALAARATAAGELVRALHTAAEHGERLANEEEERSAALQSTGEDAHRDATAAATAAQRARSEAEHLRSRLAEVQQETAEAVRAGWLDDTAPDADPARAALAATDAEKAAVAAWDESREAAREAAEAAREAAAAESRAELTAARAADAADAAEAAHDAEHRAAASLATAPRLADLLGLPSVPASFLPHPRSQSGTAGALAGAGAQAASAGAAHGAAGQGPAPAGPAGRPEGAAGGGLTAADLDRNADDLRALLTDAVAAAERQLFELRTAAADDSRILGALGDGGLLPPGPDVLATVEYLGEHGIPALPGWRYLAQSVDPADHAAVLAARPELVDGVVITDPDTHGRAREVLSGAALLPRSTVAVGTAAALLAPLPPAGDDSGVFLVPPNPAMHDEGAADEERQALRARAAARDTEIRDLAARLGGDRELAARLASWRTGCPPGRLTELAEAAAAARMFAEETDAELAEARTVRAEADEAAADAARVREERQDAAQRARRAADALAGLAFRLRERAGWQAKLRELADDAAESEARAEVCLDRARAADEDRRAAQRAADDARRTARALRAERAEIAGAPDQLPDGDGDAPRAPLPDLREAYRAASQLYEKVGVGADLRAEQARAESDESAALAELDRLTNKVRTRAAQLLESTDGSDGPSRQAAAARAESLVQMLETRASTASEQLGRLRGEAERHAPTEGEAHTELPEELVPENVEQAQALLRTATAQLAAHSAAVESARAAHADLLRAHRTAEDGAGGFDETAAMLRDLLRDHTHQDDEHEPVPHAGTLEEARQSATEARRSLRGCSADLSAAESAVREASDILVRHANATRYEQVRTPARQQIRELPASALPEHAAAWAAAFAPRLRVLTDELAQLERNRDSIVDRLRGLVESALATLRSAQRLSQLPEGLGEWSGQEFLRIRFEEPDQATLTERLGEVIDEATRAAVKKNSSASFGEGRRDGMSLLLRGVQAALEPKGISVEILKPDAVLRAERVPVGQMGDVFSGGQLLTAAIALYCTMAALRSNDRGRDKHRHAGTLFLDNPIGRANATYLLELQRAVSDALGVQLLYTTGLFDTTALAEFPLVIRLRNDADLRAGLKYISVEEHLRPGLPQRSPEGETIHGEITATRMFRRSGAS
>NZ_CP029189.1|WP_150256481.1|1258888_1259800_-|hypothetical-protein
MSDHHAEHPAWSEPDAPSAPAHAPTPAGPTPVTPADAADAARLVAFGLQPKLLPARDAEYAELLRRYREDPAFGRLADAVATGLGLVVLEVSPRAGMAVAAGEDSVFAVRMGDYARRTAADSADRFLHGLAHLAVAALAFPRPEDLADDGYIGRITVNGVDAFVRQTCRRLEERAEELGENTDPASDAPGLEAAWRVYARRSATGATKDARRLAGSTTGIVGKAAAFLTDSGFLQRTGDEAGGTYRTTPRYQLQVRDMAGSAAMAELLELGVVPVSDGSATLLPPPEGDDLDLAADAGLPFHA
>NZ_CP029189.1|WP_150256482.1|1260080_1261592_-|hypothetical-protein
MSVTLPAPAKTLPSPAPGPAADEGLARRLRALACTAPLHDLDVRKANLAGEYGVYAMAEVALAAIDLVTLNMDFDTGADHEQIVARLLPRVAAQAPVRPAAEHERVARWVLENLINVGSVDRGFRAIYGTFGPDGVYVRRDYDFKLIEEVPGHGGVVYLRTTDEAVNVLVGALDTDVTSAQIAAEVKLEVLISRGRLADAQLAAEQARYRTVQYAETLRRTLDATRRNVRAVDWLQAVPDMIAEALDHVADRYRHENAILTNIRKARDEAEEPENKRRAAELVDIVKDCIRRHTQLQSRLLDAGPLFRAEQDRQAFAAPAPRSGIDLYGQLVAPLLPLPLEQASRVTTAFFASGAGLRTPVSVRVADLVEILLTPPVEREHLGAEMPEPDLIATPDDSRFSEEQLAAATELLDLPHDAPRRLSGLLAEARRSDPELPYLVALLAVHAASPAVGTAYRQGEERLLFAVDDGTQLDDPEFGGADLIVGTALLDAAGMAADRAEAS
>NZ_CP029189.1|WP_150261705.1|1261736_1262504_+|5-oxoprolinase-subunit-PxpA
MIDLNADLGEGFGRWTLTDDEALLSVVTSANVACGFHAGDPSIMRRVCELAAERGVRIGAQVSYRDLAGFGRRSMDVPPGELADEVAYQIGALEVFARAAGSRVSYVKPHGALYNRTVHDAAQAAAVVAGVRLAAGSGATGGLPVLGLPGSLLLAAAGEAGLAAVPEAFADRAYTPAGTLVPRGEPDAVLHDADAVVARAVRMAAEGAVTAADGSPVRVAARSLCLHGDTPGAAGLARRVREALGTAGVRVEAFA
>NZ_CP029189.1|WP_150256483.1|1262500_1263127_+|carboxyltransferase-domain-containing-protein
MRTLVVGGAALLVELDSADEVAALHAELLRRRDSGELGPVRDVVPAARTVLLDGVRDPAALGARIARWEVPPLAAAQGPQVTVPVRYDGPDLVEVARLWGVAPREVAGVVGAIEFRVAFCGFAPGFGYLTGLPERFHLPRRETPRTAVPAGSLALAGEYAGVYPRPSPGGWQLIGSTDAVLWDPRREPAALFAPGVRVRFTQEGGGRG
>NZ_CP029189.1|WP_150261706.1|1263131_1263989_+|biotin-dependent-carboxyltransferase-family-protein
MLVVRPGALTTVQDGGRPGYAHLGVPRSGALDTAAYALANRLVGNAPGAAALETTLDGVGLRALAATTVAVTGAPCPVRISGRPVAWGAPVRLPAGAELEVGRAESGVRAYVAVRGGLAAPPVLGSRSTDLLSGLGPPVLSDGALLPVGLPGPDPVPGADACGLPGPPSQLLLPLRLGPRADWFTEASLTGLWRSAFRVSASSNRIGLRAEAGSALVRARAGELPSEGMVLGAVQVPPDGLPVVFLADHPVTGGYPVVGVVPPGPALDAAAQARPGVPLRFVRAR
>NZ_CP029189.1|WP_150256485.1|1264257_1265655_-|HEAT-repeat-domain-containing-protein
MFEPVIAPSGTLLGLLQRGRGDGTLHALAAPRAEALEALNQCVLRDPRQDWQVENRSLYYARLYLDLAGPLGEIEAHLFGPDDLVDEEDHRTGLALSVLGHLASYGRDDALMLLRRYAASGANWAWALDELALRDDDEGLRSLAPAVLARFPATAEGGARLAAAVRDAYEPRPWFLWEETPQYGERLRAARQQGSFDRWQRQMTPSGPRPGWGVQAVFDWAADGLRRGTPLHVPAARCLAAVAQPEDRSAILAAAAGADGEAARATALHHLVLAEPDNPAVLDLIEAAADEPAVAAYERMCGPEAVERARRWVHRPDALGEAAAATLAARGGAEDAALVLGALRSTVRGAGPDTRRLFALVDGAGRLAIGCAAPVLRHIYRETASSHLRGRAARALASTDPSFAAGFAVECLWDCEETTREVAARHAETADARVAPRLRRLAADPAEEEDVQSAVRSRIAPESAV
>NZ_CP029189.1|WP_150256487.1|1265989_1266412_-|ankyrin-repeat-domain-containing-protein
MSERAAEGSGSQDVPDEDVIELATKIFDLARQGETEALTAYLDAGVPANLTNDRGDTLVMLAAYHGHADAVSALLARGAEADRANDRGQTPLAGAVFKGEEAVIRALLAGGADPEAGTPSAVDTARMFAKADLLELFGAE
>NZ_CP029189.1|WP_030031218.1|1266742_1266937_+|hypothetical-protein
MVLSISGVVLLGIICFLFFKKDGMKLTHAFVCSLFGFFLAGSAIAPSITASTASLASLLGGIKL
>NZ_CP029189.1|WP_150256489.1|1267006_1268629_+|hypothetical-protein
MARRPLPRILSSGTTSLARGRDLARTAADSATDVLHPLLVIGRGLRILAAAGRRRWSQTPKDKRGPALFLGAACVLVVALVPWGPLLAMITLMAVAAWHGRDRTPAKTGPSDAETERLGSLYEALVPYFSIPEDPSPLFAHGGNWDKAFSGYEFDEAGRITRLHIRYPAYFTDGEATSRARIETLLHAKSGRGREYLFDWDEEGNQLDLKVLAALPTGIAAQPFVTSPGETVLGFTDAGGVQRTLPVLEGDEPREVPPVIWRTGPRSGEPHLLAVGQPGSGTSTLLRSVALQALRHGGDVLVVDGGGSGSGEYSCLSGRAGVLAVECGPTGAQATLEWAAQETERRLIATHRAREAARPAPEDTRRPLWILLDQPSVLAHLSVAEGGPDPLAQLQVPLRHGRPAHVTVVVAEQFGHLELLHDAVWQHTRARVVLGPATVQQVADVLGLPPHTTPTAQVPPGRGYARLGTGPVHRLQVPATPDPYDEATHPAYRQAVLELLPERQPGPGGGRGGLTLAKPLQAQGAALDAPEFPEVRAETP

Crispr_ID: NZ_CP029189_2

• CRISPR_ID: NZ_CP029189_2
• CRISPR_location: 1264021-1264135
• CRISPR_type: Orphan
• Repeat_type: NA
• Spacer_info: 2 spacers

Consensus repeat of NZ_CP029189_2

Consensus_repeat	Method
CGCACGGAGCCGATGCCCACGGAAC	CRISPRCasFinder

spacers of NZ_CP029189_2

>2.1|1264046|20|NZ_CP029189|CRISPRCasFinder
CGGGACGCACGGAGCCGATG
>2.2|1264091|20|NZ_CP029189|CRISPRCasFinder
CGATGCACGCGGGACCGGAG

CRISPR arrays and Neighbor proteins around NZ_CP029189_2

CRISPR arrays

The CRISPR arrays of NZ_CP029189_2

>merge|NZ_CP029189|2|1264021-1264135|CRISPRCasFinder
GGGCCGGGGCCGATGCACGCGGGTCCGGGACGCACGGAGCCGATGCCCACGGAACCGGGACGCACGGAGCCGATGCACGCGGGACCGGAGCGCACGGAGCCGATGCCCGCGGAAC

>NZ_CP029189|2|2|1264021-1264135|CRISPRCasFinder
GGGCCGGGGCCGATGCACGCGGGTC	CGGGACGCACGGAGCCGATG
CCCACGGAACCGGGACGCACGGAGC	CGATGCACGCGGGACCGGAG
CGCACGGAGCCGATGCCCGCGGAAC

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP029189.1|WP_150256482.1|1260080_1261592_-|hypothetical-protein	unknown	unknown	unknown
NZ_CP029189.1|WP_150256477.1|1249624_1252453_-|HAMP-domain-containing-protein	unknown	unknown	gnl|CDD|377989
NZ_CP029189.1|WP_150256483.1|1262500_1263127_+|carboxyltransferase-domain-containing-protein	unknown	unknown	gnl|CDD|367142
NZ_CP029189.1|WP_030031218.1|1266742_1266937_+|hypothetical-protein	unknown	unknown	unknown
NZ_CP029189.1|WP_150256475.1|1248712_1249180_-|DUF742-domain-containing-protein	unknown	unknown	gnl|CDD|283084
NZ_CP029189.1|WP_150256479.1|1254083_1258814_-|hypothetical-protein	unknown	unknown	gnl|CDD|274256
NZ_CP029189.1|WP_007262928.1|1272960_1273335_+|RNA-polymerase-binding-protein-RbpA	unknown	unknown	gnl|CDD|379162
NZ_CP029189.1|WP_150256492.1|1271246_1272647_+|MFS-transporter	unknown	unknown	gnl|CDD|341035
NZ_CP029189.1|WP_150256494.1|1274093_1274918_-|glycosyltransferase	unknown	unknown	gnl|CDD|133062
NZ_CP029189.1|WP_150256485.1|1264257_1265655_-|HEAT-repeat-domain-containing-protein	unknown	unknown	unknown
NZ_CP029189.1|WP_106971552.1|1248105_1248699_-|ATP-binding-protein	unknown	unknown	gnl|CDD|367304
NZ_CP029189.1|WP_150256489.1|1267006_1268629_+|hypothetical-protein	unknown	unknown	gnl|CDD|238540
NZ_CP029189.1|WP_150256481.1|1258888_1259800_-|hypothetical-protein	unknown	unknown	unknown
NZ_CP029189.1|WP_150256487.1|1265989_1266412_-|ankyrin-repeat-domain-containing-protein	unknown	unknown	gnl|CDD|293786
NZ_CP029189.1|WP_150256491.1|1270408_1271179_+|glycerophosphodiester-phosphodiesterase	unknown	unknown	gnl|CDD|176504
NZ_CP029189.1|WP_150256490.1|1268680_1270183_-|aminotransferase-class-I/II-fold-pyridoxal-phosphate-dependent-enzyme	unknown	unknown	gnl|CDD|224089
NZ_CP029189.1|WP_150256493.1|1273443_1274016_-|FxsA-family-protein	unknown	unknown	gnl|CDD|377238
NZ_CP029189.1|WP_150261705.1|1261736_1262504_+|5-oxoprolinase-subunit-PxpA	unknown	unknown	gnl|CDD|377121
NZ_CP029189.1|WP_030016314.1|1249190_1249628_-|roadblock/LC7-domain-containing-protein	unknown	unknown	gnl|CDD|367422
NZ_CP029189.1|WP_150261706.1|1263131_1263989_+|biotin-dependent-carboxyltransferase-family-protein	unknown	unknown	gnl|CDD|376868

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NZ_CP029189.1|WP_150256477.1|1249624_1252453_-|HAMP-domain-containing-protein	gnl|CDD|377989	pfam08376, NIT, Nitrate and nitrite sensing. The nitrate- and nitrite sensing domain (NIT) is found in receptor components of signal transducing pathways in bacteria which control gene expression, cellular motility and enzyme activity in response to nitrate and nitrite concentrations. The NIT domain is predicted to be all alpha-helical in structure.	5.55868e-34
NZ_CP029189.1|WP_150256475.1|1248712_1249180_-|DUF742-domain-containing-protein	gnl|CDD|283084	pfam05331, DUF742, Protein of unknown function (DUF742). This family consists of several uncharacterized Streptomyces proteins as well as one from Mycobacterium tuberculosis. The function of these proteins is unknown.	4.19782e-36
NZ_CP029189.1|WP_150256483.1|1262500_1263127_+|carboxyltransferase-domain-containing-protein	gnl|CDD|367142	pfam02682, CT_C_D, Carboxyltransferase domain, subdomain C and D. Urea carboxylase (UC) catalyzes a two-step, ATP- and biotin-dependent carboxylation reaction of urea. It is composed of biotin carboxylase (BC), carboxyltransferase (CT), and biotin carboxyl carrier protein (BCCP) domains. The CT domain of UC consists of four subdomains, named A, B, C and D. This domain covers the C and D subdomains of the CT domain. This domain covers the whole length of kipI (kinase A inhibitor) from Bacillus subtilis. It can also be found in S. cerevisiae urea amidolyase Dur1,2, which is a multifunctional biotin-dependent enzyme with domains for urea carboxylase and allophanate (urea carboxylate) hydrolase activity.	3.9292e-63
NZ_CP029189.1|WP_150256479.1|1254083_1258814_-|hypothetical-protein	gnl|CDD|274256	TIGR02680, conserved_hypothetical_protein, TIGR02680 family protein. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length. [Hypothetical proteins, Conserved].	4.41402e-10
NZ_CP029189.1|WP_150256492.1|1271246_1272647_+|MFS-transporter	gnl|CDD|341035	cd17482, MFS_YxiO_like, Bacillus subtilis YxiO, Listeria monocytogenes BtlA, and similar transporters of the Major Facilitator Superfamily. This family is composed of Bacillus subtilis MFS-type transporter YxiO, and similar proteins including Listeria monocytogenes BtlA. The function of B. subtilis YxiO is still unknown, and L. monocytogenes BtlA is a putative secondary transporter involved in bile tolerance and general stress resistance. This family belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	2.5536e-139
NZ_CP029189.1|WP_150256494.1|1274093_1274918_-|glycosyltransferase	gnl|CDD|133062	cd06442, DPM1_like, DPM1_like represents putative enzymes similar to eukaryotic DPM1. Proteins similar to eukaryotic DPM1, including enzymes from bacteria and archaea; DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi, and animals, have no transmembrane region, suggesting the existence of adapter molecules for membrane anchoring. This family also includes bacteria and archaea DPM1_like enzymes. However, the enzyme structure and mechanism of function are not well understood. This protein family belongs to Glycosyltransferase 2 superfamily.	6.56607e-100
NZ_CP029189.1|WP_106971552.1|1248105_1248699_-|ATP-binding-protein	gnl|CDD|367304	pfam03029, ATP_bind_1, Conserved hypothetical ATP binding protein. Members of this family are found in a range of archaea and eukaryotes and have hypothesized ATP binding activity.	7.2496e-42
NZ_CP029189.1|WP_150256489.1|1267006_1268629_+|hypothetical-protein	gnl|CDD|238540	cd01120, RecA-like_NTPases, RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.	0.000968152
NZ_CP029189.1|WP_007262928.1|1272960_1273335_+|RNA-polymerase-binding-protein-RbpA	gnl|CDD|379162	pfam13397, RbpA, RNA polymerase-binding protein. RbpA is a family bacterial RNA polymerase-binding proteins. RbpA acts as a transcription factor by binding to the sigma subunit of RNA polymerase.	1.29865e-50
NZ_CP029189.1|WP_150256487.1|1265989_1266412_-|ankyrin-repeat-domain-containing-protein	gnl|CDD|293786	sd00045, ANK, ankyrin repeats. Ankyrin repeats are one of the most abundant repeat motifs, and generally function as scaffolds for protein-protein interactions in processes including cell cycle, transcriptional regulation, signal transduction, vesicular trafficking, and inflammatory response. Although predominantly found in eukaryotic proteins, they are also found in some bacterial and viral proteins. Less is known of their physiological roles in prokaryotes. Some bacterial ANK proteins play key roles in microbial pathogenesis by mimicking or manipulating host function(s). The pathogen Providencia alcalifaciens N-formyltransferase ankyrin repeats function in small molecule binding and allosteric control. Ankyrin-repeat proteins have been associated with a number of human diseases.	5.42944e-15
NZ_CP029189.1|WP_150256491.1|1270408_1271179_+|glycerophosphodiester-phosphodiesterase	gnl|CDD|176504	cd08561, GDPD_cytoplasmic_ScUgpQ2_like, Glycerophosphodiester phosphodiesterase domain of Streptomyces coelicolor cytoplasmic phosphodiesterases UgpQ2 and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized cytoplasmic phosphodiesterases which predominantly exist in bacteria. The prototype of this family is a putative cytoplasmic phosphodiesterase encoded by gene ulpQ2 (SCO1419) in the Streptomyces coelicolor genome. It is distantly related to the Escherichia coli cytoplasmic phosphodiesterases UgpQ that catalyzes the hydrolysis of glycerophosphodiesters at the inner side of the cytoplasmic membrane to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.	1.95637e-89
NZ_CP029189.1|WP_150256490.1|1268680_1270183_-|aminotransferase-class-I/II-fold-pyridoxal-phosphate-dependent-enzyme	gnl|CDD|224089	COG1167, ARO8, Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism].	1.29953e-88
NZ_CP029189.1|WP_150256493.1|1273443_1274016_-|FxsA-family-protein	gnl|CDD|377238	pfam04186, FxsA, FxsA cytoplasmic membrane protein. This is a bacterial family of cytoplasmic membrane proteins. It includes two transmembrane regions. The molecular function of FxsA is unknown, but in Escherichia coli its over-expression has been shown to alleviate the exclusion of phage T7 in those cells with an F plasmid.	6.22328e-27
NZ_CP029189.1|WP_150261705.1|1261736_1262504_+|5-oxoprolinase-subunit-PxpA	gnl|CDD|377121	pfam03746, LamB_YcsF, LamB/YcsF family. This family includes LamB. The lam locus of Aspergillus nidulans consists of two divergently transcribed genes, lamA and lamB, involved in the utilisation of lactams such as 2-pyrrolidinone. Both genes are under the control of the positive regulatory gene amdR and are subject to carbon and nitrogen metabolite repression. The exact molecular function of the proteins in this family is unknown.	4.1627e-130
NZ_CP029189.1|WP_030016314.1|1249190_1249628_-|roadblock/LC7-domain-containing-protein	gnl|CDD|367422	pfam03259, Robl_LC7, Roadblock/LC7 domain. This family includes proteins that are about 100 amino acids long and have been shown to be related. Members of this family of proteins are associated with both flagellar outer arm dynein and Drosophila and rat brain cytoplasmic dynein. It is proposed that roadblock/LC7 family members may modulate specific dynein functions. This family also includes Golgi-associated MP1 adapter protein and MglB from Myxococcus xanthus, a protein involved in gliding motility. However the family also includes members from non-motile bacteria such as Streptomyces coelicolor, suggesting that the protein may play a structural or regulatory role.	7.37636e-25
NZ_CP029189.1|WP_150261706.1|1263131_1263989_+|biotin-dependent-carboxyltransferase-family-protein	gnl|CDD|376868	pfam02626, CT_A_B, Carboxyltransferase domain, subdomain A and B. Urea carboxylase (UC) catalyzes a two-step, ATP- and biotin-dependent carboxylation reaction of urea. It is composed of biotin carboxylase (BC), carboxyltransferase (CT), and biotin carboxyl carrier protein (BCCP) domains. The CT domain of UC consists of four subdomains, named A, B, C and D. This domain covers the A and B subdomains of the CT domain. This domain covers the whole length of KipA (kinase A) from Bacillus subtilis. It can also be found in S. cerevisiae urea amidolyase Dur1,2, which is a multifunctional biotin-dependent enzyme with domains for urea carboxylase and allophanate (urea carboxylate) hydrolase activity.	8.49919e-100

Protein sequences

>NZ_CP029189.1|WP_150261706.1|1263131_1263989_+|biotin-dependent-carboxyltransferase-family-protein
MLVVRPGALTTVQDGGRPGYAHLGVPRSGALDTAAYALANRLVGNAPGAAALETTLDGVGLRALAATTVAVTGAPCPVRISGRPVAWGAPVRLPAGAELEVGRAESGVRAYVAVRGGLAAPPVLGSRSTDLLSGLGPPVLSDGALLPVGLPGPDPVPGADACGLPGPPSQLLLPLRLGPRADWFTEASLTGLWRSAFRVSASSNRIGLRAEAGSALVRARAGELPSEGMVLGAVQVPPDGLPVVFLADHPVTGGYPVVGVVPPGPALDAAAQARPGVPLRFVRAR
>NZ_CP029189.1|WP_150256483.1|1262500_1263127_+|carboxyltransferase-domain-containing-protein
MRTLVVGGAALLVELDSADEVAALHAELLRRRDSGELGPVRDVVPAARTVLLDGVRDPAALGARIARWEVPPLAAAQGPQVTVPVRYDGPDLVEVARLWGVAPREVAGVVGAIEFRVAFCGFAPGFGYLTGLPERFHLPRRETPRTAVPAGSLALAGEYAGVYPRPSPGGWQLIGSTDAVLWDPRREPAALFAPGVRVRFTQEGGGRG
>NZ_CP029189.1|WP_150261705.1|1261736_1262504_+|5-oxoprolinase-subunit-PxpA
MIDLNADLGEGFGRWTLTDDEALLSVVTSANVACGFHAGDPSIMRRVCELAAERGVRIGAQVSYRDLAGFGRRSMDVPPGELADEVAYQIGALEVFARAAGSRVSYVKPHGALYNRTVHDAAQAAAVVAGVRLAAGSGATGGLPVLGLPGSLLLAAAGEAGLAAVPEAFADRAYTPAGTLVPRGEPDAVLHDADAVVARAVRMAAEGAVTAADGSPVRVAARSLCLHGDTPGAAGLARRVREALGTAGVRVEAFA
>NZ_CP029189.1|WP_150256482.1|1260080_1261592_-|hypothetical-protein
MSVTLPAPAKTLPSPAPGPAADEGLARRLRALACTAPLHDLDVRKANLAGEYGVYAMAEVALAAIDLVTLNMDFDTGADHEQIVARLLPRVAAQAPVRPAAEHERVARWVLENLINVGSVDRGFRAIYGTFGPDGVYVRRDYDFKLIEEVPGHGGVVYLRTTDEAVNVLVGALDTDVTSAQIAAEVKLEVLISRGRLADAQLAAEQARYRTVQYAETLRRTLDATRRNVRAVDWLQAVPDMIAEALDHVADRYRHENAILTNIRKARDEAEEPENKRRAAELVDIVKDCIRRHTQLQSRLLDAGPLFRAEQDRQAFAAPAPRSGIDLYGQLVAPLLPLPLEQASRVTTAFFASGAGLRTPVSVRVADLVEILLTPPVEREHLGAEMPEPDLIATPDDSRFSEEQLAAATELLDLPHDAPRRLSGLLAEARRSDPELPYLVALLAVHAASPAVGTAYRQGEERLLFAVDDGTQLDDPEFGGADLIVGTALLDAAGMAADRAEAS
>NZ_CP029189.1|WP_150256481.1|1258888_1259800_-|hypothetical-protein
MSDHHAEHPAWSEPDAPSAPAHAPTPAGPTPVTPADAADAARLVAFGLQPKLLPARDAEYAELLRRYREDPAFGRLADAVATGLGLVVLEVSPRAGMAVAAGEDSVFAVRMGDYARRTAADSADRFLHGLAHLAVAALAFPRPEDLADDGYIGRITVNGVDAFVRQTCRRLEERAEELGENTDPASDAPGLEAAWRVYARRSATGATKDARRLAGSTTGIVGKAAAFLTDSGFLQRTGDEAGGTYRTTPRYQLQVRDMAGSAAMAELLELGVVPVSDGSATLLPPPEGDDLDLAADAGLPFHA
>NZ_CP029189.1|WP_150256479.1|1254083_1258814_-|hypothetical-protein
MYELSRIRLYSIGPAGARYADTVLDLRGVGEPVPHPAPAQAEFFEEEPTGPPRRPAPAGVLFLENGGGKSVLLKLIFSVMLPGHRNTLGGASSGVLRKFLLADDCGHVALEWQHTQTGECVVVGKVSEWRGRQVSNDPRKFAEAWYSFRPGPGLSLDSLPVAEATSVRPPVEGASGAQGRRRTMKGFRDSLTEAGKAYPHLEVYFEEIHDRWNEHLTELGLDPELFRYQREMNADEGEAAGLFAVKKDSDFTDLLLRAVTDTRDTDGLADLVHGFGNKLGRRAELMAERDFTAGSVDLLTRIVEAAAARSRLRDVHAGAERRTRTLARRLSARAAEERGRAADLAQQVTGAAHQVTAAESARTRSAAVSAELAYRHASLALTVADKAAAAQRRELLEARTLHSAWQAAENVLRHRAAADRSARVAAAILEAERDAAPALAARATAAGELVRALHTAAEHGERLANEEEERSAALQSTGEDAHRDATAAATAAQRARSEAEHLRSRLAEVQQETAEAVRAGWLDDTAPDADPARAALAATDAEKAAVAAWDESREAAREAAEAAREAAAAESRAELTAARAADAADAAEAAHDAEHRAAASLATAPRLADLLGLPSVPASFLPHPRSQSGTAGALAGAGAQAASAGAAHGAAGQGPAPAGPAGRPEGAAGGGLTAADLDRNADDLRALLTDAVAAAERQLFELRTAAADDSRILGALGDGGLLPPGPDVLATVEYLGEHGIPALPGWRYLAQSVDPADHAAVLAARPELVDGVVITDPDTHGRAREVLSGAALLPRSTVAVGTAAALLAPLPPAGDDSGVFLVPPNPAMHDEGAADEERQALRARAAARDTEIRDLAARLGGDRELAARLASWRTGCPPGRLTELAEAAAAARMFAEETDAELAEARTVRAEADEAAADAARVREERQDAAQRARRAADALAGLAFRLRERAGWQAKLRELADDAAESEARAEVCLDRARAADEDRRAAQRAADDARRTARALRAERAEIAGAPDQLPDGDGDAPRAPLPDLREAYRAASQLYEKVGVGADLRAEQARAESDESAALAELDRLTNKVRTRAAQLLESTDGSDGPSRQAAAARAESLVQMLETRASTASEQLGRLRGEAERHAPTEGEAHTELPEELVPENVEQAQALLRTATAQLAAHSAAVESARAAHADLLRAHRTAEDGAGGFDETAAMLRDLLRDHTHQDDEHEPVPHAGTLEEARQSATEARRSLRGCSADLSAAESAVREASDILVRHANATRYEQVRTPARQQIRELPASALPEHAAAWAAAFAPRLRVLTDELAQLERNRDSIVDRLRGLVESALATLRSAQRLSQLPEGLGEWSGQEFLRIRFEEPDQATLTERLGEVIDEATRAAVKKNSSASFGEGRRDGMSLLLRGVQAALEPKGISVEILKPDAVLRAERVPVGQMGDVFSGGQLLTAAIALYCTMAALRSNDRGRDKHRHAGTLFLDNPIGRANATYLLELQRAVSDALGVQLLYTTGLFDTTALAEFPLVIRLRNDADLRAGLKYISVEEHLRPGLPQRSPEGETIHGEITATRMFRRSGAS
>NZ_CP029189.1|WP_150256477.1|1249624_1252453_-|HAMP-domain-containing-protein
MRFRGKSIRRKIVALLLVPLVSLTALWGIATVITGREALQLFDVAYIIDKVGYPVEDVARVIQKERRQTLVVLGDPRAATATAELTKRRAETDLAVEQISVSARDPKVIDELSPDSAQRLRSIVTAFQGIGAMRRSVDQNALDPTQALDLYNRLVDPCYDFLMNLHGLDNVEVDKEGRALVGISRARELLSREDAVIASALAARNVTAPDVRRVSDFVANRTLLYEFNLVTLPAEDRERFEKYWKDPGTQPLRDAEERFIAGGAANKPRSVTAAQWDEASTKVLDDLAAMNTDAGNRYQQRIEPVARDVMVQAAAAGVLGFLALTVSLVLSVRIGRDLVRDLSRLRKEAHEASGVRLPSVMRRLAAGEHVDVETEAPHLEYEKDEVGQVGQALNTLQRAAVEAAVKQADLRRGVSEVFVNLARRNQVLLHRQLTLLDTMERRTEDTEELADLFRLDHMTTRMRRHAEGLVILSGAAPSRQWRKPVQLMDVVRAAVAEVEDYERIEVRRLTRLGIVGPAVADITHLIAELLENATVFSPPHTAVQVHGERVANGFTLEIHDRGLGMTPEALLDANLRLAETPEFELSDTDRLGLFVVSRLAQRHSVKVVLQPSPYGGTTAVLFLPSALLTEAPETNGAGARFDGARAAAKPLRSDKSGHLGRAGSERSAPAAMERTPSGRQLPTGELRGPVELEAPLPAGGLDRLDGLDDPAVLDDAPTAITGRTAAGRPVMATLDDETPPNGIPRSALLGLRAADRPHNDRHADRGGSRKGGRDRESLAPTGPVRLDTQRVETQRPDGSRSQGAVPLPRRRPTPTLVADHGRRVEPRPVSVVPQPSPASTAGPDAGSDAGASAPGPGIGGLPRRVRQASLAPQLKKSPSAAPAEAAPDQAADRDAEDVRTRMSALQRGWTAGRNQHAQQKSETGAGTSAAGGPANENEGDGR
>NZ_CP029189.1|WP_030016314.1|1249190_1249628_-|roadblock/LC7-domain-containing-protein
MTAPQTGNDTRGRGSGPLNWLLDELVDRVGSIRKAVVLSGDGLPTGSSKDLTREDSEHLAAVASGFHSLAKGVGRHFDSGRVRQTVVELDEAFLFVMAAGDGSCLAVLADADSDVGQVAYEMTLMVKRVGDHLATAPRTGLPAGG
>NZ_CP029189.1|WP_150256475.1|1248712_1249180_-|DUF742-domain-containing-protein
MSDSRQDHPTGIPAGFTVDPSYSDTDPLDPDHAHWFDDDAGPVVRPYAMTRGRTSHAGQHRLDLIALVVAEPAADDPVWDMTLSPEHAHILGLCRDRPQSVAELAADLDLAVGVVRVLIGDLVDEELVHVTRPVPPAELPDESILREVIDGLRAL
>NZ_CP029189.1|WP_106971552.1|1248105_1248699_-|ATP-binding-protein
MHAVSPVEPLTLKILVAGGFGVGKTTLVSAVSEIRPLRTEERLSEPGVGVDDTGGVEGKSTTTVAMDFGRITLREDLVLYLFGTPGQDRFWFLWDELAQGSLGAVVLADTRRLADCFAAIDYFERRAIPFVVAVNCFDGADRHPVVTVRTALDLDPGVPVLLCDARDRESVKDVLVGVVEHAMSLARERRRSLSAGA
>NZ_CP029189.1|WP_150256485.1|1264257_1265655_-|HEAT-repeat-domain-containing-protein
MFEPVIAPSGTLLGLLQRGRGDGTLHALAAPRAEALEALNQCVLRDPRQDWQVENRSLYYARLYLDLAGPLGEIEAHLFGPDDLVDEEDHRTGLALSVLGHLASYGRDDALMLLRRYAASGANWAWALDELALRDDDEGLRSLAPAVLARFPATAEGGARLAAAVRDAYEPRPWFLWEETPQYGERLRAARQQGSFDRWQRQMTPSGPRPGWGVQAVFDWAADGLRRGTPLHVPAARCLAAVAQPEDRSAILAAAAGADGEAARATALHHLVLAEPDNPAVLDLIEAAADEPAVAAYERMCGPEAVERARRWVHRPDALGEAAAATLAARGGAEDAALVLGALRSTVRGAGPDTRRLFALVDGAGRLAIGCAAPVLRHIYRETASSHLRGRAARALASTDPSFAAGFAVECLWDCEETTREVAARHAETADARVAPRLRRLAADPAEEEDVQSAVRSRIAPESAV
>NZ_CP029189.1|WP_150256487.1|1265989_1266412_-|ankyrin-repeat-domain-containing-protein
MSERAAEGSGSQDVPDEDVIELATKIFDLARQGETEALTAYLDAGVPANLTNDRGDTLVMLAAYHGHADAVSALLARGAEADRANDRGQTPLAGAVFKGEEAVIRALLAGGADPEAGTPSAVDTARMFAKADLLELFGAE
>NZ_CP029189.1|WP_030031218.1|1266742_1266937_+|hypothetical-protein
MVLSISGVVLLGIICFLFFKKDGMKLTHAFVCSLFGFFLAGSAIAPSITASTASLASLLGGIKL
>NZ_CP029189.1|WP_150256489.1|1267006_1268629_+|hypothetical-protein
MARRPLPRILSSGTTSLARGRDLARTAADSATDVLHPLLVIGRGLRILAAAGRRRWSQTPKDKRGPALFLGAACVLVVALVPWGPLLAMITLMAVAAWHGRDRTPAKTGPSDAETERLGSLYEALVPYFSIPEDPSPLFAHGGNWDKAFSGYEFDEAGRITRLHIRYPAYFTDGEATSRARIETLLHAKSGRGREYLFDWDEEGNQLDLKVLAALPTGIAAQPFVTSPGETVLGFTDAGGVQRTLPVLEGDEPREVPPVIWRTGPRSGEPHLLAVGQPGSGTSTLLRSVALQALRHGGDVLVVDGGGSGSGEYSCLSGRAGVLAVECGPTGAQATLEWAAQETERRLIATHRAREAARPAPEDTRRPLWILLDQPSVLAHLSVAEGGPDPLAQLQVPLRHGRPAHVTVVVAEQFGHLELLHDAVWQHTRARVVLGPATVQQVADVLGLPPHTTPTAQVPPGRGYARLGTGPVHRLQVPATPDPYDEATHPAYRQAVLELLPERQPGPGGGRGGLTLAKPLQAQGAALDAPEFPEVRAETP
>NZ_CP029189.1|WP_150256490.1|1268680_1270183_-|aminotransferase-class-I/II-fold-pyridoxal-phosphate-dependent-enzyme
MAEWTSAVGAAQLARLITSQQERPSVPGARKPPAYRTLADGIRLLVLEGRVPVAARLPAERELAVALSLSRTTVAAAYEALRGEGFLESRRGAGSWTSVPAGNPLPARGLEPLPPESLGSMIDLGCAALPAPEPWLTKAVQGALEELPPYAHTHGDYPAGLPALRGMLADRYTEQGIPTMPEQIMVTTGAMGAIDAICSLFAGRGERIAVESPSYANILQLMRAAGARLVPVAMAGGLGGWDMDVWRQVLRDSAPRLAYVVADFHNPTGALASDEQRRAMVEAARSAGTVLVADETMVELQLDPELEMPRPVCSFDPAGSTVVTVGSASKAFWAGMRIGWVRAAPDVIRSLVAARAYADLGTPVLEQLAVNWLMRSGGWQEAVGIRREQARENRDALVAAVRRELPDWEFEVPQGGLTLWARAGGLSGSRLAEVGERVGVRVPSGPRFGVDGAFEGYVRLPFTVGGPVAEEAASRLAAAARLVGTGAGGSGAEPPRTFVA
>NZ_CP029189.1|WP_150256491.1|1270408_1271179_+|glycerophosphodiester-phosphodiesterase
MTHVRLRHPYLDHPAPIPFAHRGGAADGLENTAAAFRRAAEAGYRYFETDVHATVDGKLVAFHDSTLDRVTDGQGRIAELPWKRIREARVGGTEPLPLFEELLEEFPDARWNIDIKAESALHPLVNLIARAGIWDRVCVSSFSESRVARAQKIAGPRLATSYGVRGVVGLRLRSYAIPAALRVGAVAAQVPETQAGIRVVDRRFVRTAHERGLQVHVWTVNEPERMEALLDLGVDGIMTDRIDILRTVLDRRGAWA
>NZ_CP029189.1|WP_150256492.1|1271246_1272647_+|MFS-transporter
MSAEESSRTEEAEPGADDGRATAVAAASAAERKREQRGWYFYDFAVSVYSASVLTVFLGPYLTAVAKSAADAEGFVHPLGVPVRAGSFFAYSVSASVILAVLLMPLVGAVADRTGRKKPMLAAAAYTGAAATAGMFFLGGERYLLGGLLLVVANASLSVSMVLYNAYLPQISTPDERDTVSSRGWAFGYTAGSVMLVVNLVLYMGHESFGLSEGMAIRICLASAGLWWGAFALIPLRRLRDRAVVREPGAAPAVSGWKQLVATLKDMRRYPLTLSFLLAYLIYNDGVQTVISQASIYGSEELKLEQSTLIGAVLLVQVLAVAGALGMGRLARIYGAKRTILGSLAAWAVTLAAGYFLPARTPVWFFALAAMIGLVLGGSQALSRSLFSHLVPAGKEAEYFSAYEMSDRGLSWVGPLVFGLTYQLTGSYRDAIISLVVFFALGFVLLARVPVRRAVEAAGNPVPERI
>NZ_CP029189.1|WP_007262928.1|1272960_1273335_+|RNA-polymerase-binding-protein-RbpA
MSERALRGTRLVVTSYETDRGIDLAPRQAVEYACQNGHRFEMPFSVEAEIPPEWECKACGAMALLVDGDGPEEKKGKPARTHWDMLMERRTREELEEVLAERLAVLRSGAMNIAVHPRDSRKSA
>NZ_CP029189.1|WP_150256493.1|1273443_1274016_-|FxsA-family-protein
MTTGISTAPRRRSPARTFLPLAIAAWLILEIWLLTVVADVAGGLAVAALLAGGIVLGAVVIKRAGRRAFRNLASTFQQAQQGQQPTPQQPGQGNGLTMLAGLLLMLPGLISDVAGLVLLLPPVRAWIGRRATRSIERKMASAPAGSFGDAFQQARIHYPDGKVVQGEVVREDSPARPDGPDAAYRPPLTP
>NZ_CP029189.1|WP_150256494.1|1274093_1274918_-|glycosyltransferase
MSDGGQRTYGPLGTALVIIPTYNEAENIGLIVGRVRAAVPEAHILVADDNSPDGTGKLADELAAGDDHVHVLHRKGKEGLGAAYLAGFVWALEQGYGVIVEMDADGSHQPEELPRLLTALAGADLVLGSRWVPGGRVVNWPKSREFISRGGSTYSRLMLNLPMRDVTGGYRAFRRETLEGLGLDEVASAGYCFQVDLARRAVQKGFRVVEVPITFVEREFGDSKMSKDILVEALWRVTQWGIKAQASKLLGKDGGQGGGKGGEGGRGTEPGSGA

Crispr_ID: NZ_CP029189_3

• CRISPR_ID: NZ_CP029189_3
• CRISPR_location: 1355228-1355331
• CRISPR_type: Orphan
• Repeat_type: NA
• Spacer_info: 1 spacers

Consensus repeat of NZ_CP029189_3

Consensus_repeat	Method
CAGCCCCGCCGGCGTTTGAGGCGC	CRISPRCasFinder

spacers of NZ_CP029189_3

>3.1|1355252|56|NZ_CP029189|CRISPRCasFinder
TCTTTCAGCCCCGCCGGCGTTTGAGGCGCGGGGTCCGGGGCGGAGCCCCGATCATT

CRISPR arrays and Neighbor proteins around NZ_CP029189_3

CRISPR arrays

The CRISPR arrays of NZ_CP029189_3

>merge|NZ_CP029189|3|1355228-1355331|CRISPRCasFinder
CAGCCCCGCCGGCGTTTGAGGCGCTCTTTCAGCCCCGCCGGCGTTTGAGGCGCGGGGTCCGGGGCGGAGCCCCGATCATTCAGCCCCGCCGGCGTTTGAGGCGC

>NZ_CP029189|3|3|1355228-1355331|CRISPRCasFinder
CAGCCCCGCCGGCGTTTGAGGCGC	TCTTTCAGCCCCGCCGGCGTTTGAGGCGCGGGGTCCGGGGCGGAGCCCCGATCATT
CAGCCCCGCCGGCGTTTGAGGCGC

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP029189.1|WP_150256560.1|1360813_1361758_-|methionyl-tRNA-formyltransferase	unknown	unknown	gnl|CDD|234567
NZ_CP029189.1|WP_150261715.1|1356604_1357618_-|transcriptional-regulator	unknown	unknown	gnl|CDD|367868
NZ_CP029189.1|WP_150256561.1|1362008_1362563_+|hypothetical-protein	unknown	unknown	unknown
NZ_CP029189.1|WP_150256549.1|1347453_1347837_-|nuclear-transport-factor-2-family-protein	unknown	unknown	gnl|CDD|378915
NZ_CP029189.1|WP_150256550.1|1347850_1348447_-|hypothetical-protein	unknown	unknown	gnl|CDD|378915
NZ_CP029189.1|WP_150256563.1|1366459_1367731_-|bifunctional-phosphopantothenoylcysteine-decarboxylase/phosphopantothenate--cysteine-ligase-CoaBC	unknown	unknown	gnl|CDD|235513
NZ_CP029189.1|WP_150256562.1|1362788_1364909_-|primosomal-protein-N'	unknown	unknown	gnl|CDD|237844
NZ_CP029189.1|WP_150256554.1|1351940_1353677_+|response-regulator	unknown	unknown	gnl|CDD|273540
NZ_CP029189.1|WP_150256558.1|1357742_1358429_-|ribulose-phosphate-3-epimerase	unknown	unknown	gnl|CDD|235515
NZ_CP029189.1|WP_150256548.1|1345839_1347444_-|glucose-methanol-choline-oxidoreductase	unknown	unknown	gnl|CDD|235000
NZ_CP029189.1|WP_150256552.1|1348801_1350448_-|thiamine-pyrophosphate-binding-protein	unknown	unknown	gnl|CDD|223107
NZ_CP029189.1|WP_150256559.1|1359139_1360615_-|rRNA-cytosine-C5-methyltransferase	unknown	unknown	gnl|CDD|237857
NZ_CP029189.1|WP_150256551.1|1348329_1348764_-|nuclear-transport-factor-2-family-protein	unknown	unknown	gnl|CDD|378915
NZ_CP029189.1|WP_150256553.1|1350490_1351315_-|type-1-glutamine-amidotransferase-domain-containing-protein	unknown	unknown	gnl|CDD|153235
NZ_CP029189.1|WP_030965755.1|1365053_1366262_-|methionine-adenosyltransferase	unknown	unknown	gnl|CDD|235374
NZ_CP029189.1|WP_150256557.1|1355767_1356199_-|guanine-specific-ribonuclease-N1-and-T1	unknown	unknown	gnl|CDD|238340
NZ_CP029189.1|WP_150256547.1|1345235_1345847_-|thiamine-biosynthesis-protein-ThiJ	unknown	unknown	gnl|CDD|153228
NZ_CP029189.1|WP_150261714.1|1351677_1351944_+|UBP-type-zinc-finger-domain-containing-protein	unknown	unknown	gnl|CDD|366940
NZ_CP029189.1|WP_030012151.1|1356248_1356470_-|hypothetical-protein	unknown	unknown	gnl|CDD|273429
NZ_CP029189.1|WP_150256555.1|1353737_1354247_+|hypothetical-protein	unknown	unknown	unknown

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NZ_CP029189.1|WP_150256560.1|1360813_1361758_-|methionyl-tRNA-formyltransferase	gnl|CDD|234567	PRK00005, fmt, methionyl-tRNA formyltransferase; Reviewed.	3.86483e-166
NZ_CP029189.1|WP_150261715.1|1356604_1357618_-|transcriptional-regulator	gnl|CDD|367868	pfam04198, Sugar-bind, Putative sugar-binding domain. This probable domain is found in bacterial transcriptional regulators such as DeoR and SorC. These proteins have an amino-terminal helix-turn-helix pfam00325 that binds to DNA. This domain is probably the ligand regulator binding region. SorC is regulated by sorbose and other members of this family are likely to be regulated by other sugar substrates.	2.16161e-72
NZ_CP029189.1|WP_150256549.1|1347453_1347837_-|nuclear-transport-factor-2-family-protein	gnl|CDD|378915	pfam12680, SnoaL_2, SnoaL-like domain. This family contains a large number of proteins that share the SnoaL fold.	4.18447e-16
NZ_CP029189.1|WP_150256550.1|1347850_1348447_-|hypothetical-protein	gnl|CDD|378915	pfam12680, SnoaL_2, SnoaL-like domain. This family contains a large number of proteins that share the SnoaL fold.	4.02987e-07
NZ_CP029189.1|WP_150256563.1|1366459_1367731_-|bifunctional-phosphopantothenoylcysteine-decarboxylase/phosphopantothenate--cysteine-ligase-CoaBC	gnl|CDD|235513	PRK05579, PRK05579, bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated.	0
NZ_CP029189.1|WP_150256562.1|1362788_1364909_-|primosomal-protein-N'	gnl|CDD|237844	PRK14873, PRK14873, primosomal protein N'.	0
NZ_CP029189.1|WP_150256554.1|1351940_1353677_+|response-regulator	gnl|CDD|273540	TIGR01292, Thioredoxin_reductase, thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (pfam00070). [Energy metabolism, Electron transport].	7.81775e-77
NZ_CP029189.1|WP_150256558.1|1357742_1358429_-|ribulose-phosphate-3-epimerase	gnl|CDD|235515	PRK05581, PRK05581, ribulose-phosphate 3-epimerase; Validated.	1.56536e-130
NZ_CP029189.1|WP_150256548.1|1345839_1347444_-|glucose-methanol-choline-oxidoreductase	gnl|CDD|235000	PRK02106, PRK02106, choline dehydrogenase; Validated.	1.28198e-169
NZ_CP029189.1|WP_150256552.1|1348801_1350448_-|thiamine-pyrophosphate-binding-protein	gnl|CDD|223107	COG0028, IlvB, Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] [Amino acid transport and metabolism / Coenzyme metabolism].	1.01231e-118
NZ_CP029189.1|WP_150256559.1|1359139_1360615_-|rRNA-cytosine-C5-methyltransferase	gnl|CDD|237857	PRK14902, PRK14902, 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB.	5.31244e-94
NZ_CP029189.1|WP_150256551.1|1348329_1348764_-|nuclear-transport-factor-2-family-protein	gnl|CDD|378915	pfam12680, SnoaL_2, SnoaL-like domain. This family contains a large number of proteins that share the SnoaL fold.	5.18817e-06
NZ_CP029189.1|WP_150256553.1|1350490_1351315_-|type-1-glutamine-amidotransferase-domain-containing-protein	gnl|CDD|153235	cd03141, GATase1_Hsp31_like, Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Escherichia coli Hsp31 protein. Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Escherichia coli Hsp31 protein (EcHsp31). This group includes EcHsp31 and Saccharomyces cerevisiae Ydr533c protein. EcHsp31 has chaperone activity. Ydr533c is upregulated in response to various stress conditions along with the heat shock family. EcHsp31 coordinates a metal ion using a 2-His-1-carboxylate motif present in various ions that use iron as a cofactor such as Carboxypeptidase A. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with a typical GATase1 domain, a reactive Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For EcHsp31, this Cys together with a different His and, an Asp (rather than a Glu) residue form a different catalytic triad from the typical GATase1 domain. For Ydr533c a catalytic triad forms from the conserved Cys together with a different His and Glu from that of the typical GATase1domain. Ydr533c protein and EcHsp31 are homodimers.	1.68388e-53
NZ_CP029189.1|WP_030965755.1|1365053_1366262_-|methionine-adenosyltransferase	gnl|CDD|235374	PRK05250, PRK05250, S-adenosylmethionine synthetase; Validated.	0
NZ_CP029189.1|WP_150256557.1|1355767_1356199_-|guanine-specific-ribonuclease-N1-and-T1	gnl|CDD|238340	cd00607, RNase_Sa, RNase_Sa. Ribonucleases first isolated from Streptomyces aureofaciens. In general, ribonucleases cleave phosphodiester bonds in RNA and are essential for both non-specific RNA degradation and for numerous forms of RNA processing. RNAse Sa is a guanylate specific endoribonuclease which belongs to the superfamily of microbial ribonucleases. Typical of this sub-family, the enzyme hydrolyses the phosphodiester bonds of RNA at the 3' oxygen end of guanosine residues to yield oligonucleotides with the guanosine-2',3'-cyclophosphate at the 3' end and the hydroxyl group at the 5' end. The terminal guanosine-2,3'-cyclophosphate is hydrolysed by guanyl RNAses to give guanosine-3'-phosphate.	2.35109e-40
NZ_CP029189.1|WP_150256547.1|1345235_1345847_-|thiamine-biosynthesis-protein-ThiJ	gnl|CDD|153228	cd03134, GATase1_PfpI_like, A type 1 glutamine amidotransferase (GATase1)-like domain found in PfpI from Pyrococcus furiosus. A type 1 glutamine amidotransferase (GATase1)-like domain found in PfpI from Pyrococcus furiosus. This group includes proteins similar to PfpI from P. furiosus. and PH1704 from Pyrococcus horikoshii. These enzymes are ATP-independent intracellular proteases and may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For PH1704, it is believed that this Cys together with a different His in one monomer and Glu (from an adjacent monomer) forms a different catalytic triad from the typical GATase1domain. PfpI is homooligomeric. Protease activity is only found for oligomeric forms of PH1704.	6.81313e-29
NZ_CP029189.1|WP_150261714.1|1351677_1351944_+|UBP-type-zinc-finger-domain-containing-protein	gnl|CDD|366940	pfam02148, zf-UBP, Zn-finger in ubiquitin-hydrolases and other protein.	1.83085e-10
NZ_CP029189.1|WP_030012151.1|1356248_1356470_-|hypothetical-protein	gnl|CDD|273429	TIGR01073, ATP-dependent_DNA_helicase_PcrA, ATP-dependent DNA helicase PcrA. Designed to identify pcrA members of the uvrD/rep subfamily. [DNA metabolism, DNA replication, recombination, and repair].	3.19834e-05

Protein sequences

>NZ_CP029189.1|WP_150256555.1|1353737_1354247_+|hypothetical-protein
MITAEQSEQLRAWFAERLPVDVYESLDSVTLDREEITVVGVIPAAESVKEFRERTREQRIEVAREAEELYRRKVAWGVRVGEETTLFTHLAVPVMTRLRQSERQVLDTLVAGGVARSRADALAWCVRLVGRNTDEWLTELRDSLDKVQRVRAQGPDISEPTDSMKSDSD
>NZ_CP029189.1|WP_150256554.1|1351940_1353677_+|response-regulator
MSAAPESSAATASASGPAAAAAERAEHRKPVILAVDDDPQVLRAVRRDLRSAYGDRYRVLGASSAADALKILDSLDERGHDPALFLVDQRMPDVTGVEFLLEAVSRFPDARRVLLTAYAETDAAITAINRVRLDYYLLKPWDPPHERLFPVLDDLLSDWLATYRPAYDGIIVAGHLVSPGTHAVRDFFTRNGQPFRFLNVERDPEALTLLAAQPDGALPLVRFPDGSVLSAPTDTQLAQRLGLATTASRPHYECVIVGAGPAGLAAGVYSASEGLSTLMLDSRAPGGQAGTSSLIENYLGFPSGLSGGDLTRRATIQASRFGAEILHPVEVVSLTRDDPAKILTLADGTEISAETVLLATGVSYNRLDAPGADRFEGAGLYYGAATTESSACISQHVFIVGGANSAGQAAVHFAKYAARVTILVRAASLDASMSRYLIDEIDRTPNIEVMVRTTVVRLDGDEHLERLTLHDADTGEDTEIPARFMFTFIGARPHTDWLAGVVERDEYGFVLTGSDLISNGGELPAEWSLERAPYPLETSVPGVFAAGDVRAHSVKRVASGVGEGAMAVSLIHRYRSMG
>NZ_CP029189.1|WP_150261714.1|1351677_1351944_+|UBP-type-zinc-finger-domain-containing-protein
MDLLCTHIDQIRPVKPTAVGCEECLASGDTWVHLRLCLSCGHVGCCDSSRNRHATRHYRTTEHAIAASHEPGEDWAWCYADQLMLDPA
>NZ_CP029189.1|WP_150256553.1|1350490_1351315_-|type-1-glutamine-amidotransferase-domain-containing-protein
MSRKILVIVSEHGYWAEELIGPVSKFDERGYEVVFATPTGKRAHALPPSLDANYIDPPLGRSVTTEENARLGREFEQSSRLDSPLDIEAWVPERPYTSDEGYLPKLEQYHRDLDKLDADIAGYDAILIVGGSGPIADLANNERVHALILAFEKAGKVVAAECYGVACLAFARDWGDRKSIIWGKHVTGHCKEYDYKDGTGFLGTDFNMGPPPYPLEYILRDATGPRGAYHGNFGKPVSVIVDFPFVTGRSTPDSYLTGQKIVEVLEDGLTRYGW
>NZ_CP029189.1|WP_150256552.1|1348801_1350448_-|thiamine-pyrophosphate-binding-protein
MEATPGRERLIEQFKADGLNVMFGNPGTVEQGFLDAVDAAEDFHYVLALQETVAAGIADGYARATGGAALLQLHSGVGLGNGIGMLYQSLRGHTPLVVVAGDAGVRYDAMDAQMACDLVAMARPVTKYATRVTDPRSVLRTVRRAVKIALTPPRGPVFVALPMDVLDELNSEPVLPSTEVLTDVAPSPASVGRAAALLASAERPVILVGDGVALSGAQAELVAVAELLGADVYEVDSSEVNIAASHPLRRGQTGHMFGPHSKELVGDADGVLIVGTYVFPEVFPELESPFRAGAKVVHIDLNAYEIAKNHPVDLGLAADPRQALRALAGVLERQLTPQRRAAAAARIDVRIRERVREVRQTGPETDDGTPMAVFLRTLAERTGGDLIVFDEALTTSPLVTRYLPAERPGDYHLTRGGSLGVGFPGAVGAKLARPERLVVGFAGDGGSMYTYQALWTAARHGIDAKFVVCNNRKYRLLDDNIAQYWRERDIPEHGFPHSFDLSHPEIDFAGLARSLGAGGMRVEKPDEAVAAVGRMLSHPGPFLVDVQI
>NZ_CP029189.1|WP_150256551.1|1348329_1348764_-|nuclear-transport-factor-2-family-protein
MPAERQLTEDAIRSFAENWYVALDQHVGLDDVLALITEDLEFKVPEDTFLGHEGFGRWYAAVTHRFFDEVHTVTKVEPVIEGDRAVVRVLVNWQAKIWDPPAARSQWLGFDADQTWTVVAGPDGPLIRQYTVNDLAPMPGSGSL
>NZ_CP029189.1|WP_150256550.1|1347850_1348447_-|hypothetical-protein
MAGLRRRPDLDGRGRSGRTADQAVHRQRPGADARFRLALSAGEGEATMTEVTRERVEAAYAALGSGDRARILDYYSEDLRWLVPGGHPLAGWYESLDAFLELMGQTHKLTGGTFRMDIQAVLVGEDCSADVCRNVALRDGADETSTSPYERMDYPVFHFMRWRGGRIVEGRDGLFGDSATAFSQFWAPFGPDGTRRDR
>NZ_CP029189.1|WP_150256549.1|1347453_1347837_-|nuclear-transport-factor-2-family-protein
MDTHESHTEILRKYYEYANAGDWDRWCDLFADDQVMDEQLAGHIEGLEVLRSMMKGMGTMYRVFRNEPVHFLVDGEKAAAVSHLTAVSASGEAIEAEVMNFFRIVDGKIAYMANYHDTVPFQVLGQG
>NZ_CP029189.1|WP_150256548.1|1345839_1347444_-|glucose-methanol-choline-oxidoreductase
MSVEEYDYIVVGSGTAGSVLADRLSEDPDVSVLVLEAGGSRIPPEVDDPSSWYKLLGGPVDWGYTSTPQPGLDGRRTYEPRGKAPGGSSNLYIMMHIRGHASDFDNWAYQGAAGWSHEDVLPYFALLEGQEDATAATTGTRGPQRITNAGRHGPNPVSRAFIDAAVELGHQEIDDFNTDGPRRGLFGTGWHHIDVADGRRQGVLAAYLEPALRRANLTLRTHAQSTRLLVDGDTCTGVEYVQLQPPAEFPGRTVRDGHSTPAAPGLHTVRARREVIVAAGAIESPKLLLLSGIGHPEQLREHGIEVTAALPGVGENFHNHVLTGLMAEVTQELPPPAQNLSESALFLASRPGLPAPDLQIAFVHVPFDVIVGQDHPNTVSILPGVVRPVSRGWIRLASADPLAHPLINPNYLGDRWDLERMVQGVKIARELFATSAFSPWYKQELQPGPGYASDDDLRTFVKQKSESYHHQAGSCRMGVDDLSVVDPELRVHGVRNLRVVDASVMPAVPSGNCHTAIAMIAERAADFLKGASRV
>NZ_CP029189.1|WP_150256547.1|1345235_1345847_-|thiamine-biosynthesis-protein-ThiJ
MSDAVLREGALSGTRIAVLVESDYYEPEIFYYQRRFAEEGAEVDFLTRLWGNDSITFTGHEYRAPFTATQSLEGLSDDDLRRYAALIVPSGMVADRLRHTEDVDVLAPATELLRRAFEEPTVLKGIICHGMWLASSIPDRIRGRKVVCHNNLIGDVRNMGGEYVDEDVVVDGDLVTGRTGAHHHLFARRIIELVAAGRGRGAG
>NZ_CP029189.1|WP_150256557.1|1355767_1356199_-|guanine-specific-ribonuclease-N1-and-T1
MIFRNVPRSLLRLLGALFLCAALVGAVGCGGQGPVPAAASASASGLPGWAKGMAAVRADGLPRQARDVLALIDKGGPYPHRQDGTVFGNFEKALPEQKRGYYHEYTVRTPGERDRGARRIVTGEGGEFFYTDDHYDTFKAVLR
>NZ_CP029189.1|WP_030012151.1|1356248_1356470_-|hypothetical-protein
MTKSAVPRRHLPSSPFKAPVEQPIRQFNVGDRVTHDEHGLGRVVGIEEGIAVLVDFGSVQKRILSPYTKMAAL
>NZ_CP029189.1|WP_150261715.1|1356604_1357618_-|transcriptional-regulator
MSAGRSALRMGPAELVQAAAMARRFYLEGKSKIQIAEEFGVSRFKVARVLETALERDLVRIEIRVPAELDAERSDALRARYGLRHAVVVESPADATEDAPDPENLGAVAADLLGELVNEGDVLGLAWGRSTIHMAASLHRLPQCTVVQLTGVYDAGTAERGSVEAVRRAAQVSGGDAHPIYAPMLLPDPATAAALRSQTGIARAFEYFDKVTVAAVSIGSWEPGISTVHDMLTDEEREHYASLGVAAEMSAHLFDAEGRRVGRDLGERCITVEADRLRRIPEVVAIAGGLRKAAAIGAVLRSGLVTSLVTDTAVADYLLTESAPGLRPALDRADPDD
>NZ_CP029189.1|WP_150256558.1|1357742_1358429_-|ribulose-phosphate-3-epimerase
MAAQIYPSILSADFARLAEEAKAVEGADWLHVDVMDNHFVPNLTLGMPIVESLSRATDIPLDLHLMIEDPDRWAPQYVEAGAGSVTFHAEAAAAPVRLAREIRAKGARASMALKPATPIEQYEDILPELDMLLIMTVEPGFGGQPFLDIMLPKIRRTRELIAKHGLELWLQVDGGVSASTIERCAEAGADVFVAGSAVYGAVDPATAVRTLREQAGAAIAAAPWACDH
>NZ_CP029189.1|WP_150256559.1|1359139_1360615_-|rRNA-cytosine-C5-methyltransferase
MSEQPRQPRRKPAPAGAGGKQAKPYRRPQKDPVRMLAFEVLRAVDERDAYANLVLPPLLKKARQDEKFEARDAALATELVYGTLRRQGTYDAVIKACIDRPLREVDPPVLDVLSLGAHQLLGTRIPTHAAVSASVELARVVLGDGRAKFVNAVLRKIAAHDLDGWLERVAPPYEEDAEEHLAVYHSHPRWVVSALWDSLGGGRAGIEDLLEADNERPEVTLVARPGRSTPEELLEAVGEDSALPGRWSPYAVRMAEGGEPGALEAVRDGRAGVQDEGSQLVAMALAAAPVEGRDERWLDGCAGPGGKAALLAALAAQRGAFLLASEKQPHRARLVERSLAGNPGPYQVIAADGTRPAWLPGSFDRVLMDVPCSGLGALRRRPEARWRRRPEDLEGFAPLQRGLLREALAAVRVGGVVGYATCSPHLAETRVVVDDVLKGRGAGHSPVSAELIDARPFMSGVPALGDGPDIQLWPHLHGTDAMYLALLRRTA
>NZ_CP029189.1|WP_150256560.1|1360813_1361758_-|methionyl-tRNA-formyltransferase
MKLVFAGTPEVAVPALDALIASGRHEVAAVVTRPDAPAGRGRRLVASPVAERAEEAGIEVLKPVRPRDPDFQARLREIDPDCCPVVAYGALLPKSALDIPRHGWVNLHFSLLPAWRGAAPVQQSIIAGDQVTGASTFRIEEGLDTGPVYGILTEEIRPTDTSGDLLTRLAFAGSGLLAATMDGIEDGTLRAVEQPHDGVSHAPKITVEDARIDWTAPAMRADRVVRGCTPAPGAWTVFRGERLKLISLGLVPDRTDLAPGELAPAKNNVYAGTGSHAVELLWVQPQGKKPMRAADWARGVRIAPGERLGGADVG
>NZ_CP029189.1|WP_150256561.1|1362008_1362563_+|hypothetical-protein
MADHATHDAQARASLHLLVRDIERVRRQVDALRTLTAQLGNVYRPRRSGPSTGFVVYGRAPAPTVRLAQELRDSVETLVTAAVDFDRSLGFSWDAVGSALGVTKQAVHRRYGARRAQSAESAEPLAEGTTTRTLGPLPTVPAARSMPPQPVREEAQAAAAAAVVPGRGLAEAPRSPAFPGPRNG
>NZ_CP029189.1|WP_150256562.1|1362788_1364909_-|primosomal-protein-N'
MSSDNGESETDAGGPPEQLALIREMVAEAKAKAPKAKPRTWRGAALAEELPVARVLVNKGVLHLDRTFDYAVPAELSEAAQPGVRVRVRFGAGSHHVRGGRREGGSLIDGFIVERRAESDYEGALAALAHVVSPEVVLSPRMLALARAVADRYAGSLADVLQLALPPRNAKAEAKPSPEPLPPPAAPEPGGWERYGSGPGFLRALATGAAPRAVWTALPGPGWADELARAMAATLASGRGALAVLPDGRTAARVDDALTALLGEGRHALLTAESGPEKRYRQWLAVHRGSVRAVIGTRAAMFAPVRDLGLVAVWDDGDSSHSDDNAPFPHVREVLELRAVSDGCGFLAGSTSCTVEAAQLVESGWARPLIADRETVRACAPRIRTVGDELLARDEAARAARLPSLAWETVREGLKTGPVLVQVPRRGYVPRLACERCRTPARCTVCAGPLEAPDERDLRCGWCGRGEPSWHCEECGSFRLRAQVVGARRTAEELGRAFPAVAVRTSGRDHVLDEVPDRPALVVCTPGAEPVVAGAGYAAALLLDGWAMLTRPDLRAGEDALRRWIAAASLVRGDGQVVVVAEPTLRPVQALVRWDPVGHAVRELAERSQLGFPPVSRMAAVAGRGEAVEAFLAGAGLPPDAEILGPVPLPGRRGEGSPGERALVRVPPGSGAALAAALKSAQAARMAKGGPAADAVRVRIDPPDIG
>NZ_CP029189.1|WP_030965755.1|1365053_1366262_-|methionine-adenosyltransferase
MSRRLFTSESVTEGHPDKIADQISDTILDALLTEDPTSRVAVETLITTGLVHIAGEVTTKAYAPIAQLVRDKILEIGYDSSKKGFDGASCGVSVSIGAQSPDIAQGVDTAYEKRVEGDEDELDKQGAGDQGLMFGYACDETPELMPLPIHIAHRLSRRLSEVRKNGTIPYLRPDGKTQVTIEYDGDKAVRLDTVVVSSQHASDIDLDSLLAPDIREFVVEHVLAQLVEDGIKLDTEGYRLLVNPTGRFEIGGPMGDAGLTGRKIIIDTYGGMARHGGGAFSGKDPSKVDRSAAYAMRWVAKNVVAAGLASRCEVQVAYAIGKAEPVGLFVETFGTAKVEVQKIEDAIGEVFDLRPAAIIRDLDLLRPIYAQTAAYGHFGRELPDFTWERTDRVDALRAAAGL
>NZ_CP029189.1|WP_150256563.1|1366459_1367731_-|bifunctional-phosphopantothenoylcysteine-decarboxylase/phosphopantothenate--cysteine-ligase-CoaBC
MGTTTIRAERVAAVEGKYVVDKPKVVLGVSGGIAAYKACELLRRLTESGHDVRVVPTASSLNFVGEATWSALSGNPASTEVWESVHEVPHVRIGQSADLVVVAPATADLLAKAAHGLADDLLTNTLLTARCPVVFAPAMHTEMWEHPATQENVATLRRRGALVIEPAVGRLTGKDTGKGRLPDPEEIFEVCRRVLARGVAEADLAGRHVVISAGGTREPLDPVRFLGNRSSGKQGYALARTAVARGARVTLVSANAALADPAGVDVVRVGTAVQLREAVLKAAADADAVVMAAAVADFRPAEYASGKIKKKDGQEPAPVALVRNPDVLAELSADRARAGQVIVGFAAETDDVLANGRAKLARKGCDLLVVNEVGETRTFGSEENEAVILASDGTETQVPYGPKEALADVMWDQVAVRLEPRRA

Crispr_ID: NZ_CP029189_4

• CRISPR_ID: NZ_CP029189_4
• CRISPR_location: 1613679-1613759
• CRISPR_type: Orphan
• Repeat_type: NA
• Spacer_info: 1 spacers

Consensus repeat of NZ_CP029189_4

Consensus_repeat	Method
GGCCCGGCCGCGGAGTCCCGTGCGGGC	CRISPRCasFinder

spacers of NZ_CP029189_4

>4.1|1613706|27|NZ_CP029189|CRISPRCasFinder
CGACGCATGAGGCCCGGTACGGGTCCG

CRISPR arrays and Neighbor proteins around NZ_CP029189_4

CRISPR arrays

The CRISPR arrays of NZ_CP029189_4

>merge|NZ_CP029189|4|1613679-1613759|CRISPRCasFinder
GGCCCGGCCGCGGAGTCCCGTGCGGGCCGACGCATGAGGCCCGGTACGGGTCCGGGCCCGGCCGCGGAGTCCTGTGCGGGC

>NZ_CP029189|4|4|1613679-1613759|CRISPRCasFinder
GGCCCGGCCGCGGAGTCCCGTGCGGGC	CGACGCATGAGGCCCGGTACGGGTCCG
GGCCCGGCCGCGGAGTCCTGTGCGGGC

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP029189.1|WP_150256754.1|1608977_1611176_-|molybdopterin-dependent-oxidoreductase	unknown	unknown	gnl|CDD|239163
NZ_CP029189.1|WP_150261726.1|1604785_1605865_-|zinc-binding-dehydrogenase	unknown	unknown	gnl|CDD|176240
NZ_CP029189.1|WP_150256750.1|1602718_1603360_+|TetR-family-transcriptional-regulator	unknown	unknown	gnl|CDD|367243
NZ_CP029189.1|WP_150256762.1|1623560_1624757_+|CoA-transferase	unknown	unknown	gnl|CDD|224717
NZ_CP029189.1|WP_150256760.1|1621726_1622743_+|ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl|CDD|130256
NZ_CP029189.1|WP_150256759.1|1620927_1621653_-|TetR-family-transcriptional-regulator	unknown	unknown	gnl|CDD|367243
NZ_CP029189.1|WP_150256758.1|1619630_1620797_+|DNA-methyltransferase	unknown	unknown	gnl|CDD|380119
NZ_CP029189.1|WP_150261727.1|1611450_1612071_-|TetR-family-transcriptional-regulator	unknown	unknown	gnl|CDD|380058
NZ_CP029189.1|WP_076046471.1|1624807_1625077_-|hypothetical-protein	unknown	unknown	unknown
NZ_CP029189.1|WP_150256749.1|1601489_1602641_-|acyl-CoA-dehydrogenase	unknown	unknown	gnl|CDD|173847
NZ_CP029189.1|WP_150256761.1|1622739_1623525_+|ABC-transporter-permease	unknown	unknown	gnl|CDD|366444
NZ_CP029189.1|WP_150256753.1|1607449_1608904_-|citrate:proton-symporter	unknown	unknown	gnl|CDD|225407
NZ_CP029189.1|WP_150256752.1|1605938_1607351_-|aldehyde-dehydrogenase-family-protein	unknown	unknown	gnl|CDD|143456
NZ_CP029189.1|WP_150261729.1|1613835_1614651_-|hypothetical-protein	unknown	unknown	gnl|CDD|379208
NZ_CP029189.1|WP_150256757.1|1618536_1619286_+|UTRA-domain-containing-protein	unknown	unknown	gnl|CDD|225099
NZ_CP029189.1|WP_150256755.1|1614787_1616926_-|hypothetical-protein	unknown	unknown	gnl|CDD|379079
NZ_CP029189.1|WP_150256751.1|1603406_1604735_+|hypothetical-protein	unknown	unknown	gnl|CDD|170047
NZ_CP029189.1|WP_150256748.1|1601044_1601332_-|hypothetical-protein	unknown	unknown	gnl|CDD|226748
NZ_CP029189.1|WP_150256756.1|1617144_1618458_+|homogentisate-1,2-dioxygenase	unknown	unknown	gnl|CDD|235421
NZ_CP029189.1|WP_150261728.1|1612106_1613408_-|hypothetical-protein	unknown	unknown	unknown

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NZ_CP029189.1|WP_150256754.1|1608977_1611176_-|molybdopterin-dependent-oxidoreductase	gnl|CDD|239163	cd02762, MopB_1, The MopB_1 CD includes a group of related uncharacterized bacterial molybdopterin-binding oxidoreductase-like domains with a putative N-terminal iron-sulfur [4Fe-4S] cluster binding site and molybdopterin cofactor binding site. These members belong to the molybdopterin_binding (MopB) superfamily of proteins.	0
NZ_CP029189.1|WP_150261726.1|1604785_1605865_-|zinc-binding-dehydrogenase	gnl|CDD|176240	cd08279, Zn_ADH_class_III, Class III alcohol dehydrogenase. Glutathione-dependent formaldehyde dehydrogenases (FDHs, Class III ADH) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also known as glutathione-dependent formaldehyde dehydrogenase (FDH), which convert aldehydes to corresponding carboxylic acid and alcohol. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding.	8.24556e-154
NZ_CP029189.1|WP_150256750.1|1602718_1603360_+|TetR-family-transcriptional-regulator	gnl|CDD|367243	pfam02909, TetR_C, Tetracyclin repressor, C-terminal all-alpha domain.	1.0611e-12
NZ_CP029189.1|WP_150256762.1|1623560_1624757_+|CoA-transferase	gnl|CDD|224717	COG1804, CaiB, Predicted acyl-CoA transferases/carnitine dehydratase [Energy production and conversion].	1.48427e-129
NZ_CP029189.1|WP_150256760.1|1621726_1622743_+|ATP-binding-cassette-domain-containing-protein	gnl|CDD|130256	TIGR01188, drrA, daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc. [Transport and binding proteins, Other].	8.25617e-109
NZ_CP029189.1|WP_150256759.1|1620927_1621653_-|TetR-family-transcriptional-regulator	gnl|CDD|367243	pfam02909, TetR_C, Tetracyclin repressor, C-terminal all-alpha domain.	4.27997e-12
NZ_CP029189.1|WP_150256758.1|1619630_1620797_+|DNA-methyltransferase	gnl|CDD|380119	pfam18135, Type_ISP_C, Type ISP C-terminal specificity domain. This is the C-terminal domain of Type ISP restriction-modification enzyme LLaBIII present in Lactococcus lactis subsp. cremoris. Type ISP restriction-modification (RM) enzymes provide a potent defence against infection by foreign and bacteriophage DNA. This domain interacts extensively with DNA and is known as the target recognition domain (TRD). TRD works by recognising 6/7 base pairs of asymmetric sequence.	2.44337e-43
NZ_CP029189.1|WP_150261727.1|1611450_1612071_-|TetR-family-transcriptional-regulator	gnl|CDD|380058	pfam17928, TetR_C_22, Tetracyclin repressor-like, C-terminal domain. TetR family regulators are involved in the transcriptional control of multidrug efflux pumps, pathways for the biosynthesis of antibiotics, response to osmotic stress and toxic chemicals, control of catabolic pathways, differentiation processes, and pathogenicity. The TetR proteins identified in overm ultiple genera of bacteria and archaea share a common helix-turn-helix (HTH) structure in their DNA-binding domain. However, TetR proteins can work in different ways: they can bind a target operator directly to exert their effect (e.g. TetR binds Tet(A) gene to repress it in the absence of tetracycline), or they can be involved in complex regulatory cascades in which the TetR protein can either be modulated by another regulator or TetR can trigger the cellular response. TetR regulates the expression of the membrane-associated tetracycline resistance protein, TetA, which exports the tetracycline antibiotic out of the cell before it can attach to the ribosomes and inhibit protein synthesis. TetR blocks transcription from the genes encoding both TetA and TetR in the absence of antibiotic. The C-terminal domain is multi-helical and is interlocked in the homodimer with the helix-turn-helix (HTH) DNA-binding domain. This entry represents the C-terminal domain present the TetR Transcriptional Repressor present in sco1712 proteins from Streptomyces coelicolo which act as a regulator of antibiotic production.	7.2016e-18
NZ_CP029189.1|WP_150256749.1|1601489_1602641_-|acyl-CoA-dehydrogenase	gnl|CDD|173847	cd01158, SCAD_SBCAD, Short chain acyl-CoA dehydrogenases and eukaryotic short/branched chain acyl-CoA dehydrogenases. Short chain acyl-CoA dehydrogenase (SCAD). SCAD is a mitochondrial beta-oxidation enzyme. It catalyzes the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of SCAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. This subgroup also contains the eukaryotic short/branched chain acyl-CoA dehydrogenase(SBCAD), the bacterial butyryl-CoA dehydorgenase(BCAD) and 2-methylbutyryl-CoA dehydrogenase, which is involved in isoleucine catabolism. These enzymes are homotetramers.	8.27321e-162
NZ_CP029189.1|WP_150256761.1|1622739_1623525_+|ABC-transporter-permease	gnl|CDD|366444	pfam01061, ABC2_membrane, ABC-2 type transporter.	3.58379e-17
NZ_CP029189.1|WP_150256753.1|1607449_1608904_-|citrate:proton-symporter	gnl|CDD|225407	COG2851, CitM, H+/citrate symporter [Energy production and conversion].	6.54646e-162
NZ_CP029189.1|WP_150256752.1|1605938_1607351_-|aldehyde-dehydrogenase-family-protein	gnl|CDD|143456	cd07138, ALDH_CddD_SSP0762, Rhodococcus ruber 6-oxolauric acid dehydrogenase-like. The 6-oxolauric acid dehydrogenase (CddD) from Rhodococcus ruber SC1 which converts 6-oxolauric acid to dodecanedioic acid, and the aldehyde dehydrogenase (locus SSP0762) from Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 and other similar sequences, are included in this CD.	0
NZ_CP029189.1|WP_150261729.1|1613835_1614651_-|hypothetical-protein	gnl|CDD|379208	pfam13473, Cupredoxin_1, Cupredoxin-like domain. The cupredoxin-like fold consists of a beta-sandwich with 7 strands in 2 beta-sheets, which is arranged in a Greek-key beta-barrel.	1.13918e-06
NZ_CP029189.1|WP_150256757.1|1618536_1619286_+|UTRA-domain-containing-protein	gnl|CDD|225099	COG2188, PhnF, Transcriptional regulators [Transcription].	2.14625e-40
NZ_CP029189.1|WP_150256755.1|1614787_1616926_-|hypothetical-protein	gnl|CDD|379079	pfam13229, Beta_helix, Right handed beta helix region. This region contains a parallel beta helix region that shares some similarity with Pectate lyases.	2.13449e-09
NZ_CP029189.1|WP_150256751.1|1603406_1604735_+|hypothetical-protein	gnl|CDD|170047	PRK09687, PRK09687, putative lyase; Provisional.	1.99944e-12
NZ_CP029189.1|WP_150256748.1|1601044_1601332_-|hypothetical-protein	gnl|CDD|226748	COG4298, COG4298, Uncharacterized protein conserved in bacteria [Function unknown].	5.44822e-19
NZ_CP029189.1|WP_150256756.1|1617144_1618458_+|homogentisate-1,2-dioxygenase	gnl|CDD|235421	PRK05341, PRK05341, homogentisate 1,2-dioxygenase; Provisional.	0

Protein sequences

>NZ_CP029189.1|WP_150261728.1|1612106_1613408_-|hypothetical-protein
MVLHPADPLTSLAHGIGSQHDLPISPFYAFAGAFAALFVSFLALGLLWSTSRFRGAHSGLALPAALQRAADAAATRTTLQGLGLTAAVAVLLHLLLGPDDPAHNPAPGAVYVLLWVGLVPASLLLGPVWRLLNPLRTLHRLLRRVLPGRGPGHPLPARLGQWPAAAGLFAFTWLELVAPDPASTTTLLVAITVYATAQLLLAARFGERWFDDGDAFEAYSGLFARLSPLGRRSDGRLVLRNPFHGLDATPERPGLVATVCVLLGSTAYDGFSDNPSWINALQTSPLGRIPTATIGLLGSIALVTTLYCLCAAATRLVSGPHPGPLTAFAHSLVPIALGYLIAHYFSLLVVEGPRTVSMALGTDNAPEPVPPLGPGGLAALQVVAVVTGHVLGVVAAHDRSVRLFPPAKAVAGQLPLLALMITYTVGGLSLLLN
>NZ_CP029189.1|WP_150261727.1|1611450_1612071_-|TetR-family-transcriptional-regulator
MDPVPPVHSLRRTPVQQRSADRLARILDACAELLDETGYENLSTRAVAARAGVPIGSVYRFFGNKRAMAIALAHRNLDQYVDGIADRLTDLPATHWRPVVDAVLDEYLAMKRSVPGFALVDFGVPAPPAGEPEADPNHQVAARLTELLAAHLALTPDAALERSVLVAVEATDALIQLAFRADPAGDPGIVTETRAMMHAYLARVLD
>NZ_CP029189.1|WP_150256754.1|1608977_1611176_-|molybdopterin-dependent-oxidoreductase
MPRTALRICPLCEATCGLTLTLSDGVVTGARGDREDVFSRGFICPKGAAFGALDSDPDRLRGPLVRRDGRLREATWEEAFEAIATAVPALVREYGAQSVGVVLGNPNVHTMAGALYPPLLLKSLATRNLFTASTLDQMPKHVSSGLLFGDPFAIPVPDLDRTDFLLLLGANPVESNGSLCTAPDFPGRLKALRARGGTLVVVDPRRTRTAALADRHLAPRPGSDALLLAALAQTLIEEELADPGALEEHCDGIGELGAALGSFTPEAVAPACDLTAAEIRTLARELAAAPTAAVYARIGSCTVEFGTLASWLVDVLNILTGNLDRPGGALFPLSATAPAGRPAGPGRGFALGRWSSRVAGHPEVKGELPMAALAEEIETPGDGRIRVLLAIAANPVLSAPDGDRLDRALSGLDFMVSVDPYLNETSRHAHVVLPPPPPSQSAHFDFAFNGFAVRNQARYSPAALPLADGRMDECEIHARLILAVSGLHGAPPEAVDERVIADSLARAVTDPHSPLHGGDPQELARQLSGRTGPERRLDLMLRTGPYDLTLDDLRQAPHGIDLGPLRPRLPGVLKTRSGRIELLPDPIAAELPRLRTALAARPAALVLVGRRHLRSNNSWLHNVPALTGGSNRCTLHVHPRDADRLGLVDGGHARITADGGSLEVPVEVTDAVRSGVVSLPHGWGHDRSGSRLSVAAASPGANVNQLLDGSHIDRLSGTAVLNGFPVELMPLL
>NZ_CP029189.1|WP_150256753.1|1607449_1608904_-|citrate:proton-symporter
MLTFLGFAMIATFLVLIMMKRMSPIAALVLIPALFCVFAGKGAHFGDYVIEGVGKLAPTAAMLMFAIVYFGVMIDVGLFDPIVRGILRFCKADPMRVVVGTAVLAAIVSLDGDGSTTFMITVSAMYPLYKRLGLSLVVMTGVAATANGVMNTLPWGGPTARAATALKLDAADIFVPMIPALAAGLLFVLVLAYVLGVKERRRVGTLVLPGQAGPAAAEAELVPAAPGAPGTASLSASGSAPAPALASGEGGAAGSAAGTHGSGDAATPEDAFQGLDPDRSTLRPRLYWFNAGLTVALLTAMITEMLPIPVLFLLGAALALTVNFPHMPDQKARIAAHADNVLNVAGMVFAAAVFTGVLTGTGMVKHMADWLVGAIPEGMGPHMALVTGLLSLPLTYFMSNDGFYFGVLPVLAEAGAAHGVSPLEIARASLVGQALHMSSPLVPAVYVLVGMAKVEFGDHTRFTVKWAALTSLVVLGAGMLFGII
>NZ_CP029189.1|WP_150256752.1|1605938_1607351_-|aldehyde-dehydrogenase-family-protein
MKAHDGMYIDGAWRPAAGSDLIEVVNPAVGKVIAQVPAGTEEDVDAAVRAARAALPGWAATAPAERAALIGALRDALVARTGELTETITAELGSPLGFSKAVHVGAPIAVASSYAELASSYAFEERVGNSTVLLEPIGVVAAITPWNYPLHQVVAKVAPALAAGCTLVLKPAEDTPLTAQLFAEAVHEVGIPAGVFNLVTGTGPVAGQALAAHEGVDLVSFTGSTAVGRQIGATAGAAVKRVALELGGKSANVILPGADLVKAVAAGVGHVMNNSGQSCNALTRMLVHRDHYEEAVSLAAAAVADYPTGDPREAGVRIGPVVNAKQHERVRGFIAKGLEEGARLVAGGPDAPLEQGYFVAPTVFADVTPDMTIAQEEIFGPVLSILRYEDEEEALRIANGTVYGLGGAVWAADDETAVAFARRMDTGQVDINGGRFNVLAPFGGYKQSGVGRELGAHGLAEYLQTKSLQF
>NZ_CP029189.1|WP_150261726.1|1604785_1605865_-|zinc-binding-dehydrogenase
MVRAAVLPAVGAPLEIRDIVLPDPGPGQVRVRLAAAGVCHSDLSLTNGTMRVPVPAVLGHEGAGTVLAVGEGVTHVAPGDGVVLNWAPSCGECHHCTIGEVWLCATALTGVGAVYAHDAQGTALHPGLNVAAFAEETVVAANCVLPAPAGIPLAEAALLGCAVLTGYGAVHHSAQLRPGESVAVFGAGGVGLVALQAARIAQAGPVIAVDVSPAKEELARAAGATEFVLASDTTAKQIRALTGGQGADVAVECVGRSETIRGAWESTRRGGRTTVVGIGGKEQQVTFHSMEIFHFARTLTGCVYGNSDPARDLPVIAEHVRAGRLDLGALVTDRITLDDIPVAFDAMLAGKGGRSLVVF
>NZ_CP029189.1|WP_150256751.1|1603406_1604735_+|hypothetical-protein
MRVRALLRAADEAARGTVGAAALGVDAPGANGLSALDIAAARGSYPVVEVLSGYGARLDRVGPDGRTPLLRAVDAGAYAVAVLLQSASVPLWPKGPDGRTALELARHWHETGAENELRRRTGATESAESSEPPDPPEPSGPAEISRVMDDEYSFTRLLRLPGTDAHVRTGHTAILCRLEAVHGIRTPFAELLARAEAEGDLRGVTRDAAVSVLYGRADPETWEAAAALRTHPRPSVRHFGAEVVRCISLFDECEEGGGCIDGAGCVAEPAAGLFLAWAADEPDPDVLAVLLTALADCPALPRATLAEALLPHARHPSAVVRRSVANAFVACADEEGVLPQILGYLQDGDAEVRRSSCFAVARQRDRSREVRDCLIPLLADPSIELQIQAVRALVLLDDPRGEEALDWLGLGYTEDEPGYWFLYEAHRHLRLRKEAGAPGGRS
>NZ_CP029189.1|WP_150256750.1|1602718_1603360_+|TetR-family-transcriptional-regulator
MARPRKPLLSRDRIVEAAGALVDAEGLEAVSTRRLAAALGVSGPSLYNHFRTKDEILDAVADAVSARVDLSMFDGGQDWRAALHAWAHSYRDALADHPNIVPVLARGPGRRPAGLRLADAVFGAMTAAGWPAAQATRIGALMRYFILGSAVASFAGGFVDDRTAYDPADYPHLGQAHLLAERGREVDEGAFETGLAALLDGLALQYEALKEGA
>NZ_CP029189.1|WP_150256749.1|1601489_1602641_-|acyl-CoA-dehydrogenase
MNLELSEEQAAVRRLAREFTEREVVPYAAEWDRAESVDRAIVKKLGDLGFLGLTVPEEYGGSGGDHLAYALVTEELGRGDSAVRGIVSVSLGLVAKTVAAWGTEEQKRAWLPRLCSGDALGCFGLTEPGTGSDAGNLTTRAVRTGDAYVLDGSKMFITNGTWADVVLLFARTGGEPGHRGVSAFLVPTDTPGLTRREIHGKLGLRGQATAELVLDGVGVPASSMLGPEGKGFSVAMSALAKGRMSVAAGCVGIAQAALDAAVSYAAGREQFGRPIAHHQLVQELIADISVDVDAARLLTWRVADLIDRGQPFATESSTAKLFASEAAVRAASNALQVHGGYGYIDEYPAGKLLRDARVMTLYEGTSQIQKLLIGRARTGVSAF
>NZ_CP029189.1|WP_150256748.1|1601044_1601332_-|hypothetical-protein
MNETPVKQQSTGAYYGQAVASFGIAIGAVAVGIYNLDANGWVRAFLGIAVLYLTTSAFTLAKVIRDRQEVTQIVSRVDQARMEKIMADYDPFTPK
>NZ_CP029189.1|WP_150261729.1|1613835_1614651_-|hypothetical-protein
MLALALLLAGGAATGCGGRATTHHKPGTSHEQASGGVGTLLTATDAAGHRLREVPAQGAPEVQLTVRPDSEDGWNLQLAVTNYRFTPDSTGGAALPGAGHAHLELDGRKLARLYGPWFHLPVAQVPEGTHTLTVRLYADDHTAWAVSGKPVEGTAQLTAAAPGQPGGHGHGATPPPVGIPAPEQADRTVTITVRDGKVSPAPARTELRRGERVALRVTSDRADTLHVHGYDKELALPAGQEATLVLTADRTGLFEVETHESGLVLTQLLVR
>NZ_CP029189.1|WP_150256755.1|1614787_1616926_-|hypothetical-protein
MSWTRRFPAVPAALLAALLALLSLLVAAPAASAHEERPITLPDGSGSVPEYRTAEPDLIVCKTDRPGFERRISAFPEDLRQRNLALYERCEKSGYRHLQEAVDAVDRPGMNIAILPGLYEEEPSLPTPTGECAALKAPQSSLGYQILSYEQQVQCRHNQNLVAILGKTNLQIEGTGASRLDVVVDAKYQKLNAIRADKSNGIYFRNFTAQRTTFNSLYVLAGDGFVIDDVLTRWNDEYGFLTFASDHGLYKNCESYGNGDSGIYPGSASNINDGRGYEVPRYSIEITGCRSHHNMVGYSGTAGDSVWVHDNEFDQNMGGASMDSAFPGHPGLPQNHAKFERNLIHDNNQDYYGYVADGTCAKPPIERGYERGVVCPQISMPPGTGIITAGGNWNLYENNWVYGHRRAGFFLSAVPAFIRGEEAWSKQTDTSHHNRYAGNVMGKDKSGAARPNGMDVWWDGQGRANCWQDGPDGSTPGTVPQCGDRRGEVSGASARLVGEPVKLAQLLVCADYNVQARKLPSGCDWYGARGLERVETQLALAVAAVLLLVGGVLWWRRLRGSRLGTAATLAGLAGLVLDVAGSTMPLTATIVPALALLLLGLWWAGAGLVMRPTRPWLARLTLLLAGLTVLDAFDKAVLMIPWTPLSPAWVRALVAVVWVLWAVVASARPGVPARPAGPGGDPAGDRAPVPGDPAPALSAAAPEPPATPDPAP
>NZ_CP029189.1|WP_150256756.1|1617144_1618458_+|homogentisate-1,2-dioxygenase
MSEQARKTAEALEYLTGFGNEHSSEAVPGALPIGRNSPQRAPLGLYAEQLSGSAFTEPRTHNRRSWLYRIRPSAAHPPFARIDNGGLRSAPFTESVADPNRLRWNPLPDPAPGTDFLSGLWTLGGNGDAAQRAGMAIHLYSANADMTDRVFSDSDGELLIVPERGGLLLRTELGLLAARPGEMALIPRGVRFRVELLDADARGYVCENYGQPFELPNLGPIGANGLAAARDFQAPVAAYEDSERPTEVINKFCGNLWSATYDHSPLDVVAWHGSHVPYVYDMRRFNVLGSISYDHPDPSIFTVLTSPSDTPGLAGVDFVVFAPRWLVGEDTFRPPYFHRNVMSEYMGLIEGAYDAKAEGFVPGGGSLHNMMSAHGPDHETFERASAAELKPQKIDDGLAFMFETRWPITATAQAAGADHLQRGYDDVWQGLQRHFRA
>NZ_CP029189.1|WP_150256757.1|1618536_1619286_+|UTRA-domain-containing-protein
MTAFAPDSLVLNRKLPLWYQVSQSLRASILGRTPDASLRLPTEEQLAGHYGVSVLTMRQALKELEGEGLISRHRRRGTFIEPGALRSTPVRLLGSVDAIVAQQSGDRTTILGHGRSAVSGELLEHFPDTAEVVTYRRLRHDRESGEPTNWAENAVLPEFAEAVDLADLERWPMTKVLRDIVGVRISRITDTVEARLADPETAELLQVPLLSPILHYTGVTYDEDGRVVDVARIRYRGDRFSFTVTVDAH
>NZ_CP029189.1|WP_150256758.1|1619630_1620797_+|DNA-methyltransferase
MGGVSEDVPLLEDLMPWSVGGLRLGRDWVAAPDPAALRARWAVLAGSEGAERERLFRPSRSRRPDAGAAALPGQRSAATARFADGPGPCPAPVRVLLDPFDEQWLLPDQRLIDAARPELWRVRDEHQLFLVEAPDPLVTAHLPAGRLGRIRPLHRRPGGAEPNLAPGLAALLGARHGGPVTPEDVLCWILVAGRPGSRGYEIPLAADPGRWRAGLELGHRLLGVQLRGARGGEPPRLPGGRRPYVRSAVTQWPRELTYDAESATLGLGSGTVSPVPAGAWEYEAQGVRVLPAWFAARTAHRGPDAEGLAALGPSDWPQGWTSELLALVTTLALLAELAGERAAFEPGPGLSAEELRTAGVLPPPAWARRPASVLDHQEEGPGGQFALL
>NZ_CP029189.1|WP_150256759.1|1620927_1621653_-|TetR-family-transcriptional-regulator
MTAGGRPAEPEVIWSRPQRAGRGPRPAHSRESIASEAVRIADEEGIDAVSMRRVAAGIGAGTMSLYNYVPRKEDLYELMVDAVSGEYELPPPTGDWRADLLALARRTRALMRRHPWLPRLLSPVYGFGPNALRYLEYSLDCLAPLDAPDGEKLELVAAVNAAVATFVASELAMAERARSLPWGEAEEQRVRTAWLGSRLATGEYPRLAAALVAGGPVPGAGLDMDEVFDRTVSRLLGAWGA
>NZ_CP029189.1|WP_150256760.1|1621726_1622743_+|ATP-binding-cassette-domain-containing-protein
MTTTYAVLSEGLEKNYGEVHALRGLDLAVPEGTVCGLLGPNGAGKTTAVRILTTLTAPTGGRALVAGHDVSRDPAAVRRAIGVTGQYASVDGDLTGRENLRLFARLAGLRGRAARARADELLERFGLTEAADRTATTWSGGMKRRLDLAAGLVTRPRVLFLDEPTTGLDPAAREQIWAAVRELVEKGGEGTTVLLTTQYLEEADRLADDIVVVDRGRAVATGTPAGLKARIGARAEVTVAERGALGRAAAALDHLTGGRPLLDEERLTVGVTVLDGALAGGGGGGLTLPRIIRELDAAGVPVTDATLRPPTLDEVFLRLTQPHGTAVEAATADQEYAA
>NZ_CP029189.1|WP_150256761.1|1622739_1623525_+|ABC-transporter-permease
MSTLLSDGGAVFTRQLQKARHAPALLVLTQTMPITMLLFFGYVFGSALAMPGTEYREFLVPGLLAATAANGLMTGMFTAAQDAHRGVMDRFRTLPMSRTAVPLGQTAADLLTTGVSMVPLMLVGLAMGWRIENGLPGALGALGVLLLFRFATAWVGTYLGLLSSSEEAAGQLGSATFVLPMLSSAYLPTAGLPGWLRTVAEWNPISAVATAVRELCGNAGGAAGAGAAWPAAHPVAGALLWSGALLALFVPLATRRFARGR
>NZ_CP029189.1|WP_150256762.1|1623560_1624757_+|CoA-transferase
MTTEPLPLDGITVVAVEQAVSAPFATRQLADLGARVIKVERPDGGDFARAYDTAAHGLASHFVWANRGKESIALDLKDPRGREVLHGLLAGADVFVQNLAQGAAARLGIDSAALCARYPRLVAVDVSGYGAEGPYAHKRAYDMLVQCEAGLVSVTGTPEQPVKAGIPAADIAAAMYAFSGVLAALLRRGITGRGGRVEVSMLDALAEWMGHPLHHTMHGGEQPARTGLAHAVIAPYDAYATADGDRVLLSVQNDREWRRLAEQVLERPELADDPAYATNAARTVNREKTDAVVAGALGGLGADEAIGRLEAAGIACARLNSVAQLAGHPQLAARDRWREVDSPAGPLRALLPPIGLPGGAAPHMGAVPALGEHTGSLLRALGMADAQISDLRRDGVVG
>NZ_CP029189.1|WP_076046471.1|1624807_1625077_-|hypothetical-protein
MEQIAMRSRPPRVPAITCGSSATSSRLDRHLAVLGGPAVPHRETAEATLLMRELTSRDHTHRLRSRSARVSLFAPLRRLRRTLFGSRRS

Crispr_ID: NZ_CP029189_5

• CRISPR_ID: NZ_CP029189_5
• CRISPR_location: 1713831-1714252
• CRISPR_type: Orphan
• Repeat_type: NA
• Spacer_info: 9 spacers

Consensus repeat of NZ_CP029189_5

Consensus_repeat	Method
CCACCACGGTCGTCNNNACG	CRT

spacers of NZ_CP029189_5

>5.1|1713851|19|NZ_CP029189|CRT
ACGGGGGTACGAGGGACGG
>5.2|1713890|22|NZ_CP029189|CRT
GCGCGGGTACGACGGACGGTCG
>5.3|1713932|28|NZ_CP029189|CRT
GAAACCGCCACCACCACCGGAAGGACGG
>5.4|1713980|22|NZ_CP029189|CRT
ACGGGGGTACGACGGACGGTCG
>5.5|1714022|19|NZ_CP029189|CRT
CGGGAAGCTGGGACGGTCG
>5.6|1714061|28|NZ_CP029189|CRT
GAAACCACCGCCACCACCGGAAGGACGG
>5.7|1714109|22|NZ_CP029189|CRT
GCGCGGGTACGACGGACGGTCG
>5.8|1714151|28|NZ_CP029189|CRT
GAAACCGCCGCCACCACCAGAGGGACGG
>5.9|1714199|34|NZ_CP029189|CRT
GAAACCGCCACCACCGCTGGACGGCCGGCCACTG

CRISPR arrays and Neighbor proteins around NZ_CP029189_5

CRISPR arrays

The CRISPR arrays of NZ_CP029189_5

>merge|NZ_CP029189|5|1713831-1714252|CRT
CCACCGCGGTCGTCGTCGCGACGGGGGTACGAGGGACGGCCACCACGGTCGTCGTCACGGCGCGGGTACGACGGACGGTCGCCGCCACGGTCGTCACGACGGAAACCGCCACCACCACCGGAAGGACGGCCACCACGGTCGTCGTCACGACGGGGGTACGACGGACGGTCGCCACCACGGTCGTCACGACGCGGGAAGCTGGGACGGTCGCCGCCACGGTCGTCACGACGGAAACCACCGCCACCACCGGAAGGACGGCCACCACGGTCGTCGTCACGGCGCGGGTACGACGGACGGTCGCCACCACGGTCGTCACGACGGAAACCGCCGCCACCACCAGAGGGACGGCCACCACGGTCATCGCGACGGAAACCGCCACCACCGCTGGACGGCCGGCCACTGGCGCCACGGTCGTCACGACG

>NZ_CP029189|5|1|1713831-1714252|CRT
CCACCGCGGTCGTCGTCGCG	ACGGGGGTACGAGGGACGG
CCACCACGGTCGTCGTCACG	GCGCGGGTACGACGGACGGTCG
CCGCCACGGTCGTCACGACG	GAAACCGCCACCACCACCGGAAGGACGG
CCACCACGGTCGTCGTCACG	ACGGGGGTACGACGGACGGTCG
CCACCACGGTCGTCACGACG	CGGGAAGCTGGGACGGTCG
CCGCCACGGTCGTCACGACG	GAAACCACCGCCACCACCGGAAGGACGG
CCACCACGGTCGTCGTCACG	GCGCGGGTACGACGGACGGTCG
CCACCACGGTCGTCACGACG	GAAACCGCCGCCACCACCAGAGGGACGG
CCACCACGGTCATCGCGACG	GAAACCGCCACCACCGCTGGACGGCCGGCCACTG
GCGCCACGGTCGTCACGACG

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP029189.1|WP_150256823.1|1708404_1709472_-|iron-chelate-uptake-ABC-transporter-family-permease-subunit	unknown	unknown	gnl|CDD|182464
NZ_CP029189.1|WP_150256833.1|1724986_1725415_-|NfeD-family-protein	unknown	unknown	gnl|CDD|224501
NZ_CP029189.1|WP_150256830.1|1722490_1722994_+|HNH-endonuclease	unknown	unknown	gnl|CDD|224321
NZ_CP029189.1|WP_150256826.1|1712038_1712851_-|tetratricopeptide-repeat-protein	unknown	unknown	gnl|CDD|367841
NZ_CP029189.1|WP_150261738.1|1707289_1708345_-|iron-chelate-uptake-ABC-transporter-family-permease-subunit	unknown	unknown	gnl|CDD|227119
NZ_CP029189.1|WP_150256828.1|1720208_1720850_-|DNA-3-methyladenine-glycosylase	unknown	unknown	gnl|CDD|234840
NZ_CP029189.1|WP_150256831.1|1723054_1723825_-|TSUP-family-transporter	unknown	unknown	gnl|CDD|376667
NZ_CP029189.1|WP_030010486.1|1720959_1721742_+|sporulation-protein	unknown	unknown	gnl|CDD|369195
NZ_CP029189.1|WP_150256835.1|1727459_1728446_-|beta-propeller-fold-lactonase-family-protein	unknown	unknown	gnl|CDD|274824
NZ_CP029189.1|WP_150256821.1|1705903_1706251_+|sterol-binding-protein	unknown	unknown	gnl|CDD|379708
NZ_CP029189.1|WP_150256818.1|1703823_1704768_-|NAD-kinase	unknown	unknown	gnl|CDD|235121
NZ_CP029189.1|WP_150256825.1|1710699_1711971_+|DUF1015-family-protein	unknown	unknown	gnl|CDD|377633
NZ_CP029189.1|WP_150256824.1|1709522_1710611_-|HAD-hydrolase-like-protein	unknown	unknown	gnl|CDD|319832
NZ_CP029189.1|WP_150256822.1|1706462_1707269_-|ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl|CDD|224045
NZ_CP029189.1|WP_030720092.1|1725476_1726271_-|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl|CDD|224044
NZ_CP029189.1|WP_150256820.1|1705587_1705839_-|hypothetical-protein	unknown	unknown	unknown
NZ_CP029189.1|WP_150256832.1|1723915_1724902_-|SPFH/Band-7/PHB-domain-protein	unknown	unknown	gnl|CDD|223407
NZ_CP029189.1|WP_150256819.1|1704764_1705580_-|TlyA-family-rRNA-(cytidine-2'-O)-methyltransferase	unknown	unknown	gnl|CDD|224110
NZ_CP029189.1|WP_150256834.1|1726405_1727188_+|hypothetical-protein	unknown	unknown	unknown
NZ_CP029189.1|WP_150256829.1|1721803_1722340_+|YbhB/YbcL-family-Raf-kinase-inhibitor-like-protein	unknown	unknown	gnl|CDD|182339

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NZ_CP029189.1|WP_150256823.1|1708404_1709472_-|iron-chelate-uptake-ABC-transporter-family-permease-subunit	gnl|CDD|182464	PRK10441, PRK10441, Fe(3+)-siderophore ABC transporter permease.	1.28123e-98
NZ_CP029189.1|WP_150256833.1|1724986_1725415_-|NfeD-family-protein	gnl|CDD|224501	COG1585, COG1585, Membrane protein implicated in regulation of membrane protease activity [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion].	6.48726e-17
NZ_CP029189.1|WP_150256830.1|1722490_1722994_+|HNH-endonuclease	gnl|CDD|224321	COG1403, McrA, Restriction endonuclease [Defense mechanisms].	1.9637e-15
NZ_CP029189.1|WP_150256826.1|1712038_1712851_-|tetratricopeptide-repeat-protein	gnl|CDD|367841	pfam04147, Nop14, Nop14-like family. Emg1 and Nop14 are novel proteins whose interaction is required for the maturation of the 18S rRNA and for 40S ribosome production.	4.04738e-06
NZ_CP029189.1|WP_150261738.1|1707289_1708345_-|iron-chelate-uptake-ABC-transporter-family-permease-subunit	gnl|CDD|227119	COG4779, FepG, ABC-type enterobactin transport system, permease component [Inorganic ion transport and metabolism].	2.40096e-105
NZ_CP029189.1|WP_150256828.1|1720208_1720850_-|DNA-3-methyladenine-glycosylase	gnl|CDD|234840	PRK00802, PRK00802, DNA-3-methyladenine glycosylase.	3.32415e-84
NZ_CP029189.1|WP_150256831.1|1723054_1723825_-|TSUP-family-transporter	gnl|CDD|376667	pfam01925, TauE, Sulfite exporter TauE/SafE. This is a family of integral membrane proteins where the alignment appears to contain two duplicated modules of three transmembrane helices. The proteins are involved in the transport of anions across the cytoplasmic membrane during taurine metabolism as an exporter of sulfoacetate. This family used to be known as DUF81.	7.26217e-23
NZ_CP029189.1|WP_030010486.1|1720959_1721742_+|sporulation-protein	gnl|CDD|369195	pfam07070, Spo0M, SpoOM protein. This family consists of several bacterial SpoOM proteins which are thought to control sporulation in Bacillus subtilis.Spo0M exerts certain negative effects on sporulation and its gene expression is controlled by sigmaH.	1.65748e-106
NZ_CP029189.1|WP_150256835.1|1727459_1728446_-|beta-propeller-fold-lactonase-family-protein	gnl|CDD|274824	TIGR03866, PQQ_ABC_repeats, PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.	5.27376e-47
NZ_CP029189.1|WP_150256821.1|1705903_1706251_+|sterol-binding-protein	gnl|CDD|379708	pfam14864, Alkyl_sulf_C, Alkyl sulfatase C-terminal. This domain is found at the C-terminus of alkyl sulfatases. Together with the N-terminal catalytic domain, this domain forms a hydrophobic chute and may recruit hydrophobic substrates.	3.08189e-06
NZ_CP029189.1|WP_150256818.1|1703823_1704768_-|NAD-kinase	gnl|CDD|235121	PRK03372, ppnK, inorganic polyphosphate/ATP-NAD kinase; Provisional.	3.07253e-170
NZ_CP029189.1|WP_150256825.1|1710699_1711971_+|DUF1015-family-protein	gnl|CDD|377633	pfam06245, DUF1015, Protein of unknown function (DUF1015). Family of proteins with unknown function found in archaea and bacteria.	6.2151e-123
NZ_CP029189.1|WP_150256824.1|1709522_1710611_-|HAD-hydrolase-like-protein	gnl|CDD|319832	cd07530, HAD_Pase_UmpH-like, UmpH/NagD family phosphatase, similar to Escherichia coli UmpH UMP phosphatase/NagD nucleotide phosphatase and Mycobacterium tuberculosis Rv1692 glycerol 3-phosphate phosphatase. Escherichia coli UmpH/NagD is a ribonucleoside tri-, di-, and monophosphatase with a preference for purines, it shows peak activity with UMP and functions in UMP-degradation. It is also an effective phosphatase with AMP, GMP and CMP. Mycobacterium tuberculosis phosphatase, Rv1692 is a glycerol 3-phosphate phosphatase. Rv1692 is the final enzyme involved in glycerophospholipid recycling/catabolism. This subfamily belongs to the UmpH/NagD phosphatase family, and to the haloacid dehalogenase-like (HAD) hydrolases, a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members of this superfamily include 2-L-haloalkanoic acid dehalogenase, azetidine hydrolase, phosphonoacetaldehyde hydrolase, phosphoserine phosphatase, phosphomannomutase, P-type ATPases and many others. HAD hydrolases are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.	2.60668e-97
NZ_CP029189.1|WP_150256822.1|1706462_1707269_-|ATP-binding-cassette-domain-containing-protein	gnl|CDD|224045	COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism].	5.61519e-138
NZ_CP029189.1|WP_030720092.1|1725476_1726271_-|ABC-transporter-ATP-binding-protein	gnl|CDD|224044	COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism].	2.47538e-92
NZ_CP029189.1|WP_150256832.1|1723915_1724902_-|SPFH/Band-7/PHB-domain-protein	gnl|CDD|223407	COG0330, HflC, Membrane protease subunits, stomatin/prohibitin homologs [Posttranslational modification, protein turnover, chaperones].	1.97093e-68
NZ_CP029189.1|WP_150256819.1|1704764_1705580_-|TlyA-family-rRNA-(cytidine-2'-O)-methyltransferase	gnl|CDD|224110	COG1189, COG1189, Predicted rRNA methylase [Translation, ribosomal structure and biogenesis].	1.14724e-101
NZ_CP029189.1|WP_150256829.1|1721803_1722340_+|YbhB/YbcL-family-Raf-kinase-inhibitor-like-protein	gnl|CDD|182339	PRK10257, PRK10257, putative kinase inhibitor protein; Provisional.	3.64655e-60

Protein sequences

>NZ_CP029189.1|WP_150256826.1|1712038_1712851_-|tetratricopeptide-repeat-protein
MRQELLSLPKGLAEEVSKNLVMVARLIDDEPEQAYAYSRIALRLASRVAAVREAAGFAAYATQKYSEALAEFRAAKRMTGSVELWPVMADCERGLGRPERALAMAGEPEVQKLDKAGQVEMRLVAAGARRDQGQIEAAIVTLQSPELASNAVQPWTARLRYAYADALLAAGREDEAREWFAKTLEADKDGATDASDRLAELDGVEFVDASVDLSDLSEEEDDDEDDDEDAAEIEAAERASDVAEYYDEDDEEYEPLEQSDADSDAEGDKA
>NZ_CP029189.1|WP_150256825.1|1710699_1711971_+|DUF1015-family-protein
MTTSGTAGQGLRLTPFHGLRYVPERVGSLAAVTSPPYDVVVRPDGVDHLESADPHNIVRLILPQADTPVARNEQAARTLHEWLAKGVLSADPQPALYVYEQRRLGLLQRGIIGALALSTAEEGIVLPHEDVMPDVVTDRAGLMRATSANLEPLLLTYRGDDPDAGAARVVERTVQLAPLLSTTTEDGFRHRLWAVTDPAEIAAVTVDFSHRQALIADGHHRWATYLRLQEEHGSPTPWDFGLVLLVDTARYPLQVRAIHRMLRRLPVADALAALDGHFRVHSVDGPLPLALDALADAAERGNAFVLAGDGAFHLVTDPDPALLDRTVRHDRPEAWRRLDATVLHATLLDALWHVPDAPDEITYIHDAESTVAMAERHGGTAVLMHPVREEVVRNLARQGVTMPRKSTSFGPKPATGLVLRGLG
>NZ_CP029189.1|WP_150256824.1|1709522_1710611_-|HAD-hydrolase-like-protein
MTRQSRTSPAASEQSLHQAYDTALLDLDGVVYAGGRAIGYAVESLAAARVGGMHLAYVTNNALRTPDAVAEHLGELGIPTEAAEVITSAQAVARLIAEQVEPGSKVLVIGGDGLRVALRERGLVPVESAEEEGLAAVVQGYGGPDLPWGRFAEAAYAVNRGVPWFASNTDLTIPGARGIAPGNGAAVEVVRIATGAEPQVAGKPLPPMHRETVLRTGAERPLVVGDRLDTDIEGAFNGEVDSLLVLTGVTDAEQLLRAEPRHRPTYVDRDLRGLLTGQPEVEPCSEGFRCGGWTAVATNGGVLELREAGEGGQGGQGGQGGQGGEAGDPLDGLRALCAAAWTAAGDGVCTLDAAKALARLGL
>NZ_CP029189.1|WP_150256823.1|1708404_1709472_-|iron-chelate-uptake-ABC-transporter-family-permease-subunit
MLVESPPEPERSAAPEKGADAAVARPRHAARAAGLLAALAVLALIAVVSIAVGAKQMSLDEVWHGLFAYAGTPNDVVVRDLRIPRTLLGLMVGLGLGLSGAVMQALTRNPLAEPGILGVNAGAAAAVVSAISFFGASSLSEFVWWAFLGAAFVSVLVYVLGGSRSATPVRLALAGTAASAALVGYINAVQLMDSKALDKLRFWTVGSLASANMDTVRHVAPFLLVGAVLALVLGRPLNAMAMGDDTARALGAHLTRTRIGAMVAITLLCGAATAACGPIVFIGLMVPHLVRAFTGPDMRWVLAYSAVLSPALLLGSDIVGRVVTRPAELQVGVVTALIGGPVFIYLVRRKRMAQL
>NZ_CP029189.1|WP_150261738.1|1707289_1708345_-|iron-chelate-uptake-ABC-transporter-family-permease-subunit
MSCEGRRSGPRPLRLPGGVSLRVERRALAVGVLLTVAALAMSVVLIGTGDFEIAPWDVVQTLLGNGTPATDFIVNDLRLPRALVALLVGAALGISGAVFQSVSRNPLGSPDLLGFGYGSAVGALVVIILFKGGATEVAVGALVGGLLAGAVVYLLAYKQGIQGYRLVLVGIGASAVLVAVIQYLITKAQMYEATRAMVWLTGSLAGRDWAQVWPLLAVCAVLFPLILGQGRALRMMEMGDDAAYALGVRVERTRLLLMLAAVLLTTAASAAAGPVSFVALAAPQLARRLTRSPGGNLVNAALMGSVLLMVSDWASQRAFGADQLPVGVVTGLVGGVYLLWLLVTERKAGRI
>NZ_CP029189.1|WP_150256822.1|1706462_1707269_-|ATP-binding-cassette-domain-containing-protein
MQRLTAENVTLGYDQRVIAENLSVEIPDNSFTVIVGPNACGKSTLLRALSRMLKPSTGRVLLDGQAIGSMPAKKVAKTLGLLPQSSIAPDGITVADLVSRGRYPHQGLLRQWSAEDERIVNESMASTGVAELADRAVDELSGGQRQRVWIAMALAQQTPLLLLDEPTTYLDIQHQIDVLDLCAELHETQGRTLVAVLHDLNHAARYATHLIAMRGGKVVAEGPPAEVVTAELVEKVFGLRCQVIPDPETGTPLVVPAARKARVVARAE
>NZ_CP029189.1|WP_150256821.1|1705903_1706251_+|sterol-binding-protein
MATIQECREALDNLSGNLARADAGVRGAAAFDRSLSCHITDLDQTFTGRLDTGRIRVDAVAPGPPAAKAEIRLAMTGDDLVALVAGDLKFAKAWASGRVKLEAGFRDLLRLKSML
>NZ_CP029189.1|WP_150256820.1|1705587_1705839_-|hypothetical-protein
MTDEAAAPGAEAPAEPAGPVALGVVRTPTGHAGVDAYLARLADADHLAADGHVEVYEDVHRGLREALTALDAPPVPGPYENRS
>NZ_CP029189.1|WP_150256819.1|1704764_1705580_-|TlyA-family-rRNA-(cytidine-2'-O)-methyltransferase
MAGVARRRLDAELVRRSMARSREHAAQLIAAGRVTVGGTTATKPATQVETSAALVVRKDDSDPDYVSRGGHKLAGALAAFRPQGLAVEGRRALDAGASTGGFTDVLLRSGVAHVMAVDVGYGQLAWSLQSDDRVTVKDRTNVRELTVEQLDGVPVDLVVGDLSFISIGLVLPALVRCCAPDADLVLMVKPQFEVGKDRLGSGGVVRSPELRAEAVREVAAQAAKLGLGVLGVTASPLPGPSGNVEYFLWLRAGAPALDPADVDRAVAEGPQ
>NZ_CP029189.1|WP_150256818.1|1703823_1704768_-|NAD-kinase
MTDSAGSAGSSGSRVSGEGRTVFLLAHTGRPAAIRSAELVVQGLLRCGLGVRVMEHEAVDLPLPAEVELVTESTPGALDGCELLIVLGGDGTLLRGAEFARASGVPMLGVNLGRVGFLAEAERDDLDKVVDRVVTRSYEVEERMTLDVIVRTNGDVVHRDWALNEAAVQKVSPERMLEVVLEIDGRPVTGFGCDGIVCATPTGSTAYAFSAGGPVVWPEVEALLMVPISAHALFAKPLVTSPTSVLAVEVQSGTPHGVLWCDGRRTLELPAGARVEVRRGAVPVRLARLHHASFTDRLVAKFALPVSGWRGAPH
>NZ_CP029189.1|WP_150256828.1|1720208_1720850_-|DNA-3-methyladenine-glycosylase
MSARPDRTPLPRSFFDRPVLSVAPDLLGRTLVRRTTDGPLELRITEVEAYEGETDPGSHAYRGRTARNASMFGPPGHAYVYFIYGMWFSLNLVCGPPGRASGVLLRAGEVTVGAELAAKRRISARNPRELAKGPARLATALDVDRSLDGTDLCGGPDSPLSVLTGTPTSADLTSSGPRTGVGGAGADHPYRFWVTHDPTVSPYRPHSPRRRST
>NZ_CP029189.1|WP_030010486.1|1720959_1721742_+|sporulation-protein
MGFKKLFASLGAGGASVDTIITEPNVVPGGIVQGEVRIQGGSVEQQIEGLSVGLQARVEVEGGDQEYKQDIVFTKQRLGGAFKVQPGALHVVPFGLEIPWETPITHFGGQHLHGMNIGVSTELEIARAVDAGDLDAINVHPVPAQQAILDAFRQLGFTFRSADMERGHIRGTRQSLPFYQEIEFLPPSQYRGLHQVELTFISDGREMDVVLEMDKKPGLFTEGSDTYRCFQVGLQSYQGTDWAAYLNQWIASVGSQRNWF
>NZ_CP029189.1|WP_150256829.1|1721803_1722340_+|YbhB/YbcL-family-Raf-kinase-inhibitor-like-protein
MSEQSRAPLPHDFHPEVASFTVTSEDVAHGADLHAAQVLTGKNVSPHLRWEGFPEGTKSFAVTCFDPDAPTGSGFWHWVLFDLPVSVTELPAGAGTGDFAGLPAGAVHARNDYGTRDFGGAAPPRGERHRYVFTVYAVGQEHLGPDEDSSPAVVGFHLRFHALGRAQLVAEYEAPPAR
>NZ_CP029189.1|WP_150256830.1|1722490_1722994_+|HNH-endonuclease
MRDTLVLNASFEPLSTVTLNRAVVLVLQDKAVVEQSHPELRVRAATMDLPMPRVIRLCRYVRVPFRRHAPWSRRGVLVRDQHRCAYCGKRATTVDHVLPRAQGGGDSWLNTVASCAEDNHRKAARTPEEAGMPLLRKPFVPSPADAMLLALGVAGQEGLPEWLERSA
>NZ_CP029189.1|WP_150256831.1|1723054_1723825_-|TSUP-family-transporter
MSIWESLAVFAAGIGAGTINTIVGSGTLITFPVLLATGLPPVTANVSNTLGLVPGSISGAIGYRKELQGQRARILRLGSVSLVGGLAGAILLLTLPSESFDTIVPVLIALALVLVVLQPRLAAALRRRQDAAGGDAGHPDGGPALLGGMLLSSAYGGYFGAAQGVLYLGLMGLLLREDLQRVNAVKNVIAALVNGIAAVVFLFVAEFDWTAVVLIAVGSTIGGQIGAKVGRRLSPTVLRAVIVTVGVIAIVQLLVS
>NZ_CP029189.1|WP_150256832.1|1723915_1724902_-|SPFH/Band-7/PHB-domain-protein
MQPIIIVLIILVVLVFIALVKTIQVIPQASAAIVERFGRYTRTLNAGLNIVVPFIDSIRNRIDLREQVVPFPPQPVITQDNLVVNIDTVIYYQVTDARAATYEVASYIQAIEQLTVTTLRNIIGGMDLERTLTSREEINAALRGVLDEATGKWGIRVNRVELKAIEPPTSIQDSMEKQMRADRDKRAAILQAEGVRQSEILRAEGEKQSSILRAEGDAKAAALRAEGEAQAIRTVFESIHAGDADQKLLAYQYLQMLPKIAEGDANKLWIVPSEIGDALKGLSGAMGNFGPMGGGSGFNPQNTGKDGGGIPAARDKDAADRREQPPID
>NZ_CP029189.1|WP_150256833.1|1724986_1725415_-|NfeD-family-protein
MDIDAWVWWLIGAVGLGIPLVLTAMPEFGMFAVGAVAAAVTAALGGEVVAQVLVFVVVSVALIAVVRPIANRHRTQRPQHRSGIDALKGRSAVVLERVDGSGGRIKLAGEVWSARTLDADTSFEPGQSVDVVEIDGATAVVM
>NZ_CP029189.1|WP_030720092.1|1725476_1726271_-|ABC-transporter-ATP-binding-protein
MSDVLELVDVSVVREGRALVDQVSWSVKEGERWVILGPNGAGKTTLLNLASSYLFPTKGSATILGSTLGKVDVFELRPRIGVAGIAMADKLPKRQTVLQTVLTAAYGMTATWQEEYEDVDEQRARAFLDRLGMTEYLDRKFGTLSEGERKRTLIARALMTDPELLLLDEPAAGLDLGGREDLVRRLGRLARDPLAPSMVMVTHHVEEIAPGFTHVLMIRQGKVVTAGPIDLELTSRNLSLCFGLPLVVERNGTDRWTAQGLPLG
>NZ_CP029189.1|WP_150256834.1|1726405_1727188_+|hypothetical-protein
MLFEPRSGRLAAWGNALLAGLVSPDEAVLSIVGEDAVHRVEGLPGETGPVGLTLALGRLRALGVSGLRVALPAPGHPLGLSGPPEFNARALEAEEAVVAVGAALGLVPEVSEAGPAGDVHVSVTWHVLPVREAPPADVPSLSEAERELAEALREATEVLTRLDVAGSGPVAEAALSAYRARAEAGRETLAPGYPPRAVRVLALAQRVDLMVSLAYENGHGGAVAASEMAARAEALRPVERVARRALVAAYNSAVEERERG
>NZ_CP029189.1|WP_150256835.1|1727459_1728446_-|beta-propeller-fold-lactonase-family-protein
MTRNQEIALRTAGVLCAVAALTGLTAAPPPARPGTLVYVANLHSDTVSVVDTRSGTVVDGVPVGDGPDSAALAPDGSRLYVTNSAADTVSVVDTRTRTVVETVGVGHEPSRVTVSPDNRYVYVANVAAGTVSVISTRTLAVADTIAVGEAPLGLAVTPDGRTLYVATAGSDSVSVVGTDSGTVTATVPVGSGPTALALTPDGRHLYVSNLTSDDVSVVDTRARTETDRIPVGDQPTGIGVLPDGSRVYVADLGSDDVSVIDTRSRTVTDTIPVGDGPNGLAVGPDGCSVHVSNFDSDTLSVIDTRTGRTVTVPVGDGPTGVTTQPTPR

Crispr_ID: NZ_CP029189_6

• CRISPR_ID: NZ_CP029189_6
• CRISPR_location: 1989470-1989620
• CRISPR_type: Orphan
• Repeat_type: NA
• Spacer_info: 1 spacers

Consensus repeat of NZ_CP029189_6

Consensus_repeat	Method
CCCCGGAACACGGCCCGGGATCCGCCCCAGAGCAGCACGG	CRISPRCasFinder

spacers of NZ_CP029189_6

>6.1|1989510|71|NZ_CP029189|CRISPRCasFinder
GGGATCCGCCCCAGAGCAGCACGGGCCGAGGTCCACCCCGGAGCACCGCCCAGCGCCCGGCCCGGTATCCA

CRISPR arrays and Neighbor proteins around NZ_CP029189_6

CRISPR arrays

The CRISPR arrays of NZ_CP029189_6

>merge|NZ_CP029189|6|1989470-1989620|CRISPRCasFinder
CCCCGGAGCACGGCCCGGGATCCGCCCCGGAACACGGCCCGGGATCCGCCCCAGAGCAGCACGGGCCGAGGTCCACCCCGGAGCACCGCCCAGCGCCCGGCCCGGTATCCACCCCGGAAAACGGCCCGGGATCCGCCCCAGAGCAGCACGG

>NZ_CP029189|6|5|1989470-1989620|CRISPRCasFinder
CCCCGGAGCACGGCCCGGGATCCGCCCCGGAACACGGCCC	GGGATCCGCCCCAGAGCAGCACGGGCCGAGGTCCACCCCGGAGCACCGCCCAGCGCCCGGCCCGGTATCCA
CCCCGGAAAACGGCCCGGGATCCGCCCCAGAGCAGCACGG

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP029189.1|WP_150261767.1|1994841_1995807_-|prolipoprotein-diacylglyceryl-transferase	unknown	unknown	gnl|CDD|237284
NZ_CP029189.1|WP_150257031.1|1993770_1994586_+|CoA-ester-lyase	unknown	unknown	gnl|CDD|225184
NZ_CP029189.1|WP_150257035.1|1999297_1999507_-|tryptophan-synthase-subunit(beta)	unknown	unknown	unknown
NZ_CP029189.1|WP_150257028.1|1988200_1989346_+|ADP-ribosylglycohydrolase-family-protein	unknown	unknown	gnl|CDD|377122
NZ_CP029189.1|WP_150261765.1|1986993_1988193_+|ADP-ribosylglycohydrolase-family-protein	unknown	unknown	gnl|CDD|377122
NZ_CP029189.1|WP_150257026.1|1984110_1984842_-|hypothetical-protein	unknown	unknown	gnl|CDD|153124
NZ_CP029189.1|WP_150257033.1|1996996_1997824_-|tryptophan-synthase-subunit-alpha	unknown	unknown	gnl|CDD|237285
NZ_CP029189.1|WP_150257027.1|1985092_1986088_+|ADP-ribosylglycohydrolase-family-protein	unknown	unknown	gnl|CDD|377122
NZ_CP029189.1|WP_030012837.1|1999516_2000326_-|indole-3-glycerol-phosphate-synthase-TrpC	unknown	unknown	gnl|CDD|234710
NZ_CP029189.1|WP_150257021.1|1975791_1975992_-|DUF397-domain-containing-protein	unknown	unknown	gnl|CDD|377231
NZ_CP029189.1|WP_150257032.1|1995895_1996888_-|thioredoxin-domain-containing-protein	unknown	unknown	gnl|CDD|372611
NZ_CP029189.1|WP_150257034.1|1997820_1999092_-|tryptophan-synthase-subunit-beta	unknown	unknown	gnl|CDD|235288
NZ_CP029189.1|WP_150257024.1|1977742_1979203_-|glutamate-synthase-small-subunit	unknown	unknown	gnl|CDD|237213
NZ_CP029189.1|WP_150261766.1|1992598_1993774_+|CoA-transferase	unknown	unknown	gnl|CDD|367110
NZ_CP029189.1|WP_150257023.1|1976985_1977417_+|hypothetical-protein	unknown	unknown	unknown
NZ_CP029189.1|WP_150257030.1|1991543_1992446_+|ribokinase	unknown	unknown	gnl|CDD|238579
NZ_CP029189.1|WP_150257022.1|1975976_1976813_-|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl|CDD|238045
NZ_CP029189.1|WP_150257029.1|1989672_1991547_+|ADP-ribosylglycohydrolase-family-protein	unknown	unknown	gnl|CDD|377122
NZ_CP029189.1|WP_150261764.1|1975262_1975820_+|UTRA-domain-containing-protein	unknown	unknown	gnl|CDD|214869
NZ_CP029189.1|WP_150257025.1|1979195_1983794_-|glutamate-synthase-large-subunit	unknown	unknown	gnl|CDD|236968

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NZ_CP029189.1|WP_150261767.1|1994841_1995807_-|prolipoprotein-diacylglyceryl-transferase	gnl|CDD|237284	PRK13108, PRK13108, prolipoprotein diacylglyceryl transferase; Reviewed.	4.56549e-113
NZ_CP029189.1|WP_150257031.1|1993770_1994586_+|CoA-ester-lyase	gnl|CDD|225184	COG2301, CitE, Citrate lyase beta subunit [Carbohydrate transport and metabolism].	6.382e-52
NZ_CP029189.1|WP_150257028.1|1988200_1989346_+|ADP-ribosylglycohydrolase-family-protein	gnl|CDD|377122	pfam03747, ADP_ribosyl_GH, ADP-ribosylglycohydrolase. This family includes enzymes that ADP-ribosylations, for example ADP-ribosylarginine hydrolase EC:3.2.2.19 cleaves ADP-ribose-L-arginine. The family also includes dinitrogenase reductase activating glycohydrolase. Most surprisingly the family also includes jellyfish crystallins, these proteins appear to have lost the presumed active site residues.	6.1182e-33
NZ_CP029189.1|WP_150261765.1|1986993_1988193_+|ADP-ribosylglycohydrolase-family-protein	gnl|CDD|377122	pfam03747, ADP_ribosyl_GH, ADP-ribosylglycohydrolase. This family includes enzymes that ADP-ribosylations, for example ADP-ribosylarginine hydrolase EC:3.2.2.19 cleaves ADP-ribose-L-arginine. The family also includes dinitrogenase reductase activating glycohydrolase. Most surprisingly the family also includes jellyfish crystallins, these proteins appear to have lost the presumed active site residues.	2.58479e-19
NZ_CP029189.1|WP_150257026.1|1984110_1984842_-|hypothetical-protein	gnl|CDD|153124	cd02433, Nodulin-21_like_2, Nodulin-21 and CCC1-related protein family. Nodulin-21_like_2: This is a family of proteins closely related to nodulin-21, a plant nodule-specific protein that may be involved in symbiotic nitrogen fixation. This family is also related to CCC1, a yeast vacuole transmembrane protein that functions as an iron and manganese transporter. .	1.65152e-93
NZ_CP029189.1|WP_150257033.1|1996996_1997824_-|tryptophan-synthase-subunit-alpha	gnl|CDD|237285	PRK13111, trpA, tryptophan synthase subunit alpha; Provisional.	8.14971e-115
NZ_CP029189.1|WP_150257027.1|1985092_1986088_+|ADP-ribosylglycohydrolase-family-protein	gnl|CDD|377122	pfam03747, ADP_ribosyl_GH, ADP-ribosylglycohydrolase. This family includes enzymes that ADP-ribosylations, for example ADP-ribosylarginine hydrolase EC:3.2.2.19 cleaves ADP-ribose-L-arginine. The family also includes dinitrogenase reductase activating glycohydrolase. Most surprisingly the family also includes jellyfish crystallins, these proteins appear to have lost the presumed active site residues.	1.30964e-48
NZ_CP029189.1|WP_030012837.1|1999516_2000326_-|indole-3-glycerol-phosphate-synthase-TrpC	gnl|CDD|234710	PRK00278, trpC, indole-3-glycerol phosphate synthase TrpC.	8.69218e-125
NZ_CP029189.1|WP_150257021.1|1975791_1975992_-|DUF397-domain-containing-protein	gnl|CDD|377231	pfam04149, DUF397, Domain of unknown function (DUF397). The function of this family is unknown.	1.23164e-18
NZ_CP029189.1|WP_150257032.1|1995895_1996888_-|thioredoxin-domain-containing-protein	gnl|CDD|372611	pfam13462, Thioredoxin_4, Thioredoxin.	1.0547e-21
NZ_CP029189.1|WP_150257034.1|1997820_1999092_-|tryptophan-synthase-subunit-beta	gnl|CDD|235288	PRK04346, PRK04346, tryptophan synthase subunit beta; Validated.	0
NZ_CP029189.1|WP_150257024.1|1977742_1979203_-|glutamate-synthase-small-subunit	gnl|CDD|237213	PRK12810, gltD, glutamate synthase subunit beta; Reviewed.	0
NZ_CP029189.1|WP_150261766.1|1992598_1993774_+|CoA-transferase	gnl|CDD|367110	pfam02515, CoA_transf_3, CoA-transferase family III. CoA-transferases are found in organisms from all lines of descent. Most of these enzymes belong to two well-known enzyme families, but recent work on unusual biochemical pathways of anaerobic bacteria has revealed the existence of a third family of CoA-transferases. The members of this enzyme family differ in sequence and reaction mechanism from CoA-transferases of the other families. Currently known enzymes of the new family are a formyl-CoA: oxalate CoA-transferase, a succinyl-CoA: (R)-benzylsuccinate CoA-transferase, an (E)-cinnamoyl-CoA: (R)-phenyllactate CoA-transferase, and a butyrobetainyl-CoA: (R)-carnitine CoA-transferase. In addition, a large number of proteins of unknown or differently annotated function from Bacteria, Archaea and Eukarya apparently belong to this enzyme family. Properties and reaction mechanisms of the CoA-transferases of family III are described and compared to those of the previously known CoA-transferases.	2.97559e-137
NZ_CP029189.1|WP_150257029.1|1989672_1991547_+|ADP-ribosylglycohydrolase-family-protein	gnl|CDD|377122	pfam03747, ADP_ribosyl_GH, ADP-ribosylglycohydrolase. This family includes enzymes that ADP-ribosylations, for example ADP-ribosylarginine hydrolase EC:3.2.2.19 cleaves ADP-ribose-L-arginine. The family also includes dinitrogenase reductase activating glycohydrolase. Most surprisingly the family also includes jellyfish crystallins, these proteins appear to have lost the presumed active site residues.	2.50968e-41
NZ_CP029189.1|WP_150257030.1|1991543_1992446_+|ribokinase	gnl|CDD|238579	cd01174, ribokinase, Ribokinase catalyses the phosphorylation of ribose to ribose-5-phosphate using ATP. This reaction is the first step in the ribose metabolism. It traps ribose within the cell after uptake and also prepares the sugar for use in the synthesis of nucleotides and histidine, and for entry into the pentose phosphate pathway. Ribokinase is dimeric in solution.	2.47545e-110
NZ_CP029189.1|WP_150257022.1|1975976_1976813_-|helix-turn-helix-domain-containing-protein	gnl|CDD|238045	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators.	6.58231e-08
NZ_CP029189.1|WP_150261764.1|1975262_1975820_+|UTRA-domain-containing-protein	gnl|CDD|214869	smart00866, UTRA, The UbiC transcription regulator-associated (UTRA) domain is a conserved ligand-binding domain. It has a similar fold to HutC/FarR-like bacterial transcription factors of the GntR family. It is believed to modulate activity of bacterial transcription factors in response to binding small molecules.	2.75539e-23
NZ_CP029189.1|WP_150257025.1|1979195_1983794_-|glutamate-synthase-large-subunit	gnl|CDD|236968	PRK11750, gltB, glutamate synthase subunit alpha; Provisional.	0

Protein sequences

>NZ_CP029189.1|WP_150257028.1|1988200_1989346_+|ADP-ribosylglycohydrolase-family-protein
MTLTLEDRARGALVGAAVGDALGGPVEGWTPDQIVERHGGRVHGIVGPWHEDWRTARPIAPYHKGDGHVTDDTLMTHALVRVYEAVRNHLDAYAVAEHLVPDLMTTPRWIPELEAEALPLQRIFLAEKWMVTRLHYAHADPREAGSGNIVNCGAAMYMAPVGIANAGNPAGAYAEALDVAGAHQSSYGREAAGVFAAAVAAACVPGASAASVVDTALSLAKDGTRDAIAAVREVAAGHRDFESALAPLRAAVAPYDSVGPDYRAPSLDARRPSRLHSIEELPVALGMLLVADGRYETAVLGAVNYGRDCDSIATMAGAIAGALGGEAVVPAAWAKQVAEASRLDLHAPAEALAAVAREIFALDRSRRRSHESAFTAIAADR
>NZ_CP029189.1|WP_150261765.1|1986993_1988193_+|ADP-ribosylglycohydrolase-family-protein
MRSRARERPAELPAGATAGGPARPIEGLLLGLAAGDAAGWPAARHRASRMPEWTRRLTRELDTFAEQNATTTLPVPIALNQPPEPLRLGPSDDAEWAAFAAESVLTAAGVLLSDLSRSRRMRAAIDLAWNALASEVAAAAERAPEVESAVLPLRARISVRAGLGNLATGLRPPATGHDNPHYFDDAACVRACVLAVVHPGDARAAADLAEFDARYTQDGDGVHGARAMAAAIATALSATSADDTVDTVDAAVDAALAQLPEATEIGRNARHAVRLARTHKDGGAFAIVPTLEHEIVDHVYSYGIAAAETVPVALALATAARGRMTEAVPAAACLSRVADSAPALAGALTGALGGGDSVPAAWREACRTLSGCALPRLAGTDLVELAALLAATELTSPKG
>NZ_CP029189.1|WP_150257027.1|1985092_1986088_+|ADP-ribosylglycohydrolase-family-protein
MEPVKLIACNPQVLLERARGALLGLAVGDALGAPAENMKPSEIRAKWGRIEGFVSEDPAGTDDTEYAIFSGLLLARHGSALTVCHVERAWHHWIADLDEGPFRGAGFSERGTLENLRRGLAAPISAQHRHAWSDGLAMRAAPFGVFAAGRPAEAARLVAIDGSVSHDGEGIYGGQAVAAGVAAAMAGGSPASVISAALSVIPSDSWTARSLRRAVTAAPRGERAVRSAVVIGGYPWTDLAPEAVGLAFGAFAACRGDFPSSVLTAVNMGRDADTTAAVAGALAGALSGAAAIPAAWSSVIGPVRGSCLPSMRGYHVLDVADLLTPEYEAAR
>NZ_CP029189.1|WP_150257026.1|1984110_1984842_-|hypothetical-protein
MSIIDIEAPLHTAHRDNHTHRDVNGGWLRPAVFGAMDGLVSNLALMTGVAGGAVAPQTVVITGLAGLAAGAFSMAAGEYTSVASQRELVLAELDVERQQLLGHPIDEMEELAELYVSRGVEPQLAREVAMQLSRDPEQALEIHAREELGIDPDDLPSPMVAAVSSFGSFALGALLPVLPYLLGATVLWPAVLLALAGLFACGAVVSRVTARSWWYSGVRQLALGGAAAGVTYVLGTWIGGAIG
>NZ_CP029189.1|WP_150257025.1|1979195_1983794_-|glutamate-synthase-large-subunit
MRSASTHSATGPSTTAWSPMDGRPAQQGMYDPRNEKDACGVGFVANLTGEATHTLVEQALTVLRNLEHRGATGSEPDSGDGAGILSQVPDAFLREVAGFELPEAGGYAVGIAFLPADGTAQAAAVEQIEAIAAEENLTVLGWREVPVTPDLLGNGARATMPAFSQLFVSNGSTGIELDRKAFVLRKRAEREAGVYFPSLSARTIVYKGMLTTGQLEPFFPDLSDRRFASAVALVHSRFSTNTFPSWPLAHPYRFVAHNGEINTVKGNRNWMKARESQLASAAFGEGALDRIFPICTPDASDSASFDEVLELLHLGGRSLPHSVLMMIPEAWENHTSMDPARRAFYQYHSTMMEPWDGPACVTFTDGTQVGAVLDRNGLRPGRYWVTDDGLVVLGSEVGVLDIDPAKVVRKGRLQPGKMFLVDTAQKRIIEDDEIKNELASAAPYAEWLETGEIELSDLPEREHIVHTHASVTRRQQTFGYTEEELRVILAPMARTAGEPLGSMGTDSPIAALSERPRLLFDYFTQLFAQVTNPPLDAIREELVTSLLSSIGPQSNLLEPTAASCRSVTLTFPVIDNDELAKLIHINADGDMPGMKAATLSGLYRVSGGGEALAARIEAIRAEADAAIANGARLIVLSDRHSDAEHAPIPSLLLTSAVHHHLIATKQRTQVGLLVEAGDVREVHHVALLIGYGAAAVNPYLAMESVEDLLRAGTFLSGLEPEQAIKNLIYALGKGVLKVMSKMGISTVASYRGAQVFEAVGLNDEFVETYFNGTATKIGGAGLDVIAKEVAARHAKAYPASGIAATHRALEIGGEYQWRREGEPHLFDPETVFRLQHATRNRRYDIFKQYTARVNEQSERLMTLRGLFGFSSDREAISIDEVESVADIVKRFSTGAMSYGSISKEAHETLAVAMNQLGAKSNTGEGGEDPDRLYDPARRSSIKQVASGRFGVTSEYLVNADDIQIKMAQGAKPGEGGQLPGHKVYPWVAKTRHSTPGVGLISPPPHHDIYSIEDLAQLIHDLKNANPVARIHVKLVSEVGVGTVAAGVSKAHADVVLISGHDGGTGASPLTSLKHAGGPWELGLAETQQTLLLNGLRDRIVVQTDGQLKTGRDVVIAALLGAEEFGFATAPLVVSGCVMMRVCHLDTCPVGIATQNPVLRDRFSGKPEFVVNFFEYIAEEVREILAELGFRTIEEAVGHAEILDTTKAVTHWKAQGLDLEPLFYVPELPEGAVRHALIEQDHGLEKALDNELIELAADALNAESAESAQPVRAQVAIRNINRTVGTMLGHHVTKKFGGAGLPDNTIDLTFTGSAGQSFGAFVPKGVTLRLEGDANDYVGKGLSGGRIVVRPDRGADHLAEYSTIAGNTIGYGATGGEMFLRGRTGERFCVRNSGALVVSEGVGDHGCEYMTGGRAVVLGETGRNFAAGMSGGVAYVIDLDPHNVNVGNAGAVETVLSDTDKQWLHDVVRRHEEETGSTVAAKLLADWSVAVDRFSKIIPTTYKAVLAAKDAAELAGLSESETTEKMMEAATHG
>NZ_CP029189.1|WP_150257024.1|1977742_1979203_-|glutamate-synthase-small-subunit
MADPKGFLTTTRETACTRPVADRLKDWNEVYVPGSLLPIISKQAGRCMDCGIPFCHNGCPLGNLIPEWNDYAYRDDWAAASERLHATNNFPEFTGRLCPAPCESACVLGINQPAVTIKNVEVSIIDKAWDNGDVTPQAPERLSGKTAAVIGSGPAGLAAAQQLTRAGHTVVVYERADRIGGLLRYGIPEFKMEKVHINRRIEQMRAEGTKFRTGIEVGRDITATDLRKRFDAVVIAAGATVSRDLPVPGRELNGIHFAMEYLPLANKVQEGDFMAPPITAEGKHVVVIGGGDTGADCVGTAHRQGAASVTQLEIMPKPGEDRNANQPWPTFPMLYKVTSAHEEGGERVYSVSTTHFEGDEDGNVQALHLVEVAFEDGKLVQKPGTERVLPAQLVTLAMGFTGTDQANGLTQQFGLEMDARGNIDRDASYATNVEGVFVAGDAGRGQSLIVWAIAEGRSAARGVDRFLTGSSALPYPVKPTDRSLTV
>NZ_CP029189.1|WP_150257023.1|1976985_1977417_+|hypothetical-protein
MKQAHGRGKAAAFSTLAAALVLTLAAGTAQASPEGEIVGYPGPDGLIWVPEQTGSSGFVSGGLSSRLDTFITFGCAGGGSIEVAFHLDEHPDRDPAPFTVDCPGSDPARVTVPLGAGLRGGFGATVTASTPTTRWGATVTQPE
>NZ_CP029189.1|WP_150257022.1|1975976_1976813_-|helix-turn-helix-domain-containing-protein
MAKQKDLSGAQTPEEFAREELRRHREAAGLSQEGLGERIFTSGAYVGQMECGTRRLRPEIAELIDKVFGTKDYFTRLAKAFKSKHVEYFAEAAELERLATAIFDYGPTLVPGLLQTADYARALIRAASPTGPADRVDSLIAARMERARILDDPDSPELWVVLHEAVLRTAVGGHAVMAAQLRHISSCVRAHRITVQVVPFAAGAHGALGAYVRIMQFSDAPDAAYTEGPHAGQLLDCPALVRRHWRSYDLARAAALSPEVSLTLIESVAEEHARCAQT
>NZ_CP029189.1|WP_150257021.1|1975791_1975992_-|DUF397-domain-containing-protein
MRADVNGLSWRKSPHSNGEGGECVEVSDDLPGLVPVRDTKLAGAGPVLVFPAAAWAPFIRAVKGRA
>NZ_CP029189.1|WP_150261764.1|1975262_1975820_+|UTRA-domain-containing-protein
MSGSEWTSRSMPYLTARPPGTADAWTEEAVAAGRRGGQRILCAGEVAAPADIALMLGLAAGSTVVRRRRLIELDDEPTELTDTYYPRDIAVGTALAGAAKIRGGAVTLLAALGHVGVRVVEDVTARIPRQEDRERLRLGAGEPVLRLTRTTYDATDRPIQADVMLMPAGRQQLRYEIRLDPSRPG
>NZ_CP029189.1|WP_150257029.1|1989672_1991547_+|ADP-ribosylglycohydrolase-family-protein
MRLTWAQPEDLVGHELRQAAEDGRDPAAALRVWLAAGGHPAPDRAGASPTPAPPELRALATRLLDDLARLPPPFPTDEPRSWPDITAARETGPLPDAGGPSPDPGRAGSRTDAPRSGPDPDGPARDPRPAGRTAAHPGDATTPEPSAVPATARPHPGPDVRPAGPGPDVGRGHTGPPDPAEGPGPRSTAPTPASERPRLVDPSRVRLRPEPAPTNGERIPPRAAGAPPAAQRPHPRTGPEAAPRTAPETAPRADPQAAPRTAPQAAPRTEPEAALRTRLEAAWLGRAVGCLLGKPVEKLPLEGIRALARAAGNWPLRDWFTERGVPPEVLAAYPWNRRSAPTSLAENIDGMPEDDDLNYPLLGLLLLQRHGKGFTTADVARLWLDELPAGRTFTAERVAYRNLLLGLEPPATATHHNPFREWIGALIRADVHGWTNPGDPAAAAAQAYRDAALTHTGNGVYAALLVAAATATAATGRSDVHTALRTGLAFVPPRSRLAEAVRFGIRAAGQEADFDVVVDRLHARYGHYHWVHAVPNTALIAAALTHADGDFTRSVCRAVSGGWDTDSNGATAGALAGLLAGSPDAVPHRWTAPLKNRLSTTVPGFDGIGFDTLAHLTAQEAARS
>NZ_CP029189.1|WP_150257030.1|1991543_1992446_+|ribokinase
MTAIAVLGSTNMDLVAYVPKAPRLGETVTGRAFRTVPGGKGANQAVAAARSGGEVVMIGAVGADEFGVRLRSALTAARVDTAALRTVEGASGTAHITVDDEGGNSIVVIPGANAAVTALEAGDEARIAAACSLLLQLELPLTAVLAGARTARAHGVRTVLTPAPAQALPAELLAATDLLVPNEHEAATLTGLTDPGQAAEALLTSVPEVVITLGAAGVLYAARGREPLAVPAFRVRAMDTTAAGDTFVGALAVALGEGRPMPEALRWASAAAALSVQRPGAQDSMPTRAETDSFAAGAAS
>NZ_CP029189.1|WP_150261766.1|1992598_1993774_+|CoA-transferase
MAGLRVLDLATLFAGPLTATLLGDFGAEVVKVEHPGRPDPSRGHGPAKDGIGLWWKLLGRNKRTMTLDLSTPGGRDTLLRLATTADVVVENFRPGTLEKWGLGWPELSAANPRLVLARVTAFGQHGPYAHRPGFGTLAEAMSGFAAITGEPEGPPTLPPFGLADSIAALTCAYAVMTALAGRDRTGHGQVVDLAIVEPILTVLGPHPLWYDQLGYVQPRTGNRSMNNAPRNTYRSADGRWLAVSASAQSIAERVVRLVGRPDLISEPWFATGAGRARHADVLDDAVGGWIARHKAEEVVAAFEDAEAAVAQVYDVRDVMADPQFAALDTVTEVEDPELGPLRMQNVLFRLSGTPGGIRWAGRPHGADTDEVLTELGLTEAEITALRTEGAL
>NZ_CP029189.1|WP_150257031.1|1993770_1994586_+|CoA-ester-lyase
MILTWLYAPGDRPEVVAKALGCGADAVIVDLEDAVPASRKEYARAATADLLSDRPPLPVHVRVNALDSPWGGADLTALGGLHGLAGLRLPKISAPGQITAVAERTGGVNLHALLESAVGVERAYEIARAHPALRGLSLGEADLRADLAVSAETGLDWCRARVVVAARAAGLTPPAQSVFPDIRDLESLAVSCARGRSLGFLGRAAIHPRQLPVIERAYLPADEEVDAAVEVLSAARATPGALALPDGRFVDPAVVAAAHRTLALAARMAAR
>NZ_CP029189.1|WP_150261767.1|1994841_1995807_-|prolipoprotein-diacylglyceryl-transferase
MDLAYIPSPSTGVIHLGPIPLRGYAFCIIIGVFVAVWLGNRRWIARGGKPGTVADIAVWAVPFGLVGGRLYHVITDYQLYFGEGRDWVDAFKIWEGGLGIWGAIALGAVGAWIGCRLRGIPLPAWADALAPGIALAQACGRWGNWFNQELYGRPTDLPWAVEITAGPNRDAGTYHPTFLYESLWCIGVALLVIWADRRFKLGHGRAFALYVAAYCVGRGWIEYMRVDEAHHILGVRLNVWTSIVVFVLAVVYLVLSAKLRPGRESVVEPDREGSDGKDGDEAAPADADATAEAKPEPAEAKTPVLTKDAPAEAEAPEAGKR
>NZ_CP029189.1|WP_150257032.1|1995895_1996888_-|thioredoxin-domain-containing-protein
MSEKNDGANRDATKRSARERLLVERERQKTRDKRRRTLVVAAAVVGVLGLATVVGVIAANTDDGGSAKAGPVVAPSGATGKDALAIQAGKPEAKSSLTVWEDFRCPSCKFFEDNYRDVIHDLEAKGLLKVDYHLVTLIDRRMGGSGSLKAANAAACAQDAGKFTEYHDLLFQNQPQEIDDAFGKNAKLLELAGKVDGLDTPEFRSCVEDGTHNSWVAKSDAAFTNGGFRGTPTVLLNGKDILSDQANQVTPQKLKEQVEAAAKGSGGADAGAEGGKASPSTSSTPGSGTKAGAKASPSASRTGSGGSSGGSSSRSTGGSTGGSSTGSPDN
>NZ_CP029189.1|WP_150257033.1|1996996_1997824_-|tryptophan-synthase-subunit-alpha
MSSTHGRGNIDLLSATLAKAKSEDRAALVAYLPAGFPTVDGGIEAAKAVLAGGADVVEIGLPHSDPVLDGPVIQTADDIALRGGVKIADVLRTVREAHEATGAPILVMTYWNPIDRYGVERFTAELAAAGGAGCILPDLPVQESALWREHADKHGLATVFVVAPSSKDARLATITAAGSGFVYAASLMGVTGTRESVGNQAQDLVRRTRATTELPVCVGLGVSNAVQAKEVAGFADGVIVGSAFVKLLLDAPDLPAGLDAVRALAGELADGVRRS
>NZ_CP029189.1|WP_150257034.1|1997820_1999092_-|tryptophan-synthase-subunit-beta
MSSEFFIPDPEGHVPNAEGYFGDFGGKFIPEALVAAVDEVAVEYEKAKGDPAFAAELNDLMVNYTGRPSSLTEVPRFAEHAGGARIFLKREDLNHTGSHKINNVLGQALLTKRMGKTRVIAETGAGQHGVATATACALFGLDCTIYMGEVDTQRQALNVARMRMLGAEVIAVKSGSRTLKDAINEAFRDWVANVDRTHYLFGTVAGPHPFPAMVRDFHRVIGVEARRQILERAGRLPDAVAACVGGGSNAIGLFHAFIPDTGVRLVGFEPAGHGVETGEHAATLTAGEPGILHGSRSYVLQDEEGQITEPYSISAGLDYPGIGPEHSYLKDSGRGEYRAVTDDAAMQALRLLSRTEGIIPAIESAHALAGALDLGRELGEDGLIVVNLSGRGDKDMDTAARYFGLYDTDGEVAADEFSEGDDK
>NZ_CP029189.1|WP_150257035.1|1999297_1999507_-|tryptophan-synthase-subunit(beta)
MAHDRFSVRTRPGSRPVAVPTAHAPLARGCRPRGCRAPARRVHGRRVRYVIGSEPGQVNGMRWRRGGAL
>NZ_CP029189.1|WP_030012837.1|1999516_2000326_-|indole-3-glycerol-phosphate-synthase-TrpC
MSVLDEIIEGVREDLAERQARVSLDELKERAAKAPQAKDGVAALRGDSVKVICEVKRSSPSKGALAAIADPAGLAADYEAGGAAVISVLTEQRRFGGSLADLEAVRARVDIPILRKDFIVTAYQLWEARAYGADLVLLIVAALEQEALVSLIERAESIGLTPLVEVHDEEEVERAVAAGAKIIGVNARNLKDLKVDRSTFERVVGEIPDHIVKIAESGIRGPHDLIAYANEGADAVLVGESLVTGRDPKAAVADLVAAGAHPALRHGRS

Crispr_ID: NZ_CP029189_7

• CRISPR_ID: NZ_CP029189_7
• CRISPR_location: 2147080-2147226
• CRISPR_type: Orphan
• Repeat_type: NA
• Spacer_info: 2 spacers

Consensus repeat of NZ_CP029189_7

Consensus_repeat	Method
GTCCGGCACATCCAGCCCGGGTCCGGC	CRISPRCasFinder

spacers of NZ_CP029189_7

>7.1|2147107|33|NZ_CP029189|CRISPRCasFinder
CACCCCCGCCTCGGCCCGACACCTCCAACCTGG
>7.2|2147167|33|NZ_CP029189|CRISPRCasFinder
ACATCCAGCCCGGGTCCGGCCACCCCCTCCTCC

CRISPR arrays and Neighbor proteins around NZ_CP029189_7

CRISPR arrays

The CRISPR arrays of NZ_CP029189_7

>merge|NZ_CP029189|7|2147080-2147226|CRISPRCasFinder
CCCCGGCACCACCAGCCCGGGTCCGGCCACCCCCGCCTCGGCCCGACACCTCCAACCTGGGTCCAGCAACCCCCGCCTCGGTCCGGCACATCCAGCCCGGGTCCGGCCACCCCCTCCTCCGTCCGACACATCCAGCCCGGGTCCGGC

>NZ_CP029189|7|6|2147080-2147226|CRISPRCasFinder
CCCCGGCACCACCAGCCCGGGTCCGGC	CACCCCCGCCTCGGCCCGACACCTCCAACCTGG
GTCCAGCAACCCCCGCCTCGGTCCGGC	ACATCCAGCCCGGGTCCGGCCACCCCCTCCTCC
GTCCGACACATCCAGCCCGGGTCCGGC

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP029189.1|WP_150257132.1|2137516_2137795_-|hypothetical-protein	unknown	unknown	unknown
NZ_CP029189.1|WP_150257140.1|2149034_2150588_-|hypothetical-protein	unknown	unknown	unknown
NZ_CP029189.1|WP_150257136.1|2140788_2141994_+|bifunctional-adenosylcobinamide-kinase/adenosylcobinamide-phosphate-guanylyltransferase	unknown	unknown	gnl|CDD|376754
NZ_CP029189.1|WP_150257142.1|2152204_2154241_-|hypothetical-protein	unknown	unknown	unknown
NZ_CP029189.1|WP_150257146.1|2160643_2163328_+|pyruvate-dehydrogenase-(acetyl-transferring),-homodimeric-type	unknown	unknown	gnl|CDD|236500
NZ_CP029189.1|WP_150257135.1|2140410_2140623_-|hypothetical-protein	unknown	unknown	unknown
NZ_CP029189.1|WP_150257141.1|2150584_2152111_-|DUF3492-domain-containing-protein	unknown	unknown	gnl|CDD|340841
NZ_CP029189.1|WP_150257131.1|2136646_2137420_+|hypothetical-protein	unknown	unknown	unknown
NZ_CP029189.1|WP_150261785.1|2159799_2160423_+|FCD-domain-containing-protein	unknown	unknown	gnl|CDD|224715
NZ_CP029189.1|WP_150257137.1|2142088_2143153_+|nicotinate-nucleotide--dimethylbenzimidazole-phosphoribosyltransferase	unknown	unknown	gnl|CDD|234636
NZ_CP029189.1|WP_150257134.1|2138866_2139475_+|DUF3043-domain-containing-protein	unknown	unknown	gnl|CDD|378611
NZ_CP029189.1|WP_150257139.1|2147533_2148346_-|endo-alpha-1,4-polygalactosaminidase	unknown	unknown	gnl|CDD|377061
NZ_CP029189.1|WP_150257133.1|2137808_2138603_-|PspA/IM30-family-protein	unknown	unknown	gnl|CDD|224755
NZ_CP029189.1|WP_150257144.1|2156434_2157823_+|dihydrolipoyl-dehydrogenase	unknown	unknown	gnl|CDD|235798
NZ_CP029189.1|WP_150257145.1|2157877_2159665_+|2-oxoglutarate-dehydrogenase,-E2-component,-dihydrolipoamide-succinyltransferase	unknown	unknown	gnl|CDD|200219
NZ_CP029189.1|WP_150261783.1|2145888_2147067_+|PEP-CTERM-sorting-domain-containing-protein	unknown	unknown	gnl|CDD|226951
NZ_CP029189.1|WP_150261784.1|2148342_2149005_-|hypothetical-protein	unknown	unknown	gnl|CDD|371915
NZ_CP029189.1|WP_150257143.1|2154586_2156125_+|leucyl-aminopeptidase	unknown	unknown	gnl|CDD|234863
NZ_CP029189.1|WP_150257138.1|2143236_2145114_+|DUF2156-domain-containing-protein	unknown	unknown	gnl|CDD|235095
NZ_CP029189.1|WP_150261782.1|2139525_2140284_+|methyltransferase-domain-containing-protein	unknown	unknown	gnl|CDD|379312

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NZ_CP029189.1|WP_150261784.1|2148342_2149005_-|hypothetical-protein	gnl|CDD|371915	pfam12138, Spherulin4, Spherulation-specific family 4. This protein is found in bacteria, archaea and eukaryotes. Proteins in this family are typically between 250 and 398 amino acids in length. There is a conserved NPG sequence motif and there are two completely conserved G residues that may be functionally important. Starvation will often induce spherulation - the production of spores - and this process may involve DNA-methylation. Changes in the methylation of spherulin4 are associated with the formation of spherules, but these changes are probably transient. Methylation of the gene accompanies its transcriptional activation, and spherulin4 mRNA is only detectable in late spherulating cultures and mature spherules. It is a spherulation-specific protein.	1.04979e-34
NZ_CP029189.1|WP_150261782.1|2139525_2140284_+|methyltransferase-domain-containing-protein	gnl|CDD|379312	pfam13649, Methyltransf_25, Methyltransferase domain. This family appears to be a methyltransferase domain.	3.1871e-20
NZ_CP029189.1|WP_150257146.1|2160643_2163328_+|pyruvate-dehydrogenase-(acetyl-transferring),-homodimeric-type	gnl|CDD|236500	PRK09405, aceE, pyruvate dehydrogenase subunit E1; Reviewed.	0
NZ_CP029189.1|WP_150257138.1|2143236_2145114_+|DUF2156-domain-containing-protein	gnl|CDD|235095	PRK02983, lysS, bifunctional lysylphosphatidylglycerol synthetase/lysine--tRNA ligase LysX.	0
NZ_CP029189.1|WP_150257143.1|2154586_2156125_+|leucyl-aminopeptidase	gnl|CDD|234863	PRK00913, PRK00913, multifunctional aminopeptidase A; Provisional.	0
NZ_CP029189.1|WP_150257144.1|2156434_2157823_+|dihydrolipoyl-dehydrogenase	gnl|CDD|235798	PRK06416, PRK06416, dihydrolipoamide dehydrogenase; Reviewed.	0
NZ_CP029189.1|WP_150261785.1|2159799_2160423_+|FCD-domain-containing-protein	gnl|CDD|224715	COG1802, GntR, Transcriptional regulators [Transcription].	2.21703e-34
NZ_CP029189.1|WP_150257137.1|2142088_2143153_+|nicotinate-nucleotide--dimethylbenzimidazole-phosphoribosyltransferase	gnl|CDD|234636	PRK00105, cobT, nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase; Reviewed.	1.30424e-131
NZ_CP029189.1|WP_150257134.1|2138866_2139475_+|DUF3043-domain-containing-protein	gnl|CDD|378611	pfam11241, DUF3043, Protein of unknown function (DUF3043). Some members in this family of proteins with unknown function are annotated as membrane proteins. This cannot be confirmed.	1.42371e-63
NZ_CP029189.1|WP_150257139.1|2147533_2148346_-|endo-alpha-1,4-polygalactosaminidase	gnl|CDD|377061	pfam03537, Glyco_hydro_114, Glycoside-hydrolase family GH114. This family is recognized as a glycosyl-hydrolase family, number 114. It is endo-alpha-1,4-polygalactosaminidase, a rare enzyme. It is proposed to be TIM-barrel, the most common structure amongst the catalytic domains of glycosyl-hydrolases.	6.89696e-98
NZ_CP029189.1|WP_150257133.1|2137808_2138603_-|PspA/IM30-family-protein	gnl|CDD|224755	COG1842, PspA, Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms].	8.84093e-31
NZ_CP029189.1|WP_150257145.1|2157877_2159665_+|2-oxoglutarate-dehydrogenase,-E2-component,-dihydrolipoamide-succinyltransferase	gnl|CDD|200219	TIGR02927, putative_dihydrolipoamide_acyltransferase, 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase. This model represents an Actinobacterial clade of E2 enzyme, a component of the 2-oxoglutarate dehydrogenase complex involved in the TCA cycle. These proteins have multiple domains including the catalytic domain (pfam00198), one or two biotin domains (pfam00364) and an E3-component binding domain (pfam02817).	0
NZ_CP029189.1|WP_150261783.1|2145888_2147067_+|PEP-CTERM-sorting-domain-containing-protein	gnl|CDD|226951	COG4585, COG4585, Signal transduction histidine kinase [Signal transduction mechanisms].	7.75362e-38
NZ_CP029189.1|WP_150257141.1|2150584_2152111_-|DUF3492-domain-containing-protein	gnl|CDD|340841	cd03813, GT4-like, glycosyltransferase family 4 proteins. This family is most closely related to the GT4 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility. The members of this family are found mainly in bacteria, while some of them are also found in Archaea and eukaryotes.	1.18583e-127
NZ_CP029189.1|WP_150257136.1|2140788_2141994_+|bifunctional-adenosylcobinamide-kinase/adenosylcobinamide-phosphate-guanylyltransferase	gnl|CDD|376754	pfam02283, CobU, Cobinamide kinase / cobinamide phosphate guanyltransferase. This family is composed of a group of bifunctional cobalamin biosynthesis enzymes which display cobinamide kinase and cobinamide phosphate guanyltransferase activity. The crystal structure of the enzyme reveals the molecule to be a trimer with a propeller-like shape.	1.01247e-63

Protein sequences

>NZ_CP029189.1|WP_150261783.1|2145888_2147067_+|PEP-CTERM-sorting-domain-containing-protein
MRAHPLATDAVLAFGAFVAMVLGSFADPHGPHGPTFGTRTPEPFSLLLMLLGAAALVFRRRQPRAVLAVTCGLSLLELTTGEPRAPVAMCTVIALYTVASRTDRPTTWRIGLLTMAGLTGVAMLAGPLPWYAQENIGIFAWTGMAAAAGDAVRSRRAFVDAIRERAERAERTRDEEARRRVAEERLRIARDLHDVVAHHIALVNVQAGVAAHVMDKRPDQAKEALAHVRDASRSALNELRATVGLLRQSGDPEAPTEPAPGLAVLDELVDTFRHAGLPVDVVVQLDGTGGPLPAAVDLAAYRVIQEALTNVRKHAGPGAKAEVSVVGVGPSVEVTVLDDGGVAADAAPEPVDPGGGHGLLGMRERTGALGGSCFAGPRFGGGYRVHAILPRG
>NZ_CP029189.1|WP_150257138.1|2143236_2145114_+|DUF2156-domain-containing-protein
MGEVRLTSAETDRTAVPANGPSAGRKGTGGDPAGKAAGDARETGRETGRGSARSRRGAAFAVWYLRTVTFVNFLGAVWVSLGQDLRRHSIEDFYTPYMLTAGFASGLFTLLLAVTLGRRKRASWILNLVLSGLLALLLAYALSTHEEIREHAQNWVSLVLTAAFTGALLLSRHEFYAKGDRSNPTLASAVAAVGLLLTSLVAALLVGATNTSPLSAESSFPQRWWYGVMRLITLTPGERASEVITTPGWVDVVINVMSMLLLLAVLFAAFRSRRAVDPISEADEERLRALLARQGDRDSLGYFALRREKSVIWSPTGKAAVTYRVVGGVSLASGDPIGDPEAWPGAIDPWLAEAREHGWVPAVMGASEEAGQIYARHGLDALELGDEAIVETAEFTLEGRAMRTVRQAFNRVKRAGYTVRIRRHDDIPAGEMAELVRRADDWRDGATERGFSMALGRLGDPADGQCVMLECTDGNGELRALLSFVPWGPKGLSLDLMRRDRDSENGLMEFMVIELLERSKEIGVTQVSLNFAMFRSVFERGSRLGAGPVLRMWRSLLSFFSRWWQIESLYRANAKYRPIWEPRFMLFEKSSDLLRIGVAAGRAEGFLEAPGLPKWLHRRHLETRR
>NZ_CP029189.1|WP_150257137.1|2142088_2143153_+|nicotinate-nucleotide--dimethylbenzimidazole-phosphoribosyltransferase
MSTLNLDDFSDLIERPDGGVRRDAEERRERLAVPPGALGRLDELAEWLAAAQGRVPVRPIERPRVVLFAADHGIAAEGVSARAASTGHELVRSVLEGASPVAVLAARFGATIRIVDAGLDCDPELLPADVTGHRVRRGSGRIDVEDALTAEEAEAAVRLGMRIADEEADSGTDLVVLGDLSVGGTTVAATLVAALCGTDASVVTGRGGLPIDDLAWMRKCAAIRDALRRARPVLGDQVALLAAVGGADVAAITGFLLQCAVRRTPVILDGVVSAACGLVAQRAAFRAPDWWLAGQASGEPGQAKALDRMALNPVLDHGVTVGEGTGALLALPLVQAAAALAAELPERAVEEPTE
>NZ_CP029189.1|WP_150257136.1|2140788_2141994_+|bifunctional-adenosylcobinamide-kinase/adenosylcobinamide-phosphate-guanylyltransferase
MELTLLGTGTPEGLPRPDCPCAACAVSTGSRARAATAVLVDGALLLDLTPGAVLAGARAGHSLAGVRQVLLTHPHDGPAVELPPGLPAAGRVPDGRELAVISGHRVRAVPMDAPGTGYEVTGPDGVRLLYLPPGGAPAGVADQAGRRPYDMILMDVLGRPGALARLRASGAAGPATDVIAVHLDHDTPPGRELERRCAAAGARAVPDGTTVIVGEYRAVPELPRRTLVLGGARSGKSVEAERRLESFPEVVYVATGGTRDGDAEWARRVGLHRERRPGSWRTVETCDLVPLLAAAGPPLLIDCLALWLTDAMDRAGAWDDAVWAESGRQRLAERTAELVAAVRATRRPVVLVSNEVGSGVVPATASGRRFRDELGRLNAAVAGECEHVLLVVAGLAAVLKE
>NZ_CP029189.1|WP_150257135.1|2140410_2140623_-|hypothetical-protein
MAWTWRFETADGTETSPSVVPEEFTTQGDAESWVGEYWKDLLEGGVEQVKLSDDAGTELYTMSLRAALDA
>NZ_CP029189.1|WP_150261782.1|2139525_2140284_+|methyltransferase-domain-containing-protein
MWLEGLGGLRNAVRQELVGRQVDEQIAQRFPVGQRLRVLDVGMGQGTQALRLARAGHKVTGLEQDPGMLAVAREALAAEPEGIRDRVSLLEGDGRETGAHFLPGSFDVVLCHGVLMYVPEPDAMLAGLARMLAPGGLLSLLVRNGDALAMRPGLDGDWKGALAAFDSTDYTNRLGLDVRADRLAGLTATLSGIGAPLQSWYGVRVFTDGTEAGDVLPPDEELERLLAAEDRAGRTDPYRGVAALLHLCGVRG
>NZ_CP029189.1|WP_150257134.1|2138866_2139475_+|DUF3043-domain-containing-protein
MGFVFGSRSSKEEKAAATDKVSADLSQPRDPQAPKGRPTPKRAVAQSQRKAVVASTGNRKEDAKRARERRRTEMAKQREALANGDERYLPTRDKGPVRRFVRDYVDSRYSVAEMFLPLAVVILVLSMVRQQSVQSIALTLWLVVIVLILLDSIGLVFRLRKALATRFPDEPRRGAVAYGLMRTLQMRRLRLPKPQVKRGERP
>NZ_CP029189.1|WP_150257133.1|2137808_2138603_-|PspA/IM30-family-protein
MSGVMKRMGMIFRAKANKALDRAEDPRETLDYSYQKQLELLQKVRRGVADVATSRKRLELQLNQLQGQSAKLEDQGRKALALGREDLAREALSRRASLQQQVSDLEVQHQTLQGEEEKLTLAAQRLQAKVDAFRTKKETIKATYTAAQAQTRIAESFSGISEEMSDVGLAIQRAEDKTAQLQARAGAIDELLASGALDDQSGLGSKDDIQAELDRLSGGTDVELELQRMKAELAGGPSAQQQAIEGGAQGDGQQTQTPHRFDKQ
>NZ_CP029189.1|WP_150257132.1|2137516_2137795_-|hypothetical-protein
MIVRIMGEGQVEVADSHFPELNRLDDELLSEMEGGDEEGFRRTLGALLDAVRRLGTPLPDDALEPSELILPAADAALDEVREMLSDDGLIPG
>NZ_CP029189.1|WP_150257131.1|2136646_2137420_+|hypothetical-protein
MGHWWYRNIVEPGKLPLLLALLSFVLSFLVTRMITRMIRAGRGPFKNVTPGGLHIHHVVPGVILVIIGGFGAVGSGRYGFGAYASAVIFGLGAGLVLDEFALILHLDDVYWSEQGRKSVELVVITAAVVALVIGGFVPFGVNDLSSEERQSRGLVVMNGATNFFLALIALWKGKARTALFGLVVPLVALVGAIRLARPGSPYAKRFYANRPRARAKAGLRAFHHDRRWAGPRRKFENFIGGTPDPDHPVSLEKPPGP
>NZ_CP029189.1|WP_150257139.1|2147533_2148346_-|endo-alpha-1,4-polygalactosaminidase
MRKLALLLAVPLLLLAACTSPPPEPERDELSPDPAPGQRWQPKPGVGWQWQLTGKLDTSVKAAVYDVDGFNTTKEQVATLKKDGRKTICYLSTGAWEDFRPDAGAFPKALLGEGNGWEGERWLDIRALAELEPLMGKRFDMCKVKGFDAVEPDNMDGYTNRSGFPLTADDQLKYNRLIARLAHDRGMSVGLKNDLDQIPELVGDFDFAVNEQCVEYEECDRYAPFTDAGKAVFHVEYEGRLNRWCPVARAAKLSSMQKRYDLDAWRKLCP
>NZ_CP029189.1|WP_150261784.1|2148342_2149005_-|hypothetical-protein
MLLVPLYEHPAERPEAWERLIRSAGRLHSVVLNPDSGPGTARDERFAAVAERLRDAGVPVLGYADTDYGRRPHAEVVQDLLRHRDWYATDGAFLDQASADPELLPHYGRLAVAARAAGARTLVLNHGVHPHPGYAELADLLVTFEGPWDAYRDAAAAPSWTADHPAQRFCHLVYGVPPGALAARLAEEIATERGAGVHCAVPGSGAHPWGTLPYALEAAG
>NZ_CP029189.1|WP_150257140.1|2149034_2150588_-|hypothetical-protein
MSGSLWLKPPGSGSGSDTLPAIPRPRHDGDGAGVTAAADPMDELAARLDVFVASAVHPDEIAAILESDGMTDEYIRLTYGRRDSFALAEELYARVPRSFPEPGAAPDPWKVSLTACLLRGVIFALPGLAYLLGAPLLEGPQDRLGLPAGTLTLLAGALIGWVWDQTLSHRAYSWLGLGDRRAAGRTLLVGAPVGALLGTAAALAVPGGPPFSYAFAAGQAFYVGAATVLLVLGRERVLLAALAPMAVGALLALFVDLPVPVRVTLLVVSLLAACTLALRELPLRAGLRSAVRRIRASAARRPGHGPVRWQMLRGAEEDFAPRGPRIGDSVPYGVFGLGTGLLVLYAALGEVLAGGPAEAVAAPSAVALTLSMGPAEWLLHRFRSGSLSGLQGARSPRAFRRRMLATLTRCLAVYLTVLLALGLAGTLLWPDAPMLTGVRIATLLLLGAVMWTGLLLQSFGAVRPAAVVCSSAAVAQSLALLTGLGQPRAVQLLVAGAAATVLAFLVCLLLGRATAHR
>NZ_CP029189.1|WP_150257141.1|2150584_2152111_-|DUF3492-domain-containing-protein
MSHGRHVTMLTEGTYPHVHGGVSTWCDQLVRGMPEVDFNVIALTGSGREPVTWELPRNVYRHTAFPLWGPLPARIRRSSLRGRAHRRFTEVYESFLLSLLDPEPDPARHSFSEALRELAVLARAGKLAPALRSESVLRLLMTVWTRPGLATAEAAPTIHDALTATDLLEHALRPLGVRIPPDSVAHAVSSGLATLPALAAKYLDGVPFLLTEHGIYLRERYLGYRSAAQRWPVKALMLGFYRELNTEGYRQADLITPCNQYNRRWEERGGAESDRIRTVYNGVDPHAFPEAGPEPDVPTLSWCGRIDPIKDLETLIRAYAFMREELPALRLRLFGPVPAGCEEYKLRLEKLAAELGVTDGITYEGRIEQVAQAYAAGSVVMLSSISEGFPFSIIEAMSCGRTTVSTDVGGVREAVGDTGLVVPPREPETMARATLALLRDDERRAELGRMSRRRVVEKFTLHQSVDGFRHIYRELAGQPVLPVHAGDEWTQRLADPWYRELAADGSLW
>NZ_CP029189.1|WP_150257142.1|2152204_2154241_-|hypothetical-protein
MVNKNRMNRVAAMMAAAALVSVAVPAATATAAVTPRIDLKVLVVDDGGSSVEAITAELRDTGVPYTRVQLGSSGRPVINAGFLSEPADSATGRPRAKYQGVVLPNENPFGEGSAEMAALTAYETAYGIRQVDAYTWAHPGVGLEYTDNGGYSGQLDGTQAAVTTAGKAGPFAYLGGQVTFEDNSALVPESFGFMGKPRPGYTSYVDAPVGSGRASLVGEYTHDGRSELVVTFGYNQYQQQFRLLARGIVDWLTQGVHLGQSRNYFAVHVDDVFAPDARWNKDLNCTPGDYACAGGEGKESTIRMSAADAVYAAQWQTSKNFKLDMLFNGGAGEEWKAENGGVDALTAQLVADRAKYRWMNHTYTHPFLGCVQNTAVTPWTCTKNAAGAIQYMSRADISAQIRDNNNWAAAKGITTDKTELVTGEHSGLKTAPQQPVDNPNLAGALADNGVKWAGSDNSREPAQRAVGAALTVPRHPMNVYYNTGTNAEMADEYNWIYTSRAHGGSGICEDNPATSTCLPAPLNVNTGYLDTIVPAEARTALRHVLANDPRPHYVHQSNLAEDRTLYPVLNQVLDTYRALYAPSAPIVNQSMKDTGVEFQRRAAWDKALAEGKVTAYRIGKDVTIKAPSGVVAPVTAPTGTKKQLLLGTADFGTAYAGTRSAWAGPELLQSAVTLKLPS
>NZ_CP029189.1|WP_150257143.1|2154586_2156125_+|leucyl-aminopeptidase
MTALTLSTAGAATLRADALVVGVAKGPKGPIAAAGAEAVDKAFDGKLAGVLDALGASGAEGEITKLPAPAGLKVPVVLAVGLGSVPEKDESFDEEVLRRAAGAAARALHGSKKAAFALPLEDASAVTAVAEGALLGAYAFTAYQGGENKVRKEAKGAAPKAPLAEVALLGAKPRDKEHKAAIERAAIVAAEVNVARDLVNTPPNDLTPEAFAAVASAAAKENGIKVQVLDEKALLKGGYGGIMGVGKGSENLPRLVKLTYTHPKAEKTLAFVGKGITYDSGGISLKPAGHNETMKCDMAGAAAVFASVVAAAKLGLRVNVTGWLALAENMPSGSATKPGDVLRMYSGKTVEVLNTDAEGRLVLGDALTKASEDNPDAIVDVATLTGAMVLALGDRTFGIMANDDAFRTSIHEIAEEVGESSWPMPLPAELRKSMDSPTADIANMGVRMGGGLVAGLFLQEFVGEGITWAHLDIAGPAFHEGAPHGYTPKGGTGSAVRTLVRLAERTATGDLG
>NZ_CP029189.1|WP_150257144.1|2156434_2157823_+|dihydrolipoyl-dehydrogenase
MANDASTVFDLVILGGGSGGYAAALRASQLGLDVALIEKNKLGGTCLHNGCIPTKALLHAGEIADQAREAAQFGVKTSFEGIDIAGVHKYKDEVISGLYKGLQGLVASRKVTYIEGEGRLSSPTSVDVNGQRIQGRHILLATGSVPKSLPGLEIDGNRIISSDHALVLDRVPESAIVLGGGVIGVEFASAWKSFGSDITVIEGLKHLVPVEDENSSKLLERAFRKRGIKFNLGTFFDKAEYTENGVRVTLADGKTFEAEVLLVAVGRGPVSQGLGYEEQGVAMDRGYVLVDEYMQTNVPTISAVGDLVPTLQLAHVGFAEGILVAERLAGLKAVPIDYDGVPRVTYCHPEVASVGITEAKAKEIYGADKVVALKYNLAGNGKSKILKTAGEIKLVQVKDGAVVGVHMVGDRMGEQVGEAQLIYNWEALPAEVAQLIHAHPTQNEAMGEAHLALAGKPLHSHD
>NZ_CP029189.1|WP_150257145.1|2157877_2159665_+|2-oxoglutarate-dehydrogenase,-E2-component,-dihydrolipoamide-succinyltransferase
MSVSVTLPALGESVTEGTVTRWLKAEGERVEADEPLLEVSTDKVDTEIPSPVSGILASIKVAEDETVEVGAELAVIDDGSGAPAAAAAPAAEPAAAAEAPAAAPAPVAEAPAAPAPAAEAPAAAPAGAASGTDVVLPALGESVTEGTVTRWLKQVGESIEADEPLLEVSTDKVDTEIPAPVSGTLLEILVGEDETAEVGARLAVIGVAGAAPAAPAPAAAPAPAAAPAPAAAPAPAAPAPAAPVAAPAPAAPVAAPAPVQAAAPVAAPAPVTPAPAAAPAAPASAGDEAAYVTPLVRKLASESGVNLSTVSGTGVGGRIRKQDVLAAAEAAKAAAAAPAPAAAAPAAKAPAAAVSELRGQTVKMTRMRKVIGDNMMKALHSQAQLSSVVEVDITKIMKLREKAKGAFLAREGVKLSPMPFFVKAAAQALKAHAVVNARINEDEGTITYFDSENIGIAVDSEKGLMTPVIKGAGDLNLAGISKATADLAAKVRGNKITPDELSGATFTISNTGSRGALFDTVIVPPNQVAILGIGATVKRPVVIETAEGTNIGIRDMTYLTLSYDHRLVDGADAARYLSAVKAILEAGEFEVELGL
>NZ_CP029189.1|WP_150261785.1|2159799_2160423_+|FCD-domain-containing-protein
MTPPVVHSLREQIREHIVEGIVSGRWKPGERIVERRIAVELEVSQTPVREALRELETLRLIESAPNKGVRVRNLSAADLEEIYPVRAGLEQIAAELAAPRLAADCSALEPHVAALWEADRTEDGTAQVRHTVGFHREMVRAAGNSVLLHTWESLGIEVFTALSIRWLGTVQKSYAEEHETLVEAFRSRDPDIGVLVKRHVLGCAPRA
>NZ_CP029189.1|WP_150257146.1|2160643_2163328_+|pyruvate-dehydrogenase-(acetyl-transferring),-homodimeric-type
MSDPVGKLPSELDQLPDRDTEETAEWAASLDAVAQAAGTRRAEYLLRRTLQHAEAAGLALPKLLETDYVNTIPTAAEPEFPGDEAMEARITAWNRWNAAAMVTRGSKYGVGGHIATFASAAWLYETGFQHFFRGKEADGSGDQLYIQGHASPGIYARAFLDGRVSEQQLDNFRQESGGNGLPSYPHPRRLPWLWEFPTVSMGLGPLSAIYQARFNRYLQNRNIKDTANSHVWAFLGDGEMDEPESTAALALASREQLDNLTFVINCNLQRLDGPVRANFRVVQELEAQFRGAGWNVIKSLWGSAWDELFQLDTTGALVRRLREVPDAQFQTYATRDVAYIRQHFFGANAELTALGGLLTDAKIAECFHSSRGGHEPRKVYAAYKAALEHKGAPTVILAQTVKGYTLGAGFESKNANHQMKKLTIDEFKDMRDLLGLPIPDSAFADGKVPYGHPGANSPEVQYLNERRAALGGPAPARKVKRVALPAPADRSFAPLLKGSGKQEMATTMAFVRLVKDLMRDKETGKRWVPIVPDEARTFGMESLFPSAGIYSPLGQTYEPVDRDQLMYYKEAKDGQILNEGITEAGAMADFIAACTSYATHGEPMIPFYIFYSMFGWQRTADQMWQLADQLGKGFIVGATAGRTTLTGEGLQHADGHSHLIASTNPASLNYDPAFAYEIAVIVKDGLRRMYGETPEDVFYYLTVYNEPKVQPAMPEGVEEGILKGLYRFNTAADLAEAAPAADAPKVQLMASGTAIHWILEAQKLLAAEWNVAADVWSATSWGELRREALECDEALLRGEVRTPFVTRALEGAQGPVLAVSDWMRQVPDQISQWVEQDYTSLGTDGFGLSDTREGARRHFGVDAQSIVVAALAQLARRGEVPASAVKEARERYGL

Crispr_ID: NZ_CP029189_8

• CRISPR_ID: NZ_CP029189_8
• CRISPR_location: 2327929-2328018
• CRISPR_type: Orphan
• Repeat_type: NA
• Spacer_info: 1 spacers

Consensus repeat of NZ_CP029189_8

Consensus_repeat	Method
TCGCCGGACGCCGTCGACGCGAAGC	CRISPRCasFinder

spacers of NZ_CP029189_8

>8.1|2327954|40|NZ_CP029189|CRISPRCasFinder
ATCTGAGGTCTGTGGGCGGCCTGTGCCCAGCTGCAGACGG

CRISPR arrays and Neighbor proteins around NZ_CP029189_8

CRISPR arrays

The CRISPR arrays of NZ_CP029189_8

>merge|NZ_CP029189|8|2327929-2328018|CRISPRCasFinder
TCGCCGGACGCCGTCGACGCGAAGCATCTGAGGTCTGTGGGCGGCCTGTGCCCAGCTGCAGACGGTCGTCGGACGCCGTCGACGCGAAGC

>NZ_CP029189|8|7|2327929-2328018|CRISPRCasFinder
TCGCCGGACGCCGTCGACGCGAAGC	ATCTGAGGTCTGTGGGCGGCCTGTGCCCAGCTGCAGACGG
TCGTCGGACGCCGTCGACGCGAAGC

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP029189.1|WP_150257264.1|2322508_2322811_+|hypothetical-protein	unknown	unknown	unknown
NZ_CP029189.1|WP_150257271.1|2332096_2333350_+|hypothetical-protein	unknown	unknown	gnl|CDD|239222
NZ_CP029189.1|WP_150261804.1|2334146_2335355_+|energy-coupling-factor-transporter-transmembrane-protein-EcfT	unknown	unknown	gnl|CDD|223692
NZ_CP029189.1|WP_150257261.1|2319292_2320123_+|hypothetical-protein	unknown	unknown	gnl|CDD|236090
NZ_CP029189.1|WP_150257260.1|2318143_2319139_+|N-acetylmuramoyl-L-alanine-amidase	unknown	unknown	gnl|CDD|119407
NZ_CP029189.1|WP_150257272.1|2333349_2334009_+|hypothetical-protein	unknown	unknown	gnl|CDD|235906
NZ_CP029189.1|WP_150261803.1|2330619_2331675_+|MBL-fold-metallo-hydrolase	unknown	unknown	gnl|CDD|293811
NZ_CP029189.1|WP_150261802.1|2321717_2322287_-|hypothetical-protein	unknown	unknown	unknown
NZ_CP029189.1|WP_150257270.1|2328777_2330241_-|aldehyde-dehydrogenase-family-protein	unknown	unknown	gnl|CDD|143457
NZ_CP029189.1|WP_150257273.1|2335351_2337268_+|ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl|CDD|213192
NZ_CP029189.1|WP_150257269.1|2328544_2328778_-|ferredoxin	unknown	unknown	gnl|CDD|224064
NZ_CP029189.1|WP_150257266.1|2323894_2324632_-|methyltransferase-domain-containing-protein	unknown	unknown	gnl|CDD|369777
NZ_CP029189.1|WP_150257265.1|2322815_2323898_-|prenyltransferase	unknown	unknown	gnl|CDD|273702
NZ_CP029189.1|WP_150257275.1|2338477_2338882_+|transglycosylase-SLT-domain-containing-protein	unknown	unknown	gnl|CDD|381594
NZ_CP029189.1|WP_150257276.1|2339012_2340182_-|steroid-3-ketoacyl-CoA-thiolase	unknown	unknown	gnl|CDD|181145
NZ_CP029189.1|WP_150257274.1|2337264_2338191_+|ECF-transporter-S-component	unknown	unknown	gnl|CDD|378961
NZ_CP029189.1|WP_150257262.1|2320223_2321234_+|LLM-class-F420-dependent-oxidoreductase	unknown	unknown	gnl|CDD|274647
NZ_CP029189.1|WP_150257268.1|2326237_2326861_+|TetR-family-transcriptional-regulator	unknown	unknown	gnl|CDD|380056
NZ_CP029189.1|WP_150257267.1|2324696_2326019_-|glycosyltransferase	unknown	unknown	gnl|CDD|340831
NZ_CP029189.1|WP_150257263.1|2321239_2321626_-|hypothetical-protein	unknown	unknown	gnl|CDD|378486

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NZ_CP029189.1|WP_150261804.1|2334146_2335355_+|energy-coupling-factor-transporter-transmembrane-protein-EcfT	gnl|CDD|223692	COG0619, CbiQ, ABC-type cobalt transport system, permease component CbiQ and related transporters [Inorganic ion transport and metabolism].	8.14103e-12
NZ_CP029189.1|WP_150257271.1|2332096_2333350_+|hypothetical-protein	gnl|CDD|239222	cd02892, SQCY_1, Squalene cyclase (SQCY) domain subgroup 1; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold. Squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY) are integral membrane proteins that catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. This group contains bacterial SQCY which catalyzes the convertion of squalene to hopene or diplopterol and eukaryotic OSQCY which transforms the 2,3-epoxide of squalene to compounds such as, lanosterol in mammals and fungi or, cycloartenol in plants. Deletion of a single glycine residue of Alicyclobacillus acidocaldarius SQCY alters its substrate specificity into that of eukaryotic OSQCY. Both enzymes have a second minor domain, which forms an alpha-alpha barrel that is inserted into the major domain.	3.8588e-09
NZ_CP029189.1|WP_150257275.1|2338477_2338882_+|transglycosylase-SLT-domain-containing-protein	gnl|CDD|381594	cd00254, LT-like, lytic transglycosylase(LT)-like domain. Members include the soluble and insoluble membrane-bound LTs in bacteria and LTs in bacteriophage lambda. LTs catalyze the cleavage of the beta-1,4-glycosidic bond between N-acetylmuramic acid (MurNAc) and N-acetyl-D-glucosamine (GlcNAc), as do "goose-type" lysozymes. However, in addition to this, they also make a new glycosidic bond with the C6 hydroxyl group of the same muramic acid residue.	3.20121e-06
NZ_CP029189.1|WP_150257261.1|2319292_2320123_+|hypothetical-protein	gnl|CDD|236090	PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated.	2.63897e-05
NZ_CP029189.1|WP_150257260.1|2318143_2319139_+|N-acetylmuramoyl-L-alanine-amidase	gnl|CDD|119407	cd02696, MurNAc-LAA, N-acetylmuramoyl-L-alanine amidase or MurNAc-LAA (also known as peptidoglycan aminohydrolase, NAMLA amidase, NAMLAA, Amidase 3, and peptidoglycan amidase; EC 3.5.1.28) is an autolysin that hydrolyzes the amide bond between N-acetylmuramoyl and L-amino acids in certain cell wall glycopeptides. These proteins are Zn-dependent peptidases with highly conserved residues involved in cation co-ordination. MurNAc-LAA in this family is one of several peptidoglycan hydrolases (PGHs) found in bacterial and bacteriophage or prophage genomes that are involved in the degradation of the peptidoglycan. In Escherichia coli, there are five MurNAc-LAAs present: AmiA, AmiB, AmiC and AmiD that are periplasmic, and AmpD that is cytoplasmic. Three of these (AmiA, AmiB and AmiC) belong to this family, the other two (AmiD and AmpD) do not. E. coli AmiA, AmiB and AmiC play an important role in cleaving the septum to release daughter cells after cell division. In general, bacterial MurNAc-LAAs are members of the bacterial autolytic system and carry a signal peptide in their N-termini that allows their transport across the cytoplasmic membrane. However, the bacteriophage MurNAc-LAAs are endolysins since these phage-encoded enzymes break down bacterial peptidoglycan at the terminal stage of the phage reproduction cycle. As opposed to autolysins, almost all endolysins have no signal peptides and their translocation through the cytoplasmic membrane is thought to proceed with the help of phage-encoded holin proteins. The amidase catalytic module is fused to another functional module (cell wall binding module or CWBM) either at the N- or C-terminus, which is responsible for high affinity binding of the protein to the cell wall.	4.38431e-40
NZ_CP029189.1|WP_150257272.1|2333349_2334009_+|hypothetical-protein	gnl|CDD|235906	PRK07003, PRK07003, DNA polymerase III subunit gamma/tau.	0.00595375
NZ_CP029189.1|WP_150257276.1|2339012_2340182_-|steroid-3-ketoacyl-CoA-thiolase	gnl|CDD|181145	PRK07850, PRK07850, steroid 3-ketoacyl-CoA thiolase.	0
NZ_CP029189.1|WP_150261803.1|2330619_2331675_+|MBL-fold-metallo-hydrolase	gnl|CDD|293811	cd07725, TTHA1429-like_MBL-fold, uncharacterized Thermus thermophilus TTHA1429 and related proteins; MBL-fold metallo hydrolase domain. Includes the MBL-fold metallo hydrolase domain of uncharacterized Thermus thermophilus TTHA1429 and related proteins. Members of this subgroup belong to the MBL-fold metallo-hydrolase superfamily which is comprised mainly of hydrolytic enzymes which carry out a variety of biological functions.	1.94478e-44
NZ_CP029189.1|WP_150257270.1|2328777_2330241_-|aldehyde-dehydrogenase-family-protein	gnl|CDD|143457	cd07139, ALDH_AldA-Rv0768, Mycobacterium tuberculosis aldehyde dehydrogenase AldA-like. The Mycobacterium tuberculosis NAD+-dependent, aldehyde dehydrogenase PDB structure, 3B4W, and the Mycobacterium tuberculosis H37Rv aldehyde dehydrogenase AldA (locus Rv0768) sequence, as well as the Rhodococcus rhodochrous ALDH involved in haloalkane catabolism, and other similar sequences, are included in this CD.	0
NZ_CP029189.1|WP_150257273.1|2335351_2337268_+|ATP-binding-cassette-domain-containing-protein	gnl|CDD|213192	cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system. Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.	3.5179e-80
NZ_CP029189.1|WP_150257269.1|2328544_2328778_-|ferredoxin	gnl|CDD|224064	COG1141, Fer, Ferredoxin [Energy production and conversion].	3.58287e-07
NZ_CP029189.1|WP_150257266.1|2323894_2324632_-|methyltransferase-domain-containing-protein	gnl|CDD|369777	pfam08241, Methyltransf_11, Methyltransferase domain. Members of this family are SAM dependent methyltransferases.	2.79642e-26
NZ_CP029189.1|WP_150257265.1|2322815_2323898_-|prenyltransferase	gnl|CDD|273702	TIGR01577, Uncharacterized_glycosyl_hydrolase_MJ1610, oligosaccharide amylase. The name of this type of amylase is based on the characterization of an glucoamylase family enzyme from Thermoactinomyces vulgaris. The T. vulgaris enzyme was expressed in E. coli and, like other glucoamylases, it releases beta-D-glucose from starch. However, unlike previously characterized glucoamylases, this T. vulgaris amylase hydrolyzes maltooligosaccharides (maltotetraose, maltose) more efficiently than starch (1), indicating this enzyme belongs to a class of glucoamylase-type enzymes with oligosaccharide-metabolizing activity.	1.21872e-13
NZ_CP029189.1|WP_150257274.1|2337264_2338191_+|ECF-transporter-S-component	gnl|CDD|378961	pfam12822, ECF_trnsprt, ECF transporter, substrate-specific component. Energy-coupling factor (ECF) transporters consist of a substrate-specific component (known as the S component), and an energy-coupling module. The substrate-binding component is a small integral membrane protein which captures specific substrates and forms an active transporter in the presence of the energy-coupling AT module.	2.87122e-14
NZ_CP029189.1|WP_150257262.1|2320223_2321234_+|LLM-class-F420-dependent-oxidoreductase	gnl|CDD|274647	TIGR03559, F420_Rv3520c, probable F420-dependent oxidoreductase, Rv3520c family. Members of this protein family are predicted to be oxidoreductases dependent on coenzyme F420. The family includes a single member in Mycobacterium tuberculosis (Rv3520c/MT3621) but four in Mycobacterium smegmatis. Prediction that this family is F420-dependent is based primarily on Partial Phylogenetic Profiling vs. F420 biosynthesis. [Unknown function, Enzymes of unknown specificity].	1.02803e-163
NZ_CP029189.1|WP_150257268.1|2326237_2326861_+|TetR-family-transcriptional-regulator	gnl|CDD|380056	pfam17925, TetR_C_20, Tetracyclin repressor-like, C-terminal domain. TetR family regulators are involved in the transcriptional control of multidrug efflux pumps, pathways for the biosynthesis of antibiotics, response to osmotic stress and toxic chemicals, control of catabolic pathways, differentiation processes, and pathogenicity. The TetR proteins identified in overm ultiple genera of bacteria and archaea share a common helix-turn-helix (HTH) structure in their DNA-binding domain. However, TetR proteins can work in different ways: they can bind a target operator directly to exert their effect (e.g. TetR binds Tet(A) gene to repress it in the absence of tetracycline), or they can be involved in complex regulatory cascades in which the TetR protein can either be modulated by another regulator or TetR can trigger the cellular response. TetR regulates the expression of the membrane-associated tetracycline resistance protein, TetA, which exports the tetracycline antibiotic out of the cell before it can attach to the ribosomes and inhibit protein synthesis. TetR blocks transcription from the genes encoding both TetA and TetR in the absence of antibiotic. The C-terminal domain is multi-helical and is interlocked in the homodimer with the helix-turn-helix (HTH) DNA-binding domain. This entry represents the C-terminal domain present the transcriptional regulator KstR that regulates a large set of genes responsible for cholesterol catabolism. This is important for Mycobacterium tuberculosis during infection, both at an early stage in the macrophage phagosome and later within the necrotic granuloma.	1.2078e-34
NZ_CP029189.1|WP_150257267.1|2324696_2326019_-|glycosyltransferase	gnl|CDD|340831	cd03801, GT4_PimA-like, phosphatidyl-myo-inositol mannosyltransferase. This family is most closely related to the GT4 family of glycosyltransferases and named after PimA in Propionibacterium freudenreichii, which is involved in the biosynthesis of phosphatidyl-myo-inositol mannosides (PIM) which are early precursors in the biosynthesis of lipomannans (LM) and lipoarabinomannans (LAM), and catalyzes the addition of a mannosyl residue from GDP-D-mannose (GDP-Man) to the position 2 of the carrier lipid phosphatidyl-myo-inositol (PI) to generate a phosphatidyl-myo-inositol bearing an alpha-1,2-linked mannose residue (PIM1). Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility. The members of this family are found mainly in certain bacteria and archaea.	1.14431e-67
NZ_CP029189.1|WP_150257263.1|2321239_2321626_-|hypothetical-protein	gnl|CDD|378486	pfam10739, DUF2550, Protein of unknown function (DUF2550). This family is conserved in Corynebacterineae. The function is not known though most members are annotated as either secreted, or membrane, proteins.	0.00598559

Protein sequences

>NZ_CP029189.1|WP_150257268.1|2326237_2326861_+|TetR-family-transcriptional-regulator
MTAEVKAVTTPASPPLTERQEARRRRILHASAQLASRGGFDAVQMREVAEAAGVALGTLYRYFPSKVHLLVATMQDQLQHMHTTLRKRPPAGDDPAARVAETLMRAFRALQREPQLADAMVRALTFADRSVSPEVDTVSRLTTAIILDAMGLERQPTAEQLSAVRVIEHTWHSALITWLSGRASIAQVKIDIETVCRLIDLTSPEKA
>NZ_CP029189.1|WP_150257267.1|2324696_2326019_-|glycosyltransferase
MTAEAMVTSPFAGSAADGDRPLRIALLTYKGNPFCGGQGVYVRHLSRELVQLGHSVEVVGAQPYPVLDTGASLTELPSLDLYRSPDPFRTPKRDEYRDWIDAVEVATMWTGGFPEPLTFSLRARRHLAARAGDFDVIHDNQTLGYGLLADLGAPLVTTIHHPITVDRRLDLDAAQGRLKRASVRRWYAFTRMQGRVARRLPSVLTVSGSSKQEIAQHLGVRDERIHVVHIGADTDLWSPDPSVAEVPGRIVTTSSADVPLKGLVYLVEALAKLRTEQPEAHLVVVGKRAEQGPVARAIETYGLQDAVRFVKGITDAELVDLVRSAQIACVPSLYEGFSLPAAEAMATGTPLVATTGGAIPEVSGPDGETCLAVPPGDAGALAVALGRMLGDPELRARLGAAGRERVLTRFTWAAAAKGTAAHYRAAIEQAASARTRRSAR
>NZ_CP029189.1|WP_150257266.1|2323894_2324632_-|methyltransferase-domain-containing-protein
MLTVDFSRFPLAAGDRVLDLGCGAGRHAFECYRRGAQVVAVDRNGEEIREVAKWFAAMKEAGEAPAGATATAMEGDALALPFPDDSFDVVIISEVMEHIHDDKGVLAEMVRVLKPGGRIAITVPRYGPEKICWALSDAYHEVEGGHIRIYKADELLGKMKAAGLKPYGTHHAHGLHSPYWWLKCAFGVDNDKALPVKAYHKLLVWDIMKKPLATRLAEQALNPLIGKSFVAYATKPHLPVSAATQ
>NZ_CP029189.1|WP_150257265.1|2322815_2323898_-|prenyltransferase
MSSPGRTEHLVLDGVLTAEEAAQTVAGILAAQRADGAIPWFRGHHLDPWDHTEAAMALDAAGEHEAAERAYAWLARHQNQDGSWYAAYADRPDGVDTAQPQDASRESNFTAYIAVGVWHHYLSTGDDTFLDRMWPAVYAAVECVLTLQQPGGEIGWKREADGTAVTDALLTGSSSIHQALRCALAIAEHREEPQPDWELAAGALRHAIRRHPERFLDKNHYSMDWYYPVLGGALTGSEARARIEERWDEFVVPDLGVRCVLPNPWVTGGESCELALALWATGESDRALEILRSITHLRADNGMYWTGYVFQDEAVWPVEQTTWTAGSLLLAVAALGGDEATTEVFGGTTLPAGLEPDCCG
>NZ_CP029189.1|WP_150257264.1|2322508_2322811_+|hypothetical-protein
MSTHTRVRTRGSSQAGRAVALVADVLAFVIGLWILLYLLEANQGNALVDLVHDVASWLAAWSYDLFTFSREWVQVVIGYGIAAVAYLLIGHAVAGWLYRR
>NZ_CP029189.1|WP_150261802.1|2321717_2322287_-|hypothetical-protein
MVGATACGSGGNGPREELSAASMGELAALAAAEPVAAEADELAAATPSPSTSAEKQKFAKTRFVANASLAAGATYQWIVKPYRAGKFKKGAKGRTFALIKAGLAGAFAYNRLKAATENAKGDPLLAKAVAPLAAGIESLKGLGSKLRKGQAGDGDIDAFDSVINSVKEAGQSAGATVTNKVPSASQLGG
>NZ_CP029189.1|WP_150257263.1|2321239_2321626_-|hypothetical-protein
MIEIVGVVAGCAVAGWLLRRRHLARTAAGPVPGIPCMVRIPAGEGRWRVGRVYGERGVARWVPQRGEPVVLPGGRATGIRVPSVKEGISINPGSRIVTCAYDGGGSIEIAVMPLDVRELLEAVPQAGS
>NZ_CP029189.1|WP_150257262.1|2320223_2321234_+|LLM-class-F420-dependent-oxidoreductase
MRLGLALGYWGRGPAPAHLDLAAEAENLGYHSVWTAEAWGSDAFTPLTWIAAHTSRIRLGTAIAQMAARTPTATAMHALTLDHLSGGRMMLGLGLSGPQVVEGWYGRPFPSSPLTATREYVDVIRQVLRREAPVALDGRFHSHPYRGGDGTGIGKPLRPITHPLRADLPVLLGAEGPKNITQTTRIADGWLPLYWSPTRTDVYQASLTDLPEGFMIAPMARAKVCDDVAEGLLPVKAMLGFYIGGMGHAARNFHADLMARMGYEEEARRIQELFLAGRKEEAVLAVPDEFADEISLVGPRERIAERLDLWRKGPVTDLLLTAPDPHTLRVLAELNS
>NZ_CP029189.1|WP_150257261.1|2319292_2320123_+|hypothetical-protein
MNIRSLTRGDGVVIGAAALLFIASFLDFYSATGIDRPSPWDLGANHLTLPSIFLLGFIAAGLLIASRFQPERKLAGLPLTAWGTVLAVSAAWSSVWALIACPELLDLGAGSILALIATLALAGVAVAGAKVPALAGQLVPEPRPAAVPPYGGQPGQPQPGAGYGYPGAQQTPYGSTPQPVPPYGGTPNPAPGPGPQDAPHTPDPAPAPAADFTPFWFAVPVARPLYAEDGSPTPIAELAPGTWYLAVEQRGAATLIAQTQDGRRGVLNDTSGIQRG
>NZ_CP029189.1|WP_150257260.1|2318143_2319139_+|N-acetylmuramoyl-L-alanine-amidase
MRNDNSPPPPESGSAIPADRHWFTRRSTLVVGVAALAPAALAGWVLTQAFAGPGSDGPSRSAPLASSHSALAPGQRDAKPGSTPGEDASTSPSAGASTPAAAPAPAKGPLTGKTVVVDPGHNAGNFEHTDEIDQQVDIGTGHKECDTTGTTTNAGYKEADFTLDVSLRLRTALEAQGAKVVLTHQADRPWGPCITERARIGNEANADAVVSVHADGVSSGNRGFHIILPAKVKGGAADTAKIVEPSRRLGERIAGNFARTTGSDPANYLGSGTGLVVRDDLGGLNLSTRPKVFIECGNMRDAKDAAQLTSPEWRQKAAQGISDGIVGFLGG
>NZ_CP029189.1|WP_150257269.1|2328544_2328778_-|ferredoxin
MGDRWQVEVDRGVCIGSGMCVNHAPDGFVLDSARQSHPRTPQSDANEPTLTAAEGCPVEAILITLATTGEPVFPPEE
>NZ_CP029189.1|WP_150257270.1|2328777_2330241_-|aldehyde-dehydrogenase-family-protein
MTELVEHGKLFIGGEWTDPLGTDTIRIVSPHTEQVIGSVPHASTADVDRAVAVARKAFDEGPWPRMTLDERIAVVTRIKDAIAVRHEEIARSISSQNGSPYSWSVLAQALGPMMVYDAAITVARAYPYEEHRQGALGPILVRREPVGVVAAVIPWNVPQFVAAAKLAPALLTGSTVILKPSPEAPLDSYILADIAREAGLPEGVLSILPADREVSEYLVGHPGIDKVSFTGSVAAGKRVMEVAARNLTRVTLELGGKSAAVVLPDADVATAVAGIVPAAWMNNGQACVAQTRILAPRSRYEEVAEALAAAAGALVVGDPLDPATQLGPLVAKRQQQRSLDYIRIGQEEGAKVLAGGGRPAGLEQGWYVEPTLFGDVDNSMRIAREEIFGPVVCLIPYGDEAEAVRVANDSDFGLSGSVWTADAERGIDFARRIRTGTFNVNTFSLDMMGPFGGYKNSGLGREFGPEGLSEYLEHKMIHLPAGHGAGA
>NZ_CP029189.1|WP_150261803.1|2330619_2331675_+|MBL-fold-metallo-hydrolase
MPGADDAPHVTDHGGGVWAIKVPIPDNPLGHTLVHLLDTDRGPVLVDTGWDDPASWDVLVAGLAALGTAVTDIHGVVITHHHPDHHGLSGQVREASGAWIAMHAADTEVVVRTRASEPGVWFDYMSAKLAAAGAPEEHVAPLRAARASGRMRTLPGLRAAVPDREIVPAELLPLAGRRLRAIWTPGHTPGHVCLHLEEAHPANLPGNGRLFSGDHLLPGISPHIGLYEAPEDTRVTDPLGDYLDSLERIGRLEPAEVLPAHQHAFTDAPARVRELLDHHEERLSGLWTLLAEPLTPWGLAERMEWNRPWEQIPYGSRNIAVSEAEAHVRRLVKQGRAEAVPGTDPVAYRAL
>NZ_CP029189.1|WP_150257271.1|2332096_2333350_+|hypothetical-protein
MNVRRSAAALAASAVLCVGAAPAALADTAPPASPSAPPAVPDGLYGKNDPTYDGVWRQSFALLAQDTVGVKPSVKAMSWLVGQQCQNGGFASFRVNPAVACDANTMYDTNATAAAVQALQALGGHDAAVKKSVDWLKSVQNEDGGWSYVPGSPSDADSTGVVISALSVAGEKAAEVRSKAGKSAYDGLLTFQLGCAAEPAADRGAFAYQPADGKLVANASSTAAAALAGLGKGAAVVPSAENTPAAPLACPAANAADPAAAAQGAAGYLAEALKKDGHLMAVTPGADQPTPDTGNTVDAVLALAAAGHKESAAGALKWLEANSAEWAKGSPAALGTLVLAAHATGSDPKSFGGTDLVAALNATGPAPQGADTEATEVDGGEEKPSGGQNVWWIIGTGAAAGVGIGILLSGRRKKNHS
>NZ_CP029189.1|WP_150257272.1|2333349_2334009_+|hypothetical-protein
MRRRLPAVALAFGIVLALLAATPALAAGYRYWSFWDGSAGGGWAYATQGPSMARPADGAVQGFRFSVSKDAAAQAAQPRAAADFETVCGATAPTEGSKRVALVIDFGVPADAPAGDTPPDAAPRTACAQVAPEATTAEALASVAKPLRYNSAALLCAISGYPKQGCGEQVADAGAGTEAPAPSAAPDSGGGPSAGLLAGIAAVAALAAAGVWQSRRRTR
>NZ_CP029189.1|WP_150261804.1|2334146_2335355_+|energy-coupling-factor-transporter-transmembrane-protein-EcfT
MRPPRRHAPTGAAPDDVTRARRSPAGAQGPSHRSAYERWRPPQAVRATALHAGAWWLWALGLATAASRTTNPLLLGLVIGVAGYVVAARRTDAPWARSYGAFLKLGLFVIGLRLLFSMLLGSPIPGSHTLFTLPEIPLPAWAQGIRFGGRVTAEQLVFAFYDGLKLAALLVCVGAANALANPARLLKSLPAALYEAGVAVVVAMTFAPNMVADVVRLRTARRLRGRPTGGVKAVLQIGLPVLEGALERSVAIAASMDARGYGRTAEVPPVVRHTTNALTLGGLVGMCAGTYGLLAAQGAGYGLPVLGAGAALAVAGLRLGGRRSVRTRYRPDRWGPRAWLVAGSGAAVAALLVRAGSVDPAALHPGVVPLVAPTLPLWPAAAILIGLLPAFVAPVPPKEASQ
>NZ_CP029189.1|WP_150257273.1|2335351_2337268_+|ATP-binding-cassette-domain-containing-protein
MIRFEQVSVTYEGASGPSLHGVDLVIPEGELTLLVGPSGVGKSTLLGTVSGLVPHFTGGTLRGRVTVAGRDTRTHKPRELADVVGTVGQDPLAHFVTDVVEDELAYGMESLGLPPAVMRRRVEETLDLLGLNDLRDRPIATLSGGQQQRVAIGSVLTPHPKVLVLDEPTSALDPAAAEEVLAVLQRLVHDLGTTVLMAEHRLERVVQYADQVLLLPSPGAAPVIGTPAEIMAVSPVHPPVVSLGRLAGWSPLPLSVRDARRRAAPLRSRLSPVPRPTTSQVPAPAPADPAPPVIPAPPTPEPNPAPPTPEPNPAPPMPEPNPAPPTPEANPAPPAFEARGSGGGAPVAEAPGLLTRLLRLRRPSTTTATSTGTGTATGTAPGGPAPAEVHRVTVRRGRVQALHGITLTVAPGETVALMGRNGAGKSTLLSTLVGTVAPTTGEVTVGGRTPHRTAPPEMVRRVGLVPQEPRDLLYADTVAAECAAADSDAAAPAGTCRDLVSALLPDVRDDVHPRDLSEGQRLALALALVLTGRPALLLLDEPTRGLDYAAKVRLVEILRGLAADGHAIVLATHDVELAAELAHRVVILAGGEIVADGPTAEVVVSSPAFAPQVAKVLAPDPWLTVRQVAEALGAAEAR
>NZ_CP029189.1|WP_150257274.1|2337264_2338191_+|ECF-transporter-S-component
MNEPVRPARRPARPARRTARPLRIGPRAAVALVLVTLIGIAAFGWPLLADRQSGLAHAQDAPWLFAALLPLLVAVVVATIADDGMDAKAVAMLGVLAAVGAALRPLGAGTAGLEPMFFLLVLSGRVLGPGFAFVLGSVTMFASALLTGGVGPWMPFQMLSMGWFALGAGLLPGPERIRGRAELLMLAVYGLAGAFAYGFVMNLQGWVMLQNMPHGASFHAGDPLPANLARFVVYYVTTSLGWDLGRAVLTVALTLTLGATLLKALRRATRKAAFDASVSFDPGPEQGPELQPKGVRTAAEGDIRGLPR
>NZ_CP029189.1|WP_150257275.1|2338477_2338882_+|transglycosylase-SLT-domain-containing-protein
MSNTVIRRIAASKKALAGTVVALGVAGSMLATVPAQAAPMSAKAIAQQMIKDPAQFAAFDKIISHESGWNHTATNPSSGAYGLAQALPASKMASAGADWKTNPATQIKWGLDYMNDRYGSPVGAWNFWSANHWY
>NZ_CP029189.1|WP_150257276.1|2339012_2340182_-|steroid-3-ketoacyl-CoA-thiolase
MAAEPVIVEAVRTPIGKRGGALANLHPAYLLGETYRELLARTGIQPDCVEQIVGGTVTHAGEQSMNPARNAWLAMGLPYETAATTVDCQCGSSQQANHMVANMISGGVMDIGIACGVEAMSRVPLGSGSKHGPGKPFPDEWNVDLPNQFEAAERIARHRGLSREDVDRLGLLSQERAAAAWAEERFKRETFAVQVPTTEEEQAAGQGMWRLVDRDEGLRDTSMEALARLKPVMPTAVHTAGNSSQISDGAAAVMWASRKMARALKLKPRARIVAQTLVGADPHYHLDGPIDATRAVLGKAGMSLRDIDLVEINEAFASVVLSWAKVFDQDLEKVNVNGGGIALGHPVGATGARLITTALHELERRDKEFALITMCAGGALATGTIIQRL

Crispr_ID: NZ_CP029189_9

• CRISPR_ID: NZ_CP029189_9
• CRISPR_location: 2341665-2341769
• CRISPR_type: Orphan
• Repeat_type: NA
• Spacer_info: 1 spacers

Consensus repeat of NZ_CP029189_9

Consensus_repeat	Method
CCCCCACCAGCCCCGCCGGCGTTTGAGGCGCGGGG	CRISPRCasFinder

spacers of NZ_CP029189_9

>9.1|2341700|35|NZ_CP029189|CRISPRCasFinder
CCCGGTGCGGAGCGCCGATCTCCAGCTCCGCCGTT

CRISPR arrays and Neighbor proteins around NZ_CP029189_9

CRISPR arrays

The CRISPR arrays of NZ_CP029189_9

>merge|NZ_CP029189|9|2341665-2341769|CRISPRCasFinder
CCCCCACCAGCCCCGCCGGCGTTTGAGGCGCGGGGCCCGGTGCGGAGCGCCGATCTCCAGCTCCGCCGTTCCCCCACCAGCCTCGCCGGCGTTTGAGGCGCGGGG

>NZ_CP029189|9|8|2341665-2341769|CRISPRCasFinder
CCCCCACCAGCCCCGCCGGCGTTTGAGGCGCGGGG	CCCGGTGCGGAGCGCCGATCTCCAGCTCCGCCGTT
CCCCCACCAGCCTCGCCGGCGTTTGAGGCGCGGGG

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP029189.1|WP_150257284.1|2347636_2348056_-|nuclear-transport-factor-2-family-protein	unknown	unknown	gnl|CDD|378915
NZ_CP029189.1|WP_150257276.1|2339012_2340182_-|steroid-3-ketoacyl-CoA-thiolase	unknown	unknown	gnl|CDD|181145
NZ_CP029189.1|WP_150257286.1|2351006_2351885_+|peptidoglycan-binding-protein	unknown	unknown	gnl|CDD|366659
NZ_CP029189.1|WP_150257275.1|2338477_2338882_+|transglycosylase-SLT-domain-containing-protein	unknown	unknown	gnl|CDD|381594
NZ_CP029189.1|WP_150257281.1|2346043_2346247_+|antitoxin	unknown	unknown	gnl|CDD|379416
NZ_CP029189.1|WP_150257272.1|2333349_2334009_+|hypothetical-protein	unknown	unknown	gnl|CDD|235906
NZ_CP029189.1|WP_150261805.1|2348195_2348675_+|GNAT-family-N-acetyltransferase	unknown	unknown	gnl|CDD|366181
NZ_CP029189.1|WP_150261803.1|2330619_2331675_+|MBL-fold-metallo-hydrolase	unknown	unknown	gnl|CDD|293811
NZ_CP029189.1|WP_150257270.1|2328777_2330241_-|aldehyde-dehydrogenase-family-protein	unknown	unknown	gnl|CDD|143457
NZ_CP029189.1|WP_150257273.1|2335351_2337268_+|ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl|CDD|213192
NZ_CP029189.1|WP_150257280.1|2343643_2345689_-|DUF2029-domain-containing-protein	unknown	unknown	gnl|CDD|379588
NZ_CP029189.1|WP_150257278.1|2342009_2342525_-|hotdog-fold-thioesterase	unknown	unknown	gnl|CDD|239527
NZ_CP029189.1|WP_150257269.1|2328544_2328778_-|ferredoxin	unknown	unknown	gnl|CDD|224064
NZ_CP029189.1|WP_150257271.1|2332096_2333350_+|hypothetical-protein	unknown	unknown	gnl|CDD|239222
NZ_CP029189.1|WP_150257283.1|2346817_2347567_-|hypothetical-protein	unknown	unknown	gnl|CDD|372958
NZ_CP029189.1|WP_150257285.1|2348732_2350802_-|DHA2-family-efflux-MFS-transporter-permease-subunit	unknown	unknown	gnl|CDD|129794
NZ_CP029189.1|WP_150257282.1|2346424_2346757_+|antibiotic-biosynthesis-monooxygenase	unknown	unknown	gnl|CDD|225209
NZ_CP029189.1|WP_150257279.1|2342632_2343574_+|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl|CDD|153232
NZ_CP029189.1|WP_150257274.1|2337264_2338191_+|ECF-transporter-S-component	unknown	unknown	gnl|CDD|378961
NZ_CP029189.1|WP_150261804.1|2334146_2335355_+|energy-coupling-factor-transporter-transmembrane-protein-EcfT	unknown	unknown	gnl|CDD|223692

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NZ_CP029189.1|WP_150257284.1|2347636_2348056_-|nuclear-transport-factor-2-family-protein	gnl|CDD|378915	pfam12680, SnoaL_2, SnoaL-like domain. This family contains a large number of proteins that share the SnoaL fold.	4.8462e-13
NZ_CP029189.1|WP_150257276.1|2339012_2340182_-|steroid-3-ketoacyl-CoA-thiolase	gnl|CDD|181145	PRK07850, PRK07850, steroid 3-ketoacyl-CoA thiolase.	0
NZ_CP029189.1|WP_150257286.1|2351006_2351885_+|peptidoglycan-binding-protein	gnl|CDD|366659	pfam01471, PG_binding_1, Putative peptidoglycan binding domain. This domain is composed of three alpha helices. This domain is found at the N or C-terminus of a variety of enzymes involved in bacterial cell wall degradation. This domain may have a general peptidoglycan binding function. This family is found N-terminal to the catalytic domain of matrixins. The domain is found to bind peptidoglycan experimentally.	5.0463e-12
NZ_CP029189.1|WP_150257275.1|2338477_2338882_+|transglycosylase-SLT-domain-containing-protein	gnl|CDD|381594	cd00254, LT-like, lytic transglycosylase(LT)-like domain. Members include the soluble and insoluble membrane-bound LTs in bacteria and LTs in bacteriophage lambda. LTs catalyze the cleavage of the beta-1,4-glycosidic bond between N-acetylmuramic acid (MurNAc) and N-acetyl-D-glucosamine (GlcNAc), as do "goose-type" lysozymes. However, in addition to this, they also make a new glycosidic bond with the C6 hydroxyl group of the same muramic acid residue.	3.20121e-06
NZ_CP029189.1|WP_150257281.1|2346043_2346247_+|antitoxin	gnl|CDD|379416	pfam14013, MT0933_antitox, MT0933-like antitoxin protein. This family of proteins contains the MT0933 protein, which has been identified as an antitoxin to /protein MT0934. This family of proteins is found in bacteria. Proteins in this family are typically between 61 and 90 amino acids in length.	1.10671e-12
NZ_CP029189.1|WP_150257272.1|2333349_2334009_+|hypothetical-protein	gnl|CDD|235906	PRK07003, PRK07003, DNA polymerase III subunit gamma/tau.	0.00595375
NZ_CP029189.1|WP_150261805.1|2348195_2348675_+|GNAT-family-N-acetyltransferase	gnl|CDD|366181	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family. This family contains proteins with N-acetyltransferase functions such as Elp3-related proteins.	1.18245e-13
NZ_CP029189.1|WP_150261803.1|2330619_2331675_+|MBL-fold-metallo-hydrolase	gnl|CDD|293811	cd07725, TTHA1429-like_MBL-fold, uncharacterized Thermus thermophilus TTHA1429 and related proteins; MBL-fold metallo hydrolase domain. Includes the MBL-fold metallo hydrolase domain of uncharacterized Thermus thermophilus TTHA1429 and related proteins. Members of this subgroup belong to the MBL-fold metallo-hydrolase superfamily which is comprised mainly of hydrolytic enzymes which carry out a variety of biological functions.	1.94478e-44
NZ_CP029189.1|WP_150257270.1|2328777_2330241_-|aldehyde-dehydrogenase-family-protein	gnl|CDD|143457	cd07139, ALDH_AldA-Rv0768, Mycobacterium tuberculosis aldehyde dehydrogenase AldA-like. The Mycobacterium tuberculosis NAD+-dependent, aldehyde dehydrogenase PDB structure, 3B4W, and the Mycobacterium tuberculosis H37Rv aldehyde dehydrogenase AldA (locus Rv0768) sequence, as well as the Rhodococcus rhodochrous ALDH involved in haloalkane catabolism, and other similar sequences, are included in this CD.	0
NZ_CP029189.1|WP_150257273.1|2335351_2337268_+|ATP-binding-cassette-domain-containing-protein	gnl|CDD|213192	cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system. Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.	3.5179e-80
NZ_CP029189.1|WP_150257280.1|2343643_2345689_-|DUF2029-domain-containing-protein	gnl|CDD|379588	pfam14378, PAP2_3, PAP2 superfamily.	1.05718e-42
NZ_CP029189.1|WP_150257278.1|2342009_2342525_-|hotdog-fold-thioesterase	gnl|CDD|239527	cd03443, PaaI_thioesterase, PaaI_thioesterase is a tetrameric acyl-CoA thioesterase with a hot dog fold and one of several proteins responsible for phenylacetic acid (PA) degradation in bacteria. Although orthologs of PaaI exist in archaea and eukaryotes, their function has not been determined. Sequence similarity between PaaI, E. coli medium chain acyl-CoA thioesterase II, and human thioesterase III suggests they all belong to the same thioesterase superfamily. The conserved fold present in these thioesterases is referred to as an asymmetric hot dog fold, similar to those of 4-hydroxybenzoyl-CoA thioesterase (4HBT) and the beta-hydroxydecanoyl-ACP dehydratases (FabA/FabZ).	3.96784e-28
NZ_CP029189.1|WP_150257269.1|2328544_2328778_-|ferredoxin	gnl|CDD|224064	COG1141, Fer, Ferredoxin [Energy production and conversion].	3.58287e-07
NZ_CP029189.1|WP_150257271.1|2332096_2333350_+|hypothetical-protein	gnl|CDD|239222	cd02892, SQCY_1, Squalene cyclase (SQCY) domain subgroup 1; found in class II terpene cyclases that have an alpha 6 - alpha 6 barrel fold. Squalene cyclase (SQCY) and 2,3-oxidosqualene cyclase (OSQCY) are integral membrane proteins that catalyze a cationic cyclization cascade converting linear triterpenes to fused ring compounds. This group contains bacterial SQCY which catalyzes the convertion of squalene to hopene or diplopterol and eukaryotic OSQCY which transforms the 2,3-epoxide of squalene to compounds such as, lanosterol in mammals and fungi or, cycloartenol in plants. Deletion of a single glycine residue of Alicyclobacillus acidocaldarius SQCY alters its substrate specificity into that of eukaryotic OSQCY. Both enzymes have a second minor domain, which forms an alpha-alpha barrel that is inserted into the major domain.	3.8588e-09
NZ_CP029189.1|WP_150257283.1|2346817_2347567_-|hypothetical-protein	gnl|CDD|372958	pfam14196, ATC_hydrolase, L-2-amino-thiazoline-4-carboxylic acid hydrolase. This family of enzymes catalyzes the conversion of L-2-amino-delta2-thiazoline-4-carboxylic acid (L-ATC) to N-carbamoyl-L-cysteine. It cleaves the carbon-sulphur bond in the ring structure of L-ATC to produce N-carbamoyl-L-cysteine.	1.03055e-08
NZ_CP029189.1|WP_150257285.1|2348732_2350802_-|DHA2-family-efflux-MFS-transporter-permease-subunit	gnl|CDD|129794	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. [Cellular processes, Toxin production and resistance, Transport and binding proteins, Other].	5.49676e-79
NZ_CP029189.1|WP_150257282.1|2346424_2346757_+|antibiotic-biosynthesis-monooxygenase	gnl|CDD|225209	COG2329, COG2329, Uncharacterized enzyme involved in biosynthesis of extracellular polysaccharides [General function prediction only].	2.10067e-23
NZ_CP029189.1|WP_150257279.1|2342632_2343574_+|helix-turn-helix-domain-containing-protein	gnl|CDD|153232	cd03138, GATase1_AraC_2, AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain. A subgroup of AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain. AraC regulators are defined by a AraC-type helix-turn-helix DNA binding domain at their C-terminal. AraC family transcriptional regulators are widespread among bacteria and are involved in regulating diverse and important biological functions, including carbon metabolism, stress responses and virulence in different microorganisms. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with typical GATase1domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.	8.46749e-45
NZ_CP029189.1|WP_150257274.1|2337264_2338191_+|ECF-transporter-S-component	gnl|CDD|378961	pfam12822, ECF_trnsprt, ECF transporter, substrate-specific component. Energy-coupling factor (ECF) transporters consist of a substrate-specific component (known as the S component), and an energy-coupling module. The substrate-binding component is a small integral membrane protein which captures specific substrates and forms an active transporter in the presence of the energy-coupling AT module.	2.87122e-14
NZ_CP029189.1|WP_150261804.1|2334146_2335355_+|energy-coupling-factor-transporter-transmembrane-protein-EcfT	gnl|CDD|223692	COG0619, CbiQ, ABC-type cobalt transport system, permease component CbiQ and related transporters [Inorganic ion transport and metabolism].	8.14103e-12

Protein sequences

>NZ_CP029189.1|WP_150257276.1|2339012_2340182_-|steroid-3-ketoacyl-CoA-thiolase
MAAEPVIVEAVRTPIGKRGGALANLHPAYLLGETYRELLARTGIQPDCVEQIVGGTVTHAGEQSMNPARNAWLAMGLPYETAATTVDCQCGSSQQANHMVANMISGGVMDIGIACGVEAMSRVPLGSGSKHGPGKPFPDEWNVDLPNQFEAAERIARHRGLSREDVDRLGLLSQERAAAAWAEERFKRETFAVQVPTTEEEQAAGQGMWRLVDRDEGLRDTSMEALARLKPVMPTAVHTAGNSSQISDGAAAVMWASRKMARALKLKPRARIVAQTLVGADPHYHLDGPIDATRAVLGKAGMSLRDIDLVEINEAFASVVLSWAKVFDQDLEKVNVNGGGIALGHPVGATGARLITTALHELERRDKEFALITMCAGGALATGTIIQRL
>NZ_CP029189.1|WP_150257275.1|2338477_2338882_+|transglycosylase-SLT-domain-containing-protein
MSNTVIRRIAASKKALAGTVVALGVAGSMLATVPAQAAPMSAKAIAQQMIKDPAQFAAFDKIISHESGWNHTATNPSSGAYGLAQALPASKMASAGADWKTNPATQIKWGLDYMNDRYGSPVGAWNFWSANHWY
>NZ_CP029189.1|WP_150257274.1|2337264_2338191_+|ECF-transporter-S-component
MNEPVRPARRPARPARRTARPLRIGPRAAVALVLVTLIGIAAFGWPLLADRQSGLAHAQDAPWLFAALLPLLVAVVVATIADDGMDAKAVAMLGVLAAVGAALRPLGAGTAGLEPMFFLLVLSGRVLGPGFAFVLGSVTMFASALLTGGVGPWMPFQMLSMGWFALGAGLLPGPERIRGRAELLMLAVYGLAGAFAYGFVMNLQGWVMLQNMPHGASFHAGDPLPANLARFVVYYVTTSLGWDLGRAVLTVALTLTLGATLLKALRRATRKAAFDASVSFDPGPEQGPELQPKGVRTAAEGDIRGLPR
>NZ_CP029189.1|WP_150257273.1|2335351_2337268_+|ATP-binding-cassette-domain-containing-protein
MIRFEQVSVTYEGASGPSLHGVDLVIPEGELTLLVGPSGVGKSTLLGTVSGLVPHFTGGTLRGRVTVAGRDTRTHKPRELADVVGTVGQDPLAHFVTDVVEDELAYGMESLGLPPAVMRRRVEETLDLLGLNDLRDRPIATLSGGQQQRVAIGSVLTPHPKVLVLDEPTSALDPAAAEEVLAVLQRLVHDLGTTVLMAEHRLERVVQYADQVLLLPSPGAAPVIGTPAEIMAVSPVHPPVVSLGRLAGWSPLPLSVRDARRRAAPLRSRLSPVPRPTTSQVPAPAPADPAPPVIPAPPTPEPNPAPPTPEPNPAPPMPEPNPAPPTPEANPAPPAFEARGSGGGAPVAEAPGLLTRLLRLRRPSTTTATSTGTGTATGTAPGGPAPAEVHRVTVRRGRVQALHGITLTVAPGETVALMGRNGAGKSTLLSTLVGTVAPTTGEVTVGGRTPHRTAPPEMVRRVGLVPQEPRDLLYADTVAAECAAADSDAAAPAGTCRDLVSALLPDVRDDVHPRDLSEGQRLALALALVLTGRPALLLLDEPTRGLDYAAKVRLVEILRGLAADGHAIVLATHDVELAAELAHRVVILAGGEIVADGPTAEVVVSSPAFAPQVAKVLAPDPWLTVRQVAEALGAAEAR
>NZ_CP029189.1|WP_150261804.1|2334146_2335355_+|energy-coupling-factor-transporter-transmembrane-protein-EcfT
MRPPRRHAPTGAAPDDVTRARRSPAGAQGPSHRSAYERWRPPQAVRATALHAGAWWLWALGLATAASRTTNPLLLGLVIGVAGYVVAARRTDAPWARSYGAFLKLGLFVIGLRLLFSMLLGSPIPGSHTLFTLPEIPLPAWAQGIRFGGRVTAEQLVFAFYDGLKLAALLVCVGAANALANPARLLKSLPAALYEAGVAVVVAMTFAPNMVADVVRLRTARRLRGRPTGGVKAVLQIGLPVLEGALERSVAIAASMDARGYGRTAEVPPVVRHTTNALTLGGLVGMCAGTYGLLAAQGAGYGLPVLGAGAALAVAGLRLGGRRSVRTRYRPDRWGPRAWLVAGSGAAVAALLVRAGSVDPAALHPGVVPLVAPTLPLWPAAAILIGLLPAFVAPVPPKEASQ
>NZ_CP029189.1|WP_150257272.1|2333349_2334009_+|hypothetical-protein
MRRRLPAVALAFGIVLALLAATPALAAGYRYWSFWDGSAGGGWAYATQGPSMARPADGAVQGFRFSVSKDAAAQAAQPRAAADFETVCGATAPTEGSKRVALVIDFGVPADAPAGDTPPDAAPRTACAQVAPEATTAEALASVAKPLRYNSAALLCAISGYPKQGCGEQVADAGAGTEAPAPSAAPDSGGGPSAGLLAGIAAVAALAAAGVWQSRRRTR
>NZ_CP029189.1|WP_150257271.1|2332096_2333350_+|hypothetical-protein
MNVRRSAAALAASAVLCVGAAPAALADTAPPASPSAPPAVPDGLYGKNDPTYDGVWRQSFALLAQDTVGVKPSVKAMSWLVGQQCQNGGFASFRVNPAVACDANTMYDTNATAAAVQALQALGGHDAAVKKSVDWLKSVQNEDGGWSYVPGSPSDADSTGVVISALSVAGEKAAEVRSKAGKSAYDGLLTFQLGCAAEPAADRGAFAYQPADGKLVANASSTAAAALAGLGKGAAVVPSAENTPAAPLACPAANAADPAAAAQGAAGYLAEALKKDGHLMAVTPGADQPTPDTGNTVDAVLALAAAGHKESAAGALKWLEANSAEWAKGSPAALGTLVLAAHATGSDPKSFGGTDLVAALNATGPAPQGADTEATEVDGGEEKPSGGQNVWWIIGTGAAAGVGIGILLSGRRKKNHS
>NZ_CP029189.1|WP_150261803.1|2330619_2331675_+|MBL-fold-metallo-hydrolase
MPGADDAPHVTDHGGGVWAIKVPIPDNPLGHTLVHLLDTDRGPVLVDTGWDDPASWDVLVAGLAALGTAVTDIHGVVITHHHPDHHGLSGQVREASGAWIAMHAADTEVVVRTRASEPGVWFDYMSAKLAAAGAPEEHVAPLRAARASGRMRTLPGLRAAVPDREIVPAELLPLAGRRLRAIWTPGHTPGHVCLHLEEAHPANLPGNGRLFSGDHLLPGISPHIGLYEAPEDTRVTDPLGDYLDSLERIGRLEPAEVLPAHQHAFTDAPARVRELLDHHEERLSGLWTLLAEPLTPWGLAERMEWNRPWEQIPYGSRNIAVSEAEAHVRRLVKQGRAEAVPGTDPVAYRAL
>NZ_CP029189.1|WP_150257270.1|2328777_2330241_-|aldehyde-dehydrogenase-family-protein
MTELVEHGKLFIGGEWTDPLGTDTIRIVSPHTEQVIGSVPHASTADVDRAVAVARKAFDEGPWPRMTLDERIAVVTRIKDAIAVRHEEIARSISSQNGSPYSWSVLAQALGPMMVYDAAITVARAYPYEEHRQGALGPILVRREPVGVVAAVIPWNVPQFVAAAKLAPALLTGSTVILKPSPEAPLDSYILADIAREAGLPEGVLSILPADREVSEYLVGHPGIDKVSFTGSVAAGKRVMEVAARNLTRVTLELGGKSAAVVLPDADVATAVAGIVPAAWMNNGQACVAQTRILAPRSRYEEVAEALAAAAGALVVGDPLDPATQLGPLVAKRQQQRSLDYIRIGQEEGAKVLAGGGRPAGLEQGWYVEPTLFGDVDNSMRIAREEIFGPVVCLIPYGDEAEAVRVANDSDFGLSGSVWTADAERGIDFARRIRTGTFNVNTFSLDMMGPFGGYKNSGLGREFGPEGLSEYLEHKMIHLPAGHGAGA
>NZ_CP029189.1|WP_150257269.1|2328544_2328778_-|ferredoxin
MGDRWQVEVDRGVCIGSGMCVNHAPDGFVLDSARQSHPRTPQSDANEPTLTAAEGCPVEAILITLATTGEPVFPPEE
>NZ_CP029189.1|WP_150257278.1|2342009_2342525_-|hotdog-fold-thioesterase
MTTYETSAQLRSRTHTWQPRPQMTPEILGMSGLEILQASMKGELPGASMMSTLGFRLADAAQGSAVFEGDPGDHLLNPMGTVHGGFLATLLDSALGSAVMTLLPAGVSYTTVQLGVHMIRPVVADTPTLRCEGTALHVGRSTATAEARVVGTHDGKLYAHGTTTCVVLRMG
>NZ_CP029189.1|WP_150257279.1|2342632_2343574_+|helix-turn-helix-domain-containing-protein
MKVAVLALDGVFDSGISAVLDVLHTAHALRRQVAGAAPPAFDIRTVGVRRRIRTGLGHRIDTEPAAVAEDADLLVVPALMERRPDLLVKAVASAAYRPARRILTGARERGTPLATSCTGTFLLAEAGVLDEQRATTSWWLAPVFRDRYRRVTLDETRMVVSSGGVTTAGAAFSHLDLALSIVGTRSPALADLVRHYLVVDDRASQAAYAIPSALARHDPLVAAFEQWARTRLADPAPITEAARELGVSERTLQRAVARTLGRTPVGLVQDLRVEQAEHLLRTTDLPLAAVARRVGYESPGPLRTLLRKRRDGS
>NZ_CP029189.1|WP_150257280.1|2343643_2345689_-|DUF2029-domain-containing-protein
MANAAEHSGANGHAGVIGDHGRLGAARLLLWALAGALAVRQAATVLRVPPAEWLSGFHLPGRLPGSLYDTGQFSDTPFAGLVLKPLVGLAAPSLEVAWTCVTLLCVAAIGLVAARGLPDPVPRRTALLAAPVLTALMMVSLPVREAASPGQTAVLPVLLVLLAVFRVPGDRPAGFLVGLAAALQPALLLFAPLLWLTGRRPTARTAAVTFAGATALSWVAMPRDSWTYWVEHLAGTGLGGAPDGLANQSVHGALLRLGLTGPAEILLYAALAAAIVWIGLRRAVRYAQDGQLLLAVAVTGCMAVAVSPAGWRHQLLWVLLAVAGKVGRRAADRPVWPVAVVLAMTLPSAMLLPNLAALAPVRDNVPLLTAVAAACAVPFLPRSSAYWREPVPTAYGRPASARWARVPLMPFWRRVLSRPNLLLELLLIRVGYSLYSHIRAAAPTSRGLAEGNGSQIHGIERALGIDIEHAVNHAVVNTPWLEAFFNFYYTSFHFVVPLTILAVLYWRRPGDYRWARASLGLATVLALIGFWLYPLAPPRLMPGLGFIDTVHGPQDLANPSYGAMTAISNQYAAMPSLHFGWSLWCGIVIVVLAPKGWQKLLGALHPLITVCAIVATANHWVLDAVGGAVVVSAGFGLVYVLSGPRGLQASLPAQARRDEAERAAPAAPGTSTAEPVAGARS
>NZ_CP029189.1|WP_150257281.1|2346043_2346247_+|antitoxin
MSMLDKLKDLIKGHPDQARQGVEKAGDAFDAKTGNKYQSQVDTAQQKLNEQIGKEPPRPGEGRPPQT
>NZ_CP029189.1|WP_150257282.1|2346424_2346757_+|antibiotic-biosynthesis-monooxygenase
MPSVVKINVLTVPAEQREILEQRFASRAGAVESSDGFEWFELLRPVEGTDQYLVYTRWRSEQDFQAWMEGPMKAAHQGGGEGGGERPKPAASASTVWSFEVVQQAGPKQA
>NZ_CP029189.1|WP_150257283.1|2346817_2347567_-|hypothetical-protein
MNVIDKAIGAEAHWLMGRVMPRKFLGEVRKHLHHVAPEREKELIGAIRARAEEVEAADADMATDASSKGALAIGAVVLAAFETLLPLFDGDDRRTIRYLQHAMSPVLRRPYDLTFSTLNERDHALDKIEKTCRVMVKLYPARFEFDFQRPEPGLFEMNVRRCFWHDFFARHDATPVTTVMCAFDVNFMKAIDPAVSGLRAERTSLLSLGDSKCRFAVLETDDPLHGYGDALETRFADGEDGEDGEDGNG
>NZ_CP029189.1|WP_150257284.1|2347636_2348056_-|nuclear-transport-factor-2-family-protein
MSEHPDCALVRRGYEAFGKGDMETMSTLLTADVIHHVPGANPLSGHHKGRENVLDLFRRLGEETKGTFRVDLESVLADGRGHVMSFHTARADRGDRGIEIRQGLFFTIIGDKITDIDQCTADIDEEDVFWSQGQGQGQG
>NZ_CP029189.1|WP_150261805.1|2348195_2348675_+|GNAT-family-N-acetyltransferase
MSWTVAPEPFTTRDATALRRAYYAEVAGRYWKREVTETEIDQGLLDFPDDGLVPPTGQFVVGRLDGEPLACGGIRLLDSRTAELTRVYVDRRARGTGGGAALLEVLEAESRALGADRVRLDTRSDLVEARALYARHGYAEIPAYNSGPYAQHWFEKRLA
>NZ_CP029189.1|WP_150257285.1|2348732_2350802_-|DHA2-family-efflux-MFS-transporter-permease-subunit
MAQDVTAQGPGPVLDPEKTGPGAEHASRDVLVSIGALLLGLLIAALDQTIVSTALPTIVSDLGGMAHLSWVVTAYMLASTAATPLWGKLGDQYGRKRLFQYAIVLFLIGSALCGIAQDMPQLIGFRALQGLGGGGLIVLSMAIVGDIVPPRERGKYQGLFGAVFGATSVLGPLLGGLFVDNLSWRWVFYINLPIGLVALVVIAAVLHIPARSAKHTIDYLGTFLVACVATCLVLVASLGGTWGWGSARIIGVALLGAVLLACFLLVERKAAEPVLPLGLFRIRTFTLCSAISFVVGFAMFGAMVYLPTFLQIVQGVSPTMSGVHMLPMVIGMLITSTGSGQIVSRTGRWKVFPIAGTAVTAIGLLLLHQLHRTSSTWEMSVYFFVFGAGLGLVMQVLVLVVQNAVSYADLGVATSGATFFRSIGASFGVAIFGTVFTHQLDDKLAASLAGVTLPTGASVAQLEADPRAIGALPAELQPQVLDAYATAITDVFLYAVPIVLVAFVIAWFLKEDKLRGSVTAPDVTETLASNPVQRSSHDEVARALSVLGTREGRRHVYEKITARAGYDLLPASSWMLLRIKRYGSVEPAILAERTNVPLKVVTDAARQIEERGLAVRDGLPLVLTGEGRACAAKLAEARQESLAELLGDWWGPDRPTDLVKLVRQINKELCGSDAEEPYDALPRRDHAAH
>NZ_CP029189.1|WP_150257286.1|2351006_2351885_+|peptidoglycan-binding-protein
MRIRPYVTLPDPGEQDTPVSPQPVSAVVAPEPRPAPAPVHAPAEDDTPAYGIPVPPQDGPWPAGPATPAPASHPAETVQLRTIPAPAPGHTYDSKAGGGGGGGPEKRTGPAARKPLALLIGAAAAVALSGTAVAVWALPSSGDTEAVLMEAKASVPVTSAAPAASSASPSPSKHSPSPSASPSPSASKSASPSPSPSASRTSPPPSPSPSPSVSRSSSPPPVQAPTLRHGDSGSEVEKLQRLLAAQGLYRGRINGRFDWRVEEAVSEFQYDRGIDDQEWGFYGPVTRKALEG

Crispr_ID: NZ_CP029189_10

• CRISPR_ID: NZ_CP029189_10
• CRISPR_location: 2420287-2420390
• CRISPR_type: Orphan
• Repeat_type: NA
• Spacer_info: 1 spacers

Consensus repeat of NZ_CP029189_10

Consensus_repeat	Method
TGCTCTGCCAATTGAGCTACAGGGGA	CRISPRCasFinder

spacers of NZ_CP029189_10

>10.1|2420313|52|NZ_CP029189|CRISPRCasFinder
CTGCGCTCCCCCGACTGGACTCGAACCAGTAACCTGCCGGTTAACAGCCGGC

CRISPR arrays and Neighbor proteins around NZ_CP029189_10

CRISPR arrays

The CRISPR arrays of NZ_CP029189_10

>merge|NZ_CP029189|10|2420287-2420390|CRISPRCasFinder
TGCTCTGCCAATTGAGCTACAGGGGACTGCGCTCCCCCGACTGGACTCGAACCAGTAACCTGCCGGTTAACAGCCGGCTGCTCTGCCAATTGAGCTACAGGGGA

>NZ_CP029189|10|9|2420287-2420390|CRISPRCasFinder
TGCTCTGCCAATTGAGCTACAGGGGA	CTGCGCTCCCCCGACTGGACTCGAACCAGTAACCTGCCGGTTAACAGCCGGC
TGCTCTGCCAATTGAGCTACAGGGGA

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP029189.1|WP_150261814.1|2410369_2411884_+|GAF-domain-containing-protein	unknown	unknown	gnl|CDD|225113
NZ_CP029189.1|WP_150257343.1|2428771_2430874_-|molybdopterin-dependent-oxidoreductase	unknown	unknown	gnl|CDD|239155
NZ_CP029189.1|WP_150257340.1|2424255_2426178_+|ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl|CDD|224055
NZ_CP029189.1|WP_150257331.1|2413161_2413959_+|LysE-family-transporter	unknown	unknown	gnl|CDD|237537
NZ_CP029189.1|WP_150257338.1|2420935_2422384_+|sugar-kinase	unknown	unknown	gnl|CDD|198375
NZ_CP029189.1|WP_030012642.1|2412693_2413134_-|Lrp/AsnC-family-transcriptional-regulator	unknown	unknown	gnl|CDD|224439
NZ_CP029189.1|WP_150257345.1|2431872_2432580_-|hypothetical-protein	unknown	unknown	gnl|CDD|225500
NZ_CP029189.1|WP_150257333.1|2416007_2416853_-|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl|CDD|225117
NZ_CP029189.1|WP_150257335.1|2417275_2418538_-|MFS-transporter	unknown	unknown	gnl|CDD|236700
NZ_CP029189.1|WP_150257342.1|2428053_2428656_+|hypothetical-protein	unknown	unknown	unknown
NZ_CP029189.1|WP_150257336.1|2418752_2419910_+|YbdK-family-carboxylate-amine-ligase	unknown	unknown	gnl|CDD|237408
NZ_CP029189.1|WP_150261815.1|2413998_2415336_+|acetyl-CoA-carboxylase	unknown	unknown	gnl|CDD|223895
NZ_CP029189.1|WP_150257330.1|2411953_2412580_+|GNAT-family-N-acetyltransferase	unknown	unknown	gnl|CDD|379326
NZ_CP029189.1|WP_150257332.1|2415429_2415795_-|hypothetical-protein	unknown	unknown	unknown
NZ_CP029189.1|WP_150257346.1|2432910_2433636_+|sirohydrochlorin-chelatase	unknown	unknown	gnl|CDD|225049
NZ_CP029189.1|WP_150257334.1|2416902_2417265_+|cupin-domain-containing-protein	unknown	unknown	gnl|CDD|380355
NZ_CP029189.1|WP_150257344.1|2431033_2431804_-|glucose-1-dehydrogenase	unknown	unknown	gnl|CDD|187600
NZ_CP029189.1|WP_150257341.1|2426274_2426790_+|GNAT-family-N-acetyltransferase	unknown	unknown	gnl|CDD|366181
NZ_CP029189.1|WP_150257337.1|2420535_2420841_+|YtxH-domain-containing-protein	unknown	unknown	unknown
NZ_CP029189.1|WP_150257339.1|2422525_2424259_+|ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl|CDD|224055

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NZ_CP029189.1|WP_150261814.1|2410369_2411884_+|GAF-domain-containing-protein	gnl|CDD|225113	COG2203, FhlA, FOG: GAF domain [Signal transduction mechanisms].	6.11408e-18
NZ_CP029189.1|WP_150257343.1|2428771_2430874_-|molybdopterin-dependent-oxidoreductase	gnl|CDD|239155	cd02754, MopB_Nitrate-R-NapA-like, Nitrate reductases, NapA (Nitrate-R-NapA), NasA, and NarB catalyze the reduction of nitrate to nitrite. Monomeric Nas is located in the cytoplasm and participates in nitrogen assimilation. Dimeric Nap is located in the periplasm and is coupled to quinol oxidation via a membrane-anchored tetraheme cytochrome. Members of the MopB_Nitrate-R-NapA CD belong to the molybdopterin_binding (MopB) superfamily of proteins.	0
NZ_CP029189.1|WP_150257340.1|2424255_2426178_+|ATP-binding-cassette-domain-containing-protein	gnl|CDD|224055	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms].	0
NZ_CP029189.1|WP_150257331.1|2413161_2413959_+|LysE-family-transporter	gnl|CDD|237537	PRK13875, PRK13875, conjugal transfer protein TrbL; Provisional.	0.00126511
NZ_CP029189.1|WP_150257338.1|2420935_2422384_+|sugar-kinase	gnl|CDD|198375	cd07809, FGGY_D-XK_1, D-xylulose kinases, subgroup 1; members of the FGGY family of carbohydrate kinases. This subgroup is composed of D-xylulose kinases (XK, also known as xylulokinase; EC 2.7.1.17) from bacteria and eukaryota. They share high sequence similarity with Escherichia coli xylulokinase (EcXK), which catalyzes the rate-limiting step in the ATP-dependent phosphorylation of D-xylulose to produce D-xylulose 5-phosphate (X5P) and ADP. Some uncharacterized sequences are also included in this subfamily. EcXK exists as a dimer. Each monomer consists of two large domains separated by an open cleft that forms an active site. This model includes both the N-terminal domain, which adopts a ribonuclease H-like fold, and the structurally related C-terminal domain. The presence of Mg2+ or Mn2+ might be required for catalytic activity. Members of this subgroup belong to the FGGY family of carbohydrate kinases.	6.45632e-121
NZ_CP029189.1|WP_030012642.1|2412693_2413134_-|Lrp/AsnC-family-transcriptional-regulator	gnl|CDD|224439	COG1522, Lrp, Transcriptional regulators [Transcription].	2.47352e-32
NZ_CP029189.1|WP_150257345.1|2431872_2432580_-|hypothetical-protein	gnl|CDD|225500	COG2949, SanA, Uncharacterized membrane protein [Function unknown].	2.13632e-57
NZ_CP029189.1|WP_150257333.1|2416007_2416853_-|helix-turn-helix-domain-containing-protein	gnl|CDD|225117	COG2207, AraC, AraC-type DNA-binding domain-containing proteins [Transcription].	8.69259e-18
NZ_CP029189.1|WP_150257335.1|2417275_2418538_-|MFS-transporter	gnl|CDD|236700	PRK10489, PRK10489, enterobactin transporter EntS.	1.04719e-69
NZ_CP029189.1|WP_150257336.1|2418752_2419910_+|YbdK-family-carboxylate-amine-ligase	gnl|CDD|237408	PRK13517, PRK13517, glutamate--cysteine ligase.	2.40869e-115
NZ_CP029189.1|WP_150261815.1|2413998_2415336_+|acetyl-CoA-carboxylase	gnl|CDD|223895	COG0825, AccA, Acetyl-CoA carboxylase alpha subunit [Lipid metabolism].	7.62663e-51
NZ_CP029189.1|WP_150257330.1|2411953_2412580_+|GNAT-family-N-acetyltransferase	gnl|CDD|379326	pfam13673, Acetyltransf_10, Acetyltransferase (GNAT) domain. This family contains proteins with N-acetyltransferase functions such as Elp3-related proteins.	4.0333e-13
NZ_CP029189.1|WP_150257334.1|2416902_2417265_+|cupin-domain-containing-protein	gnl|CDD|380355	cd02226, cupin_YdbB-like, Bacillus subtilis YdbB and related proteins, cupin domain. This family includes bacterial proteins homologous to YdbB, a Bacillus subtilis protein of unknown function. It also includes protein Nmb1881 From Neisseria meningitidis, also of unknown function. Proteins in this family belong to the cupin superfamily with a conserved "jelly roll-like" beta-barrel fold capable of homodimerization.	1.041e-57
NZ_CP029189.1|WP_150257346.1|2432910_2433636_+|sirohydrochlorin-chelatase	gnl|CDD|225049	COG2138, COG2138, Sirohydrochlorin ferrochelatase [Inorganic ion transport and metabolism].	9.42574e-26
NZ_CP029189.1|WP_150257344.1|2431033_2431804_-|glucose-1-dehydrogenase	gnl|CDD|187600	cd05341, 3beta-17beta-HSD_like_SDR_c, 3beta17beta hydroxysteroid dehydrogenase-like, classical (c) SDRs. This subgroup includes members identified as 3beta17beta hydroxysteroid dehydrogenase, 20beta hydroxysteroid dehydrogenase, and R-alcohol dehydrogenase. These proteins exhibit the canonical active site tetrad and glycine rich NAD(P)-binding motif of the classical SDRs. 17beta-dehydrogenases are a group of isozymes that catalyze activation and inactivation of estrogen and androgens, and include members of the SDR family. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs.	2.81209e-102
NZ_CP029189.1|WP_150257341.1|2426274_2426790_+|GNAT-family-N-acetyltransferase	gnl|CDD|366181	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family. This family contains proteins with N-acetyltransferase functions such as Elp3-related proteins.	1.74483e-19
NZ_CP029189.1|WP_150257339.1|2422525_2424259_+|ATP-binding-cassette-domain-containing-protein	gnl|CDD|224055	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms].	1.02558e-163

Protein sequences

>NZ_CP029189.1|WP_150257336.1|2418752_2419910_+|YbdK-family-carboxylate-amine-ligase
MIEPGNSTTSTGTTQNTVRPTVPLTVGVEEEFLLVDARSFRVVPAAPLVLATAGGLPGELHPEGTRYQVEISTPIAHSAASLRTELAALRRTLGRAARAHGCRLLAAPSPVVAVEGPLHLTDDEPRQREQHRRFGALTDTLVSCGRHIHIGTLDVDTAVAVSNRIRPWLPTLIALAANSPFWGGRDTGHASWRAMAWSGWPSAGLPPHFTSTGHFRRSVQTLLGSGAALDTKMVYWDLRPSGHWPTLEIRAPDMSPDIDSAVLQAELARALVSTALREIAERHPEPAVRDDVLRLARWRAAHDGLEGFGLDPYTGTELPAADLAEALLDLVAPELAAAGDLDHAAKTLAGLLRDGSGAHRQRVAYARRQDLTDVLRHLTDQTEDF
>NZ_CP029189.1|WP_150257335.1|2417275_2418538_-|MFS-transporter
MPPTTAPPQLWQRIFADLTPLSASADYRRLWFGGTISWVGQAMTTLAISLQVYDITGSSFSVGLVGLFSLVPLVVFGLYGGAIADTVDRRKLGLYSSTGAAALSLALAAAALLGYHRVWFLYAVVALQAVCGALTGPARSAMIPRLLPVEQLPAANALNSVTVTLGSMVGPALGGFIVTVAGYEAAYLIDAVTFSAALYAMWKLPSMKPDRAEGARGRASVLDGLRFLGTRPNIRMTFFSDMAAMVLAQPRALFPAIAGLWYGGGPGTVGLLVAAMAAGALLGGLFSGWQGRIQRHGLAILLAVAGWGLAVAVFGITRNLWLGMLFLALAGYADTASMVFRTTMLQAATPDDMRGRLQGVFIIVVAGGPRLGDFLAGTTADLVSPTVAVTGGGLACVLVLGLLALRWRNFARYDARSPQA
>NZ_CP029189.1|WP_150257334.1|2416902_2417265_+|cupin-domain-containing-protein
MTTHKVNIAEKLAGFTEQWAPRRIARVNDYEVKAARLQGEFVWHAHEDTDELFLVVAGTLTIRLRDGDVVLGPGEMYVVPRGVEHCPAAEEEAQILLFEPAGTVNTGSEGGDRTREPVDA
>NZ_CP029189.1|WP_150257333.1|2416007_2416853_-|helix-turn-helix-domain-containing-protein
MAAIRPRSTVSAWQPQVPGITEVFHARFTEHAYPAHVHDTWALMVLDGGRVDFALDGERHGLGVSDAVVLLPPGVSHDGRTVTEAGFRKRVLYLDTSVLPERLTGAAVDTPLLADPALRERVHGLHLALTERDPFEAASRLAFVRERLHRRLAGRAAEAPEPGPGPGPGPRRGPGGLVAVRLRELLDARVTGGITLEEASAELGNPHPTHLIRSFKAAYGLPPHAYLTARRVALARRLLLAGMRPAEVAVAAGFYDQAHLTRHFGRHVGISPARFARSGRS
>NZ_CP029189.1|WP_150257332.1|2415429_2415795_-|hypothetical-protein
MENDPVSFDLAVLAMEESADPATARAMFERCAFGRHDEGELDERVAGFYERLRSRFPDRPPHAVDLPWMSTPLAVGIDHVIMNLSFSSRSDAALRAIEELAGEFRLVIWDPQSQEAFLPAV
>NZ_CP029189.1|WP_150261815.1|2413998_2415336_+|acetyl-CoA-carboxylase
MASVTDPGSFAELPAPRRDSPADGPLGWTGYDDSRARAAGRTGEQESVVTGTARVGGHAATVISFEFGFLGGSLGQRTGDRLEAAYAHAREHRLPLVSLIATGGSRMQEGMLALTQLQRVARQCVLTRAAGLPQLAVLRDPTTGGGWATLGAGADVVLALPGAQVGFAGSRVRPADADPAAYCAEGQYAAGHVDAVVPAAELAGTLADWLRVLAAPRPGGPAEPPGALADVAPPRTGWDAVLQARHPDRPHATAYLDAYFDLRLPLSGDRAGGTDPGMLCGFGLREGRAVAYAAQCGTATRPAGYRTAARVIRLADRLGIPVLTLVDTPGAANDAAAEHAGAGAAIADTFAAVAAATVPVTTLLIGEGGSGGALALAAPGNTWVTPDSYFSVIAPELAAAILKRPAEAAPATAEQLRVRPQDLVALGVARGIVGPDASAKARARG
>NZ_CP029189.1|WP_150257331.1|2413161_2413959_+|LysE-family-transporter
MRARPPRAGPDARPMSELMTPALAGAAAGLGVAMPMGAMSVLLLQEAMRDRRTAVAAAAGIAAVDLGYAALATAVGPWVASHISPVEAWVRLASAVILLVIAAHGLSGASPASGASAASGASVASAASGASAASGASPGSVSAPVSPPAPAPTPKQAPAPPARPARAFARYVGLTALNPTTALYFAALTTAQGAALGTGPAGAAFLLGVGAASLLWQQALVALGSLVGTRVPDRARVWTFRLGYGLVAAYALKIAFPLPALGFSP
>NZ_CP029189.1|WP_030012642.1|2412693_2413134_-|Lrp/AsnC-family-transcriptional-regulator
MDRLDREILGILQQDARISYRDLGVRVGLSANATADRVRRMRREGVIRGFTTIVDPAADTAGGLVVFIDVTLRQDTTNEEFERQVAKLSGITEVVHVTGEHDYLVRARAADPAALDGLLRRMKREAGVAQSNTRIALRAATRPGQY
>NZ_CP029189.1|WP_150257330.1|2411953_2412580_+|GNAT-family-N-acetyltransferase
MTDESAPATGEPVAGHDRHVRLDRLDRHDRHDRHDRHDRHDRHVRLRTDDDLGACVRVLAEVHEQDGYPVNWPDDPGGWLSGPTLLAAWVAELDGRIVGHVGLSRSAADDAAPALWSGREGVGAAAAAVVGRLFVAPAARGHGIGALLMARATQEARGRALHPVLDVVASDTSAVALYERLGWELLATVEQRWSPELTVTVRCYAAAG
>NZ_CP029189.1|WP_150261814.1|2410369_2411884_+|GAF-domain-containing-protein
MLQAVLDVGSELELHTTLQHIVDSATELCAARYGALGVVDPERVLLTQLFTAGLTEEERAAIPHLPDARSGVLGALVSDPRPLVLDDVTQDPRAAGFPPGHPPMHSLLGVPIRVHTQVFGNLYLTEKRGGGPFTDEDLALLRVLASQAGIAIGNARLYETARRRERWIDGAAAVTTTLLAGRPAADALKCVAERARLLADAAAGVVLQPTPEGGMEIVAASTQGDPGDLVGTAIAPGSPVLVQLLGGEPVFIDDSATDPRMTTHVRERFGPSMMLPLQSGGQLIGTLALPRARGGPAYDAVDRLLASQFASQAALALVLADAQHDREQLAVYEDRDRIARDLHDLVVQRLFATEMMLESTRRRAANAPSGDTVGDELSRAVDELDSTIQEVRTAIFALQQPPTDAPTTFRGRVLRETGGAAAVLGFQPSVHFTGAVDALLPEPVAAGLLGALRGALAAAHRRGEITFIDVQVDASPSRVRLTVADDGRAESGARGTTVTWESAL
>NZ_CP029189.1|WP_150257337.1|2420535_2420841_+|YtxH-domain-containing-protein
MRYKVTFVVGLALGYVLGTRAGRERYEQLRKSARQLAQNPAVRNAAETAGQTGREYAGKAFTAVSHKVGDAVPDSLAGRVRGLRGRAGGGAGEDDWGTSNT
>NZ_CP029189.1|WP_150257338.1|2420935_2422384_+|sugar-kinase
MGIVAGLDSSSAFTRIVVCDTETGAVLRQGYAPHPQPAGEPDGANPHETDPQAWLLSLGEAAGGGLLEGVQAIGVSAQQHGLLPLDPQGALVRPALVGNDKRGQVAAADIIDAFGGRHRWVEAVGSVPHSAQPVAKLAWLARTEPEAARRVAVLMSPHDWLVWQLLGRPARRTTDRGGASGTGYWSAATGTWRPDLVELALGHRALLPEVLGPADAAGTTPEGLLISSGTGETMAAALGLGLGPGDAVVSLGASGSVMAVHHEAVSEPGGLVTSLADASGMHLPVVNTSNAVRALRGTAELLGTDLEGLSALALKSTPGAHGLVLLPYLEGERTPNLPHAAGTLTGLRRDSMKPEHLARAAFEGMLCGLVDALDVLRSRGVEIRRVFLLGAAAELPAVQAAAPGLFGTQVVVPAPADYAALGAARQAAWALGVAQGTLAPHTPPVWPAPAAQVFEPGEEFPAWQAVRQQYIATREQIHPGAF
>NZ_CP029189.1|WP_150257339.1|2422525_2424259_+|ATP-binding-cassette-domain-containing-protein
MLIRLLRTHLGAYRKPIAVLVLLQLLQTSASLYLPTLNADIIDNGVVNGDTGYILRFGALMLGVSLVQLVCNVGAVYYGARTAAAFGRDLRAAVFDRVQSFSARELGQFGAPSLITRTTNDVQQVQMLVLMTFTLMVSAPIMCVGGIAMALSLDVKLSGVLLAVVPVLGISVGAIVFRTRPLFRRMQTRLDTVNRVLREQITGNRVIRAFVRDDYEKDRFREANADLTGVSLAAGKLLAYMFPTVIVVVNISSVAVIWFGAMRVDSGGMEIGQLTAFLAYLMQIVMAVMMATFMFMMVPRAEVCGERIQEVLDTDSSVVPPEDPVRELARRGRLELRGADFRYPGAEAPVLRGVDLVARPGETTAVIGSTGSGKSTLLGLVPRLFDATGGEVLVDGEDVRALDPDLLARTVGMVPQKPYLFSGTIASNLRYGRPDASDEELWRALEVAQAKEFVSALEGGLDAPVSQGGTNVSGGQRQRLAIARALVQRPEIYLFDDSFSALDYATDAALRAALSRETEDATVVIVAQRVSTIRDADRIIVLDEGQVVGEGRHHELMAGNETYREIVLSQLTEAEAA
>NZ_CP029189.1|WP_150257340.1|2424255_2426178_+|ATP-binding-cassette-domain-containing-protein
MSGPGGRMMMGPAQRSMDFKGSGRRLLRQLAYDRAKIWGMVAAVVGSVGCAVVGPKILGEATDLVFAGIVGREMPAGTTKEQALDGLRARGQDGMADMLAGTDFTPGQGIDFGAVGVVAIWALVVFTLAGLLMLVATRLSNHVMNGTVYRMREELQAKLSRLPLSYFDQQKRGEVLSRATNDIDNIGQTLQQTMGQLLNSLLTIVGVLVMMFWISPLLALVALVTVPLSVFVAAKIGKKSQPQFVAQWKATGALNAHIEEMYSGHSLVKVFGRQRESAAVFAEQNEALYRASFKAQLVSGIMQPVMFFISNINYVLIAVVGGLRVASGTLSIGDVQAFIQYSRQFSMPLTQVASMANLVQSGVASAERVYELLDAAEQEPDAVVPERPQELRGQVTFDKVAFRYEPDRPLIENLSLTVEPGQTVAIVGPTGAGKTTLVNLLMRFYEVTGGEIALDGVDIAKMTREELRNGIGMVLQDTWLFGGTIAENIAYGASRAVTRAEIEEAARAAHADRFIRTLPDGYDTVLDDEGAGVSAGEKQLITIARAFLSEPVILVLDEATSSVDTRTEVLIQKAMARLARGRTSFVIAHRLSTIRDADVILVMESGSIVEQGTHEELLASGGAYARLYAAQFAQAVAEVD
>NZ_CP029189.1|WP_150257341.1|2426274_2426790_+|GNAT-family-N-acetyltransferase
MASDVVIRPARAEDEPNIVELARSVWSRVSEPGPERPADAALFDERHPVESFLVAERGRQIVGYVAQAPASPLDTNRHVRHIQGLAVSESARGGGVGAALVEAACAAARAGGARRMNLRVLGHNEPARQLYRRCGFEVVGVLPEEFLLDGAYVDDVWMSRPLTGADGPAQG
>NZ_CP029189.1|WP_150257342.1|2428053_2428656_+|hypothetical-protein
MSEMIDSMSEYETHVTLRCPDATELARLEAWAGARELKVTHILLARGRMVSQPMLTLPDRTGHELLVPRLRAAGFDPVRVKVETVPWTTDSPGPGGGYFEHHLKLMLPADFDRTALESLVVPHGAHLSWNARRVLTGGAHERFVTQRWRGTAAEAGAACDALVAALGSAGYEIRSEEREFVLYDSDLSVDDGWIAEGVTA
>NZ_CP029189.1|WP_150257343.1|2428771_2430874_-|molybdopterin-dependent-oxidoreductase
MRTTDSATDTHCPYCALQCGMRLRPEPGGAAVTVEERADFPVNRGALCGKGRTAPAVLSSRVRLTHPLVRTHAGLLEPATWEEALDAVAEGLARAGRTYGPDAVGVFGGGGLTNEKAYALGKFARVALRTSQIDYNGRFCMSSAAAAHQRAFGLDRGLPFPLADIPRTGCVVLVGSNLAETMPPALRYLTELKANGGTLIVIDPRRTRTAEQADLHLAPRPGTDLALALGLLHLIVAEGRTDEEFIAARTTGWEEARAAAMAHWPELVERITGIPVPRLREAVAMFCAPESAMVLTARGPEQQSKGTDTVGAWINLCLATGRAGRPLSGYGCLTGQGNGQGGREHGQKADQLPGYRKLTDPAARAHVAEVWGVDPDSLPGPGRSAYELLDALGTDVKALLLMGSNPVVSAPRAGHVEDRIRSLDFLAVADVVLSETAALADVVLPVTQWAEETGTTTNLEGRVLLRRRALTPPPGVRGDLDVLHGLAARLGVEKGFPTEPEEVFEELRRASAGGPADYSGITYARIEAEQGVFWPCPGSPGSPGVPGDSPGTERLFLDRFATDDGRARFAPVSHRDAAEVPDADYPLLLTTGRVVAQYQSGAQTRRVDELNAAAPGSFVELHPRLAARIGAVDGSPLAVTSRRGRAVAPARITDTIRADTVFMPFHWPGEGRANTLTNPALDPTSRMPEFKVCAVRVEPA
>NZ_CP029189.1|WP_150257344.1|2431033_2431804_-|glucose-1-dehydrogenase
MAVVDLSGKAVVVTGGARGLGAAAAQAVMDGGGRVLITDVLEAEGAATAAKLGDAARFLRHDVTSEADWQAALEHAVAEFGRIDGLVNNAGISTGQFLEHESVEHFRQVVEINLVGVFIGIKTAIPFLRANGGGSVVNVSSAAGLTGLALTAGYGASKWGVRGLSKIGAVELAEAGIRVNSVHPGMTLTPMTAPIGIQAGEGNYPGAPLGRVGVPEEIAAAIAFLLSDAAGYMTGAELAVDGGWTAGLTVKYLTGQ
>NZ_CP029189.1|WP_150257345.1|2431872_2432580_-|hypothetical-protein
MRRPRLPGVEWSRAVAALRSVRNRRRAVQAVMAGCVLALLPSAWMHAVAADRLRTTADTPAAEVAVVFGAGLLGSRPTPYLADRLDAAAELYRTGKVKVVLVTGDNSRTEYDEPDAMRTYLTAHGVPDARIVSDYAGFDTWDSCVRAKEIFGVERAVLVTQGFHIRRAVALCQAAGLESYGVGVADVHDATWYYGETREVFAAGKAALDAVFKPAPRFLGPKEEGVSQALAALAD
>NZ_CP029189.1|WP_150257346.1|2432910_2433636_+|sirohydrochlorin-chelatase
MQPTLVAVAHGSRDPRALHTALALLDRVRELRPRLDVRLGHIELNEPLLDDTLDGLSGSAVLVPLLLGRGYHVKRDLPAAAARAGHLLTRVAAPLGPHPLLVEALYERLLETGWTPAPGSAVVLAAAGSRDPDSAADTRRTAAQLSERLGGTPVTCAYASAAAPAAPEAVRALAARGHHRIAVASYFAAPGRFATQTAAAAPGPAAAPLGDHPALARLLLHRYDEARRLPLGLARPELVSA

Crispr_ID: NZ_CP029189_11

• CRISPR_ID: NZ_CP029189_11
• CRISPR_location: 2734492-2734587
• CRISPR_type: Orphan
• Repeat_type: NA
• Spacer_info: 1 spacers

Consensus repeat of NZ_CP029189_11

Consensus_repeat	Method
CACATCAAGCCCCGCCGGCCATT	CRISPRCasFinder

spacers of NZ_CP029189_11

>11.1|2734515|50|NZ_CP029189|CRISPRCasFinder
TCAGCCCCGCCGGCGATTGAGGCGACCACCCCAGGCAGGGACAGCCCGCA

CRISPR arrays and Neighbor proteins around NZ_CP029189_11

CRISPR arrays

The CRISPR arrays of NZ_CP029189_11

>merge|NZ_CP029189|11|2734492-2734587|CRISPRCasFinder
CACATCAAGCCCCGCCGGCCATTTCAGCCCCGCCGGCGATTGAGGCGACCACCCCAGGCAGGGACAGCCCGCACACATCAAGCCCCGCCGGCGATT

>NZ_CP029189|11|10|2734492-2734587|CRISPRCasFinder
CACATCAAGCCCCGCCGGCCATT	TCAGCCCCGCCGGCGATTGAGGCGACCACCCCAGGCAGGGACAGCCCGCA
CACATCAAGCCCCGCCGGCGATT

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP029189.1|WP_150257557.1|2740078_2740561_-|MarR-family-transcriptional-regulator	unknown	unknown	gnl|CDD|224759
NZ_CP029189.1|WP_150257560.1|2742838_2744074_-|M6-family-metalloprotease-domain-containing-protein	unknown	unknown	gnl|CDD|274507
NZ_CP029189.1|WP_150257550.1|2732177_2732573_-|hypothetical-protein	unknown	unknown	unknown
NZ_CP029189.1|WP_150257544.1|2725697_2725991_-|hypothetical-protein	unknown	unknown	unknown
NZ_CP029189.1|WP_150257558.1|2740676_2741246_+|NAD(P)H-dependent-oxidoreductase	unknown	unknown	gnl|CDD|377026
NZ_CP029189.1|WP_030010722.1|2729099_2729789_-|response-regulator-transcription-factor	unknown	unknown	gnl|CDD|223816
NZ_CP029189.1|WP_150257552.1|2734707_2735304_-|histidine-phosphatase-family-protein	unknown	unknown	gnl|CDD|366010
NZ_CP029189.1|WP_150261839.1|2726837_2727437_-|hypothetical-protein	unknown	unknown	gnl|CDD|235002
NZ_CP029189.1|WP_150257549.1|2731253_2732132_-|spermine-synthase	unknown	unknown	gnl|CDD|223498
NZ_CP029189.1|WP_150257545.1|2726128_2726791_-|NADP-oxidoreductase	unknown	unknown	gnl|CDD|224996
NZ_CP029189.1|WP_150257554.1|2736598_2738182_+|hypothetical-protein	unknown	unknown	unknown
NZ_CP029189.1|WP_150261840.1|2744384_2746307_+|EAL-domain-containing-protein	unknown	unknown	gnl|CDD|236645
NZ_CP029189.1|WP_150257551.1|2732815_2734132_+|tetratricopeptide-repeat-protein	unknown	unknown	unknown
NZ_CP029189.1|WP_150257547.1|2729868_2730429_+|hypothetical-protein	unknown	unknown	gnl|CDD|236776
NZ_CP029189.1|WP_150257559.1|2741583_2741925_+|hypothetical-protein	unknown	unknown	unknown
NZ_CP029189.1|WP_150257548.1|2730452_2731091_-|methyltransferase-domain-containing-protein	unknown	unknown	gnl|CDD|379312
NZ_CP029189.1|WP_150257553.1|2735414_2736611_+|hypothetical-protein	unknown	unknown	unknown
NZ_CP029189.1|WP_150257555.1|2738178_2739519_+|AAA-family-ATPase	unknown	unknown	gnl|CDD|350799
NZ_CP029189.1|WP_150257546.1|2727685_2729092_-|HAMP-domain-containing-protein	unknown	unknown	gnl|CDD|223715
NZ_CP029189.1|WP_150257556.1|2739597_2740059_+|hypothetical-protein	unknown	unknown	unknown

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NZ_CP029189.1|WP_150257557.1|2740078_2740561_-|MarR-family-transcriptional-regulator	gnl|CDD|224759	COG1846, MarR, Transcriptional regulators [Transcription].	8.32633e-11
NZ_CP029189.1|WP_150257560.1|2742838_2744074_-|M6-family-metalloprotease-domain-containing-protein	gnl|CDD|274507	TIGR03296, hypothetical_protein, M6 family metalloprotease domain. This model describes a metalloproteinase domain, with a characteristic HExxH motif. Examples of this domain are found in proteins in the family of immune inhibitor A, which cleaves antibacterial peptides, and in other, only distantly related proteases. This model is built to be broader and more inclusive than pfam05547.	6.44645e-45
NZ_CP029189.1|WP_150257558.1|2740676_2741246_+|NAD(P)H-dependent-oxidoreductase	gnl|CDD|377026	pfam03358, FMN_red, NADPH-dependent FMN reductase.	1.02587e-35
NZ_CP029189.1|WP_030010722.1|2729099_2729789_-|response-regulator-transcription-factor	gnl|CDD|223816	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription].	2.68916e-67
NZ_CP029189.1|WP_150257548.1|2730452_2731091_-|methyltransferase-domain-containing-protein	gnl|CDD|379312	pfam13649, Methyltransf_25, Methyltransferase domain. This family appears to be a methyltransferase domain.	8.23627e-10
NZ_CP029189.1|WP_150257552.1|2734707_2735304_-|histidine-phosphatase-family-protein	gnl|CDD|366010	pfam00300, His_Phos_1, Histidine phosphatase superfamily (branch 1). The histidine phosphatase superfamily is so named because catalysis centers on a conserved His residue that is transiently phosphorylated during the catalytic cycle. Other conserved residues contribute to a 'phosphate pocket' and interact with the phospho group of substrate before, during and after its transfer to the His residue. Structure and sequence analyses show that different families contribute different additional residues to the 'phosphate pocket' and, more surprisingly, differ in the position, in sequence and in three dimensions, of a catalytically essential acidic residue. The superfamily may be divided into two main branches. The larger branch 1 contains a wide variety of catalytic functions, the best known being fructose 2,6-bisphosphatase (found in a bifunctional protein with 2-phosphofructokinase) and cofactor-dependent phosphoglycerate mutase. The latter is an unusual example of a mutase activity in the superfamily: the vast majority of members appear to be phosphatases. The bacterial regulatory protein phosphatase SixA is also in branch 1 and has a minimal, and possible ancestral-like structure, lacking the large domain insertions that contribute to binding of small molecules in branch 1 members.	1.79469e-52
NZ_CP029189.1|WP_150261839.1|2726837_2727437_-|hypothetical-protein	gnl|CDD|235002	PRK02110, PRK02110, disulfide bond formation protein B; Provisional.	0.000372348
NZ_CP029189.1|WP_150257549.1|2731253_2732132_-|spermine-synthase	gnl|CDD|223498	COG0421, SpeE, Spermidine synthase [Amino acid transport and metabolism].	1.86029e-20
NZ_CP029189.1|WP_150257545.1|2726128_2726791_-|NADP-oxidoreductase	gnl|CDD|224996	COG2085, COG2085, Predicted dinucleotide-binding enzymes [General function prediction only].	1.07416e-26
NZ_CP029189.1|WP_150257547.1|2729868_2730429_+|hypothetical-protein	gnl|CDD|236776	PRK10856, PRK10856, cytoskeleton protein RodZ.	0.000401585
NZ_CP029189.1|WP_150257555.1|2738178_2739519_+|AAA-family-ATPase	gnl|CDD|350799	cd18041, DEXXQc_DNA2, DEXXQ-box helicase domain of DNA2. DNA2 (DNA Replication Helicase/Nuclease 2) possesses different enzymatic activities, such as single-stranded DNA (ssDNA)-dependent ATPase, 5-3 helicase, and endonuclease activities, and is involved in DNA replication and DNA repair in the nucleus and mitochondrion. It is involved in Okazaki fragment processing by cleaving long flaps that escape FEN1: flaps that are longer than 27 nucleotides are coated by replication protein A complex (RPA), leading to recruit DNA2 which cleaves the flap until it is too short to bind RPA and becomes a substrate for FEN1. It is also involved in 5-end resection of DNA during double-strand break (DSB) repair; it is recruited by BLM and mediates the cleavage of 5-ssDNA, while the 3-ssDNA cleavage is prevented by the presence of RPA. DNA2 is a member of the DEAD-like helicase superfamily, a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.	5.01594e-09
NZ_CP029189.1|WP_150257546.1|2727685_2729092_-|HAMP-domain-containing-protein	gnl|CDD|223715	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms].	5.06522e-30
NZ_CP029189.1|WP_150261840.1|2744384_2746307_+|EAL-domain-containing-protein	gnl|CDD|236645	PRK10060, PRK10060, cyclic di-GMP phosphodiesterase.	1.98424e-107

Protein sequences

>NZ_CP029189.1|WP_150257551.1|2732815_2734132_+|tetratricopeptide-repeat-protein
MAASPHSPNSTFRRLRGQHSPAEFAALVRRAAKEIGETVSCDARYIGRVESGEIRCPNYAYERVFLHMFPGRTLADLGFSPRESVRGRSAHRDPRSPSSSKESDVLRRAFMAGGSATVAAATLSLTLLGDTRRLPSRAGETEAAAVEDAVRQIRLLDDRHGADALYRRAAEPLRTAYALLDAGATRQSTEDRLHSGAGELAVSVGWLAHDSGRFDDARSHYAEALATARVARDPGLEAHAFSNMAFLARDCGRSREAVRAAQAGLRAARSLGSPRLLSLLALREAGGWAGLADRKACEEALARAHTEFARGESEADPEWMSFFGQAELESLEARCWSTLGEHARAARHARRAADLQDPHFARNVALYTAELAGDLARAGAPDEAAWAGGRVLDLLTEVQSTRVRSMLAETAAALVPHQRSPRVETFLTRHAPAGRSAV
>NZ_CP029189.1|WP_150257550.1|2732177_2732573_-|hypothetical-protein
MESTGTNSPAPDLDLDLVTVPTRQGLEAVDIIRRAASQAGGVGPVLHDGSGDTLGFLVPSGTADAWDLPGSACTQTNGRGMRFGDDVVSPAAGATGWLLPPEAVGPVTDPDVLRAALGEAARLIEAADNCR
>NZ_CP029189.1|WP_150257549.1|2731253_2732132_-|spermine-synthase
MAGKDRNKDRQRGRGGAEAVVGQVDGGRAELEPDRERAGAWTLLIDGAPQSHVDLGDPGYLDFAYQRRIGHLIDLVAPARQPLNVVHLGGGAFTLARYTAASRPRSTQQVVEIDAALVAFVREHLPLDPQARVRVRAVDARAGLAKVPDGWADLVIADVFSGARTPAHLTSAEFLDDVRRALAPDGWYVANLADGPPLTHLRGQIATAASRFAELALAADPVVWRGKRFGNAVLVAADRELPVAEFTRRVASDPHPGRVEHGRALVGFAGGAAPVADASAVASPQPPPSVFR
>NZ_CP029189.1|WP_150257548.1|2730452_2731091_-|methyltransferase-domain-containing-protein
MSETPGSPPPGTPSTPGTTTSDYTRRLARLEVSGLKRFLPTQAPYRWNLRRLHLGRVLDVGCGLGRNLLNCGPGSVGVDHNPHSVRTCRERGLNAYTPDELATAPDCGPGSFDSLLIAHVLEHVDEETAGALLDLYLPLVKPGGAVVMITPQEVGYRSDATHIRWVGFEELRAHAGRAGIAVRRTYSFPFPRPVGKVFPYNEFVLVGTVAAQ
>NZ_CP029189.1|WP_150257547.1|2729868_2730429_+|hypothetical-protein
MRRGLLHAMAWMLATGAAVTLSWWGVHAVMSGTAYDRPLAVPLTGHPLSSSTHSAQASPSPSSTPSSSGSASPSPSGSPAPEASPTAAGGSAGKSPEPSAASGAYRRAEGQDAGKVQAYPVSGGRVVFSLGASSAELVSATPAAGWRMQVWKQDFWIRVTFTKDGREVSVFCTWHDHPPMVEIVDP
>NZ_CP029189.1|WP_030010722.1|2729099_2729789_-|response-regulator-transcription-factor
MASVLVVEDDQFVRSALIRHLTEASHTVRSVGTALEALREVAHHRFDVVILDLGLPDLDGSEALKMLRGITDVPVIIATARDDEAEIVRLLNDGADDYLTKPFSVEHLSARMSAVLRRARAAAGAEPPSRVLRVGGLAIDPLRRQAELDGAVLDLTRREFDLLAFLAGRPGVVVARRELLAEVWQQSYGDDQTIDVHLSWLRRKLGETAARPRYLHTLRGVGVKLEPPR
>NZ_CP029189.1|WP_150257546.1|2727685_2729092_-|HAMP-domain-containing-protein
MRWALVKVCLAVTAMVVVAFAVPLGLVVQEMASDRAFSNAERQAASIGPTLSITTDPVQLRKAVESTQMGAARRMAVHVPAIGDSPPVDIGQGRAGERAVAETRRMGRATTAKVSGGGSALLQPTALGSGDIAVVEIFVPESEVSNGVATAWLVLAGVGLALIVGSVGVADRLGARLVRPAERLADAAHQLGEGRLGARVPEDGPKELRSAAAAFNAMADQVVELLANERELAADLSHRLRTPLTVLRLNTASLGDGPAAEQTRAAVEQLEREVDTIIRTAREQRPATGPGAGAGAGCDASEVIRDRMAFWSALAEDEGREVRLAGVDRTVRIPVARPELAAALDAMLGNVFRHTPEGTPFAVDVHDAGDAVIVLVSDAGPGISDPDAALRRGNDGGRDGSTGLGLDIVRRVAESTGGDVRLGRSVLGGTEVRVWIGLDGRSLGGPGAGRAGRGRRGNRRNRGRASQE
>NZ_CP029189.1|WP_150261839.1|2726837_2727437_-|hypothetical-protein
MGRAQYWFACTFALGWTGVVCAGLYDQLGPGGQACPLCVAQRMFMLLAALGAAYIIRSALISGVVTARVYMTGWGMSLVAAIGGSFTSWRQTTLQVLPGAKGYGSEVLGLHLYHWAWILFQLSVVAIGVALAFAHTTADRAVPAVRPGALRTAGMCALWFLGLVIGVSMLVVFLEEGFHWFLPGHPKQYRFFYDVGIMG
>NZ_CP029189.1|WP_150257545.1|2726128_2726791_-|NADP-oxidoreductase
MRYAVLGTGIVGRTVAARLDGLGHQVVIGTRDPEATAGRDEYAQWHQTHPGIALAPFAEAARDGEILVNATGGRSGIAALTEADAAHLDGKVLVDIANPLDFSAGFPPVLDPVNDDSLGELIQRTFPRLRVVKTLNTMNCQIMVDPARVPGEHHVFLSGEDAEAKKSVRELLYAFGWPEASVLDLGGIETARGTEMLLPVWLRLMGALGHADFNFHVQGA
>NZ_CP029189.1|WP_150257544.1|2725697_2725991_-|hypothetical-protein
MRVMLRAHMDTAATNEGIKTGAMPQAIKTLMDRVKPEAAYFGLHEGVRSCWIVFDLQDSAQMPPLMEDLFLQFNAEVEVAPVMNAEDLARGLAAMGT
>NZ_CP029189.1|WP_150257552.1|2734707_2735304_-|histidine-phosphatase-family-protein
MAPRILLARHGQTAWSQLGKHTGRTDVPMLEEGRQGAKLLGERLARDPWRGLPGVEVRTSPLVRASESCDLAGFGARAEPWDALMEWDYGDYEGMTPAEIQAVRPGWLIWRDGVPGGESVADVAARADEVIAWARSAERDVLVFAHGHILRTLAARWLGFDASFGARIRLEPTSLSVLGWAYGSAALERWNDTGHLDA
>NZ_CP029189.1|WP_150257553.1|2735414_2736611_+|hypothetical-protein
MSSYPPSSPAQPTTLRQRLAGLRGPAVPPRPLDARALAALAANPGCGRRALLDGAGVDKTALASALGSPASFGQSQFAIVRGNSFEAKVKGDGGAELLRLVHGHLDPAAEPPGAAARVPDLTAAGPEGRAARTALALREATAAGRDSGAWTLLDHPMLALEVAGSPAYLEPDAVVVHPDGRWTVVEIKSFPMIDGAADAAKVGAAARQAAVYVLALEKTAAKLPGAEVGHTVLLVCPKDFSNLPTASPVDVRRERAVTRRQLERLTRVEELAAALPEGLSFDPATRTAEELTRAVSAVDAAYAPECLAACELAFHCRDRARAADQVTALGRSVRGELGTLTTVEAALAAAAGAAPGAGGPEDPTAAALHRAARLRAEALELAAARPTHPAPETPACPC
>NZ_CP029189.1|WP_150257554.1|2736598_2738182_+|hypothetical-protein
MPLLSTLARLEAVRAGRAQPLATVRHRHLGERPMVFVPLTTAGEAGAPLGAMVGSDRHEPRVFVIPQPRDRDRRWAFLAELAVEVLAHIDAYADVVEPAERSETDPETGKRVKVETELCVDAPQLIVPSRAGIEYVRLLGRSMRFRRTAEEDPENPYPAPSQVPMLGRWFTHLAERSRVPGSSMLLSATDLLSRHWATGQSNLEDQHLGALLGWIDPPAGRSGAEAAHRAELGRDEDGQLLCPPAGPATDPAFDNKLLAPAIARYDAARTALAAGPGDDDRHVRTAEQEVHRLVETQLSSTWRMTWEAIDLLRSLPPGERAEERWTRDRWSYTGHRDRVRAGEPPQPRRDDAVTAAQKLATRETEQVRLDAQEALDDPLVMAGRRFAGEAFAGEVTEVVMEWTESKRPSPRPLVTVVTEDLPQLAEEGGGKVFRSLDGRPQSAQFVRFEGDGRLVLRLLDKMGRGRDPDPGTVPEKGDRLCWTLFEHDARGGPKLPEPEQTPWTHGGPPGSAGALPLPDSVTDEDLL
>NZ_CP029189.1|WP_150257555.1|2738178_2739519_+|AAA-family-ATPase
MTTTAPFDPGAAAARATAAILADTLHGSERGVVVDSPPGAGKSTLVVRAARELAAAGRRLMVVAQTNAQVDDLVLRLADKDPELKVGRLHSSDGDAYDPALRELASVTLSAKPKDLAELPITISTAAKWAFVKDVEPWQHAIVDEAYQMRSDALLAVAGLFERALFVGDPGQLDPFSVVGAEQWAGLSYDPSASAVSTLLAHNPQLPQHRLPVSWRLPASAAPLVSRAFYPYTQFRSGTGPGERRLSYGVPSDGSGPDRVLDEAAEAGWGLLELPARHTPRTDPEAVRAVALVVRRALDRGAVTSDEQSPSPAPLTADRIAVGTAHRDQAAAVRAALASLGVTGVTVDTANRLQGREYDLTVVLHPLSGRPDATAFHLETGRLCVLASRHRHACVVVARAGIAELLDDHPSTEPVQLGVTVKFPDGWEANHSVLAHLSEHRVPWRP
>NZ_CP029189.1|WP_150257556.1|2739597_2740059_+|hypothetical-protein
MMSVRRKRITIWLAATAAAATLTFGGWYAYQVSAAMVGTLGVPCDRAAKFVRAAELPAGTHDRRCTTGQWLSISYELDFRAPREETEAWLRASYPDTEPSREYCSGADACANPQQKPVPASDKDGHRLADGVGVELDYEDGGVAHVRVSGWTI
>NZ_CP029189.1|WP_150257557.1|2740078_2740561_-|MarR-family-transcriptional-regulator
MTPAPEPGPRWLTESEQDAWYAWRRMFPLVNAEIARDLSQDSGLSEADYDVLSVLGSTDGHRMRISALAELMRWSRSRLSHQLTRMEQRGAVRREEVAADGRGAEVVLTDAGIATITDAAPLHVESVRRHLIDVLTPDQLRTLAEVGETLHARTGARRKP
>NZ_CP029189.1|WP_150257558.1|2740676_2741246_+|NAD(P)H-dependent-oxidoreductase
MTRLHVISAATRPTSSGRPLARWVTEQARERGGFDVTPVDLAEIALPFLDEPEYASTGNYAHQHTRDWSALVDSADAFLFVLPMYNGGFTAPFKNAIDFLYNEWKGKPVGIVSYSAGPTGGVPAAEMLLPVLTRLGMLPAEHSAAVPGIPKLVGPEGFQAPETLVGELAAVLDDVAELAAKRAAEAVTV
>NZ_CP029189.1|WP_150257559.1|2741583_2741925_+|hypothetical-protein
MAEPERTERRLRPAPLLFEPSEAVADPEHFFDLESIEDPRELLARATELTLAFRAAQERAVEFQALAAAQLADPRRFDRLSPALIAERAEWTEDYARKMIEFGESLQRGAGTP
>NZ_CP029189.1|WP_150257560.1|2742838_2744074_-|M6-family-metalloprotease-domain-containing-protein
MARQQTPGGVERSRIRSTAAALTSLTALAAMSLVAGPAVADSGSAPCALTRTSAHHSLGLDTWNGAYPRPERTLNAVMVFLSFPDHRSTLKTEEIVGDYFPATSDFFEQASYGRFRLVPHPQKKWIQMPKPSTAYGIKRDWAAGDRASYLRDAVATADAQVDFRKYDVVYFVADPDAPGVDSDATKVVNFEHPIVADGTELRRIVTVFERHPPDRNVLAHETGHVFDLPDLYHRPTDGKGDWDTYVGDWDVMGSQFGMAPDLFAWHKWKLGWLDASQVDCVQSGSSMHTLQPLAQAPPSGATGGTRLAVIRTGPGSAIAVEARGSAGNDGDTCTEGVLVYRVRNEASSGGGPIEVLDAHPSTEACWDRSVYPPLADAPLEVGETYTVPGERITIEVADRTRSGAYTVKITT
>NZ_CP029189.1|WP_150261840.1|2744384_2746307_+|EAL-domain-containing-protein
MRGHSRTLREPTVSGTSEGTGSAADSIRSAITERHPAVPAVPSASATPAAPPSPYRAADSDLRDYRAAFNAAHLAMAVVDREGYVVAANQAFAGLLGSEPHALVHRSAADLVDLAAEARTWAAYQEVLRGRQARLRCTRRLKHPDGHSLWTEVTLGPVPGTGDVLLSVADISDRRDLQARLRHLQMHDPVTRLPNRALFFERLSAALEAASYEHGGGTGRIGLCYLDLDGFKAVNDTLGHRVGDRLLTAVAARLTQCADQSGYGRTGGHLVARLGGDEFALLVEDSTGTEQLADLARSVLTAVQEPFDLAGQRLSVSASIGVVERTAAGTSATGLMQAADTTLYWAKADGKARWTLFDPERNAHRMTRQALSSTLRPAVERGEFELEYQPLVDLESGAVRGVEALVRWNHPQFGTLTPNRFIGIAEEDGSIVQLGQWVLRTACRQARRWQIEQPSDCPVFVSVNVAVRQVWDSDLVGDVAEILAETGLAPQLLQLELTESAVMGSAGRPLQALQALSDMGVRIAIDDFGTGYSNLAYLSRLPVSVLKLDGSFVRGFRYEEGTHPNPADETIVEALVQLAHRLGLTVTAECVETAGQAARLRRVGCDTGQGWLYSRAVAPERIAEMIGTRPGAEPHEPRPT

Crispr_ID: NZ_CP029189_12

• CRISPR_ID: NZ_CP029189_12
• CRISPR_location: 3357803-3357896
• CRISPR_type: Orphan
• Repeat_type: NA
• Spacer_info: 1 spacers
• Cas_protein_info: WYL

Consensus repeat of NZ_CP029189_12

Consensus_repeat	Method
CCCCGTATTCCAGCCCCGCCGGCG	CRISPRCasFinder

spacers of NZ_CP029189_12

>12.1|3357827|46|NZ_CP029189|CRISPRCasFinder
ACACTCCAGCCCCGCCGGCGTTTGAGGCGCGGGGTCCGGGGCGGAG

CRISPR arrays and Neighbor proteins around NZ_CP029189_12

CRISPR arrays

The CRISPR arrays of NZ_CP029189_12

>merge|NZ_CP029189|12|3357803-3357896|CRISPRCasFinder
CCCCGTATTCCAGCCCCGCCGGCGACACTCCAGCCCCGCCGGCGTTTGAGGCGCGGGGTCCGGGGCGGAGCCCCGTATTCCAGCCCCGCCGGCG

>NZ_CP029189|12|11|3357803-3357896|CRISPRCasFinder
CCCCGTATTCCAGCCCCGCCGGCG	ACACTCCAGCCCCGCCGGCGTTTGAGGCGCGGGGTCCGGGGCGGAG
CCCCGTATTCCAGCCCCGCCGGCG

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP029189.1|WP_030727652.1|3366096_3366471_-|hypothetical-protein	unknown	unknown	unknown
NZ_CP029189.1|WP_150257973.1|3354839_3355481_+|hypothetical-protein	unknown	unknown	gnl|CDD|237030
NZ_CP029189.1|WP_150257976.1|3358770_3359442_+|hypothetical-protein	unknown	unknown	gnl|CDD|226789
NZ_CP029189.1|WP_150257974.1|3355695_3357789_+|AAA-family-ATPase	unknown	unknown	gnl|CDD|226482
NZ_CP029189.1|WP_150257977.1|3361742_3362654_-|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl|CDD|379352
NZ_CP029189.1|WP_150257971.1|3353586_3354354_-|DUF2029-domain-containing-protein	unknown	unknown	gnl|CDD|172015
NZ_CP029189.1|WP_150257972.1|3354443_3354623_-|hypothetical-protein	unknown	unknown	unknown
NZ_CP029189.1|WP_150257966.1|3347640_3350127_+|DNA-binding-protein	WYL	COG2378_WYL_CAS-I:CAS-III	gnl|CDD|379300
NZ_CP029189.1|WP_150257978.1|3363213_3364437_+|serine-hydrolase	unknown	unknown	gnl|CDD|365903
NZ_CP029189.1|WP_150261925.1|3366805_3367648_+|SIS-domain-containing-protein	unknown	unknown	gnl|CDD|224651
NZ_CP029189.1|WP_150257975.1|3357959_3358646_-|copper-homeostasis-protein-CutC	unknown	unknown	gnl|CDD|281866
NZ_CP029189.1|WP_150257970.1|3351985_3353629_+|DEAD/DEAH-box-helicase	unknown	unknown	gnl|CDD|223989
NZ_CP029189.1|WP_150257979.1|3367679_3368609_+|N-acetylmuramic-acid-6-phosphate-etherase	unknown	unknown	gnl|CDD|235467
NZ_CP029189.1|WP_150257965.1|3346549_3347554_-|hypothetical-protein	unknown	unknown	gnl|CDD|237057
NZ_CP029189.1|WP_150257967.1|3350138_3350426_+|hypothetical-protein	unknown	unknown	unknown
NZ_CP029189.1|WP_150261923.1|3359505_3360720_+|Cmx/CmrA-family-chloramphenicol-efflux-MFS-transporter	unknown	unknown	gnl|CDD|225371
NZ_CP029189.1|WP_150257968.1|3350394_3351024_+|DUF4291-family-protein	unknown	unknown	gnl|CDD|379483
NZ_CP029189.1|WP_030766289.1|3365819_3366089_-|DUF4031-domain-containing-protein	unknown	unknown	gnl|CDD|379076
NZ_CP029189.1|WP_150261924.1|3360729_3361602_-|hypothetical-protein	unknown	unknown	unknown
NZ_CP029189.1|WP_150257969.1|3351043_3351586_-|DoxX-family-membrane-protein	unknown	unknown	gnl|CDD|225168

HMMScan for Signature genes

Protein	Cas_name	Cas_description	E-value	Identity	Coverage
NZ_CP029189.1|WP_150257966.1|3347640_3350127_+|DNA-binding-protein	WYL	COG2378_WYL_CAS-I:CAS-III	9.9e-11	36.4	0.3

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NZ_CP029189.1|WP_150257973.1|3354839_3355481_+|hypothetical-protein	gnl|CDD|237030	PRK12270, kgd, multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit.	4.46004e-05
NZ_CP029189.1|WP_150257976.1|3358770_3359442_+|hypothetical-protein	gnl|CDD|226789	COG4339, COG4339, Uncharacterized protein conserved in bacteria [Function unknown].	2.18888e-46
NZ_CP029189.1|WP_150257974.1|3355695_3357789_+|AAA-family-ATPase	gnl|CDD|226482	COG3973, COG3973, Superfamily I DNA and RNA helicases [General function prediction only].	4.5541e-67
NZ_CP029189.1|WP_150257977.1|3361742_3362654_-|helix-turn-helix-domain-containing-protein	gnl|CDD|379352	pfam13730, HTH_36, Helix-turn-helix domain.	2.08135e-05
NZ_CP029189.1|WP_150257971.1|3353586_3354354_-|DUF2029-domain-containing-protein	gnl|CDD|172015	PRK13375, pimE, mannosyltransferase; Provisional.	6.03402e-20
NZ_CP029189.1|WP_150257966.1|3347640_3350127_+|DNA-binding-protein	gnl|CDD|379300	pfam13625, Helicase_C_3, Helicase conserved C-terminal domain. This domain family is found in a wide variety of helicases and helicase-related proteins.	1.02847e-40
NZ_CP029189.1|WP_150257978.1|3363213_3364437_+|serine-hydrolase	gnl|CDD|365903	pfam00144, Beta-lactamase, Beta-lactamase. This family appears to be distantly related to pfam00905 and PF00768 D-alanyl-D-alanine carboxypeptidase.	1.59069e-56
NZ_CP029189.1|WP_150261925.1|3366805_3367648_+|SIS-domain-containing-protein	gnl|CDD|224651	COG1737, RpiR, Transcriptional regulators [Transcription].	1.92269e-66
NZ_CP029189.1|WP_150257975.1|3357959_3358646_-|copper-homeostasis-protein-CutC	gnl|CDD|281866	pfam03932, CutC, CutC family. Copper transport in Escherichia coli is mediated by the products of at least six genes, cutA, cutB, cutC, cutD, cutE, and cutF. A mutation in one or more of these genes results in an increased copper sensitivity. Members of this family are between 200 and 300 amino acids in length are found in both eukaryotes and bacteria.	5.50008e-23
NZ_CP029189.1|WP_150257970.1|3351985_3353629_+|DEAD/DEAH-box-helicase	gnl|CDD|223989	COG1061, SSL2, DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair].	4.21817e-109
NZ_CP029189.1|WP_150257979.1|3367679_3368609_+|N-acetylmuramic-acid-6-phosphate-etherase	gnl|CDD|235467	PRK05441, murQ, N-acetylmuramic acid-6-phosphate etherase; Reviewed.	2.64483e-159
NZ_CP029189.1|WP_150257965.1|3346549_3347554_-|hypothetical-protein	gnl|CDD|237057	PRK12323, PRK12323, DNA polymerase III subunit gamma/tau.	1.58709e-05
NZ_CP029189.1|WP_150261923.1|3359505_3360720_+|Cmx/CmrA-family-chloramphenicol-efflux-MFS-transporter	gnl|CDD|225371	COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism].	1.39175e-80
NZ_CP029189.1|WP_150257968.1|3350394_3351024_+|DUF4291-family-protein	gnl|CDD|379483	pfam14124, DUF4291, Domain of unknown function (DUF4291). This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria and eukaryotes. Proteins in this family are typically between 190 and 214 amino acids in length. There are two conserved sequence motifs: VYQAY and RMTW.	8.45257e-111
NZ_CP029189.1|WP_030766289.1|3365819_3366089_-|DUF4031-domain-containing-protein	gnl|CDD|379076	pfam13223, DUF4031, Protein of unknown function (DUF4031). This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria and viruses. Proteins in this family are typically between 91 and 130 amino acids in length. There is a conserved HYD sequence motif.	6.90968e-36
NZ_CP029189.1|WP_150257969.1|3351043_3351586_-|DoxX-family-membrane-protein	gnl|CDD|225168	COG2259, COG2259, Predicted membrane protein [Function unknown].	2.80966e-11

Protein sequences

>NZ_CP029189.1|WP_150257974.1|3355695_3357789_+|AAA-family-ATPase
MPAHAPETTHDDPTPTTAPVDPLGRERAHLTASRSALRAMREDVQSLDIRDVTANWVNAAVLQAQIDDRIKALADLAHTPLFFGRLDYLHAPGADLAEGAEGEQFYIGRRHVHDADGDPMVIDWRAPVSQPFYRASKTDPQDVSLRRRFGYTGGELTAYEDEHLSDPGEAAAVSKLLQQEIERPRVGPMRDIVATIQPEQDKLVRSGLGGSVCVQGGPGTGKTAVGLHRVAYLLYAHRDRLARTGTLVIGPNRSFLHYIEQVLPALGELEVKQATVDDLVARADVEVRGTDSAETAVVKGDARMAQVLDRAVRSHVTRPTEPLMVVRGSRRWRVPAYELEEMVEELQKRDIRYGAAREALPQRIAHAVLVRMEQAGEAPDDRVQDAVARNAAVKAVVKEVWPAVEPAKLVLRLLSDPEFLALHAADVLTEDEQKLLLWPKPFRSVKSAKWSAADLVLIDEAADLVERTHSLGHVVLDEAQDLSPMQYRAVGRRCTTGSATVLGDLAQGTTPWATRSWEEALAHLGKPQAVLEELTAGFRVPREVIAYASRLLPSISPGLAPVSSVRETPGSLRVAEVPDLTAAVLAACRESLAHEGSIGLIAADARVPVLAEALSAAGLPFLSPGEETTAESRLTLVPASLAKGLEYDYVVLDEPAAIVDGEPDERTGLRRLYVCLTRAVSGLSVLHTAPLPEPLLP
>NZ_CP029189.1|WP_150257973.1|3354839_3355481_+|hypothetical-protein
MTHRSRTQRLALLSTATALVTAGLLPSTTAFAAPPHRAAAVASAVAAPTPPPTPAPTASPAESVKTTDPPSGITAELPGKAKVRSGAIPMEGGSIDARVYGVDTPDGATGFAVYDIPGDRLPLEDALKGFVDAYGLMGGGTLTSSDVRKTTVDGHPALDATLTGKEGDESMTGSIRFISDDDHLVMALTYGGAENEKDLEAMHQQLLDSLQIP
>NZ_CP029189.1|WP_150257972.1|3354443_3354623_-|hypothetical-protein
MSPATFTPIQGSRPSGADSDSRQRNGLGGMLRAVKIFAATAVSVVVLGEYTEDAGVIRH
>NZ_CP029189.1|WP_150257971.1|3353586_3354354_-|DUF2029-domain-containing-protein
MTPSPVPSRSPSSLAGVLLTGSLLLLGVLCIALRIPVADALVQGFSAAEWGPPTTYPPFAAILFTPAAWLPSGALKAVLVLGNAGLLALLITLSCRLAGLRSRPGPVLAATIGGLWLQPLFQAPLAGLINLALACLVLWDLGRPRSALGKGFALGVAAGITLAPAAIAAYLLLTRRVRAGLTALAASAGTALLGLLVLPEASAEFWTRHLADAARALVLDWPPLWVWCAPLLAVLTARACRSQPSASSSSASMIR
>NZ_CP029189.1|WP_150257970.1|3351985_3353629_+|DEAD/DEAH-box-helicase
MNGPLIVQSDKTLLLEVDHELAGAARRAIAPFAELERAPEHIHTYRITPLGLWNARAAGHDAEQVVDALVEYSRYPVPHALLVDVAETMARYGRLTLSKHPVHGLVLTSTDRPVLEEILRSKKIAPLVGARLDPDTVAVHPSERGQIKQTLLKLGWPAEDLAGYVDGEAHPIDLAEDGWALRPYQQQAVEGFWHGGSGVVVLPCGAGKTLVGAGAMAMAKATTLILVTNTVSARQWKHELVKRTSLTEDEIGEYSGTRKEIRPVTIATYQVLTTKRKGVYPHLELFDSRDWGLIVYDEVHLLPAPVFKFTADLQARRRLGLTATLVREDGRESDVFSLIGPKRFDAPWKEIEAQGYIAPADCVEVRVNLTESERLAYATAETEEKYRFCATTATKRKVTEALVAKHRGQQTLVIGQYIDQLDELGEHLDAPVIKGETSNAQREKLFNAFREGEISVLVVSKVANFSIDLPEATVAIQVSGTFGSRQEEAQRLGRVLRPKADGHEARFYSVVARDTIDQDFAAHRQRFLAEQGYAYRIMDADELLADG
>NZ_CP029189.1|WP_150257969.1|3351043_3351586_-|DoxX-family-membrane-protein
MTQARWDQPLFSTSAAPATTVTHDAGLLLLRLVVGLSMAGHGTMKLFGWFGGPGLTATGKGFSMAGYPAGDAMAVIAGLSETLGGLGLALGLLTPLAGAALTGVFINILDVRGLSAYFPPKGVELEVVLFAAVVALTLTGPGRFAVDHHLPVLRENRPRHALIALLVGAVAGFVVLLVRD
>NZ_CP029189.1|WP_150257968.1|3350394_3351024_+|DUF4291-family-protein
MAVGMTSRHPERMSDDVPNRQIRAAHTDTTITVYQAYSPSLGLPAARDGRFPPAWKRERMTWIKPSFLWMMYRCGWGTKADQETVLAVEITREGFDRALRDACLSHHVPDVHGDRAAWKESLRAAPARVQWDPERDLRLNPLPYRSLQLGLSGPASRAYADEWTVAIRDVTGLAREIRGLLGAGDEAAARALLPAETPYPAGPLPHLGA
>NZ_CP029189.1|WP_150257967.1|3350138_3350426_+|hypothetical-protein
MGRTVTVQGVVFELDELVAVHLQRGYTGGVLDLRTADGEHHTFELSIRDSAADHAAYLVLKYESGCYTETWPRWGGSRSAPAPKPDGRRDDEPSS
>NZ_CP029189.1|WP_150257966.1|3347640_3350127_+|DNA-binding-protein
MGTGRLTGRRDQEATVPEASTAAGSAGGSPAGNSPRSLAEALRARDDAALAALLRARPDLLGPVPGDVTQLATRAGTRASVVRALDRLDRFALQTAEALAVGPDPCPYPVLEGLLTGGEDERARAALPGALATLRDQALVWGDEDRLRLVRTARELLAPSASRPSPTGLGPTVAEATAGMSPTRVQEIVAAVGLPATHDPVSAVTALTGLFTDPERMSALLDEAPAEAHQVLGRLVWGPPYGEVTPNPTPPVRWLRDRGLLLPATARTVVLPREVALHLRGGLAHRDTAPVAPPVPAHREHRPQLVDANAAGQALAALATVEELVKSWEHAGPPVLRAGGLSVRDLKRTAAALDTTEQQAAFWAELAYAAGLLASDGEADERYAPTPAFDDWLELPPAERWSHLAAAWLPATRTAPLVGEQDAKGRTLSALGPELDRSAAPEVRRRVLELLGDLPEGGAPDPDALLARLAWERPVRGASDLRARLAHWTLAEAEVLGVTGRGALSGPGRALLEHRDPAPLLAPQLPEPVDHVLLQADLTAVAPGPLRRPLGDTLAVLADVESKGGATVYRFTPGSVRRALDAGHAAADLHAFLKEHSRTPVPQPLAYLIDDVARRHGHLRVGAASSYVRCDDDAMLGEILADKRSAGLGLRRLAPTVLAAQADPTVLLEGLRSMGYAPAAESRTGDVLVARADARRTPARSAPVPVPEGPPVPDATLLAAAVRAIRAGDVAATAVRKEPAAASASAVPGELPRTSAAETLATVQAAALTGSAVWIGYVNAEGAASQRVIAPVRVEGGFVTGYDHTADEVRTYALHRITGVAELADDQV
>NZ_CP029189.1|WP_150257965.1|3346549_3347554_-|hypothetical-protein
MGIESDHLVYEYLSRVGDLAQQRQLSSGDRMRLVSGLRDEIDRRRAKYDPDTPAAVRRILERIGTPEEVLDTLGSRQGGAPAPAAPADAGLSVPVQRGPGRPRGRNAPPARPAAEPENVPPHLAGLDELGPSGGAEPDWWRVSPGTYGAGPQVEGFAGGIEIPDLFKDGPQDEQAEKEAAPAPPGKDEGGARSLVRFLRERRRARKDAAAGAAGPDAPAAPAARPRPNAFLLLAAAVLVVGMVSGYWLLLVVGWFLPFASRVLGPAERKWAVFGPPGAVLAGAVLWVWGRMNGKWGETLPDDQLSGAMHGMWPWVLRGAALASAAYLVWRARRR
>NZ_CP029189.1|WP_150257975.1|3357959_3358646_-|copper-homeostasis-protein-CutC
MSNRALLEVIALDVEDAVAAQAGGADRLELVTDMAADGLTPPRETFAAIRAAVDIPLRVMLRRTDGFAAGDVSELVRAARELRAEGAQEFVLGFLDADGAPDLAAVEAVVAELDGCRWTFHRAIDRAADRDQLRKALADLPGLDTYLTAGSAAGVSAGLPVLLAEAERVGEPGYGARILVGGGLTLAHLPVLRAGGIDAFHIGGAARPSGWAGPVSAAAVAEWRAVLD
>NZ_CP029189.1|WP_150257976.1|3358770_3359442_+|hypothetical-protein
MDTGTPSSDTHPDTAGLRARWQATVTAAGAPADRDPAPYADRLLAAWAEPQRRYHTTAHLADVLARIDVLAPHAADPAAVQLAAWFHDAVYRPDRSENEERSAALAERALPELGIGPARTAEVARLVRLTVTHDPAPGDTDGEALCDADLAVLAGDPDAYAAYAAAVRAEYGFVPDDAFRTGRAAVLRQLLGLPRLFRTPYGAAHWEAPARANLAAELAALAP
>NZ_CP029189.1|WP_150261923.1|3359505_3360720_+|Cmx/CmrA-family-chloramphenicol-efflux-MFS-transporter
MPVAVYVLGLSVFALGTSEFMLSGLLPPIAEDMGVTIPQAGLLISAFAIGMVVGAPLLAVATLRLPRRTTLIALISLFGLGQVAGALAPTYELLFASRVVSAFACAGFWAVGAAVAIAMVDKDQRARAMAVMIGGLSIANVLGVPAGAFLGEHLGWRSAFWSVAAASAIALVGILALIPKIPLPAQRPSLGRELRIYRDRQVWLSIGVTALAAGGVFCAFSYLSPLLTDVAGLDSKWVPWILGLFGIGALAGTTVGGRVADAHLFGVMIWGITASTVFLTALALLAGAAAAAVALAFLLGFSAFFTAPALNARMFNVAGAAPTLAGATTTAAFNLGNTGGPWLGGTVIDAGLGFAATAWAGAAMTVTAIALTVLALRLDRRTPPRATRVVTGSSAPAAPAPTHA
>NZ_CP029189.1|WP_150261924.1|3360729_3361602_-|hypothetical-protein
MHRIFQEHPELFSRVSEVLGVDFAPPTSFTVLPNDLTETQPLERRVDTLLRFDTEGDGSFLLAVEAQGKKDPDKPASWAYYASYLLTKYRLQPMLLVVCQDRSTAEWAARPVSFGPPQWPLLTLCPLVAGPHNMPLITNPAEVRKDLALATLAAITHATNPDIGAILKAMTNVLRDTPAVLANPIVEFIAQGMGKHPSAALWRKLVAVDLSFYKSSLSEELRAEGRAEGRAEGEARRAAEDVLAVLAERGIDVPEAVRERIIGCGDAETLGRWLRRAVTAVSAGAIFGDG
>NZ_CP029189.1|WP_150257977.1|3361742_3362654_-|helix-turn-helix-domain-containing-protein
MDTQNTSARPDAQSRNDGENHPSRRTRARTRSGGVIHDNTRHTARFTVIGNHLAQHAELSLLAIGLAVHIQSLPGGALIDIRTLAARFPEGKTRIAAALRELEAHGYLRRTCERTSGGRVVTRTVSCNQPGRSGVTDRPRPTPRRAARQEGEPTRRALPAVPQPAYRAPDLLRSAVEVLAGLRRGDPRLLLSVTEVEHLAPGVAAWLERDLSPSAVHHALTADLPAEPLYRPAALVAHRLTAQLPPMPPFRVKAAPADPAAARNHPLQNCVLCDHAFRGPERGATCNGCRGRLTEPPGVHPSG
>NZ_CP029189.1|WP_150257978.1|3363213_3364437_+|serine-hydrolase
MGRYRTPTVLAAASLLLTALCAGQAPAAAPPGRVDIDPVIAEQLDDAITAAMHKAAIPGVGVGLWIDGEDPYVRAFGTSDKATGVPIKTDMHTRIGSVTKTFTVTAVLQLVDDGKVRLDAPISTYLDGVPGGDRITVRQLADMRSGLYNYTEDPSLLAAYKADPHRAWTPQELLDTAFRHPANFPPGTRWEYSNTNTVVLGLLVEKVGGQPLHTYLQQHVLEPADLDSTSLPTGAEIASPFVHGYTNFTPNGATVDASAWNPSWAWSAGAMISTMDDLHSWVPTLVTGKLPDGDRLLEPGTQAQRLRMLPTGHPDIGYGLGIAELDGWIGHNGELPGYETIAVRLPQARATMVIVVNSDVDGKFGNLSSLIANTVTKIVTPEHVWELPAAAQPNAVPEPSPNPSPSS
>NZ_CP029189.1|WP_030766289.1|3365819_3366089_-|DUF4031-domain-containing-protein
MTVYIDPPTWPGHGRMWSHLVSDVSYEELHAFAAAIGCPPRAFERDHYDVPSYRYADAVGAGAVEIGSKELVRRLTAAGLRRPKGRPAA
>NZ_CP029189.1|WP_030727652.1|3366096_3366471_-|hypothetical-protein
MDHATPLEQALHVARALVLADLAAGEVADADVVSLVEDSVTHRRWWVEQWPEGVDYLAGLVAQDVKDALLEKYGRWPLCPVCNHGEPHALDVEPELGPDPHWVCSEAGVKVAAIGGLGPVFGLR
>NZ_CP029189.1|WP_150261925.1|3366805_3367648_+|SIS-domain-containing-protein
MRSLGPSMTRSVQAVAEAVAADPAGCARLTVSALAEHTGTSEATVVRTARLLGYPGYRDLRLALAALAAQQESGAASAVTVDIAVDDPLADVVAKLAHEEAQTLTDTAAALDLTQLAAAVTALATARRIDIYGVGASALVGQDLAQKLQRIGLLAHAHGDPHLAVTGAVQLRPGDVAVAITHSGTTGDVIEPLRTAFERGATTLALTGRPGSPVTRHADLVLATSAARETRLRPAAMSSRTSQLLVVDCLFVGVAQQTYETAAPALAASYEALAHRHTAR
>NZ_CP029189.1|WP_150257979.1|3367679_3368609_+|N-acetylmuramic-acid-6-phosphate-etherase
MTAHADLRAQLDTLTTEAFRPELAEIDRLPTLDIARTMNAEDATVPAAVAAQLPHIAAAVDAIAERMSRGGRLVYAGAGTAGRLGVLDASECPPTFNTDPGDVVGLIAGGPSALVTSVEGAEDSKELAVADLTALEIGPHDTVVGVSASGRTPYALGAVEFARTRGALTVGLSCNAGSALAAAADHGIEVVVGPELLTGSTRLKAGTAQKLVLNLISTITMIRLGKTYGNLMVDMRSSNEKLRARARRIVALATGAPDEEIEAALTATGGEVKNAVLVVLGGVDGPTAAELLAASQGHLRAALALAPTR

Crispr_ID: NZ_CP029189_13

• CRISPR_ID: NZ_CP029189_13
• CRISPR_location: 3468949-3469049
• CRISPR_type: Orphan
• Repeat_type: NA
• Spacer_info: 1 spacers

Consensus repeat of NZ_CP029189_13

Consensus_repeat	Method
CCCCTCAGCCCCGTCGGCGTTTGAGGCGCGGG	CRISPRCasFinder

spacers of NZ_CP029189_13

>13.1|3468981|37|NZ_CP029189|CRISPRCasFinder
GGCCCGGGGCGGAGCCCCGATCTTCCAGCCCCGCCGC

CRISPR arrays and Neighbor proteins around NZ_CP029189_13

CRISPR arrays

The CRISPR arrays of NZ_CP029189_13

>merge|NZ_CP029189|13|3468949-3469049|CRISPRCasFinder
CCCCTCAGCCCCGTCGGCGTTTGAGGCGCGGGGGCCCGGGGCGGAGCCCCGATCTTCCAGCCCCGCCGCCCCCTCAGCCCCGCCGGCGTTTGAGGCGCGGG

>NZ_CP029189|13|12|3468949-3469049|CRISPRCasFinder
CCCCTCAGCCCCGTCGGCGTTTGAGGCGCGGG	GGCCCGGGGCGGAGCCCCGATCTTCCAGCCCCGCCGC
CCCCTCAGCCCCGCCGGCGTTTGAGGCGCGGG

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP029189.1|WP_008742369.1|3478082_3478703_-|DUF47-domain-containing-protein	unknown	unknown	gnl|CDD|224310
NZ_CP029189.1|WP_150258062.1|3474063_3475056_+|phosphate-ABC-transporter-permease-subunit-PstC	unknown	unknown	gnl|CDD|273992
NZ_CP029189.1|WP_030009310.1|3478909_3479224_+|metal-sensitive-transcriptional-regulator	unknown	unknown	gnl|CDD|376835
NZ_CP029189.1|WP_150258059.1|3467943_3468870_+|mycothiol-synthase	unknown	unknown	gnl|CDD|132489
NZ_CP029189.1|WP_150261939.1|3458677_3459721_-|MerR-family-transcriptional-regulator	unknown	unknown	gnl|CDD|133382
NZ_CP029189.1|WP_150261941.1|3469452_3471612_+|RNA-degradosome-polyphosphate-kinase	unknown	unknown	gnl|CDD|235469
NZ_CP029189.1|WP_150258057.1|3465073_3465856_+|alpha/beta-fold-hydrolase	unknown	unknown	gnl|CDD|223669
NZ_CP029189.1|WP_150258061.1|3472796_3473933_+|phosphate-ABC-transporter-substrate-binding-protein-PstS	unknown	unknown	gnl|CDD|273374
NZ_CP029189.1|WP_150258064.1|3476166_3476943_+|phosphate-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl|CDD|184587
NZ_CP029189.1|WP_150258060.1|3471592_3472549_+|CHAD-domain-containing-protein	unknown	unknown	gnl|CDD|214880
NZ_CP029189.1|WP_150258058.1|3465956_3467774_-|bifunctional-metallophosphatase/5'-nucleotidase	unknown	unknown	gnl|CDD|277357
NZ_CP029189.1|WP_150258065.1|3477078_3478077_-|inorganic-phosphate-transporter	unknown	unknown	gnl|CDD|376541
NZ_CP029189.1|WP_150258056.1|3464382_3464952_-|TetR-family-transcriptional-regulator	unknown	unknown	gnl|CDD|366102
NZ_CP029189.1|WP_150258053.1|3459880_3461107_+|trypsin-like-serine-protease	unknown	unknown	gnl|CDD|273938
NZ_CP029189.1|WP_150258055.1|3461910_3463353_+|HAMP-domain-containing-protein	unknown	unknown	gnl|CDD|223715
NZ_CP029189.1|WP_150258054.1|3461182_3461914_+|response-regulator	unknown	unknown	gnl|CDD|223816
NZ_CP029189.1|WP_150261940.1|3463332_3464199_-|phosphatidylinositol-specific-phospholipase-C-domain-containing-protein	unknown	unknown	gnl|CDD|176528
NZ_CP029189.1|WP_150258052.1|3457647_3458670_+|LacI-family-DNA-binding-transcriptional-regulator	unknown	unknown	gnl|CDD|224525
NZ_CP029189.1|WP_150258066.1|3479744_3480575_-|hypothetical-protein	unknown	unknown	unknown
NZ_CP029189.1|WP_150258063.1|3475055_3476138_+|phosphate-ABC-transporter-permease-PstA	unknown	unknown	gnl|CDD|223654

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NZ_CP029189.1|WP_008742369.1|3478082_3478703_-|DUF47-domain-containing-protein	gnl|CDD|224310	COG1392, COG1392, Phosphate transport regulator (distant homolog of PhoU) [Inorganic ion transport and metabolism].	9.14042e-31
NZ_CP029189.1|WP_150258062.1|3474063_3475056_+|phosphate-ABC-transporter-permease-subunit-PstC	gnl|CDD|273992	TIGR02138, phosphate_transport_system_permease_protein_PstC, phosphate ABC transporter, permease protein PstC. The typical operon for the high affinity inorganic phosphate ABC transporter encodes an ATP-binding protein, a phosphate-binding protein, and two permease proteins. This family consists of one of the two permease proteins, PstC, which is homologous to PstA (TIGR00974). In the model bacterium Escherichia coli, this transport system is induced when the concentration of extrallular inorganic phosphate is low. A constitutive, lower affinity transporter operates otherwise. [Transport and binding proteins, Anions].	1.51143e-83
NZ_CP029189.1|WP_030009310.1|3478909_3479224_+|metal-sensitive-transcriptional-regulator	gnl|CDD|376835	pfam02583, Trns_repr_metal, Metal-sensitive transcriptional repressor. This is a family of metal-sensitive repressors, involved in resistance to metal ions. Members of this family bind copper, nickel or cobalt ions via conserved cysteine and histidine residues. In the absence of metal ions, these proteins bind to promoter regions and repress transcription. When bound to metal ions they are unable to bind DNA, leading to transcriptional derepression.	2.18648e-30
NZ_CP029189.1|WP_150258059.1|3467943_3468870_+|mycothiol-synthase	gnl|CDD|132489	TIGR03448, mycothiol_MshD, mycothiol synthase. Members of this family are MshD, the acetyltransferase that catalyzes the final step of mycothiol biosynthesis in various members of the Actinomyctes, Mycothiol replaces glutathione in these species. [Biosynthesis of cofactors, prosthetic groups, and carriers, Glutathione and analogs].	7.78976e-123
NZ_CP029189.1|WP_150261939.1|3458677_3459721_-|MerR-family-transcriptional-regulator	gnl|CDD|133382	cd01107, HTH_BmrR, Helix-Turn-Helix DNA binding domain of the BmrR transcription regulator. Helix-turn-helix (HTH) multidrug-efflux transporter transcription regulator, BmrR and YdfL of Bacillus subtilis, and related proteins; N-terminal domain. Bmr is a membrane protein which causes the efflux of a variety of toxic substances and antibiotics. BmrR is comprised of two distinct domains that harbor a regulatory (effector-binding) site and an active (DNA-binding) site. The conserved N-terminal domain contains a winged HTH motif that mediates DNA binding, while the C-terminal domain binds coactivating, toxic compounds. BmrR shares the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements.	9.12495e-30
NZ_CP029189.1|WP_150261941.1|3469452_3471612_+|RNA-degradosome-polyphosphate-kinase	gnl|CDD|235469	PRK05443, PRK05443, polyphosphate kinase; Provisional.	0
NZ_CP029189.1|WP_150258057.1|3465073_3465856_+|alpha/beta-fold-hydrolase	gnl|CDD|223669	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only].	2.39903e-25
NZ_CP029189.1|WP_150258061.1|3472796_3473933_+|phosphate-ABC-transporter-substrate-binding-protein-PstS	gnl|CDD|273374	TIGR00975, precursor_PBP-3_PstS-3_Antigen_Ag88., phosphate ABC transporter, phosphate-binding protein. This family represents one type of (periplasmic, in Gram-negative bacteria) phosphate-binding protein found in phosphate ABC (ATP-binding cassette) transporters. This protein is accompanied, generally in the same operon, by an ATP binding protein and (usually) two permease proteins. [Transport and binding proteins, Anions].	3.20913e-73
NZ_CP029189.1|WP_150258064.1|3476166_3476943_+|phosphate-ABC-transporter-ATP-binding-protein	gnl|CDD|184587	PRK14241, PRK14241, phosphate transporter ATP-binding protein; Provisional.	0
NZ_CP029189.1|WP_150258060.1|3471592_3472549_+|CHAD-domain-containing-protein	gnl|CDD|214880	smart00880, CHAD, The CHAD domain is an alpha-helical domain functionally associated with some members of the adenylate cyclase family. It has conserved histidines that may chelate metals.	4.65736e-06
NZ_CP029189.1|WP_150258058.1|3465956_3467774_-|bifunctional-metallophosphatase/5'-nucleotidase	gnl|CDD|277357	cd07412, MPP_YhcR_N, Bacillus subtilis YhcR endonuclease and related proteins, N-terminal metallophosphatase domain. YhcR is a Bacillus subtilis sugar-nonspecific endonuclease. It cleaves endonucleolytically to yield nucleotide 3'-monophosphate products, similar to Staphylococcus aureus micrococcal nuclease. YhcR appears to be located in the cell wall, and is thought to be a substrate for a Bacillus subtilis sortase. YhcR is the major calcium-activated nuclease of B. subtilis. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.	2.35739e-119
NZ_CP029189.1|WP_150258065.1|3477078_3478077_-|inorganic-phosphate-transporter	gnl|CDD|376541	pfam01384, PHO4, Phosphate transporter family. This family includes PHO-4 from Neurospora crassa which is a is a Na(+)-phosphate symporter. This family also contains the leukaemia virus receptor.	9.85655e-101
NZ_CP029189.1|WP_150258056.1|3464382_3464952_-|TetR-family-transcriptional-regulator	gnl|CDD|366102	pfam00440, TetR_N, Bacterial regulatory proteins, tetR family.	1.82667e-10
NZ_CP029189.1|WP_150258053.1|3459880_3461107_+|trypsin-like-serine-protease	gnl|CDD|273938	TIGR02037, Probable_periplasmic_serine_protease_do/HhoA-like, periplasmic serine protease, Do/DeqQ family. This family consists of a set proteins various designated DegP, heat shock protein HtrA, and protease DO. The ortholog in Pseudomonas aeruginosa is designated MucD and is found in an operon that controls mucoid phenotype. This family also includes the DegQ (HhoA) paralog in E. coli which can rescue a DegP mutant, but not the smaller DegS paralog, which cannot. Members of this family are located in the periplasm and have separable functions as both protease and chaperone. Members have a trypsin domain and two copies of a PDZ domain. This protein protects bacteria from thermal and other stresses and may be important for the survival of bacterial pathogens.// The chaperone function is dominant at low temperatures, whereas the proteolytic activity is turned on at elevated temperatures. [Protein fate, Protein folding and stabilization, Protein fate, Degradation of proteins, peptides, and glycopeptides].	2.62474e-59
NZ_CP029189.1|WP_150258055.1|3461910_3463353_+|HAMP-domain-containing-protein	gnl|CDD|223715	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms].	6.65055e-50
NZ_CP029189.1|WP_150258054.1|3461182_3461914_+|response-regulator	gnl|CDD|223816	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription].	5.51502e-93
NZ_CP029189.1|WP_150261940.1|3463332_3464199_-|phosphatidylinositol-specific-phospholipase-C-domain-containing-protein	gnl|CDD|176528	cd08586, PI-PLCc_BcPLC_like, Catalytic domain of Bacillus cereus phosphatidylinositol-specific phospholipases C and similar proteins. This subfamily corresponds to the catalytic domain present in Bacillus cereus phosphatidylinositol-specific phospholipase C (PI-PLC, EC 4.6.1.13) and its sequence homologs found in bacteria and eukaryota. Bacterial PI-PLCs participate in Ca2+-independent PI metabolism, hydrolyzing the membrane lipid phosphatidylinositol (PI) to produce phosphorylated myo-inositol and diacylglycerol (DAG). Although their precise physiological function remains unclear, bacterial PI-PLCs may function as virulence factors in some pathogenic bacteria. Bacterial PI-PLCs contain a single TIM-barrel type catalytic domain. Their catalytic mechanism is based on general base and acid catalysis utilizing two well conserved histidines, and consists of two steps, a phosphotransfer and a phosphodiesterase reaction. This family also includes some uncharacterized eukaryotic homologs, which contains a single TIM-barrel type catalytic domain, X domain. They are similar to bacterial PI-PLCs, and distinct from typical eukaryotic PI-PLCs, which have a multidomain organization that consists of a PLC catalytic core domain, and various regulatory domains, and strictly require Ca2+ for their catalytic activities. The prototype of this family is Bacillus cereus PI-PLC, which has a moderate thermal stability and is active as a monomer.	5.72116e-89
NZ_CP029189.1|WP_150258052.1|3457647_3458670_+|LacI-family-DNA-binding-transcriptional-regulator	gnl|CDD|224525	COG1609, PurR, Transcriptional regulators [Transcription].	1.64705e-98
NZ_CP029189.1|WP_150258063.1|3475055_3476138_+|phosphate-ABC-transporter-permease-PstA	gnl|CDD|223654	COG0581, PstA, ABC-type phosphate transport system, permease component [Inorganic ion transport and metabolism].	2.06002e-87

Protein sequences

>NZ_CP029189.1|WP_150258059.1|3467943_3468870_+|mycothiol-synthase
MTDAAAALEPGRQIQTLDELTEEQAIAVLDLIEDAARTDGTTAVSEQGRLQLRGGPREGIRHFLLTENGRLSAYGQLEDTDPVEAPAAELVVHPALRGRGHGRAMGTALLAASGKRLRVWAHGGKSAARHLAQVLGLTLFRELRQLRRPLADGDPLPEPVLPPGVTVRTFVPGVDDTAWLTANAAAFAHHPEQGSLTQRDLDDRIAQPWFDPKGFFLAERDGELVGFHWTKVHAAEQLGEVYVVGVRPGAQGGGLGKALTAIGLRHLAAQGLPTAMLYVDADNPAALAVYAGLGFTTHEVDLMYRTES
>NZ_CP029189.1|WP_150258058.1|3465956_3467774_-|bifunctional-metallophosphatase/5'-nucleotidase
MSATPQRHLRTRRLTLTALAVTAGAGAMVAAALPAGAASGGGAAKSRTVDVQMLSFNDFHGTLEPPQGSSGTVTERQADGTTKAIPAGGVEYLATSLREARKGHEYSVTAAAGDMIGGSPMLSGLFHDEPSIEALNKIGLDVSSVGNHEFDEGKTELRRMGYGGCHPVEGCFEYGKEFTGAEFQYLAANVTDEKTKRPLMSPTYIWKKGDVKIGFIGVTLEGTPDVVTAEGVKGLKFGDEIETINKYAAELNKQGVKSIVALIHEGGLPANGAYNYDCDVPGAGAGISGAIVDIAKNVDAKVDALVTGHTHQAYACNIPDPAGNPRTVTSAASIGRLFTDTTLTYDRQTKDIVRTPVTSPKPVNKIVGREQPKAPDMTELIDRWKALAAPIANRPQGFISADIPGRGSEAPEKPLGDLIADAQLEALAPADKGGAQLAIMNPGGIRSDLAYKASGDEGDGVVTYGESFTVQPFTNMMNIVDLTGAQLITALQQQVSGPVNGPNPKILQVSKGFTYTLDMTKAGVDRIVVDSVKLNGVPLDPAKTYRVAMNEFLAGGGDGFTVLKEHKNKLVGASDLDCFNAYLTKNSSAAAPIAPPAANRITVVK
>NZ_CP029189.1|WP_150258057.1|3465073_3465856_+|alpha/beta-fold-hydrolase
MRHELKIDDRTLSYLDFGGPGRPLLALHGGMSEALAFTGLAEALGDSRRVIAPDQRGHGDSDRAPDYHREGYVSDAVALLDHLGLDAPVDLLGYSLGGLNAYHLAAAHPDRISALVGVDATVEIRIPDGPNWFDFLGGLPYTAPTREELLAAAGPAAPFVADGLRPLPDGTGWRLAHHPQDMLDSIHACAGDHWDTWLASTCPALLIHGTRSQALRQPVADAMTARRPKTSYTPLDGDHFVPFTDPDGFHTAVRTFLASL
>NZ_CP029189.1|WP_150258056.1|3464382_3464952_-|TetR-family-transcriptional-regulator
MGNREDLLAGARRCLEEKGYLRTTVRDVATAADVSMAAIGYHFGSREALLNQALFAAMEEWAAGSGRLTGQGETAGERYADTWDRKIRDFGETRWLWLASVEAFVHAQSSPELLAILAEGQRRNRRMVAAALRGVPEAEVSEADVRALGSMHIALLSGVMVQTLTDPEQAPDGGELLRGLREMVGLLED
>NZ_CP029189.1|WP_150261940.1|3463332_3464199_-|phosphatidylinositol-specific-phospholipase-C-domain-containing-protein
MGRRAFLAGALAAGAVAGLAAASAPAAAAALGTQDWMAGLGDSTALQRMTIPGTHDSGATKGGLYVACQNTSIAQQLDSGIRFLDVRCRVTGGSFAIHHAAFFQDLMFGDVLVACWNFLAAHPSETVLMRVKQEYSGESDATFRAVFDDYLDHRGWRPLFRIADTLPSLGQARGKVVLLADNGGLPGLRYGDGNVFDIQDDYNTEPFAKRGRIENHFRKAVAQPGKLFVNYVSTAAYMPPRWNSDRLNPQVHGFVDGGEMSGRTGLGIVPMDFPNTRSGLVASLIRHN
>NZ_CP029189.1|WP_150258055.1|3461910_3463353_+|HAMP-domain-containing-protein
MSPTARFRALPLRSRLALLVTVAVALAVATVSGVSWVMVRAELGNQLNQSLMSTNPTTQVLDRLSQGCPPRPAAQVQQDIAEKLNATVQIVTADGSHCWVSGQTDLPVTAADKEVAAGRKPKVLHDATTDNGVAMRVYTFAAQTRPGGPIFAVSVARPLADVDKPLSTLAWVLLLVSALGIAGAGAAGLWVARTGLQPVDELTDAVEHIARTEDLTVRIPDEGDDEIARLSRSFNSMTAALASSQERQAQLIADAGHELRTPLTSLRTNIELLARSEETGRAIPPDDRRELLASVKAQMTELASLIGDLQELSRPDAASPGPLGVVALHEIAGTALSRVRLRGPELRFDSDLGPWYVRGEAAALERAVVNVLDNAVKFSPPGGTVSVTLRAGELTVRDHGPGIPAEDLPYVFERFWRSESARALPGSGLGLSIVARTAARSGGSAELRAAADGGPGTEAVLRIPGAPTPPPSDPSVVPDQ
>NZ_CP029189.1|WP_150258054.1|3461182_3461914_+|response-regulator
MNPAEGEARILVVDDEPAVREALRRSLAFEGYAVQTAVDGLDALDKAASYSPDLIVLDIQMPRMDGLTAARRLRASGSVTPILMLTARDTVGDRVTGLDAGADDYLVKPFELDELFARVRALLRRSSYAAPQSPGESHEEALTFGDLRMDLVTREVTRAGRPVELTRTEFTLLEMFLAHPRQVLTREQILKTVWGFDFEPSSNSLDVYVMYLRRKTEAGGEPRLVHTVRGVGYALRAGESGPE
>NZ_CP029189.1|WP_150258053.1|3459880_3461107_+|trypsin-like-serine-protease
MTDSFRREGEYPQENSPAQHAPFGAYPAAGAGAAAYPPPPSYPPAAPGWHEAHQPQPQVIRGETVPAGEGGAGGNGGYEGGGPHGPAHAAAPAPAPRAKRPVALLAAVALAAALVGGGTAAAVGQLMDRQAGSTGGVDGTTVSQSSSGTVAGVAEQVSPSVVRIDVRTGSGQGTGSGIVLTADGEIVTNNHVVSGAAEIQVTMSDGKKYAAKTVGTDPDKDLALIKLQGASGLKPAVLGGSGGVKVGDQVVAIGSPDGLTGTVTSGIVSALNREVKVPKSEQQAPRSRQQGEDGWPFSFGGRQFNGDTGSDTTSYKALQTDASLNPGNSGGALVDMNGRIVGMPSAIYSPASGNSAAGSVGLGFAIPVDTIKADLDSLRKGGPGGTGSSDTGPGSGSGSAANGFGTSF
>NZ_CP029189.1|WP_150261939.1|3458677_3459721_-|MerR-family-transcriptional-regulator
MGRDSGLGVSALRFYDRAGVLPPARVDPATGYRWYAPEQLDEARLLARLRQAGMPLADVRLVLAAWSGGDTGLVPLLLDGHLRRLERELADARGALSAVRARLGHKESTMPTTALTARLTVPAAELAAALDSVRFAAGTDPELPVLGGILFDAEGTDLHVVATDRYRMAVARTSTTGHGGERVRLTVPTPLVDAMRALLAGDSPALLTVDGDGIELETQGRRVAGQGLGEEFPDYRRLTRLPEGRRIPLDVPALRQGLAGQEGERCALVLTDTVTVADEAHEPGSGPGSGSGSAGELVGVNPAFLLDALAVGDDMTLEYVGPRAPLVLRRPGTEDAFSLLMPCTLDA
>NZ_CP029189.1|WP_150258052.1|3457647_3458670_+|LacI-family-DNA-binding-transcriptional-regulator
MAKVTRDDVARLAGTSTAVVSYVINNGPRPVAPATRERVLAAIKELGYRPDRVAQAMASRRTDLIGMIVPDARQPFFAEMAHAVEQAAAERGKMVLVGNSDYRTEREVHYLRAFLGMRVSGLILVSQGMSEQAASEIEAWDARVVLLHERPEAIDDVAVVTDDIGGAQLATRHLLEHGHEYVACIGGVENTPSVGDPVADHVEGWRRAMQESGRSIEGRLIEAPYNRYDAYRVALEVLARPDRPTAIFCATDDQAIGVLRAARELRIDVPGELAVAGFDDVKEAALTDPPLTTIASDRPAMARAAVDLVLDDGLRVAGSRRERLKQFPSALVVRRSCGCH
>NZ_CP029189.1|WP_150261941.1|3469452_3471612_+|RNA-degradosome-polyphosphate-kinase
MGSISAHRPHVDLEPDLDADLDAYDDKDGDELPPGRFLDRERSWLAFNERVLELAEDPTTPLLERANFLAIFASNLDEFFMVRVAGLKRRIATGVATRSASGLQPREVLDLIWTRSRELMARHAACFQQDISPALAEEGVHLIRWPDLTEKEQARLFTLFRNQIFPVLTPLAVDPAHPFPYISGLSLNLAVVVRNPVSGHRHFARVKVPPLLSRFLEASPQRYVPLEDVIAAHLEELFPGMEVLAHHMFRVTRNEDLEVEEDDAENLLQALEKELMRRRFGPPVRLEVEESIDPGVLDLLVQELKVNASEVYPLPGPLDLTALFGIASLDIPELKYPKFVAGTHRDLAEVESASAPDIFAALRERDVLLHHPYDSFSTSVQAFLEQAAADPDVLAIKQTLYRTSGDSPIVDALIDAADSGKQVLVLVEIKARFDEQANIKWARKLEESGCHVVYGLVGLKTHCKLSLVVRQEGDTLRRYSHVGTGNYHPKTARLYEDLGLLTADPQVGADLSDLFNRLSGYSRRETYRRLMVAPRSLRDGLIARIDKEAAHHKAGRPAYVRLKMNSIVDEALIDSLYRASQAGVPVDIWVRGICAVRPGVPGLSDNIRVRSILGRFLEHSRVFAFGNGGEPEVWIGSADMMHRNLDRRIEALVRVADPAHRAALDRMLETGMSDATSSWHLGPDGEWTRHSTDADGQPLRHVQETLIDARRRRRGSAKP
>NZ_CP029189.1|WP_150258060.1|3471592_3472549_+|CHAD-domain-containing-protein
MAQPNHDPITATADAGAVLGTYLRAQATAFLRGLRLHEESGADAAEGSDAARSLRGAARRISGSLATFRVVTESSWADGLRTELVWLSSTLADEHAYAARLTRLMDALHRLSGSPELPAPRGSAGALTVGSARAGALLERQLTLARTRAHSATLQALGSSRFHAVADAVAVLASEVPLDAVAARGRVSEVLVPLAAVAETRLSAAVTSLPPADGAQPYNADHDGPWHEVRRLLRVHRYAREALGEDVTRPAAAGQALDRHRDAAEAATASATAARTPRIAPATAYALGVLHADQRHEVEAARLEFRHLWLPEPVVTPR
>NZ_CP029189.1|WP_150258061.1|3472796_3473933_+|phosphate-ABC-transporter-substrate-binding-protein-PstS
MKLQRKNMLRASALGALVVSGALVLTACGSDDNTKTADGSAKPSAAAAGDIKCDDAKGKLLASGSSAQKNAIELWIKNYMAACSGVEVNYKSSSSGEGIVAFNQGTVGFAGSDSALKPEQVEESKKICTGGQGIDLPMVGGPVALGFNVAGVDKLNLDAATIANIFNDKIKKWDDEAIKKLNPGVTLPSTAIQAFHRSDDSGTTENVTKYLKAAAPDAWPHEPAKKWAAPGGQAASGSAGVAAQVKQVDGAIGYFELSFASAQGIKTVDLNTGAAAPVPATGENASKAIAAAKIAGTGSDLALKLDYTTKAEGAYPLVLVTYEVVCDKGNKAETLPTVKSFLNYAASDAGQKVLLENGYAPIPAEINTKVREVINTLG
>NZ_CP029189.1|WP_150258062.1|3474063_3475056_+|phosphate-ABC-transporter-permease-subunit-PstC
MASTTPTQIDTAPPVTRSGGSSTGRAGDKIFAGLSKGSGILLLVIMASIAVFLTYRASIALSKNEGNFLTTFDWNASANPPVFGIAVLLFGTVVSSIIAMAIAVPIAVGIALFISHYAPRKLAAPLAYVVDLLAAVPSIIYGIWGALFLVPQLNGLNLWLDEYLGWTYVFDKTQVGVARSLFTVGILLAIMILPIVTSVSREVFLQVPRMNEEAALALGATRWEVIRMSVLPFGRSGVISASMLGLGRALGETMAVATVLSPSFLISGHLLNPGGGTFAQNIAAKFDEANEFGRDALIASGLVLFLLTLLVNGAARLIIARRKDFSGANA
>NZ_CP029189.1|WP_150258063.1|3475055_3476138_+|phosphate-ABC-transporter-permease-PstA
MSHAIQDQQPTRARRSAAPAGLTRGGLPRWAPAGIAALSIALGCGIGLAFGLQSKVQWGLLAALLFIGITYAASAVIENRRQAKDRVATSLVWVCFVLAVIPLLSLMWTTVSRGLELLSGNFLSHSMNGVTSFDEGGGVYHALLGTIEQVALATLIAAPIGLLTAVYLVEYGKGRLAKSVTFFVDVMTGIPSIVAGLFILTTWNLMLGFGPSGFAGAMALSILMMPVVVRSTEEMLKLVPNELREAALALGVPKWRVILKVVLPTAIGGISTGVMLAVARIAGETAPIMLLVFGTQLINGNPFEGAQSSLPLYIWEQYKVGSEPSYDRAWAAALVLIAFVMILNLVARGIARWKAPKTGR
>NZ_CP029189.1|WP_150258064.1|3476166_3476943_+|phosphate-ABC-transporter-ATP-binding-protein
MAKRIDVSGLSAFYGTHKAIDDISMTVEPRSVTAFIGPSGCGKSTFLRTLNRMHEVTPGGRVEGKVLLDDENLYGSGVDPVAVRRTVGMVFQRPNPFPTMSIFDNVAAGLRLNGSFKKSELTDIVEKSLQGANLWNEVKDRLNKPGSGLSGGQQQRLCIARAIAVEPEVLLMDEPCSALDPISTLAIEDLIGELKERFTIVIVTHNMQQAARVSDRTAFFNLAAVGQPGKLIELDDTDRIFSNPSVQATEDYISGRFG
>NZ_CP029189.1|WP_150258065.1|3477078_3478077_-|inorganic-phosphate-transporter
MDTFALVVTIGVALGFTYTNGFHDSANAIATSVSTRALTPRAALAMAAVMNLAGAFLGSGVAKTVSQGLIETPTGSTGMWILFAALVGAIVWNLITWYFGLPSSSSHALFGGMVGAALAGGTEVIWSGVLDKVVIPMFVSPVVGLVAGYLVMVAILWMFRRSNPHKAKHGFRIAQTVSAAAMALGHGLQDAQKTMGIVVMALVIADVQSADAPIPVWVKVVCAVMLSLGTYAGGWRIMRTLGRKIIELDPPQGFAAETTGASIMFGSAYLFHAPISTTHVITSAIMGVGATKRVNAVRWGVAKNIILGWFITMPAAAVVAALCFWLVDLAFV
>NZ_CP029189.1|WP_008742369.1|3478082_3478703_-|DUF47-domain-containing-protein
MRFRLTPRETSFYDMFAASADNIVTGSKLLMELLGADSSARAEIAERMRAAEHAGDDATHAIFHQLNSSFITPFDREDIYNLASSLDDIMDFMEEAVDLVVLYNVEELPKGVEQQIEVLARAAELTAEAMPHLRTMDNLTEYWIEVNRLENQADQIHRKLLAQLFNGKYDAIEVLKLKQIVDVLEEAADAFEHVANTVETIAVKES
>NZ_CP029189.1|WP_030009310.1|3478909_3479224_+|metal-sensitive-transcriptional-regulator
MTTIEAEGSGAVHGYHHQKDEHLKRLRRIEGQIRGLQRLVDEDVYCIDILTQVSASTKALQSFALQLLEEHLRHCVADAAVKGGTEIDAKVEEATKAIARLLRT
>NZ_CP029189.1|WP_150258066.1|3479744_3480575_-|hypothetical-protein
MVDHQHRRPRGRAGEAVLAAGVTLAVTTMTGCAGDTGDARPPADAAAVVRGAADALTRTGSARARTAMEMATGGTRVTIRGEGGVDFRKRMGQLVVMLPADVKGKAEHRPITELLVSGALYMKNRGAGVPDDKWVRVDTTTLNDGNLVTGGATDPLVAAELLRGAAEVTYVGETEVAGTKVRHYRGTTDLGRAAGSASPEVRGALAAAAKGFSTDAVPFDAYLDEEGRLRKVRHRFTYVNNGVIDVSSTTLLYGFGTPVTVVLPASGDIYAGKIAD

Crispr_ID: NZ_CP029189_14

• CRISPR_ID: NZ_CP029189_14
• CRISPR_location: 3731142-3731274
• CRISPR_type: Orphan
• Repeat_type: NA
• Spacer_info: 2 spacers

Consensus repeat of NZ_CP029189_14

Consensus_repeat	Method
CCGCCGCCCTGCTGCTGGCCACCGG	CRISPRCasFinder

spacers of NZ_CP029189_14

>14.1|3731167|38|NZ_CP029189|CRISPRCasFinder
CCGGCGCGCTGGACGCCCACGGGTCGTCGGAGGGAGCT
>14.2|3731230|20|NZ_CP029189|CRISPRCasFinder
GGGCTCCGCCCCAGTTGCCA

CRISPR arrays and Neighbor proteins around NZ_CP029189_14

CRISPR arrays

The CRISPR arrays of NZ_CP029189_14

>merge|NZ_CP029189|14|3731142-3731274|CRISPRCasFinder
CCGCCGCCCTGCTGCTGGCCACCGGCCGGCGCGCTGGACGCCCACGGGTCGTCGGAGGGAGCTCCGCCGCCCTGCTGCTGGCCACCGGGGGCTCCGCCCCAGTTGCCACCGCCGCCGCCCTGCTGCTGACCGC

>NZ_CP029189|14|13|3731142-3731274|CRISPRCasFinder
CCGCCGCCCTGCTGCTGGCCACCGG	CCGGCGCGCTGGACGCCCACGGGTCGTCGGAGGGAGCT
CCGCCGCCCTGCTGCTGGCCACCGG	GGGCTCCGCCCCAGTTGCCA
CCGCCGCCGCCCTGCTGCTGACCGC

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP029189.1|WP_150258238.1|3736526_3739136_-|penicillin-binding-protein	unknown	unknown	gnl|CDD|223815
NZ_CP029189.1|WP_150258230.1|3723835_3724297_+|GNAT-family-N-acetyltransferase	unknown	unknown	gnl|CDD|366181
NZ_CP029189.1|WP_150258241.1|3742588_3744055_-|CCA-tRNA-nucleotidyltransferase	unknown	unknown	gnl|CDD|131739
NZ_CP029189.1|WP_150261963.1|3726933_3728400_-|replicative-DNA-helicase	unknown	unknown	gnl|CDD|273206
NZ_CP029189.1|WP_030008386.1|3730329_3730776_-|50S-ribosomal-protein-L9	unknown	unknown	gnl|CDD|234659
NZ_CP029189.1|WP_150258240.1|3741251_3742520_+|MFS-transporter	unknown	unknown	gnl|CDD|340863
NZ_CP029189.1|WP_150258231.1|3724354_3725524_+|winged-helix-DNA-binding-domain-containing-protein	unknown	unknown	gnl|CDD|377630
NZ_CP029189.1|WP_005315025.1|3730794_3731031_-|30S-ribosomal-protein-S18	unknown	unknown	gnl|CDD|178997
NZ_CP029189.1|WP_150258227.1|3720791_3722000_-|flavohemoprotein	unknown	unknown	gnl|CDD|99784
NZ_CP029189.1|WP_150258235.1|3732735_3733854_+|peptidoglycan-bridge-formation-glycyltransferase-FemA/FemB-family-protein	unknown	unknown	gnl|CDD|225224
NZ_CP029189.1|WP_150258229.1|3722927_3723821_+|GNAT-family-N-acetyltransferase	unknown	unknown	gnl|CDD|380091
NZ_CP029189.1|WP_150258228.1|3722121_3722772_-|HAD-IB-family-phosphatase	unknown	unknown	gnl|CDD|223634
NZ_CP029189.1|WP_030008388.1|3732281_3732584_+|hypothetical-protein	unknown	unknown	unknown
NZ_CP029189.1|WP_150258237.1|3734972_3736433_-|DUF2029-domain-containing-protein	unknown	unknown	gnl|CDD|227937
NZ_CP029189.1|WP_150258233.1|3728852_3730193_+|MATE-family-efflux-transporter	unknown	unknown	gnl|CDD|240541
NZ_CP029189.1|WP_004950685.1|3731740_3732031_-|30S-ribosomal-protein-S6	unknown	unknown	gnl|CDD|179034
NZ_CP029189.1|WP_150258236.1|3733930_3734962_+|alanine-racemase	unknown	unknown	gnl|CDD|376473
NZ_CP029189.1|WP_150258232.1|3725538_3726924_-|serine-hydrolase	unknown	unknown	gnl|CDD|365903
NZ_CP029189.1|WP_150258239.1|3740063_3741146_+|inositol-3-phosphate-synthase	unknown	unknown	gnl|CDD|132491
NZ_CP029189.1|WP_030008393.1|3739411_3740014_+|PadR-family-transcriptional-regulator	unknown	unknown	gnl|CDD|224609

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NZ_CP029189.1|WP_150258238.1|3736526_3739136_-|penicillin-binding-protein	gnl|CDD|223815	COG0744, MrcB, Membrane carboxypeptidase (penicillin-binding protein) [Cell envelope biogenesis, outer membrane].	1.27458e-130
NZ_CP029189.1|WP_150258230.1|3723835_3724297_+|GNAT-family-N-acetyltransferase	gnl|CDD|366181	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family. This family contains proteins with N-acetyltransferase functions such as Elp3-related proteins.	1.3891e-17
NZ_CP029189.1|WP_150258241.1|3742588_3744055_-|CCA-tRNA-nucleotidyltransferase	gnl|CDD|131739	TIGR02692, putative_tRNA_nucleotidyltransferase, tRNA adenylyltransferase. The enzyme tRNA adenylyltransferase, also called tRNA-nucleotidyltransferase and CCA-adding enzyme, can add or repair the required CCA triplet at the 3'-end of tRNA molecules. Genes encoding tRNA include the CCA tail in some but not all bacteria, and this enzyme may be required for viability. Members of this family represent a distinct clade within the larger family pfam01743 (tRNA nucleotidyltransferase/poly(A) polymerase family protein). The example from Streptomyces coelicolor was shown to act as a CCA-adding enzyme and not as a poly(A) polymerase. [Protein synthesis, tRNA and rRNA base modification].	0
NZ_CP029189.1|WP_150261963.1|3726933_3728400_-|replicative-DNA-helicase	gnl|CDD|273206	TIGR00665, DnaB, replicative DNA helicase. This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of > 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites. [DNA metabolism, DNA replication, recombination, and repair].	0
NZ_CP029189.1|WP_030008386.1|3730329_3730776_-|50S-ribosomal-protein-L9	gnl|CDD|234659	PRK00137, rplI, 50S ribosomal protein L9; Reviewed.	3.61584e-64
NZ_CP029189.1|WP_150258240.1|3741251_3742520_+|MFS-transporter	gnl|CDD|340863	cd06173, MFS_MefA_like, Macrolide efflux protein A and similar proteins of the Major Facilitator Superfamily of transporters. This family is composed of Streptococcus pyogenes macrolide efflux protein A (MefA) and similar transporters, many of which remain uncharacterized. Some members may be multidrug resistance (MDR) transporters, which are drug/H+ antiporters (DHAs) that mediate the efflux of a variety of drugs and toxic compounds, conferring resistance to these compounds. MefA confers resistance to 14-membered macrolides including erythromycin and to 15-membered macrolides. It functions as an efflux pump to regulate intracellular macrolide levels. The MefA-like family belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	3.70101e-43
NZ_CP029189.1|WP_150258231.1|3724354_3725524_+|winged-helix-DNA-binding-domain-containing-protein	gnl|CDD|377630	pfam06224, HTH_42, Winged helix DNA-binding domain. This family contains two copies of a winged helix domain.	8.89185e-40
NZ_CP029189.1|WP_005315025.1|3730794_3731031_-|30S-ribosomal-protein-S18	gnl|CDD|178997	PRK00391, rpsR, 30S ribosomal protein S18; Reviewed.	5.36969e-37
NZ_CP029189.1|WP_150258227.1|3720791_3722000_-|flavohemoprotein	gnl|CDD|99784	cd06187, O2ase_reductase_like, The oxygenase reductase FAD/NADH binding domain acts as part of the multi-component bacterial oxygenases which oxidize hydrocarbons using oxygen as the oxidant. Electron transfer is from NADH via FAD (in the oxygenase reductase) and an [2FE-2S] ferredoxin center (fused to the FAD/NADH domain and/or discrete) to the oxygenase. Dioxygenases add both atoms of oxygen to the substrate, while mono-oxygenases (aka mixed oxygenases) add one atom to the substrate and one atom to water. In dioxygenases, Class I enzymes are 2 component, containing a reductase with Rieske type [2Fe-2S] redox centers and an oxygenase. Class II are 3 component, having discrete flavin and ferredoxin proteins and an oxygenase. Class III have 2 [2Fe-2S] centers, one fused to the flavin domain and the other separate.	5.70503e-89
NZ_CP029189.1|WP_150258235.1|3732735_3733854_+|peptidoglycan-bridge-formation-glycyltransferase-FemA/FemB-family-protein	gnl|CDD|225224	COG2348, COG2348, Peptidoglycan interpeptide bridge formation enzyme [Cell wall/membrane/envelope biogenesis].	7.80846e-40
NZ_CP029189.1|WP_150258229.1|3722927_3723821_+|GNAT-family-N-acetyltransferase	gnl|CDD|380091	pfam18014, Acetyltransf_18, Acetyltransferase (GNAT) domain. This entry represents a likely acetyltransferase enzyme that is related to pfam06852.	2.41426e-21
NZ_CP029189.1|WP_150258228.1|3722121_3722772_-|HAD-IB-family-phosphatase	gnl|CDD|223634	COG0560, SerB, Phosphoserine phosphatase [Amino acid transport and metabolism].	7.75436e-24
NZ_CP029189.1|WP_150258236.1|3733930_3734962_+|alanine-racemase	gnl|CDD|376473	pfam01168, Ala_racemase_N, Alanine racemase, N-terminal domain.	1.3186e-07
NZ_CP029189.1|WP_150258237.1|3734972_3736433_-|DUF2029-domain-containing-protein	gnl|CDD|227937	COG5650, COG5650, Predicted integral membrane protein [Function unknown].	4.12934e-33
NZ_CP029189.1|WP_150258233.1|3728852_3730193_+|MATE-family-efflux-transporter	gnl|CDD|240541	cd13136, MATE_DinF_like, DinF and similar proteins, a subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins. Escherichia coli DinF is a membrane protein that has been found to protect cells against oxidative stress and bile salts. The expression of DinF is regulated as part of the SOS system. It may act by detoxifying oxidizing molecules that have the potential to damage DNA. Some member of this family have been reported to enhance the virulence of plant pathogenic bacteria by enhancing their ability to grow in the presence of toxic compounds. Proteins from the MATE family are involved in exporting metabolites across the cell membrane and are often responsible for multidrug resistance (MDR).	2.65562e-112
NZ_CP029189.1|WP_004950685.1|3731740_3732031_-|30S-ribosomal-protein-S6	gnl|CDD|179034	PRK00453, rpsF, 30S ribosomal protein S6; Reviewed.	5.1546e-41
NZ_CP029189.1|WP_150258232.1|3725538_3726924_-|serine-hydrolase	gnl|CDD|365903	pfam00144, Beta-lactamase, Beta-lactamase. This family appears to be distantly related to pfam00905 and PF00768 D-alanyl-D-alanine carboxypeptidase.	7.15534e-59
NZ_CP029189.1|WP_150258239.1|3740063_3741146_+|inositol-3-phosphate-synthase	gnl|CDD|132491	TIGR03450, mycothiol_INO1, inositol 1-phosphate synthase, Actinobacterial type. This enzyme, inositol 1-phosphate synthase as found in Actinobacteria, produces an essential precursor for several different products, including mycothiol, which is a glutathione analog, and phosphatidylinositol, which is a phospholipid.	0
NZ_CP029189.1|WP_030008393.1|3739411_3740014_+|PadR-family-transcriptional-regulator	gnl|CDD|224609	COG1695, COG1695, Predicted transcriptional regulators [Transcription].	9.32718e-17

Protein sequences

>NZ_CP029189.1|WP_005315025.1|3730794_3731031_-|30S-ribosomal-protein-S18
MAKPPVRKPKKKVCAFCKDKTAYVDYKDTNMLRKFISDRGKIRARRVTGNCTQHQRDVATAVKNSREMALLPYTSTAR
>NZ_CP029189.1|WP_030008386.1|3730329_3730776_-|50S-ribosomal-protein-L9
MKIILTHEVSGLGAAGDVVDVKDGYARNYLVPRGFAIRWTKGGEKDVAQIRRARKIHEIATIEQANEVKAKLEGVKVRLATRAGDAGRLFGSVTPADIATAIESSGGPKVDKRRVELGSPIKTLGSYQVSVRLHADVAANVGIEVVAA
>NZ_CP029189.1|WP_150258233.1|3728852_3730193_+|MATE-family-efflux-transporter
MTQALAAPKAGPGRHDREIFTLALPAFGALVAEPLFVMADSAIVGHLGTPQLAGLGIAAAVLTTAVSVFVFLAYATTAAVARRVGAGDLQAAIRQGIDGIWLALLLGAAVVAVVLPATPSLVSLFGASDTVAPYAITYLRISALGIPAMLMVLAATGVIRGLQDTRTPLYVAIGGFALNAGLNVALVYGAELGIAGSAWGTVIAQCAMAAAYLFVVVRGARRHGASLRPDLAGIRACAQAGAPLLVRTLSLRAILMIATAVAARLGDADIAAHQILLSLWSLLAFALDALAIAGQAIIGRYLGAGDTDGAKAVCRRMVRWGIVSGVVLGLLVVLARPVFIPLFTSDPSVEAALLPALLVVALSQPVSGIVFVLDGVLMGAGDGRYLAQAMLVTLAAFAPAALLVPVLGGGLTALWWAMTLMMVVRMITLRLRAGSGRWLIAGATRP
>NZ_CP029189.1|WP_150261963.1|3726933_3728400_-|replicative-DNA-helicase
MDDPWADSGPGDRLPARPRRNSEGRGRGDEQHERGREGGSWDSGGGGGFERVPPQDLDAEQSVLGGMLLSKDAIADVVEVLKGHDFYRPSHETIYQAILDLYAKGEPADPITVGAELTRRGEISKVGGASYLHTLVQSVPTAANAEYYAEIVHERAVLRRLVAAGTKITQMGYAADGDVDEIVNSAQAEIYAVTEQRTSEDYLPLGDIMEGALDEIEAIGSRSGQMSGVPTGFTDLDSLTNGLHPGQMIVIAARPAMGKSTLALDFARACSIKSNLPSVIFSLEMGRNEIAMRLLSAEARVALHHMRSGTMTDDDWTRLARRMPDVSAAPLYIDDSPNLSMMEIRAKCRRLKQRNDLSLVVIDYLQLMQSGGSRRPESRQQEVSDMSRNLKLLAKELEVPVIALSQLNRGPEQRTDKKPMVSDLRESGSIEQDADMVILLHREDAYEKESPRAGEADLIVAKHRNGPTATITVAFQGHYSRFVDMANT
>NZ_CP029189.1|WP_150258232.1|3725538_3726924_-|serine-hydrolase
MDELAEDLELLPATRRALRHRIAVAQSEGRAPSVVAAVLRGGEVVWEGSRTSVEGHGPDGDVQYRIGSITKTFTAVLVMRLRDEGLISLADPLEKHLPGTGAGQVTIAQLLSHTGGLAAETPGEWWERTPGEQRPELGDVLGEEPFKLAPGTRHHYSNPGYTLLGSLVEAVRGRPWEEALTAEVLEPLGLERTSGEPQAPHAGGWAVHPWADVMMPEPLEDLGLMAAAGRLWSTTRDLARFADFLLRGDERVLSAESVREMRTAASPPEPGLAELGYGLGMQLTAVGGRKLAGHSGSLPGFVAGLWLSEADDVAAVVLANCTSGLPASTVAAELVGIVADAEPRFPRPWRPFLESDHVPLDLCGPWYWGTSAQVVRLTADGLLELGPAGGSGRTARFRAEPDGSWTGLFGYYAGETLRAVRRADGSVSHLDLASFVFTREPYDTDAPVPGGVDPQGWRGIG
>NZ_CP029189.1|WP_150258231.1|3724354_3725524_+|winged-helix-DNA-binding-domain-containing-protein
MSLPLVTTAERRHRLGRRHRLAPSARAATVTETADSVVALHATDAATVFLSARARLAAGGPEVIERALYEEVGLVRLLSMRNTLFAVSAELAPHVDASTARAIAVKERRSLLKHLDEDGQGLDAAWLARAETATLDALDVHGPSTGSQLSAAVPALRQKITISRGKKYETEQGIATRVIRVLAADGRIRRDRPRGSWTSSQYRWVHTDPWPAVPAADARTEIARRWLHAYGPATEADLKWWTGWTLTDVRKALAAVGPDQVRLEDGSTALVGPGDTGPEPAPEPWAALLPALDPSGMGWADRGFHLDPAHRSALFDYAGNIGPTVWWNGEIVGGWAQRSEGEIVWRLLGSPGPAAEQAITTEAARLAAWVGEARVTPRFRTPLERELVA
>NZ_CP029189.1|WP_150258230.1|3723835_3724297_+|GNAT-family-N-acetyltransferase
MTDTSELTIRPATEADVPAIVAMLADDPLGATRESPDDLAPYLAALKRLAEDPNQHLVVAVRGDRVVGTLQLTIVPGLSRKGATRSIIEGVRVHADERGGGLGTQFIEWAVETSRAENCTLVQLTSDATRTDAHRFYERLGFTASHVGFKLQL
>NZ_CP029189.1|WP_150258229.1|3722927_3723821_+|GNAT-family-N-acetyltransferase
MTPPHITDLPIRALTVDDLRRCADLSEDRGWLREEHKWRLLLAAGHGYGVDAPDGLGLAAACVVTRYGDTHAGPELAAIGMVLVADRYARQGLGRRLMTHVCDDVLKNVPLTLHATPYGRPLYEELGFETTGRTEMLRGAFRHEGTPGGYGSSRVRPATAEDLPRILRLDAEVFGADRTHMITRLPAFADRLVVAEGPSQGGPLTGYAAAWPNVDTQVIGPLIAHDTATAQSLVTALAAGTDRALRTDVDVRHEELLDWLKDRGLASVAFNSVMTRDIPGLPGDWTRRWAPLTVAAG
>NZ_CP029189.1|WP_150258228.1|3722121_3722772_-|HAD-IB-family-phosphatase
MALLHLFDLDGTLMYGSAAPAEISRQLGLSAEIAELERAFGAQEMGPHQFSVAAHALWAELTPAHVRAAFDGAPWLTGIRDVWQEIRDRGDYCAVISLSPSFFVELLLEWGAHAAHGSVFPEVPFTRPVEESGILTPEGKVRVADRLCAQFGVSRADCVAYGDSVTDAMLFEVVPVSVAVNARPYLAERATHVYEGRDLRDAYQLVGLTRPGVDAS
>NZ_CP029189.1|WP_150258227.1|3720791_3722000_-|flavohemoprotein
MLEARHRMDAPPTRSDRREAARISGQGGAIEPSPDAVLIRRTLAEIAPVADKVTSYFYALVFTGHPEVRDMFPAAMDVQRDRLLKALLTAAEHIDDPAVLVPYLRRLGAGHRKYGTMAGHYPAVGEALVGALARYAQYSWGPETQAAWVRAYTAISQIMIDAAAEEEAKAPAWWHAEVVSHDLRTPDIAVLTVRPDQPYAFLAGQYTSLETPWWPRVWRHYSFASAPRGDGLLSFHVKAVPAGWVSNALVRHARPGDVLRLGPPAGSMVVDHTTDNGMLCLGGGTGIAPIKALIEDVAEHGERRPVEVFFGARSDSDLYDKDTLLGLQRSHPWLSVRPVVGDGLAGQLPHAVGEHGPWSSYDAFVSGPPGMIRNGVDELLRIGIPCERIRYDAVEELAGVAG
>NZ_CP029189.1|WP_004950685.1|3731740_3732031_-|30S-ribosomal-protein-S6
MRHYEVMVILDPDLEERAVSPLIENFLSVVREGNGKVEKVDTWGRRRLAYEIKKKPEGIYSVIDLQAEPAVVKELDRQMNLNESVLRTKVLRPETH
>NZ_CP029189.1|WP_030008388.1|3732281_3732584_+|hypothetical-protein
MAQAMRPPQISLLSTDGKPHPLQDTLMAVTLTLGAVAFVTAFFHNLHLISSWAGLIGILTGAYGQFVSVTTRERFALIIGLGASAIGFYLGMFHGGLFGG
>NZ_CP029189.1|WP_150258235.1|3732735_3733854_+|peptidoglycan-bridge-formation-glycyltransferase-FemA/FemB-family-protein
MSLSLRTISREQHLGYLQSLPSASHCQVPAWADVKNEWRSENLGWFDESGELVGAALVLYRQLPKVKRYLAYLPEGPVINWYAPNLEEWLQPMLAHLKQQGAFTVKMGPPVVIRRWNSTAIKAGIQDPNVKRLRDVEASVIEPRAFEVSDKLRRMGWQQAEDGGAGFGDVQPRYVFQVPLANRSLDDVLKGFNQLWRRNIKKAEKAGVEVVQGGYDDLPTWQHLYEITAERDKFRPRPLSYFQRQWTALNSEDPNRMRLYIATHEGEPLAAATMLTVGQHVWYSYGASANHKREVRPSNAMQWRMLRDSYALGASVYDLRGISDTLDENDHLFGLIQFKVGTGGEAVEYVGEWDFPLNKMLHKALDIYMSRR
>NZ_CP029189.1|WP_150258236.1|3733930_3734962_+|alanine-racemase
MALTLYVDTARWRAHQKQIQDQFPGLIPVCKGNGYGFGHERLCEEATRMGADILAVGTTYEAASIKDWFGGDLLVLTPFRRGEDPVPLPDRVIRSVASLDGVRGLVGARVVIECMSSMRRHGISEQDLGQLHAAIEDVRLEGFALHLPLDRPDGSDAVEEVIGWMDRLRAARLPLHTMFVSHLRATELARLQQQFPQTRFRARIGTRLWLGDHEATEYRGAVLDVTRVAKGDRFGYRQQKAASDGWLVVVAGGTSHGVGLEAPKALHGVMPRAKGVARAGLATVNRNLSPFVWAGKQRWFAEPPHMQVSILFVPSDATEPKVGDELVAHLRHTTTQFDRVLDA
>NZ_CP029189.1|WP_150258237.1|3734972_3736433_-|DUF2029-domain-containing-protein
MTKVHEDSPVLPTQQDEVAAAGSELIGGPLGRYARLGGHWLGPVRVVALIAIGMFALGMVQKLPCYDWAWFRGAGSQYTHACYSDIPHLYAVRGFADNLTPYFDRLPGDMEYLEYPVLTGLFMEIASWLTPGSGSMQHREQMYWMVNAGMLMACAAVIAVCVARTHRRRPWDALLFALAPAFALTATINWDLLAIALTAAGMLMWSRGRTVLFGILIGLATAAKLYPVLLLGALFVLCWRAGKWRAFGGAVLGAAGAWLVVNLPVMLFAWDGWKKFYTFSQERPIDFGSVWLLISQRTGNSLEGANTYATGLTLLLCGAVGLLTLTAPRRPRFAQLAFLVVAAFILCNKVYSPQYVLWLIPLAALARPRWRDFLVWQAGEVVYFLGIWFYLAYTSSADKHQGLPVEGYQLAIIAHLLTTLYLCAVIVRDILMPERDVVRRDGSDDPSGGVLDGAEDVFVLSDAARAPQYATPSDGQRVAWGTSPQD
>NZ_CP029189.1|WP_150258238.1|3736526_3739136_-|penicillin-binding-protein
MSEHRRKPPQPEGGGRASARRAAQPRPGRGAAARDVPTASHSGPYAPEPGQGSRAETRAAQRGSGRGRGSGAATRGAGRPDKRLINYPRSDRDGWKRFVPSWKFVAGTALGFFAVITAGAGIGIAMVGTPDPNKAAQAQNNVFYWADGSQMVATGGSMNRQIVPISSIPRSMRDAVISAENESFETDKGVDPMGVARAVWNMATGGSTQGGSTITQQYVKNTYLDSDQTLKRKATELFIAIKLGVYEEKDKVLEGYLNTAYYGRDAYGIQAAARAYFGKDSQDLNPSECAFLAAVLKGPNLYNPDGGIGAAATPALNEKRARERWSWVLDREVEVGRMDKAARAKFTDADFPPRVESEQARGMTGQIGYLVDTAKAYVMKTKNITPDQMAMGGYRIKTTFQKPRVDALSKAVEDTRNGFIDEKGRPETDTFVQFGAASVDVKTGALVALYGGPGWDHKYFSNNANSSGVPVGSTWKPYVLAAAMEYGTQNSKGKGISADSKYQANDLTVINNREGKPLRDASGAPFKQKNESPTAFGYVTLNEAMEKSINVPFAQLVFDVGHDKVRAVAKSTGILEESVNPNNDASFALGTSTPSAIRMADSYATFAASGTHREPFSVTEVEKDGEKLSGFEAPKDQRAMDSAVADNITKVLENVVENGTGKKVKKLGRPAAGKTGTTDENKSAWFVGYTPELSTSVVLFRTDPNSPDKKLISMKGVGDIPSLHGGDIPAEIWTEYMGEALKGLPVKQFPEAEDIGVTADSAGAPSPTPSAVVPASPSPSTLPPSSPPPSPSPSKGGRPSCPPWRLGCDPDTTRGTTNGGANSGANTGSTSGNTSGVIGGPSGSPSPTQSGRPGRPGGITGGFDDSAPE
>NZ_CP029189.1|WP_030008393.1|3739411_3740014_+|PadR-family-transcriptional-regulator
MSRRSGILEFAVLGLLRESPMHGYELRKRLNTSLGVFRAFSYGTLYPCLKTLVANGWLIEEPGNAPEDALAASLAGRRAKIVYRLTAAGKEHFEELLSHTGPDTWEDESFAARFAFFGQTERDVRMRVLEGRRSRLEERLEKMRASIARTRERLDDYTLELQRHGMESVEREVRWLNELIESERAGRDRRRSGPSDETEK
>NZ_CP029189.1|WP_150258239.1|3740063_3741146_+|inositol-3-phosphate-synthase
MGSVRVAIVGVGNCAASLVQGVEYYKDADPASKVPGLMHVQFGDYHVRDIEFVAAFDVDAKKVGLDLSDAIGASENNTIKICDVPNAGVTVQRGHTYDGLGKYYRMTIEESAEAPVDVVQVLKDREVDVLICYLPVGSEDAAKFYAQCAIDAKVAFVNALPVFIAGTKEWADKFTEAGVPIVGDDIKSQVGATITHRVMAKLFEDRGVRLERTMQLNVGGNMDFKNMLERDRLESKKISKTQAVTSQIPDRELGEKNVHIGPSDYVAWLDDRKWAYVRLEGRAFGDVPLNLEYKLEVWDSPNSAGVIIDALRAAKIAKDRGIGGPILSASSYFMKSPPVQYFDDEALANVEKFIKGEVER
>NZ_CP029189.1|WP_150258240.1|3741251_3742520_+|MFS-transporter
MPVVRDLRVLLRLRDFRNLLTVRLLSQAADGVYQVALATYVVFSPEKQTSPAAIASAMAVLLLPYSAIGPFAGVLLDRWRRRQVFLYGNLLRAFLACVTGMLIVAQVPDWLFYASALSVTAVNRFVLSGLAASLPHVVGPDQLVTANALSPTAGTLAAVAGGGLAFLVRLLASDSNALVVLLGAGLYLSAALVSLQLAIGLLGPDHPAGRAHPSVAEGVALTVRGMAEGLRHLASRREAARALTAMTLMRFCYGALFVMLLMLCRYSWSDSESDGLALLGIAVGVSGAGFFAAAVVTPWMVGRLGPLGWITACSAGAAVLVPALGLFFAPEPMLAAAFVLGLATQGAKIATDTEVQSRVDDDYRGRVFSVYDVLFNIAFVGAAAVASLMLPTDGRSVILILIVSALYAATAVFLARGERRFT
>NZ_CP029189.1|WP_150258241.1|3742588_3744055_-|CCA-tRNA-nucleotidyltransferase
MPNANEDNPSALSQVQLRAVSELLRVAPVADELGRRFQEAGFRLALVGGSVRDALLGRLGNDLDFTTDARPEDVLKIVRPWADSVWDVGIAFGTVGAQKSARVGDDVRNFQIEVTTYRSEAYDRTSRKPEVSYGDSIDEDLLRRDFTVNAMALALPEQEFVDPHGGLQDLAAGVLRTPGTPEESFSDDPLRMLRAARFAAQLDFEVAPEVVAAMKAMSERIEIVSAERVQGELNKLILSAHPRKGLGLLVDTGLADRVLPELPALRLESDEHHRHKDVYDHSLIVLEQAIALEEDGPDLVLRLAALLHDIGKPRTRRFESDGRVSFHHHEVVGAKMTKKRLTALKYSNDMIKDVSRLVELHLRFHGYGDGEWTDSAVRRYVRDAGPLLERLHKLTRSDCTTRNKRKANALSRTYDGLEERIGQLQEQEELDAIRPDLDGNEIMRVLDVGPGPVIGKAYAFLLELRLENGPMGRDAAVVALKQWWAAQA

Crispr_ID: NZ_CP029189_15

• CRISPR_ID: NZ_CP029189_15
• CRISPR_location: 4397091-4397172
• CRISPR_type: Orphan
• Repeat_type: NA
• Spacer_info: 1 spacers

Consensus repeat of NZ_CP029189_15

Consensus_repeat	Method
GGGGGCAGGGGCCCGCATTCCCAGCC	CRISPRCasFinder

spacers of NZ_CP029189_15

>15.1|4397117|30|NZ_CP029189|CRISPRCasFinder
CCCCGGCGTTTGAGGGGCGGAGCCACCCAC

CRISPR arrays and Neighbor proteins around NZ_CP029189_15

CRISPR arrays

The CRISPR arrays of NZ_CP029189_15

>merge|NZ_CP029189|15|4397091-4397172|CRISPRCasFinder
GGGGGCAGGGGCCCGCATTCCCAGCCCCCCGGCGTTTGAGGGGCGGAGCCACCCACTGGGGGCAGGGGCCGCATTCCCAGCC

>NZ_CP029189|15|14|4397091-4397172|CRISPRCasFinder
GGGGGCAGGGGCCCGCATTCCCAGCC	CCCCGGCGTTTGAGGGGCGGAGCCACCCAC
TGGGGGCAGGGGCCGCATTCCCAGCC

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP029189.1|WP_150258736.1|4385466_4386477_+|polyprenyl-synthetase-family-protein	unknown	unknown	gnl|CDD|223220
NZ_CP029189.1|WP_150258738.1|4387970_4388240_+|hypothetical-protein	unknown	unknown	gnl|CDD|372613
NZ_CP029189.1|WP_150258742.1|4395570_4396866_-|sensor-histidine-kinase	unknown	unknown	gnl|CDD|379374
NZ_CP029189.1|WP_150258748.1|4403558_4405580_+|NADH-quinone-oxidoreductase-subunit-L	unknown	unknown	gnl|CDD|235836
NZ_CP029189.1|WP_150258739.1|4388686_4390003_-|M28-family-peptidase	unknown	unknown	gnl|CDD|349873
NZ_CP029189.1|WP_150262028.1|4405618_4407172_+|NADH-quinone-oxidoreductase-subunit-M	unknown	unknown	gnl|CDD|273903
NZ_CP029189.1|WP_150262025.1|4394515_4395175_-|response-regulator	unknown	unknown	gnl|CDD|225107
NZ_CP029189.1|WP_150258743.1|4399196_4399790_+|NADH-quinone-oxidoreductase-subunit-B	unknown	unknown	gnl|CDD|235797
NZ_CP029189.1|WP_150262023.1|4388248_4388653_+|hypothetical-protein	unknown	unknown	unknown
NZ_CP029189.1|WP_150262024.1|4391346_4392420_-|2-oxoacid:ferredoxin-oxidoreductase-subunit-beta	unknown	unknown	gnl|CDD|237006
NZ_CP029189.1|WP_150262026.1|4397442_4398633_-|sensor-histidine-kinase	unknown	unknown	gnl|CDD|226951
NZ_CP029189.1|WP_150258740.1|4390213_4391161_-|EamA-family-transporter-RarD	unknown	unknown	gnl|CDD|225510
NZ_CP029189.1|WP_150258746.1|4401968_4402589_+|4Fe-4S-dicluster-domain-containing-protein	unknown	unknown	gnl|CDD|235637
NZ_CP029189.1|WP_150262027.1|4402603_4403215_+|NADH-quinone-oxidoreductase-subunit-J	unknown	unknown	gnl|CDD|376343
NZ_CP029189.1|WP_150258744.1|4399786_4401007_+|NADH-quinone-oxidoreductase-subunit-C	unknown	unknown	gnl|CDD|376317
NZ_CP029189.1|WP_150258745.1|4401003_4401969_+|NADH-quinone-oxidoreductase-subunit-H	unknown	unknown	gnl|CDD|376297
NZ_CP029189.1|WP_030388327.1|4398798_4399206_+|NADH-quinone-oxidoreductase-subunit-A	unknown	unknown	gnl|CDD|169084
NZ_CP029189.1|WP_150258741.1|4392421_4394365_-|2-oxoacid:acceptor-oxidoreductase-subunit-alpha	unknown	unknown	gnl|CDD|274738
NZ_CP029189.1|WP_150258737.1|4386699_4387908_+|outer-membrane-lipoprotein-carrier-protein-LolA	unknown	unknown	gnl|CDD|225390
NZ_CP029189.1|WP_150258747.1|4403214_4403562_+|NADH-quinone-oxidoreductase-subunit-NuoK	unknown	unknown	gnl|CDD|180218

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NZ_CP029189.1|WP_150258736.1|4385466_4386477_+|polyprenyl-synthetase-family-protein	gnl|CDD|223220	COG0142, IspA, Geranylgeranyl pyrophosphate synthase [Coenzyme metabolism].	3.70307e-89
NZ_CP029189.1|WP_150258738.1|4387970_4388240_+|hypothetical-protein	gnl|CDD|372613	pfam13467, RHH_4, Ribbon-helix-helix domain. This short bacterial protein contains a ribbon-helix-helix domain that is likely to be DNA-binding.	0.0017797
NZ_CP029189.1|WP_150258742.1|4395570_4396866_-|sensor-histidine-kinase	gnl|CDD|379374	pfam13796, Sensor, Putative sensor. This family is often found at the N-terminus of proteins containing pfam07730 and pfam02518. The N-termini of proteins containing these two domains often function in stimulus sensing.	1.50652e-40
NZ_CP029189.1|WP_150258741.1|4392421_4394365_-|2-oxoacid:acceptor-oxidoreductase-subunit-alpha	gnl|CDD|274738	TIGR03710, OAFO_sf, 2-oxoacid:acceptor oxidoreductase, alpha subunit. This family of proteins contains a C-terminal thiamine diphosphate (TPP) binding domain typical of flavodoxin/ferredoxin oxidoreductases (pfam01855) as well as an N-terminal domain similar to the gamma subunit of the same group of oxidoreductases (pfam01558). The genes represented by this model are always found in association with a neighboring gene for a beta subunit (TIGR02177) which also occurs in a 4-subunit (alpha/beta/gamma/ferredoxin) version of the system. This alpha/gamma plus beta structure was used to define the set of sequences to include in this model. This pair of genes is not consistantly observed in proximity to any electron acceptor genes, but is found next to putative ferredoxins or ferredoxin-domain proteins in Azoarcus sp. EbN1, Bradyrhizobium japonicum USDA 110, Frankia sp. CcI3, Rhodoferax ferrireducens DSM 15236, Rhodopseudomonas palustris BisB5, Os, Sphingomonas wittichii RW1 and Streptomyces clavuligerus. Other potential acceptors are also sporadically observed in close proximity including ferritin-like proteins, reberythrin, peroxiredoxin and a variety of other flavin and iron-sulfur cluster-containing proteins. The phylogenetic distribution of this family encompasses archaea, a number of deeply-branching bacterial clades and only a small number of firmicutes and proteobacteria. The enzyme from Sulfolobus has been characterized with respect to its substrate specificity, which is described as wide, encompassing various 2-oxoacids such as 2-oxoglutarate, 2-oxobutyrate and pyruvate. The enzyme from Hydrogenobacter thermophilus has been shown to have a high specificity towards 2-oxoglutarate and is one of the key enzymes in the reverse TCA cycle in this organism. Furthermore, considering its binding of coenzyme A, it can be reasonably inferred that the product of the reaction is succinyl-CoA. The genes for this enzyme in Prevotella intermedia 17, Persephonella marina EX-H1 and Picrophilus torridus DSM 9790 are in close proximity to a variety of TCA cycle genes. Persephonella marina and P. torridus are believed to encode complete TCA cycles, and none of these contains the lipoate-based 2-oxoglutarate dehydrogenase (E1/E2/E3) system. That system is presumed to be replaced by this one. In fact, the lipoate system is absent in most organisms possessing a member of this family, providing additional circumstantial evidence that many of these enzymes are capable of acting as 2-oxoglutarate dehydrogenases and.	0
NZ_CP029189.1|WP_150258739.1|4388686_4390003_-|M28-family-peptidase	gnl|CDD|349873	cd03876, M28_SGAP_like, M28 Zn-peptidase Streptomyces griseus aminopeptidase and similar proteins. Peptidase family M28; Streptomyces griseus Aminopeptidase (SGAP, Leucine aminopeptidase (LAP), aminopeptidase S, Mername-AA022 peptidase) subfamily. SGAP is a di-zinc exopeptidase with high preference towards large hydrophobic amino-terminal residues, with Leu being the most efficiently cleaved. It can accommodate all except Pro and Glu residues in the P1' position. It is a monomeric (30 kDa), calcium-activated and calcium-stabilized enzyme; its activation by calcium correlates with substrate specificity and it has thermal stability only in the presence of calcium. Although SGAP contains a calcium binding site, it is not conserved in many members of this subfamily. SGAP is present in the extracellular fluid of S. griseus cultures.	5.53508e-138
NZ_CP029189.1|WP_150262028.1|4405618_4407172_+|NADH-quinone-oxidoreductase-subunit-M	gnl|CDD|273903	TIGR01972, NADH-quinone_oxidoreductase_subunit_M, proton-translocating NADH-quinone oxidoreductase, chain M. This model describes the 13th (based on E. coli) structural gene, M, of bacterial NADH dehydrogenase I, as well as chain 4 of the corresponding mitochondrial complex I and of the chloroplast NAD(P)H dehydrogenase complex. [Energy metabolism, Electron transport].	5.5407e-162
NZ_CP029189.1|WP_150262025.1|4394515_4395175_-|response-regulator	gnl|CDD|225107	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription].	3.47675e-38
NZ_CP029189.1|WP_150258743.1|4399196_4399790_+|NADH-quinone-oxidoreductase-subunit-B	gnl|CDD|235797	PRK06411, PRK06411, NADH-quinone oxidoreductase subunit NuoB.	3.36074e-88
NZ_CP029189.1|WP_150258748.1|4403558_4405580_+|NADH-quinone-oxidoreductase-subunit-L	gnl|CDD|235836	PRK06590, PRK06590, NADH:ubiquinone oxidoreductase subunit L; Reviewed.	1.34891e-150
NZ_CP029189.1|WP_150262024.1|4391346_4392420_-|2-oxoacid:ferredoxin-oxidoreductase-subunit-beta	gnl|CDD|237006	PRK11867, PRK11867, 2-oxoglutarate ferredoxin oxidoreductase subunit beta; Reviewed.	7.16653e-173
NZ_CP029189.1|WP_030388327.1|4398798_4399206_+|NADH-quinone-oxidoreductase-subunit-A	gnl|CDD|169084	PRK07756, PRK07756, NADH-quinone oxidoreductase subunit A.	5.86296e-35
NZ_CP029189.1|WP_150258740.1|4390213_4391161_-|EamA-family-transporter-RarD	gnl|CDD|225510	COG2962, RarD, Predicted permeases [General function prediction only].	3.62666e-96
NZ_CP029189.1|WP_150258746.1|4401968_4402589_+|4Fe-4S-dicluster-domain-containing-protein	gnl|CDD|235637	PRK05888, PRK05888, NADH-quinone oxidoreductase subunit NuoI.	1.67588e-41
NZ_CP029189.1|WP_150262027.1|4402603_4403215_+|NADH-quinone-oxidoreductase-subunit-J	gnl|CDD|376343	pfam00499, Oxidored_q3, NADH-ubiquinone/plastoquinone oxidoreductase chain 6.	1.31274e-32
NZ_CP029189.1|WP_150258744.1|4399786_4401007_+|NADH-quinone-oxidoreductase-subunit-C	gnl|CDD|376317	pfam00329, Complex1_30kDa, Respiratory-chain NADH dehydrogenase, 30 Kd subunit.	8.598e-40
NZ_CP029189.1|WP_150258745.1|4401003_4401969_+|NADH-quinone-oxidoreductase-subunit-H	gnl|CDD|376297	pfam00146, NADHdh, NADH dehydrogenase.	2.53544e-110
NZ_CP029189.1|WP_150262026.1|4397442_4398633_-|sensor-histidine-kinase	gnl|CDD|226951	COG4585, COG4585, Signal transduction histidine kinase [Signal transduction mechanisms].	3.0583e-29
NZ_CP029189.1|WP_150258737.1|4386699_4387908_+|outer-membrane-lipoprotein-carrier-protein-LolA	gnl|CDD|225390	COG2834, LolA, Outer membrane lipoprotein-sorting protein [Cell envelope biogenesis, outer membrane].	6.72088e-11
NZ_CP029189.1|WP_150258747.1|4403214_4403562_+|NADH-quinone-oxidoreductase-subunit-NuoK	gnl|CDD|180218	PRK05715, PRK05715, NADH-quinone oxidoreductase subunit NuoK.	9.14765e-34

Protein sequences

>NZ_CP029189.1|WP_150258742.1|4395570_4396866_-|sensor-histidine-kinase
MGKGTGGGMGAVLRAPVEGRTWREFGYLLIGLPLSTLYFSLTITGVSLGAGLLVTFLGVPVLAGMLAMCRGFGQLERARVRAMLGTDIAAPAPIRAKKAGPLAAMGALLKSGSAWRHALYSVLHFPWAVFSFCLSVTLWACGWAYLLYPLWFWVFPAYTNQPGLQLFENDGYTFYLDSPVMIALTSLVGLALTLATPWVIRALTTVDRVMVGGLLGASSLATRVSELESDRGVVVDTAAADLRRIERDLHDGAQARLVALAMDLGLAKEKLTEDPQAAARMVDEAHGEVKIALQELRDLARGIHPAVLTDRGLDAALSSVASRCAVPVRVAVDLPARPAAAIEGIAYFTVSELLQNVSKHALARSASVDVWKSGERLLIQVADDGRGGAGPREGTGLAGLTERLDAVDGVLVVDSPAGGGTTVTAELPWRP
>NZ_CP029189.1|WP_150262025.1|4394515_4395175_-|response-regulator
MRVVIAEDSVLLREGLTRLLTDRGHDVVAGVGDAEALIKTVADLAAEGALPDVVVADVRMPPTHTDEGVRAAVRLRRDHPGIGVLVLSQYVEEQYATELLAGSSTGVGYLLKDRVAEVREFLDAVVRVARGGTALDPEVVAQLLGRSRKQDVLAGLTPREREVLGLMAEGRTNSAVAKQLVVSDGAVEKHVSNIFMKLGLSPSDGDHRRVLAVLTYLKS
>NZ_CP029189.1|WP_150258741.1|4392421_4394365_-|2-oxoacid:acceptor-oxidoreductase-subunit-alpha
MTSQVSSPAEQADGAGGAVVGGQRTPESPGGKEVRRLDRVIIRFAGDSGDGMQLTGDRFTSETASFGNDLSTLPNFPAEIRAPAGTLPGVSSFQLHFADHDILTPGDAPNVLVAMNPAALKANIADLPRGAEIIINTDEFTKRPMAKVGYATSPLEDGSLDAYSLHPVPLTTLTVEALKDFGLSRKEAERSKNMFALGLLSWMYHRPTEGTENFLRQKFAKKPEIAEANVVAFRAGWNFGETTEDFAVSYEVAPATRAFPTGTYRNISGNLALSYGLVAASQQADLPLYLGSYPITPASDILHELSKHKNFGVRTFQAEDEIAGIGAALGAAFGGALGVTTTSGPGVALKSEAIGLAVSLELPLLIVDIQRGGPSTGLPTKTEQADLLQAMYGRNGEAPVPIVAPRTPADCFDAALDAARIALTYRTPVFLLSDGYLANGSEPWRIPEVADLPDLKVKFATGANHTLSDGTEVFWPFKRDPETLARPWAIPGTPGLEHRIGGIEKQDGTGNISYDPANHDLMVRTRQAKIDGIRVPDLDVDDPDGATTLVLGWGSTYGPITAAVRRLRNTGLPIAQAHLRHVNPFPRNLGEVLERYEKVVVPEMNLGQLATLIRAKYLVDAQSYNQVNGMPFKAEQLATVLKEAIDD
>NZ_CP029189.1|WP_150262024.1|4391346_4392420_-|2-oxoacid:ferredoxin-oxidoreductase-subunit-beta
MTEAAADGARTLLSLVPKAESKQSMKDFKSDQEVRWCPGCGDYAVLAAVQGFMPELGLAKENIVFVSGIGCSSRFPYYMNTYGMHSIHGRAPAIATGLATSRRDLSVWVVTGDGDALSIGGNHLIHALRRNVNLKILLFNNRIYGLTKGQYSPTSEVGKITKSTPMGSLDAPFNPVSLAIGAEASFVARTVDSDRKHLTEVLRQAADHQGTALVEIYQNCNIFNDGAFEVLKDKDQALEAVIRLEDGQPIRFGADDAKGVVRNPATGDLEVVEVTAADEARVLVHDARNASATTAFALSRLADPDTLHHTPIGVFRNVERPVYDTLMADQLDAAVDRSGKGDLGALLTGNDTWTVVG
>NZ_CP029189.1|WP_150258740.1|4390213_4391161_-|EamA-family-transporter-RarD
MKAENEQRAGLLYGFGAYGMWGLVPLFWPLLMPAGAVEILAHRMTWSLAVVGLALLVVRRWGWIRELLRQPRKLGLTALAASVISVNWGLYIWSVNNGHVVESSLGYFINPLVSIAMGVLVLGERLRRAQWVAVGLSFVAVLVLAVGYGRPPWISLVLACSFATYGLIKKKLNMGGLESLAAETAMLFLPALGYLLWLGAQGQSTFTSQGVGHALLLAATGLVTAIPLVLFGAAAIRVPLSTLGLLQYMAPVFQFGLGVLYFHEAMPPERWAGFSLVWAALVLLTWDALRTARRSRAALAAAAPAALATPAREPA
>NZ_CP029189.1|WP_150258739.1|4388686_4390003_-|M28-family-peptidase
MSLSVSRRLAAVTAFAVAGLFASTAPAALAAPTAVAAAPTPPDIPLANVKAHLSQLSTIAANNGGNRAHGRAGYKASIDYVKGKLDAAGFTTTLQTFTSSGATGYNLIADWPGGDPNSVLMAGSHLDSVTSGAGMNDNGSGSAAVLETALAVSRAGLQPTKHLRFGWWGAEELGLIGSKYYVNNLPAAEKAKISGYLNFDMIGSPNPGYFVYDDDPTIEQTFKNYYAGLGIPTEIETEGDGRSDHAPFKSAGIPVGGLFSGADYTKTAAQAQKWGGTSGQAFDRCYHSSCDSLTNINDTALDRNSDAVAYAIWTLGAATPVPPGQSFENTTDVNIPDSPAAAVSSPITVSGVTGNAPATTKVDVNIVHTYRGDLVVDLLAPDGTVYNLHNRSGGSADNLVQTYTVNASSEVANGVWKLRVKDSAAQDVGYINSWKITF
>NZ_CP029189.1|WP_150262023.1|4388248_4388653_+|hypothetical-protein
MEWAWTALAHHLPSDPAVWDPSGVAAAVARHQNDLVLVPEQPAPDTAWRAAAFLHTLAVCPALESPMNEFYAAAATRSYLRVAGAEQLPSPEELGDLVEAAKLGRADIAAVAEELRARIQGPLQPSSQARAEDA
>NZ_CP029189.1|WP_150258738.1|4387970_4388240_+|hypothetical-protein
MSLPTLVPFPLRVQHTRCTVLDMSRHVTIRLDEEFHERLKARAAALGTTVTALITEVTERELDEDRKNFLSGIEEFADHWGYFQQRFGN
>NZ_CP029189.1|WP_150258737.1|4386699_4387908_+|outer-membrane-lipoprotein-carrier-protein-LolA
MAPNTKTSRKAARYAVPVAVAGVAAATVAMVPAFANAGGPDLPKVTAQQLIEKVAASDVQQLSGTARITTDLGLPKIASGLLGGGGVAGGSANPEDKVAQLANGSHTLRVAADGPDRQRLTFLDGKDEYSLIHNGDDVWGYDSKSNEVFHEKNAEAGQRKDGGKEHKTGDRLAASPQKLAEEILKEAGPTTDVSVGDTAQVAGRDAYQLVLKPKQAGSTVGSVQIAVDAKNGVPLRVQLLSAQGGKPIVDAGFTKVDFAKPAADTFSFTAPKGAKVTEGADGPGKGGADEHWKALDSIPGLGGLTGGPGGQGDMKVLGEGWATIARIDSGSGRSLKDLENDKNAPKEAKQFLDSLGDKVTGKFGEGRVLSTRLVNALITDDGKVYVGAVTKDALVKAADANK
>NZ_CP029189.1|WP_150258736.1|4385466_4386477_+|polyprenyl-synthetase-family-protein
MTVVGPFGLSVRDQALETDVQAGLAAVEAGLLEATKSEVPFITEAAQHLVRAGGKRFRPLLVMLASRFGDPYAPGIVPSAVVVELTHLATLYHDDVMDEADVRRGVESANARWGNSVAVLTGDFLFARASHILADLGPEAVRIQAEAFERLVTGQILETAGPRDGRDPVAHYLDVIAGKTGSLIAVSGRFGALMSGADESVVDILTQYGERLGTAFQLADDVLDIASDAHESGKTPGTDLREGIPTLPVLRLREMAAQGGDPADLELVRLLDGDLTDDARHAEVLTRLRAHPALERARRDTIQYAEDARAMLAPLPECFAKSALEELCDAVVHRAG
>NZ_CP029189.1|WP_150262026.1|4397442_4398633_-|sensor-histidine-kinase
MPDNDRPPPVRAVFSAVTWKEIAYLVSNLPVAIVGFVYAVVMVSTAGGLAVTAVGIPLLACGLYLSRQLGRLDRARARGLLGVRVDEPTPIPGPKRSGGFFPWLWTSIKDPVGWRTVLYQLIRLPWGVLTFTVALTGLFVLWPVLPYLVRLLANADRAMVRGLLSPSDDLERRIAELESDRGVVVDTAAADLRRIERDLHDGAQARLVALAMGLGLAKEKLLEDPEGAAAMVDEAHGEVKLALQELRDLARGIHPAVLTDRGLDAALSSVAARCVVPVKVAVDLQGDPAGSGAGSGARPAEAIEGIAYFVVSELLQNVSKHAGPGARGATAEVWRAGARLMIRVSDDGRGGASPSGGSGLAGLAERLGAVDGVLVVDSPEGAGTVVTAELPWRDRG
>NZ_CP029189.1|WP_030388327.1|4398798_4399206_+|NADH-quinone-oxidoreductase-subunit-A
MPEPTVSTVTVLAADYFRSYSVVGLLAVLGVLFVAVAFGAGRLLRPVVPTPEKLLTYECGVDPVGEGWAHTQVRYYVYAFLYVIFAVDSIFLFPWATVFAAAGYGATTLVEMFIFLGFLAVGLLYAYKKGVLEWT
>NZ_CP029189.1|WP_150258743.1|4399196_4399790_+|NADH-quinone-oxidoreductase-subunit-B
MDVTPQPELLPEPKRLGVLSRLAPEPMKVVLNWGRRYSLWVFNFGLACCAIEFIAASMARHDFIRLGVIPFAPGPRQADLMIVSGTVTDKMAPAVKRLYEQMPEPKYVISFGACSNCGGPYWDSYSVTKGVDQIIPVDVYVPGCPPRPEALLQGILKLQEKIARESLAERYAAGPSVSQLTSGLVTPPPAPAQGAGA
>NZ_CP029189.1|WP_150258744.1|4399786_4401007_+|NADH-quinone-oxidoreductase-subunit-C
MNLYDSLPDAAPTVFGAEAVAELSYDVLTVDVPVGSWISALEIARDKLGCTYFDWLSAVDEPGTGFRICAHVASLENHRVRRLLLRTTVPHSAASLPSAVAVYAGAEWHERETFEMFGVTFTDHPHLVPLLLPENFEGHPLRKDFVLAARVAKAWPGAKEPGETHDPDAPKRRQMLPPGVPDPNDWGPMKGQLPPAPSRPARTPRAAGAAGAAARTPREGAPVRRTRSVTEGSATQPPSDAAGAASPGAEAPARPPRRTRSVADGSASQAAGTPAPDAAAPAPATEAPARPPRRNRSVADGSASQVPASDGGSAGRADDADAGTGEAARPPHRTAPRSSDAPWHDPKPAFDERAPRPTPETEPEAGPEPTPEAGTVPEPEAGPTPEPRPAEPETDTDPTTDTGGTA
>NZ_CP029189.1|WP_150258745.1|4401003_4401969_+|NADH-quinone-oxidoreductase-subunit-H
MNDVLDVALRLIVVFAVFLVLPLVVGQTEHKVMAHMQGRLGPMYAGGFHGWAQLVADGVKFAQKEDIVPAGADRRIFQLAPAVALLPYLLVLLAIPIGPGEGAVGQVIDAGLFFALAVMGVGVLGSLMAGWASANKFSLLGGLRTAAQLLAYELPMLLAAASVAMAAGTVSLPGIVEAFEWWWLPWQIVGALVFFVAGLAELQRPPFDMPVADSEIIFGAYTEYTGLRFALFLLAEYAGIVVLCALTTVLFLGGWHGPFGDDLGWVWTLLKIAVLAFVVIWLRVSYPRLREDQLQKLAWTTLIPLALAQIALTGIVKVAIQ
>NZ_CP029189.1|WP_150258746.1|4401968_4402589_+|4Fe-4S-dicluster-domain-containing-protein
MPIPGSGLAKGLAVTLRTMTKRSHTAQYPDVQPELPPRSRGVIGLFEENCTVCMLCARECPDWCIYIDSHKETVPASTPGGRERSRNVLDRFAIDFSLCMYCGICIEVCPFDALFWSPEFEYAETDIHELTHERDKLREWMWTVPAPPALDPAAEEPKEIAAARKAVEKAEAAAAAAAAAEAAAAEAAAQAAETEPPTDPTPEGDA
>NZ_CP029189.1|WP_150262027.1|4402603_4403215_+|NADH-quinone-oxidoreductase-subunit-J
MAAAATTTGPGFLSPTGVEIAFVLVGLATLGAALVTVTTKQLVHAALWLVVALGGIAVEYLLLTAEFIAWVQVLIYLGSVVVLLLFGLMLTKAPIGRSPDADSGNRWTALGVAVVAAVSLVWVVVDAFRTTWIDLDGPVQGSTKVSGEILFQHWVLPFEALSVLLLAALIGAIVLSRRNDPADPADSAEAATPAGPGEKKGRR
>NZ_CP029189.1|WP_150258747.1|4403214_4403562_+|NADH-quinone-oxidoreductase-subunit-NuoK
MHLAYPAVLAALLFCTGLYGVLARRNAILVLMSVELMLNAVNLNLVAFDVWLRDTLHAGQALTLFTIAIAAAEIGIGLAIVLMVYRNRGTSDVDRLRDTAEGHEPAANNQSEVTA
>NZ_CP029189.1|WP_150258748.1|4403558_4405580_+|NADH-quinone-oxidoreductase-subunit-L
MSTTTLAVLVPLLPFLGAVAGLLLGRSAPGFVRPLAILPTLAAAVLAVLVAVRQGGGETISAATELTPTGSVPLELSLYIDGFAALVAVLVGVVATCVQVYSTAYLREDPRYPSYAALVSLFTSAMLLVVYSGDLMVLLVGWEVMGICSYFLVGHYWETEAARSASLKAFLVTKLGDVPFLIGLFALAADAGSFEIPTILRTVAAGGIDHPTLIALLLLAGVAGKSAQFPLHTWLPDAMAGPTPVSALIHAATMVAAGVYFIARLLPVFATSGAALVVMAAMAAVTMVGSGLAAIAQDDIKRVLAYSTIGQLGYMVGALAVGDRGAAVFHLLSHGAFKALLFLGAGVIIHAAGTNSLGVMSRMDGLAKRIPDAFWTMTIALLALAAVPPFAGFFSKEAVLVAAEHTATGHSEFVPSAAGWLVLVAGLLTALLTAAYATRLWLMAFRGRGAAAPDHGKEPLAMTGVLWLLAIPSIGFGLVAGPISNWFDGGDLTPTVVTSVLGTGAAAIGAMLTYALWQRASAKAALAAAAGTRAAATTGTPASVAAAESAAEAPEVAEVTHDHPAVPAGPAADPGKAFLGPLHRHAAAGFHLDAVYDRLFVRPVQAAASLVRFLDREVVDTYVRGAGTGTQLLGSLVRRAQTGNVQSYLSALLAGAVVLAIATAVLANVNAGS
>NZ_CP029189.1|WP_150262028.1|4405618_4407172_+|NADH-quinone-oxidoreductase-subunit-M
MQFLLAFIVAAPLLGSAAALLPAPPGLKGKSPEQAVLRHGVTVTGVILAAAVALTLGFDHDAPSRIQATTDISWIQALNVRIHLGVDGISLPLLLMTALLFFLCALYSYFKLPAGPSPKAFVALLLVLESGTLATFAVLDLLLFFLAFEMVLIPMYFLIARWGGAQRQAAAWKFILYTLLGSVVMLLGLLLIGVTAGTFDMVALASDNGRELSHSTQLLAVLAIGIGLAVKTPMWPLHSWLPDAHTAAPTVGSVLLAGVLLKMGTYGFVRILLPVTPDGMATFAPYLGAFAAVGIVYGSLACLALARKGNKGDLKRLIAYSSVGHMGFVLLGIASMTPTGVNGALFANIAHGLITGLLFFLVGALKDRYGTADLDTLAGATGAALYGRAPRMGAFLAFAAVASLGLPGLAGFWGEMLALFGAFDPAEGLSRPAFLTYVAVGAFGTLLTAAYLLIVVRRVCMGDPKAGPELAVADIQRYEFAAWTPLVALTVLAGLWPAVLLGLTDPAVQKLLAGGNS

Crispr_ID: NZ_CP029189_16

• CRISPR_ID: NZ_CP029189_16
• CRISPR_location: 4716580-4716671
• CRISPR_type: Orphan
• Repeat_type: NA
• Spacer_info: 1 spacers

Consensus repeat of NZ_CP029189_16

Consensus_repeat	Method
GCCCAGGACGGTCGTCGGACGCGTGAGGGA	CRISPRCasFinder

spacers of NZ_CP029189_16

>16.1|4716610|32|NZ_CP029189|CRISPRCasFinder
GAAGGCCCACGAGGGTGGGCGGCCTATGTCCA

CRISPR arrays and Neighbor proteins around NZ_CP029189_16

CRISPR arrays

The CRISPR arrays of NZ_CP029189_16

>merge|NZ_CP029189|16|4716580-4716671|CRISPRCasFinder
GCCCAGGACGGTCGTCGGACGCGTGAGGGAGAAGGCCCACGAGGGTGGGCGGCCTATGTCCAGCCCAGGACGGTCGTCGGACGCTGAGGGAT

>NZ_CP029189|16|15|4716580-4716671|CRISPRCasFinder
GCCCAGGACGGTCGTCGGACGCGTGAGGGA	GAAGGCCCACGAGGGTGGGCGGCCTATGTCCA
GCCCAGGACGGTCGTCGGACGCTGAGGGAT

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP029189.1|WP_150258966.1|4719435_4720398_+|LysR-family-transcriptional-regulator	unknown	unknown	gnl|CDD|223656
NZ_CP029189.1|WP_150258960.1|4713628_4714840_-|aminotransferase-class-I/II-fold-pyridoxal-phosphate-dependent-enzyme	unknown	unknown	gnl|CDD|181738
NZ_CP029189.1|WP_150258969.1|4723645_4725244_-|amidohydrolase-family-protein	unknown	unknown	gnl|CDD|238622
NZ_CP029189.1|WP_150258962.1|4717270_4717747_+|macro-domain-containing-protein	unknown	unknown	gnl|CDD|394873
NZ_CP029189.1|WP_150258956.1|4709345_4710533_-|toxic-anion-resistance-protein	unknown	unknown	gnl|CDD|377557
NZ_CP029189.1|WP_150258959.1|4713114_4713507_-|hypothetical-protein	unknown	unknown	unknown
NZ_CP029189.1|WP_150258970.1|4725254_4726547_-|amino-acid-deaminase	unknown	unknown	gnl|CDD|143492
NZ_CP029189.1|WP_030034983.1|4720803_4720989_-|hypothetical-protein	unknown	unknown	unknown
NZ_CP029189.1|WP_150258964.1|4718328_4718880_+|GNAT-family-N-acetyltransferase	unknown	unknown	gnl|CDD|236088
NZ_CP029189.1|WP_150258961.1|4715304_4715538_+|hypothetical-protein	unknown	unknown	unknown
NZ_CP029189.1|WP_150262058.1|4710529_4711651_-|hypothetical-protein	unknown	unknown	unknown
NZ_CP029189.1|WP_150258954.1|4705134_4706964_+|phosphoenolpyruvate-carboxykinase-(GTP)	unknown	unknown	gnl|CDD|235256
NZ_CP029189.1|WP_150258968.1|4722605_4723622_-|YdcF-family-protein	unknown	unknown	gnl|CDD|99750
NZ_CP029189.1|WP_150258963.1|4717779_4718139_-|hypothetical-protein	unknown	unknown	unknown
NZ_CP029189.1|WP_150258965.1|4718876_4719329_-|nitroreductase-family-deazaflavin-dependent-oxidoreductase	unknown	unknown	gnl|CDD|281995
NZ_CP029189.1|WP_150258958.1|4712238_4712904_-|RDD-family-protein	unknown	unknown	gnl|CDD|377640
NZ_CP029189.1|WP_150262057.1|4707678_4709277_-|VWA-domain-containing-protein	unknown	unknown	gnl|CDD|379243
NZ_CP029189.1|WP_150258955.1|4707080_4707692_-|hypothetical-protein	unknown	unknown	unknown
NZ_CP029189.1|WP_150258957.1|4711767_4712190_+|hypothetical-protein	unknown	unknown	unknown
NZ_CP029189.1|WP_150258967.1|4721178_4722540_+|S1-family-peptidase	unknown	unknown	gnl|CDD|213177

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NZ_CP029189.1|WP_150258966.1|4719435_4720398_+|LysR-family-transcriptional-regulator	gnl|CDD|223656	COG0583, LysR, Transcriptional regulator [Transcription].	1.70034e-26
NZ_CP029189.1|WP_150258960.1|4713628_4714840_-|aminotransferase-class-I/II-fold-pyridoxal-phosphate-dependent-enzyme	gnl|CDD|181738	PRK09265, PRK09265, aminotransferase AlaT; Validated.	0
NZ_CP029189.1|WP_150258962.1|4717270_4717747_+|macro-domain-containing-protein	gnl|CDD|394873	cd02901, Macro_Poa1p-like, macrodomain, Poa1p-like family. Macrodomains are found in a variety of proteins with diverse cellular functions, as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Macrodomains can recognize ADP-ribose (ADPr) in both its free and protein-linked forms, in related ligands, such as O-acyl-ADP-ribose (OAADPr), and even in ligands unrelated to ADPr. Members of this family show similarity to the yeast protein Poa1p, reported to be a phosphatase specific for Appr-1"-p, a tRNA splicing metabolite. Poa1p may play a role in tRNA splicing regulation.	2.45691e-32
NZ_CP029189.1|WP_150258956.1|4709345_4710533_-|toxic-anion-resistance-protein	gnl|CDD|377557	pfam05816, TelA, Toxic anion resistance protein (TelA). This family consists of several prokaryotic TelA like proteins. TelA and KlA are associated with tellurite resistance and plasmid fertility inhibition.	6.38275e-89
NZ_CP029189.1|WP_150258964.1|4718328_4718880_+|GNAT-family-N-acetyltransferase	gnl|CDD|236088	PRK07757, PRK07757, N-acetyltransferase.	0.00100372
NZ_CP029189.1|WP_150258970.1|4725254_4726547_-|amino-acid-deaminase	gnl|CDD|143492	cd06818, PLPDE_III_cryptic_DSD, Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Bacterial Cryptic D-Serine Dehydratase. This subfamily is composed of Burkholderia cepacia cryptic D-serine dehydratase (cryptic DSD), which is also called D-serine deaminase, and similar bacterial proteins. Members of this subfamily are fold type III PLP-dependent enzymes with similarity to bacterial alanine racemase (AR), which contains an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain. AR exists as dimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Based on similarity, it is possible cryptic DSDs may also form dimers. Cryptic DSDs are distinct from the ubiquitous bacterial DSDs coded by the dsdA gene, mammalian L-serine dehydratases (LSD) and mammalian serine racemase (SerRac), which are fold type II PLP-dependent enzymes. At present, the enzymatic and biochemical properties of cryptic DSDs are still poorly understood. Typically, DSDs catalyze the dehydration of D-serine to aminoacrylate, which is rapidly hydrolyzed to pyruvate and ammonia.	8.40867e-156
NZ_CP029189.1|WP_150258967.1|4721178_4722540_+|S1-family-peptidase	gnl|CDD|213177	cd12214, ChiA1_BD, chitin-binding domain of Chi A1-like proteins. This group contains proteins related to the chitin binding domain of chitinase A1 (ChiA1) of Bacillus circulans WL-12. Glycosidase ChiA1 hydrolyzes chitin and is comprised of several domains: the C-terminal chitin binding domain, an N-terminal and catalytic domain, and 2 fibronectin type III-like domains. Chitinases function in invertebrates in the degradation of old exoskeletons, in fungi to utilize chitin in cell walls, and in bacteria which use chitin as an energy source. Bacillus circulans WL-12 ChiA1 facilitates invasion of fungal cell walls. The ChiAi chitin binding domain is required for the specific recognition of insoluble chitin. although topologically and structurally related, ChiA1 lacks the characteristic aromatic residues of Erwinia chrysanthemi endoglucanase Z (CBD(EGZ)).	4.13211e-15
NZ_CP029189.1|WP_150258954.1|4705134_4706964_+|phosphoenolpyruvate-carboxykinase-(GTP)	gnl|CDD|235256	PRK04210, PRK04210, phosphoenolpyruvate carboxykinase (GTP).	0
NZ_CP029189.1|WP_150258968.1|4722605_4723622_-|YdcF-family-protein	gnl|CDD|99750	cd06259, YdcF-like, YdcF-like. YdcF-like is a large family of mainly bacterial proteins, with a few members found in fungi, plants, and archaea. Escherichia coli YdcF has been shown to bind S-adenosyl-L-methionine (AdoMet), but a biochemical function has not been idenitified. The family also includes Escherichia coli sanA and Salmonella typhimurium sfiX, which are involved in vancomycin resistance; sfiX may also be involved in murein synthesis.	2.4264e-40
NZ_CP029189.1|WP_150258965.1|4718876_4719329_-|nitroreductase-family-deazaflavin-dependent-oxidoreductase	gnl|CDD|281995	pfam04075, F420H2_quin_red, F420H(2)-dependent quinone reductase. This family of proteins is found in the genera Mycobacterium and Streptomyces. Member protein Rv3547 has been characterized as a deazaflavin-dependent nitroreductase. Rv1558 is an F420H(2)-dependent quinone reductase involved in oxidative stress protection.	6.47819e-30
NZ_CP029189.1|WP_150258958.1|4712238_4712904_-|RDD-family-protein	gnl|CDD|377640	pfam06271, RDD, RDD family. This family of proteins contain three highly conserved amino acids: one arginine and two aspartates, hence the name of RDD family. This region contains two predicted transmembrane regions. The arginine occurs at the N-terminus of the first helix and the first aspartate occurs in the middle of this helix. The molecular function of this region is unknown. However this region may be involved in transport of an as yet unknown set of ligands (Bateman A pers. obs.).	2.02287e-23
NZ_CP029189.1|WP_150262057.1|4707678_4709277_-|VWA-domain-containing-protein	gnl|CDD|379243	pfam13531, SBP_bac_11, Bacterial extracellular solute-binding protein. This family includes bacterial extracellular solute-binding proteins.	3.09732e-17
NZ_CP029189.1|WP_150258969.1|4723645_4725244_-|amidohydrolase-family-protein	gnl|CDD|238622	cd01297, D-aminoacylase, D-aminoacylases (N-acyl-D-Amino acid amidohydrolases) catalyze the hydrolysis of N-acyl-D-amino acids to produce the corresponding D-amino acids, which are used as intermediates in the synthesis of pesticides, bioactive peptides, and antibiotics.	1.99273e-106

Protein sequences

>NZ_CP029189.1|WP_150258961.1|4715304_4715538_+|hypothetical-protein
MVFVVGDMEIATVGTDGDDRAIEFRVRPEGALEEACFAIFREHDQDWESARLTIDPHSGSVPLAAVEWAVEFAREYL
>NZ_CP029189.1|WP_150258960.1|4713628_4714840_-|aminotransferase-class-I/II-fold-pyridoxal-phosphate-dependent-enzyme
MQVIQSTKLANVCYEIRGPVLEEAMRLEAAGHRILKLNTGNPAAFGFECPPEILEDMLRNLGTAHGYGDAKGLLSARRAVMQHYQTKGIDLDVEDIYLGNGVSELIQMSMQALLDDGDEVLVPAPDYPLWTASVSLAGGTAVHYRCDEQSDWMPDLADIERKVTDRTKAIVIINPNNPTGAVYDEEMLRGLTDIARRHNLVVCSDEIYDRILYDGAVHHNTAAIAPDLLTLTFNGLSKNYRVAGYRAGWMAVCGPKKHATCYIEGLTILANMRLCANMPSQYAVATALGGRQSIEDLVLPGGRILEQRNVAYDLLTQIPGVTCVKPKGALYAFPRLDPSVYKIKDDRQMVLDLLRAEKIMVVHGTGFNWPEPDHFRIVTLPNAKDLADAVTRIGNFLDGYSQL
>NZ_CP029189.1|WP_150258959.1|4713114_4713507_-|hypothetical-protein
MYEPLRTKPVVRATGATPDDYPHSSRGEALDIQLAGHLSALLAVTDELGLDEGAAEIAAQVARLRGARPTRAPRHDAADTAALHQRAHDLAARALLVAASRADTTVAILAAERMDAHAAALKSSDLAGAL
>NZ_CP029189.1|WP_150258958.1|4712238_4712904_-|RDD-family-protein
MSFGDPNNPYGQQPPQGQPGYPQQAPQGVPPQYGYPQQPQQPGAVPQYGYPQQTPPPYGAYPPPGMHAPGMPGMPGSGMPPLAHWGLRVGATLLDGLIMAGPMYALTGIGVAVSGDESGDTIAGILSLIGMLYFLGMLFFQLYKEGTTGQTFGKKIVGISVHRELDGATLGFGMAFVRKLAHILDGAACYIGYLWPLWDEKKQTFADKVCSTVVIKVNKNG
>NZ_CP029189.1|WP_150258957.1|4711767_4712190_+|hypothetical-protein
MSTLKWQGWLVGLVTVAGLLVFAPLGLYVWASGGDPPQAPPRAAVEDVRVTGCRIDPASRRVVAAVEATGRAEGPGAYVVTVEFRDSAEADPQRRAAQALVKIPGVAPGATEYGEAVGPVWPVATVPWCGVAGAEFTPTA
>NZ_CP029189.1|WP_150262058.1|4710529_4711651_-|hypothetical-protein
MGFREHAAPVRRILGIVLGLLLIGGVLYVVAVQGQDHPEGTATKTVRGVIGSEKSEFFRDPDVVKALAAKGYTVKTETSGSWAMDQLALKDFDFAFPSSSEPAREVAAAAGLKGAQETKPFFSPLVVIARQGAAQVLAGNGLARMTGKNSGTLLMGPFLKASGEDRTWQQLPGSAAHAELTGTVFVKTTDPSSSNSGALFLAATSNVANGNTVVADDAGIDRTAPLMRKLISVQGALEPSTDDPFRAFISGSGEPLILVYESQVASLLMQKQDPGDMVVLYPDTTVNSAHTFVPLTEKARELGTLLATDPKLRELAVLRGFRPQEGVAEFAAATAPHTDYLNTGLTGIRQVGTPTVKILMALAQRAKGQGDTP
>NZ_CP029189.1|WP_150258956.1|4709345_4710533_-|toxic-anion-resistance-protein
MTLTPPEDTSFRLSPPEPVAPVRKEQAAGLVPLQDGVREEMARRAGEYVGSLAAIDSRSPEFAQRIGEIAGLGQADIRSAAQQSNRMLERAVRSLGPDGGGDAQARVAGSLVELRRTVEDLDPRDTPAKGARKLLAKLPGGNRFRDHVAKYASSQATLNKIVGSLRSGQDELRRDNAALHTERSRLWETMGKLQEYAVLTEALDGAVEQRVAEVEQADPGAADAMRADVLFPVRQKHQDLLTQLAVCAQGYLAMDVVRRSNDELIKGVDRAATTTVSALRIAVMLASALDNQRKVIEQVDALRGTTEELIRGNAQMLSTQSGEIQRIAADPAVGAETLRTAFAQIYKTLDAIDTFKVQATENMAATVESLAGELQTASAYLARTRTAGALEGGAL
>NZ_CP029189.1|WP_150262057.1|4707678_4709277_-|VWA-domain-containing-protein
MARTGFALVLAVLTAATACTSGEPAGPEETAYKEGTLRVLASSELADMEPVLEQARKATGVTVKLTWSGTLDAAEQVASGQADGKYDAIWLSSNDYLRLRPEAAGKLSSETPVMSSPVALGVKPEALARLGWKPAEVTWPAVHEAVVAGKLTYGMTDPVRSNSGFSALVSVASGLSGAQAALSDADVRAATPRLKEFFAGQKLTSGSSGWLVTAYGKRGDVDALVNYESVLLSMNRDAKGAGAPLTVVRPRDGVVTAHYPLTLLTSAPAGARDSGRALTEYLRGPEAQKAITEQTFRRPVAAGVVPAAGLDAEKRRELPFPGSRSVADGLLASYENELRRPSRTVYVLDTSGSMSEEDRIGRLKSALTELTGSGSSGTGQRFRDREEVTLLPFGSKVKGVDTHVVEPGNPGPALDAIRRDVRSLEPDGGTAVYGSLEAAYQQLGKGGTDAFTSIVLMTDGENTEGVGAKHFDSFYAALPEAQKRTPVFAVLFGDSDRKELTHITELTGGRLFDATGGTGSLAGAFEEIRGYQ
>NZ_CP029189.1|WP_150258955.1|4707080_4707692_-|hypothetical-protein
MATSRAGRVLEYLESKKNLAGSACGVAGLGLTLAGVAGAYWPLVVGGLYGAGALIAPPERTAPPPFDPREELGVLREDFGRLREYVAGVELPTGAAEALAALLELYGALLEPGWVADVLVTDPEAVHAVSRAVRQDVPESVDAYNRTRWWSRMTPGGESPERHLERQLGLLREEAQRVTAGLHEVEARRQQTHTTYLEERGRS
>NZ_CP029189.1|WP_150258954.1|4705134_4706964_+|phosphoenolpyruvate-carboxykinase-(GTP)
MARDNAAPTIPTTHQDLISWVDEIAALTQPDRVVWCDGSEAEYERLCEELVTKGTFKKLDETKRPNSYYAASDPSDVARVEDRTFICSEKEEDAGPTNHWKAPAEMKEIFAGGEGIFRGSMKGRTMYVVPFCMGPLGSELSAIGVEITDSAYVAVAMRTMTRMGKAVLDELGTDGFFVKAVHTLGAPLAEGQADVPWPCNTTKYISHFPETREIWSYGSGYGGNALLGKKCYALRIASVMARDEGWLAEHMLILKLTPPAGEGEAKYIAAAFPSACGKTNLAMLEPTIPGWTVETVGDDIAWMRFGEDGRLYAINPEAGFFGVAPGTGAHTNANAMKTMYANTVFTNVALTPDGSDVWWEGMTEEAPAQLIDWKGNAWTPESETPAAHPNARFAVPAAQCPTIAPEWEDPKGVPVSAILFGGRRASAVPLVTESFDWNHGVFIGSNIASEKTAAAEGKVGELRRDPFAMLPFCGYNMGDYMGHWVDVAKGKDQSKLPKIYYVNWFRKNDAGKFVWPGFGENSRVLKWIVGRLDGTAEGVDTPIGILPTKDALDLDGLDLPAEDLDFLLTVDKEVWRDEASLVPEHLNTYGDHTPKELWDQYHALVERLG
>NZ_CP029189.1|WP_150258962.1|4717270_4717747_+|macro-domain-containing-protein
MKPIRIIAGDATNPQAKGPKVIAHVCNDIGGWGKGFVLAVSKRWAEPEAAFRAWHRGRSGNDFGLGAVQLVRVKPDVWVANMIGQRGVRTGSGGPPIRYDAVERCLSALAGHAVELGASVHMPRIGCGLAGGKWSRVEPLITAALCAGDVEVTVYDHG
>NZ_CP029189.1|WP_150258963.1|4717779_4718139_-|hypothetical-protein
MGLILLLIALVLGLALAFVGLAMILTASAVMGVGTVAVSRKLPLWARITLLLTAAAAPAVTLASSLGSWAAWQLGASAPPFLATVAAGAAVFAFEAHKRRAPGTPARAWPVRHAPAAGR
>NZ_CP029189.1|WP_150258964.1|4718328_4718880_+|GNAT-family-N-acetyltransferase
MEYRYAAEADAPAMAELFAADHHDALTERRRAEHGSVRGRFDAGVLGRMAGARELLVADDGGRIVGLLALSAPAALADASPPVTGLLRAQEVLEWEGRPLAESRWLLYGPVVVGAAYRGRGVARALFTMALAAASERAEAVVALIEAGDAPSWKVHVDGFGMVPLGDFRADGRTYAVVAAPTC
>NZ_CP029189.1|WP_150258965.1|4718876_4719329_-|nitroreductase-family-deazaflavin-dependent-oxidoreductase
MHALDVDWDHPTDPRPGPRLDHVRAYVSTAGADGHLWHGVPTLLLTTLDRATGRTVRTPLIYGRDADRHIVLASAYGAREHPRWYRNLATHPEVRLQVGAAAFTARARTATPQEREVYWEMMTALWPPFEDDRAAARPREIPLVILEREA
>NZ_CP029189.1|WP_150258966.1|4719435_4720398_+|LysR-family-transcriptional-regulator
MDLELRHLKIVRAVADAGSLTRAATALGLAQPALSTQLKRIERALGGTLFLRGRDGVRATALGELVLERARVLLPAVCELQEDAQRFARQEAHGYRLGGTHGPLLGGLVDRLAREEPGVPVTTYTSWSEKEVAGGVADGRLDFAMVGVCGESAPPEPGRLAWMEVARDPVHVMLAEDHPLALAPRTEIELAELAAEAWTDVPGDGCFGDCFAAACVRAGFTPACVYETDTASCVHLVQVGRAVGLCRATFPVTPGVVTRPLAGTPLIWRHLLGWHPAARVAARAADVLAQARAAHAEAMGRSAGALRAAASRGAAPGSAA
>NZ_CP029189.1|WP_030034983.1|4720803_4720989_-|hypothetical-protein
MVSEPDEQPTRSDRLFTGGERPYDPEDLVMATGHDPTPERVEKARKLIEKEGPQVIERYLP
>NZ_CP029189.1|WP_150258967.1|4721178_4722540_+|S1-family-peptidase
MPKRHARAACTALAAVGLLLAGTGGAAADPGTAARSAAPSAAATLRTTDAPPELLAAMQRDLGLTPTQAKARLAHEAEAGATAARLADRLGAAFAGAWVDGADAGTLTVATTRAADTAAIRATGARAKLVTRTLADLDGAKAALDRAAGPTTPVRYVDPRANTLVVEETVAGAATRLLAATGTDAALVRVVRTADAPRPLYDLRGGDAYYMNGSGRCSVGFPVTKGAVNGFATAGHCGRAGTTTSGFNQVAQGSFQASVFPGNDMAWVAANAQWTATPYVKGSGGANAQVTGSVLQPVGASVCRSGSTTGWHCGTIQQHNTSVTYPEGTISGVTRTTVCAEPGDSGGSYLSGSQAQGVTSGGSGNCSSGGTTFFQPLNPILSAYGLTLKVVGGDPGPGPGPGEPEPGGTWKAGTVYAAGATVTHGGSAYRCLQGHQAQPGWEPPNVPALWQRV
>NZ_CP029189.1|WP_150258968.1|4722605_4723622_-|YdcF-family-protein
MVAFALAALLFLAFCISVRQDRRRFQNAVLLGLTFLSAFSALFLQVGKLPTWAAVTVVVLAFASPAFATVALGVFLVRNGMVMIRKEGFRPANLLSMLAGLVIFALIALLVLVGVVGSPLLGGIAGTLTVVAGYVSFVFFCFLGYAFLYGRIKVRGDVDHVVMLGSGLVGGDRVPPLLASRLRKGQQIYEAQLARSGRPPVLLVSGGKGSDEKVSEARAMADWLIAQGVPERHVVLEDRSTTTEENMLFSRDVMTAHDPAYRCVVVTNNFHAFRAAMLARKTGVNGQVLGSPTAKYYWPSATIREFVAVFWEHRIVNLSICALLTVLGALGTLAAVLV
>NZ_CP029189.1|WP_150258969.1|4723645_4725244_-|amidohydrolase-family-protein
MDLVIRGARVVDGTGGPSYTADVGVHEGRIAEIGGLPGGRLPGGGRRTLDAHGLVLAPGFVDMHAHSDLALLRDPDHSAKAAQGVTLEVLGQDGLSYAPVDDRTLGEVRAAIAGWNGPGDDVDFSWRTVGEYLDRLDSAHGGRGVAVNAAYLVPQGTVRAYAVGWDDRPATGAELDRMRRLVADGLAQGAVGLSSGLTYTPGMYATGAELTELCRVVARYGGYYCPHHRSYGHDALAAYAEMVALAREAGCALHLAHATMNFGENRGRAPELLALLDAALAGGADITLDSYPYTPGCTTLVALLPSWANEGGPEAVLARLRDDTQAERIRHALEVEGSDGCHGVPLDWSTIEISGTADPALGAYVGRRLDGWATARRLLLGDRLAPTVLQHVGDEGNVRAIMRHRVHTGGSDGILQGAKPHPRAYGTFPHYLGHYVRELGLLSLEECVAHLAGRPAARLRLPDRGLVRVGYRADLVLFDPDTVAAGSTYERPRVLPTGVPHVLIDGRSVIRDGHRTDVLAGRSVRRTAHDLR
>NZ_CP029189.1|WP_150258970.1|4725254_4726547_-|amino-acid-deaminase
MASDSDPVKDLADEPVDHRFKGLPPEAQTQGLTVGRLAAERRDLYTGGFTTPVLTLDADALEHNLAALGTYAARHSLAFAPHGKTCMAPQLFQRQLEHGAWGITVAMPHQARVCRAFGVRRIFLANELVDAPALRWVAGELAADPGFRFVCYVDSVRGVELMDAALHDQGVVIDVVLELGAGAEGRTGLRTDADCQAVADAVAASPVLRLAGVAGYEATMPGADADSVRAWLSRLTALAADLDKRGHFTGTGLDEVIVSAGGSEWFDAVAEVFAEIPQLSLPVLPLLRSGAYVSHDHGWYSGLTPFNRVPEEGGLVPAFRLWTQVVSRPTPGQAFVNAGKRDIAYDLGLPEVLTVRSARDGVERAATGIRVSKLSDQHAWIETDADATALDVGDWVSLGMAHPCTIFEKWPLIPVVEADGAVTDFVRTFF

Crispr_ID: NZ_CP029189_17

• CRISPR_ID: NZ_CP029189_17
• CRISPR_location: 4903965-4904062
• CRISPR_type: Orphan
• Repeat_type: NA
• Spacer_info: 1 spacers

Consensus repeat of NZ_CP029189_17

Consensus_repeat	Method
TGGGCGGCTCCGACGGGGCCGAG	CRISPRCasFinder

spacers of NZ_CP029189_17

>17.1|4903988|52|NZ_CP029189|CRISPRCasFinder
CCGGGTTCGGGTGGCGCCGTGGGAGCGGGTGCGGAGGCTGTTGCCGGTCTGC

CRISPR arrays and Neighbor proteins around NZ_CP029189_17

CRISPR arrays

The CRISPR arrays of NZ_CP029189_17

>merge|NZ_CP029189|17|4903965-4904062|CRISPRCasFinder
TGGGCGGCTCCGACGGGGCCGAGCCGGGTTCGGGTGGCGCCGTGGGAGCGGGTGCGGAGGCTGTTGCCGGTCTGCTGGGCGGTTCCGACGGGGCCGAG

>NZ_CP029189|17|16|4903965-4904062|CRISPRCasFinder
TGGGCGGCTCCGACGGGGCCGAG	CCGGGTTCGGGTGGCGCCGTGGGAGCGGGTGCGGAGGCTGTTGCCGGTCTGC
TGGGCGGTTCCGACGGGGCCGAG

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP029189.1|WP_150259120.1|4913135_4913396_-|mycoredoxin	unknown	unknown	gnl|CDD|131255
NZ_CP029189.1|WP_150259122.1|4915908_4916232_+|hypothetical-protein	unknown	unknown	unknown
NZ_CP029189.1|WP_150259109.1|4891581_4892724_+|hypothetical-protein	unknown	unknown	gnl|CDD|260127
NZ_CP029189.1|WP_150259108.1|4889833_4891453_+|DUF3492-domain-containing-protein	unknown	unknown	gnl|CDD|340841
NZ_CP029189.1|WP_150259125.1|4917210_4917417_+|hypothetical-protein	unknown	unknown	unknown
NZ_CP029189.1|WP_150259114.1|4897566_4898826_-|hypothetical-protein	unknown	unknown	gnl|CDD|373067
NZ_CP029189.1|WP_150259121.1|4913506_4915741_+|AAA-family-ATPase	unknown	unknown	gnl|CDD|223288
NZ_CP029189.1|WP_150259111.1|4893715_4894471_+|phage-tail-protein	unknown	unknown	gnl|CDD|371915
NZ_CP029189.1|WP_150259119.1|4912036_4912981_+|NAD(+)-diphosphatase	unknown	unknown	gnl|CDD|225373
NZ_CP029189.1|WP_150259116.1|4901935_4902400_+|cysteine-methyltransferase	unknown	unknown	gnl|CDD|119438
NZ_CP029189.1|WP_150259107.1|4887947_4889624_+|dipeptide-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl|CDD|224048
NZ_CP029189.1|WP_150259112.1|4894556_4895735_+|adenylyltransferase/sulfurtransferase-MoeZ	unknown	unknown	gnl|CDD|181156
NZ_CP029189.1|WP_150262078.1|4909416_4910553_+|PD-(D/E)XK-nuclease-family-protein	unknown	unknown	gnl|CDD|378929
NZ_CP029189.1|WP_150259124.1|4916780_4917110_+|hypothetical-protein	unknown	unknown	unknown
NZ_CP029189.1|WP_150259126.1|4917430_4918759_-|AarF/ABC1/UbiB-kinase-family-protein	unknown	unknown	gnl|CDD|270872
NZ_CP029189.1|WP_150259110.1|4892720_4893728_+|NAD-dependent-epimerase/dehydratase-family-protein	unknown	unknown	gnl|CDD|366597
NZ_CP029189.1|WP_150259113.1|4895879_4897475_-|alpha/beta-fold-hydrolase	unknown	unknown	gnl|CDD|312032
NZ_CP029189.1|WP_150259115.1|4899047_4901918_-|flippase-like-domain-containing-protein	unknown	unknown	gnl|CDD|377103
NZ_CP029189.1|WP_150259123.1|4916412_4916784_+|WhiB-family-transcriptional-regulator	unknown	unknown	gnl|CDD|376791
NZ_CP029189.1|WP_150259118.1|4910563_4911970_+|dipeptidase	unknown	unknown	gnl|CDD|349929

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NZ_CP029189.1|WP_150259120.1|4913135_4913396_-|mycoredoxin	gnl|CDD|131255	TIGR02200, conserved_hypothetical_protein, Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.	1.74765e-27
NZ_CP029189.1|WP_150259109.1|4891581_4892724_+|hypothetical-protein	gnl|CDD|260127	cd13964, PT_UbiA_1, UbiA family of prenyltransferases (PTases), Unknown subgroup. Many characterized members of the UbiA prenyltransferase family are aromatic prenyltransferases and play an important role in the biosynthesis of heme, chlorophyll, vitamin E, and vitamin K. They contain two copies of a motif similar to the active site DxxD motif of trans-prenyltransferases and are potentially related. Prenyltransferases (PTs) catalyze the regioselective transfer of prenyl moieties onto a wide variety of substrates and play an important role in many biosynthetic pathways. The function of this subgroup is unknown.	0.005171
NZ_CP029189.1|WP_150259108.1|4889833_4891453_+|DUF3492-domain-containing-protein	gnl|CDD|340841	cd03813, GT4-like, glycosyltransferase family 4 proteins. This family is most closely related to the GT4 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility. The members of this family are found mainly in bacteria, while some of them are also found in Archaea and eukaryotes.	3.0016e-147
NZ_CP029189.1|WP_150259114.1|4897566_4898826_-|hypothetical-protein	gnl|CDD|373067	pfam14435, SUKH-4, SUKH-4 immunity protein. This family belongs to the SUKH superfamily and functions as immunity proteins in bacterial toxin systems.	3.01834e-06
NZ_CP029189.1|WP_150259121.1|4913506_4915741_+|AAA-family-ATPase	gnl|CDD|223288	COG0210, UvrD, Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair].	8.58673e-108
NZ_CP029189.1|WP_150259111.1|4893715_4894471_+|phage-tail-protein	gnl|CDD|371915	pfam12138, Spherulin4, Spherulation-specific family 4. This protein is found in bacteria, archaea and eukaryotes. Proteins in this family are typically between 250 and 398 amino acids in length. There is a conserved NPG sequence motif and there are two completely conserved G residues that may be functionally important. Starvation will often induce spherulation - the production of spores - and this process may involve DNA-methylation. Changes in the methylation of spherulin4 are associated with the formation of spherules, but these changes are probably transient. Methylation of the gene accompanies its transcriptional activation, and spherulin4 mRNA is only detectable in late spherulating cultures and mature spherules. It is a spherulation-specific protein.	3.67904e-20
NZ_CP029189.1|WP_150259119.1|4912036_4912981_+|NAD(+)-diphosphatase	gnl|CDD|225373	COG2816, NPY1, NTP pyrophosphohydrolases containing a Zn-finger, probably nucleic-acid-binding [DNA replication, recombination, and repair].	5.78591e-83
NZ_CP029189.1|WP_150259116.1|4901935_4902400_+|cysteine-methyltransferase	gnl|CDD|119438	cd06445, ATase, The DNA repair protein O6-alkylguanine-DNA alkyltransferase (ATase; also known as AGT, AGAT and MGMT) reverses O6-alkylation DNA damage by transferring O6-alkyl adducts to an active site cysteine irreversibly, without inducing DNA strand breaks. ATases are specific for repair of guanines with O6-alkyl adducts, however human ATase is not limited to O6-methylguanine, repairing many other adducts at the O6-position of guanine as well. ATase is widely distributed among species. Most ATases have N- and C-terminal domains. The C-terminal domain contains the conserved active-site cysteine motif (PCHR), the O6-alkylguanine binding channel, and the helix-turn-helix (HTH) DNA-binding motif. The active site is located near the recognition helix of the HTH motif. While the C-terminal domain of ATase contains residues that are necessary for DNA binding and alkyl transfer, the function of the N-terminal domain is still unknown. Removal of the N-terminal domain abolishes the activity of the C-terminal domain, suggesting an important structural role for the N-terminal domain in orienting the C-terminal domain for proper catalysis. Some ATase C-terminal domain homologs are either single-domain proteins that lack an N-terminal domain, or have a tryptophan substituted in place of the acceptor cysteine (i.e. the motif PCHR is replaced by PWHR). ATase null mutant mice are viable, fertile, and have a normal lifespan.	2.18963e-16
NZ_CP029189.1|WP_150259107.1|4887947_4889624_+|dipeptide-ABC-transporter-ATP-binding-protein	gnl|CDD|224048	COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only].	0
NZ_CP029189.1|WP_150259112.1|4894556_4895735_+|adenylyltransferase/sulfurtransferase-MoeZ	gnl|CDD|181156	PRK07878, PRK07878, molybdopterin biosynthesis-like protein MoeZ; Validated.	0
NZ_CP029189.1|WP_150262078.1|4909416_4910553_+|PD-(D/E)XK-nuclease-family-protein	gnl|CDD|378929	pfam12705, PDDEXK_1, PD-(D/E)XK nuclease superfamily. Members of this family belong to the PD-(D/E)XK nuclease superfamily.	1.20946e-12
NZ_CP029189.1|WP_150259126.1|4917430_4918759_-|AarF/ABC1/UbiB-kinase-family-protein	gnl|CDD|270872	cd13970, ABC1_ADCK3, Activator of bc1 complex (ABC1) kinases, also called aarF domain containing kinase 3. This subfamily is composed of the atypical yeast protein kinase Abc1p, its human homolog ADCK3 (also called CABC1), and similar proteins. Abc1p (also called Coq8p) is required for the biosynthesis of Coenzyme Q (ubiquinone or Q), which is an essential lipid component in respiratory electron and proton transport. It is necessary for the formation of a multi-subunit Q-biosynthetic complex and may also function in the regulation of Q synthesis. Human ADCK3 is able to rescue defects in Q synthesis and the phosphorylation state of Coq proteins in yeast Abc1 (or Coq8) mutants. Mutations in ADCK3 cause progressive cerebellar ataxia and atrophy due to Q10 deficiency. In algae and higher plants, ABC1 kinases have proliferated to more than 15 subfamilies, most of which are located in plastids or mitochondria. Subfamily 13 (ABC1K13) of plant ABC1 kinases belongs in this subfamily with yeast Abc1p and human ADCK3. ABC1 kinases are not related to the ATP-binding cassette (ABC) membrane transporter family.	2.81479e-96
NZ_CP029189.1|WP_150259110.1|4892720_4893728_+|NAD-dependent-epimerase/dehydratase-family-protein	gnl|CDD|366597	pfam01370, Epimerase, NAD dependent epimerase/dehydratase family. This family of proteins utilize NAD as a cofactor. The proteins in this family use nucleotide-sugar substrates for a variety of chemical reactions.	2.07669e-40
NZ_CP029189.1|WP_150259113.1|4895879_4897475_-|alpha/beta-fold-hydrolase	gnl|CDD|312032	pfam08386, Abhydrolase_4, TAP-like protein. This is a family of putative bacterial peptidases and hydrolases that bear similarity to a tripeptidyl aminopeptidase isolated from Streptomyces lividans. A member of this family is thought to be involved in the C-terminal processing of propionicin F, a bacteriocidin characterized from Propionibacterium freudenreichii.	1.60309e-36
NZ_CP029189.1|WP_150259115.1|4899047_4901918_-|flippase-like-domain-containing-protein	gnl|CDD|377103	pfam03706, LPG_synthase_TM, Lysylphosphatidylglycerol synthase TM region. LPG_synthase_TM is the N-terminal region of this family of bacterial phosphatidylglycerol lysyltransferases. The function of the family is to add lysyl groups to membrane lipids, and this region is the transmembrane domain of 7xTMs. In order to counteract attack by membrane-damaging external cationic antimicrobial molecules - from host immune systems, bacteriocins, defencins, etc - bacteria modify their anionic membrane phosphatidylglycerol with positively-charged L-lysine; this results in repulsion of the foreign cationic peptides.	1.08861e-28
NZ_CP029189.1|WP_150259123.1|4916412_4916784_+|WhiB-family-transcriptional-regulator	gnl|CDD|376791	pfam02467, Whib, Transcription factor WhiB. WhiB is a putative transcription factor in Actinobacteria, required for differentiation and sporulation.	2.71053e-16
NZ_CP029189.1|WP_150259118.1|4910563_4911970_+|dipeptidase	gnl|CDD|349929	cd05680, M20_dipept_like, uncharacterized M20 dipeptidase. Peptidase M20 family, unknown dipeptidase-like subfamily (inferred by homology to be dipeptidases). M20 dipeptidases include a large variety of bacterial enzymes including cytosolic nonspecific dipeptidase (CNDP), Xaa-methyl-His dipeptidase (anserinase),and canosinase. These dipeptidases have been shown to act on a wide range of dipeptides, but not larger peptides. For example, anserinase mainly catalyzes the hydrolysis of N-alpha-acetylhistidine while carnosinase degrades beta-alanyl-L-histidine.	0

Protein sequences

>NZ_CP029189.1|WP_150259116.1|4901935_4902400_+|cysteine-methyltransferase
MVARTDGPAGHQGARRYGSETSAAARPTYCTMCRMSEELPAYAEHVLEVAERIPPGRVMTYGDVAEWLGEGGPRQVGRVMALYGGAVPWWRVVRADGLPLPGHEVRALEHYRTEGTPLRLTAGGEPRLDMRRARWDGSPGQDGGQDGTRDEAHT
>NZ_CP029189.1|WP_150259115.1|4899047_4901918_-|flippase-like-domain-containing-protein
MIRDQEETDVTTKEQGVSPPDGAATDDGARPDDGRAARPEPVPEPRPEPPRPDGRNGGAGARARAKAQPAAEAKATEAGAAGAGSAEAGGPHGHATTDADRVEVDEPLLAARVHRPSDLVRLLVGILGIAVLLAVAAFAHGTTVGLEEDISKGTGQAPALLIKVAALVSSIAVLLLPVAFAIERLIKRDGLRIADGVLAAVLAHGVTLATDLWVSQAAPETIQDALTRPAAGGTLTDPVHGYLAPVIAYMTAVGMTRRPHWRVALWVVLLLNAFAMLVNGYTTPFSIILTVLIGWSVAYGTLYAVGSPNVRPTGQHLLAGLRRVGFQPVSAMRAEMPEGPEPSEANDRGRRYHVTLEDGPPLDVTIVDREQQAHGFFYRVWRRLTLRGITTGRSLQSLRQALEQEALLAYAAIAAGANAPKLIATSELGPDAVMLVYEHLDVRPLDALADEEITDELIHHTWEQVRALQSRRIAHRRLTGDALVVDRSGNVILTDLRGGEIAAGDLVLRMDIAQLLTTIGLRVGAERAVASAVSVLGPDAVADCLPLLQPIALSRSTRATLRKLARERAERQREAVLESSRAAKAAREAESAASATPVSASAAADRKAEKKALEDALDGAREEDLLTQIRHQVLLIRPQAPVEPARLERIRPRTLVSFIAGAFGLYFLLTQLAHVDFATIIADAEWGWVGAALAFSALTYFAAAMSLLGFVPERVSFLRTVIAQVAGSFVKLVAPAAVGGVALNTRFLQRAGVRPGLAVASVGASQLFGLASHIVLLLSFGYLTGTEKTPEMTPSRAVIAGLLTVAVLVLVVTAVPFLRKFVVTRVRALFAGVVPRMLDVLQRPKKLLTGIGGMLLLTGCFVMCLDASIRAFGGGEAISYASIAVVFLAGNALGSAAPTPGGMGAVETTLTLGLIAAGLEKEVAFSAVLLFRLMTFWLPVLPGWISFNFLTRKEAI
>NZ_CP029189.1|WP_150259114.1|4897566_4898826_-|hypothetical-protein
MSEDLDSRCPFDDPAAVLRADRAALRGGSAGEGGVGREVFTQAEAVFGRAGVGRAEFASWLHFAATVLGHHDYAARVAEAEPGLPWRTVWAWWRPVGAYVAEPNLSGDHTAEVYDLDGGAALKVWALWCEDTWFDLDTGRRLPAPADGEAVRRDGDDPDGARLFDPDEDGRLLHCPGTWEEPVPLGGGRYLYVEDRGVVVVEENAAALAGWPRGGADTGSWESAEDAPWFRPGTRGSGPLTAAGLARTFGEARVTRVPGEELPDALEHRATREFLSEVGLPRHWAAGVSSFEAAPELLRPLTSTAPEAGDEDLLHLGTFDFGYTDPGLVGVHRVTGEVRMYQESVIPLARDVAAFTGLLESVRRYMGACWSPYPAEDGIGAFHEAVRALDPGAQADGSPSAETWEHLFAAITELSVYGY
>NZ_CP029189.1|WP_150259113.1|4895879_4897475_-|alpha/beta-fold-hydrolase
MPTHAWRVTAAATLAAGLLATAACSGDGDGKKTTADGTPEVKPLKWGDCEAPTAAQGGGQAPPKDWQCATLDVPLDYAKPEGETIPIALIRAKARDQKNRLGSLVFNFGGPGGSGISTLPGAAKEYEALRARYDLVSFDPRGVGGSDPVLCQDDKQLDQYFAEDSSPETPEQEKAFVENIRKYQEACKKNSAALLPHVGTENAARDLDRIRQALGDEKLNYFGISYGTELGGVYAHLFPKNVGRAVFDAVVDPTKTAEQSALGQAKGFQLALGNFAQDCVDRGDECRLQGSTPQEIEAGIIKLQKALAAKPIPGIGERMLTENQATNGIAQALYSKELWPLLEQGLDEAEGGQGQLLMALSDALNGRDQQGRYSNIGAANTAVNCVDDKERYTLEQTKAKLAEFRAASPVFGDLLGWAMLSCTGWPVPGTWETPDVSAPGSDPILVIGNTGDPATPYEGARKMVERLGPGVGVELTYKGEGHGAYNSGDPCVQKAVDTYLLDGRAPASGTVCTAAADPTAPTGVPEQPTPA
>NZ_CP029189.1|WP_150259112.1|4894556_4895735_+|adenylyltransferase/sulfurtransferase-MoeZ
MSLPPLVEPAAELTVDEVRRYSRHLIIPDVGMDGQKRLKNAKVLAVGAGGLGSPALMYLAAAGVGTLGIVEFDEVDESNLQRQIIHSQADIGRSKAESARDSVLGINPYVNVVLHEERLEAENVMEIFSQYDLIVDGTDNFATRYLVNDACVLLNKPYVWGSIYRFDGQASVFWSEHGPCYRCLYPEPPPPGMVPSCAEGGVLGVLCASIGSIQVTEAIKVLTGVGEPLVGRLMIYDALEMQYRQVKVRKDPDCAVCGPNATVTELIDYEAFCGVVSEEAQEAAAGSTITPKQLKEWIDTDEPIEIIDVREVNEYEIVSIPGAKLIPKGEFLMGTALQDLPQDKRIVLHCKTGVRSAEVLAVLKSAGFADAVHVGGGVIGWVHQIEPEKPVY
>NZ_CP029189.1|WP_150259111.1|4893715_4894471_+|phage-tail-protein
MPHLTTPPGAMTAAATEAGRLGLGIPGYAHPLLAPVEWAELTRPGTPLHWAVLNVADGPGGRPDPHCTEAAARLRRAGGMILGHLAMRDGSRSFGELVSDAHRFRDWYGVGGFYLAGTPADKAELASVSRVVDSLRGLGEDLRIVLGHGTHPYEGYAEAADQLVTFSGAWSDYRWSQVAEWTADHPAERFCHLVHGVPRAHLEEAMRIARWQGAGTIWFTDRLGTRGSDPWASMPAYWDEIVSRIGTGVLE
>NZ_CP029189.1|WP_150259110.1|4892720_4893728_+|NAD-dependent-epimerase/dehydratase-family-protein
MRVLLIGANGYLGRYVADRLLADPAVQLTALGRGDDADVRFDLATGSPGALTRFLDAVHPGVVINCAGATRGGARELTRHNTVAVATICESLRRSGCGARLVQLGCAAEYGPSQPGSSTAEDAVPRPGGPYGVSKLAATELVLGSGLDAVVLRIFSPVGPGTPAGSPLGRLAEAMRRAMQAGDGELKLSGLGVQRDFVDVRDVARAVHAASLSAAQGVVNIGTGRAVRLRDAAAVLARVAGYGGALHELDVPHGPQQAHGHPGRPAGLAGIGSPRSEATAEQMAATAPQPYPYPDGCGAWQQADVRTARDRLGWRPRINLEESLADIWMEAACRI
>NZ_CP029189.1|WP_150259109.1|4891581_4892724_+|hypothetical-protein
MPTSRVRSGAAPLPGALPTDPRASNAGEAEAAQRGSGIAIGGAGTGARPVRRRGGGDPVKALLHRHRELCERAVDPLEIAAGLEAHGITDRTAARFRHRDVFSLAEELYARSPHEEVTAAAPTLGPAGPAAFRGFGYALLPAALACAAAAAGQAWAGAAAVAAVAAALVLPGRPAGGRFPYVAHVLAAAVAGWAVYRHGTALAVGLALAVVPGHLAAVAFAAGARARLDASRGLEDFADRARPLLLAAVALFTGAAAAAAVLAGTPLPVAVPLALLLFLTRLLLRHGAHRVPVGAALALALVPVPEAALAAAPRPDSSCTPYSPWPAPPRMRGPDVRRTSPDLRSRRRGALPVPRPTHPSIRPQGETDMTGQPTNQGVTR
>NZ_CP029189.1|WP_150259108.1|4889833_4891453_+|DUF3492-domain-containing-protein
MRIGLLTEGGYPYATGEARLWCDRLVRGLPQHEFEIYALSRSAEQERARVPLPEHVTRVRTAPLWAPADDGRTYSRRERRRFADCFKELVRGICAGEPEPFAAGLYGLAGLAREQGGMYAALRSESAVRALESACRAPGAARTVQTAQVADLLEFVDELEVMLRPLSLDWYGEDTRGGGGLGGTDICHAAAGGVAALPGLLAKRFFGVPLLVTEYGVQLRAHYLSQLDTRGERETRPAVRALLTAFQLRLATEIYARADFLTPGNAHARRWQERCGASRERLRTVYPGMEADRFTTVGEAPDRGDPDTLVWVGRIEPAKDLIALLHAFAEVRRAEPGTRLRIFATAEAPGYLADCRSLAAQLFPDEAADSVTAGENPVTFEEIGGPDAPTTADAYGSGRVVVLSSVIEGFPVTLAEAMLCGRATVSTDVGAVCEVIGGTGLVVPPRNPRALAEACLSLLQDPERAQRLGAAARARALELFTVEQNVAAFEEIYLRLLAKGSVRPGGEIPFARPPEARVPGHWTSPTWAPAPEPSSEAAV
>NZ_CP029189.1|WP_150259107.1|4887947_4889624_+|dipeptide-ABC-transporter-ATP-binding-protein
MTHALVEVTGLVVDFPVGGSGERLRAVDGVSFTLEAGRALGIVGESGSGKSTVAAALLGLHRGTGARLGGTVRVGGTDVATASPAELRRLRGGTAAMVFQDPLSSLDPYQAIGDQIAEVHRIHADVSRRAARARAVEVLDRVGIPDAARRSRARPHEFSGGMRQRALIAMALACEPRLLIADEPTTALDVTVQAQILDLLHGLREERGLGLLLVTHDVGVAAESVDEVLVMRGGSAVERGPVASVLAAPAEPYTRALLAAVPRLDAPRHSRGSAPDPAPRTPAGLGESPAGQEPADVPVVEAVSLRREFGRGRRKVAAVAGVSLAVHAGETLGIVGESGSGKSTLGRMLVGLLEPGSGQVRRDGVPVTGIASGVQMVFQDPVASLNPRRSIGESIADPLRAAGERDEAAVRARVQELLLRVGLEAGHHDRYPHEFSGGQRQRVGIARALAPRPRLIVCDEPVSALDVTTQAQVTALLAELQRELGIALVFIAHDLAVVRQVSDRVAVMRAGEIVEEGPVDEVYDRPAHPYTRQLLAAVPALDPALAAGRRRTRQEVLA
>NZ_CP029189.1|WP_150262078.1|4909416_4910553_+|PD-(D/E)XK-nuclease-family-protein
MRPGRGIPSAPHAADATGAAFDDPWAGEAWAEVLPGDGAATRAPHGVPGSAPVPGRGGAGDETLPPGPADPPYDDDLWAAAAPAPGAAARRVPAEGQPYGDDPWPEDDLWPEADLWAGEAGSAAGAAVPMSVPGLPAGGEDARAIASWDRDLDALEGELRRARAAVRDVELPSALSASQLLRLAADEQGFVRDLARPMPRPPQPAARQGTRFHAWVESRFDELPLPFLDVLDPVTDLPGAGSDQEIADEADLDSLKAAFERSPYADRPPHRMEAPVQLTLAGRVVRGRIDAVYRNEDGSYEIVDWKTGRTTEADPLQLAVYRVAWAETTNTPLDQVSAAFLHVRSGRVIRPRNLPDRARLERILQGEPDPDGDHQADS
>NZ_CP029189.1|WP_150259118.1|4910563_4911970_+|dipeptidase
MSDTPPDSVVRTYIDTHRAAFLDDLAEWLRIPSVSAQPEHAVDVRRSAEWLAAKLKETGFPVAEVWETPGAPAVFAHWPSEDPHAPTVLVYGHHDVQPAALADGWHTDPFEPVVRDGRMYGRGAADDKGQVFFHTLGVRAHLAATGAAAPAVHLKLLIEGEEESGSPNFRALVEARAAELASDVVIVSDTGMWSETTPTVCTGMRGVADCEIDFHGPDQDIHSGAFGGAVPNPATVAARLVAALHDADGRVTIPGFYDGIAELTDAERALIAELPFDESEWLRTAKSHAAAGEAGYSTLERVWARPTAEVNGIGGGYQGPGGKTIVPASAHLKLSFRLVSGQDPYEVEAAVRDWVAAAIPDGIRHSITFGAPTRPCLTPLDHPALQSVVRAMGRAFGEKIRFTREGGSGPAADLQDVLDAPVLFLGISVPSDGWHAPNEKVELDLLLKGVETTAYLWGDLAAHHRTTA
>NZ_CP029189.1|WP_150259119.1|4912036_4912981_+|NAD(+)-diphosphatase
MSTHTERPLTERPLSLAAPSGIDRAAHHRLDEAWLAAAWSHPTTRVFVVSGGQVLIDDTPDGGTGIVMTAAFEAPVTETHRYFLGTDEDGVRYFALQKDALPGRMDQSARPAGLREAGLLLSPRDAGLMVHAVALENWQRMHRFCSRCGERTVVAAAGHIRRCPGCGAEHYPRTDPAVIMLVTDEHDRALLGRQVHWPEGRFSTLAGFVEPGESIEQSVVREVWEEAGVRVGEVEYVASQPWPFPYSLMLGFTARATTSEITVDGEEIEEARWFSREELRAAFASGEVLPPSGISIAARLVELWYGEPLPKAAA
>NZ_CP029189.1|WP_150259120.1|4913135_4913396_-|mycoredoxin
MQDTGTVTMYSTTWCGYCRRLKTQLDREGIAYNEINIELDPESAAFVEKANGGNQTVPTVLVKSAGGSESVMTNPSLAQVKQALAV
>NZ_CP029189.1|WP_150259121.1|4913506_4915741_+|AAA-family-ATPase
MRAACGQISRPAHRTWQHGGVTSATHSSPFPGGQASADSADAVLLGLDPEQREVATTLRGPVCVLAGAGTGKTRAITHRIAYGVRSGQLMPASVLAVTFTNRAAGEMRGRLRTLGAGGVQARTFHSAALRQLQYFWPKAVGGEVPRLLERKIQFVAEAGARCRIRLDRNELRDVTGEIEWAKVTQTVPADYPVAALKAGREAPRDLAEIAQIYGTYEQLKRDRGMIDFEDVLLLTVGILQDRHDIAEQIRGQYQHFVVDEYQDVSPLQQRLLDLWLGERDSLCVVGDASQTIYSFTGATPDHLLNFRTRYPQATVVKLVRDYRSTPQVVHLANGLLNQAKGRAAEHRLELISQRETGPDPVHTEYADEPAEAEGVAHRIRDLIAAGVPAGEIAVLYRINAQSEVYEQALADAGVPYQLRGAERFFERQEVQRAILALRGAARSGGNDPLLDDVVELGSQVRAVLSSTGWAAEPPAGSGAVRDQWESLAALVRLAEDFARGRPGATLADLTIELDERKAAQHAPTVQGVTLASLHAAKGLEWDSVFLVGLTDGMMPITYAKTDEQVEEERRLLYVGVTRARIHLSLSWAVSRAPGGRASRRPSRFLNGLRPGSAARGAGAGSGVERGVRKRVRRGPALCRVCGRTLTEAGELKLMRCEDCPSDMDEGLYERLRDWRAVQSKEQGLPAYCVFTDKTLMAIAEAAPSEAGELSMISGVGGRKLDRYGAEVLAICAGQEVGAGHPDDA
>NZ_CP029189.1|WP_150259122.1|4915908_4916232_+|hypothetical-protein
MTSFMTFTEMTDRSVDASCLLGSVSTLGTGVSAISADRPALLAILPVSERNERPTKAPVAVLAAEAQAHGAYGFAAAAGAGSQKKQTKQQHHLMWAFRGLEPWSDPA
>NZ_CP029189.1|WP_150259123.1|4916412_4916784_+|WhiB-family-transcriptional-regulator
MQLEAHAPSVPQTQLISPPAVPEDHALTPLTALTALDDAIENLGVPVPCRTFDPEVFFAESPADVEYAKSLCRTCPLVEACLAGAVERREPWGVWGGELFVQGVVVARKRPRGRPRKNPVVAA
>NZ_CP029189.1|WP_150259124.1|4916780_4917110_+|hypothetical-protein
MTAIGTIDRPLTHDPLKQALMTSYTTSEQPHGAAHADFITTGAITSRQNRTREMQLIPEALARAHMDERMREVDAERHAVRLVAARRMQRRAERVSMRARRALAMAVMQ
>NZ_CP029189.1|WP_150259125.1|4917210_4917417_+|hypothetical-protein
MDQPTPRPGPSGSEAQPVVCTGCGAKSPGEIPPTWTCSVENGTRQYFCVDCARANLRAIEGRLDSSWW
>NZ_CP029189.1|WP_150259126.1|4917430_4918759_-|AarF/ABC1/UbiB-kinase-family-protein
MSDLPRKAVTRTVKLAALPLGMAGRATWGLGKRIGGKSAEIVARELQQRTAEQLFRTLGELKGGAMKFGQALSVFESALPEEVAGPYRAALTKLQEAAPPLPAATVHQVLTDRLGADWRDLFEEFEDKPAAAASIGQVHRAVWHDGRQVAVKVQYPGAGEALLSDLKQLSRFAGLLGPLIPGMEIKPLIKELRDRVAEELDYELEAEAQRTHSDAFVDDPDVVVPDVVHQGDQVLVTEWMEGTPLSEVIADGTQEERDRAGQLLAGFLFSGPARTGLLHADPHPGNFRLIPGADGRTRLGVLDFGTVDRLPGGWPKPIGRSLRMTLDGDAEGVYGHLRAEGFVRESVELDPGAVLDYLKPIIEPAEAEEFTFTRPWLRGQAARIADPRSPAHQLGRQINLPPSYLLIHRVTLSTIGVLCQLGATVRLRDELDTWLPGFASAE

Crispr_ID: NZ_CP029189_18

• CRISPR_ID: NZ_CP029189_18
• CRISPR_location: 6159958-6160059
• CRISPR_type: Orphan
• Repeat_type: NA
• Spacer_info: 1 spacers

Consensus repeat of NZ_CP029189_18

Consensus_repeat	Method
CCGGCGTTTGAGACGCGGGGTCC	CRISPRCasFinder

spacers of NZ_CP029189_18

>18.1|6159981|56|NZ_CP029189|CRISPRCasFinder
AGGCCAAATCCAGCCTCGCCGACGGGTCCGGCTCCGGGTGCTCTGTTTCAGCCTCG

CRISPR arrays and Neighbor proteins around NZ_CP029189_18

CRISPR arrays

The CRISPR arrays of NZ_CP029189_18

>merge|NZ_CP029189|18|6159958-6160059|CRISPRCasFinder
CCGGCGTTTGAGACGCGGGGTCCAGGCCAAATCCAGCCTCGCCGACGGGTCCGGCTCCGGGTGCTCTGTTTCAGCCTCGCCGGCGTTTGAGGCGCGGGGTCC

>NZ_CP029189|18|17|6159958-6160059|CRISPRCasFinder
CCGGCGTTTGAGACGCGGGGTCC	AGGCCAAATCCAGCCTCGCCGACGGGTCCGGCTCCGGGTGCTCTGTTTCAGCCTCG
CCGGCGTTTGAGGCGCGGGGTCC

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP029189.1|WP_150260241.1|6172609_6173212_+|hypothetical-protein	unknown	unknown	unknown
NZ_CP029189.1|WP_150260239.1|6161090_6164195_-|DNRLRE-domain-containing-protein	unknown	unknown	unknown
NZ_CP029189.1|WP_150260234.1|6155430_6156141_+|ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl|CDD|213222
NZ_CP029189.1|WP_150260237.1|6158745_6159864_+|allantoicase	unknown	unknown	gnl|CDD|237319
NZ_CP029189.1|WP_150260231.1|6152229_6152865_-|response-regulator	unknown	unknown	gnl|CDD|225107
NZ_CP029189.1|WP_150260235.1|6156268_6157072_-|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl|CDD|224332
NZ_CP029189.1|WP_150260233.1|6154345_6155434_+|FtsX-like-permease-family-protein	unknown	unknown	gnl|CDD|223650
NZ_CP029189.1|WP_150260246.1|6176253_6177267_-|dehydrogenase	unknown	unknown	gnl|CDD|275173
NZ_CP029189.1|WP_150260238.1|6160180_6160921_-|SDR-family-oxidoreductase	unknown	unknown	gnl|CDD|235500
NZ_CP029189.1|WP_150260236.1|6157399_6158743_+|allantoinase-AllB	unknown	unknown	gnl|CDD|238640
NZ_CP029189.1|WP_150260232.1|6152861_6154211_-|sensor-histidine-kinase	unknown	unknown	gnl|CDD|226951
NZ_CP029189.1|WP_150260230.1|6151641_6152118_-|hypothetical-protein	unknown	unknown	unknown
NZ_CP029189.1|WP_150260228.1|6149277_6149895_-|NTP-transferase-domain-containing-protein	unknown	unknown	gnl|CDD|133025
NZ_CP029189.1|WP_150260243.1|6174312_6174765_-|hypothetical-protein	unknown	unknown	unknown
NZ_CP029189.1|WP_150260244.1|6174769_6175141_-|hypothetical-protein	unknown	unknown	unknown
NZ_CP029189.1|WP_150260229.1|6150133_6151621_+|aminotransferase-class-I/II-fold-pyridoxal-phosphate-dependent-enzyme	unknown	unknown	gnl|CDD|224089
NZ_CP029189.1|WP_150260240.1|6164843_6172142_+|hypothetical-protein	unknown	unknown	gnl|CDD|369438
NZ_CP029189.1|WP_150260247.1|6177462_6178473_+|substrate-binding-domain-containing-protein	unknown	unknown	gnl|CDD|380535
NZ_CP029189.1|WP_150260245.1|6175251_6176190_+|EamA-family-transporter	unknown	unknown	gnl|CDD|273359
NZ_CP029189.1|WP_150260242.1|6173648_6174266_+|dihydrofolate-reductase	unknown	unknown	gnl|CDD|223340

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NZ_CP029189.1|WP_150260245.1|6175251_6176190_+|EamA-family-transporter	gnl|CDD|273359	TIGR00950, Uncharacterized_inner_membrane_transporter_YicL, Carboxylate/Amino Acid/Amine Transporter. [Transport and binding proteins, Amino acids, peptides and amines].	7.85572e-08
NZ_CP029189.1|WP_150260234.1|6155430_6156141_+|ATP-binding-cassette-domain-containing-protein	gnl|CDD|213222	cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein. This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.	1.15375e-88
NZ_CP029189.1|WP_150260237.1|6158745_6159864_+|allantoicase	gnl|CDD|237319	PRK13257, PRK13257, allantoicase; Provisional.	7.29839e-174
NZ_CP029189.1|WP_150260231.1|6152229_6152865_-|response-regulator	gnl|CDD|225107	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription].	7.98256e-71
NZ_CP029189.1|WP_150260235.1|6156268_6157072_-|helix-turn-helix-domain-containing-protein	gnl|CDD|224332	COG1414, IclR, Transcriptional regulator [Transcription].	4.99253e-72
NZ_CP029189.1|WP_150260233.1|6154345_6155434_+|FtsX-like-permease-family-protein	gnl|CDD|223650	COG0577, SalY, ABC-type antimicrobial peptide transport system, permease component [Defense mechanisms].	2.39236e-12
NZ_CP029189.1|WP_150260246.1|6176253_6177267_-|dehydrogenase	gnl|CDD|275173	TIGR04380, hypothetical_protein_HOLDEFILI_04020, inositol 2-dehydrogenase. All members of the seed alignment for this model are known or predicted inositol 2-dehydrogenase sequences co-clustered with other enzymes for catabolism of myo-inositol or closely related compounds. Inositol 2-dehydrogenase catalyzes the first step in inositol catabolism. Members of this family may vary somewhat in their ranges of acceptable substrates and some may act on analogs to myo-inositol rather than myo-inositol per se. [Energy metabolism, Sugars].	1.06704e-99
NZ_CP029189.1|WP_150260238.1|6160180_6160921_-|SDR-family-oxidoreductase	gnl|CDD|235500	PRK05557, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Validated.	4.97656e-87
NZ_CP029189.1|WP_150260236.1|6157399_6158743_+|allantoinase-AllB	gnl|CDD|238640	cd01315, L-HYD_ALN, L-Hydantoinases (L-HYDs) and Allantoinase (ALN); L-Hydantoinases are a member of the dihydropyrimidinase family, which catalyzes the reversible hydrolytic ring opening of dihydropyrimidines and hydantoins (five-membered cyclic diamides used in biotechnology). But L-HYDs differ by having an L-enantio specificity and by lacking activity on possible natural substrates such as dihydropyrimidines. Allantoinase catalyzes the hydrolytic cleavage of the five-member ring of allantoin (5-ureidohydantoin) to form allantoic acid.	0
NZ_CP029189.1|WP_150260232.1|6152861_6154211_-|sensor-histidine-kinase	gnl|CDD|226951	COG4585, COG4585, Signal transduction histidine kinase [Signal transduction mechanisms].	2.20952e-50
NZ_CP029189.1|WP_150260228.1|6149277_6149895_-|NTP-transferase-domain-containing-protein	gnl|CDD|133025	cd04182, GT_2_like_f, GT_2_like_f is a subfamily of the glycosyltransferase family 2 (GT-2) with unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.	1.03983e-56
NZ_CP029189.1|WP_150260229.1|6150133_6151621_+|aminotransferase-class-I/II-fold-pyridoxal-phosphate-dependent-enzyme	gnl|CDD|224089	COG1167, ARO8, Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism].	3.62123e-89
NZ_CP029189.1|WP_150260240.1|6164843_6172142_+|hypothetical-protein	gnl|CDD|369438	pfam07591, PT-HINT, Pretoxin HINT domain. A member of the HINT superfamily of proteases that is usually found N-terminal to the toxin module in polymorphic toxin systems. The domain is predicted to function in releasing the toxin domain by autoproteolysis.	4.80194e-18
NZ_CP029189.1|WP_150260247.1|6177462_6178473_+|substrate-binding-domain-containing-protein	gnl|CDD|380535	cd06312, PBP1_ABC_sugar_binding-like, periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type 1 periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.	1.30412e-98
NZ_CP029189.1|WP_150260242.1|6173648_6174266_+|dihydrofolate-reductase	gnl|CDD|223340	COG0262, FolA, Dihydrofolate reductase [Coenzyme metabolism].	9.93499e-19

Protein sequences

>NZ_CP029189.1|WP_150260237.1|6158745_6159864_+|allantoicase
MAIPSFTGNANPYGGGDPYADYRTADFPFTQYANLAARELGAGVIAANDEFFAQRENLLISEAAHFDPEDFGHKGKVMDGWETRRRRGVSATQPWPTAEDHDWALVRLGAPGVIRGIVVDTAHFRGNMPQAVSVEATNWAGALAPTPEELQGDDVKWTTIVARTPVGGHAANGFEVDVEQRFTHLRVNQHPDGGIARLRVYGEVLPDPKWLDALGSFDVAALENGGSVQDASNRFYSPPTNTINPGRSRKMDDGWETARRRDNGNDWIRYQLVAESEIRAVEIDTAYLKGNSAGWASLSVKTGEEGEWTEFLPRTRLQPDTNHRFVLDAPAVGTHVRIDIFPDGGFSRLRLFGSLTESGAAALTARHQELGG
>NZ_CP029189.1|WP_150260236.1|6157399_6158743_+|allantoinase-AllB
MADVAVELVLRSTRVITPEGTRAASVAVAGGKIAAVLPYEAEVPAGARLEDFGDDVLLPGLVDTHVHVNDPGRTEWEGFWTATRAAAAGGITTILDMPLNSLPPTTTVDNLRVKQEVARAKAHVDVGFWGGALPDNVKDLAPLHDAGVYGFKCFLSPSGVDEFPELDQEQLATSLAEITGFGGLLIVHAEDPHHLDAAPVVPGPKYADFLASRPRDAENTAIGNLIAQAKRLNARVHVLHLSSSDALPLIAAAKAEGVQITVESCPHYLTLTAEEVPDGASEFKCCPPIREAANQDLLWDALADGTIDCIVSDHSPSTADLKTSDFSTAWGGISSLQLGLPAIWTEARRRGRTLEDVVRWMSAAPAALAGLAQKGAIEAGRDADFAVLAPEETFTVDPAELHHRNQVTAYAGKTLHGVVKSTWLRGTQIADHGTPTEPTGLLLERQN
>NZ_CP029189.1|WP_150260235.1|6156268_6157072_-|helix-turn-helix-domain-containing-protein
MPTSSASTTDASSKTPAASGGVQSLERAFDLLERMADAGGEVGLSELSAASGLPLPTIHRLMRTLVACGYVRQQPNRRYSLGPRLIRLGESASRLLGTWARPYLARLVEETGETANMALLDGDEIVYVAQVPSKHSMRMFTEVGRRVLPHSTGVGKALLAHTPADEVRALLARTGMPAATEKTITTPEGFLDALEQVRKVGYAVDDNEQEIGVRCLAVSVPNSPTAAAISISGPAGRVTEAVAESFVPILQGVAAELSVALANQSPS
>NZ_CP029189.1|WP_150260234.1|6155430_6156141_+|ATP-binding-cassette-domain-containing-protein
MTLLVHDVTLTYPDGEHRLTALDGVSLEVPAGTLTAVIGPSGSGKSSLLAVAATLVTPDSGRVVVAGRDTTELGPAEKSALRREKIGIVFQQPNLLASLTAAEQLQVMAHLSGRPARAVRGRALELLDAVGLAEKADKRPHQLSGGQRQRINIARALMNEPAVLLVDEPTSALDHERGAAVLDLLVTLTRERSTATVLVTHDHAHLERMDRTATMTDGRLTPSPATAADPAAVPRA
>NZ_CP029189.1|WP_150260233.1|6154345_6155434_+|FtsX-like-permease-family-protein
MFVAWRDLRFAKGRFALMGSVVLLITLLVGLLSGLTSGLARENISAVTGLPATHLAFAAPAGDQKVSFTNSQVAEPAWLAWREQPGVKAAEPLGIRTTNAVSGERTAAVSAFGVASAGGLAPRNAGLTQGQAVLTEKAAKELGGLTAGAKLKIGPLELTVAGVSGTAAYSHTPVVWMDLNDWQRVGNPGTSLDTLATVVAVSAGDGVDLGAADRAAATRAQTVDEALGAIGSYQAENGSLQLMRGFLFAISALVIGAFFTVWTIQRSGDIAVLKALGASTPYLLKDALGQAVVMLALGTGLGTALAAGFGALISGGPVPFVLDAATVLVPAAVMILLGALGAALSIRRITAVDPLTALGSAR
>NZ_CP029189.1|WP_150260232.1|6152861_6154211_-|sensor-histidine-kinase
MTAPVSSAPPAPTAPPARPATRALTPVSKVLRLCLHALLFGLLALAATRAVTDSAPRAGWVIAACAVLAAVYAGGVRAPAVHSSPRAGALWLAGLGAAWAALLVVCPDGLWIAFPLYFLELHLLRLRWGVTAVAATACAAIAGFLAHSSAVTPGAFLGPLLGGAVAVATVLGYQALYRESERRRELIEELITTRAELAAAERGAGILAERERLAREIHDTLAQGLSSIQLLLRAAERALPEGAPALAHIGQAREAAQENLAEARRFVRALTPPDLERGSLAAALERLCTGVPGPRVRFSLVGSPRVLPTPYEVALLRIAQSALANVVRHARAGRAEITLTFMDASVTLDIVDDGHGFDPASASPGPAGSGDGGFGLPAMRSRAETLGGLFTVESDPGQGTAVAVTLPLPLENLENAETLGHVAHGAHVAHVGQVENTVHAQRPDAVEAL
>NZ_CP029189.1|WP_150260231.1|6152229_6152865_-|response-regulator
MTIRLLLADDHPVVRAGLRAVLDTEPDFAVVAEAATAERAVELAAREPVDVVLMDLQFGPGPGMHGSEATALITARPGAPRVLVLTTYDTDADILAAVEAGASGYLLKDAPPEELAAAVRTASAGQSALAPAVALRLMDRMRTPAEALTKRELEVLQLVADGLSNQQISKELFLSQATVKSHLVHIYAKLGVDSRTSAVATAAVRRLIRTP
>NZ_CP029189.1|WP_150260230.1|6151641_6152118_-|hypothetical-protein
MMPVTSTPARRAARRPAAGPPPAAVRAAFALWVTAVAAGAFETALMVGRDPAEGFGVGLAVRLVVFTTALLVAVRMRRGAGWARITLAIGLGVLGTASLVVEPLGYLLDGGSLADALARADALERVFLVSRTVHLAAVLTAVVLMFRPAANRYFRAAA
>NZ_CP029189.1|WP_150260229.1|6150133_6151621_+|aminotransferase-class-I/II-fold-pyridoxal-phosphate-dependent-enzyme
MATGRVVRTADRTIGSRQLAALLPADVLARPGYRALADAVRTLILDGRVALHVRLPAERELAEAVGASRATVTGAYDLLRESGYVRSRRGSGTWTELPDGHRPVGAHALLGAGGYSADGEPGVDLAIAAMGAPQGCLADAFAWAAPRLPRLARDPGYHPFGLPDLRSAVADRFTRRGLPTRPEQILVTAGAQQAFSLVVGLLCGPGDRVVTENPTYANALDALRHARLRTGSIAVSDAGWDMEIAESTLRQTVPRLAYVIPDFHNPTGVLMPPEQRLRLLAATRATGTWLVVDETIADIALDVPAPAPLASLAPRGGADHVITIGSLSKTHWGGLRVGWIRATAKMITELTAVRVSADMTGSVLDQLVALPLLDGLDRELPARLAQLRIQREALVQALRRHTPEWSWQVPPGGLSLWVDLGEPVSSALAERAAAAGVHIGRGARFGVDPGTFEHRLRIPYTLPADRLDEGIHRLATAFHDGIPLPSSVDRPYWVA
>NZ_CP029189.1|WP_150260228.1|6149277_6149895_-|NTP-transferase-domain-containing-protein
MPANHPTHSGPPLIAGLLLAAGGGRRLGGRPKALLPYRGRPLVENAVRVLREAGCGPVHVVLGASAAEVRERADLAGCVVVDNPDWAQGMGSSLRAGLASLAGTGAGAALVSLVDQPGIGAAAVARVLAAYRSPASLVAAAYGGERGHPVLFGADRWADIAATATGDKGARVHLARHAGELMLVECSDIAEAFDIDTPPDLVRLL
>NZ_CP029189.1|WP_150260238.1|6160180_6160921_-|SDR-family-oxidoreductase
MDSNNGTVVLVTGGSRGIGAAVALRLAEDGADVAITYVSDAEAAAEVVGKVEALGRRAVALRADAGNAAEVANAVGETVRRFGRLDVLVNNAGVGLLGPLAELTPADVERVLAVNVRGVFHTTQAAAAHLGSGGRIITIGSCMTQRVPGPGGTLYAMSKSALIGFNRALARELGERGITVNLVHPGPVDTDMNPADGPYAASQAALTALGRFGAAREVAAVVAFLAGPEASYVTGAEFAVDGGHAA
>NZ_CP029189.1|WP_150260239.1|6161090_6164195_-|DNRLRE-domain-containing-protein
MLLAAAVAVPVGVHVTGDGKPQSRSGEDTPIAEPQARRMAEESGKEVEVTAARSANTTTWAQPDGSFRKQIFSAAFRAQVGGGWKPIDTSLERVEGGFAARAVNGRVFFSGGSQEQAGGGERAARGANRVALRQDAPGEVWTELVRLNTGGHDMSVSWPGVLPEPVVDGPRALYEDVRPGIDLVMTAQDGGYSHLLVVKDKQAAADPLLGQLRYRLKSPDMTFHLDDASDALSVRDAKGEEIAGSPTPMMWDSSGKVATTDDRPAWKPGGVAKQHPTLALSGLAGAEGARLKPVAAALADDALSLTPDNALLNAPETVYPVFIDPSFKGHKHAWTLLYKTEKDSSFYNGQNYNASGTNEARVGYESSSGGTSRSIFNFDFGSQLQGSEIISARVRALQTYSWSCDSKQMLIFSTPYITSSSTWRNTDNAAYWGRVVASEYAGYGYNSSCPDNWIAPDIKGLVSEAATAGWGALSLGFAAPNESDSYFWKKFIANGETAPYIEVVYNSRPDTPIAANMQTFPGGPCLTSWPGTGIGKTNVTFQVKGTDRDGNLDRVQVEVWSAAGGPPVFDQWFPPNSDGVVTAEVPWNTFTDGQTYYWLSRATDKDGAWSGSGPHESGSGAWCTFTVSHTVPPNPAVSSAAFPPQGDDFNDWSTEPASTPGQSFTIKGNGAKAEDIREFQWSLNRPSFDQKAVPAAGSDTASVPLQVDTSGPNVLYVRTVGKSGNVSAQSTYGFLVRPRPGQDKPGDVTGDGNPDLLAIDKDGNLRTYAGDSVGDTDAYIPGAVENGKPVAPGYWKDPATGQSALIGHATDWYPGDGITDLIARMPDGKLYIYPGTGTGQFDVGRRMQMQLPLSAPDPSVFRQIVVTEDVDGDGLGDMFALDADGFWAFSGYTGSSFASYKKMATGWAGRDIVGVRDVSGDKVPDLIFRDNTNANRGLALRKGKPGVNGGADLASLESKANAEGGEDYTYATTGWGRAAYPKVLGTPDANGDGIPDIWAVGNNENQWIFQGGTSTVGAPMGRDEDGWNSFLTIG
>NZ_CP029189.1|WP_150260240.1|6164843_6172142_+|hypothetical-protein
MPGLQKDLKAKPDQAAMDALGRWAGDPPRPLEEYTPTAVAPPAEASATIPLAPVPTADFVQVGSLPVSIGKVPGTGTAPTGTWSAAVEGRAKTEAAGVDGAMIKITPPVDAVNPVDVALDYSKFQDLYGTEWASRLKLRQYPACFLDHPELPECSVSVDVPSSNDAGGKKVIATLDPAATPVQGMQTMSTGGAAGAMAVVASDGAAGAGGSYKATSLSPSGSWTAGGSGGGFSWTYPLTVPRAPAGPTPSIAFSYSSQAVDGRTSVTNGQASWIGDGWDYNPGFVERRYRSCSDDLKATSSGKPNNDNATDKKKGDLCWAGDNVVLSLNGSTTELVHDAVSGAWVPATDDGSKVELKTGSGNGAKDGEYWVVTTRDGMRYHYGRHSVGTHGDGSSPKTVTDSVFTVPVFGNHPGEPCYQSAYANSSCAQAWRWNLDYVEDIHGNAMIIDWVKEENRYARNEKVNEKDRAKVGYIRGGYPTRILYGLRADNLAGAPAGRVEFGVEQRCFEERNVSCADSLFGSKNGIGWYDTPASLNCKMDAAVCESFSPTFWSRVRLDRVTTYGQRTEGSTALTKVDQWALKQSLPKHRTDTSPPLWLESVTRTAYGSKDSTIGVSLPPVSFKANAVDMPNRVLKADANGKPDAAPDFDRLRVETILTETGGEIVVDYSAPCAKGTSVPDLAKNTTRCFPVYWSADTGLDPDKVPPVELFNKYVVDGVVEKDRVAQRPDVKTSYTYEDAAWAKEDDEFTKPDRRTYSQWRGYASVTTTTGETANAGKATATEQGQTRKRYFRGLSTDTAKVTVKDSSGTDDLGEDLRQYQGQVAETITYTKAGGSVESRELTWPRSMETARRKRTDTSDLIAYQTGVARTDDIQSVSGGKARMERTLNTYEGKEAYGLPKTTQTDVLENKGTGWTTVKQSCTKPKYVHNPANNLIGLQSEVITTTGDCAGGGVEAGTRLSATRTSFDAVNAFGAAPTKGLPYQVDSTDAAGTGWTTSGRTEYDALGRAVKTYDAAGNPSSVTYSPATGPAFSTTATNALGHTVTTKVDPARGSVLEATDANGRKVTTVYDELGRSIEVRTPSQKATDPAAYTFEYQIAELRTPAVISRARRDNGTYSTSIAIYDGMLRPRQSKTEGPGGAVLITDTLHSANGTVSQVNNGYLAEDRLDTKLYVPKSVTEIPNSTQTAYDGLGRAVRVTSLEKGEARQSALTQYGGDWTLTRSGMSPTGSAPLPGSRAAKTWTDALGRTSEIEHYTATDLSTSSRTGYTYDVRGKLVKVTDTAGNNWTYTHDARGRMTSSEDPDTGKSTFTYNNLDQQVSATNVDNVTQYTSYDVLGRKTALRDDSETADPIATWTYDTLPGGKGQPVASTRKWGAGSYKTEVTGYDSEYRPTGSRITVPDLPTTKGLAGSYAYSTTYTPTGKVQSTTLPATIGGLAAEKLITRYNADGMVQTMSGLSWYTAETVYSPYGEILRTASGDAPNRVWTTNTYDPHTGRVASATSHKETRDATSGSNLLSSLSYTYDSVGNPTAITDTYPGTTPQSPALVDRQCYTYDAMGQLVRAWTGKTEGCPTGPAGPARTEVGSGTPGDAYWQDYQFDALGNRTKLTDRDPTNSALDDETTYTYGVEITGGALPNPKKQPHALTKVNKTTRTPGSSVDSLSTYTYSAAGNTKTRTIDGDTQTLNWDRRSKLLSATSPGIGSVAVTGLSGKCLDVQDGNTTDGTPVQLLSCNESKPQQWRITGDTVQALGKCLTSENGKAVLKACKPGEASQKFTYRETDKALVTGTNQCLTVPNGSDAEGNDLHTTTCAGPAVTAAQQWSFGNLTGYLYDASGNRVVKETGSARTLYLGETEITVDKAGKAMDAVRYYSSPGAPTTVRRTNGKSTGHTLSHLLSDHHNTATISVDQKAGQPVTRRKSDPYGNPRGAQPSSWPGDRTFLGTGTDDNTTGLTHIGAREYEASTGRFITVDPVIDITDPLQMNGYTYANGNPISNLDPDGLKYFEGDSDGGFQAEASKVVEVAQRRIDQRAARESNYRLCSRDRECRGSSNRGGVTTLTAKKKPSTWTNIWTGAVRGYAGMADIAGLGPLAPVASFFGVSVRDQANRTFKQFGVESDENAIESILAEIFAPLPPMATGATAVRAVGPAVARRAEGFLARLFAKCDSFVAGTKVQLADGTSKPIEQLATGDEVRATDPETGESGERPVTATIFTEDDKKYTDVSIQTDGGVQSITTTDHHPFWSESDQVWKNAGDLKPGENLRTDDGASVAVGAIHTYEASNETYNLTVAGLHTYYVLAGATPVLVHNCNGSMDFVHGTSSTHADNIEVNGLSSEAARSNSSGGRGGRKGSLFTYQVKDVDDTDALSAAATFGGTRTLTGDRPAILIFRICACEYNRLLAEGHIKTQVTDQASGRVEHVFGSDAMPFLKQVYRRNF
>NZ_CP029189.1|WP_150260241.1|6172609_6173212_+|hypothetical-protein
MLKGEGVTVVDAEILERAMEDCGLRFLGFRHGTGIPPYVAGMVTSCSADEGRRDRTAALEDPDRVSRANVDWFELATEFGLLSVDRQFLLSISVPHPDSVDDSDVEGVWGLVELMDDWDIMGAGCAVGITGSPYGCPAFVMSALDGSVFVQGTVWQDTIGTAVLPNPHRVQSLRDVARLNVGKSYRSSAENEDTLAWLAR
>NZ_CP029189.1|WP_150260242.1|6173648_6174266_+|dihydrofolate-reductase
MGKLTLTTFVTLDGVMQAPGGPEEDPSGGFAYGGWVAPFADEGMGEFITEVFGRAGAFLLGRRTYEIFAAYWPAHDDPADPVAGKLNRLHKYVASTTLDEAAWGPATVLDGEHLQGEIVRVKDALDGELQVHGSGQLAQWLLARDLVDEINLLVFPVVLGAGQRLFPTGGLPTAYELVNSRTTSAGTALQTYRPTGRASFGTVGA
>NZ_CP029189.1|WP_150260243.1|6174312_6174765_-|hypothetical-protein
MAEVWDTERLIAGGFRRVYAEFEWYDGPRAGLADVDGRPHYFQGHDYDHADECDEYLVWPASEAAVVLEREQWAIFVRWNQRSEAGEAGPESHPGHGGVDARYDELTPLLAPHRQPPADARRLIGELGFDDGDRYRADGLDYWFRWHPAR
>NZ_CP029189.1|WP_150260244.1|6174769_6175141_-|hypothetical-protein
MADLYALDLAFDLLDSTPDDVLAQVRRELTSPDGLLSARGPAWRVGGMLVGEFAPAVRGGWALTARQEVHEEQLPEMEDLLLLLAPHIRPPGPVGRLRFYEHESPDLLVLREGRVVQLALDRR
>NZ_CP029189.1|WP_150260245.1|6175251_6176190_+|EamA-family-transporter
MSRWRTALTVISPSALEAPRRAWLADLPVLAVAVVWGGSYLAAKGITTAHTVIAVLVLRFALVLPVLVVAGWARLRALRPAQLRGAGLLGLVLGGIFLLETYGVVHTSATNAGLIISLTMIFTPLAEAAVRKQAPSAGFLGAAAVSVAGVVLLTQGAGFSAPSAGDLLILGAALARTLHVLLMARIEAVQDADSLSLTTVQLGAAVLVFALLAAVPGTGATPWAAAADFGPAQWAGLAFLSVFCTLFAFFVQMWAVRRTSPSRVSLLLGTEPLWAAVAGIAVGGEELGAPGYAGALLVLVGTAWGRSAVTTG
>NZ_CP029189.1|WP_150260246.1|6176253_6177267_-|dehydrogenase
MRIGLIGTGRIGSFHAAVLARHPAAGSLLLADADPARAARLADRLGATAAPSVEQVFTWGVDAVVVASATEAHADLVVRAVRGGLPVFCEKPLAPDLNRTLAALREVRAAGGLLQVGFMRRFDAGYGTARELVRSGTLGRLHTVRTMTADPAPPEAAYLATSGGLYRDCLVHDFDMVRWVTGREVAEVYAAGSDAGPALFRETGDIDTAAAVLTLDDGTLVTATGTRCNGAGYDVRMELAGERDQVSVGLDDRTPIASTEPHGPPPASKPWTGFLERFAPAYEAELAAFVQLVRGEGANPCDGLEALAAFRIAEACELSRRERRRVRLEELPDLPAL
>NZ_CP029189.1|WP_150260247.1|6177462_6178473_+|substrate-binding-domain-containing-protein
MARVRTGVRVVGAVLAAVLGASLAGCSSTGGKRAEERAKAAEAGRPAVSTPRWTFAMVTHAGDGDTFWDIVQKGAKEAAAKDNINFVYAHDDQAQQQAQFVQNAIDQKVDGIVVSLAKPEALKDVLAKAVKAGIPVITVNSGSAQSAEYGALTHIGQDEVIAGEAVGTELDKRGKKRAVCVLHEQGNVGHEQRCAGAKKTFSGTMENLYVEGTNMPSVQAAIQAQLQADPSIDAIVTLGAPFAPTAVKAKDAAGSKAEVDTFDLNASVARDLKSGALGFAVDQQPYLQGYEAIDLLWLYRYNANVLGGGRPVLTGPQIVTAAEAAKLEEYIKRGSR

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NZ_CP029189_5	5.1|1713851|19|NZ_CP029189|CRT	1713851-1713869	19	NZ_CP029189.1	1713506-1713524	0	1.0
NZ_CP029189_5	5.2|1713890|22|NZ_CP029189|CRT	1713890-1713911	22	NZ_CP029189.1	1713545-1713566	0	1.0
NZ_CP029189_5	5.4|1713980|22|NZ_CP029189|CRT	1713980-1714001	22	NZ_CP029189.1	1713290-1713311	0	1.0
NZ_CP029189_5	5.4|1713980|22|NZ_CP029189|CRT	1713980-1714001	22	NZ_CP029189.1	1713635-1713656	0	1.0
NZ_CP029189_5	5.7|1714109|22|NZ_CP029189|CRT	1714109-1714130	22	NZ_CP029189.1	1713545-1713566	0	1.0
NZ_CP029189_5	5.8|1714151|28|NZ_CP029189|CRT	1714151-1714178	28	NZ_CP029189.1	1713149-1713176	0	1.0
NZ_CP029189_5	5.8|1714151|28|NZ_CP029189|CRT	1714151-1714178	28	NZ_CP029189.1	1713677-1713704	0	1.0
NZ_CP029189_5	5.1|1713851|19|NZ_CP029189|CRT	1713851-1713869	19	NZ_CP029189.1	1713251-1713269	1	0.947
NZ_CP029189_5	5.1|1713851|19|NZ_CP029189|CRT	1713851-1713869	19	NZ_CP029189.1	1713290-1713308	1	0.947
NZ_CP029189_5	5.1|1713851|19|NZ_CP029189|CRT	1713851-1713869	19	NZ_CP029189.1	1713635-1713653	1	0.947
NZ_CP029189_5	5.3|1713932|28|NZ_CP029189|CRT	1713932-1713959	28	NZ_CP029189.1	1713332-1713359	1	0.964
NZ_CP029189_5	5.6|1714061|28|NZ_CP029189|CRT	1714061-1714088	28	NZ_CP029189.1	1713332-1713359	1	0.964
NZ_CP029189_5	5.1|1713851|19|NZ_CP029189|CRT	1713851-1713869	19	NZ_CP029189.1	1713434-1713452	2	0.895
NZ_CP029189_5	5.1|1713851|19|NZ_CP029189|CRT	1713851-1713869	19	NZ_CP029189.1	1713779-1713797	2	0.895
NZ_CP029189_5	5.1|1713851|19|NZ_CP029189|CRT	1713851-1713869	19	NZ_CP029189.1	853969-853987	2	0.895
NZ_CP029189_5	5.2|1713890|22|NZ_CP029189|CRT	1713890-1713911	22	NZ_CP029189.1	1713107-1713128	2	0.909
NZ_CP029189_5	5.2|1713890|22|NZ_CP029189|CRT	1713890-1713911	22	NZ_CP029189.1	1713197-1713218	2	0.909
NZ_CP029189_5	5.4|1713980|22|NZ_CP029189|CRT	1713980-1714001	22	NZ_CP029189.1	1713380-1713401	2	0.909
NZ_CP029189_5	5.4|1713980|22|NZ_CP029189|CRT	1713980-1714001	22	NZ_CP029189.1	1713725-1713746	2	0.909
NZ_CP029189_5	5.7|1714109|22|NZ_CP029189|CRT	1714109-1714130	22	NZ_CP029189.1	1713107-1713128	2	0.909
NZ_CP029189_5	5.7|1714109|22|NZ_CP029189|CRT	1714109-1714130	22	NZ_CP029189.1	1713197-1713218	2	0.909
NZ_CP029189_5	5.8|1714151|28|NZ_CP029189|CRT	1714151-1714178	28	NZ_CP029189.1	1713332-1713359	2	0.929
NZ_CP029189_5	5.8|1714151|28|NZ_CP029189|CRT	1714151-1714178	28	NZ_CP029189.1	1713587-1713614	2	0.929
NZ_CP029189_7	7.2|2147167|33|NZ_CP029189|CRISPRCasFinder	2147167-2147199	33	NZ_CP029189.1	2147207-2147239	2	0.939

1. spacer 5.1|1713851|19|NZ_CP029189|CRT matches to position: 1713506-1713524, mismatch: 0, identity: 1.0

acgggggtacgagggacgg	CRISPR spacer
acgggggtacgagggacgg	Protospacer
*******************

2. spacer 5.2|1713890|22|NZ_CP029189|CRT matches to position: 1713545-1713566, mismatch: 0, identity: 1.0

gcgcgggtacgacggacggtcg	CRISPR spacer
gcgcgggtacgacggacggtcg	Protospacer
**********************

3. spacer 5.4|1713980|22|NZ_CP029189|CRT matches to position: 1713290-1713311, mismatch: 0, identity: 1.0

acgggggtacgacggacggtcg	CRISPR spacer
acgggggtacgacggacggtcg	Protospacer
**********************

4. spacer 5.4|1713980|22|NZ_CP029189|CRT matches to position: 1713635-1713656, mismatch: 0, identity: 1.0

acgggggtacgacggacggtcg	CRISPR spacer
acgggggtacgacggacggtcg	Protospacer
**********************

5. spacer 5.7|1714109|22|NZ_CP029189|CRT matches to position: 1713545-1713566, mismatch: 0, identity: 1.0

gcgcgggtacgacggacggtcg	CRISPR spacer
gcgcgggtacgacggacggtcg	Protospacer
**********************

6. spacer 5.8|1714151|28|NZ_CP029189|CRT matches to position: 1713149-1713176, mismatch: 0, identity: 1.0

gaaaccgccgccaccaccagagggacgg	CRISPR spacer
gaaaccgccgccaccaccagagggacgg	Protospacer
****************************

7. spacer 5.8|1714151|28|NZ_CP029189|CRT matches to position: 1713677-1713704, mismatch: 0, identity: 1.0

gaaaccgccgccaccaccagagggacgg	CRISPR spacer
gaaaccgccgccaccaccagagggacgg	Protospacer
****************************

8. spacer 5.1|1713851|19|NZ_CP029189|CRT matches to position: 1713251-1713269, mismatch: 1, identity: 0.947

acgggggtacgagggacgg	CRISPR spacer
acgcgggtacgagggacgg	Protospacer
*** ***************

9. spacer 5.1|1713851|19|NZ_CP029189|CRT matches to position: 1713290-1713308, mismatch: 1, identity: 0.947

acgggggtacgagggacgg	CRISPR spacer
acgggggtacgacggacgg	Protospacer
************ ******

10. spacer 5.1|1713851|19|NZ_CP029189|CRT matches to position: 1713635-1713653, mismatch: 1, identity: 0.947

acgggggtacgagggacgg	CRISPR spacer
acgggggtacgacggacgg	Protospacer
************ ******

11. spacer 5.3|1713932|28|NZ_CP029189|CRT matches to position: 1713332-1713359, mismatch: 1, identity: 0.964

gaaaccgccaccaccaccggaaggacgg	CRISPR spacer
gaaaccgccgccaccaccggaaggacgg	Protospacer
*********.******************

12. spacer 5.6|1714061|28|NZ_CP029189|CRT matches to position: 1713332-1713359, mismatch: 1, identity: 0.964

gaaaccaccgccaccaccggaaggacgg	CRISPR spacer
gaaaccgccgccaccaccggaaggacgg	Protospacer
******.*********************

13. spacer 5.1|1713851|19|NZ_CP029189|CRT matches to position: 1713434-1713452, mismatch: 2, identity: 0.895

acgggggtacgagggacgg	CRISPR spacer
acgcgggtaggagggacgg	Protospacer
*** ***** *********

14. spacer 5.1|1713851|19|NZ_CP029189|CRT matches to position: 1713779-1713797, mismatch: 2, identity: 0.895

acgggggtacgagggacgg	CRISPR spacer
acgcgggtaggagggacgg	Protospacer
*** ***** *********

15. spacer 5.1|1713851|19|NZ_CP029189|CRT matches to position: 853969-853987, mismatch: 2, identity: 0.895

acgggggtacgagggacgg	CRISPR spacer
acgggggtacggggtacgg	Protospacer
***********.** ****

16. spacer 5.2|1713890|22|NZ_CP029189|CRT matches to position: 1713107-1713128, mismatch: 2, identity: 0.909

gcgcgggtacgacggacggtcg	CRISPR spacer
gcgggggtaggacggacggtcg	Protospacer
*** ***** ************

17. spacer 5.2|1713890|22|NZ_CP029189|CRT matches to position: 1713197-1713218, mismatch: 2, identity: 0.909

gcgcgggtacgacggacggtcg	CRISPR spacer
gcgcgggtaggacgggcggtcg	Protospacer
********* *****.******

18. spacer 5.4|1713980|22|NZ_CP029189|CRT matches to position: 1713380-1713401, mismatch: 2, identity: 0.909

acgggggtacgacggacggtcg	CRISPR spacer
acgggggtaggacgggcggtcg	Protospacer
********* *****.******

19. spacer 5.4|1713980|22|NZ_CP029189|CRT matches to position: 1713725-1713746, mismatch: 2, identity: 0.909

acgggggtacgacggacggtcg	CRISPR spacer
acgggggtaggacgggcggtcg	Protospacer
********* *****.******

20. spacer 5.7|1714109|22|NZ_CP029189|CRT matches to position: 1713107-1713128, mismatch: 2, identity: 0.909

gcgcgggtacgacggacggtcg	CRISPR spacer
gcgggggtaggacggacggtcg	Protospacer
*** ***** ************

21. spacer 5.7|1714109|22|NZ_CP029189|CRT matches to position: 1713197-1713218, mismatch: 2, identity: 0.909

gcgcgggtacgacggacggtcg	CRISPR spacer
gcgcgggtaggacgggcggtcg	Protospacer
********* *****.******

22. spacer 5.8|1714151|28|NZ_CP029189|CRT matches to position: 1713332-1713359, mismatch: 2, identity: 0.929

gaaaccgccgccaccaccagagggacgg	CRISPR spacer
gaaaccgccgccaccaccggaaggacgg	Protospacer
******************.**.******

23. spacer 5.8|1714151|28|NZ_CP029189|CRT matches to position: 1713587-1713614, mismatch: 2, identity: 0.929

gaaaccgccgccaccaccagagggacgg	CRISPR spacer
gaaaccgccaccaccagcagagggacgg	Protospacer
*********.****** ***********

24. spacer 7.2|2147167|33|NZ_CP029189|CRISPRCasFinder matches to position: 2147207-2147239, mismatch: 2, identity: 0.939

acatccagcccgggtccggccaccccctcctcc	CRISPR spacer
acatccagcccgggtccggccacccacgcctcc	Protospacer
************************* * *****

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP029189_5	5.6|1714061|28|NZ_CP029189|CRT	1714061-1714088	28	MK864264	Gordonia phage VanDeWege, complete genome	9049-9076	4	0.857
NZ_CP029189_5	5.6|1714061|28|NZ_CP029189|CRT	1714061-1714088	28	MH479910	Gordonia phage Danyall, complete genome	8757-8784	4	0.857
NZ_CP029189_5	5.6|1714061|28|NZ_CP029189|CRT	1714061-1714088	28	MH479917	Gordonia phage KimmyK, complete genome	8885-8912	4	0.857
NZ_CP029189_5	5.6|1714061|28|NZ_CP029189|CRT	1714061-1714088	28	KX557286	Gordonia phage Twister6, complete genome	8668-8695	4	0.857
NZ_CP029189_5	5.6|1714061|28|NZ_CP029189|CRT	1714061-1714088	28	MK864267	Gordonia phage Valary, complete genome	9121-9148	4	0.857
NZ_CP029189_5	5.6|1714061|28|NZ_CP029189|CRT	1714061-1714088	28	MK967381	Gordonia phage RogerDodger, complete genome	9121-9148	4	0.857
NZ_CP029189_5	5.6|1714061|28|NZ_CP029189|CRT	1714061-1714088	28	MK864265	Gordonia phage Barb, complete genome	8885-8912	4	0.857
NZ_CP029189_5	5.6|1714061|28|NZ_CP029189|CRT	1714061-1714088	28	MT939492	Xanthomonas phage Xoo-sp14, complete genome	207723-207750	4	0.857
NZ_CP029189_4	4.1|1613706|27|NZ_CP029189|CRISPRCasFinder	1613706-1613732	27	NZ_CP026517	Deinococcus sp. NW-56 plasmid unnamed1, complete sequence	189638-189664	5	0.815
NZ_CP029189_5	5.3|1713932|28|NZ_CP029189|CRT	1713932-1713959	28	AP021851	Deinococcus grandis ATCC 43672 plasmid: pDEGR-2 DNA, complete genome	343422-343449	5	0.821
NZ_CP029189_5	5.3|1713932|28|NZ_CP029189|CRT	1713932-1713959	28	NC_015951	Streptomyces violaceusniger Tu 4113 plasmid pSTRVI01, complete sequence	22094-22121	5	0.821
NZ_CP029189_5	5.6|1714061|28|NZ_CP029189|CRT	1714061-1714088	28	NC_023591	Mycobacterium phage Adler, complete genome	58223-58250	5	0.821
NZ_CP029189_5	5.6|1714061|28|NZ_CP029189|CRT	1714061-1714088	28	KF981876	UNVERIFIED: Mycobacterium phage ADLER F1725, complete genome	58221-58248	5	0.821
NZ_CP029189_5	5.6|1714061|28|NZ_CP029189|CRT	1714061-1714088	28	NC_021361	Pseudomonas fluorescens A506 plasmid pA506, complete sequence	26561-26588	5	0.821
NZ_CP029189_5	5.6|1714061|28|NZ_CP029189|CRT	1714061-1714088	28	MK814761	Gordonia phage SmokingBunny, complete genome	8730-8757	5	0.821
NZ_CP029189_5	5.6|1714061|28|NZ_CP029189|CRT	1714061-1714088	28	MT310872	Gordonia phage Evamon, complete genome	8732-8759	5	0.821
NZ_CP029189_5	5.6|1714061|28|NZ_CP029189|CRT	1714061-1714088	28	MN010760	Gordonia phage Nubi, complete genome	8752-8779	5	0.821
NZ_CP029189_5	5.6|1714061|28|NZ_CP029189|CRT	1714061-1714088	28	NC_008010	Deinococcus geothermalis DSM 11300 plasmid pDGEO01, complete sequence	253696-253723	5	0.821
NZ_CP029189_5	5.3|1713932|28|NZ_CP029189|CRT	1713932-1713959	28	NZ_CP007796	Azospirillum brasilense strain Az39 plasmid AbAZ39_p3, complete sequence	111224-111251	6	0.786
NZ_CP029189_5	5.3|1713932|28|NZ_CP029189|CRT	1713932-1713959	28	NZ_CP032325	Azospirillum brasilense strain MTCC4035 plasmid p4, complete sequence	535414-535441	6	0.786
NZ_CP029189_5	5.3|1713932|28|NZ_CP029189|CRT	1713932-1713959	28	NZ_CP024582	Roseomonas sp. FDAARGOS_362 plasmid unnamed1, complete sequence	148506-148533	6	0.786
NZ_CP029189_5	5.3|1713932|28|NZ_CP029189|CRT	1713932-1713959	28	MN284907	Gordonia phage Fireball, complete genome	8855-8882	6	0.786
NZ_CP029189_5	5.3|1713932|28|NZ_CP029189|CRT	1713932-1713959	28	NC_030913	Gordonia phage Wizard, complete genome	8855-8882	6	0.786
NZ_CP029189_5	5.6|1714061|28|NZ_CP029189|CRT	1714061-1714088	28	NZ_CP024582	Roseomonas sp. FDAARGOS_362 plasmid unnamed1, complete sequence	148506-148533	6	0.786
NZ_CP029189_5	5.6|1714061|28|NZ_CP029189|CRT	1714061-1714088	28	GU071095	Synechococcus phage S-SM2, complete genome	30172-30199	6	0.786
NZ_CP029189_5	5.8|1714151|28|NZ_CP029189|CRT	1714151-1714178	28	NC_017957	Tistrella mobilis KA081020-065 plasmid pTM1, complete sequence	81733-81760	6	0.786
NZ_CP029189_5	5.8|1714151|28|NZ_CP029189|CRT	1714151-1714178	28	NZ_CP024314	Rhizobium sp. NXC24 plasmid pRspNXC24c, complete sequence	1096711-1096738	6	0.786
NZ_CP029189_5	5.3|1713932|28|NZ_CP029189|CRT	1713932-1713959	28	NZ_CP029834	Azospirillum ramasamyi strain M2T2B2 plasmid unnamed4, complete sequence	356374-356401	7	0.75
NZ_CP029189_5	5.3|1713932|28|NZ_CP029189|CRT	1713932-1713959	28	NZ_LN907828	Erwinia gerundensis isolate E_g_EM595 plasmid pEM01, complete sequence	146392-146419	7	0.75
NZ_CP029189_5	5.3|1713932|28|NZ_CP029189|CRT	1713932-1713959	28	NC_016624	Azospirillum lipoferum 4B plasmid AZO_p5, complete sequence	468766-468793	7	0.75
NZ_CP029189_5	5.6|1714061|28|NZ_CP029189|CRT	1714061-1714088	28	NZ_LR594663	Variovorax sp. RA8 plasmid 2	320439-320466	7	0.75
NZ_CP029189_5	5.6|1714061|28|NZ_CP029189|CRT	1714061-1714088	28	NZ_LR594663	Variovorax sp. RA8 plasmid 2	320460-320487	7	0.75
NZ_CP029189_5	5.6|1714061|28|NZ_CP029189|CRT	1714061-1714088	28	NZ_LR594663	Variovorax sp. RA8 plasmid 2	320481-320508	7	0.75
NZ_CP029189_5	5.6|1714061|28|NZ_CP029189|CRT	1714061-1714088	28	NZ_LR594663	Variovorax sp. RA8 plasmid 2	320502-320529	7	0.75
NZ_CP029189_5	5.6|1714061|28|NZ_CP029189|CRT	1714061-1714088	28	NZ_LR594663	Variovorax sp. RA8 plasmid 2	320523-320550	7	0.75
NZ_CP029189_5	5.8|1714151|28|NZ_CP029189|CRT	1714151-1714178	28	NZ_CP012940	Ralstonia solanacearum strain UW163 plasmid unnamed, complete sequence	214766-214793	7	0.75
NZ_CP029189_5	5.8|1714151|28|NZ_CP029189|CRT	1714151-1714178	28	NZ_CP012944	Ralstonia solanacearum strain IBSBF1503 plasmid unnamed, complete sequence	126662-126689	7	0.75
NZ_CP029189_5	5.8|1714151|28|NZ_CP029189|CRT	1714151-1714178	28	NC_020276	Mycobacterium intracellulare subsp. yongonense 05-1390 plasmid pMyong2, complete sequence	3755-3782	7	0.75
NZ_CP029189_5	5.8|1714151|28|NZ_CP029189|CRT	1714151-1714178	28	CP047139	Ralstonia solanacearum strain CFBP 8695 plasmid unnamed, complete sequence	348720-348747	7	0.75
NZ_CP029189_5	5.8|1714151|28|NZ_CP029189|CRT	1714151-1714178	28	NZ_CP051295	Ralstonia solanacearum strain CIAT_078 plasmid megaplasmid, complete sequence	214489-214516	7	0.75
NZ_CP029189_5	5.8|1714151|28|NZ_CP029189|CRT	1714151-1714178	28	NZ_CP041042	Paracoccus sp. AK26 plasmid pAK4, complete sequence	35394-35421	7	0.75
NZ_CP029189_5	5.8|1714151|28|NZ_CP029189|CRT	1714151-1714178	28	NZ_CP026091	Ralstonia solanacearum strain IBSBF 2570 plasmid unnamed, complete sequence	1805837-1805864	7	0.75
NZ_CP029189_5	5.8|1714151|28|NZ_CP029189|CRT	1714151-1714178	28	NC_014309	Ralstonia solanacearum CFBP2957 plasmid RCFBPv3_mp, complete genome	2034344-2034371	7	0.75
NZ_CP029189_5	5.8|1714151|28|NZ_CP029189|CRT	1714151-1714178	28	NZ_CP021653	Ralstonia solanacearum strain RS 488 plasmid unnamed, complete sequence	1748126-1748153	7	0.75
NZ_CP029189_5	5.8|1714151|28|NZ_CP029189|CRT	1714151-1714178	28	NZ_CP026093	Ralstonia solanacearum strain SFC plasmid unnamed, complete sequence	1805991-1806018	7	0.75
NZ_CP029189_5	5.8|1714151|28|NZ_CP029189|CRT	1714151-1714178	28	NZ_CP021767	Ralstonia solanacearum strain RS 489 plasmid unnamed, complete sequence	1748142-1748169	7	0.75
NZ_CP029189_5	5.8|1714151|28|NZ_CP029189|CRT	1714151-1714178	28	NZ_CP012688	Ralstonia solanacearum strain UY031 plasmid unnamed, complete sequence	1748124-1748151	7	0.75
NZ_CP029189_5	5.8|1714151|28|NZ_CP029189|CRT	1714151-1714178	28	NC_017575	Ralstonia solanacearum Po82 megaplasmid, complete sequence	1805504-1805531	7	0.75
NZ_CP029189_5	5.8|1714151|28|NZ_CP029189|CRT	1714151-1714178	28	NZ_CP026308	Ralstonia solanacearum strain IBSBF 2571 plasmid unnamed, complete sequence	1805448-1805475	7	0.75
NZ_CP029189_5	5.3|1713932|28|NZ_CP029189|CRT	1713932-1713959	28	NZ_AP022607	Mycobacterium branderi strain JCM 12687 plasmid pJCM12687	127593-127620	8	0.714
NZ_CP029189_5	5.3|1713932|28|NZ_CP029189|CRT	1713932-1713959	28	MN234228	Mycobacterium phage Tourach, complete genome	22927-22954	8	0.714
NZ_CP029189_5	5.8|1714151|28|NZ_CP029189|CRT	1714151-1714178	28	MN693642	Marine virus AFVG_250M194, complete genome	30726-30753	8	0.714
NZ_CP029189_5	5.9|1714199|34|NZ_CP029189|CRT	1714199-1714232	34	NZ_CP006369	Aureimonas sp. AU20 plasmid pAU20b, complete sequence	172353-172386	10	0.706

1. spacer 5.6|1714061|28|NZ_CP029189|CRT matches to MK864264 (Gordonia phage VanDeWege, complete genome) position: , mismatch: 4, identity: 0.857

gaaaccaccgccaccaccggaaggacgg	CRISPR spacer
gccaccaccgccaccaccggaaggtccg	Protospacer
*  ********************* * *

2. spacer 5.6|1714061|28|NZ_CP029189|CRT matches to MH479910 (Gordonia phage Danyall, complete genome) position: , mismatch: 4, identity: 0.857

gaaaccaccgccaccaccggaaggacgg	CRISPR spacer
gccaccaccgccaccaccggaaggtccg	Protospacer
*  ********************* * *

3. spacer 5.6|1714061|28|NZ_CP029189|CRT matches to MH479917 (Gordonia phage KimmyK, complete genome) position: , mismatch: 4, identity: 0.857

gaaaccaccgccaccaccggaaggacgg	CRISPR spacer
gccaccaccgccaccaccggaaggtccg	Protospacer
*  ********************* * *

4. spacer 5.6|1714061|28|NZ_CP029189|CRT matches to KX557286 (Gordonia phage Twister6, complete genome) position: , mismatch: 4, identity: 0.857

gaaaccaccgccaccaccggaaggacgg	CRISPR spacer
gccaccaccgccaccaccggaaggtccg	Protospacer
*  ********************* * *

5. spacer 5.6|1714061|28|NZ_CP029189|CRT matches to MK864267 (Gordonia phage Valary, complete genome) position: , mismatch: 4, identity: 0.857

gaaaccaccgccaccaccggaaggacgg	CRISPR spacer
gccaccaccgccaccaccggaaggtccg	Protospacer
*  ********************* * *

6. spacer 5.6|1714061|28|NZ_CP029189|CRT matches to MK967381 (Gordonia phage RogerDodger, complete genome) position: , mismatch: 4, identity: 0.857

gaaaccaccgccaccaccggaaggacgg	CRISPR spacer
gccaccaccgccaccaccggaaggtccg	Protospacer
*  ********************* * *

7. spacer 5.6|1714061|28|NZ_CP029189|CRT matches to MK864265 (Gordonia phage Barb, complete genome) position: , mismatch: 4, identity: 0.857

gaaaccaccgccaccaccggaaggacgg	CRISPR spacer
gccaccaccgccaccaccggaaggtccg	Protospacer
*  ********************* * *

8. spacer 5.6|1714061|28|NZ_CP029189|CRT matches to MT939492 (Xanthomonas phage Xoo-sp14, complete genome) position: , mismatch: 4, identity: 0.857

gaaaccaccgccaccaccggaaggacgg	CRISPR spacer
gaagccaccgccaccaccggaaccaccg	Protospacer
***.******************  ** *

9. spacer 4.1|1613706|27|NZ_CP029189|CRISPRCasFinder matches to NZ_CP026517 (Deinococcus sp. NW-56 plasmid unnamed1, complete sequence) position: , mismatch: 5, identity: 0.815

cgacgcatgaggcccggtacgggtccg	CRISPR spacer
cggcgcatgaggcccggtccgggccaa	Protospacer
**.*************** ****.* .

10. spacer 5.3|1713932|28|NZ_CP029189|CRT matches to AP021851 (Deinococcus grandis ATCC 43672 plasmid: pDEGR-2 DNA, complete genome) position: , mismatch: 5, identity: 0.821

gaaaccgccaccaccaccggaaggacgg	CRISPR spacer
gccaccgccaccgccaccggaaggaggc	Protospacer
*  *********.************ * 

11. spacer 5.3|1713932|28|NZ_CP029189|CRT matches to NC_015951 (Streptomyces violaceusniger Tu 4113 plasmid pSTRVI01, complete sequence) position: , mismatch: 5, identity: 0.821

gaaaccgccaccaccaccggaaggacgg	CRISPR spacer
gcgaccgccaccacctcgggaaggaccg	Protospacer
* .************ * ******** *

12. spacer 5.6|1714061|28|NZ_CP029189|CRT matches to NC_023591 (Mycobacterium phage Adler, complete genome) position: , mismatch: 5, identity: 0.821

gaaaccaccgccaccaccggaaggacgg	CRISPR spacer
gaaaccaccgccaccaccggaacctgag	Protospacer
**********************    .*

13. spacer 5.6|1714061|28|NZ_CP029189|CRT matches to KF981876 (UNVERIFIED: Mycobacterium phage ADLER F1725, complete genome) position: , mismatch: 5, identity: 0.821

gaaaccaccgccaccaccggaaggacgg	CRISPR spacer
gaaaccaccgccaccaccggaacctgag	Protospacer
**********************    .*

14. spacer 5.6|1714061|28|NZ_CP029189|CRT matches to NC_021361 (Pseudomonas fluorescens A506 plasmid pA506, complete sequence) position: , mismatch: 5, identity: 0.821

gaaaccaccgccaccaccggaaggacgg	CRISPR spacer
gataccaccgacaccaccggaaggagta	Protospacer
** ******* **************  .

15. spacer 5.6|1714061|28|NZ_CP029189|CRT matches to MK814761 (Gordonia phage SmokingBunny, complete genome) position: , mismatch: 5, identity: 0.821

gaaaccaccgccaccaccggaaggacgg	CRISPR spacer
accaccaccgccaccaccggaaggtccg	Protospacer
.  ********************* * *

16. spacer 5.6|1714061|28|NZ_CP029189|CRT matches to MT310872 (Gordonia phage Evamon, complete genome) position: , mismatch: 5, identity: 0.821

gaaaccaccgccaccaccggaaggacgg	CRISPR spacer
accaccaccgccaccaccggaaggtccg	Protospacer
.  ********************* * *

17. spacer 5.6|1714061|28|NZ_CP029189|CRT matches to MN010760 (Gordonia phage Nubi, complete genome) position: , mismatch: 5, identity: 0.821

gaaaccaccgccaccaccggaaggacgg	CRISPR spacer
accaccaccgccaccaccggaaggtccg	Protospacer
.  ********************* * *

18. spacer 5.6|1714061|28|NZ_CP029189|CRT matches to NC_008010 (Deinococcus geothermalis DSM 11300 plasmid pDGEO01, complete sequence) position: , mismatch: 5, identity: 0.821

gaaaccaccgccaccaccggaaggacgg	CRISPR spacer
gtcaccaccgccaccaccgtgaggacga	Protospacer
*  **************** .******.

19. spacer 5.3|1713932|28|NZ_CP029189|CRT matches to NZ_CP007796 (Azospirillum brasilense strain Az39 plasmid AbAZ39_p3, complete sequence) position: , mismatch: 6, identity: 0.786

gaaaccgccaccaccaccggaaggacgg	CRISPR spacer
agcgcggccaccagcaccggaaggacgg	Protospacer
.. .* ******* **************

20. spacer 5.3|1713932|28|NZ_CP029189|CRT matches to NZ_CP032325 (Azospirillum brasilense strain MTCC4035 plasmid p4, complete sequence) position: , mismatch: 6, identity: 0.786

gaaaccgccaccaccaccggaaggacgg	CRISPR spacer
agcgcggccaccagcaccggaaggacgg	Protospacer
.. .* ******* **************

21. spacer 5.3|1713932|28|NZ_CP029189|CRT matches to NZ_CP024582 (Roseomonas sp. FDAARGOS_362 plasmid unnamed1, complete sequence) position: , mismatch: 6, identity: 0.786

gaaaccgccaccaccaccggaaggacgg	CRISPR spacer
ggcaccaccaccaccaccggcaggacca	Protospacer
*. ***.************* ***** .

22. spacer 5.3|1713932|28|NZ_CP029189|CRT matches to MN284907 (Gordonia phage Fireball, complete genome) position: , mismatch: 6, identity: 0.786

gaaaccgccaccaccaccggaaggacgg	CRISPR spacer
accaccgccatcaccaccggaaggtccg	Protospacer
.  *******.************* * *

23. spacer 5.3|1713932|28|NZ_CP029189|CRT matches to NC_030913 (Gordonia phage Wizard, complete genome) position: , mismatch: 6, identity: 0.786

gaaaccgccaccaccaccggaaggacgg	CRISPR spacer
accaccgccatcaccaccggaaggtccg	Protospacer
.  *******.************* * *

24. spacer 5.6|1714061|28|NZ_CP029189|CRT matches to NZ_CP024582 (Roseomonas sp. FDAARGOS_362 plasmid unnamed1, complete sequence) position: , mismatch: 6, identity: 0.786

gaaaccaccgccaccaccggaaggacgg	CRISPR spacer
ggcaccaccaccaccaccggcaggacca	Protospacer
*. ******.********** ***** .

25. spacer 5.6|1714061|28|NZ_CP029189|CRT matches to GU071095 (Synechococcus phage S-SM2, complete genome) position: , mismatch: 6, identity: 0.786

gaaaccaccgccaccaccggaaggacgg	CRISPR spacer
accaccaccgccaccgtcggaaggacag	Protospacer
.  ************..*********.*

26. spacer 5.8|1714151|28|NZ_CP029189|CRT matches to NC_017957 (Tistrella mobilis KA081020-065 plasmid pTM1, complete sequence) position: , mismatch: 6, identity: 0.786

gaaaccgccgccaccaccagagggacgg	CRISPR spacer
tctgccgccgccaccaccagcgggaggg	Protospacer
   .**************** **** **

27. spacer 5.8|1714151|28|NZ_CP029189|CRT matches to NZ_CP024314 (Rhizobium sp. NXC24 plasmid pRspNXC24c, complete sequence) position: , mismatch: 6, identity: 0.786

gaaaccgccgccaccaccagagggacgg	CRISPR spacer
accagcgccgccaacaccagagagacgg	Protospacer
.  * ******** ********.*****

28. spacer 5.3|1713932|28|NZ_CP029189|CRT matches to NZ_CP029834 (Azospirillum ramasamyi strain M2T2B2 plasmid unnamed4, complete sequence) position: , mismatch: 7, identity: 0.75

gaaaccgccaccaccaccggaaggacgg	CRISPR spacer
ccggtcgccagcaccaccggaagggcgg	Protospacer
  ...***** *************.***

29. spacer 5.3|1713932|28|NZ_CP029189|CRT matches to NZ_LN907828 (Erwinia gerundensis isolate E_g_EM595 plasmid pEM01, complete sequence) position: , mismatch: 7, identity: 0.75

gaaaccgccaccaccaccggaaggacgg	CRISPR spacer
agaaccgccaccagcaccggcaggatca	Protospacer
..*********** ****** ****. .

30. spacer 5.3|1713932|28|NZ_CP029189|CRT matches to NC_016624 (Azospirillum lipoferum 4B plasmid AZO_p5, complete sequence) position: , mismatch: 7, identity: 0.75

gaaaccgccaccaccaccggaaggacgg	CRISPR spacer
ccggtcgccagcaccaccggaaggccgg	Protospacer
  ...***** ************* ***

31. spacer 5.6|1714061|28|NZ_CP029189|CRT matches to NZ_LR594663 (Variovorax sp. RA8 plasmid 2) position: , mismatch: 7, identity: 0.75

gaaaccaccgccaccaccggaaggacgg	CRISPR spacer
aggaccaccgccaccaccgccaggacca	Protospacer
...****************  ***** .

32. spacer 5.6|1714061|28|NZ_CP029189|CRT matches to NZ_LR594663 (Variovorax sp. RA8 plasmid 2) position: , mismatch: 7, identity: 0.75

gaaaccaccgccaccaccggaaggacgg	CRISPR spacer
aggaccaccgccaccaccgccaggacca	Protospacer
...****************  ***** .

33. spacer 5.6|1714061|28|NZ_CP029189|CRT matches to NZ_LR594663 (Variovorax sp. RA8 plasmid 2) position: , mismatch: 7, identity: 0.75

gaaaccaccgccaccaccggaaggacgg	CRISPR spacer
aggaccaccgccaccaccgccaggacca	Protospacer
...****************  ***** .

34. spacer 5.6|1714061|28|NZ_CP029189|CRT matches to NZ_LR594663 (Variovorax sp. RA8 plasmid 2) position: , mismatch: 7, identity: 0.75

gaaaccaccgccaccaccggaaggacgg	CRISPR spacer
aggaccaccgccaccaccgccaggacca	Protospacer
...****************  ***** .

35. spacer 5.6|1714061|28|NZ_CP029189|CRT matches to NZ_LR594663 (Variovorax sp. RA8 plasmid 2) position: , mismatch: 7, identity: 0.75

gaaaccaccgccaccaccggaaggacgg	CRISPR spacer
aggaccaccgccaccaccgccaggacca	Protospacer
...****************  ***** .

36. spacer 5.8|1714151|28|NZ_CP029189|CRT matches to NZ_CP012940 (Ralstonia solanacearum strain UW163 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.75

gaaaccgccgccaccaccagagggacgg	CRISPR spacer
tgcgccgccgccaccaccagcgcgacga	Protospacer
 . .**************** * ****.

37. spacer 5.8|1714151|28|NZ_CP029189|CRT matches to NZ_CP012944 (Ralstonia solanacearum strain IBSBF1503 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.75

gaaaccgccgccaccaccagagggacgg	CRISPR spacer
tgcgccgccgccaccaccagcgcgacga	Protospacer
 . .**************** * ****.

38. spacer 5.8|1714151|28|NZ_CP029189|CRT matches to NC_020276 (Mycobacterium intracellulare subsp. yongonense 05-1390 plasmid pMyong2, complete sequence) position: , mismatch: 7, identity: 0.75

gaaaccgccgccaccaccagagggacgg	CRISPR spacer
ctcaccgccgccaccaccagacgggcca	Protospacer
   ****************** **.* .

39. spacer 5.8|1714151|28|NZ_CP029189|CRT matches to CP047139 (Ralstonia solanacearum strain CFBP 8695 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.75

gaaaccgccgccaccaccagagggacgg	CRISPR spacer
tgcgccgccgccaccaccagcgcgacga	Protospacer
 . .**************** * ****.

40. spacer 5.8|1714151|28|NZ_CP029189|CRT matches to NZ_CP051295 (Ralstonia solanacearum strain CIAT_078 plasmid megaplasmid, complete sequence) position: , mismatch: 7, identity: 0.75

gaaaccgccgccaccaccagagggacgg	CRISPR spacer
tgcgccgccgccaccaccagcgcgacga	Protospacer
 . .**************** * ****.

41. spacer 5.8|1714151|28|NZ_CP029189|CRT matches to NZ_CP041042 (Paracoccus sp. AK26 plasmid pAK4, complete sequence) position: , mismatch: 7, identity: 0.75

gaaaccgccgccaccaccagagggacgg	CRISPR spacer
tccaccgccgccaccaccagaacgacct	Protospacer
   ******************. ***  

42. spacer 5.8|1714151|28|NZ_CP029189|CRT matches to NZ_CP026091 (Ralstonia solanacearum strain IBSBF 2570 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.75

gaaaccgccgccaccaccagagggacgg	CRISPR spacer
tgcgccgccgccaccaccagcgcgacga	Protospacer
 . .**************** * ****.

43. spacer 5.8|1714151|28|NZ_CP029189|CRT matches to NC_014309 (Ralstonia solanacearum CFBP2957 plasmid RCFBPv3_mp, complete genome) position: , mismatch: 7, identity: 0.75

gaaaccgccgccaccaccagagggacgg	CRISPR spacer
tgcgccgccgccaccaccagcgcgacga	Protospacer
 . .**************** * ****.

44. spacer 5.8|1714151|28|NZ_CP029189|CRT matches to NZ_CP021653 (Ralstonia solanacearum strain RS 488 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.75

gaaaccgccgccaccaccagagggacgg	CRISPR spacer
tgcgccgccgccaccaccagcgcgacga	Protospacer
 . .**************** * ****.

45. spacer 5.8|1714151|28|NZ_CP029189|CRT matches to NZ_CP026093 (Ralstonia solanacearum strain SFC plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.75

gaaaccgccgccaccaccagagggacgg	CRISPR spacer
tgcgccgccgccaccaccagcgcgacga	Protospacer
 . .**************** * ****.

46. spacer 5.8|1714151|28|NZ_CP029189|CRT matches to NZ_CP021767 (Ralstonia solanacearum strain RS 489 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.75

gaaaccgccgccaccaccagagggacgg	CRISPR spacer
tgcgccgccgccaccaccagcgcgacga	Protospacer
 . .**************** * ****.

47. spacer 5.8|1714151|28|NZ_CP029189|CRT matches to NZ_CP012688 (Ralstonia solanacearum strain UY031 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.75

gaaaccgccgccaccaccagagggacgg	CRISPR spacer
tgcgccgccgccaccaccagcgcgacga	Protospacer
 . .**************** * ****.

48. spacer 5.8|1714151|28|NZ_CP029189|CRT matches to NC_017575 (Ralstonia solanacearum Po82 megaplasmid, complete sequence) position: , mismatch: 7, identity: 0.75

gaaaccgccgccaccaccagagggacgg	CRISPR spacer
tgcgccgccgccaccaccagcgcgacga	Protospacer
 . .**************** * ****.

49. spacer 5.8|1714151|28|NZ_CP029189|CRT matches to NZ_CP026308 (Ralstonia solanacearum strain IBSBF 2571 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.75

gaaaccgccgccaccaccagagggacgg	CRISPR spacer
tgcgccgccgccaccaccagcgcgacga	Protospacer
 . .**************** * ****.

50. spacer 5.3|1713932|28|NZ_CP029189|CRT matches to NZ_AP022607 (Mycobacterium branderi strain JCM 12687 plasmid pJCM12687) position: , mismatch: 8, identity: 0.714

gaaaccgccaccaccaccggaaggacgg	CRISPR spacer
ttgaccgccaccaccaccggcaggtgca	Protospacer
  .***************** ***   .

51. spacer 5.3|1713932|28|NZ_CP029189|CRT matches to MN234228 (Mycobacterium phage Tourach, complete genome) position: , mismatch: 8, identity: 0.714

gaaaccgccaccaccaccggaaggacgg	CRISPR spacer
cgaaccgccaccaccaccggcagccgaa	Protospacer
 .****************** **   ..

52. spacer 5.8|1714151|28|NZ_CP029189|CRT matches to MN693642 (Marine virus AFVG_250M194, complete genome) position: , mismatch: 8, identity: 0.714

gaaaccgccgccaccaccagagggacgg	CRISPR spacer
ttggacgccgccaccaccagaggaaccc	Protospacer
  .. ******************.**  

53. spacer 5.9|1714199|34|NZ_CP029189|CRT matches to NZ_CP006369 (Aureimonas sp. AU20 plasmid pAU20b, complete sequence) position: , mismatch: 10, identity: 0.706

gaaaccgccaccaccgctggacggccggccactg----	CRISPR spacer
ttgcccgccacccccgctggacggcggg----tgtgat	Protospacer
  . ******** ************ **    **    

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site
DBSCAN-SWA_1	1678252 : 1685211	8	Streptomyces_phage(28.57%)	NA	NA

Sequences of DBSCAN-SWA_1

Nucleotide sequences of DBSCAN-SWA_1

>NZ_CP029189|1678252:1685211|DBSCAN-SWA
GATGGACGATCTGACGCTGGTACGCGACCACACGGTCTACCGGTGCGTGATGGGCTCCCGGGCGTTCGGACTGGCGACGGAGGCGAGCGACACCGACCTGCGCGGTGTCTACCTCGCCCCGACGCCGCTGTTCTGGCGGTTCGAGAAGCCCCCCACGCATGTGGAGGGCCCGCGGGACGAGGAGTTCTCCTGGGAGCTGGAGCGCTTCTGCGAACTCGCCCTGCGGGCCAACCCGAACATCCTGGAGTGCCTGCACTCCCCCCTGGTGGAAGAGGTCACCCCGGTCGGCGAGGAGCTCCTCTCCCTCCGCGGGGCCTTCCTCTCCCGCCGGGCCCACACCAGCTTCAGCCGGTACGCGGCCTCGCAGCGCGGCAAACTCCTCGCGGACGTCCGCGTGCACGGCGCCCCGCGCTGGAAGCACGCCATGCACCTGCTGCGCCTGCTGCTGTCCTGCCGTGACCTCCTGCGCACCGGCCGGCTGACCGTCGACGCCGGACCGCACCGCGAGCGCCTGCTCGCTGTCCGCCGGGGCGAGCTCACCTGGGAGGAGGCCGACGCCTGGATGACCCGCCTCCAGGAGGAGACGGAGAGTGCCCTGGCCGCCACCGCGCTGCCCGCGGAGCCGGACCACGCCCGGGTGCAGGACTTCCTGGTCCGCACCCGCCGCGCGTCAGCCGTGTAGCGTGCGCCGCCGTACGACGAACTCGTCGAGCGCGTCGTACGCCGACGCCTGCCCGGGCAGCACGGACACGGCCTGCGCCGCGTCCAGCACCGCGTGAAGCGCCTCGAAGTCCTCGCGCACGCCGTCGACGGGCGGGCCCTCGTAGCCCCCGTGCTCGGCGGCCACCTTGGCCTCGATCAGGGCGGCGAGGTACGGGGGCGCCTCCGGCACCTCGGCCAGCAGGGTCGGCAGGTGTGCCTGCACCTCGCCCGAGCGCATGAGGTGGATGCCGGTGAGCAGCGCCCGGAACGCGTAGAGCAGCGGCTTGAGTTCGGCGGCCTTCCCGAAGAGCCGCCACTGCGTACCGGCGAACCCGCGGTAGTGGTGGGCGTGGTGGGAGGTCAGCACGCCCGGGGACAGCGCGATCAGCTCCTCGTGGGCCGCTGTCGTGTGGACCACGAGCGGGGAGAGCAGCTGCTCCAGGACGTAGCCGTTGCGGTTCAGCATCAGGCGGACGAACTTGCGCAGGTCGTGCGTGACGAGGTCCATCTCCACGTCGTCCCGGTCCCACATGCGGCTCCGGGTCTCCTCCGGATCGCGCAGGCCCAGCAGGTCCTGAGCCGGGAGCAGGTGGGCGCCGCGCAGGTCGATGTCGGAGTCCCGGGACGGGAAGCCGTACAGGTGCGCCCCGGAGACGGTGGCGAAGAGCAGCGGGTCGGGCTGCTCCGCCACCACGGGAGTCAGGTCGATACTCAGTGCGTCCAGCATGGATCAAGCATCCCAGAGGGCGCCGAAGGCGAGGAGTTCGTCCCGGTACTCGATGCGGCCCTCCCACTCGCCGGGCCAGACGTCCGCGCCGAGGTGGGCTCCGGCGAAGGCGCCCGCGAGGCAGGCGATGGAGTCGGAGTCACCGCGGGTGCAGGCGGCCCGGCGCAGCGCGGTCAGCGGCTCGTCGGGGAAGAGCAGGAAGCAGTGCAGGGCGGTGGCGAGGGCCTCCTCGGCTATCCAGCCGTCGCCCGTGGTCAGGCAGGGGTCGGTCTCCGGGGACGGCGACCGCAGGGCGGCCGCGAGCCGGTCCAGGACGGCCAGGCAGTCGTCCCAGCCCCGCGCGATGAAGGACTCCGGCGATGCGTCGGAGGCGGTCCGCATCCACAGGTCGCCCAGCCAGCGCTCGTGGTAGCGGGTGCGGTTCTCCAGCGCGTAGGAGCGCAGCCGTCCGACGAGCCCGGTCACCTCGGTGCCCCCGGCCAGCAGGTGCACCGCCCGCGCGGTCAGGTCGGAGGCGGCGAGCGCCGTCGGGTGCCCGTGGGTGAGGGCCGACTGGAGCTGTGCGGCGCCGGCCCGTTCCTCCTCGGTCCAGTCCGGCACCAGGCCGACCGGGACCACGCGCATGTTGGCGCCGCAGCCCTTGGAGCCGATCTGGCTGGCGTCGCGCCAGTCCCGGTCCGGGGTGTCGAGCAGCTGGCAGGCCGTCATGCAGGTGCGGCCCGGGGCCCGGTTGTTCTCCGGGGAGTGGTACCAGTCGACGAACTCCTCGCGGACCGGCCGGGTCAGGCGCAGCGGGCCCACCGGGCCGCGCTCCGCCGCCGTGCGCATGCCGCGGGCCAGGGCGAGGGTCATCTGGGTGTCGTCCGTGACGATCGCCGGGCTCGGCAGGCGCATCTCGCGCCAGGGGCCCGTCTTGGCCAGGATCGAGGGAACGTCGTTGAACTCGGTCGGGAAGCCGAGGGCGTCGCCCAGGGCCAGGCCGATCAGGGCGCCCGTCGCGGCTCGCTTGGTCATCGGGTGGATCCTTCCGGTCGCAGTAGCGGGGGGTGGAGCGTGGTCGCCGGACCGGGCCGGTAGAGGGCGGCCGGTTTGCCGCGGCCGCCGGTCAGCCGCGCCGCGCCCGGTACGGCCTCCACGAATCCCGGCGTCGCCAGGACCTTGCGGCGGAAGTTGGGGCGGTCGAGGGTGGTGCTCCAGACGGTCTCGTAGACGGACTGCAGCTCGCCGAGGGTGAACTCGGGCGGGCAGAAGCCCGTGGCCAGGCAGGTGTACTCGAGCTTGGCGCCGATCCGCTCGCGTGCGTCCGCCAGGATCACCGCGTGGTCGAAGGCGAGTTCCGCGACCTCGTCCAGCGCGATCCAGCGGGCCTGCGCCGCGTCCCCGCCGCCGTCGGCCGCCGGCTCCGGCAGGTCCGGTACGAGCGCGGTGAAGGCCACGGAGACCACCCGCATCCGGGGGTCGCGGTCCGGTTCGCTGTACGTGCGCAGCTGCTCCAGGTGGAGCGCGGCCACGAGGCGGTCCGGCAGCCCGGTCTCCTCGGCCAGTTCGCGCCGGGCGGCGGTCTCGGCGGACTCCCTCGGCAGGACGAACCCGCCGGGCAGCGCCCAGGCCCCGGCGTACGGTTCCTGGCCGCGCCGGATCAGCAGGACGTGCAGGGCGCCGCCGCGCACGGTGAAGACGGCCAGGTCGACGGTCACCGCGAACGGCTCGAAGGCGTGCGGGTCATAGCCGGCGGTCATCGGTTCTCCGGGAGGGGGTCGGTGAAGTGCCAGCCCTCGGCCAGCAGTGCGTCCACGGCCCGGACGGCCTCCTCCAGCCGGGCCGCCCGATCCCCGCGCACGACGAGGAAACGCCTCCCGGTGCGCTCCAGTTCCGCCCGGAACCGCTCGGTCATCCAGGGCCGCAGCTGGGGTCCGTCCCGCAGACCGTCGTCCTCGAAGGGCACGTCGGTGTGGTCGGTGAGCAGGTACAGGTCCCGCCGGGTGAGGCCGGCGATCCGCTCGACCTCCGCGTTGCGGCCGCCCATGTAGCGCTCGTGCCAGATGCCCGTCGCGAAGGAGTCGGTGTCGCAGAACAGCACCGGGGAGCCGAGCCTGGCCGCCTGTTCCTCGTCCGCGTCCTGGCGTCGCGCGATGACCGGGAACTCCTCCGAGGTGAAGGACACGTCCGCCCAGGAGGCGGCCGGGTCGGCGGCGCGCGCCGCCGCCAGCTTCTCCTCGCTGTACCGGCGCCCGTACTCGGCGACCCAGCCCGTCTTGGCCCATACGCCGCCGCGCCGCCGGTAGTGGTCCGCGAGGGCCCGTGACAGCGTGGTGGTGCCGGTGGACTCCGCGCCGAGCACGACGACCCGCCGGGTCAGGGCGGCCCGGACGGCCGGCCCGAGGAACTCCCAGGAGCCGGCCGGGTCCCTGCGCACCGCCGTGCCGGACACGGGGAACAGCGTCCGCTCCCGGTCCACGAGGACCTCTTCGGCGCCGAACCGGCGGGCGAGCTCGCTCCCGTACTCCTCGGAGGTGAACACGGCGTCCACCCGCCCGGGGACCGCACAGCGGAAGACGGCCATGTGCGCCTCCCAGATCTCCGGGTCGTGCAGGTCGACCGGGATGTCGTCGACCGCGCCGACGACGTCGGCCCCGGGGTGCGCCTCGCGCATCCAGGCGACCCGGTCGGCGAGCGGGACCGACTCGACCGAGGCCGCGCACACGAGCACGGTCAGCCGCTCGCACTGGTCCTGGGCGGTGCGTACGAGGTGGTGGTGCCCGGCGTGCGGCGGGTAGAACTTGCCGAGGACCAGGCCGTGCGCGTGGCGTCTCATGCCGTCGCCTCCGCCGTCGTACGGGTGCTGCGCGCGGGCAGGGTGCGCCGCCAGCCGAGGAGCCCGACGACGCACAGGGCGAGGAAGCCCACGTAGAGCGCGGAGGTCAGGTAGAGGCCCTTGTACGCGTAGAGCGGGATGTAGACCAGGTCGGCCGCGATCCACAGCCACCAGGACTCGACGAGCTTGCGGCACTGTCCGTAGGTCGCCGCGAGGGAGAGCCCGGTGGTGGCCGCGTCCCAGAAGGGGACGGTGGAGTCGGTGGCCCGGCTCAGCAGCAGGGTGAGCGCGAGCACCCCCACCGCCCCCGCCGCCGCGAGCGCGGCCCACTCGGTGCGCGAGGTGCGGCGCACCGGCAGGGCCTCGGCGGATCCTGGTCCACCCCCGTGGGTCCAGGACCACCAGCCGTAGGCGGCGAGGGCGATGAAGACGATCTGGAGCCCGGCGTCGGCGTAGAGGCCGGCCTGGGCGAAGAGCACGATGAAGAAGACGTTGTTGGCGATCCCGATGGGCCAGTTGGCCACGTGCTGCCGGGCGACCAGCCAGACGCACAGGGCGCCGGTGGCGAAGCCCAGCACCTCGGTCCAGCTCATGGTCCAGCTCATGACGACCCCCCTCCTACTGCTTAATGGTCAGATTGACTATAAACAGTGACCGGGGTTCCCGGCAAGCAGAAAACCCGCGGCGCCCGAAAGGGCACCGCGGGTTTTCCGTGGTCGTACCGGCCGCCTGCGGGGCGACCGGCCCGCGTCCTAGAGACCGACCTCGCGCATCAGCATGCCGACCTCGGTGTTGGTCAGGCGGCGCAGCCAGCCGGACTTCTGGTCGCCCAGCTCGATGGGACCGAAGGAGGTCCGGACGAGCTTGTCGACGGGGAAGCCCGCCTCGGACAGCATGCGGCGCACGATGTGCTTGCGGCCCTCGTGGAGGGTCACCTCGACCAGGTAGTTCTTGCCGACCTGGTCGACGACGCGGAAGTTGTCGGCGCGGGCGTACCCGTCCTCCAGCTCGATGCCGTCCTTGAGCCGCTTGCCGATGTCACGCGGCAGCGAGCCGGTGATCGCGGCCACGTACGTCTTCTGCACGCCGTACTTCGGGTGCGTGAGGCGGTGGGCCAGCTCGCCGTGGTTGGTGAGCAGGATGATGCCCTCGGTCTCGGTGTCGAGCCGGCCGACGTGGAAGAGCCGGGTCTCACGGTTGGTGACGTAGTCGCCCAGGCACTGGCGGCCGTCCGGGTCCTCCATCGTGGAGACGACACCGGCCGGCTTGTTCAGCGCGAAGAACAGGTACGACTGGGTGGCGACGGTCAGGCCGTCCACCTTGATCTCGTCCTTGGGCTGCACTCGGCGGCCCTGCTCCAGCACGATCTCGCCGTTGACCTCGACGCGGGCCTGCTCGATGAGCTCCTCGCAGGCGCGGCGCGAACCCATGCCGGCGCGGGCGAGCACCTTCTGCAGACGCTCGCCCTCCTCCTCGGCACCCGGGAAGGTCTTCGGGGTCTTGACCACGGGCTTGTCGGCGTACCGGTCGCGCACGCGCTCCTCGATCCGCGCGTCCAGCTCGCGGGGGCGGGACTGGCCGCTCCGGCTGCCGGGGCCGCTGCGCGGGCCGCCGGCACCGCCGATGCCGGGGGTCCTGGAGGTCCGGGGACCGCCCTTGGCGCCACCGCGGGCCGCCGCGCCGCGGGCACCGCCGCCGCCGGCCTTGGGGCCGCTGCGTCCGCTGCGCTCGCCCTCGGGGCCCACGTCGTAGCGACGCTCCTCGGGACGCGGGTTGCGGATGCGGGGAGCCGGCTGGTCGCGGTCGCGCGAGTCGGAGCCGCCGCCCTGGTAGCCGCCACCGCCCTGGTAGCCGCCGCGGGAGCCGCCGGAGCTGCCACCGCGGGACCCGCCGGAGCTGCCGCCCCGGTAGCCGCCGCCGGAGCTGCCGCCACGGGAGCCGCCGGAGCCGCTGCCACCGCCGGAGCCGCTTCCGCGGTAGCCACCGCCGCCGCTGGAGGAGCCGCCGCGGGCACTACCGCGCCCGCCGCCACCGCCGCTGTTCCTGTTGCCGCCACCGTTGCCGTTGCCGCTGCTTCGCATCAAAGTTCCGTCGTCTTGTCGTCGTCTGCATCTGTGTCCGGTGCGTCCGGATCGAACGACGGAACACCTTCCTGCGTCTCGGCTTCGATCGCGTCCGCCTCGGGGAGGAAGGGCGCGAGCTCCGGGAGCTCGGCAAGGCCGCGCAGGCCCATCCGCTCCAAAAAGTGGTTCGTCGTCCTGTACAGGATCGCACCTGTTTCGGGTTCCGTCCCCGCCTCCTCCACCAGACCGCGCTGGAGGAGGGTCCGCATGACCCCGTCGCAGTTGACTCCGCGGACCGCGGAAACCCGCGACCGGCTCACCGGCTGGCGGTACGCGACGACCGCCAGGGTCTCCAGGGCCGCCTGGGTGAGCCGGGCCTGCTGGCCGTCCAGTACGAAGCCCTCCACCGCCGGTGCGTACTCGGCCCGGGTGTAGAACCGCCAGCCGCCGGCGACCAGCCTCAGCTCGAAGCCCCGGCGCGCGGCCGTGTACTCGTCGGCGAGCTCCCGCAGCGCCTGTCCGACCTCGCGCGGGGTCCGCTCCAGCACCTTGGCCAGGTGCGCCTCGGTGGCCGGCTCGTCCACCACCATCAGCACGGCCTCCAGGGCCGGCTTCAGCTCCAGCGCGGCCACCGCGCTCACGTCGCCGTTCAA

Protein sequences of DBSCAN-SWA_1

>NZ_CP029189|1678252:1685211|1683247_1684576_-|WP_150256808.1|DBSCAN-SWA
MRSSGNGNGGGNRNSGGGGGRGSARGGSSSGGGGYRGSGSGGGSGSGGSRGGSSGGGYRGGSSGGSRGGSSGGSRGGYQGGGGYQGGGSDSRDRDQPAPRIRNPRPEERRYDVGPEGERSGRSGPKAGGGGARGAAARGGAKGGPRTSRTPGIGGAGGPRSGPGSRSGQSRPRELDARIEERVRDRYADKPVVKTPKTFPGAEEEGERLQKVLARAGMGSRRACEELIEQARVEVNGEIVLEQGRRVQPKDEIKVDGLTVATQSYLFFALNKPAGVVSTMEDPDGRQCLGDYVTNRETRLFHVGRLDTETEGIILLTNHGELAHRLTHPKYGVQKTYVAAITGSLPRDIGKRLKDGIELEDGYARADNFRVVDQVGKNYLVEVTLHEGRKHIVRRMLSEAGFPVDKLVRTSFGPIELGDQKSGWLRRLTNTEVGMLMREVGL
>NZ_CP029189|1678252:1685211|1680690_1681419_-|WP_150256805.1|DBSCAN-SWA
MTAGYDPHAFEPFAVTVDLAVFTVRGGALHVLLIRRGQEPYAGAWALPGGFVLPRESAETAARRELAEETGLPDRLVAALHLEQLRTYSEPDRDPRMRVVSVAFTALVPDLPEPAADGGGDAAQARWIALDEVAELAFDHAVILADARERIGAKLEYTCLATGFCPPEFTLGELQSVYETVWSTTLDRPNFRRKVLATPGFVEAVPGAARLTGGRGKPAALYRPGPATTLHPPLLRPEGSTR
>NZ_CP029189|1678252:1685211|1684575_1685211_-|WP_150256809.1|DBSCAN-SWA
MNGDVSAVAALELKPALEAVLMVVDEPATEAHLAKVLERTPREVGQALRELADEYTAARRGFELRLVAGGWRFYTRAEYAPAVEGFVLDGQQARLTQAALETLAVVAYRQPVSRSRVSAVRGVNCDGVMRTLLQRGLVEEAGTEPETGAILYRTTNHFLERMGLRGLAELPELAPFLPEADAIEAETQEGVPSFDPDAPDTDADDDKTTEL
>NZ_CP029189|1678252:1685211|1678921_1679680_-|WP_150256803.1|DBSCAN-SWA
MLDALSIDLTPVVAEQPDPLLFATVSGAHLYGFPSRDSDIDLRGAHLLPAQDLLGLRDPEETRSRMWDRDDVEMDLVTHDLRKFVRLMLNRNGYVLEQLLSPLVVHTTAAHEELIALSPGVLTSHHAHHYRGFAGTQWRLFGKAAELKPLLYAFRALLTGIHLMRSGEVQAHLPTLLAEVPEAPPYLAALIEAKVAAEHGGYEGPPVDGVREDFEALHAVLDAAQAVSVLPGQASAYDALDEFVVRRRTLHG
>NZ_CP029189|1678252:1685211|1682491_1683100_-|WP_150256807.1|DBSCAN-SWA
MSWTMSWTEVLGFATGALCVWLVARQHVANWPIGIANNVFFIVLFAQAGLYADAGLQIVFIALAAYGWWSWTHGGGPGSAEALPVRRTSRTEWAALAAAGAVGVLALTLLLSRATDSTVPFWDAATTGLSLAATYGQCRKLVESWWLWIAADLVYIPLYAYKGLYLTSALYVGFLALCVVGLLGWRRTLPARSTRTTAEATA
>NZ_CP029189|1678252:1685211|1679683_1680694_-|WP_150256804.1|DBSCAN-SWA
MTKRAATGALIGLALGDALGFPTEFNDVPSILAKTGPWREMRLPSPAIVTDDTQMTLALARGMRTAAERGPVGPLRLTRPVREEFVDWYHSPENNRAPGRTCMTACQLLDTPDRDWRDASQIGSKGCGANMRVVPVGLVPDWTEEERAGAAQLQSALTHGHPTALAASDLTARAVHLLAGGTEVTGLVGRLRSYALENRTRYHERWLGDLWMRTASDASPESFIARGWDDCLAVLDRLAAALRSPSPETDPCLTTGDGWIAEEALATALHCFLLFPDEPLTALRRAACTRGDSDSIACLAGAFAGAHLGADVWPGEWEGRIEYRDELLAFGALWDA
>NZ_CP029189|1678252:1685211|1678252_1678933_+|WP_150256802.1|DBSCAN-SWA
MDDLTLVRDHTVYRCVMGSRAFGLATEASDTDLRGVYLAPTPLFWRFEKPPTHVEGPRDEEFSWELERFCELALRANPNILECLHSPLVEEVTPVGEELLSLRGAFLSRRAHTSFSRYAASQRGKLLADVRVHGAPRWKHAMHLLRLLLSCRDLLRTGRLTVDAGPHRERLLAVRRGELTWEEADAWMTRLQEETESALAATALPAEPDHARVQDFLVRTRRASAV
>NZ_CP029189|1678252:1685211|1681415_1682495_-|WP_150256806.1|DBSCAN-SWA
MRRHAHGLVLGKFYPPHAGHHHLVRTAQDQCERLTVLVCAASVESVPLADRVAWMREAHPGADVVGAVDDIPVDLHDPEIWEAHMAVFRCAVPGRVDAVFTSEEYGSELARRFGAEEVLVDRERTLFPVSGTAVRRDPAGSWEFLGPAVRAALTRRVVVLGAESTGTTTLSRALADHYRRRGGVWAKTGWVAEYGRRYSEEKLAAARAADPAASWADVSFTSEEFPVIARRQDADEEQAARLGSPVLFCDTDSFATGIWHERYMGGRNAEVERIAGLTRRDLYLLTDHTDVPFEDDGLRDGPQLRPWMTERFRAELERTGRRFLVVRGDRAARLEEAVRAVDALLAEGWHFTDPLPENR

Homologous phage analysis in the prophage region

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_150256802.1|1678252_1678933_+	nucleotidyltransferase	A0A1J0GW18	Streptomyces_phage	9.3e-16	38.8
WP_150256803.1|1678921_1679680_-	nucleotidyltransferase domain-containing protein	K4K696	Caulobacter_phage	3.3e-06	38.1
WP_150256804.1|1679683_1680694_-	ADP-ribosylglycohydrolase family protein	G3M9X5	Bacillus_virus	7.6e-06	29.3
WP_150256805.1|1680690_1681419_-	NUDIX domain-containing protein	A0A0E3JJF3	Streptomyces_phage	9.3e-22	46.4
WP_150256806.1|1681415_1682495_-	AAA family ATPase	A0A2K8HHU5	Bacteriophage	2.3e-32	31.1
WP_150256807.1|1682491_1683100_-	nicotinamide mononucleotide transporter	A0A0F6YPU8	Sinorhizobium_phage	2.5e-12	32.6
WP_150256808.1|1683247_1684576_-	pseudouridine synthase	NA	NA	NA	NA
WP_150256809.1|1684575_1685211_-	SMC-Scp complex subunit ScpB	A0A1B1IVT7	uncultured_Mediterranean_phage	4.9e-11	29.9