CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP043773	Salmonella enterica strain QH chromosome, complete genome	3 crisprs	PD-DExK,WYL,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,DinG	0	7	6	0
NZ_CP043774	Salmonella enterica strain QH plasmid p1, complete sequence	0 crisprs	cas14j	0	0	1	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP043773_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP043773_1

599324-599424

Orphan

Consensus_repeat	Method
GCTTCAGTGGCGAACGTCGTGAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP043773_1

>merge|NZ_CP043773|1|599324-599424|CRISPRCasFinder
GCTTCAGTGGCGAACGTCGTGAAGGCGGTCGTAATTTCAGCGGCGAACGTCGTGAAGGTGGTCGTGGTGATGGTCGTCGCTTCAGCGGCGAACGTCGTGAA

>NZ_CP043773|1|1|599324-599424|CRISPRCasFinder
GCTTCAGTGGCGAACGTCGTGAA	GGCGGTCGTAATTTCAGCGGCGAACGTCGTGAAGGTGGTCGTGGTGATGGTCGTC
GCTTCAGCGGCGAACGTCGTGAA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP043773.1\|WP_000532745.1\|601631_602351_+\|murein-L,D-transpeptidase	unknown	unknown	gnl\|CDD\|225577
NZ_CP043773.1\|WP_001540959.1\|603513_604410_-\|U32-family-peptidase	unknown	unknown	gnl\|CDD\|237968
NZ_CP043773.1\|WP_001670767.1\|594295_596431_+\|polyribonucleotide-nucleotidyltransferase	unknown	unknown	gnl\|CDD\|236995
NZ_CP043773.1\|WP_000059465.1\|593784_594054_+\|30S-ribosomal-protein-S15	unknown	unknown	gnl\|CDD\|180170
NZ_CP043773.1\|WP_001294027.1\|600942_601473_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP043773.1\|WP_149827155.1\|597530_597611_+\|protein-YrbN	unknown	unknown	gnl\|CDD\|380282
NZ_CP043773.1\|WP_000928379.1\|606620_606938_-\|GIY-YIG-nuclease-family-protein	unknown	unknown	gnl\|CDD\|178979
NZ_CP043773.1\|WP_000908562.1\|606130_606634_+\|N-acetyltransferase	unknown	unknown	gnl\|CDD\|225695
NZ_CP043773.1\|WP_000884721.1\|605612_606137_+\|SCP2-domain-containing-protein	unknown	unknown	gnl\|CDD\|225696
NZ_CP043773.1\|WP_000133064.1\|589389_592068_+\|translation-initiation-factor-IF-2	unknown	unknown	gnl\|CDD\|235401
NZ_CP043773.1\|WP_000130440.1\|602328_603336_-\|LLM-class-flavin-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|182505
NZ_CP043773.1\|WP_000089674.1\|592689_593634_+\|tRNA-pseudouridine(55)-synthase-TruB	unknown	unknown	gnl\|CDD\|235333
NZ_CP043773.1\|WP_102136059.1\|603413_603608_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP043773.1\|WP_000802069.1\|596540_597425_+\|lipoprotein-NlpI	unknown	unknown	gnl\|CDD\|236875
NZ_CP043773.1\|WP_001040208.1\|592288_592690_+\|30S-ribosome-binding-factor-RbfA	unknown	unknown	gnl\|CDD\|234787
NZ_CP043773.1\|WP_000224389.1\|599637_600882_+\|tryptophan-permease	unknown	unknown	gnl\|CDD\|182492
NZ_CP043773.1\|WP_001031038.1\|587862_589365_+\|transcription-termination/antitermination-protein-NusA	unknown	unknown	gnl\|CDD\|236410
NZ_CP043773.1\|WP_000421309.1\|604400_605396_-\|U32-family-peptidase	unknown	unknown	gnl\|CDD\|223896
NZ_CP043773.1\|WP_015899386.1\|585411_586821_-\|argininosuccinate-synthase	unknown	unknown	gnl\|CDD\|235434
NZ_CP043773.1\|WP_000105461.1\|587382_587835_+\|ribosome-maturation-factor-RimP	unknown	unknown	gnl\|CDD\|234627

Protein	Function_ID	Function_description	E-value
NZ_CP043773.1\|WP_000532745.1\|601631_602351_+\|murein-L,D-transpeptidase	gnl\|CDD\|225577	COG3034, COG3034, Uncharacterized protein conserved in bacteria [Function unknown].	1.17265e-108
NZ_CP043773.1\|WP_001540959.1\|603513_604410_-\|U32-family-peptidase	gnl\|CDD\|237968	PRK15447, PRK15447, putative protease; Provisional.	0
NZ_CP043773.1\|WP_001670767.1\|594295_596431_+\|polyribonucleotide-nucleotidyltransferase	gnl\|CDD\|236995	PRK11824, PRK11824, polynucleotide phosphorylase/polyadenylase; Provisional.	0
NZ_CP043773.1\|WP_000059465.1\|593784_594054_+\|30S-ribosomal-protein-S15	gnl\|CDD\|180170	PRK05626, rpsO, 30S ribosomal protein S15; Reviewed.	7.70279e-54
NZ_CP043773.1\|WP_149827155.1\|597530_597611_+\|protein-YrbN	gnl\|CDD\|380282	NF033440, small_YrbN, protein YrbN. YrbN, a small protein of only 26 amino acids, is found in at least these genera: Escherichia, Salmonella, Enterobacter, Klebsiella, and Yersinia. It is known to be expressed in E. coli.	1.06393e-08
NZ_CP043773.1\|WP_000928379.1\|606620_606938_-\|GIY-YIG-nuclease-family-protein	gnl\|CDD\|178979	PRK00329, PRK00329, GIY-YIG nuclease superfamily protein; Validated.	4.3214e-44
NZ_CP043773.1\|WP_000908562.1\|606130_606634_+\|N-acetyltransferase	gnl\|CDD\|225695	COG3153, COG3153, Predicted acetyltransferase [General function prediction only].	7.2703e-63
NZ_CP043773.1\|WP_000884721.1\|605612_606137_+\|SCP2-domain-containing-protein	gnl\|CDD\|225696	COG3154, COG3154, Putative lipid carrier protein [Lipid metabolism].	1.82299e-84
NZ_CP043773.1\|WP_000133064.1\|589389_592068_+\|translation-initiation-factor-IF-2	gnl\|CDD\|235401	PRK05306, infB, translation initiation factor IF-2; Validated.	0
NZ_CP043773.1\|WP_000130440.1\|602328_603336_-\|LLM-class-flavin-dependent-oxidoreductase	gnl\|CDD\|182505	PRK10508, PRK10508, luciferase-like monooxygenase.	0
NZ_CP043773.1\|WP_000089674.1\|592689_593634_+\|tRNA-pseudouridine(55)-synthase-TruB	gnl\|CDD\|235333	PRK05033, truB, tRNA pseudouridine synthase B; Provisional.	0
NZ_CP043773.1\|WP_000802069.1\|596540_597425_+\|lipoprotein-NlpI	gnl\|CDD\|236875	PRK11189, PRK11189, lipoprotein NlpI; Provisional.	0
NZ_CP043773.1\|WP_001040208.1\|592288_592690_+\|30S-ribosome-binding-factor-RbfA	gnl\|CDD\|234787	PRK00521, rbfA, 30S ribosome-binding factor RbfA.	2.271e-52
NZ_CP043773.1\|WP_000224389.1\|599637_600882_+\|tryptophan-permease	gnl\|CDD\|182492	PRK10483, PRK10483, tryptophan permease; Provisional.	0
NZ_CP043773.1\|WP_001031038.1\|587862_589365_+\|transcription-termination/antitermination-protein-NusA	gnl\|CDD\|236410	PRK09202, nusA, transcription elongation factor NusA; Validated.	0
NZ_CP043773.1\|WP_000421309.1\|604400_605396_-\|U32-family-peptidase	gnl\|CDD\|223896	COG0826, COG0826, Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones].	3.77757e-116
NZ_CP043773.1\|WP_015899386.1\|585411_586821_-\|argininosuccinate-synthase	gnl\|CDD\|235434	PRK05370, PRK05370, argininosuccinate synthase; Validated.	0
NZ_CP043773.1\|WP_000105461.1\|587382_587835_+\|ribosome-maturation-factor-RimP	gnl\|CDD\|234627	PRK00092, PRK00092, ribosome maturation protein RimP; Reviewed.	4.39218e-79

>NZ_CP043773.1|WP_149827155.1|597530_597611_+|protein-YrbN
MKIADQFYDELCRLAAINFEAHVLHG
>NZ_CP043773.1|WP_000802069.1|596540_597425_+|lipoprotein-NlpI
MKPFLRWCFVATALTLAGCSNSAWRKSEVLAVPLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPYRSLWLYLVEQKLNEKQAKEALKARFEKSDKEQWGWNIVEFYLGDISEATLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVEHRYALLELSLLGQDQDDLAESDQQ
>NZ_CP043773.1|WP_001670767.1|594295_596431_+|polyribonucleotide-nucleotidyltransferase
MLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVNYQERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPVRPLFPEGFVNEVQVIATVVSVNPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVAGTEAAVLMVESEAELLSEDTMLGAVVFGHEQQQVVIQAINDLVKEAGKPRWDWQPEAVNDALNARVAALAESRLSDAYRITDKQERYAQVDVIKSETIEQLIAEDETLDANELGEILHAIEKNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVLDELMGERTDSFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMDKFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLSDILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQAINAPRGDISEFAPRIHTIKISTDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATDGEKAKYAIRRIEEITAEIEVGRIYNGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQGRVRLSIKEATEQSQPAAAPEAPASEQAE
>NZ_CP043773.1|WP_000059465.1|593784_594054_+|30S-ribosomal-protein-S15
MSLSTEATAKIVSEFGRDANDTGSTDVQVALLTAQINHLQGHFAEHKKDHHSRRGLLRMVSQRRKLLDYLKRKDVARYTALIERLGLRR
>NZ_CP043773.1|WP_000089674.1|592689_593634_+|tRNA-pseudouridine(55)-synthase-TruB
MSRPRRRGRDIHGVLLLDKPQGMSSNDVLQKVKRIYNANRAGHTGALDPLATGMLPICLGEATKFSQYLLDSDKRYRVIARLGQRTDTSDADGQIVQERPVTFSAEQLASALETFRGDIEQIPSMYSALKYQGKKLYEYARQGIEVPREARPITVYELLFIRHEGNELELEVHCSKGTYIRTIIDDLGEKLGCGAHVTYLRRLTVSKYPVDRMVTLEHLQTLVAQAEQQGVPAAQLLDPLLMPMDSPASDYPVVNLPLTSSVYFKNGNPVRTTGAPLKGLVRVTEGEDDKFIGMGEIDDEGRVAPRRLVVEYPA
>NZ_CP043773.1|WP_001040208.1|592288_592690_+|30S-ribosome-binding-factor-RbfA
MAKEFGRPQRVAQEMQKEIALILQREIKDPRVGMMTTVSGVEMSRDLAYAKVFVTFLNDQDEAAVKNGIKALQEASGFIRSLLGKAMRLRIVPELTFFYDNSLVEGMRMSNLVTNVVKHDEERRVNPDDSKED
>NZ_CP043773.1|WP_000133064.1|589389_592068_+|translation-initiation-factor-IF-2
MTDVTLKALAAERQVSVDRLVQQFADAGIRKSADDSVSAQEKQTLLAHLNREAVSGPDKLTLQRKTRSTLNIPGTGGKSKSVQIEVRKKRTFVKRDPQEAERLAAEEQAQREAEEQARREAEEQAKREAQQKAEREAAEQAKREAAEKAKREAAEKDKVSNQQTDDMTKTAQAEKARRENEAAELKRKAEEEARRKLEEEARRVAEEARRMAEENKWTATPEPVEDTSDYHVTTSQHARQAEDENDREVEGGRGRGRNAKAARPAKKGKHAESKADREEARAAVRGGKGGKRKGSSLQQGFQKPAQAVNRDVVIGETITVGELANKMAVKGSQVIKAMMKLGAMATINQVIDQETAQLVAEEMGHKVILRRENELEEAVMSDRDTGAAAEPRAPVVTIMGHVDHGKTSLLDYIRSTKVASGEAGGITQHIGAYHVETDNGMITFLDTPGHAAFTSMRARGAQATDIVVLVVAADDGVMPQTIEAIQHAKAAGVPVVVAVNKIDKPEADPDRVKNELSQYGILPEEWGGESQFVHVSAKAGTGIDELLDAILLQAEVLELKAVRKGMASGAVIESFLDKGRGPVATVLVREGTLHKGDIVLCGFEYGRVRAMRNELGQEVLEAGPSIPVEILGLSGVPAAGDEVTVVRDEKKAREVALYRQGKFREVKLARQQKSKLENMFANMTEGEVHEVNIVLKADVQGSVEAISDSLLKLSTDEVKVKIIGSGVGGITETDATLAAASNAILVGFNVRADASARKVIESESLDLRYYSVIYNLIDEVKAAMSGMLSPELKQQIIGLAEVRDVFKSPKFGAIAGCMVTEGTIKRHNPIRVLRDNVVIYEGELESLRRFKDDVNEVRNGMECGIGVKNYNDVRVGDMIEVFEIIEIQRTIA
>NZ_CP043773.1|WP_001031038.1|587862_589365_+|transcription-termination/antitermination-protein-NusA
MNKEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEIDVRVEIDRKSGDFDTFRRWLIVEEVTMPTKEITLEAARFEDESLNVGDYVEDQIESVTFDRITTQTAKQVIVQKVREAERAMVVDQFRDQEGEIVTGVVKKVNRDNISLEIKSEGMAGNAEAVILREDMLPRENFRPGDRIRGVLYAVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIAVKTNDKRIDPVGACVGMRGARVQAVSTELGGERIDIVLWDDNPAQFVINAMAPADVASIVVDEDKHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAKHQAEAHAAIEIFTKYLDIDEEFATVLVEEGFSTLEELAYVPMKELLEIDGLDEPTVEALRERAKNALATLAQDQEASLGDNKPADDLLNLEGLDRDMAFKLAARGVCTLEDLADQGIDDLADIEGLTDEKAGELIMAARNICWFGDEA
>NZ_CP043773.1|WP_000105461.1|587382_587835_+|ribosome-maturation-factor-RimP
MSTLEQKLTEMITAPVEALGYELVGIEFIRGRTSTLRIYIDSEDGINVDDCADVSHQVSAVLDVEDPISVAYNLEVSSPGLDRPMFTADHYARFQGEEVALVLRMAVQNRRKWQGIIKAVDGEMITVTVEGKDEVFALSNIQKANLVPHF
>NZ_CP043773.1|WP_015899386.1|585411_586821_-|argininosuccinate-synthase
MHKNALKQKPISLSVNQAGFYSMTTILKHLPAGQRIGIAFSGGLDTSAALLWMRQKGAVPYAYTANLGQPDEDDYDAIPRRAMEYGAENARLIDCRKQLVAEGIAAIQCGAFHNTTGGLTYFNTTPLGRAVTGTMLVAAMKEDGVNIWGDGSTYKGNDIERFYRYGLLTNAELQIYKPWLDTDFIDELGGRHEMSEFMIACGFDYKMSVEKAYSTDSNMLGATHEAKDLEFLNSSVKIVNPIMGVKFWDESVKIPAEEVTVRFEQGHPVALNDKTFSDDVEMMLEANRIGGRHGLGMSDQIENRIIEAKSRGIYEAPGMALLHIAYERLLTGIHNEDTIEQYHSHGRQLGKLLYQGRWFDSQALMLRDGLQRWVASQITGEVTLELRRGNDYSILNTVSDNLTYKAERLTMEKGESVFSPDDRIGQLTMRNLDITDTREKLFGYAKAGLLTASSATGLPQVENLENKAK
>NZ_CP043773.1|WP_000224389.1|599637_600882_+|tryptophan-permease
MATLTTTQTSPSLLGGVVIIGGTIIGAGMFSLPVVMSGAWFFWSMAALVFTWFCMLHSGLMILEANLNYRIGSSFDTITKDLLGKGWNVVNGISIAFVLYILTYAYISASGSILHHTFAEMSLNVPARAAGFAFALLVAFVVWLSTKAVSRMTAIVLGAKVITFFLTFGSLLGHVQPATLFNVAESHASYTPYLLMTLPFCLASFGYHGNVPSLMKYYGKDPRTIVKCLIYGTLLALALYSVWLLGTMGNIPRQEFIGIAQKGGNIDVLVQALSGVLNSRSLDLLLVVFSNFAVASSFLGVTLGLFDYLADLFGFDDSAMGRFKTALLTFVPPIVGGLLYPNGFLYAIGYAGLAATIWAAIVPALLARKSRKRFGSPKFRVWGGKPMIVLILLFGVGNALVHILSSFNLLPVYQ
>NZ_CP043773.1|WP_001294027.1|600942_601473_-|hypothetical-protein
MSEPASFFLHAHITESNLKKFFHSPATNIKDYDDWLPWFTEEQRLYGDPAKMLNNLATCNSGESEKNIYAEHINFNKETQIVTMDHIFLSESYEIFMPLMACVRGIEKFITPGENNFALIYYYWWGSEIAIALEFDANGSRITANPKAENLTIADAFFDEHGEALAEELYNKQGFI
>NZ_CP043773.1|WP_000532745.1|601631_602351_+|murein-L,D-transpeptidase
MGRKGLLAIVLLSLFIAFILKFFWLTPYDEDVYLPVEKPVASSLKIIHPGDQLFIRILKAEDKLELWASANNKPYKLYKTWTICAWSGGLGPKHKQGDGKSPEGFYATNKGLLNPNSRYHLAFNIGYPNAYDRANGYTGDFIMVHGNCVSAGCYAMTDAGIEEIYQLVAQALNSGQKSVPVHIFPFTMNDENMRQAQAWPEYNFWRMLKPGYDYFEKNRRLPTITVENRRYKISPTTLP
>NZ_CP043773.1|WP_000130440.1|602328_603336_-|LLM-class-flavin-dependent-oxidoreductase
MTDKTIPFSVLDLAPIPEGSSAKEAFTHSLDLARLAEKRGYHRYWLAEHHNMTGIASAATSVLIGYLAANTTTLHLGSGGVMLPNHSPLVIAEQFGTLNTLYPGRIDLGLGRAPGSDQPTMRALRRHMSGDIDNFPRDVAELVDWFDARDPNPHVRPVPGYGEQVPVWLLGSSLYSAQLAAQLGLPFAFASHFAPDMLFQALHLYRTQFKPSARLEKPYAMVCINIIAADSNRDAEFLFTSMQQAFVKLRRGETGQLPPPIENMETFWSPSEQYGVQQALSMSLVGDKAKVRHGLESILRETQADEIMVNGQIFDHQARLHSFDLAMDVKEELLG
>NZ_CP043773.1|WP_102136059.1|603413_603608_+|hypothetical-protein
MRLTVKTIPDGAALIRPTGSLFVGQIRYLCRHPARPVAPARPAASSSRYSRYGRQAVMVRRRFR
>NZ_CP043773.1|WP_001540959.1|603513_604410_-|U32-family-peptidase
MAVRGAMKYSLGPVLYYWPKETLEDFYQQAAKSSADVIYLGEAVCSKRRATKVGDWLEMAKSLAASGKQVALSTLALVQASSELSELKRYVDNGDFLLEASDLGVVNLCAERKLPFVAGHALNCYNAVTLRRLLKEGMVRWCMPVELSRDWLVNLLNQCDELGIRNQFEVEVLSYGHLPLAYSARCFTARSEDRPKDECETCCIKYPNGRDVLSQENQQVFVLNGIQTMSGYVYNLGNELTSMQGLVDIVRLSPLGTETFAMLDAFRANENGGAPLPLAAHSDCNGYWKRLAGLELQA
>NZ_CP043773.1|WP_000421309.1|604400_605396_-|U32-family-peptidase
MELLCPAGNLPALKAAIENGADAVYIGLKDDTNARHFAGLNFTEKKLQEAVSFVHQHRRKLHIAINTFAHPDGYARWQRAVDMAAQLGADALILADLAMLEYAAERYPHIERHVSVQASATNEEAIRFYHRNFDVHRVVLPRVLSIHQVKQLARVTPVPLEVFAFGSLCIMAEGRCYLSSYLTGESPNTVGACSPARFVRWQQTPQGLESRLNDVLIDRYQDGENAGYPTLCKGRYLVDGERYHALEEPTSLNTLELLPELMAANIASVKIEGRQRSPAYVSQVAKVWRQAIDRCKAAPQNFVPQRDWMETLGAMSEGTQTTLGAYHRKWQ
>NZ_CP043773.1|WP_000884721.1|605612_606137_+|SCP2-domain-containing-protein
MLDKLRSRLVHAGPSLMSVPVKLTPFALKRQVLEQVLSWQFRQALADGELEFLEGRWLSIHVRDIDLKWYTTVENEKLIVSQQADADVSFSADASDLLMIAARKQDPDTLFFQRRLVIEGDTELGLYVKNLMDAIELEQMPKALRVMLLQLADFVEAGMKNSPETKQTSVGEPC
>NZ_CP043773.1|WP_000908562.1|606130_606634_+|N-acetyltransferase
MLIRVEIPIDAPGIDALLRRSFESDAEAKLVHDLREDGFLTLGLVATDDEGQVVGYVAFSPVDVQGEDLQWVGMAPLAVDEKYRGQGLARQLVYEGLDSLNEFGYAAVVTLGDPALYSRFGFELAAHYDLHCRWPGTESAFQVHRLAEDALEGVTGLVEYHDHFNRF
>NZ_CP043773.1|WP_000928379.1|606620_606938_-|GIY-YIG-nuclease-family-protein
MLMATMTPWYLYLIRTADNALYTGITTDVARRYRQHQTGKGAKALRGKGELTLAFAAQVGDRSLALRIEYRIKQLTKRQKERLVTEREAFEALLSSLQTPVLKND

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Crispr_ID: NZ_CP043773_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP043773_2

952096-952795

TypeI-E

I-E

Consensus_repeat	Method
GTGTTCCCCGCGCCAGCGGGGATAAACCG	PILER-CR
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CRISPRCasFinder
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CRT

11 spacers

cas3,cas8e,cse2gr11

The CRISPR arrays of NZ_CP043773_2

>merge|NZ_CP043773|2|952096-952795|PILER-CR,CRISPRCasFinder,CRT
GTGTTCCCCGCGCCAGCGGGGATAAACCGCGAAAATGCTTTGTATTGTCCATTGGCACACCGTGTTCCCCGCGCCAGCGGGGATAAACCGCTGTAATGCCTGAGCATTGCAGCCGGTTAGATGTGTTCCCCGCGCCAGCGGGGATAAACCGGCCATCGACGGACAAGAAAACCCACCGGAAGAGTGTTCCCCGCGCCAGCGGGGATAAACCGTAATAACGCCAGCTCACATTGGCACTGGCGCGGTGTTCCCCGCGCCAGCGGGGATAAACCGAAATTAGTAGTCATTTTGAAACCCTTAGTGGTGTGTTCCCCGCGCCAGCGGGGATAAACCGGCTCAAAACTCGGATGGTATAGGCGTGGCGCAGTGTTCCCCGCGCCAGCGGGGATAAACCGACGCGTTAAAACTGCGCTCAATGCAGACGGCCGTGTTCCCCGCACCAGCGGGGATAAACCGGCCCGCCTGTCGCTGTACGCCGGGGCGGCATAGTGTTCCCCGCGCCAGCGGGGATAAACTGCCATAAGAGCATCCCCGCCATCCGGAGGGGAAGTGTTCCCCTCGCCAGCGGGGATAAACCGAGTTACTGATGCAGACTGCGGATCTTAATCGGGTGTTCCCCGCGCCAGCGGGGATAAACCGTGCGCCAACGACTGGAATTTTTGCGTGTAGCCGTGTTCCCCGCGCCAACAAGGATAGCCGT

>NZ_CP043773|2|1|952096-952734|PILER-CR
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGAAAATGCTTTGTATTGTCCATTGGCACACC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CTGTAATGCCTGAGCATTGCAGCCGGTTAGAT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCCATCGACGGACAAGAAAACCCACCGGAAGA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TAATAACGCCAGCTCACATTGGCACTGGCGCG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AAATTAGTAGTCATTTTGAAACCCTTAGTGGT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCTCAAAACTCGGATGGTATAGGCGTGGCGCA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ACGCGTTAAAACTGCGCTCAATGCAGACGGCC
GTGTTCCCCGCACCAGCGGGGATAAACCG	GCCCGCCTGTCGCTGTACGCCGGGGCGGCATA
GTGTTCCCCGCGCCAGCGGGGATAAACTG	CCATAAGAGCATCCCCGCCATCCGGAGGGGAA
GTGTTCCCCTCGCCAGCGGGGATAAACCG	AGTTACTGATGCAGACTGCGGATCTTAATCGG
GTGTTCCCCGCGCCAGCGGGGATAAACCG

>NZ_CP043773|2|2|952096-952795|CRISPRCasFinder
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGAAAATGCTTTGTATTGTCCATTGGCACACC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CTGTAATGCCTGAGCATTGCAGCCGGTTAGAT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCCATCGACGGACAAGAAAACCCACCGGAAGA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TAATAACGCCAGCTCACATTGGCACTGGCGCG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AAATTAGTAGTCATTTTGAAACCCTTAGTGGT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCTCAAAACTCGGATGGTATAGGCGTGGCGCA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ACGCGTTAAAACTGCGCTCAATGCAGACGGCC
GTGTTCCCCGCACCAGCGGGGATAAACCG	GCCCGCCTGTCGCTGTACGCCGGGGCGGCATA
GTGTTCCCCGCGCCAGCGGGGATAAACTG	CCATAAGAGCATCCCCGCCATCCGGAGGGGAA
GTGTTCCCCTCGCCAGCGGGGATAAACCG	AGTTACTGATGCAGACTGCGGATCTTAATCGG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TGCGCCAACGACTGGAATTTTTGCGTGTAGCC
GTGTTCCCCGCGCCAACAAGGATAGCCGT

>NZ_CP043773|2|1|952096-952795|CRT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGAAAATGCTTTGTATTGTCCATTGGCACACC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CTGTAATGCCTGAGCATTGCAGCCGGTTAGAT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCCATCGACGGACAAGAAAACCCACCGGAAGA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TAATAACGCCAGCTCACATTGGCACTGGCGCG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AAATTAGTAGTCATTTTGAAACCCTTAGTGGT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCTCAAAACTCGGATGGTATAGGCGTGGCGCA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ACGCGTTAAAACTGCGCTCAATGCAGACGGCC
GTGTTCCCCGCACCAGCGGGGATAAACCG	GCCCGCCTGTCGCTGTACGCCGGGGCGGCATA
GTGTTCCCCGCGCCAGCGGGGATAAACTG	CCATAAGAGCATCCCCGCCATCCGGAGGGGAA
GTGTTCCCCTCGCCAGCGGGGATAAACCG	AGTTACTGATGCAGACTGCGGATCTTAATCGG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TGCGCCAACGACTGGAATTTTTGCGTGTAGCC
GTGTTCCCCGCGCCAACAAGGATAGCCGT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP043773.1\|WP_000210926.1\|955880_957680_+\|NADPH-dependent-assimilatory-sulfite-reductase-flavoprotein-subunit	unknown	unknown	gnl\|CDD\|182862
NZ_CP043773.1\|WP_110161803.1\|952844_954100_-\|IS3-like-element-ISSen1-family-transposase	unknown	unknown	gnl\|CDD\|222853
NZ_CP043773.1\|WP_000210451.1\|946945_947746_+\|nucleoside-triphosphate-pyrophosphohydrolase	unknown	unknown	gnl\|CDD\|236569
NZ_CP043773.1\|WP_001199961.1\|951127_951799_+\|7-carboxy-7-deazaguanine-synthase-QueE	unknown	unknown	gnl\|CDD\|275126
NZ_CP043773.1\|WP_001044459.1\|942186_942960_-\|fimbria/pilus-periplasmic-chaperone	unknown	unknown	gnl\|CDD\|185177
NZ_CP043773.1\|WP_000842512.1\|945751_946339_-\|fimbrial-protein	unknown	unknown	gnl\|CDD\|185169
NZ_CP043773.1\|WP_024131732.1\|960289_961243_-\|SPI-1-type-III-secretion-system-effector-SopD	unknown	unknown	gnl\|CDD\|185277
NZ_CP043773.1\|WP_000029744.1\|961687_964351_+\|CRISPR-associated-helicase/endonuclease-Cas3	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|224124
NZ_CP043773.1\|WP_001540809.1\|959467_960202_+\|phosphoadenosine-phosphosulfate-reductase	unknown	unknown	gnl\|CDD\|234997
NZ_CP043773.1\|WP_000178258.1\|941660_942167_-\|fimbrial-protein	unknown	unknown	gnl\|CDD\|185178
NZ_CP043773.1\|WP_000210863.1\|947973_949611_+\|CTP-synthase-(glutamine-hydrolyzing)	unknown	unknown	gnl\|CDD\|235437
NZ_CP043773.1\|WP_000036734.1\|949693_950992_+\|phosphopyruvate-hydratase	unknown	unknown	gnl\|CDD\|234617
NZ_CP043773.1\|WP_000368587.1\|964362_965922_+\|type-I-E-CRISPR-associated-protein-Cse1/CasA	cas8e	cd09669_cas8e_CAS-I-E	gnl\|CDD\|274192
NZ_CP043773.1\|WP_000029526.1\|965918_966467_+\|type-I-E-CRISPR-associated-protein-Cse2/CasB	cse2gr11	cd09731_cse2gr11_CAS-I-E	gnl\|CDD\|187862
NZ_CP043773.1\|WP_001079644.1\|940642_941179_-\|fimbrial-protein	unknown	unknown	gnl\|CDD\|185168
NZ_CP043773.1\|WP_000832396.1\|941175_941646_-\|fimbrial-protein	unknown	unknown	gnl\|CDD\|185179
NZ_CP043773.1\|WP_001540810.1\|954207_955005_+\|MBL-fold-metallo-hydrolase	unknown	unknown	gnl\|CDD\|224158
NZ_CP043773.1\|WP_000108313.1\|955094_955457_-\|6-carboxytetrahydropterin-synthase-QueD	unknown	unknown	gnl\|CDD\|238264
NZ_CP043773.1\|WP_001290656.1\|957679_959392_+\|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit	unknown	unknown	gnl\|CDD\|237402
NZ_CP043773.1\|WP_000981804.1\|942972_945672_-\|fimbrial-biogenesis-outer-membrane-usher-protein	unknown	unknown	gnl\|CDD\|185176

Protein	Function_ID	Function_description	E-value
NZ_CP043773.1\|WP_000210926.1\|955880_957680_+\|NADPH-dependent-assimilatory-sulfite-reductase-flavoprotein-subunit	gnl\|CDD\|182862	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit.	0
NZ_CP043773.1\|WP_110161803.1\|952844_954100_-\|IS3-like-element-ISSen1-family-transposase	gnl\|CDD\|222853	PHA02517, PHA02517, putative transposase OrfB; Reviewed.	4.12402e-41
NZ_CP043773.1\|WP_000210451.1\|946945_947746_+\|nucleoside-triphosphate-pyrophosphohydrolase	gnl\|CDD\|236569	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed.	3.42454e-158
NZ_CP043773.1\|WP_001199961.1\|951127_951799_+\|7-carboxy-7-deazaguanine-synthase-QueE	gnl\|CDD\|275126	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE. Members of this radical SAM domain protein family appear to be the E. coli form of the queuosine biosynthesis protein QueE. QueE is involved in making preQ0 (7-cyano-7-deazaquanine), a precursor of both the bacterial/eukaryotic modified tRNA base queuosine and the archaeal modified base archaeosine. Members occur in species that lack known forms of QueE but usually are not found in queuosine biosynthesis operons. Members of this family tend to form bi-directional best hit matches to members of known (TIGR03365) and putative (TIGR03963) QueE families from other lineages.	1.43874e-155
NZ_CP043773.1\|WP_001044459.1\|942186_942960_-\|fimbria/pilus-periplasmic-chaperone	gnl\|CDD\|185177	PRK15274, PRK15274, putative periplasmic fimbrial chaperone protein SteC; Provisional.	0
NZ_CP043773.1\|WP_000842512.1\|945751_946339_-\|fimbrial-protein	gnl\|CDD\|185169	PRK15261, PRK15261, fimbrial protein SteA; Provisional.	5.36845e-100
NZ_CP043773.1\|WP_024131732.1\|960289_961243_-\|SPI-1-type-III-secretion-system-effector-SopD	gnl\|CDD\|185277	PRK15379, PRK15379, type III secretion system effector SopD.	0
NZ_CP043773.1\|WP_000029744.1\|961687_964351_+\|CRISPR-associated-helicase/endonuclease-Cas3	gnl\|CDD\|224124	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms].	0
NZ_CP043773.1\|WP_001540809.1\|959467_960202_+\|phosphoadenosine-phosphosulfate-reductase	gnl\|CDD\|234997	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase.	1.32701e-138
NZ_CP043773.1\|WP_000178258.1\|941660_942167_-\|fimbrial-protein	gnl\|CDD\|185178	PRK15275, PRK15275, putative fimbrial protein SteD; Provisional.	1.6337e-105
NZ_CP043773.1\|WP_000210863.1\|947973_949611_+\|CTP-synthase-(glutamine-hydrolyzing)	gnl\|CDD\|235437	PRK05380, pyrG, CTP synthetase; Validated.	0
NZ_CP043773.1\|WP_000036734.1\|949693_950992_+\|phosphopyruvate-hydratase	gnl\|CDD\|234617	PRK00077, eno, enolase; Provisional.	0
NZ_CP043773.1\|WP_000368587.1\|964362_965922_+\|type-I-E-CRISPR-associated-protein-Cse1/CasA	gnl\|CDD\|274192	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model family, represented by CT1972 from Chlorobium tepidum, is found in Ecoli subtype CRISPR/Cas regions of many bacteria, most of which are mesophiles, and not in Archaea. It is designated Cse1.	2.75345e-173
NZ_CP043773.1\|WP_000029526.1\|965918_966467_+\|type-I-E-CRISPR-associated-protein-Cse2/CasB	gnl\|CDD\|187862	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Small alpha-helical protein; also known as Cse2/CasB/YgcK family; specific gene for I-E subtype;.	8.80691e-33
NZ_CP043773.1\|WP_001079644.1\|940642_941179_-\|fimbrial-protein	gnl\|CDD\|185168	PRK15260, PRK15260, fimbrial protein SteF; Provisional.	3.83046e-121
NZ_CP043773.1\|WP_000832396.1\|941175_941646_-\|fimbrial-protein	gnl\|CDD\|185179	PRK15276, PRK15276, putative fimbrial subunit SteE; Provisional.	1.41178e-100
NZ_CP043773.1\|WP_001540810.1\|954207_955005_+\|MBL-fold-metallo-hydrolase	gnl\|CDD\|224158	COG1237, COG1237, Metal-dependent hydrolases of the beta-lactamase superfamily II [General function prediction only].	1.65501e-102
NZ_CP043773.1\|WP_000108313.1\|955094_955457_-\|6-carboxytetrahydropterin-synthase-QueD	gnl\|CDD\|238264	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS). Folate derivatives are essential cofactors in the biosynthesis of purines, pyrimidines, and amino acids, as well as formyl-tRNA. Mammalian cells are able to utilize pre-formed folates after uptake by a carrier-mediated active transport system. Most microbes and plants lack this system and must synthesize folates de novo from guanosine triphosphate. One enzyme from this pathway is PTPS which catalyzes the conversion of dihydroneopterin triphosphate to 6-pyruvoyl tetrahydropterin. The functional enzyme is a hexamer of identical subunits.	2.78454e-58
NZ_CP043773.1\|WP_001290656.1\|957679_959392_+\|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit	gnl\|CDD\|237402	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit.	0
NZ_CP043773.1\|WP_000981804.1\|942972_945672_-\|fimbrial-biogenesis-outer-membrane-usher-protein	gnl\|CDD\|185176	PRK15273, PRK15273, fimbrial biogenesis outer membrane usher protein.	0

>NZ_CP043773.1|WP_001199961.1|951127_951799_+|7-carboxy-7-deazaguanine-synthase-QueE
MQYPINEMFQTLQGEGYFTGVPAIFIRLQGCPVGCAWCDTKHTWDKLSDREVSLFSILAKTKESDKWGAASSEDLLAVINRQGYTARHVVITGGEPCIHDLMPLTDLLEKSGFSCQIETSGTHEVRCTPNTWVTVSPKVNMRGGYDVLSQALERANEIKHPVGRVRDIEALDELLATLSDDKPRVIALQPISQKEDATRLCIETCIARNWRLSMQTHKYLNIA
>NZ_CP043773.1|WP_000036734.1|949693_950992_+|phosphopyruvate-hydratase
MSKIVKVIGREIIDSRGNPTVEAEVHLEGGFVGMAAAPSGASTGSREALELRDGDKSRFLGKGVTKAVGAVNGPIAQAILGKDAKDQAGIDKIMIDLDGTENKSNFGANAILAVSLANAKAAAAAKGMPLYEHIAELNGTPGKYSMPVPMMNIINGGEHADNNVDIQEFMIQPVGAKTVKEAIRMGSEVFHHLAKVLKGKGMNTAVGDEGGYAPNLGSNAEALAVIAEAVKAAGYELGKDITLAMDCAASEFYKDGKYVLAGEGNKAFTSEEFTHFLEELTKQYPIVSIEDGLDESDWDGFAYQTKVLGDKIQLVGDDLFVTNTKILKEGIEKGIANSILIKFNQIGSLTETLAAIKMAKDAGYTAVISHRSGETEDATIADLAVGTAAGQIKTGSMSRSDRVAKYNQLIRIEEALGEKAPYNGRKEIKGQA
>NZ_CP043773.1|WP_000210863.1|947973_949611_+|CTP-synthase-(glutamine-hydrolyzing)
MTTNYIFVTGGVVSSLGKGIAAASLAAILEARGLNVTIMKLDPYINVDPGTMSPIQHGEVFVTEDGAETDLDLGHYERFIRTKMSRRNNFTTGRIYSDVLRKERRGDYLGATVQVIPHITNAIKERVLEGGEGHDVVLVEIGGTVGDIESLPFLEAIRQLAVDIGREHALFMHLTLVPYLAAAGEVKTKPTQHSVKELLSIGIQPDILICRSDRAVPANERAKIALFCNVPEKAVISMKDVDSIYKIPGLLKSQGLDDYICKRFSLNCPEANLSEWEQVIYEEANPAGEVTIGMVGKYIELPDAYKSVIEALKHGGLKNRVTVNIKLIDSQDVETRGVEILKDLDAILIPGGFGYRGVEGKIATARYARENNIPYLGICLGMQVALIEFARNVAGMDNANSTEFVPDCKYPVVALITEWRDEDGNVEVRSEKSDLGGTMRLGAQQCQLSDDSLVRQLYGASTIVERHRHRYEVNNMLLKQIEAAGLRVAGRSGDDQLVEIIEVPNHPWFVACQFHPEFTSTPRDGHPLFAGFVKAANEHQKRQAK
>NZ_CP043773.1|WP_000210451.1|946945_947746_+|nucleoside-triphosphate-pyrophosphohydrolase
MTTNHQIDRLLTLMQRLRDPENGCPWDKEQTFASIAPYTLEETYEVLDAIAREDFDDLRGELGDLLFQVVFYAQMAQEEGRFDFNDICAAISDKLERRHPHVFGELSADNSEEALVRWEQIKTEERAQKAQHSALDDIPRSLPALMRAQKIQKRCSNVGFDWTTLGPVVDKVYEEIDEVMFEARQAVVDQAKLEEEMGDLLFATVNMARHLGTKAELALQKANDKFERRFREVERIVAARGLEMTGVDLETMEEVWQEVKRQEIDL
>NZ_CP043773.1|WP_000842512.1|945751_946339_-|fimbrial-protein
MKSSHFCKLAVTASLVMGIVSGAQAAGSNTAKVTFLGNIVDSPCSVTLDTEDQTVNMGSSIGNGTLSNGKTTINNARTFHIDLEGCTWATEKNMNVVFTTGSGTTAATGATDNLALMKTDGTGAISNVSLAIGDAGKNNIKLGDTYTQAIADLDGDTILDEKQSLNFTAWLVGAATGTVGTGEFSSAANVTISYL
>NZ_CP043773.1|WP_000981804.1|942972_945672_-|fimbrial-biogenesis-outer-membrane-usher-protein
MMNNTWKSVLCPIACGVGMLLSVSPYSASGKDIEFNTDFLDVKNRDNVNIAQFSRKGFILPGVYLLQIKINGQTLPQEFPVNWVIPEHDPQGSEVCAEPELVTQLGIKPELAEKLVWITHGERQCLAPDSLKGMDFQADLGHSTLLVNLPQAYMEYSDVDWDPPARWDNGIPGIILDYNINNQLRHDQESGSEEQSISGNGTLGANLGAWRLRADWQASYDHRDDDENTSTLHDQSWSRYYAYRALPTLGAKLTLGESYLQSDVFDSFNYIGASVVSDDQMLPPKLRGYAPEIVGIARSNAKVKVSWQGRVLYETQVPAGPFRIQDLNQSVSGTLHVTVEEQNGQTQEFDVNTASVPFLTRPGMVRYKMALGRPQDWDHHPITGTFASAEASWGVTNGWSLYGGAIGESNYQAVALGSGKDLGVVGAVAVDITHSIAHMPQDDGFDGETLQGNSYRISYSRDFDEIDSRLTFAGYRFSEKNFMSMSDYLDAKTYHHLNAGHEKERYTVTYNQNFREQGMSAYFSYSRSTFWDSPDQSNYNLSLSWYFDLGSIKNLSASLNGYRSEYNGDKDDGVYISLSVPWGNDSISYNGTFNGSQHRNQLGYSGHSQNGDNWQLHVGQDEQGAQADGYYSHQGALTDIDLSADYEEGSYRSLGMSLRGGMTLTTQGGALHRGSLAGSTRLLVDTDGIADVPVSGNDSPTSTNIFGKAVIADVGSYSRSLARIDLNKLPEKAEATKSVVQITLTEGAIGYRHFDVVSGEKMMAVFRLADGDFPPFGAEVKNERQQQLGLVANDGNAWLAGVKAGETLKVFWDGAAQCEASLPPTFTPELLANALLLPCKILEGQPPTAPQKSSPLPAQPLIQEHTQTDGQPAAPVATTTQTPPIPLADNHAVNRKDME
>NZ_CP043773.1|WP_001044459.1|942186_942960_-|fimbria/pilus-periplasmic-chaperone
MNKTNHFKRQALIASVLLAAPLVSHSAIVPDRTRVIFNGNENSITVTLKNGNATLPYLAQAWLEDDKFAKDTRYFTALPPLQRIEPKSDGQVKVQPLPAAASLPQDRESLFYFNVREIPPKSDKPNTLQLALQTRIKFFYRPVAVARQVDKTHPWQTKLTLTYQGDGVIFDNPTPFYLVISNAGSKENETASGFKNLLIAPREKVTSPIKGASLGSSPVVGYVDDYGGHRLLVFTCSGNTCKVNEEKTRDAEKKANK
>NZ_CP043773.1|WP_000178258.1|941660_942167_-|fimbrial-protein
MTMLTRWKILVLLCGGFVTGTEAAGTKTVQLELHLVVTQPPPCTIGGASVEFGDVLTTKVGDASQTKPVGYSLNCDGRASDYLKLQIQGTTTTISGEQVLQTSVQGLGIRIQQAGNKQLVPVGITDWLNFTLSGSNGPELEAVPVKEPTTQLAGGDFNASATLVVDYQ
>NZ_CP043773.1|WP_000832396.1|941175_941646_-|fimbrial-protein
MKRVLILTLLITQFACADNLTFHGKLINPPACTINNGETLEVSFGSVIIDNIDGVNYLTEIPWTLTCDSSFRDDALTFTLSYLGTATPYSANALTTNVPELGIELQQNGTVFPPGTSLTIDESSLPTLKAVPVKQPGKEPAEGDFEAFATLQVDYQ
>NZ_CP043773.1|WP_001079644.1|940642_941179_-|fimbrial-protein
MNRIFQTAGHLIGGVMLWAVCNTLPAATPNVHYSGKLVAGACNLVVDNDTMATVDFHTIGSDNFDASGQTTPVPFTLSLQDCKTALANGVLVTFQGIEDSTLPGLLALEPSSEASGFAIGVEMAAQQPVSINATVGTAFVLKEGITTINLQARLQKYAGEEVMPGEFSGSATVSFEYQ
>NZ_CP043773.1|WP_110161803.1|952844_954100_-|IS3-like-element-ISSen1-family-transposase
MMTEFKRTQRDYPLSFKIAVVEQVEKGEMTYKQAQQRYGIQGRSTVLVWLRKYGRLDWRPGLPDLVKRKLPVAQTTIPLTPEQRIRELEEQLELANQKAEFFESVINVLKNDYGVSVGKKAARQVLTQSQAPKITVTRACQFLGHSRQAWYQYNTRCNKRQEHHAQVLDFVARTRCRQPRIGTRKLHYLLNMQADKTLNIGRDRLFNLLGEYRLLVPVKRAYHKTTNSHHRFYRHPNLLKPGPEQVTALEPEQVWVADITYLPLRSGTAYLSLITDACSRKIVGYHVGENLQTENVVKAFRQALRRRKTTGPLVHHSDRGLQYCSVLYQSVHERNGITCSMTDGYDCYQNALAERINGILKNEFLLSRPADLEQAREIVKESVAIYNHERPHQALKYKTPDDVHQAFYRQKTVNLYQD
>NZ_CP043773.1|WP_001540810.1|954207_955005_+|MBL-fold-metallo-hydrolase
MALRIRVLLENHKGAGADKSLKARPGLSLLVEDESTSILFDTGPDGSFMQNALAMGIDLSDVSAVVLSHGHYDHCGGVPWLPDNSRIICHPDIARERYAAMTFLGITRKIKKLSCEVDYSRYRMMYTRDPLPIGENFIWSGEIPVVAPEAYGIFGGHDAEPDSILDEGVLIYQSTKGLVIITGCGHRGIANIVRHCQNITGIKRIYALVGGFHLRCASPFTLWRVRRFLQEHKPEKLCGCHCTGAWGRLWLPEITAPATGDVLRF
>NZ_CP043773.1|WP_000108313.1|955094_955457_-|6-carboxytetrahydropterin-synthase-QueD
MSTTLYKDFTFEAAHRLPHVPEGHKCGRLHGHSFMVRLEITGEVDPHTGWIMDFADLKAAFKPTYDRLDHYYLNDIPGLSNPTSEVLAKWIWDQVKPVVPLLSAVMVKETCTAGCVYRGE
>NZ_CP043773.1|WP_000210926.1|955880_957680_+|NADPH-dependent-assimilatory-sulfite-reductase-flavoprotein-subunit
MTTPAPLTGLLPLNPEQLARLQAATTDLTPEQLAWVSGYFWGVLNPRSGAVAVTPVPERKMPGVTLISASQTGNARRVAEALRDDLLAANLNVTLVNAGDYKFKQIASEKLLVIVTSTQGEGEPPEEAVALHKFLFSKKAPKLENTAFAVFSLGDTSYEFFCQSGKDFDSKLAELGGERLLDRVDADVEYQAAASEWRARVVDVLKSRAPVAAPSQSVATGAVNDIHTSPYTKDAPLIATLSVNQKITGRNSEKDVRHIEIDLGDSGLRYQPGDALGVWYQNDPALVKELVELLWLKGDEPVTVDGKTLPLAEALEWHFELTVNTANIVENYATLTRSESLLPLVGDKAQLQHYAATTPIVDMVRFSPAQLDAEALIGLLRPLTPRLYSIASAQAEVESEVHVTVGVVRYDIEGRARAGGASSFLADRVEEEGEVRVFIEHNDNFRLPANPQTPVIMIGPGTGIAPFRAFMQQRAAEGAEGKNWLFFGNPHFTEDFLYQVEWQRYVKEGMLNRIDLAWSRDQKEKIYVQDKLREQGAELWRWINDGAHIYVCGDARRMAADVEKALLEVIAEFGAMDIEAADEFLSELRVERRYQRDVY
>NZ_CP043773.1|WP_001290656.1|957679_959392_+|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit
MSEKHPGPLVVEGKLSDAERMKLESNYLRGTIAEDLNDGLTGGFKGDNFLLIRFHGMYQQDDRDIRAERAAQKLEPRHAMLLRCRLPGGVITTTQWQAIDKFAADNTIYGSIRLTNRQTFQFHGILKKNVKPVHQMLHSVGLDALATANDMNRNVLCTSNPYESQLHAEAYEWAKKISEHLLPRTRAYAEIWLDQEKVATTDEEPILGATYLPRKFKTTVVIPPQNDIDLHANDMNFVAIAENGKLVGFNLLVGGGLSIEHGNKKTYARTASEFGYLPLEHTLAVAEAVVTTQRDWGNRTDRKNAKTKYTLERVGVDTFKEEVERRAGIKFEPIRPYEFTGRGDRIGWVKGIDNNWHLTLFIENGRILDYPGRPLKTGLLEIAKIHQGEFRITANQNLIIASVPESQKAKIEKLARDHGLMNAVSAQRENSMACVSFPTCPLAMAEAERFLPSFTDKVEAILEKHGIPDEHIVMRVTGCPNGCGRAMLAEIGLVGKAPGRYNLHLGGNRIGTRIPRMYQENITEPDILASLDQLIGRWAKEREAGEGFGDFTVRAGIIRPVLDPARDFWE
>NZ_CP043773.1|WP_001540809.1|959467_960202_+|phosphoadenosine-phosphosulfate-reductase
MSQLDLNALNELPKVDRVLALAEINAQLETLSAEERVAWALENLPGEYVLSSSFGIQAAVSLHLVNQIRPDIPVILTDTGYLFPETYQFIDELTDKLKLNLKVYRAGESPAWQEARYGKLWEQGVEGIEKYNDINKVEPMNRALKELKAQTWFAGLRREQSGSRAHLPVLATQRGVFKVLPIIDWDNRTVYQYLQKHGLKYHPLWDQGYLSVGDTHTTRKWEPGMAEEETRFFGLKRECGLHEG
>NZ_CP043773.1|WP_024131732.1|960289_961243_-|SPI-1-type-III-secretion-system-effector-SopD
MPVTLSFGNHQNYTLNESRLAHLLSADKEKAIHMGGWDKVQDHFRAEKKDHALEVLHSIIHGQGRGEPGEMEVNVEDINKIYAFKRLQHLACPAHQDLFTIKMDASQTQFLLMVGDTVISQSNIKDILNISDDAVIESMSREERQLFLQICEVIGSKMTWHPELLQESISTLRKEVTGNAQIKTAVYEMMRPAEAPDHPLVEWQDSLTEDEKSMLACINAGNFEPTTQFCKIGYQEVQGEVAFSMMHPCISYLLHSYSPFAEFKPTNSGFLKKLNQDYNDYHAKKMFIDVILEKLYLTHERSLHIGKDGCSRNILLT
>NZ_CP043773.1|WP_000029744.1|961687_964351_+|CRISPR-associated-helicase/endonuclease-Cas3
MSIYHYWGKSRRGETNGGDDYHLLCWHSLDVAAVGYWMVINNIYFIDHYLKKLGIQDKEQAAQFFAWILCWHDIGKFAHSFQQLYRHEALNIFNEPTRHYEKIAHTTLGYMLWNSWLSECPELFPPSLLSVRKSKRVMALWMPVTTGHHGRPPEAIQELDHFRQQDKDAARDFLLRIKALFPLITLPEAWDEDEGIDQFQQLSWFISAAVVLADWTGSASRYFPRTAEKMPVDTYWQQALAKAQTAITLFPSAANVSAFTGIETLFPFIQHPTPLQQKALELDINVDGAQLFILEDVTGAGKTEAALILAHRLMAAGKAQGLYFGLPTMATANAMFERMANTWLALYQPDSRPSLILAHSARRLMDRFNQSIWSVTLSGTEEPDEAQPDSQGCAAWFADSNKKALLAEVGVGTLDQAMMAVMPFKHNNLRLLGLSNKILLADEIHACDAWMSRILEGLIERQASNGNATILLSATLSQQQRDKLVAAFSRGVRRSVQAPLLGHDDYPWLTQVTQTELISQRVDTRKEVERSVDIGWLHSEEACLERIGEAVEKGNCIAWIRNSVDDAIRIYRQLQLSKVVATENLLLFHSRFAFHDRQRIESQTLNLFGKQSGAQRAGKVIIATQVIEQSLDIDCDEMISDLAPVDLLIQRAGRLQRHIRDRNGLVKKSGQDERETPVLRILAPEWDDAPRENWLSSAMRNSAYVYPDHGRMWLTQRILREQGTIRMPQSARLLIESVYGEDVNMPVGFAKTEQLQKGKFYCDRAFARQMLLNFAPGYCAEISDSLPEKMSTRLAEESVTLWLAKIVDGVVTPYTSGEHAWEMSVLRVRQSWWNKHKDEFEKLDGEPLRKWCAQQHQDKDFATVIVVTDCAACGYSANEGLIGMMGE
>NZ_CP043773.1|WP_000368587.1|964362_965922_+|type-I-E-CRISPR-associated-protein-Cse1/CasA
MDNFSLLTTPWLPVRFKDGSTGKLAPVNLADENVVDIAATRADLQGAAWQFLLGLLQCSIAPKRYKNWEDIWFDGLHADALHKALAPLEHAFQFGAETPSFMQDFEELPDNKITIASLLPETPGIQTTELNTDHFIKRGVMECFCPHCAALALFSMQLNAPSGGQGYRTGLRGGGPLTTLIELQEYQGERQTPLWRKLWLNVMPQDAADLPLPVVYDAAVFPWLAATRTSEPPAHTITTDEQVNKLQAYWGMPRRIRLDFATIRQGVCNICGNNSDELLIQMLVKNYGVNYDRWRHPLTPHRLQIKNSKGFEPVITQPGGLLWRDWLGLSQENPTEKNTEYPAQVIKVFNARELRNIKVGLWGFGADFKKMKIRCWYEHHFPLLMTEGLIPDLRKATQTATRLLSLLRSALKEAWFSNAKGARGDFSFIDIDFWNLTQGRFLNLIHDLENGHKPDERLNKWQRELWLFTRCYFDDHVFTNPYESSDLERIMKARKKYFTSSAEKQSAKAAKAKKQEAAE
>NZ_CP043773.1|WP_000029526.1|965918_966467_+|type-I-E-CRISPR-associated-protein-Cse2/CasB
MSIVQEDHKATLRKWHEDLQEKRGARASLRRSKTVNEACLSEGFHLLLMQTHSLWKNKADWHVTALAITAVLAAHIKFIDERQSFATQLGQKKSGDNPVMSKLRFSRLSAVKNPDELLRHLRRAVQLLDGSVNLISLADDIFRWCQEQDDLLNHHRRQQRPTEFLRIRWALEYYQAGDNEQD

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Crispr_ID: NZ_CP043773_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP043773_3

970235-970812

TypeI-E

I-E

Consensus_repeat	Method
GTGTTCCCCGCGCTAGCGGGGATAAACCG	CRISPRCasFinder
GTGTTCCCCGCGCNAGCGGGGATAAACCG	CRT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	PILER-CR

9 spacers

cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3

The CRISPR arrays of NZ_CP043773_3

>merge|NZ_CP043773|3|970235-970812|CRISPRCasFinder,CRT,PILER-CR
GTGTTCCCCGCGCTAGCGGGGATAAACTGCTGCATATTCACGCCTCACTCCAGCACACTGGGTGTTCCCCGCGCTAGCGGGGATAAACCGGTTGGACACTTCCTCCTGAAGCTCAGGTTGGAGTGTTCCCCGCGCTAGCGGGGATAAACCGCTATTTTCCTCGCATCTACAGGCAGGGTGAAAGTGTTCCCCGCGCTAGCGGGGATAAACCGTCGGATAACGTTTCGTCAGCGCGTATCATGCCGTGTTCCCCGCGCTAGCGGGGATAAACCGCTGGGAAGATTGGGCGCTTTCAATATCTTCCAGTGTTCCCCGCGCCAGCGGGGATAAACCGATATTCAAACGGCGCGGGGGGAGACATCCGGAGTGTTCCCCGCGCCAGCGGGGATAAACCGGTTACAGTATCATGTAAAACTGTATAAAAACAGTGCTCCCCGCGCCAGCGGGGATAAACCGATTGAAAAGCTGGCGATAAACAAGGCCCGCCAGTGTTCCCCGCGCCAGCGGGGATAAACCGAGGGGCGTTCCGCAGTCGACAAGGGCTGAAAAATGTTCCCCGCGTCAGCGGGGATAAACAC

>NZ_CP043773|3|3|970235-970812|CRISPRCasFinder
GTGTTCCCCGCGCTAGCGGGGATAAACTG	CTGCATATTCACGCCTCACTCCAGCACACTGG
GTGTTCCCCGCGCTAGCGGGGATAAACCG	GTTGGACACTTCCTCCTGAAGCTCAGGTTGGA
GTGTTCCCCGCGCTAGCGGGGATAAACCG	CTATTTTCCTCGCATCTACAGGCAGGGTGAAA
GTGTTCCCCGCGCTAGCGGGGATAAACCG	TCGGATAACGTTTCGTCAGCGCGTATCATGCC
GTGTTCCCCGCGCTAGCGGGGATAAACCG	CTGGGAAGATTGGGCGCTTTCAATATCTTCCA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ATATTCAAACGGCGCGGGGGGAGACATCCGGA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GTTACAGTATCATGTAAAACTGTATAAAAACA
GTGCTCCCCGCGCCAGCGGGGATAAACCG	ATTGAAAAGCTGGCGATAAACAAGGCCCGCCA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA
ATGTTCCCCGCGTCAGCGGGGATAAACAC

>NZ_CP043773|3|2|970235-970812|CRT
GTGTTCCCCGCGCTAGCGGGGATAAACTG	CTGCATATTCACGCCTCACTCCAGCACACTGG
GTGTTCCCCGCGCTAGCGGGGATAAACCG	GTTGGACACTTCCTCCTGAAGCTCAGGTTGGA
GTGTTCCCCGCGCTAGCGGGGATAAACCG	CTATTTTCCTCGCATCTACAGGCAGGGTGAAA
GTGTTCCCCGCGCTAGCGGGGATAAACCG	TCGGATAACGTTTCGTCAGCGCGTATCATGCC
GTGTTCCCCGCGCTAGCGGGGATAAACCG	CTGGGAAGATTGGGCGCTTTCAATATCTTCCA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ATATTCAAACGGCGCGGGGGGAGACATCCGGA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GTTACAGTATCATGTAAAACTGTATAAAAACA
GTGCTCCCCGCGCCAGCGGGGATAAACCG	ATTGAAAAGCTGGCGATAAACAAGGCCCGCCA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA
ATGTTCCCCGCGTCAGCGGGGATAAACAC

>NZ_CP043773|3|2|970296-970751|PILER-CR
GTGTTCCCCGCGCTAGCGGGGATAAACCG	GTTGGACACTTCCTCCTGAAGCTCAGGTTGGA
GTGTTCCCCGCGCTAGCGGGGATAAACCG	CTATTTTCCTCGCATCTACAGGCAGGGTGAAA
GTGTTCCCCGCGCTAGCGGGGATAAACCG	TCGGATAACGTTTCGTCAGCGCGTATCATGCC
GTGTTCCCCGCGCTAGCGGGGATAAACCG	CTGGGAAGATTGGGCGCTTTCAATATCTTCCA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ATATTCAAACGGCGCGGGGGGAGACATCCGGA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GTTACAGTATCATGTAAAACTGTATAAAAACA
GTGCTCCCCGCGCCAGCGGGGATAAACCG	ATTGAAAAGCTGGCGATAAACAAGGCCCGCCA
GTGTTCCCCGCGCCAGCGGGGATAAACCG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP043773.1\|WP_001540809.1\|959467_960202_+\|phosphoadenosine-phosphosulfate-reductase	unknown	unknown	gnl\|CDD\|234997
NZ_CP043773.1\|WP_000517480.1\|975637_975949_+\|cell-division-protein-FtsB	unknown	unknown	gnl\|CDD\|179156
NZ_CP043773.1\|WP_149826874.1\|973041_974481_+\|sulfate-adenylyltransferase-subunit-CysN	unknown	unknown	gnl\|CDD\|235349
NZ_CP043773.1\|WP_001219244.1\|976677_977157_+\|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase	unknown	unknown	gnl\|CDD\|178851
NZ_CP043773.1\|WP_000206408.1\|966480_967539_+\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	cas7	pfam09344_cas7_CAS-I-E	gnl\|CDD\|273843
NZ_CP043773.1\|WP_000281476.1\|968277_968928_+\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	cas6e	cd09664_cas6e_CAS-I-E	gnl\|CDD\|273869
NZ_CP043773.1\|WP_000368587.1\|964362_965922_+\|type-I-E-CRISPR-associated-protein-Cse1/CasA	cas8e	cd09669_cas8e_CAS-I-E	gnl\|CDD\|274192
NZ_CP043773.1\|WP_000029744.1\|961687_964351_+\|CRISPR-associated-helicase/endonuclease-Cas3	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|224124
NZ_CP043773.1\|WP_001118108.1\|975090_975447_+\|DUF3561-family-protein	unknown	unknown	gnl\|CDD\|371891
NZ_CP043773.1\|WP_001518648.1\|969844_970138_+\|type-I-E-CRISPR-associated-endoribonuclease-Cas2	cas2	cd09648_cas2_CAS-I-E	gnl\|CDD\|236930
NZ_CP043773.1\|WP_001173659.1\|974467_975073_+\|adenylyl-sulfate-kinase	unknown	unknown	gnl\|CDD\|179661
NZ_CP043773.1\|WP_000144833.1\|968924_969845_+\|type-I-E-CRISPR-associated-endonuclease-Cas1	cas1	cd09719_cas1_CAS-I-E	gnl\|CDD\|274693
NZ_CP043773.1\|WP_001221538.1\|978183_978945_+\|5'/3'-nucleotidase-SurE	unknown	unknown	gnl\|CDD\|234732
NZ_CP043773.1\|WP_000085112.1\|967549_968296_+\|type-I-E-CRISPR-associated-protein-Cas5/CasD	cas5	cd09645_cas5_CAS-I-E	gnl\|CDD\|187776
NZ_CP043773.1\|WP_000741645.1\|975967_976678_+\|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	unknown	unknown	gnl\|CDD\|234670
NZ_CP043773.1\|WP_000029526.1\|965918_966467_+\|type-I-E-CRISPR-associated-protein-Cse2/CasB	cse2gr11	cd09731_cse2gr11_CAS-I-E	gnl\|CDD\|187862
NZ_CP043773.1\|WP_000372384.1\|972123_973032_+\|sulfate-adenylyltransferase-subunit-CysD	unknown	unknown	gnl\|CDD\|235375
NZ_CP043773.1\|WP_024131732.1\|960289_961243_-\|SPI-1-type-III-secretion-system-effector-SopD	unknown	unknown	gnl\|CDD\|185277
NZ_CP043773.1\|WP_000134246.1\|977153_978203_+\|tRNA-pseudouridine(13)-synthase-TruD	unknown	unknown	gnl\|CDD\|234884
NZ_CP043773.1\|WP_000490481.1\|970826_971873_-\|aminopeptidase	unknown	unknown	gnl\|CDD\|182299

Protein	Function_ID	Function_description	E-value
NZ_CP043773.1\|WP_001540809.1\|959467_960202_+\|phosphoadenosine-phosphosulfate-reductase	gnl\|CDD\|234997	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase.	1.32701e-138
NZ_CP043773.1\|WP_000517480.1\|975637_975949_+\|cell-division-protein-FtsB	gnl\|CDD\|179156	PRK00888, ftsB, cell division protein FtsB; Reviewed.	1.08865e-64
NZ_CP043773.1\|WP_149826874.1\|973041_974481_+\|sulfate-adenylyltransferase-subunit-CysN	gnl\|CDD\|235349	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional.	0
NZ_CP043773.1\|WP_001219244.1\|976677_977157_+\|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase	gnl\|CDD\|178851	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed.	1.27909e-104
NZ_CP043773.1\|WP_000206408.1\|966480_967539_+\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	gnl\|CDD\|273843	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family is represented by CT1975 of Chlorobium tepidum and is part of the Ecoli subtype of CRISPR/Cas locis. It is designated Cse4, for CRISPR/Cas Subtype Ecoli protein 4.	8.05003e-136
NZ_CP043773.1\|WP_000281476.1\|968277_968928_+\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	gnl\|CDD\|273869	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model family, represented by CT1974 from Chlorobium tepidum, is found in the Ecoli subtype of CRISPR/Cas regions and is designated Cse3 (CRISPR/Cas Subtype Ecoli protein 3). The representative of this family from Thermus thermophilus HB8 (TTHB192) has been crystallized and found to have a structure consisting of two domains with opposing parallel beta-sheets known as a beta-sheet platform. This structure is similar to those found in the Sex-lethal protein and poly(A)-binding protein. This structure is consistent with an RNA-binding function.	1.09322e-73
NZ_CP043773.1\|WP_000368587.1\|964362_965922_+\|type-I-E-CRISPR-associated-protein-Cse1/CasA	gnl\|CDD\|274192	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model family, represented by CT1972 from Chlorobium tepidum, is found in Ecoli subtype CRISPR/Cas regions of many bacteria, most of which are mesophiles, and not in Archaea. It is designated Cse1.	2.75345e-173
NZ_CP043773.1\|WP_000029744.1\|961687_964351_+\|CRISPR-associated-helicase/endonuclease-Cas3	gnl\|CDD\|224124	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms].	0
NZ_CP043773.1\|WP_001118108.1\|975090_975447_+\|DUF3561-family-protein	gnl\|CDD\|371891	pfam12084, DUF3561, Protein of unknown function (DUF3561). This family of proteins is functionally uncharacterized. This protein is found in bacteria. Proteins in this family are about 110 amino acids in length.	3.20304e-48
NZ_CP043773.1\|WP_001518648.1\|969844_970138_+\|type-I-E-CRISPR-associated-endoribonuclease-Cas2	gnl\|CDD\|236930	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional.	1.1867e-62
NZ_CP043773.1\|WP_001173659.1\|974467_975073_+\|adenylyl-sulfate-kinase	gnl\|CDD\|179661	PRK03846, PRK03846, adenylylsulfate kinase; Provisional.	3.2499e-145
NZ_CP043773.1\|WP_000144833.1\|968924_969845_+\|type-I-E-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|274693	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the ECOLI subtype of CRISPR/Cas system.	3.64033e-157
NZ_CP043773.1\|WP_001221538.1\|978183_978945_+\|5'/3'-nucleotidase-SurE	gnl\|CDD\|234732	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional.	1.7078e-146
NZ_CP043773.1\|WP_000085112.1\|967549_968296_+\|type-I-E-CRISPR-associated-protein-Cas5/CasD	gnl\|CDD\|187776	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas5 is a RAMP superfamily protein; Subunit of the Cascade complex.	6.76499e-48
NZ_CP043773.1\|WP_000741645.1\|975967_976678_+\|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	gnl\|CDD\|234670	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase.	1.74134e-119
NZ_CP043773.1\|WP_000029526.1\|965918_966467_+\|type-I-E-CRISPR-associated-protein-Cse2/CasB	gnl\|CDD\|187862	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Small alpha-helical protein; also known as Cse2/CasB/YgcK family; specific gene for I-E subtype;.	8.80691e-33
NZ_CP043773.1\|WP_000372384.1\|972123_973032_+\|sulfate-adenylyltransferase-subunit-CysD	gnl\|CDD\|235375	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD.	0
NZ_CP043773.1\|WP_024131732.1\|960289_961243_-\|SPI-1-type-III-secretion-system-effector-SopD	gnl\|CDD\|185277	PRK15379, PRK15379, type III secretion system effector SopD.	0
NZ_CP043773.1\|WP_000134246.1\|977153_978203_+\|tRNA-pseudouridine(13)-synthase-TruD	gnl\|CDD\|234884	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed.	0
NZ_CP043773.1\|WP_000490481.1\|970826_971873_-\|aminopeptidase	gnl\|CDD\|182299	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional.	0

>NZ_CP043773.1|WP_001518648.1|969844_970138_+|type-I-E-CRISPR-associated-endoribonuclease-Cas2
MSMVVVVTENVPPRLRGRLAVWLLEVRAGVYVGDTSKRIREMIWQQITQLGGVGNVVMAWATNTESGFEFQTWGENRRIPVDLDGLRLVSFLPVENQ
>NZ_CP043773.1|WP_000144833.1|968924_969845_+|type-I-E-CRISPR-associated-endonuclease-Cas1
MTFVPLNPIPLKDRTSMIFLQYGQIDVLDGAFVLIDKTGVRTHIPVGSVACIMLEPGTRVSHAAVHLASTVGTLLVWVGEAGVRVYSSGQPGGARADKLLYQAKLALDDDLRLKVVRKMYELRFREPPPARRSVEQLRGIEGSRVRATYALLAKQYGVKWHGRNYDPKDWEKGDVVNRCISAATSCLYGISEAAILAAGYAPAIGFIHSGKPLSFVYDIADIIKFESVVPKAFEIAARHPAEPDKEVRLACRDIFRSSKLTGKLIPLIEEVLAAGEIEPPQPAPDMLPPAIPEPESLGDSGHRGHG
>NZ_CP043773.1|WP_000281476.1|968277_968928_+|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE
MYLSRITLHTSELSPAQLLHLVECGEYVMHQWLWDLFPGGKERQFLYRREELQGAFRFFVLSQEQPAASAIFDVQTRPFAPMLSAGQTLRFNLRANPTVCKNGKRHDLLMEAKRQRKTQGDSQDIWSYQQQAALTWLARQVEQNGFTLRETSVDAYRQQQIRREKSRQMIQFSSVDYTGVLVLNDPVLFLQRLAQGYGKSRAFGCGMMMIKPGDDA
>NZ_CP043773.1|WP_000085112.1|967549_968296_+|type-I-E-CRISPR-associated-protein-Cas5/CasD
MSQYLVFQLHGPMASWGVDAPGEVRHSHELPSRSALLGLLAAALGIRRDEEERLNAFNRHYQFLLCASGNPRWARDYHTVQMPKEVRKARYFSRREELQDPELLSALISRRDYYTDAWWMIAVSATPDAPYTLAQLQASLQHPVFPLYLGRKSHPLALPLAPQLLEGSAADVLREAYRWYQDQFNALKLPLPRLQNECWWEGEHDGLTASKILRRRDMPLSRQQWLFGERSVNQGPWLRKEDACISQE
>NZ_CP043773.1|WP_000206408.1|966480_967539_+|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC
MTTFIQLHLLTAYPAANLNRDDTGAPKNVVLGGATRLRISSQSLKRAWRTSELFEQALAGNIGIRSGRIAREAAQILIESGIDAKKAVEYVKNIANYFGKVKAEKKPKDELTNAETGQLVHISPAEFEGVKALAHRLAEEKRAPKEEELALLRKDRMAVDIAMFGRMLAEKTDFNVEAACQVAHAFGVSETIVEDDFFTAVDDLRQASAEDAGAGHLGETGFGSALFYTYICINKDLLVKNLNDNEELANKTLRAFTEAALKVSPTGKQNSFASRAYASWALAEKGTDQPRSLAAAFYEPINGTDQLNVAVKRITSLHKNMNKVYGQRTDTASFDVMNQQGSMEDVLDFICA
>NZ_CP043773.1|WP_000029526.1|965918_966467_+|type-I-E-CRISPR-associated-protein-Cse2/CasB
MSIVQEDHKATLRKWHEDLQEKRGARASLRRSKTVNEACLSEGFHLLLMQTHSLWKNKADWHVTALAITAVLAAHIKFIDERQSFATQLGQKKSGDNPVMSKLRFSRLSAVKNPDELLRHLRRAVQLLDGSVNLISLADDIFRWCQEQDDLLNHHRRQQRPTEFLRIRWALEYYQAGDNEQD
>NZ_CP043773.1|WP_000368587.1|964362_965922_+|type-I-E-CRISPR-associated-protein-Cse1/CasA
MDNFSLLTTPWLPVRFKDGSTGKLAPVNLADENVVDIAATRADLQGAAWQFLLGLLQCSIAPKRYKNWEDIWFDGLHADALHKALAPLEHAFQFGAETPSFMQDFEELPDNKITIASLLPETPGIQTTELNTDHFIKRGVMECFCPHCAALALFSMQLNAPSGGQGYRTGLRGGGPLTTLIELQEYQGERQTPLWRKLWLNVMPQDAADLPLPVVYDAAVFPWLAATRTSEPPAHTITTDEQVNKLQAYWGMPRRIRLDFATIRQGVCNICGNNSDELLIQMLVKNYGVNYDRWRHPLTPHRLQIKNSKGFEPVITQPGGLLWRDWLGLSQENPTEKNTEYPAQVIKVFNARELRNIKVGLWGFGADFKKMKIRCWYEHHFPLLMTEGLIPDLRKATQTATRLLSLLRSALKEAWFSNAKGARGDFSFIDIDFWNLTQGRFLNLIHDLENGHKPDERLNKWQRELWLFTRCYFDDHVFTNPYESSDLERIMKARKKYFTSSAEKQSAKAAKAKKQEAAE
>NZ_CP043773.1|WP_000029744.1|961687_964351_+|CRISPR-associated-helicase/endonuclease-Cas3
MSIYHYWGKSRRGETNGGDDYHLLCWHSLDVAAVGYWMVINNIYFIDHYLKKLGIQDKEQAAQFFAWILCWHDIGKFAHSFQQLYRHEALNIFNEPTRHYEKIAHTTLGYMLWNSWLSECPELFPPSLLSVRKSKRVMALWMPVTTGHHGRPPEAIQELDHFRQQDKDAARDFLLRIKALFPLITLPEAWDEDEGIDQFQQLSWFISAAVVLADWTGSASRYFPRTAEKMPVDTYWQQALAKAQTAITLFPSAANVSAFTGIETLFPFIQHPTPLQQKALELDINVDGAQLFILEDVTGAGKTEAALILAHRLMAAGKAQGLYFGLPTMATANAMFERMANTWLALYQPDSRPSLILAHSARRLMDRFNQSIWSVTLSGTEEPDEAQPDSQGCAAWFADSNKKALLAEVGVGTLDQAMMAVMPFKHNNLRLLGLSNKILLADEIHACDAWMSRILEGLIERQASNGNATILLSATLSQQQRDKLVAAFSRGVRRSVQAPLLGHDDYPWLTQVTQTELISQRVDTRKEVERSVDIGWLHSEEACLERIGEAVEKGNCIAWIRNSVDDAIRIYRQLQLSKVVATENLLLFHSRFAFHDRQRIESQTLNLFGKQSGAQRAGKVIIATQVIEQSLDIDCDEMISDLAPVDLLIQRAGRLQRHIRDRNGLVKKSGQDERETPVLRILAPEWDDAPRENWLSSAMRNSAYVYPDHGRMWLTQRILREQGTIRMPQSARLLIESVYGEDVNMPVGFAKTEQLQKGKFYCDRAFARQMLLNFAPGYCAEISDSLPEKMSTRLAEESVTLWLAKIVDGVVTPYTSGEHAWEMSVLRVRQSWWNKHKDEFEKLDGEPLRKWCAQQHQDKDFATVIVVTDCAACGYSANEGLIGMMGE
>NZ_CP043773.1|WP_024131732.1|960289_961243_-|SPI-1-type-III-secretion-system-effector-SopD
MPVTLSFGNHQNYTLNESRLAHLLSADKEKAIHMGGWDKVQDHFRAEKKDHALEVLHSIIHGQGRGEPGEMEVNVEDINKIYAFKRLQHLACPAHQDLFTIKMDASQTQFLLMVGDTVISQSNIKDILNISDDAVIESMSREERQLFLQICEVIGSKMTWHPELLQESISTLRKEVTGNAQIKTAVYEMMRPAEAPDHPLVEWQDSLTEDEKSMLACINAGNFEPTTQFCKIGYQEVQGEVAFSMMHPCISYLLHSYSPFAEFKPTNSGFLKKLNQDYNDYHAKKMFIDVILEKLYLTHERSLHIGKDGCSRNILLT
>NZ_CP043773.1|WP_001540809.1|959467_960202_+|phosphoadenosine-phosphosulfate-reductase
MSQLDLNALNELPKVDRVLALAEINAQLETLSAEERVAWALENLPGEYVLSSSFGIQAAVSLHLVNQIRPDIPVILTDTGYLFPETYQFIDELTDKLKLNLKVYRAGESPAWQEARYGKLWEQGVEGIEKYNDINKVEPMNRALKELKAQTWFAGLRREQSGSRAHLPVLATQRGVFKVLPIIDWDNRTVYQYLQKHGLKYHPLWDQGYLSVGDTHTTRKWEPGMAEEETRFFGLKRECGLHEG
>NZ_CP043773.1|WP_000490481.1|970826_971873_-|aminopeptidase
MFSATRRFAVILALGVGFILPAQAASPGPGEIANTQARHIATFFPGRMTGSPAEMLSADYLRQQFTQMGYQSDIRTFNSRFIYTTKDNRKNWHNVTGSTVIAAHEGRVPQQIIIMAHLDTYAPQSDADVDANLGGLTLQGMDDNAAGLGVMLELAARLKDIPTHYGIRFIATSGEEEGKLGAENLLKRMSDAEKKNTLLVINLDNLIVGDKLYFNSGKNTPEAVRTLTRDRALAIARRYGIAANTNPGRNPSYPKGTGCCNDAEVFDKAGISVLSVEATNWNLGKKDGYQQRVKNASFPNGNSWHDVRLDNQQHIDKALPGRIERRSRDVVRIMLPLVKELAKAEKTS
>NZ_CP043773.1|WP_000372384.1|972123_973032_+|sulfate-adenylyltransferase-subunit-CysD
MDQKRLTHLRQLEAESIHIIREVAAEFANPVMLYSIGKDSSVMLHLARKAFYPGTLPFPLLHVDTGWKFREMYAFRDRTANAYGCELLVHKNPEGVAMGINPFVHGSAKHTDIMKTEGLKQALNKYGFDAAFGGARRDEEKSRAKERIYSFRDRFHRWDPKNQRPELWRNYNGQINKGESIRVFPLSNWTEQDIWQYIWLENIDIVPLYLAAERPVLERDGMLMMVDDDRIDLQPGEVIKKRMVRFRTLGCWPLTGAVESHAQTLPEIIEEMLVSTTSERQGRMIDRDQAGSMELKKRQGYF
>NZ_CP043773.1|WP_149826874.1|973041_974481_+|sulfate-adenylyltransferase-subunit-CysN
MNTILAQQIANEGGVEAWMIAQQHKSLLRFLTCGSVDDGKSTLIGRLLHDTLQIYEDQLSSLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFSTEKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTRRHSFISTLLGIKHLVVAINKMDLVGYREETFARIREDYLTFAEQLPGDLDIRFVPLSALEGDNVAAQSANMRWYSGPTLLEVLETVDIQRAVDRQPMRFPVQYVNRPNLDFRGYAGTLASGSVKVGERIKVLPSGVESSVARIVTFDGDKEEACAGEAITLVLNDDIDISRGDLLLAANETLAPARHAAIDVVWMEEQPLAPGQSYDVKLAGKKTRARIEAIRYQIDINNLTQRDVESLPLNGIGLVEMTFDEPLALDIYQQNPVTGGLIFIDRLSNVTVGAGMVRELDERGATPSVEYSAFELELNALVRRHFPHWDARDLLGDKHGAA
>NZ_CP043773.1|WP_001173659.1|974467_975073_+|adenylyl-sulfate-kinase
MALHDENVVWHSHPVTVAAREQLHGHRGVVLWFTGLSGSGKSTVAGALEEALHHRGVSTYLLDGDNVRHGLCRDLGFSDADRQENIRRVGEVASLMADAGLIVLTAFISPHRAERQLVKERVGHDRFIEIYVNTPLAICEQRDPKGLYKKARAGELRNFTGIDAIYEAPDSPQVHLNGEQLVTNLVSQLLDLLRRRDIIRS
>NZ_CP043773.1|WP_001118108.1|975090_975447_+|DUF3561-family-protein
MPGMVKVTGFNMRNSHNITFTRSDAFMVDDDATSAFPGAVVGFMSWLLALGIPFLLYGPNTLFFFLYTWPFFLALMPVSVIIGIVLHLLVKGKILFSIMFTLLAVGALFGALFIWLLG
>NZ_CP043773.1|WP_000517480.1|975637_975949_+|cell-division-protein-FtsB
MGKLTLLLLALLVWLQYSLWFGKNGIHDYSRVNDDVVAQQATNAKLKARNDQLFAEIDDLNGGQEAIEERARNELSMTKPGETFYRLVPDASKRAATAGQTHR
>NZ_CP043773.1|WP_000741645.1|975967_976678_+|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase
MAATLLDVCAVVPAAGFGRRMQTECPKQYLSIGNKTILEHSVHALLAHPRVTRVVIAISPGDHRFAQLPLANHPQITVVDGGNERADSVLAGLQAVAEAQWVLVHDAARPCLHQDDLARLLAISENSRVGGILASPVRDTMKRGEPGKNAIAHTVERADLWHALTPQFFPRELLHDCLTRALNEGATITDEASALEYCGFHPVLVEGRADNIKVTRPEDLALAEFYLTRTIHQEKA
>NZ_CP043773.1|WP_001219244.1|976677_977157_+|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase
MRIGHGFDVHAFGGEGPIIIGGVRIPYEKGLLAHSDGDVALHALTDALLGAAALGDIGKLFPDTDPAFKGADSRELLREAWRRIQAKGYTLGNVDVTIIAQAPKMLPHIPQMRVFIAEDLGCHMDDVNVKATTTEKLGFTGRGEGIACEAVALLMKAAK
>NZ_CP043773.1|WP_000134246.1|977153_978203_+|tRNA-pseudouridine(13)-synthase-TruD
MTEFDNLTWLHGKPQGSGLLKANPEDFVVVEDLGFTPDGEGEHILLRILKNGCNTRFVADALAKFLKIHAREVSFAGQKDKHAVTEQWLCARVPGKEMPDFSAFQLEGCKVLEYARHKRKLRLGALKGNAFTLVLREISDRRDVETRLQAIRDGGVPNYFGAQRFGIGGSNLQGALRWAQSNAPVRDRNKRSFWLSAARSALFNQIVHQRLKKPDFNQVVDGDALQLAGRGSWFVATSEELPELQRRVDEKELMITASLPGSGEWGTQRAALAFEQDAIAQETVLQSLLLREKVEASRRAMLLYPQQLSWNWWDDVTVELRFWLPAGSFATSVVRELINTMGDYAHIAE
>NZ_CP043773.1|WP_001221538.1|978183_978945_+|5'/3'-nucleotidase-SurE
MRILLSNDDGVHAPGIQTLAKALREFADVQVVAPDRNRSGASNSLTLESSLRTFTFDNGDIAVQMGTPTDCVYLGVNALMRPRPDIVVSGINAGPNLGDDVIYSGTVAAAMEGRHLGFPALAVSLNGYQHYDTAAAVTCALLRGLSREPLRTGRILNVNVPDLPLAQVKGIRVTRCGSRHPADKVIPQEDPRGNTLYWIGPPGDKYDAGPDTDFAAVDEGYVSVTPLHVDLTAHSAHDVVSDWLDSVGVGTQW

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP043773_3	3.8\|970691\|32\|NZ_CP043773\|CRISPRCasFinder,CRT,PILER-CR	970691-970722	32	MW013502	Salmonella virus L cI-40 13-am43, complete genome	23028-23059	2	0.938
NZ_CP043773_3	3.8\|970691\|32\|NZ_CP043773\|CRISPRCasFinder,CRT,PILER-CR	970691-970722	32	NC_004348	Enterobacteria phage ST64T, complete genome	6214-6245	2	0.938
NZ_CP043773_3	3.8\|970691\|32\|NZ_CP043773\|CRISPRCasFinder,CRT,PILER-CR	970691-970722	32	MW013503	Salmonella virus L cII-101, complete genome	23028-23059	2	0.938
NZ_CP043773_3	3.8\|970691\|32\|NZ_CP043773\|CRISPRCasFinder,CRT,PILER-CR	970691-970722	32	NC_018275	Salmonella phage vB_SemP_Emek, complete genome	23194-23225	2	0.938
NZ_CP043773_3	3.8\|970691\|32\|NZ_CP043773\|CRISPRCasFinder,CRT,PILER-CR	970691-970722	32	AY052766	Salmonella typhimurium bacteriophage ST64T, complete genome	6214-6245	2	0.938
NZ_CP043773_3	3.8\|970691\|32\|NZ_CP043773\|CRISPRCasFinder,CRT,PILER-CR	970691-970722	32	MF188997	Salmonella phage vB_SalP_PM43, complete genome	6214-6245	2	0.938
NZ_CP043773_3	3.8\|970691\|32\|NZ_CP043773\|CRISPRCasFinder,CRT,PILER-CR	970691-970722	32	CP051275	Salmonella phage SW-37, complete genome	24465-24496	4	0.875
NZ_CP043773_3	3.8\|970691\|32\|NZ_CP043773\|CRISPRCasFinder,CRT,PILER-CR	970691-970722	32	NC_028696	Salmonella phage SEN22, complete genome	23234-23265	4	0.875
NZ_CP043773_2	2.5\|952369\|32\|NZ_CP043773\|PILER-CR,CRISPRCasFinder,CRT	952369-952400	32	KX853513	Uncultured virus isolate Rctr41k, partial genome	9657-9688	6	0.812
NZ_CP043773_3	3.8\|970691\|32\|NZ_CP043773\|CRISPRCasFinder,CRT,PILER-CR	970691-970722	32	MN098327	Klebsiella phage Mulock, complete genome	37823-37854	6	0.812
NZ_CP043773_2	2.3\|952247\|32\|NZ_CP043773\|PILER-CR,CRISPRCasFinder,CRT	952247-952278	32	NZ_CP045074	Paracoccus kondratievae strain BJQ0001 plasmid unnamed1, complete sequence	186036-186067	8	0.75
NZ_CP043773_2	2.3\|952247\|32\|NZ_CP043773\|PILER-CR,CRISPRCasFinder,CRT	952247-952278	32	NZ_CP035092	Paracoccus denitrificans strain ATCC 19367 plasmid unnamed1, complete sequence	610659-610690	8	0.75
NZ_CP043773_2	2.3\|952247\|32\|NZ_CP043773\|PILER-CR,CRISPRCasFinder,CRT	952247-952278	32	NC_008688	Paracoccus denitrificans PD1222 plasmid 1, complete sequence	204192-204223	8	0.75
NZ_CP043773_2	2.8\|952552\|32\|NZ_CP043773\|PILER-CR,CRISPRCasFinder,CRT	952552-952583	32	NZ_CP029832	Azospirillum ramasamyi strain M2T2B2 plasmid unnamed2, complete sequence	167172-167203	8	0.75
NZ_CP043773_2	2.8\|952552\|32\|NZ_CP043773\|PILER-CR,CRISPRCasFinder,CRT	952552-952583	32	NC_016586	Azospirillum lipoferum 4B plasmid AZO_p2, complete sequence	405399-405430	8	0.75
NZ_CP043773_2	2.3\|952247\|32\|NZ_CP043773\|PILER-CR,CRISPRCasFinder,CRT	952247-952278	32	NZ_CP044425	Paracoccus pantotrophus strain DSM 2944 plasmid pPAN2, complete sequence	144184-144215	9	0.719
NZ_CP043773_3	3.1\|970264\|32\|NZ_CP043773\|CRISPRCasFinder,CRT	970264-970295	32	NZ_CP022021	Listeria monocytogenes strain FDA709873-33 plasmid pCFSAN021445, complete sequence	72705-72736	9	0.719
NZ_CP043773_3	3.1\|970264\|32\|NZ_CP043773\|CRISPRCasFinder,CRT	970264-970295	32	NZ_CP041212	Listeria monocytogenes strain LMP18-H2446 plasmid pCFSAN074383, complete sequence	56906-56937	9	0.719
NZ_CP043773_3	3.1\|970264\|32\|NZ_CP043773\|CRISPRCasFinder,CRT	970264-970295	32	NC_022045	Listeria monocytogenes strain N1-011A plasmid, complete sequence	76500-76531	9	0.719
NZ_CP043773_3	3.1\|970264\|32\|NZ_CP043773\|CRISPRCasFinder,CRT	970264-970295	32	NZ_CP014251	Listeria monocytogenes strain CFSAN010068 plasmid pCFSAN010068_01, complete sequence	30149-30180	9	0.719
NZ_CP043773_3	3.1\|970264\|32\|NZ_CP043773\|CRISPRCasFinder,CRT	970264-970295	32	NC_003383	Listeria innocua Clip11262 plasmid pLI100, complete sequence	23028-23059	9	0.719
NZ_CP043773_3	3.1\|970264\|32\|NZ_CP043773\|CRISPRCasFinder,CRT	970264-970295	32	NZ_MH382833	Listeria welshimeri strain 40/07 plasmid pLIS1, complete sequence	11753-11784	9	0.719
NZ_CP043773_3	3.1\|970264\|32\|NZ_CP043773\|CRISPRCasFinder,CRT	970264-970295	32	NZ_CP020834	Listeria monocytogenes strain CFSAN004330 plasmid pCFSAN004330, complete sequence	35903-35934	9	0.719
NZ_CP043773_2	2.8\|952552\|32\|NZ_CP043773\|PILER-CR,CRISPRCasFinder,CRT	952552-952583	32	NZ_CP053711	Acetobacteraceae bacterium strain PAMC 26569 plasmid unnamed4, complete sequence	113090-113121	10	0.688
NZ_CP043773_3	3.9\|970752\|32\|NZ_CP043773\|CRISPRCasFinder,CRT	970752-970783	32	NC_016113	Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCAT, complete sequence	1151729-1151760	10	0.688
NZ_CP043773_3	3.9\|970752\|32\|NZ_CP043773\|CRISPRCasFinder,CRT	970752-970783	32	NC_017585	Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCATT, complete sequence	661429-661460	10	0.688
NZ_CP043773_3	3.3\|970386\|32\|NZ_CP043773\|CRISPRCasFinder,CRT,PILER-CR	970386-970417	32	NZ_CP021033	Rhizobium sp. NXC14 plasmid pRspNXC14c, complete sequence	100779-100810	11	0.656

1. spacer 3.8|970691|32|NZ_CP043773|CRISPRCasFinder,CRT,PILER-CR matches to MW013502 (Salmonella virus L cI-40 13-am43, complete genome) position: , mismatch: 2, identity: 0.938

attgaaaagctggcgataaacaaggcccgcca	CRISPR spacer
gtggaaaagctggcgataaacaaggcccgcca	Protospacer
.* *****************************

2. spacer 3.8|970691|32|NZ_CP043773|CRISPRCasFinder,CRT,PILER-CR matches to NC_004348 (Enterobacteria phage ST64T, complete genome) position: , mismatch: 2, identity: 0.938

attgaaaagctggcgataaacaaggcccgcca	CRISPR spacer
gtggaaaagctggcgataaacaaggcccgcca	Protospacer
.* *****************************

3. spacer 3.8|970691|32|NZ_CP043773|CRISPRCasFinder,CRT,PILER-CR matches to MW013503 (Salmonella virus L cII-101, complete genome) position: , mismatch: 2, identity: 0.938

attgaaaagctggcgataaacaaggcccgcca	CRISPR spacer
gtggaaaagctggcgataaacaaggcccgcca	Protospacer
.* *****************************

4. spacer 3.8|970691|32|NZ_CP043773|CRISPRCasFinder,CRT,PILER-CR matches to NC_018275 (Salmonella phage vB_SemP_Emek, complete genome) position: , mismatch: 2, identity: 0.938

attgaaaagctggcgataaacaaggcccgcca	CRISPR spacer
gtggaaaagctggcgataaacaaggcccgcca	Protospacer
.* *****************************

5. spacer 3.8|970691|32|NZ_CP043773|CRISPRCasFinder,CRT,PILER-CR matches to AY052766 (Salmonella typhimurium bacteriophage ST64T, complete genome) position: , mismatch: 2, identity: 0.938

attgaaaagctggcgataaacaaggcccgcca	CRISPR spacer
gtggaaaagctggcgataaacaaggcccgcca	Protospacer
.* *****************************

6. spacer 3.8|970691|32|NZ_CP043773|CRISPRCasFinder,CRT,PILER-CR matches to MF188997 (Salmonella phage vB_SalP_PM43, complete genome) position: , mismatch: 2, identity: 0.938

attgaaaagctggcgataaacaaggcccgcca	CRISPR spacer
gtggaaaagctggcgataaacaaggcccgcca	Protospacer
.* *****************************

7. spacer 3.8|970691|32|NZ_CP043773|CRISPRCasFinder,CRT,PILER-CR matches to CP051275 (Salmonella phage SW-37, complete genome) position: , mismatch: 4, identity: 0.875

attgaaaagctggcgataaacaaggcccgcca	CRISPR spacer
gtagaaaagctggcggtaaacaagtcccgcca	Protospacer
.* ************.******** *******

8. spacer 3.8|970691|32|NZ_CP043773|CRISPRCasFinder,CRT,PILER-CR matches to NC_028696 (Salmonella phage SEN22, complete genome) position: , mismatch: 4, identity: 0.875

attgaaaagctggcgataaacaaggcccgcca	CRISPR spacer
gtggaaaagctggagataaacaagtcccgcca	Protospacer
.* ********** ********** *******

9. spacer 2.5|952369|32|NZ_CP043773|PILER-CR,CRISPRCasFinder,CRT matches to KX853513 (Uncultured virus isolate Rctr41k, partial genome) position: , mismatch: 6, identity: 0.812

aaattagtagtcattttgaaacccttagtggt	CRISPR spacer
aaattagtagtcattttgaactccttttctgt	Protospacer
******************** .****  . **

10. spacer 3.8|970691|32|NZ_CP043773|CRISPRCasFinder,CRT,PILER-CR matches to MN098327 (Klebsiella phage Mulock, complete genome) position: , mismatch: 6, identity: 0.812

attgaaaagctggcgataaacaaggcccgcca	CRISPR spacer
attgaaaagctggcggtgaacaagcagcgcaa	Protospacer
***************.*.******   *** *

11. spacer 2.3|952247|32|NZ_CP043773|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP045074 (Paracoccus kondratievae strain BJQ0001 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.75

gccatcgacggacaagaaaacccaccggaaga	CRISPR spacer
gccatcgacgggcaggaaaacccgctgtcggt	Protospacer
***********.**.********.*.*  .*

12. spacer 2.3|952247|32|NZ_CP043773|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP035092 (Paracoccus denitrificans strain ATCC 19367 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.75

gccatcgacggacaagaaaacccaccggaaga	CRISPR spacer
gccatcgacgggcaggaaaacccgctttcagt	Protospacer
***********.**.********.*.   **

13. spacer 2.3|952247|32|NZ_CP043773|PILER-CR,CRISPRCasFinder,CRT matches to NC_008688 (Paracoccus denitrificans PD1222 plasmid 1, complete sequence) position: , mismatch: 8, identity: 0.75

gccatcgacggacaagaaaacccaccggaaga	CRISPR spacer
gccatcgacgggcaggaaaacccgctttcagt	Protospacer
***********.**.********.*.   **

14. spacer 2.8|952552|32|NZ_CP043773|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP029832 (Azospirillum ramasamyi strain M2T2B2 plasmid unnamed2, complete sequence) position: , mismatch: 8, identity: 0.75

gcccgcctgtcgctgtacgccggggcggcata	CRISPR spacer
cgcggcctgtcgctgtccgccgcggcggggga	Protospacer
  * ************ ***** ***** . *

15. spacer 2.8|952552|32|NZ_CP043773|PILER-CR,CRISPRCasFinder,CRT matches to NC_016586 (Azospirillum lipoferum 4B plasmid AZO_p2, complete sequence) position: , mismatch: 8, identity: 0.75

gcccgcctgtcgctgtacgccggggcggcata	CRISPR spacer
cgcggcctgtcgctgtccgccgcggcggggga	Protospacer
  * ************ ***** ***** . *

16. spacer 2.3|952247|32|NZ_CP043773|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP044425 (Paracoccus pantotrophus strain DSM 2944 plasmid pPAN2, complete sequence) position: , mismatch: 9, identity: 0.719

gccatcgacggacaagaaaacccaccggaaga	CRISPR spacer
gccatcgacgggcaggaaaacccgctctcggt	Protospacer
***********.**.********.*.   .*

17. spacer 3.1|970264|32|NZ_CP043773|CRISPRCasFinder,CRT matches to NZ_CP022021 (Listeria monocytogenes strain FDA709873-33 plasmid pCFSAN021445, complete sequence) position: , mismatch: 9, identity: 0.719

ctgcatattcacgcctcactccagcacactgg--	CRISPR spacer
tgccatattcacgccacactcca--acaacgatt	Protospacer
.  ************ *******  *** .*.

18. spacer 3.1|970264|32|NZ_CP043773|CRISPRCasFinder,CRT matches to NZ_CP041212 (Listeria monocytogenes strain LMP18-H2446 plasmid pCFSAN074383, complete sequence) position: , mismatch: 9, identity: 0.719

ctgcatattcacgcctcactccagcacactgg--	CRISPR spacer
tgccatattcacgccacactcca--acaacgatt	Protospacer
.  ************ *******  *** .*.

19. spacer 3.1|970264|32|NZ_CP043773|CRISPRCasFinder,CRT matches to NC_022045 (Listeria monocytogenes strain N1-011A plasmid, complete sequence) position: , mismatch: 9, identity: 0.719

ctgcatattcacgcctcactccagcacactgg--	CRISPR spacer
tgccatattcacgccacactcca--acaacgatt	Protospacer
.  ************ *******  *** .*.

20. spacer 3.1|970264|32|NZ_CP043773|CRISPRCasFinder,CRT matches to NZ_CP014251 (Listeria monocytogenes strain CFSAN010068 plasmid pCFSAN010068_01, complete sequence) position: , mismatch: 9, identity: 0.719

ctgcatattcacgcctcactccagcacactgg--	CRISPR spacer
tgccatattcacgccacactcca--acaacgatt	Protospacer
.  ************ *******  *** .*.

21. spacer 3.1|970264|32|NZ_CP043773|CRISPRCasFinder,CRT matches to NC_003383 (Listeria innocua Clip11262 plasmid pLI100, complete sequence) position: , mismatch: 9, identity: 0.719

ctgcatattcacgcctcactccagcacactgg--	CRISPR spacer
tgccatattcacgccacactcca--acaacgatt	Protospacer
.  ************ *******  *** .*.

22. spacer 3.1|970264|32|NZ_CP043773|CRISPRCasFinder,CRT matches to NZ_MH382833 (Listeria welshimeri strain 40/07 plasmid pLIS1, complete sequence) position: , mismatch: 9, identity: 0.719

ctgcatattcacgcctcactccagcacactgg--	CRISPR spacer
tgccatattcacgccacactcca--acaacgatt	Protospacer
.  ************ *******  *** .*.

23. spacer 3.1|970264|32|NZ_CP043773|CRISPRCasFinder,CRT matches to NZ_CP020834 (Listeria monocytogenes strain CFSAN004330 plasmid pCFSAN004330, complete sequence) position: , mismatch: 9, identity: 0.719

ctgcatattcacgcctcactccagcacactgg--	CRISPR spacer
tgccatattcacgccacactcca--acaacgatt	Protospacer
.  ************ *******  *** .*.

24. spacer 2.8|952552|32|NZ_CP043773|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP053711 (Acetobacteraceae bacterium strain PAMC 26569 plasmid unnamed4, complete sequence) position: , mismatch: 10, identity: 0.688

gcccgcctgtcgctgtacgccggggcggcata	CRISPR spacer
gcccgcctgtcgcagcacgccggtgaactgcg	Protospacer
************* *.******* * . ....

25. spacer 3.9|970752|32|NZ_CP043773|CRISPRCasFinder,CRT matches to NC_016113 (Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCAT, complete sequence) position: , mismatch: 10, identity: 0.688

aggggcgttccgcagtcgacaagggctgaaaa	CRISPR spacer
ccgggcggtccgcagtcgacgagggtgaggga	Protospacer
  ***** ************.****. ....*

26. spacer 3.9|970752|32|NZ_CP043773|CRISPRCasFinder,CRT matches to NC_017585 (Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCATT, complete sequence) position: , mismatch: 10, identity: 0.688

aggggcgttccgcagtcgacaagggctgaaaa	CRISPR spacer
ccgggcggtccgcagtcgacgagggtgaggga	Protospacer
  ***** ************.****. ....*

27. spacer 3.3|970386|32|NZ_CP043773|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP021033 (Rhizobium sp. NXC14 plasmid pRspNXC14c, complete sequence) position: , mismatch: 11, identity: 0.656

ctattttcctcgcatctacaggcagggtgaaa	CRISPR spacer
gaccccgcctcgcatcaacaggcacggtgagg	Protospacer
   ... ********* ******* *****..

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1136814 : 1201228

Salmonella_phage(93.48%)

transposase,head,integrase,tRNA,lysis,tail,plate,portal,capsid,terminase

attL 1138202:1138250|attR 1172236:1172284

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_110161805.1\|1136814_1137983_-\|transposase	IS3 family transposase	Q716C2	Shigella_phage	4.2e-165	89.1
1138202:1138250	attL	NA	NA	NA	NA
WP_000360326.1\|1138369_1139032_-	hypothetical protein	E5G6K9	Salmonella_phage	3.4e-124	100.0
WP_000218402.1\|1139584_1140601_-\|integrase	site-specific integrase	E5G6L0	Salmonella_phage	5.0e-199	100.0
WP_000932273.1\|1140603_1141236_-	phage repressor protein CI	A0A1S6KZZ7	Salmonella_phage	6.3e-59	51.4
WP_000102105.1\|1141357_1141600_+	Rha family transcriptional regulator	A0A1S6KZZ6	Salmonella_phage	6.8e-38	97.5
WP_000460848.1\|1141633_1142143_+	phage regulatory CII family protein	E5G6L3	Salmonella_phage	1.5e-87	100.0
WP_000956190.1\|1142150_1142351_+	DUF2724 domain-containing protein	E5G6L4	Salmonella_phage	2.4e-33	100.0
WP_000963474.1\|1142314_1142656_+	DUF5347 domain-containing protein	E5G6L5	Salmonella_phage	1.2e-56	100.0
WP_001244219.1\|1142723_1142957_+	DUF2732 family protein	E5G6L6	Salmonella_phage	1.7e-33	100.0
WP_000752613.1\|1142956_1143184_+	TraR/DksA family transcriptional regulator	E5G6L7	Salmonella_phage	2.7e-36	100.0
WP_000104187.1\|1143180_1144038_+	DNA adenine methylase	E5G6L8	Salmonella_phage	6.8e-165	100.0
WP_000017507.1\|1144034_1146449_+	replication endonuclease	E5G6L9	Salmonella_phage	0.0e+00	100.0
WP_001154433.1\|1146601_1146790_+	hypothetical protein	E5G6M0	Salmonella_phage	1.4e-27	100.0
WP_001217575.1\|1146800_1147034_+	DinI family protein	E5G6M1	Salmonella_phage	4.7e-36	100.0
WP_001673609.1\|1147147_1147825_+	hypothetical protein	NA	NA	NA	NA
WP_001284991.1\|1148138_1149803_+	AIPR family protein	E5G6M2	Salmonella_phage	0.0e+00	100.0
WP_001542203.1\|1149906_1150947_-\|portal	phage portal protein	E5G6M3	Salmonella_phage	5.5e-201	100.0
WP_001098395.1\|1150946_1152713_-\|terminase	terminase ATPase subunit family protein	A0A1S6KZW3	Salmonella_phage	0.0e+00	97.1
WP_000216276.1\|1152855_1153689_+\|capsid	GPO family capsid scaffolding protein	E5G6M5	Salmonella_phage	3.1e-130	100.0
WP_000730759.1\|1153705_1154767_+\|capsid	phage major capsid protein, P2 family	E5G6M6	Salmonella_phage	2.1e-195	100.0
WP_000059173.1\|1154770_1155421_+\|terminase	terminase endonuclease subunit	E5G6M7	Salmonella_phage	4.9e-115	100.0
WP_000673537.1\|1155514_1155979_+\|head	head completion/stabilization protein	E5G6M8	Salmonella_phage	9.9e-86	100.0
WP_000868184.1\|1155978_1156182_+\|tail	tail protein X	E5G6M9	Salmonella_phage	3.8e-34	100.0
WP_000171565.1\|1156185_1156401_+	hypothetical protein	E5G6N0	Salmonella_phage	5.9e-33	100.0
WP_001069923.1\|1156381_1156897_+	lysozyme	E5G6N1	Salmonella_phage	5.3e-96	100.0
WP_000196199.1\|1156893_1157322_+\|lysis	LysB family phage lysis regulatory protein	E5G6N2	Salmonella_phage	2.3e-68	100.0
WP_072100776.1\|1157251_1157455_+	hypothetical protein	A0A1S6KZX6	Salmonella_phage	8.3e-29	92.5
WP_001039958.1\|1157417_1157849_+\|tail	phage tail protein	E5G6N3	Salmonella_phage	1.7e-76	100.0
WP_000343949.1\|1157841_1158288_+	phage virion morphogenesis protein	E5G6N4	Salmonella_phage	2.3e-71	99.3
WP_000958562.1\|1158289_1159141_-	hypothetical protein	E5G6N5	Salmonella_phage	2.8e-163	100.0
WP_001672413.1\|1159218_1159797_+\|plate	phage baseplate assembly protein V	E5G6N6	Salmonella_phage	1.4e-108	100.0
WP_000189373.1\|1159793_1160153_+\|plate	baseplate assembly protein	E5G6N7	Salmonella_phage	1.1e-60	100.0
WP_000268332.1\|1160139_1161048_+\|plate	baseplate assembly protein	E5G6N8	Salmonella_phage	5.4e-160	100.0
WP_001086804.1\|1161040_1161646_+\|tail	phage tail protein I	E5G6N9	Salmonella_phage	1.3e-117	100.0
WP_001274649.1\|1161642_1163496_+\|tail	phage tail protein	E5G6P0	Salmonella_phage	0.0e+00	100.0
WP_000143187.1\|1163495_1164071_+\|tail	tail fiber assembly protein	E5G6P1	Salmonella_phage	4.3e-107	100.0
WP_000974843.1\|1164940_1165165_+	helix-turn-helix domain-containing protein	E5G6P5	Salmonella_phage	1.5e-34	100.0
WP_000046108.1\|1165267_1166440_+\|tail	phage tail sheath protein	E5G6P7	Salmonella_phage	8.9e-224	100.0
WP_001207651.1\|1166449_1166965_+\|tail	phage major tail tube protein	E5G6P8	Salmonella_phage	9.3e-93	100.0
WP_001280963.1\|1167019_1167322_+\|tail	phage tail assembly protein	E5G6P9	Salmonella_phage	1.5e-45	100.0
WP_000763316.1\|1167336_1167456_+\|tail	GpE family phage tail protein	E5G6Q0	Salmonella_phage	1.8e-15	100.0
WP_001677191.1\|1167448_1170256_+\|tail	phage tail tape measure protein	E5G6Q1	Salmonella_phage	0.0e+00	100.0
WP_000980411.1\|1170252_1170738_+\|tail	phage tail protein	E5G6Q2	Salmonella_phage	6.7e-77	100.0
WP_001102269.1\|1170734_1171835_+	phage late control D family protein	E5G6Q3	Salmonella_phage	2.6e-201	100.0
WP_000980500.1\|1171903_1172122_+	hypothetical protein	E5G6Q4	Salmonella_phage	2.1e-38	100.0
WP_072102794.1\|1172673_1173837_-	HlyD family type I secretion periplasmic adaptor subunit	NA	NA	NA	NA
1172236:1172284	attR	NA	NA	NA	NA
WP_000196135.1\|1173844_1176025_-	type I secretion system permease/ATPase	F2Y302	Organic_Lake_phycodnavirus	1.3e-18	34.0
WP_000533855.1\|1176021_1177431_-	TolC family outer membrane protein	NA	NA	NA	NA
WP_001518569.1\|1189584_1190067_-	SsrA-binding protein SmpB	W5RAM5	Staphylococcus_phage	5.2e-29	47.4
WP_000242603.1\|1190216_1190693_+	type II toxin-antitoxin system RatA family toxin	NA	NA	NA	NA
WP_001112990.1\|1190682_1190973_+	RnfH family protein	NA	NA	NA	NA
WP_001203445.1\|1191138_1191477_-	outer membrane protein assembly factor BamE	NA	NA	NA	NA
WP_000880965.1\|1191625_1193287_-	DNA repair protein RecN	NA	NA	NA	NA
WP_001059160.1\|1193372_1194251_-	NAD(+) kinase	NA	NA	NA	NA
WP_001518875.1\|1194374_1194965_+	nucleotide exchange factor GrpE	NA	NA	NA	NA
WP_127172650.1\|1195723_1197010_-	HlyC/CorC family transporter	NA	NA	NA	NA
WP_001537507.1\|1197029_1197821_-	inner membrane protein YpjD	NA	NA	NA	NA
WP_000460054.1\|1197986_1199348_+	signal recognition particle protein	NA	NA	NA	NA
WP_000256453.1\|1199600_1199849_+	30S ribosomal protein S16	NA	NA	NA	NA
WP_000043267.1\|1199867_1200416_+	ribosome maturation factor RimM	NA	NA	NA	NA
WP_000469813.1\|1200460_1201228_+\|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	NA	NA	NA	NA

DBSCAN-SWA_2

1705866 : 1715035

Enterobacteria_phage(66.67%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000569173.1\|1705866_1706814_+	ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	1.7e-23	31.2
WP_000824848.1\|1706797_1707529_+	ABC transporter permease	NA	NA	NA	NA
WP_001261696.1\|1707509_1707617_-	protein YohO	NA	NA	NA	NA
WP_001240418.1\|1707676_1708408_-	HTH-type transcriptional regulator MlrA	Q9EYF2	Enterobacteria_phage	4.5e-101	87.9
WP_000272854.1\|1708630_1710316_+	sensor histidine kinase	Q9EYF3	Enterobacteria_phage	8.1e-279	91.3
WP_000598637.1\|1710312_1711032_+	two-component system response regulator BtsR	NA	NA	NA	NA
WP_000950413.1\|1711078_1711546_+	DUF1456 family protein	Q9EYF4	Enterobacteria_phage	3.9e-74	90.3
WP_000703137.1\|1712302_1712761_-	YehR family lipoprotein	Q9EYF5	Enterobacteria_phage	8.4e-53	72.5
WP_000195341.1\|1713001_1715035_-\|tRNA	methionine--tRNA ligase	A0A1V0SDF2	Indivirus	6.1e-55	26.9

DBSCAN-SWA_3

1884404 : 1891653

Morganella_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000394197.1\|1884404_1884824_+	translesion error-prone DNA polymerase V autoproteolytic subunit	A0A1W6JNS2	Morganella_phage	8.5e-36	60.5
WP_149826942.1\|1884826_1886095_+	translesion error-prone DNA polymerase V subunit UmuC	I6RSM4	Salmonella_phage	1.5e-224	91.7
WP_000208509.1\|1886549_1886762_+	cold-shock protein	A0A1W6JNX5	Morganella_phage	3.9e-21	70.0
WP_024131163.1\|1886772_1886961_+	hypothetical protein	NA	NA	NA	NA
WP_001080669.1\|1887219_1888413_-	porin OmpS1	Q1MVN1	Enterobacteria_phage	1.5e-109	56.0
WP_000107439.1\|1889062_1889374_+	hypothetical protein	NA	NA	NA	NA
WP_000377046.1\|1889453_1890149_+	phosphohydrolase	A0A1D6Y7U0	Golden_Marseillevirus	4.3e-08	27.6
WP_001157303.1\|1890222_1891653_+	DNA cytosine methyltransferase	E5E3X6	Burkholderia_phage	1.0e-104	57.4

DBSCAN-SWA_4

2794503 : 2996771

204

Salmonella_phage(25.22%)

transposase,integrase,tRNA,protease,portal,tail,holin,terminase

attL 2867138:2867156|attR 3003421:3003439

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_077905920.1\|2794503_2794827_-	hypothetical protein	E5G6P3	Salmonella_phage	3.2e-06	66.7
WP_001123044.1\|2795041_2795917_+	SPI-2 type III secretion system effector PipB	NA	NA	NA	NA
WP_000938189.1\|2796138_2796819_+\|protease	type III secretion system effector protease PipA	Q9MBM0	Phage_Gifsy-2	1.3e-73	66.4
WP_024142146.1\|2797204_2797471_+	hypothetical protein	A0A0M3ULK3	Salmonella_phage	1.7e-37	86.4
WP_024138909.1\|2797486_2797678_-	DUF2767 family protein	A0A0M4R5C3	Salmonella_phage	5.8e-16	97.7
WP_001530989.1\|2797786_2798221_-	hypothetical protein	NA	NA	NA	NA
WP_046595041.1\|2798576_2799170_-\|tail	tail fiber assembly protein	A0A0M4RTP2	Salmonella_phage	8.2e-93	87.4
WP_010835745.1\|2799159_2799984_-	Gifsy-1 prophage protein	A0A0M4QWS3	Salmonella_phage	9.8e-153	94.9
WP_046595042.1\|2799980_2801690_-\|tail	tail fiber protein	A0A0U2SAV1	Escherichia_phage	7.6e-91	65.6
WP_000729406.1\|2801686_2802313_-	hypothetical protein	A0A0U2RK03	Escherichia_phage	3.3e-92	71.6
WP_149827020.1\|2802296_2803523_-	hypothetical protein	A0A0U2RJZ0	Escherichia_phage	5.4e-147	63.6
WP_001261467.1\|2803519_2803852_-	hypothetical protein	NA	NA	NA	NA
WP_000026342.1\|2803848_2804565_-	hypothetical protein	NA	NA	NA	NA
WP_010835743.1\|2804561_2805605_-	hypothetical protein	NA	NA	NA	NA
WP_000061271.1\|2805604_2805880_-	hypothetical protein	NA	NA	NA	NA
WP_000011138.1\|2805876_2806593_-	hypothetical protein	A0A0U2JGI7	Escherichia_phage	1.3e-28	36.5
WP_046595047.1\|2806592_2808647_-	hypothetical protein	A0A2R3UAN6	Myoviridae_environmental_samples	2.9e-20	35.8
WP_046595050.1\|2808770_2809358_-	hypothetical protein	NA	NA	NA	NA
WP_001133547.1\|2809357_2809795_-	hypothetical protein	NA	NA	NA	NA
WP_001018953.1\|2809798_2811193_-	hypothetical protein	A0A0U2KD19	Escherichia_phage	9.3e-71	37.0
WP_010835739.1\|2811198_2812137_-	hypothetical protein	A0A0U2SH76	Escherichia_phage	1.9e-51	39.5
WP_046595124.1\|2812120_2812531_-	hypothetical protein	NA	NA	NA	NA
WP_046595054.1\|2812548_2812974_-	hypothetical protein	NA	NA	NA	NA
WP_001643824.1\|2812986_2813472_-	hypothetical protein	NA	NA	NA	NA
WP_001110972.1\|2813536_2814568_-	DUF2184 domain-containing protein	A0A0U2QQI2	Escherichia_phage	1.5e-73	45.5
WP_046595057.1\|2814585_2815458_-	hypothetical protein	NA	NA	NA	NA
WP_046595059.1\|2815478_2817053_-	NUDIX domain-containing protein	Q6UJ14	Burkholderia_virus	2.9e-20	48.6
WP_046595062.1\|2817053_2817929_-	hypothetical protein	A0A0U2I1R8	Escherichia_phage	2.9e-54	44.3
WP_001648831.1\|2817900_2819340_-	DUF1073 domain-containing protein	A0A0U2S5X9	Escherichia_phage	9.9e-92	38.0
WP_046595063.1\|2819339_2820611_-	hypothetical protein	A0A0U2JTW9	Escherichia_phage	1.0e-84	38.6
WP_046595066.1\|2820600_2821572_-\|terminase	terminase small subunit	I6NV32	Burkholderia_virus	4.6e-24	32.8
WP_046595068.1\|2821670_2821991_-	negative regulator GrlR	NA	NA	NA	NA
WP_046595070.1\|2822131_2822662_-	DUF2514 family protein	A0A291AXG6	Shigella_phage	1.2e-07	29.1
WP_046595071.1\|2822664_2823081_-	structural protein	A0A0E3GMJ2	Enterobacteria_phage	7.9e-42	57.3
WP_050186221.1\|2823083_2823431_-\|holin	phage holin, lambda family	Q8SBE1	Shigella_phage	1.3e-53	90.7
WP_046595075.1\|2823870_2824449_-	DUF1133 family protein	A0A0U2S606	Escherichia_phage	1.2e-43	51.4
WP_045441384.1\|2824445_2824739_-	DUF1364 domain-containing protein	A0A0U2KD41	Escherichia_phage	3.6e-33	64.2
WP_045441382.1\|2824735_2825332_-	DUF1367 family protein	H9C173	Pectobacterium_phage	1.7e-82	74.7
WP_046595078.1\|2825399_2825591_-	hypothetical protein	NA	NA	NA	NA
WP_046595080.1\|2825976_2827200_+	ATP-binding protein	NA	NA	NA	NA
WP_046595081.1\|2827219_2827750_+	hypothetical protein	NA	NA	NA	NA
WP_046595082.1\|2827793_2828045_-	hypothetical protein	NA	NA	NA	NA
WP_046598784.1\|2828048_2828729_-	hypothetical protein	NA	NA	NA	NA
WP_001648813.1\|2828767_2830156_-	replication protein P	Q8HA30	Enterobacteria_phage	1.2e-107	47.5
WP_046595084.1\|2830152_2831136_-	helix-turn-helix domain-containing protein	H9C164	Pectobacterium_phage	1.2e-43	79.6
WP_001648809.1\|2831138_2831363_-	hypothetical protein	H9C163	Pectobacterium_phage	4.7e-09	46.1
WP_000429172.1\|2831385_2831832_-	hypothetical protein	H9C162	Pectobacterium_phage	1.9e-25	51.1
WP_072053482.1\|2831766_2831970_+	hypothetical protein	NA	NA	NA	NA
WP_000364674.1\|2831896_2832130_-	helix-turn-helix transcriptional regulator	A0A0U2S629	Escherichia_phage	2.9e-09	44.4
WP_024136813.1\|2832238_2832694_+	helix-turn-helix domain-containing protein	A0A0U2QW76	Escherichia_phage	1.7e-34	51.7
WP_046595087.1\|2833380_2833704_+	hypothetical protein	NA	NA	NA	NA
WP_042827223.1\|2833711_2833957_+	hypothetical protein	A0A1B1W282	Salmonella_phage	4.5e-13	53.8
WP_042827221.1\|2833986_2836227_+	hypothetical protein	H9C157	Pectobacterium_phage	1.8e-108	34.8
WP_046595089.1\|2836223_2836778_+	siphovirus Gp157 family protein	H9C156	Pectobacterium_phage	4.9e-47	58.2
WP_000916251.1\|2836780_2836963_+	hypothetical protein	NA	NA	NA	NA
WP_024131616.1\|2837012_2837210_+	hypothetical protein	H9C154	Pectobacterium_phage	8.3e-10	58.5
WP_000196401.1\|2837175_2837400_+	DUF4224 domain-containing protein	NA	NA	NA	NA
WP_046595090.1\|2837400_2838420_+\|integrase	tyrosine-type recombinase/integrase	A0A192Y7M7	Salmonella_phage	2.0e-91	53.2
WP_000374046.1\|2839007_2839667_+\|protease	FtsH protease modulator YccA	A0A2H4JFM9	uncultured_Caudovirales_phage	2.7e-44	52.4
WP_000904446.1\|2839753_2840083_+	sulfurtransferase TusE	NA	NA	NA	NA
WP_000072884.1\|2840079_2840361_-	acylphosphatase	NA	NA	NA	NA
WP_000548082.1\|2840409_2841189_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_000859416.1\|2841214_2841763_-	YbhB/YbcL family Raf kinase inhibitor-like protein	NA	NA	NA	NA
WP_000140474.1\|2841977_2843189_+	23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI	NA	NA	NA	NA
WP_000561983.1\|2843246_2843564_+	heat shock protein HspQ	NA	NA	NA	NA
WP_000975203.1\|2843608_2844025_-	CoA-binding protein	NA	NA	NA	NA
WP_000847732.1\|2844195_2844858_+	DUF2057 family protein	NA	NA	NA	NA
WP_000424187.1\|2844952_2845411_+	methylglyoxal synthase	NA	NA	NA	NA
WP_000420529.1\|2845446_2847501_-	DNA helicase IV	A7KV33	Bacillus_phage	6.5e-20	27.6
WP_001261222.1\|2847624_2848071_+	YccF domain-containing protein	NA	NA	NA	NA
WP_000950883.1\|2848089_2850243_+	TIGR01666 family membrane protein	NA	NA	NA	NA
WP_001202378.1\|2850229_2850838_-	TfoX/Sxy family DNA transformation protein	NA	NA	NA	NA
WP_000288731.1\|2851054_2851564_+	cell division inhibitor SulA	NA	NA	NA	NA
WP_001539650.1\|2851920_2852973_+	porin OmpA	NA	NA	NA	NA
WP_000877172.1\|2853044_2853497_-	macrodomain Ter protein MatP	NA	NA	NA	NA
WP_000156451.1\|2853682_2855443_+\|protease	Lon protease family protein	NA	NA	NA	NA
WP_000227928.1\|2855511_2856030_+	bifunctional 3-hydroxydecanoyl-ACP dehydratase/trans-2-decenoyl-ACP isomerase	NA	NA	NA	NA
WP_001537784.1\|2856129_2856297_-	ribosome modulation factor	NA	NA	NA	NA
WP_000759136.1\|2856552_2857116_-	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA
WP_000433417.1\|2857112_2858753_-	intermembrane transport protein PqiB	NA	NA	NA	NA
WP_149827022.1\|2858757_2860011_-	membrane integrity-associated transporter subunit PqiA	NA	NA	NA	NA
WP_000053044.1\|2860025_2861933_-	ABC transporter ATP-binding protein	A0A2K9L3Z8	Tupanvirus	2.4e-53	29.8
WP_001086477.1\|2861945_2864054_-	bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL	NA	NA	NA	NA
WP_000224080.1\|2864152_2865262_+	MOSC domain-containing protein	NA	NA	NA	NA
WP_001220671.1\|2865258_2865801_-	cell division protein ZapC	NA	NA	NA	NA
WP_000291723.1\|2865966_2866977_-	quinone-dependent dihydroorotate dehydrogenase	NA	NA	NA	NA
2867138:2867156	attL	NA	NA	NA	NA
WP_000193762.1\|2867184_2869797_-	aminopeptidase N	A0A0P0IY26	Acinetobacter_phage	6.3e-20	22.4
WP_000497441.1\|2870223_2870415_+	DinI-like family protein	S4TNM0	Salmonella_phage	6.2e-26	95.2
WP_001525490.1\|2870684_2871371_+	hypothetical protein	NA	NA	NA	NA
WP_010989011.1\|2871355_2871655_+	hypothetical protein	NA	NA	NA	NA
WP_000334548.1\|2871723_2872350_+	SOS response-associated peptidase	A0A2H4J5W2	uncultured_Caudovirales_phage	1.4e-66	63.2
WP_012664643.1\|2872997_2873876_-	SPI-2 type III secretion system effector SseI	Q9MBL9	Phage_Gifsy-2	1.2e-172	99.0
WP_000143167.1\|2874440_2875022_-\|tail	tail fiber assembly protein	A0A0M4RTP2	Salmonella_phage	1.7e-95	89.5
WP_001144684.1\|2875021_2877229_-\|tail	tail protein	E5G6P0	Salmonella_phage	6.2e-77	51.5
WP_000178849.1\|2877282_2877525_-	hypothetical protein	NA	NA	NA	NA
WP_139133709.1\|2877563_2879132_-	DUF1983 domain-containing protein	K7PKJ2	Enterobacteria_phage	7.2e-128	63.9
WP_041030834.1\|2880984_2881689_-\|tail	tail assembly protein	A5LH42	Enterobacteria_phage	3.2e-67	63.1
WP_000606351.1\|2881586_2882324_-\|tail	phage tail protein	A0A0P0ZE89	Stx2-converting_phage	1.6e-114	76.1
WP_001152415.1\|2882333_2883029_-\|tail	phage minor tail protein L	A0A0K2FJ01	Enterobacteria_phage	1.3e-89	66.7
WP_000877926.1\|2883118_2883652_+	superoxide dismutase [Cu-Zn]	Q9MC02	Salmonella_phage	1.8e-46	54.0
WP_000725267.1\|2883768_2884266_-	outer membrane beta-barrel protein	A0A1B0VBR9	Salmonella_phage	1.4e-16	36.6
WP_000978295.1\|2884364_2884697_-\|tail	phage tail protein	A5LH39	Enterobacteria_phage	2.6e-35	61.5
WP_010989010.1\|2884693_2887681_-\|tail	phage tail tape measure protein	A0A291AWX1	Escherichia_phage	8.2e-266	62.1
WP_010989009.1\|2887760_2888090_-\|tail	phage tail assembly protein T	A5LH37	Enterobacteria_phage	5.0e-23	50.9
WP_000478859.1\|2888086_2888485_-\|tail	phage minor tail protein G	K7PLV8	Enterobacteria_phage	8.6e-30	56.8
WP_000132756.1\|2888530_2889280_-\|tail	tail protein	A0A291AWU6	Escherichia_phage	3.7e-90	68.6
WP_000196703.1\|2889291_2889693_-\|tail	tail protein	K7PHM6	Enterobacterial_phage	2.0e-42	60.9
WP_000453192.1\|2889689_2890256_-\|tail	phage tail protein	Q9G063	Phage_Gifsy-2	2.1e-13	95.7
WP_000774239.1\|2890236_2890536_-	ATP-binding protein	K7PH43	Enterobacteria_phage	4.5e-15	45.1
WP_001107905.1\|2890528_2890852_-	DUF2190 family protein	K7PLV6	Enterobacteria_phage	6.6e-28	60.4
WP_077906341.1\|2890942_2893024_-\|protease	Clp protease ClpP	A0A291AWT6	Escherichia_phage	3.1e-264	69.3
WP_077906340.1\|2892947_2894465_-\|portal	phage portal protein	A0A291AWU2	Escherichia_phage	7.5e-175	64.9
WP_000196190.1\|2894491_2894698_-	hypothetical protein	A0A1W6JT66	Pseudomonas_phage	2.9e-05	53.3
WP_000989240.1\|2894694_2896833_-\|terminase	phage terminase large subunit family protein	A5LH27	Enterobacteria_phage	2.2e-289	72.5
WP_000371784.1\|2896789_2897323_-	DUF1441 family protein	A0A291AWV8	Escherichia_phage	1.0e-33	48.1
WP_110161804.1\|2897619_2897808_-	hypothetical protein	A0A0P0ZE50	Stx2-converting_phage	2.9e-12	66.7
WP_000984586.1\|2898027_2898480_-	lysozyme	A0A0M4R365	Salmonella_phage	2.3e-79	97.3
WP_077905918.1\|2898463_2898793_-\|holin	phage holin, lambda family	A0A0M3ULK9	Salmonella_phage	2.2e-55	99.1
WP_001539630.1\|2899068_2899755_+	PipA/GogA/GtgA family type III secretion system effector	Q9MBM0	Phage_Gifsy-2	1.8e-131	99.1
WP_000798706.1\|2900115_2900565_+	lipoprotein	NA	NA	NA	NA
WP_024131667.1\|2900729_2900939_-	hypothetical protein	H6WRZ2	Salmonella_phage	3.5e-22	98.1
WP_001047630.1\|2901110_2901908_-	antitermination protein	A0A0M4S661	Salmonella_phage	4.0e-151	99.6
WP_001617856.1\|2901897_2902044_-	YlcG family protein	A0A0M5M7B2	Salmonella_phage	4.3e-19	97.9
WP_001096557.1\|2902040_2902652_-	hypothetical protein	A0A0M4RU10	Salmonella_phage	3.6e-91	96.1
WP_001241019.1\|2902654_2902861_-	hypothetical protein	S4TNP0	Salmonella_phage	3.5e-35	100.0
WP_000929798.1\|2902860_2903463_-	DUF1367 family protein	S4TTI0	Salmonella_phage	1.7e-109	99.5
WP_014343878.1\|2903497_2903746_-	hypothetical protein	A0A0U2C0C8	Salmonella_phage	1.6e-42	100.0
WP_001217669.1\|2903862_2904096_-	DinI family protein	H6WRY5	Salmonella_phage	5.6e-37	100.0
WP_001220149.1\|2904251_2904518_-	hypothetical protein	H6WRY4	Salmonella_phage	1.3e-45	98.9
WP_000664367.1\|2904616_2905414_-	hypothetical protein	A0A1R3Y5Q8	Salmonella_virus	1.7e-32	81.9
WP_000801767.1\|2905427_2906123_-	hypothetical protein	G8C7U6	Escherichia_phage	1.5e-56	45.9
WP_000024045.1\|2906119_2906947_-	replication protein	K7PGT1	Enterobacteria_phage	8.3e-51	48.5
WP_015702794.1\|2907038_2907413_-	hypothetical protein	S4TTD7	Salmonella_phage	3.3e-63	98.4
WP_000145711.1\|2907378_2907606_-	Rha family transcriptional regulator	K7PKS2	Enterobacteria_phage	1.5e-34	95.9
WP_001151473.1\|2907619_2908087_+	helix-turn-helix domain-containing protein	K7PHG0	Enterobacteria_phage	3.0e-66	83.9
WP_001170496.1\|2908237_2908711_+	hypothetical protein	K7PLT9	Enterobacteria_phage	2.3e-53	59.1
WP_000997167.1\|2908707_2909640_+	hypothetical protein	K7PGT0	Enterobacteria_phage	9.6e-88	53.2
WP_000373338.1\|2909672_2909879_-	hypothetical protein	K7P7I0	Enterobacteria_phage	1.6e-16	67.6
WP_000017137.1\|2910948_2913876_+	exodeoxyribonuclease	S4TNL0	Salmonella_phage	0.0e+00	99.8
WP_001539618.1\|2913838_2914996_+	recombinase RecT	S4TTE8	Salmonella_phage	1.6e-217	100.0
WP_001237031.1\|2915038_2915278_+	DUF4060 family protein	S4TR31	Salmonella_phage	2.0e-37	100.0
WP_000065276.1\|2915318_2915567_+	excisionase family protein	S4TND0	Salmonella_phage	4.7e-42	100.0
WP_001262312.1\|2915611_2916904_+\|integrase	site-specific integrase	S4TSP2	Salmonella_phage	8.5e-252	99.8
WP_000191404.1\|2917098_2918301_+	nicotinate phosphoribosyltransferase	NA	NA	NA	NA
WP_000893204.1\|2918378_2919815_-	sodium:alanine symporter family protein	NA	NA	NA	NA
WP_000544852.1\|2920060_2921275_-	diaminopropionate ammonia-lyase	NA	NA	NA	NA
WP_000762342.1\|2921592_2922054_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA
WP_000117871.1\|2922254_2923655_+\|tRNA	asparagine--tRNA ligase	A0A167RLM0	Powai_lake_megavirus	1.7e-80	34.9
WP_000977709.1\|2924261_2925353_+	porin OmpF	Q1MVN1	Enterobacteria_phage	1.7e-99	51.7
WP_149827024.1\|2925537_2926728_+	aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA
WP_001109471.1\|2926789_2927437_-	MBL fold metallo-hydrolase	NA	NA	NA	NA
WP_000357053.1\|2927464_2928013_-	YcbK family protein	A0A0K1LKR7	Rhodobacter_phage	1.2e-05	33.7
WP_000925873.1\|2928272_2930120_-	L,D-transpeptidase	NA	NA	NA	NA
WP_001539612.1\|2930464_2934931_-	chromosome partition protein MukB	NA	NA	NA	NA
WP_000060025.1\|2934930_2935635_-	chromosome partition protein MukE	NA	NA	NA	NA
WP_149827026.1\|2935615_2936938_-	chromosome partition protein MukF	NA	NA	NA	NA
WP_001154028.1\|2936930_2937734_-\|tRNA	tRNA uridine 5-oxyacetic acid(34) methyltransferase CmoM	NA	NA	NA	NA
WP_000899553.1\|2937869_2938646_+	envelope biogenesis factor ElyC	NA	NA	NA	NA
WP_000436889.1\|2938625_2939519_-	YcbJ family phosphotransferase	NA	NA	NA	NA
WP_000011576.1\|2939729_2940476_-	3-deoxy-manno-octulosonate cytidylyltransferase	NA	NA	NA	NA
WP_000350061.1\|2940472_2940655_-	protein YcaR	NA	NA	NA	NA
WP_000056908.1\|2940706_2941939_-	winged helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_000561679.1\|2941982_2942960_-	tetraacyldisaccharide 4'-kinase	NA	NA	NA	NA
WP_000551246.1\|2942956_2944705_-	lipid A ABC transporter ATP-binding protein/permease MsbA	W8CYL7	Bacillus_phage	3.2e-60	30.5
WP_086011253.1\|2947183_2948439_-\|transposase	IS3-like element ISSen1 family transposase	Q6H9S3	Enterobacteria_phage	2.2e-18	34.5
WP_000167332.1\|2948551_2948836_-	integration host factor subunit beta	A7KV42	Bacillus_phage	4.1e-10	40.2
WP_000140324.1\|2948991_2950665_-	30S ribosomal protein S1	NA	NA	NA	NA
WP_000125007.1\|2950778_2951462_-	(d)CMP kinase	NA	NA	NA	NA
WP_149827028.1\|2951634_2952396_-\|protease	M48 family metalloprotease	NA	NA	NA	NA
WP_000445191.1\|2952538_2953822_-	3-phosphoshikimate 1-carboxyvinyltransferase	NA	NA	NA	NA
WP_000079591.1\|2953887_2954976_-	3-phosphoserine/phosphohydroxythreonine transaminase	M1Q1P2	Streptococcus_phage	2.1e-78	46.5
WP_000642866.1\|2955161_2955854_-	DUF421 domain-containing protein	NA	NA	NA	NA
WP_023234775.1\|2955990_2957751_+	hypothetical protein	NA	NA	NA	NA
WP_000642539.1\|2958155_2959013_+	formate transporter FocA	NA	NA	NA	NA
WP_001292804.1\|2959072_2961355_+	formate C-acetyltransferase	A0A2P0VNR5	Tetraselmis_virus	1.4e-161	42.0
WP_001145563.1\|2961430_2962390_-	SPI-2 type III secretion system effector SopD2	NA	NA	NA	NA
WP_077905879.1\|2962577_2962847_+	cytoplasmic protein	NA	NA	NA	NA
WP_012539861.1\|2962938_2963763_+	pyruvate formate lyase 1-activating protein	A0A2P0VNQ0	Tetraselmis_virus	2.8e-22	26.5
WP_001134270.1\|2964055_2965477_-	amino acid permease	NA	NA	NA	NA
WP_000109274.1\|2965694_2966843_-	MFS transporter	NA	NA	NA	NA
WP_000534681.1\|2967192_2968056_-	dimethyl sulfoxide reductase anchor subunit	NA	NA	NA	NA
WP_000213069.1\|2968057_2968675_-	dimethylsulfoxide reductase subunit B	A0A077SL61	Escherichia_phage	4.3e-76	59.6
WP_149827031.1\|2968685_2971130_-	dimethylsulfoxide reductase subunit A	A0A077SK27	Escherichia_phage	5.4e-223	50.5
WP_000887397.1\|2971366_2972659_-\|tRNA	serine--tRNA ligase	A0A1B1IVT2	uncultured_Mediterranean_phage	5.0e-95	44.2
WP_000067792.1\|2972917_2974261_-	replication-associated recombination protein A	G3MBE0	Bacillus_virus	1.6e-80	40.9
WP_024131664.1\|2974270_2974882_-	outer membrane lipoprotein chaperone LolA	NA	NA	NA	NA
WP_149827033.1\|2975024_2979101_-	DNA translocase FtsK	S5VNE3	Mycobacterium_phage	2.9e-88	49.5
WP_000228469.1\|2979235_2979730_-	leucine-responsive transcriptional regulator Lrp	NA	NA	NA	NA
WP_000537400.1\|2980276_2981245_+	thioredoxin-disulfide reductase	A0A2I2L5E1	Orpheovirus	2.5e-62	45.2
WP_023260425.1\|2981358_2983125_+	cysteine/glutathione ABC transporter permease/ATP-binding protein CydD	W8CYL7	Bacillus_phage	7.8e-22	25.1
WP_001202248.1\|2983125_2984847_+	cysteine/glutathione ABC transporter ATP-binding protein/permease CydC	W8CYL7	Bacillus_phage	6.4e-13	23.3
WP_001241650.1\|2984891_2985596_+\|tRNA	leucyl/phenylalanyl-tRNA--protein transferase	NA	NA	NA	NA
WP_001539595.1\|2985596_2985980_+	membrane protein	NA	NA	NA	NA
WP_001040187.1\|2985907_2986126_+	translation initiation factor IF-1	NA	NA	NA	NA
WP_000597928.1\|2986216_2987128_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_000809969.1\|2987236_2988097_+	pirin family protein	NA	NA	NA	NA
WP_000097893.1\|2988116_2988794_+	hydrolase	NA	NA	NA	NA
WP_001539594.1\|2989458_2989836_+\|integrase	integrase	A0A077KET4	Ralstonia_phage	1.2e-20	41.0
WP_001117984.1\|2989997_2990195_+	hypothetical protein	NA	NA	NA	NA
WP_000934064.1\|2990407_2992684_-\|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	A0A223W0B1	Agrobacterium_phage	6.2e-165	42.3
WP_000520789.1\|2992714_2993035_-\|protease	ATP-dependent Clp protease adapter ClpS	A0A1B1IT64	uncultured_Mediterranean_phage	4.5e-13	45.7
WP_000447499.1\|2993358_2993580_+	cold shock-like protein CspD	A0A2H4N7Y6	Lake_Baikal_phage	9.3e-18	64.2
WP_000125882.1\|2993709_2995656_-	macrolide ABC transporter ATP-binding protein/permease MacB	G9BWD6	Planktothrix_phage	1.6e-39	43.1
WP_149827035.1\|2995652_2996771_-	macrolide transporter subunit MacA	A0A140XAI1	Dickeya_phage	4.0e-08	38.1
3003421:3003439	attR	NA	NA	NA	NA

DBSCAN-SWA_5

3031284 : 3060740

Cronobacter_phage(78.12%)

head,integrase,portal,tail,holin,capsid,terminase

attL 3030094:3030111|attR 3060815:3060832

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
3030094:3030111	attL	NA	NA	NA	NA
WP_001748638.1\|3031284_3032985_-	hypothetical protein	F1BUJ7	Cronobacter_phage	4.4e-224	81.4
WP_149827041.1\|3032987_3033533_-	hypothetical protein	F1BUJ9	Cronobacter_phage	2.8e-63	72.0
WP_000267958.1\|3033504_3034230_-	hypothetical protein	F1BUK1	Cronobacter_phage	3.8e-68	56.8
WP_000122988.1\|3034219_3034774_-\|tail	tail fiber assembly protein	S4TUB9	Salmonella_phage	1.8e-94	93.9
WP_149827043.1\|3034786_3036943_-\|tail	phage tail protein	Q6K1H2	Salmonella_virus	6.9e-190	65.2
WP_001001824.1\|3036952_3037540_-	hypothetical protein	F1BUK5	Cronobacter_phage	1.1e-89	82.1
WP_000136928.1\|3037532_3038717_-	hypothetical protein	F1BUK6	Cronobacter_phage	1.7e-177	78.1
WP_001002797.1\|3038713_3039043_-	DUF2590 family protein	F1BUK8	Cronobacter_phage	3.8e-39	72.4
WP_000811084.1\|3039039_3041010_-\|tail	phage tail tape measure protein	F1BUK9	Cronobacter_phage	7.1e-258	67.9
WP_000411339.1\|3041197_3041455_-	hypothetical protein	A5X9I7	Aeromonas_virus	3.6e-21	63.4
WP_001270303.1\|3041441_3041630_-	hypothetical protein	F1BUL1	Cronobacter_phage	1.1e-22	80.6
WP_000376370.1\|3041601_3041934_-	hypothetical protein	F1BUL2	Cronobacter_phage	6.7e-36	70.9
WP_000175560.1\|3041933_3042275_-	M15 family metallopeptidase	F1BUL3	Cronobacter_phage	2.2e-50	91.1
WP_001154425.1\|3042271_3042565_-\|holin	holin	C7BGD7	Burkholderia_phage	1.3e-14	46.2
WP_000166743.1\|3042574_3043030_-	DUF2597 family protein	F1BUL4	Cronobacter_phage	1.5e-57	72.2
WP_000220203.1\|3043026_3044154_-	DUF2586 domain-containing protein	F1BUL5	Cronobacter_phage	1.9e-175	83.7
WP_000084220.1\|3044854_3045361_-\|tail	phage tail protein	F1BUL7	Cronobacter_phage	5.2e-64	69.8
WP_000447487.1\|3045357_3045846_-\|head	head completion/stabilization protein	F1BUL8	Cronobacter_phage	2.3e-64	82.7
WP_001218537.1\|3045906_3046608_-\|terminase	terminase	F1BUM0	Cronobacter_phage	9.4e-88	66.8
WP_000550496.1\|3046611_3047634_-\|capsid	phage major capsid protein, P2 family	F1BUM2	Cronobacter_phage	1.1e-158	81.2
WP_000018801.1\|3047695_3048499_-\|capsid	phage capsid scaffolding protein	F1BUM4	Cronobacter_phage	9.1e-79	56.4
WP_149827045.1\|3048659_3050435_+\|terminase	terminase	F1BUM5	Cronobacter_phage	2.8e-290	82.8
WP_000038208.1\|3050431_3051493_+\|portal	phage portal protein	F1BUM7	Cronobacter_phage	2.3e-162	77.1
WP_001552031.1\|3051489_3051813_+	ogr/Delta-like zinc finger family protein	F1BUM8	Cronobacter_phage	8.0e-50	92.3
WP_000960960.1\|3051786_3052005_-	hypothetical protein	E5G6M0	Salmonella_phage	2.8e-06	49.1
WP_000170881.1\|3052117_3054139_-	replication endonuclease	F1BUM9	Cronobacter_phage	3.6e-297	74.6
WP_000279400.1\|3054135_3054996_-	Dam family site-specific DNA-(adenine-N6)-methyltransferase	F1BUN1	Cronobacter_phage	1.5e-132	83.5
WP_000057334.1\|3054986_3055217_-	DUF2732 family protein	NA	NA	NA	NA
WP_000022789.1\|3055284_3055686_-	hypothetical protein	F1BUN2	Cronobacter_phage	1.4e-48	66.9
WP_000996837.1\|3055685_3056111_-	hypothetical protein	F1BUN5	Cronobacter_phage	2.2e-23	49.6
WP_000643375.1\|3056100_3056328_-	DUF2724 domain-containing protein	NA	NA	NA	NA
WP_000460872.1\|3056337_3056841_-	hypothetical protein	F1BUN6	Cronobacter_phage	1.7e-59	71.3
WP_024131661.1\|3056870_3057092_-	hypothetical protein	NA	NA	NA	NA
WP_001008375.1\|3057220_3057790_+	phage repressor protein CI	A0A1S6KZZ7	Salmonella_phage	5.4e-33	39.8
WP_000357961.1\|3057801_3059583_+	AIPR family protein	NA	NA	NA	NA
WP_024131660.1\|3059687_3060740_+\|integrase	tyrosine-type recombinase/integrase	A0A218M4I3	Erwinia_phage	5.2e-106	56.4
3060815:3060832	attR	NA	NA	NA	NA

DBSCAN-SWA_6

4421118 : 4468001

Burkholderia_phage(40.91%)

tail,plate,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001182218.1\|4421118_4422117_-\|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	NA	NA	NA	NA
WP_001039346.1\|4422204_4423515_-	conjugal transfer protein TraF	NA	NA	NA	NA
WP_000416267.1\|4423761_4424277_+	zinc uptake transcriptional repressor Zur	NA	NA	NA	NA
WP_001030592.1\|4424376_4424586_-	CsbD family protein	NA	NA	NA	NA
WP_010989093.1\|4424607_4424721_-	hypothetical protein	NA	NA	NA	NA
WP_000646079.1\|4426216_4426825_-	repressor LexA	Q9G0C2	Lactococcus_phage	1.0e-13	38.0
WP_000002900.1\|4426933_4427302_-	diacylglycerol kinase	NA	NA	NA	NA
WP_000017360.1\|4427472_4429893_+	glycerol-3-phosphate 1-O-acyltransferase PlsB	NA	NA	NA	NA
WP_000455248.1\|4429991_4430864_-	4-hydroxybenzoate octaprenyltransferase	NA	NA	NA	NA
WP_000019230.1\|4430877_4431375_-	chorismate lyase	NA	NA	NA	NA
WP_000782497.1\|4431555_4432473_-	maltose operon protein MalM	NA	NA	NA	NA
WP_000973642.1\|4432636_4433995_-	maltoporin	NA	NA	NA	NA
WP_000179176.1\|4434083_4435193_-	maltose/maltodextrin ABC transporter ATP-binding protein MalK	Q6GZ03	Mycoplasma_phage	6.2e-17	47.2
WP_000695415.1\|4435554_4436745_+	maltose/maltodextrin ABC transporter substrate-binding protein MalE	NA	NA	NA	NA
WP_000382570.1\|4436876_4438421_+	maltose ABC transporter permease MalF	NA	NA	NA	NA
WP_001252086.1\|4438435_4439326_+	maltose ABC transporter permease MalG	NA	NA	NA	NA
WP_000982749.1\|4439491_4439902_-	phosphate-starvation-inducible protein PsiE	NA	NA	NA	NA
WP_000750792.1\|4440044_4442141_-	YjbH domain-containing protein	NA	NA	NA	NA
WP_000977962.1\|4442140_4442878_-	capsule biosynthesis GfcC family protein	NA	NA	NA	NA
WP_000824806.1\|4442874_4443513_-	YjbF family lipoprotein	NA	NA	NA	NA
WP_001541297.1\|4443576_4443819_-	outer membrane protein	NA	NA	NA	NA
WP_000790028.1\|4444262_4445912_-	glucose-6-phosphate isomerase	NA	NA	NA	NA
WP_000136395.1\|4446256_4447606_+	lysine-sensitive aspartokinase 3	NA	NA	NA	NA
WP_000615249.1\|4447658_4448006_-	DNA-binding protein	Q6QIE8	Burkholderia_phage	1.7e-21	51.5
WP_001226439.1\|4448580_4448868_+	membrane protein	Q6QIC8	Burkholderia_phage	3.0e-16	48.1
WP_001270437.1\|4448870_4449476_+	transglycosylase SLT domain-containing protein	Q5ZQZ1	Pseudomonas_phage	8.4e-61	60.4
WP_000777267.1\|4449488_4449803_+	hypothetical protein	Q6QIC4	Burkholderia_phage	8.3e-20	48.2
WP_000449439.1\|4449961_4450417_+	hypothetical protein	NA	NA	NA	NA
WP_000875314.1\|4450413_4450611_+	hypothetical protein	Q6QIB1	Burkholderia_phage	8.6e-07	52.9
WP_000729853.1\|4450600_4452028_+\|tail	phage tail sheath family protein	A4JWK5	Burkholderia_virus	1.4e-194	70.9
WP_000907494.1\|4452027_4452552_+\|tail	phage major tail tube protein	Q6QIA9	Burkholderia_phage	2.8e-68	69.5
WP_001003641.1\|4452603_4452921_+\|tail	phage tail assembly protein	NA	NA	NA	NA
WP_001185655.1\|4452880_4453009_+\|tail	GpE family phage tail protein	NA	NA	NA	NA
WP_001262482.1\|4453105_4455460_+\|tail	phage tail tape measure protein	A4JWL0	Burkholderia_virus	9.0e-66	31.2
WP_000271432.1\|4455459_4456413_+	chemotaxis protein	A4JWL1	Burkholderia_virus	7.9e-37	51.5
WP_001269715.1\|4456412_4456622_+	membrane protein	A4JWL2	Burkholderia_virus	2.6e-17	58.8
WP_000818153.1\|4456609_4457653_+	phage late control D family protein	Q6QIA2	Burkholderia_phage	1.2e-75	45.1
WP_001541288.1\|4457662_4458385_+\|plate	phage baseplate assembly protein V	A0A067ZIM2	Vibrio_phage	3.9e-12	42.0
WP_071786937.1\|4458393_4458636_+	hypothetical protein	NA	NA	NA	NA
WP_000593182.1\|4458711_4459074_+	GtrA family protein	I1TED9	Salmonella_phage	1.2e-43	70.8
WP_000703637.1\|4459070_4460000_+	glycosyltransferase family 2 protein	S5FKN0	Shigella_phage	2.0e-149	83.4
WP_000632047.1\|4459999_4461547_+	hypothetical protein	B9UDL6	Salmonella_phage	2.5e-48	29.9
WP_001093501.1\|4461710_4462070_+\|plate	baseplate protein	Q6QIA0	Burkholderia_phage	2.8e-35	64.2
WP_000951730.1\|4462060_4463176_+\|plate	baseplate protein	Q6QI99	Burkholderia_phage	3.1e-101	52.2
WP_000359503.1\|4463168_4463801_+\|tail	phage tail protein I	Q6QI98	Burkholderia_phage	1.1e-23	56.4
WP_000368206.1\|4463803_4465462_+\|tail	tail protein	A0A0M3ULH6	Salmonella_phage	1.8e-52	40.5
WP_001151757.1\|4465468_4466083_+	DUF4376 domain-containing protein	NA	NA	NA	NA
WP_000084338.1\|4466079_4466535_+	hypothetical protein	NA	NA	NA	NA
WP_000587743.1\|4467272_4468001_+	hypothetical protein	A0A292GAQ8	Xanthomonas_phage	3.5e-13	28.2

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_CP043774

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

19993 : 26897

Escherichia_phage(33.33%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000925627.1\|19993_20416_+	translesion error-prone DNA polymerase V autoproteolytic subunit	A0A1W6JNS2	Morganella_phage	1.0e-28	51.6
WP_000457543.1\|20415_21690_+	Y-family DNA polymerase	F1C5A5	Cronobacter_phage	4.3e-155	64.0
WP_077906345.1\|21771_22749_-	ParB/RepB/Spo0J family partition protein	A0A1B0V750	Salmonella_phage	1.1e-83	52.9
WP_000427676.1\|22745_23951_-	ParA family protein	A0A077SL49	Escherichia_phage	1.5e-162	69.3
WP_000728917.1\|24365_25307_+\|transposase	Rpn family recombination-promoting nuclease/putative transposase	Q2A0A7	Sodalis_phage	2.0e-72	54.3
WP_001541562.1\|25338_25905_-	DUF2913 family protein	NA	NA	NA	NA
WP_001527010.1\|25961_26297_-	hypothetical protein	NA	NA	NA	NA
WP_041030921.1\|26480_26897_-	hypothetical protein	O64348	Escherichia_phage	8.2e-07	42.9

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP043773

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NZ_CP043774

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection