CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP040671	Thermosynechococcus sp. CL-1 chromosome, complete genome	7 crisprs	csm3gr7,cmr5gr11,cmr4gr7,cmr3gr5,cas10,csa3,cas5,cas7,cas8b3,cas3,cas6,cas2,cas1,DinG,PD-DExK	0	11	1	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP040671_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP040671_1

473536-474578

Unclear

I-A,I-B,II-B

Consensus_repeat	Method
GTGCTCAACGCCTTACGGCATCAAAGGTAGAGGCAC	CRT
GTGCTCAACGCCTTACGGCATCAAAGGTAGAGGCAC	PILER-CR
GTGCTCAACGCCTTACGGCATCAAAGGTAGAGGCAC	CRISPRCasFinder

14 spacers

cas6,cas3,cas8b3,cas7,cas5,cas2,cas1

The CRISPR arrays of NZ_CP040671_1

>merge|NZ_CP040671|1|473536-474578|CRT,PILER-CR,CRISPRCasFinder
CGCTGGGCTAGCCCACAGCACCAGAGGTAGAGGCACCGACCATGGTTCGCGATAACGGGCTTATTCGCTGGGTGCTCAACGCCTTACGGCATCAAAGGTAGAGGCACGACTTGAGGCAGCGTCTTTGGTTGATTTTTGCTGGTGCTCAACGCCTTACGGCATCAAAGGTAGAGGCACGTGACTGGAACCACAAGAGGAGTTGTGAAGTAGGGTGCTCAACGCCTTACGGCATCAAAGGTAGAGGCACGGCGTTGGTCACCTATCTATCTATGGCATTGGGGTGCTCAACGCCTTACGGCATCAAAGGTAGAGGCACGTCGACGACCTAGGCAAGAACAGGACAGCGACAGGAAGTGCTCAACGCCTTACGGCATCAAAGGTAGAGGCACATCCACCGTTAGGTGGTAAGTAGTAGCACAAGGGTGCTCAACGCCTTACGGCATCAAAGGTAGAGGCACATCCCCACGACTACTGCTCCATCCCCACGACTACTGCTCGTGCTCAACGCCTTACGGCATCAAAGGTAGAGGCACTTGCTCCTTGGCGGAGCAAGCCATACTCAAGTTTAGTGCTCAACGCCTTACGGCATCAAAGGTAGAGGCACCCTCCCCCGTCCTCCCCGTCCTCTTTCTGTGCCTCCCCGTGCTCAACGCCTTACGGCATCAAAGGTAGAGGCACCAGAGGACAAGGCGGAACAGAAAGAGGACGGGCAGAGGAGTGCTCAACGCCTTACGGCATCAAAGGTAGAGGCACTTAGTGATGCTGAATATTGTTAAGAACCCCTCTTGTGCTCAACGCCTTACGGCATCAAAGGTAGAGGCACAGGCAAACGATAATGATGCAGTTCCTAGTAACCCTAAGTGCTCAACGCCTTACGGCATCAAAGGTAGAGGCACCTACTGCTGCCCCGTCCCGTGCTCAGCGCCCTAAGGGTGCTCAACGCCTTACGGCATCAAAGGTAGAGGCACTTCGTGTTGCATTAGTAGAGAGAGCGCAGCGGGTTGCTTGTGCTCAACGCCTTACGGCATCAAAGGTAGAGGCAC

>NZ_CP040671|1|1|473536-474578|CRT
CGCTGGGCTAGCCCACAGCACCAGAGGTAGAGGCAC	CGACCATGGTTCGCGATAACGGGCTTATTCGCTGG
GTGCTCAACGCCTTACGGCATCAAAGGTAGAGGCAC	GACTTGAGGCAGCGTCTTTGGTTGATTTTTGCTG
GTGCTCAACGCCTTACGGCATCAAAGGTAGAGGCAC	GTGACTGGAACCACAAGAGGAGTTGTGAAGTAGG
GTGCTCAACGCCTTACGGCATCAAAGGTAGAGGCAC	GGCGTTGGTCACCTATCTATCTATGGCATTGGG
GTGCTCAACGCCTTACGGCATCAAAGGTAGAGGCAC	GTCGACGACCTAGGCAAGAACAGGACAGCGACAGGAA
GTGCTCAACGCCTTACGGCATCAAAGGTAGAGGCAC	ATCCACCGTTAGGTGGTAAGTAGTAGCACAAGG
GTGCTCAACGCCTTACGGCATCAAAGGTAGAGGCAC	ATCCCCACGACTACTGCTCCATCCCCACGACTACTGCTC
GTGCTCAACGCCTTACGGCATCAAAGGTAGAGGCAC	TTGCTCCTTGGCGGAGCAAGCCATACTCAAGTTTA
GTGCTCAACGCCTTACGGCATCAAAGGTAGAGGCAC	CCTCCCCCGTCCTCCCCGTCCTCTTTCTGTGCCTCCCC
GTGCTCAACGCCTTACGGCATCAAAGGTAGAGGCAC	CAGAGGACAAGGCGGAACAGAAAGAGGACGGGCAGAGGA
GTGCTCAACGCCTTACGGCATCAAAGGTAGAGGCAC	TTAGTGATGCTGAATATTGTTAAGAACCCCTCTT
GTGCTCAACGCCTTACGGCATCAAAGGTAGAGGCAC	AGGCAAACGATAATGATGCAGTTCCTAGTAACCCTAA
GTGCTCAACGCCTTACGGCATCAAAGGTAGAGGCAC	CTACTGCTGCCCCGTCCCGTGCTCAGCGCCCTAAGG
GTGCTCAACGCCTTACGGCATCAAAGGTAGAGGCAC	TTCGTGTTGCATTAGTAGAGAGAGCGCAGCGGGTTGCTT
GTGCTCAACGCCTTACGGCATCAAAGGTAGAGGCAC

>NZ_CP040671|1|1|473607-474578|PILER-CR
GTGCTCAACGCCTTACGGCATCAAAGGTAGAGGCAC	GACTTGAGGCAGCGTCTTTGGTTGATTTTTGCTG
GTGCTCAACGCCTTACGGCATCAAAGGTAGAGGCAC	GTGACTGGAACCACAAGAGGAGTTGTGAAGTAGG
GTGCTCAACGCCTTACGGCATCAAAGGTAGAGGCAC	GGCGTTGGTCACCTATCTATCTATGGCATTGGG
GTGCTCAACGCCTTACGGCATCAAAGGTAGAGGCAC	GTCGACGACCTAGGCAAGAACAGGACAGCGACAGGAA
GTGCTCAACGCCTTACGGCATCAAAGGTAGAGGCAC	ATCCACCGTTAGGTGGTAAGTAGTAGCACAAGG
GTGCTCAACGCCTTACGGCATCAAAGGTAGAGGCAC	ATCCCCACGACTACTGCTCCATCCCCACGACTACTGCTC
GTGCTCAACGCCTTACGGCATCAAAGGTAGAGGCAC	TTGCTCCTTGGCGGAGCAAGCCATACTCAAGTTTA
GTGCTCAACGCCTTACGGCATCAAAGGTAGAGGCAC	CCTCCCCCGTCCTCCCCGTCCTCTTTCTGTGCCTCCCC
GTGCTCAACGCCTTACGGCATCAAAGGTAGAGGCAC	CAGAGGACAAGGCGGAACAGAAAGAGGACGGGCAGAGGA
GTGCTCAACGCCTTACGGCATCAAAGGTAGAGGCAC	TTAGTGATGCTGAATATTGTTAAGAACCCCTCTT
GTGCTCAACGCCTTACGGCATCAAAGGTAGAGGCAC	AGGCAAACGATAATGATGCAGTTCCTAGTAACCCTAA
GTGCTCAACGCCTTACGGCATCAAAGGTAGAGGCAC	CTACTGCTGCCCCGTCCCGTGCTCAGCGCCCTAAGG
GTGCTCAACGCCTTACGGCATCAAAGGTAGAGGCAC	TTCGTGTTGCATTAGTAGAGAGAGCGCAGCGGGTTGCTT
GTGCTCAACGCCTTACGGCATCAAAGGTAGAGGCAC

>NZ_CP040671|1|1|473607-474578|CRISPRCasFinder
GTGCTCAACGCCTTACGGCATCAAAGGTAGAGGCAC	GACTTGAGGCAGCGTCTTTGGTTGATTTTTGCTG
GTGCTCAACGCCTTACGGCATCAAAGGTAGAGGCAC	GTGACTGGAACCACAAGAGGAGTTGTGAAGTAGG
GTGCTCAACGCCTTACGGCATCAAAGGTAGAGGCAC	GGCGTTGGTCACCTATCTATCTATGGCATTGGG
GTGCTCAACGCCTTACGGCATCAAAGGTAGAGGCAC	GTCGACGACCTAGGCAAGAACAGGACAGCGACAGGAA
GTGCTCAACGCCTTACGGCATCAAAGGTAGAGGCAC	ATCCACCGTTAGGTGGTAAGTAGTAGCACAAGG
GTGCTCAACGCCTTACGGCATCAAAGGTAGAGGCAC	ATCCCCACGACTACTGCTCCATCCCCACGACTACTGCTC
GTGCTCAACGCCTTACGGCATCAAAGGTAGAGGCAC	TTGCTCCTTGGCGGAGCAAGCCATACTCAAGTTTA
GTGCTCAACGCCTTACGGCATCAAAGGTAGAGGCAC	CCTCCCCCGTCCTCCCCGTCCTCTTTCTGTGCCTCCCC
GTGCTCAACGCCTTACGGCATCAAAGGTAGAGGCAC	CAGAGGACAAGGCGGAACAGAAAGAGGACGGGCAGAGGA
GTGCTCAACGCCTTACGGCATCAAAGGTAGAGGCAC	TTAGTGATGCTGAATATTGTTAAGAACCCCTCTT
GTGCTCAACGCCTTACGGCATCAAAGGTAGAGGCAC	AGGCAAACGATAATGATGCAGTTCCTAGTAACCCTAA
GTGCTCAACGCCTTACGGCATCAAAGGTAGAGGCAC	CTACTGCTGCCCCGTCCCGTGCTCAGCGCCCTAAGG
GTGCTCAACGCCTTACGGCATCAAAGGTAGAGGCAC	TTCGTGTTGCATTAGTAGAGAGAGCGCAGCGGGTTGCTT
GTGCTCAACGCCTTACGGCATCAAAGGTAGAGGCAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP040671.1\|WP_149817839.1\|480015_481068_+\|adenosine-deaminase	unknown	unknown	gnl\|CDD\|224729
NZ_CP040671.1\|WP_149817810.1\|463295_464690_+\|histidine-kinase	unknown	unknown	gnl\|CDD\|223715
NZ_CP040671.1\|WP_149817845.1\|483666_485193_-\|right-handed-parallel-beta-helix-repeat-containing-protein	unknown	unknown	gnl\|CDD\|379079
NZ_CP040671.1\|WP_149817819.1\|467283_467949_-\|CRISPR-associated-protein-Cas5	cas5	cd09688_cas5_CAS-I-B	gnl\|CDD\|187819
NZ_CP040671.1\|WP_149817833.1\|476832_477405_-\|Uma2-family-endonuclease	unknown	unknown	gnl\|CDD\|368559
NZ_CP040671.1\|WP_149817831.1\|475127_476786_-\|type-I-MYXAN-CRISPR-associated-endonuclease-Cas1	cas1	cd09634_cas1_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|274899
NZ_CP040671.1\|WP_149817814.1\|465412_466501_-\|threonine-synthase	unknown	unknown	gnl\|CDD\|236013
NZ_CP040671.1\|WP_149817823.1\|468850_470368_-\|type-I-MYXAN-CRISPR-associated-Cas8a1/Cmx1	cas8b3	cd09713_cas8b3_CAS-I-B	gnl\|CDD\|132524
NZ_CP040671.1\|WP_149817821.1\|467948_468821_-\|type-I-B-CRISPR-associated-protein-Cas7/Cst2/DevR	cas7	cd09687_cas7_CAS-I-B	gnl\|CDD\|187818
NZ_CP040671.1\|WP_149817816.1\|466616_467231_+\|histidine-phosphatase-family-protein	unknown	unknown	gnl\|CDD\|366010
NZ_CP040671.1\|WP_149817825.1\|470382_472656_-\|CRISPR-associated-helicase-Cas3'	cas3	cd09639_cas3_CAS-I	gnl\|CDD\|224124
NZ_CP040671.1\|WP_149817827.1\|472645_473314_-\|type-I-MYXAN-CRISPR-associated-protein-Cas6/Cmx6	cas6	cd09703_cas6_CAS-I:CAS-III	gnl\|CDD\|370559
NZ_CP040671.1\|WP_149817841.1\|481077_481668_+\|3-isopropylmalate-dehydratase-small-subunit	unknown	unknown	gnl\|CDD\|179314
NZ_CP040671.1\|WP_149817835.1\|477425_478037_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040671.1\|WP_149817843.1\|482707_483670_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|236090
NZ_CP040671.1\|WP_149817812.1\|464801_465416_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040671.1\|WP_149817829.1\|474830_475124_-\|CRISPR-associated-endonuclease-Cas2	cas2	pfam09827_cas2_CAS-I:CAS-II:CAS-III	gnl\|CDD\|378256
NZ_CP040671.1\|WP_149817808.1\|462616_463291_+\|response-regulator	unknown	unknown	gnl\|CDD\|223816
NZ_CP040671.1\|WP_149817837.1\|478049_479822_-\|RDD-family-protein	unknown	unknown	gnl\|CDD\|377640
NZ_CP040671.1\|WP_024125597.1\|485189_485387_-\|DUF1049-domain-containing-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP040671.1\|WP_149817839.1\|480015_481068_+\|adenosine-deaminase	gnl\|CDD\|224729	COG1816, Add, Adenosine deaminase [Nucleotide transport and metabolism].	1.3211e-78
NZ_CP040671.1\|WP_149817810.1\|463295_464690_+\|histidine-kinase	gnl\|CDD\|223715	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms].	3.18972e-50
NZ_CP040671.1\|WP_149817845.1\|483666_485193_-\|right-handed-parallel-beta-helix-repeat-containing-protein	gnl\|CDD\|379079	pfam13229, Beta_helix, Right handed beta helix region. This region contains a parallel beta helix region that shares some similarity with Pectate lyases.	1.35602e-11
NZ_CP040671.1\|WP_149817819.1\|467283_467949_-\|CRISPR-associated-protein-Cas5	gnl\|CDD\|187819	cd09688, Cas5_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas5 is a RAMP superfamily protein; Subunit of the Cascade complex; in subtype I-C this protein might be the endoribonuclease that generates crRNAs; also known as DevS family.	2.53325e-50
NZ_CP040671.1\|WP_149817833.1\|476832_477405_-\|Uma2-family-endonuclease	gnl\|CDD\|368559	pfam05685, Uma2, Putative restriction endonuclease. This family consists of hypothetical proteins that are greatly expanded in cyanobacteria. The proteins are found sporadically in other bacteria. A small number of member proteins also contain pfam02861 domains that are involved in protein interactions. Solutions of several structures for members of this family show that it is likely to be acting as an endonuclease.	2.01017e-44
NZ_CP040671.1\|WP_149817808.1\|462616_463291_+\|response-regulator	gnl\|CDD\|223816	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription].	2.14223e-74
NZ_CP040671.1\|WP_149817814.1\|465412_466501_-\|threonine-synthase	gnl\|CDD\|236013	PRK07409, PRK07409, threonine synthase; Validated.	0
NZ_CP040671.1\|WP_149817823.1\|468850_470368_-\|type-I-MYXAN-CRISPR-associated-Cas8a1/Cmx1	gnl\|CDD\|132524	TIGR03485, hypothetical_protein_L8106_30105, CRISPR-associated protein Cas8a1/Csx13, MYXAN subtype. Members of this family are found among cas (CRISPR-Associated) genes close to CRISPR repeats in Leptospira interrogans (a spirochete), Myxococcus xanthus (a delta-proteobacterium), and Lyngbya sp. PCC 8106 (a cyanobacterium). It is found with other cas genes in Anabaena variabilis ATCC 29413. In Lyngbya sp., the protein is split into two tandem genes. This model corresponds to the N-terminal region or upstream gene; the C-terminal region is described by TIGR03486. CRISPR/cas systems are associated with prokaryotic acquired resistance to phage and other exogenous DNA.	2.66101e-41
NZ_CP040671.1\|WP_149817821.1\|467948_468821_-\|type-I-B-CRISPR-associated-protein-Cas7/Cst2/DevR	gnl\|CDD\|187818	cd09687, Cas7_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas7. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas7 is a RAMP superfamily protein; Subunit of the Cascade complex; also known as Cst2/DevR family.	1.78278e-35
NZ_CP040671.1\|WP_149817816.1\|466616_467231_+\|histidine-phosphatase-family-protein	gnl\|CDD\|366010	pfam00300, His_Phos_1, Histidine phosphatase superfamily (branch 1). The histidine phosphatase superfamily is so named because catalysis centers on a conserved His residue that is transiently phosphorylated during the catalytic cycle. Other conserved residues contribute to a 'phosphate pocket' and interact with the phospho group of substrate before, during and after its transfer to the His residue. Structure and sequence analyses show that different families contribute different additional residues to the 'phosphate pocket' and, more surprisingly, differ in the position, in sequence and in three dimensions, of a catalytically essential acidic residue. The superfamily may be divided into two main branches. The larger branch 1 contains a wide variety of catalytic functions, the best known being fructose 2,6-bisphosphatase (found in a bifunctional protein with 2-phosphofructokinase) and cofactor-dependent phosphoglycerate mutase. The latter is an unusual example of a mutase activity in the superfamily: the vast majority of members appear to be phosphatases. The bacterial regulatory protein phosphatase SixA is also in branch 1 and has a minimal, and possible ancestral-like structure, lacking the large domain insertions that contribute to binding of small molecules in branch 1 members.	2.46564e-45
NZ_CP040671.1\|WP_149817825.1\|470382_472656_-\|CRISPR-associated-helicase-Cas3'	gnl\|CDD\|224124	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms].	9.86276e-40
NZ_CP040671.1\|WP_149817827.1\|472645_473314_-\|type-I-MYXAN-CRISPR-associated-protein-Cas6/Cmx6	gnl\|CDD\|370559	pfam09559, Cas6, Cas6 Crispr. The Cas6 Crispr family of proteins averaging 140 residues are characterized by having a GhGxxxxxGhG motif, where h indicates a hydrophobic residue, at the C-terminus. The CRISPR-Cas system is possibly a mechanism of defense against invading pathogens and plasmids that functions analogously to the RNA interference (RNAi) systems in eukaryotes.	4.66328e-80
NZ_CP040671.1\|WP_149817841.1\|481077_481668_+\|3-isopropylmalate-dehydratase-small-subunit	gnl\|CDD\|179314	PRK01641, leuD, 3-isopropylmalate dehydratase small subunit.	1.76158e-96
NZ_CP040671.1\|WP_149817843.1\|482707_483670_+\|hypothetical-protein	gnl\|CDD\|236090	PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated.	0.00146856
NZ_CP040671.1\|WP_149817829.1\|474830_475124_-\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|378256	pfam09827, CRISPR_Cas2, CRISPR associated protein Cas2. Members of this family of bacterial proteins comprise various hypothetical proteins, as well as CRISPR (clustered regularly interspaced short palindromic repeats) associated proteins, conferring resistance to infection by certain bacteriophages.	7.70424e-21
NZ_CP040671.1\|WP_149817831.1\|475127_476786_-\|type-I-MYXAN-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|274899	TIGR03983, hypothetical_protein_LA3181, CRISPR-associated endonuclease Cas1, subtype MYXAN. Members of this protein are the Cas1 endonuclease, or Cas1 domain in Cas4/Cas1 fusion proteins, of the MYXAN subtype of CRISPR/Cas systems. These systems typically feature repeats and spacers each about 36 base pairs in length. Species with this type of CRISPR system include Myxococcus xanthus, Cyanothece sp., Leptospira interrogans, Sorangium cellulosum, Anabaena variabilis ATCC 29413, etc.	0
NZ_CP040671.1\|WP_149817837.1\|478049_479822_-\|RDD-family-protein	gnl\|CDD\|377640	pfam06271, RDD, RDD family. This family of proteins contain three highly conserved amino acids: one arginine and two aspartates, hence the name of RDD family. This region contains two predicted transmembrane regions. The arginine occurs at the N-terminus of the first helix and the first aspartate occurs in the middle of this helix. The molecular function of this region is unknown. However this region may be involved in transport of an as yet unknown set of ligands (Bateman A pers. obs.).	3.92192e-17

>NZ_CP040671.1|WP_149817827.1|472645_473314_-|type-I-MYXAN-CRISPR-associated-protein-Cas6/Cmx6
MTSHNHFLEIHYSLRGRTLPADHGYALYSAIKKQLQQSGRPDLPSDIPSDLRLSSIAGIPNGEGIIYLNRASRFRLRCPTDQVQTWYRFFQNQVLDIQGHLIRLVQPRITLPEPSGTLAARLVTFKLEAIDHLEVPRYFLESCQKGLTHLGIQGKVFIPSDPNGDLARRTIQVKGKKVVGYRVIVEDLTPEDSLKLQWHGLGGRRHFGCGWFYPVKEEPNAA
>NZ_CP040671.1|WP_149817825.1|470382_472656_-|CRISPR-associated-helicase-Cas3'
MLPSSPPPKLDPDILLAKSSLPSSADWRGTYHLAGHTAAVVKSITTLVDALGTGLLQQFGFSNDTRETLRATARLAAYLHDWGKANHQFQGVVRYPLRASNPSVQPQQNPLQYPQLIRHEVGSVLLAWEFRNWLCQCPNADLMTAIAAAGGHHLKLGGQQGRNTGALGEIREGSGDPYLYWYVHHPSFHKLLRYGVRTLGLPQIIPPFALIKWDIKTIKDKRDKVLNAFIEWEPDLAFLAVVKALLIAADAIGSASAQVSTNIQEWIRSELENTLTEADLQKVIDARRGEYPLRPFQIDLKDKSKRVTLARAGCGTGKTLGAYNWALRHGIGRKLFFCYPTTGTSTEGFLGYVHNQVESELLHSRSAVDLELACTGEEEDNGDGAVNEAAQKLEAFKAWGAKVNVCTVDTVLGLLQCHRRPLYCFPALAKAAFVFDEVHCYDDALFGALLRFLKVVKAPILLMSASFLPAQVAAIQQAVAEEIAIIQGPQTLEDLPRYRFHELAQPDWERVQQELDQGGRVLWVCNQVDTAIAIYQEAKKRGLTPLLYHSRFRYEDRVKHHRAVVEAFQQDQAVLAITTQVAEMSLDLSATLLVTQVADPAGLIQRLGRLNRQYCGHSCDALFYPDENVGFPYKQGDLEAGWALARAFKKQDVSQRQLSDWLKQVNINTKPKEHCIWLDGRWQTYSAPLREAGYTITALLEQDLEKIAPLKSSELPRYTLPLPTKNIKGWQRHKSGYLIAPREQWRYCPELGAVEPK
>NZ_CP040671.1|WP_149817823.1|468850_470368_-|type-I-MYXAN-CRISPR-associated-Cas8a1/Cmx1
MSQFTLSLFDPNFLLPHRAGVAGLALALSELENQRNDAPLAWNITDEAVELTWKDSDQKVVTWLLKQTYQINHQGYLEVPALKLDAQGQYTFTQGVLTTFLQHNTQRKLSNTSVTRTFLIEPDQPEISIEVKPLESCYYTSDIKEAFNNKGAFKKEIPLKGNHLPGLVECFVNGPYQESPQGFLALLFLPLACGYYQLPPQTVGGKLSARSALVIPEVQNLKHWVKRRRAMSGCTYRDFRSSGAGESALHFLLQEKAIEESQQFGVHYCEVYQLGKQVWDAQQAYLKQAVYRVEVMDEVLELYEVARQVFPAHVRQKENGETWLALSKALPWICDNLIGGQPWYAGFFEFYKRNKAYEREGLVKMTEYLNPDERVLFEVVQGAFSVYLSGQFKQAEKQGRQLDYGQVTDKVIYRFQRPSTQQEFATALVDFLSQFRSKAARDKGPQIVHWIHREENWRRARDLVLLAIATYSSKKGDALNGAEVASESMDEVNVTEEEMFSFVDE
>NZ_CP040671.1|WP_149817821.1|467948_468821_-|type-I-B-CRISPR-associated-protein-Cas7/Cst2/DevR
MTKHLFATIVTTTAVAANNRGEGDGSTLSTLQKITRGNDQYTTVSAEAIRWGLREYFQNHYEKEVNRTFNAETDKYSFKDEQFSAEKYIDDDLFGYMDAKKGKDNEDATTKRRGALEISRAMSLDPYWGDIAFGSKGGEKGKTSIHSTEVHCTAYQYTIALTPESLKKPERALLTLDAIGAVRHVGGNHARFLYDFHPESIVLRITDDPSPWIMDVFKRIGESVGCPRLVRLVEVGDVKADELIVGGEIADTPYGQQLKALGVQVYRGVKEAIAHAKEQLKQQLKLEVPA
>NZ_CP040671.1|WP_149817819.1|467283_467949_-|CRISPR-associated-protein-Cas5
MQLYVDCPCTSFPRSFARDFKETYRYPPPSTIYGMLLSLIGEENLDQHRGVKLAIGIIGADPPISRILRKQRHHKFSKNRLGTYSTSKFSKPNHHELLTDVQVVVKVDSSEENAPLKLVDRLAIAFTTPQQISRFGGLSLGESWALVNGVRPYRDNDGSIRWLIKDNRGLISLPIWIDRQSSQGTFQRFRLGNEFEDHCWVRIPQLTVPTPRSRPSAARRS
>NZ_CP040671.1|WP_149817816.1|466616_467231_+|histidine-phosphatase-family-protein
MRLILIRHGEAVGNASGVMLGRQDVPLTERGRQQVLALREKLPLPHAIYTSPLQRCRDTATLMNPCPDLKVQELAELIEIDQGIFTGLTWAQAQAQHPDLCEELEESDYLIPVPEAESMAMAWQRAKQAWKQLRRHRDEDCVWCISHGGFLQCLISVVLGSDRLWGMEIPPAAWFDFSVRVDLDGRFEAENIRWWRINAFNQCS
>NZ_CP040671.1|WP_149817814.1|465412_466501_-|threonine-synthase
MPVTLSAPPIRPAWHGLIHAYGEFLPVSDRTPVVTLYEGNTPLIPVPQIAARIGRNVAVYVKYDGLNPTGSFKDRGMTMAISKAKEAGAEAVICASTGNTSASAAAYARRAGLRAYVLVPEGYVAQGKLAQALLYGAEVIAIEGNFDQALEIVRLMAETYPVTLVNSVNPYRLEGQKTAAFEVVDSLGNAPDWLCIPMGNAGNITAYWMGFCQYREQNRCDRLPRMMGFQAAGSAPLVKGEVVTHPETIATAIRIGNPANWQRAIAVKEASQGAFNAVTDEEILNAYCLLASEEGIFCEPASAASVAGLLKLADQVPSGATVVCVLTGNGLKDPETALKQQSDRFHRHIEPTEQTVAKVMGF
>NZ_CP040671.1|WP_149817812.1|464801_465416_+|hypothetical-protein
MMTLRWQPLVATTVAAILLPLAIAPAAMARPGSPSSSSVEREARSAFRDLAKAQYEGMRAKSMSGVDASLLSLGDRLLASAQQLQQSGNYFQAKETAKAATRIYEAARNLGEARTGQADLSRSYFDAPFQVSRELTRTEAEMAYFRGGNPTVRDLFSRAQQLAQPASLTAAAPTTANVASLATNRAAVQLLKASRHLMRAERGF
>NZ_CP040671.1|WP_149817810.1|463295_464690_+|histidine-kinase
MLKGLCLKVQGWQRLPPTQRGIVIIALPVCCLLSTVGVLIWLSASIADYEGWVRHTQRVQLEGRELLNHLIDAETGVRGYHLTRQVGFLEPYYTAAAQLPLTLENLEVLISDNPHQLEHFRHFKSLVEETFHLLAQQLEDAPNLSLAETEQRLYFYQQLEQAKQAMDRSRVAINAFMSEEDRLLADRQQHLEALRQINTVVLLLAVVVGLGSSGLAIHWFRQLYQEVDLRGQRLEAACDRLARFTANASHQLRAPIAAILSHAQVGLLLARQAPEQSLPRLEKVATLAKAMGQLVNDLLFLARYEGVSPPDFATSFDLVPFIEQVVQEWQETGTASHHFYLEVPSVPMFIQGDREMLKQVILNLLTNADRYTPKGGTITLRLEPQGSSAVIHVSDTGMGISEAALPHIFDYFYRDERVRQQGISGSGLGLAIVRQIVHLHRGSITVHSQENQGSTFTVRLPLAP
>NZ_CP040671.1|WP_149817808.1|462616_463291_+|response-regulator
MRILLVEDDPEQLEPLSTALSHVGHLVDGVQEGETAQWLMQEKTYDLLILDWMLPKVSGLELCSQYRQQGKSTPILLLTAKDTTADKVMGLDAGADDYLIKPVDVMELLARVRALGRRSPQWLGDQLYLQDLVLDLPSMTLQRGDRTIVLSTREYQFLEFFLRHPGQVISREQLELNLWEWDNQPESNAVSTQIRRLRLRLGELGCADWLETIYGMGYRLQASS
>NZ_CP040671.1|WP_149817829.1|474830_475124_-|CRISPR-associated-endonuclease-Cas2
MGESKNWYLICYDIRDPKRWRQAYKQLEGYGERLQFSIFRCRLTPREREKLRWQLEKILTKEDSLLIVGLCSQCVERVCACNRAGTWPMSEQNFKIF
>NZ_CP040671.1|WP_149817831.1|475127_476786_-|type-I-MYXAN-CRISPR-associated-endonuclease-Cas1
MEQTVACAETETLRVNSLHAFAYCQRLFYLEEVEELYTQNESVFAGRRLHAELQKLEREDWQEFNLESVALGLRGRVDALRTLEGHLIPYEHKIGRCYRDRQQQPQAWHSDRVQILAYACLLETVLGVTVPEGRIHYHRDNVTVRVPVDEAGRQLVRDTIEQARQLRASLERPPVCSNERLCLNCSLAPVCLPEEARLARDPEHLPLRLFPRDDEREIIHVTAGKAVIRRAGEQLRIAIDDEPEQKLPIQQVGQVVIHKFAQITTPAIHLCAYEDVGVHFISSGGRYIGSIDNRKGSIQRRIRQYQALTNPDQCLRLAQLLVNCRGQSQRRLLLRGQRNRQDALPALQETTTQMDRLISSISHANSLEALRGIEGNLGALYFSALPYLLGDHVPKELHFNGRNRRPPKDRFNALLSFGYGMLLKDVMNAILTVGLEPAFGFYHQPRTQAPPLALDLMEIFRVPLVDMVVIGSINRMQWNFDECFEVHRDHVWLSDYGRRKFIELYEARKGETWKHPVTNYSLTYRRILELEVRLLEKEWCGEAGLFGKLILR
>NZ_CP040671.1|WP_149817833.1|476832_477405_-|Uma2-family-endonuclease
MHHAPPVYLPKTLQFTEEQFAEIIKANPNLRFELTAAGELVVMPPTGGETGRYNAALTADISLWNRQTQLGEVFDSSTGFRLPNGAIRSPDVAWITKEHWQRLTPEERQGFVPLCPDFVIELASASDDLSHLRAKMQEYMDNGCRLGWLIVPQQQMAEIYRPQQTPESVSLPTTLSGEEILPDFCLAFSP
>NZ_CP040671.1|WP_149817835.1|477425_478037_-|hypothetical-protein
MRLLLTLGCSLTLLGAFPLLMGRASEPTIQAAAPVPQRYQLLGLSFETPLQFSPPTSFGENGVAVVYPANAVPGEHELMVSLISLPKTSEVLGGLSDQELRSWLRFTQVGGPLSAAPARIERRILGRRVRGEMFYYPTPRPIHQELYLMHLQGGQRLAILFEAEDQVPLPVMEQVFNHVAASLQELPPRSREWKRSFEWWKNR
>NZ_CP040671.1|WP_149817837.1|478049_479822_-|RDD-family-protein
MGWVSRMWPFRRRGRLPSALSSGNVVTIALELYRHQGNRYFLLSLFAHAWFFLLTIAAVLIVAVALIVGGILAGAMDNVAPFLWLTGISILVALPLYLFGWTRLMASGALLSRRIYAVLTALEESESAARSFIFPKMLNYLLATLMVGVILLLVYGVLGAIGYLIYLVASPLVQFLEQNIQTEPARSLFFLTFLLSILLLVLLALLVISYFMARLSLVDVVLALEPDCTPLKSVRRSWQLTQGQAWHTLTVFFVASLATIPANLLGSIINSVVIIPVAGLFVGVLLLPLWQGIKAVLYWDLRVRNEGAAFQVRPEAVNPLRWLRRVTLRTPESIELDFALGGIGSRVLAWLIDQVILYTALVLFSLAAGYIYFYALYPWLIEVLPASGQSIEAWSLGIYLLVMFALYNGYYIFFETYWQGQTPGKCFAEIRVVQDNGLPIGLKEATLRSLLQPIDFAFFGIGALLVALSRSEKRLGDMVAGTLVIQDEQATRLAPKATTLQQPQGAWVQELRSLAHWERMTPEQYLLVRNYLNNRDRLSPVGRYQAAQELRQQLEPLLLPTYPAHWPTLSAEDFLEGLYTAYRQQYQSSP
>NZ_CP040671.1|WP_149817839.1|480015_481068_+|adenosine-deaminase
MALYAELHRHLGGSVVPRILWRYFQRNDRALADRFPDYEEFETFYTRPRQSLEEYLELHTLVESVQTPQTLPYFIFRLIRGAYIFENLAYLELRYTPYLRTDPQRSQSDRIEQMADIVKTVGLACQVPEYPIVTSQILCMHTRLPYAVNRAIVDLAASFPQFVCGIDLAGGDSVYGDRMAEFIELYAYARDRGLKTTGHLYETVNGCYPELLPYLQRIGHGIQIPLRYPELLKEVAAAGQCLEVCPTTYFQTGTLESYAQLRLVFERCFEAGVDVAICTDNAGLHNVRLPFEYENLLTHDILNFKELQACQEAAFRHAFAWPHAQPPTLLLSNLLQGNSPQNALAGCAIQ
>NZ_CP040671.1|WP_149817841.1|481077_481668_+|3-isopropylmalate-dehydratase-small-subunit
MSKIERITGRGLPLRGNDIDTDRIIPARFLRCVTFDGLGEHVFADDRQSGQHPFDLPQYQGARILVVNANFGCGSSREHAPQAIGRWGIQAIVSESFAEIFAGNCLAMGVPCLTAAPEQVQALQTLLEDQPTTELTLDLQALTLTAGDQVIPLTMAESTRQMLLSGQWDACGQLLANQDKIHDVAARLPYVRWAVS
>NZ_CP040671.1|WP_149817843.1|482707_483670_+|hypothetical-protein
MTSATVDRQRLQTALASLNLSLEAELTQYRCHRMVQAHSPFEAPPVPESATSPEPSVTPAAAEPISQTVPPVASSLALTPETAPATDERANGGLADPFFEFDPTDLAELLPPSYPSDPPAPQTPNPTKRPFASTRELLKQARKNQQRPWFQRRESNSHHLVQRWLIVVGILAGFSGAALWWFNRRPAPVATESPATPTAASPTPPVGPDMTAREFPDVNRSTLAQLEPAASPSTSASPTPTASPTPAEPEHTTQLFVEKMPNGRYYVLAPYKEPADLEKVQAVVPDAFLVGNGDQTKIQLGMFVDEASAQAMVNQLRDRL
>NZ_CP040671.1|WP_149817845.1|483666_485193_-|right-handed-parallel-beta-helix-repeat-containing-protein
MKGPHALLIVLVIVLCLMRQPRIAAIPASPLTLEVNPANPQASDAVTPFRTIAAALAWAQAHDRPTDIYIHGGIYREALGTIHQRQTPLRLVAQAGERVILRGSQRWSDWQEVSSTPRFTIYRHPWTLSWGFSGNPWTNYGIELPLVAQRGELVWWRDTPLRQRLSFRELQGNDFYVDDTEQQLYVALSVGISPSELEVAVHREALRILDSGFISLVGLRFEHYGGTFTQAVRIERSHDIEVKDCTFWGNNWGGLESHQSDRLRVERTQFLQNGWRGMAGVHLRDFTVQQVLVQGNNWRGAWAGFYDWDAGDKYFHLRRAVFDRHRAIENQAAGLWLDTDNQNVEIRRSQFLGNAVVGLFLEASTGPVTIEDSLIAYNYSIAPNYLQTPGIFGWAAAHVTLRHNWIWENQGAQIGVRDPSPRTVTLPETGEEVTMTSQDWYLEGNWIGSRQEQLLTTLKGEPFLQTLKLQDNHWWSEAAYPFRLEGENLTWSQWQEQYGNASDRWLIP
>NZ_CP040671.1|WP_024125597.1|485189_485387_-|DUF1049-domain-containing-protein
MRRFLLFLLWMISSGAIALFSVQNAKAVSLKFLFWQSIEMPLGLLLIFVAAIALWVPYLARPLRR

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Crispr_ID: NZ_CP040671_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP040671_2

541829-545511

Orphan

Consensus_repeat	Method
GTGCTGGGATTCTTTCCCAGCCGAACTAATGGAAAC	PILER-CR
GTGCTGGGATTCTTTCCCAGCCGAACTAATGGAAAC	CRISPRCasFinder
GTGCTGGGATTCTTTCCCAGCCGAACTAATGGAAAC	CRT

51 spacers

The CRISPR arrays of NZ_CP040671_2

>merge|NZ_CP040671|2|541829-545511|PILER-CR,CRISPRCasFinder,CRT
GTGCTGGGATTCTTTCCCAGCCGAACTAATGGAAATGATTTACCATAGAAAAACCATGCAGGTGTGCGACGTGCTGGGATTCTTTCCCAGCCGAACTAATGGAAACCCTCTACCTCTGCCTCTACTGCCTCTGCCTCTACCGTGCTGGGATTCTTTCCCAGCCGAACTAATGGAAACGTCGCGAACTTTGCTATCAGTATGGCTGCCTTCTAGTGCTGGGATTCTTTCCCAGCCGAACTAATGGAAACGATTAGGGTAATAATAAAATATTGGGCGTAAATTAAGGTGCTGGGATTCTTTCCCAGCCGAACTAATGGAAACACCTAGCATAACGTTAAACTCCTAAACTCCAGTGTGCTGGGATTCTTTCCCAGCCGAACTAATGGAAACTGCGTGGGAAAAGCGATTTTTTCTTCCTGCGCGGAAGTGCTGGGATTCTTTCCCAGCCGAACTAATGGAAACGGTTGGGAAGGCAATTTTTTCTTCGCTTGCGGCGTGCTGGGATTCTTTCCCAGCCGAACTAATGGAAACGGGAGAATGCCGAAGTGGAGCATTTGGGTTACCGCTAGTGCTGGGATTCTTTCCCAGCCGAACTAATGGAAACATCTGCGGGGGTAACGTGGGTCTGTTTAGCCGAAATGTGCTGGGATTCTTTCCCAGCCGAACTAATGGAAACTCTTTTGCATCCTCTGAAGATTCAATCTGAGGATGTGCTGGGATTCTTTCCCAGCCGAACTAATGGAAACGCGCTGTAGCTGCTTTAGTTTTGTTTGCGGGTTTTGCCGTGCTGGGATTCTTTCCCAGCCGAACTAATGGAAACCCCCTAGAAGGCTCAGGAAGGTGGGTCAAAATCGTTTCAAGTGCTGGGATTCTTTCCCAGCCGAACTAATGGAAACTCGTTTAGTACTGGAACTGTTCTAAACAACGCCAAGTGCTGGGATTCTTTCCCAGCCGAACTAATGGAAACGCTAAACTCGATGGGAGTATAGAATACCTGATATTGTGCTGGGATTCTTTCCCAGCCGAACTAATGGAAACCTTAGAAGAGCTAGAAAACTGTTTGAGAATGCCCAAGTGCTGGGATTCTTTCCCAGCCGAACTAATGGAAACCAGCGGGGACGGGCAAGGACGGCAAAGGCGGAGCGGTGCTGGGATTCTTTCCCAGCCGAACTAATGGAAACCTTCAATTGCTTTTAGATTTTCATTCAGATAAATGTGCTGGGATTCTTTCCCAGCCGAACTAATGGAAACTAATAAAACTCTAAATTAAGGTTGATTGTATCTCCGTGCTGGGATTCTTTCCCAGCCGAACTAATGGAAACTTCGATAAGCCAAGACTGCTTAACCCCAGTCTTAAGGGAGTGCTGGGATTCTTTCCCAGCCGAACTAATGGAAACTACTAAACTCTGCAAGTAACAAATTAGCAAGAGTGCTGGGATTCTTTCCCAGCCGAACTAATGGAAACAAACCCCCTTAAAAACATCATTGTTTTTCTTGCTTTGTGCTGGGATTCTTTCCCAGCCGAACTAATGGAAACGTCTTAAAATCTGCCACAAGATTATAAACGCCATAAGTGCTGGGATTCTTTCCCAGCCGAACTAATGGAAACGAGCCGCGTTTAGTTCATCAAAAAAGATTAAGCAAGGGTGCTGGGATTCTTTCCCAGCCGAACTAATGGAAACTCTTTCTTGGAAATTATTAAAGGCACACAAAAAACAGTGCTGGGATTCTTTCCCAGCCGAACTAATGGAAACTTTTGGCTTCATCGAAGCCGAAGTCTCTTGCAAGTGCTGGGATTCTTTCCCAGCCGAACTAATGGAAACACAAGGCGCGAAACAACGTTTCTTCAACCCCCTGTGCTGGGATTCTTTCCCAGCCGAACTAATGGAAACCAGGCAATTGCTCAACTGGTGGTTCAAATTGCATTTATTGTGCTGGGATTCTTTCCCAGCCGAACTAATGGAAACAGCCTATCGCCAATCCTTTTTGCGCGAGCCAATCGGTGCTGGGATTCTTTCCCAGCCGAACTAATGGAAACGCTAATTCAATAGGGGGCAATGAGCGAGGAATCGTGCTGGGATTCTTTCCCAGCCGAACTAATGGAAACTAAAAGGCCTGAGATAACTCAGTCCCCTATCCAGACGTGCTGGGATTCTTTCCCAGCCGAACTAATGGAAACTATTGGTTACTGCCATTAATTTATCTAGCATAATGTGCTGGGATTCTTTCCCAGCCGAACTAATGGAAACTTCTCTTGATTCAAGTCGTTTGTTACCCTATGTATCAGTGCTGGGATTCTTTCCCAGCCGAACTAATGGAAACTTAAAGGAAAATTTGGAATAGACAACCTGACGGAAGTGTGCTGGGATTCTTTCCCAGCCGAACTAATGGAAACATCTGTCTTAAATCGAAATGAAGGAGGTAGATTGTGCTGGGATTCTTTCCCAGCCGAACTAATGGAAACTTCTCTTGATTCAAGTCGTTTGTTACCCTATGTATCAGTGCTGGGATTCTTTCCCAGCCGAACTAATGGAAACTTAAAGGAAAATTTGGAATAGACAACCTGACGGAAGTGTGCTGGGATTCTTTCCCAGCCGAACTAATGGAAACATCTGTCTTAAATCGAAATGAAGGAGGTAGATTGTGCTGGGATTCTTTCCCAGCCGAACTAATGGAAACAATTTGAACCTGAAATAATTCCAAAAGTAGCCGCTTCGTGCTGGGATTCTTTCCCAGCCGAACTAATGGAAACTTCCCTTCTCAAGGAACGTGTAAATTTCTGAGTGGGTGCTGGGATTCTTTCCCAGCCGAACTAATGGAAACATCTGTCTTAAATCGAAATGAAGGAGGTAGATTGTGCTGGGATTCTTTCCCAGCCGAACTAATGGAAACAGATGCCTGCGTTCTGTCTGTTACTCGTGCAATTGGTGCTGGGATTCTTTCCCAGCCGAACTAATGGAAACTCTAGAGACACTAAAGATGTTGCAGAAGAAATTAGTGCTGGGATTCTTTCCCAGCCGAACTAATGGAAACGCTTCTGTAGGATCGTTAGGTAATTTAGGTAAATTTGTGCTGGGATTCTTTCCCAGCCGAACTAATGGAAACTGGGGAAAGCAATTTTTTCCTCTTGCGCTGAGGTTGTGCTGGGATTCTTTCCCAGCCGAACTAATGGAAACCTGAAGGCAATTTAGATATTAAAGGCAAGCCAACTAGTGCTGGGATTCTTTCCCAGCCGAACTAATGGAAACCGACCAGTAAGCGCAAGACCTTTTGGTAGCTTCATGTGCTGGGATTCTTTCCCAGCCGAACTAATGGAAACACAGAGAAGGAAGCACCGCTAGGTTATGCTCATCCAAGTGCTGGGATTCTTTCCCAGCCGAACTAATGGAAACAAGCGTTAGTAGCACCTATTGAATAAGCTAGAAAGAGTGCTGGGATTCTTTCCCAGCCGAACTAATGGAAACTCTCCTGAATGGGATTACATAACTTCTCTACAGTCAAGTGCTGGGATTCTTTCCCAGCCGAACTAATGGAAACATCTCCTTCTGCAGTAGAAGGAGATCCGAATTAGGGCACGTGCTGGGATTCTTTCCCAGCCGAACTAATGGAAACAGCCAAATAATTGACTCCTGTAGGGACTTCGGGAGGTGCTGGGATTCTTTCCCAGCCGAACTAATGGAAAC

>NZ_CP040671|2|2|541829-545511|PILER-CR
GTGCTGGGATTCTTTCCCAGCCGAACTAATGGAAAT	GATTTACCATAGAAAAACCATGCAGGTGTGCGAC
GTGCTGGGATTCTTTCCCAGCCGAACTAATGGAAAC	CCTCTACCTCTGCCTCTACTGCCTCTGCCTCTACC
GTGCTGGGATTCTTTCCCAGCCGAACTAATGGAAAC	GTCGCGAACTTTGCTATCAGTATGGCTGCCTTCTA
GTGCTGGGATTCTTTCCCAGCCGAACTAATGGAAAC	GATTAGGGTAATAATAAAATATTGGGCGTAAATTAAG
GTGCTGGGATTCTTTCCCAGCCGAACTAATGGAAAC	ACCTAGCATAACGTTAAACTCCTAAACTCCAGT
GTGCTGGGATTCTTTCCCAGCCGAACTAATGGAAAC	TGCGTGGGAAAAGCGATTTTTTCTTCCTGCGCGGAA
GTGCTGGGATTCTTTCCCAGCCGAACTAATGGAAAC	GGTTGGGAAGGCAATTTTTTCTTCGCTTGCGGC
GTGCTGGGATTCTTTCCCAGCCGAACTAATGGAAAC	GGGAGAATGCCGAAGTGGAGCATTTGGGTTACCGCTA
GTGCTGGGATTCTTTCCCAGCCGAACTAATGGAAAC	ATCTGCGGGGGTAACGTGGGTCTGTTTAGCCGAAAT
GTGCTGGGATTCTTTCCCAGCCGAACTAATGGAAAC	TCTTTTGCATCCTCTGAAGATTCAATCTGAGGAT
GTGCTGGGATTCTTTCCCAGCCGAACTAATGGAAAC	GCGCTGTAGCTGCTTTAGTTTTGTTTGCGGGTTTTGCC
GTGCTGGGATTCTTTCCCAGCCGAACTAATGGAAAC	CCCCTAGAAGGCTCAGGAAGGTGGGTCAAAATCGTTTCAA
GTGCTGGGATTCTTTCCCAGCCGAACTAATGGAAAC	TCGTTTAGTACTGGAACTGTTCTAAACAACGCCAA
GTGCTGGGATTCTTTCCCAGCCGAACTAATGGAAAC	GCTAAACTCGATGGGAGTATAGAATACCTGATATT
GTGCTGGGATTCTTTCCCAGCCGAACTAATGGAAAC	CTTAGAAGAGCTAGAAAACTGTTTGAGAATGCCCAA
GTGCTGGGATTCTTTCCCAGCCGAACTAATGGAAAC	CAGCGGGGACGGGCAAGGACGGCAAAGGCGGAGCG
GTGCTGGGATTCTTTCCCAGCCGAACTAATGGAAAC	CTTCAATTGCTTTTAGATTTTCATTCAGATAAAT
GTGCTGGGATTCTTTCCCAGCCGAACTAATGGAAAC	TAATAAAACTCTAAATTAAGGTTGATTGTATCTCC
GTGCTGGGATTCTTTCCCAGCCGAACTAATGGAAAC	TTCGATAAGCCAAGACTGCTTAACCCCAGTCTTAAGGGA
GTGCTGGGATTCTTTCCCAGCCGAACTAATGGAAAC	TACTAAACTCTGCAAGTAACAAATTAGCAAGA
GTGCTGGGATTCTTTCCCAGCCGAACTAATGGAAAC	AAACCCCCTTAAAAACATCATTGTTTTTCTTGCTTT
GTGCTGGGATTCTTTCCCAGCCGAACTAATGGAAAC	GTCTTAAAATCTGCCACAAGATTATAAACGCCATAA
GTGCTGGGATTCTTTCCCAGCCGAACTAATGGAAAC	GAGCCGCGTTTAGTTCATCAAAAAAGATTAAGCAAGG
GTGCTGGGATTCTTTCCCAGCCGAACTAATGGAAAC	TCTTTCTTGGAAATTATTAAAGGCACACAAAAAACA
GTGCTGGGATTCTTTCCCAGCCGAACTAATGGAAAC	TTTTGGCTTCATCGAAGCCGAAGTCTCTTGCAA
GTGCTGGGATTCTTTCCCAGCCGAACTAATGGAAAC	ACAAGGCGCGAAACAACGTTTCTTCAACCCCCT
GTGCTGGGATTCTTTCCCAGCCGAACTAATGGAAAC	CAGGCAATTGCTCAACTGGTGGTTCAAATTGCATTTATT
GTGCTGGGATTCTTTCCCAGCCGAACTAATGGAAAC	AGCCTATCGCCAATCCTTTTTGCGCGAGCCAATCG
GTGCTGGGATTCTTTCCCAGCCGAACTAATGGAAAC	GCTAATTCAATAGGGGGCAATGAGCGAGGAATC
GTGCTGGGATTCTTTCCCAGCCGAACTAATGGAAAC	TAAAAGGCCTGAGATAACTCAGTCCCCTATCCAGAC
GTGCTGGGATTCTTTCCCAGCCGAACTAATGGAAAC	TATTGGTTACTGCCATTAATTTATCTAGCATAAT
GTGCTGGGATTCTTTCCCAGCCGAACTAATGGAAAC	TTCTCTTGATTCAAGTCGTTTGTTACCCTATGTATCA
GTGCTGGGATTCTTTCCCAGCCGAACTAATGGAAAC	TTAAAGGAAAATTTGGAATAGACAACCTGACGGAAGT
GTGCTGGGATTCTTTCCCAGCCGAACTAATGGAAAC	ATCTGTCTTAAATCGAAATGAAGGAGGTAGATT
GTGCTGGGATTCTTTCCCAGCCGAACTAATGGAAAC	TTCTCTTGATTCAAGTCGTTTGTTACCCTATGTATCA
GTGCTGGGATTCTTTCCCAGCCGAACTAATGGAAAC	TTAAAGGAAAATTTGGAATAGACAACCTGACGGAAGT
GTGCTGGGATTCTTTCCCAGCCGAACTAATGGAAAC	ATCTGTCTTAAATCGAAATGAAGGAGGTAGATT
GTGCTGGGATTCTTTCCCAGCCGAACTAATGGAAAC	AATTTGAACCTGAAATAATTCCAAAAGTAGCCGCTTC
GTGCTGGGATTCTTTCCCAGCCGAACTAATGGAAAC	TTCCCTTCTCAAGGAACGTGTAAATTTCTGAGTGG
GTGCTGGGATTCTTTCCCAGCCGAACTAATGGAAAC	ATCTGTCTTAAATCGAAATGAAGGAGGTAGATT
GTGCTGGGATTCTTTCCCAGCCGAACTAATGGAAAC	AGATGCCTGCGTTCTGTCTGTTACTCGTGCAATTG
GTGCTGGGATTCTTTCCCAGCCGAACTAATGGAAAC	TCTAGAGACACTAAAGATGTTGCAGAAGAAATTA
GTGCTGGGATTCTTTCCCAGCCGAACTAATGGAAAC	GCTTCTGTAGGATCGTTAGGTAATTTAGGTAAATTT
GTGCTGGGATTCTTTCCCAGCCGAACTAATGGAAAC	TGGGGAAAGCAATTTTTTCCTCTTGCGCTGAGGTT
GTGCTGGGATTCTTTCCCAGCCGAACTAATGGAAAC	CTGAAGGCAATTTAGATATTAAAGGCAAGCCAACTA
GTGCTGGGATTCTTTCCCAGCCGAACTAATGGAAAC	CGACCAGTAAGCGCAAGACCTTTTGGTAGCTTCAT
GTGCTGGGATTCTTTCCCAGCCGAACTAATGGAAAC	ACAGAGAAGGAAGCACCGCTAGGTTATGCTCATCCAA
GTGCTGGGATTCTTTCCCAGCCGAACTAATGGAAAC	AAGCGTTAGTAGCACCTATTGAATAAGCTAGAAAGA
GTGCTGGGATTCTTTCCCAGCCGAACTAATGGAAAC	TCTCCTGAATGGGATTACATAACTTCTCTACAGTCAA
GTGCTGGGATTCTTTCCCAGCCGAACTAATGGAAAC	ATCTCCTTCTGCAGTAGAAGGAGATCCGAATTAGGGCAC
GTGCTGGGATTCTTTCCCAGCCGAACTAATGGAAAC	AGCCAAATAATTGACTCCTGTAGGGACTTCGGGAG
GTGCTGGGATTCTTTCCCAGCCGAACTAATGGAAAC

>NZ_CP040671|2|2|541829-545511|CRISPRCasFinder
GTGCTGGGATTCTTTCCCAGCCGAACTAATGGAAAT	GATTTACCATAGAAAAACCATGCAGGTGTGCGAC
GTGCTGGGATTCTTTCCCAGCCGAACTAATGGAAAC	CCTCTACCTCTGCCTCTACTGCCTCTGCCTCTACC
GTGCTGGGATTCTTTCCCAGCCGAACTAATGGAAAC	GTCGCGAACTTTGCTATCAGTATGGCTGCCTTCTA
GTGCTGGGATTCTTTCCCAGCCGAACTAATGGAAAC	GATTAGGGTAATAATAAAATATTGGGCGTAAATTAAG
GTGCTGGGATTCTTTCCCAGCCGAACTAATGGAAAC	ACCTAGCATAACGTTAAACTCCTAAACTCCAGT
GTGCTGGGATTCTTTCCCAGCCGAACTAATGGAAAC	TGCGTGGGAAAAGCGATTTTTTCTTCCTGCGCGGAA
GTGCTGGGATTCTTTCCCAGCCGAACTAATGGAAAC	GGTTGGGAAGGCAATTTTTTCTTCGCTTGCGGC
GTGCTGGGATTCTTTCCCAGCCGAACTAATGGAAAC	GGGAGAATGCCGAAGTGGAGCATTTGGGTTACCGCTA
GTGCTGGGATTCTTTCCCAGCCGAACTAATGGAAAC	ATCTGCGGGGGTAACGTGGGTCTGTTTAGCCGAAAT
GTGCTGGGATTCTTTCCCAGCCGAACTAATGGAAAC	TCTTTTGCATCCTCTGAAGATTCAATCTGAGGAT
GTGCTGGGATTCTTTCCCAGCCGAACTAATGGAAAC	GCGCTGTAGCTGCTTTAGTTTTGTTTGCGGGTTTTGCC
GTGCTGGGATTCTTTCCCAGCCGAACTAATGGAAAC	CCCCTAGAAGGCTCAGGAAGGTGGGTCAAAATCGTTTCAA
GTGCTGGGATTCTTTCCCAGCCGAACTAATGGAAAC	TCGTTTAGTACTGGAACTGTTCTAAACAACGCCAA
GTGCTGGGATTCTTTCCCAGCCGAACTAATGGAAAC	GCTAAACTCGATGGGAGTATAGAATACCTGATATT
GTGCTGGGATTCTTTCCCAGCCGAACTAATGGAAAC	CTTAGAAGAGCTAGAAAACTGTTTGAGAATGCCCAA
GTGCTGGGATTCTTTCCCAGCCGAACTAATGGAAAC	CAGCGGGGACGGGCAAGGACGGCAAAGGCGGAGCG
GTGCTGGGATTCTTTCCCAGCCGAACTAATGGAAAC	CTTCAATTGCTTTTAGATTTTCATTCAGATAAAT
GTGCTGGGATTCTTTCCCAGCCGAACTAATGGAAAC	TAATAAAACTCTAAATTAAGGTTGATTGTATCTCC
GTGCTGGGATTCTTTCCCAGCCGAACTAATGGAAAC	TTCGATAAGCCAAGACTGCTTAACCCCAGTCTTAAGGGA
GTGCTGGGATTCTTTCCCAGCCGAACTAATGGAAAC	TACTAAACTCTGCAAGTAACAAATTAGCAAGA
GTGCTGGGATTCTTTCCCAGCCGAACTAATGGAAAC	AAACCCCCTTAAAAACATCATTGTTTTTCTTGCTTT
GTGCTGGGATTCTTTCCCAGCCGAACTAATGGAAAC	GTCTTAAAATCTGCCACAAGATTATAAACGCCATAA
GTGCTGGGATTCTTTCCCAGCCGAACTAATGGAAAC	GAGCCGCGTTTAGTTCATCAAAAAAGATTAAGCAAGG
GTGCTGGGATTCTTTCCCAGCCGAACTAATGGAAAC	TCTTTCTTGGAAATTATTAAAGGCACACAAAAAACA
GTGCTGGGATTCTTTCCCAGCCGAACTAATGGAAAC	TTTTGGCTTCATCGAAGCCGAAGTCTCTTGCAA
GTGCTGGGATTCTTTCCCAGCCGAACTAATGGAAAC	ACAAGGCGCGAAACAACGTTTCTTCAACCCCCT
GTGCTGGGATTCTTTCCCAGCCGAACTAATGGAAAC	CAGGCAATTGCTCAACTGGTGGTTCAAATTGCATTTATT
GTGCTGGGATTCTTTCCCAGCCGAACTAATGGAAAC	AGCCTATCGCCAATCCTTTTTGCGCGAGCCAATCG
GTGCTGGGATTCTTTCCCAGCCGAACTAATGGAAAC	GCTAATTCAATAGGGGGCAATGAGCGAGGAATC
GTGCTGGGATTCTTTCCCAGCCGAACTAATGGAAAC	TAAAAGGCCTGAGATAACTCAGTCCCCTATCCAGAC
GTGCTGGGATTCTTTCCCAGCCGAACTAATGGAAAC	TATTGGTTACTGCCATTAATTTATCTAGCATAAT
GTGCTGGGATTCTTTCCCAGCCGAACTAATGGAAAC	TTCTCTTGATTCAAGTCGTTTGTTACCCTATGTATCA
GTGCTGGGATTCTTTCCCAGCCGAACTAATGGAAAC	TTAAAGGAAAATTTGGAATAGACAACCTGACGGAAGT
GTGCTGGGATTCTTTCCCAGCCGAACTAATGGAAAC	ATCTGTCTTAAATCGAAATGAAGGAGGTAGATT
GTGCTGGGATTCTTTCCCAGCCGAACTAATGGAAAC	TTCTCTTGATTCAAGTCGTTTGTTACCCTATGTATCA
GTGCTGGGATTCTTTCCCAGCCGAACTAATGGAAAC	TTAAAGGAAAATTTGGAATAGACAACCTGACGGAAGT
GTGCTGGGATTCTTTCCCAGCCGAACTAATGGAAAC	ATCTGTCTTAAATCGAAATGAAGGAGGTAGATT
GTGCTGGGATTCTTTCCCAGCCGAACTAATGGAAAC	AATTTGAACCTGAAATAATTCCAAAAGTAGCCGCTTC
GTGCTGGGATTCTTTCCCAGCCGAACTAATGGAAAC	TTCCCTTCTCAAGGAACGTGTAAATTTCTGAGTGG
GTGCTGGGATTCTTTCCCAGCCGAACTAATGGAAAC	ATCTGTCTTAAATCGAAATGAAGGAGGTAGATT
GTGCTGGGATTCTTTCCCAGCCGAACTAATGGAAAC	AGATGCCTGCGTTCTGTCTGTTACTCGTGCAATTG
GTGCTGGGATTCTTTCCCAGCCGAACTAATGGAAAC	TCTAGAGACACTAAAGATGTTGCAGAAGAAATTA
GTGCTGGGATTCTTTCCCAGCCGAACTAATGGAAAC	GCTTCTGTAGGATCGTTAGGTAATTTAGGTAAATTT
GTGCTGGGATTCTTTCCCAGCCGAACTAATGGAAAC	TGGGGAAAGCAATTTTTTCCTCTTGCGCTGAGGTT
GTGCTGGGATTCTTTCCCAGCCGAACTAATGGAAAC	CTGAAGGCAATTTAGATATTAAAGGCAAGCCAACTA
GTGCTGGGATTCTTTCCCAGCCGAACTAATGGAAAC	CGACCAGTAAGCGCAAGACCTTTTGGTAGCTTCAT
GTGCTGGGATTCTTTCCCAGCCGAACTAATGGAAAC	ACAGAGAAGGAAGCACCGCTAGGTTATGCTCATCCAA
GTGCTGGGATTCTTTCCCAGCCGAACTAATGGAAAC	AAGCGTTAGTAGCACCTATTGAATAAGCTAGAAAGA
GTGCTGGGATTCTTTCCCAGCCGAACTAATGGAAAC	TCTCCTGAATGGGATTACATAACTTCTCTACAGTCAA
GTGCTGGGATTCTTTCCCAGCCGAACTAATGGAAAC	ATCTCCTTCTGCAGTAGAAGGAGATCCGAATTAGGGCAC
GTGCTGGGATTCTTTCCCAGCCGAACTAATGGAAAC	AGCCAAATAATTGACTCCTGTAGGGACTTCGGGAG
GTGCTGGGATTCTTTCCCAGCCGAACTAATGGAAAC

>NZ_CP040671|2|2|541829-545511|CRT
GTGCTGGGATTCTTTCCCAGCCGAACTAATGGAAAT	GATTTACCATAGAAAAACCATGCAGGTGTGCGAC
GTGCTGGGATTCTTTCCCAGCCGAACTAATGGAAAC	CCTCTACCTCTGCCTCTACTGCCTCTGCCTCTACC
GTGCTGGGATTCTTTCCCAGCCGAACTAATGGAAAC	GTCGCGAACTTTGCTATCAGTATGGCTGCCTTCTA
GTGCTGGGATTCTTTCCCAGCCGAACTAATGGAAAC	GATTAGGGTAATAATAAAATATTGGGCGTAAATTAAG
GTGCTGGGATTCTTTCCCAGCCGAACTAATGGAAAC	ACCTAGCATAACGTTAAACTCCTAAACTCCAGT
GTGCTGGGATTCTTTCCCAGCCGAACTAATGGAAAC	TGCGTGGGAAAAGCGATTTTTTCTTCCTGCGCGGAA
GTGCTGGGATTCTTTCCCAGCCGAACTAATGGAAAC	GGTTGGGAAGGCAATTTTTTCTTCGCTTGCGGC
GTGCTGGGATTCTTTCCCAGCCGAACTAATGGAAAC	GGGAGAATGCCGAAGTGGAGCATTTGGGTTACCGCTA
GTGCTGGGATTCTTTCCCAGCCGAACTAATGGAAAC	ATCTGCGGGGGTAACGTGGGTCTGTTTAGCCGAAAT
GTGCTGGGATTCTTTCCCAGCCGAACTAATGGAAAC	TCTTTTGCATCCTCTGAAGATTCAATCTGAGGAT
GTGCTGGGATTCTTTCCCAGCCGAACTAATGGAAAC	GCGCTGTAGCTGCTTTAGTTTTGTTTGCGGGTTTTGCC
GTGCTGGGATTCTTTCCCAGCCGAACTAATGGAAAC	CCCCTAGAAGGCTCAGGAAGGTGGGTCAAAATCGTTTCAA
GTGCTGGGATTCTTTCCCAGCCGAACTAATGGAAAC	TCGTTTAGTACTGGAACTGTTCTAAACAACGCCAA
GTGCTGGGATTCTTTCCCAGCCGAACTAATGGAAAC	GCTAAACTCGATGGGAGTATAGAATACCTGATATT
GTGCTGGGATTCTTTCCCAGCCGAACTAATGGAAAC	CTTAGAAGAGCTAGAAAACTGTTTGAGAATGCCCAA
GTGCTGGGATTCTTTCCCAGCCGAACTAATGGAAAC	CAGCGGGGACGGGCAAGGACGGCAAAGGCGGAGCG
GTGCTGGGATTCTTTCCCAGCCGAACTAATGGAAAC	CTTCAATTGCTTTTAGATTTTCATTCAGATAAAT
GTGCTGGGATTCTTTCCCAGCCGAACTAATGGAAAC	TAATAAAACTCTAAATTAAGGTTGATTGTATCTCC
GTGCTGGGATTCTTTCCCAGCCGAACTAATGGAAAC	TTCGATAAGCCAAGACTGCTTAACCCCAGTCTTAAGGGA
GTGCTGGGATTCTTTCCCAGCCGAACTAATGGAAAC	TACTAAACTCTGCAAGTAACAAATTAGCAAGA
GTGCTGGGATTCTTTCCCAGCCGAACTAATGGAAAC	AAACCCCCTTAAAAACATCATTGTTTTTCTTGCTTT
GTGCTGGGATTCTTTCCCAGCCGAACTAATGGAAAC	GTCTTAAAATCTGCCACAAGATTATAAACGCCATAA
GTGCTGGGATTCTTTCCCAGCCGAACTAATGGAAAC	GAGCCGCGTTTAGTTCATCAAAAAAGATTAAGCAAGG
GTGCTGGGATTCTTTCCCAGCCGAACTAATGGAAAC	TCTTTCTTGGAAATTATTAAAGGCACACAAAAAACA
GTGCTGGGATTCTTTCCCAGCCGAACTAATGGAAAC	TTTTGGCTTCATCGAAGCCGAAGTCTCTTGCAA
GTGCTGGGATTCTTTCCCAGCCGAACTAATGGAAAC	ACAAGGCGCGAAACAACGTTTCTTCAACCCCCT
GTGCTGGGATTCTTTCCCAGCCGAACTAATGGAAAC	CAGGCAATTGCTCAACTGGTGGTTCAAATTGCATTTATT
GTGCTGGGATTCTTTCCCAGCCGAACTAATGGAAAC	AGCCTATCGCCAATCCTTTTTGCGCGAGCCAATCG
GTGCTGGGATTCTTTCCCAGCCGAACTAATGGAAAC	GCTAATTCAATAGGGGGCAATGAGCGAGGAATC
GTGCTGGGATTCTTTCCCAGCCGAACTAATGGAAAC	TAAAAGGCCTGAGATAACTCAGTCCCCTATCCAGAC
GTGCTGGGATTCTTTCCCAGCCGAACTAATGGAAAC	TATTGGTTACTGCCATTAATTTATCTAGCATAAT
GTGCTGGGATTCTTTCCCAGCCGAACTAATGGAAAC	TTCTCTTGATTCAAGTCGTTTGTTACCCTATGTATCA
GTGCTGGGATTCTTTCCCAGCCGAACTAATGGAAAC	TTAAAGGAAAATTTGGAATAGACAACCTGACGGAAGT
GTGCTGGGATTCTTTCCCAGCCGAACTAATGGAAAC	ATCTGTCTTAAATCGAAATGAAGGAGGTAGATT
GTGCTGGGATTCTTTCCCAGCCGAACTAATGGAAAC	TTCTCTTGATTCAAGTCGTTTGTTACCCTATGTATCA
GTGCTGGGATTCTTTCCCAGCCGAACTAATGGAAAC	TTAAAGGAAAATTTGGAATAGACAACCTGACGGAAGT
GTGCTGGGATTCTTTCCCAGCCGAACTAATGGAAAC	ATCTGTCTTAAATCGAAATGAAGGAGGTAGATT
GTGCTGGGATTCTTTCCCAGCCGAACTAATGGAAAC	AATTTGAACCTGAAATAATTCCAAAAGTAGCCGCTTC
GTGCTGGGATTCTTTCCCAGCCGAACTAATGGAAAC	TTCCCTTCTCAAGGAACGTGTAAATTTCTGAGTGG
GTGCTGGGATTCTTTCCCAGCCGAACTAATGGAAAC	ATCTGTCTTAAATCGAAATGAAGGAGGTAGATT
GTGCTGGGATTCTTTCCCAGCCGAACTAATGGAAAC	AGATGCCTGCGTTCTGTCTGTTACTCGTGCAATTG
GTGCTGGGATTCTTTCCCAGCCGAACTAATGGAAAC	TCTAGAGACACTAAAGATGTTGCAGAAGAAATTA
GTGCTGGGATTCTTTCCCAGCCGAACTAATGGAAAC	GCTTCTGTAGGATCGTTAGGTAATTTAGGTAAATTT
GTGCTGGGATTCTTTCCCAGCCGAACTAATGGAAAC	TGGGGAAAGCAATTTTTTCCTCTTGCGCTGAGGTT
GTGCTGGGATTCTTTCCCAGCCGAACTAATGGAAAC	CTGAAGGCAATTTAGATATTAAAGGCAAGCCAACTA
GTGCTGGGATTCTTTCCCAGCCGAACTAATGGAAAC	CGACCAGTAAGCGCAAGACCTTTTGGTAGCTTCAT
GTGCTGGGATTCTTTCCCAGCCGAACTAATGGAAAC	ACAGAGAAGGAAGCACCGCTAGGTTATGCTCATCCAA
GTGCTGGGATTCTTTCCCAGCCGAACTAATGGAAAC	AAGCGTTAGTAGCACCTATTGAATAAGCTAGAAAGA
GTGCTGGGATTCTTTCCCAGCCGAACTAATGGAAAC	TCTCCTGAATGGGATTACATAACTTCTCTACAGTCAA
GTGCTGGGATTCTTTCCCAGCCGAACTAATGGAAAC	ATCTCCTTCTGCAGTAGAAGGAGATCCGAATTAGGGCAC
GTGCTGGGATTCTTTCCCAGCCGAACTAATGGAAAC	AGCCAAATAATTGACTCCTGTAGGGACTTCGGGAG
GTGCTGGGATTCTTTCCCAGCCGAACTAATGGAAAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP040671.1\|WP_149817962.1\|538657_539581_-\|GTPase-Era	unknown	unknown	gnl\|CDD\|234624
NZ_CP040671.1\|WP_149817951.1\|531609_532764_+\|glycosyltransferase	unknown	unknown	gnl\|CDD\|132512
NZ_CP040671.1\|WP_149817978.1\|549277_550876_-\|radical-SAM-protein	unknown	unknown	gnl\|CDD\|188475
NZ_CP040671.1\|WP_149817984.1\|555129_556536_+\|CPBP-family-intramembrane-metalloprotease	unknown	unknown	gnl\|CDD\|376806
NZ_CP040671.1\|WP_149817964.1\|539590_540085_-\|biopolymer-transporter-ExbD	unknown	unknown	gnl\|CDD\|223917
NZ_CP040671.1\|WP_149817966.1\|540161_540737_+\|guanylate-kinase	unknown	unknown	gnl\|CDD\|234719
NZ_CP040671.1\|WP_149817953.1\|532816_532987_+\|ssl1498-family-light-harvesting-like-protein	unknown	unknown	unknown
NZ_CP040671.1\|WP_149817955.1\|532988_533606_+\|tRNA-(adenosine(37)-N6)-threonylcarbamoyltransferase-complex-dimerization-subunit-type-1-TsaB	unknown	unknown	gnl\|CDD\|274750
NZ_CP040671.1\|WP_149817958.1\|533595_535050_+\|NAD(P)H-binding-protein	unknown	unknown	gnl\|CDD\|369941
NZ_CP040671.1\|WP_149817972.1\|546705_547062_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040671.1\|WP_149817974.1\|548289_548484_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040671.1\|WP_149817970.1\|545677_546691_+\|zinc-binding-dehydrogenase	unknown	unknown	gnl\|CDD\|176233
NZ_CP040671.1\|WP_149817968.1\|540733_541456_-\|ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|223487
NZ_CP040671.1\|WP_149817976.1\|548487_548982_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|276808
NZ_CP040671.1\|WP_149821610.1\|535063_536320_+\|DNA-repair-exonuclease	unknown	unknown	gnl\|CDD\|277319
NZ_CP040671.1\|WP_149817980.1\|550876_553540_-\|type-I-DNA-topoisomerase	unknown	unknown	gnl\|CDD\|236048
NZ_CP040671.1\|WP_149821614.1\|554487_555000_-\|inorganic-diphosphatase	unknown	unknown	gnl\|CDD\|238239
NZ_CP040671.1\|WP_149817960.1\|536316_537060_-\|DUF928-domain-containing-protein	unknown	unknown	gnl\|CDD\|368720
NZ_CP040671.1\|WP_149821612.1\|547063_548044_-\|PDZ-domain-containing-protein	unknown	unknown	gnl\|CDD\|273938
NZ_CP040671.1\|WP_149817982.1\|553723_554491_+\|ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|224051

Protein	Function_ID	Function_description	E-value
NZ_CP040671.1\|WP_149817962.1\|538657_539581_-\|GTPase-Era	gnl\|CDD\|234624	PRK00089, era, GTPase Era; Reviewed.	3.95866e-167
NZ_CP040671.1\|WP_149817951.1\|531609_532764_+\|glycosyltransferase	gnl\|CDD\|132512	TIGR03472, HpnI, hopanoid biosynthesis associated glycosyl transferase protein HpnI. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The member of this clade from Acidithiobacillus ferrooxidans ATCC 23270 (AFE_0974) is found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. Similarly, in Ralstonia eutropha JMP134 (Reut_B4902) this gene is adjacent to HpnAB, IspH and HpnH (TIGR03470), although SHC itself is elsewhere in the genome. Notably, this gene (here named HpnI) and three others form a conserved set (HpnIJKL) which occur in a subset of all genomes containing the SHC enzyme. This relationship was discerned using the method of partial phylogenetic profiling. This group includes Zymomonas mobilis, the organism where the initial hopanoid biosynthesis locus was described consisting of the genes HpnA-E and SHC (HpnF). Continuing past SHC are found a phosphorylase enzyme (ZMO0873, i.e. HpnG, TIGR03468) and another radical SAM enzyme (ZMO0874), HpnH. Although discontinuous in Z. mobilis, we continue the gene symbol sequence with HpnIJKL. Hopanoids are known to feature polar glycosyl head groups in many organisms.	3.31742e-94
NZ_CP040671.1\|WP_149817978.1\|549277_550876_-\|radical-SAM-protein	gnl\|CDD\|188475	TIGR03960, radical_SAM_domain_protein, radical SAM family uncharacterized protein. This model describes a radical SAM protein, or protein region, regularly found paired with or fused to a region described by TIGR03936. PSI-BLAST analysis of TIGR03936 suggests a relationship to the tRNA pseudouridine synthase TruA, suggesting that this system may act in RNA modification. [Unknown function, Enzymes of unknown specificity].	1.17629e-98
NZ_CP040671.1\|WP_149817984.1\|555129_556536_+\|CPBP-family-intramembrane-metalloprotease	gnl\|CDD\|376806	pfam02517, Abi, CAAX protease self-immunity. Members of this family are probably proteases (after a isoprenyl group is attached to the Cys residue in the C-terminal CAAX motif of a protein to attach it to the membrane, the AAX tripeptide being removed by one of the CAAX prenyl proteases). The family contains the CAAX prenyl protease. The proteins contain a highly conserved Glu-Glu motif at the amino end of the alignment. The alignment also contains two histidine residues that may be involved in zinc binding. While they are involved in membrane anchoring of proteins in eukaryotes, little is known about their function in prokaryotes. In some known bacteriocin loci, Abi genes have been found downstream of bacteriocin structural genes where they are probably involved in self-immunity. Investigation of the bacteriocin-like loci in the Gram positive bacteria locus from Lactobacillus sakei 23K confirmed that the bacteriocin-like genes (sak23Kalphabeta) exhibited antimicrobial activity when expressed in a heterologous host and that the associated Abi gene (sak23Ki) conferred immunity against the cognate bacteriocin. Interestingly, the immunity genes from three similar systems conferred a high degree of cross-immunity against each other's bacteriocins, suggesting the recognition of a common receptor. Site-directed mutagenesis demonstrated that the conserved motifs constituting the putative proteolytic active site of the Abi proteins are essential for the immunity function of Sak23Ki - thus a new concept in self-immunity.	1.39258e-16
NZ_CP040671.1\|WP_149817964.1\|539590_540085_-\|biopolymer-transporter-ExbD	gnl\|CDD\|223917	COG0848, ExbD, Biopolymer transport protein [Intracellular trafficking and secretion].	1.77583e-35
NZ_CP040671.1\|WP_149817966.1\|540161_540737_+\|guanylate-kinase	gnl\|CDD\|234719	PRK00300, gmk, guanylate kinase; Provisional.	9.89365e-111
NZ_CP040671.1\|WP_149817955.1\|532988_533606_+\|tRNA-(adenosine(37)-N6)-threonylcarbamoyltransferase-complex-dimerization-subunit-type-1-TsaB	gnl\|CDD\|274750	TIGR03725, T6A_YeaZ, tRNA threonylcarbamoyl adenosine modification protein YeaZ. This family describes a protein family, YeaZ, now associated with the threonylcarbamoyl adenosine (t6A) tRNA modification. Members of this family may occur as fusions with ygjD (previously gcp) or the ribosomal protein N-acetyltransferase rimI, and is frequently encoded next to rimI. [Protein synthesis, tRNA and rRNA base modification].	4.35235e-34
NZ_CP040671.1\|WP_149817958.1\|533595_535050_+\|NAD(P)H-binding-protein	gnl\|CDD\|369941	pfam08547, CIA30, Complex I intermediate-associated protein 30 (CIA30). This protein is associated with mitochondrial Complex I intermediate-associated protein 30 (CIA30) in human and mouse. The family is also present in Schizosaccharomyces pombe which does not contain the NADH dehydrogenase component of complex I, or many of the other essential subunits. This means it is possible that this family of protein may not be directly involved in oxidative phosphorylation.	3.37706e-60
NZ_CP040671.1\|WP_149821614.1\|554487_555000_-\|inorganic-diphosphatase	gnl\|CDD\|238239	cd00412, pyrophosphatase, Inorganic pyrophosphatase. These enzymes hydrolyze inorganic pyrophosphate (PPi) to two molecules of orthophosphates (Pi). The reaction requires bivalent cations. The enzymes in general exist as homooligomers.	9.82046e-81
NZ_CP040671.1\|WP_149817970.1\|545677_546691_+\|zinc-binding-dehydrogenase	gnl\|CDD\|176233	cd08272, MDR6, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines.	2.36555e-147
NZ_CP040671.1\|WP_149817968.1\|540733_541456_-\|ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|223487	COG0410, LivF, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism].	1.15e-112
NZ_CP040671.1\|WP_149817976.1\|548487_548982_+\|hypothetical-protein	gnl\|CDD\|276808	sd00008, TPR_YbbN, C-terminal Tetratricopeptide repeat (TPR) region of YbbN and similar motifs. The Tetratricopeptide repeat (TPR) typically contains 34 amino acids and is found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans. It is present in a variety of proteins including those involved in chaperone, cell-cycle, transcription, and protein transport complexes. YbbN is a thioredoxin-like protein containing two tandem TPR repeats at the C-terminus, separated by two alpha helices. Its N-terminal thioredoxin-like domain is not a functional oxidoreductase. It functions in heat stress response and DNA synthesis as a chaperone or co-chaperone.	0.00535371
NZ_CP040671.1\|WP_149821610.1\|535063_536320_+\|DNA-repair-exonuclease	gnl\|CDD\|277319	cd00840, MPP_Mre11_N, Mre11 nuclease, N-terminal metallophosphatase domain. Mre11 (also known as SbcD in Escherichia coli) is a subunit of the MRX protein complex. This complex includes: Mre11, Rad50, and Xrs2/Nbs1, and plays a vital role in several nuclear processes including DNA double-strand break repair, telomere length maintenance, cell cycle checkpoint control, and meiotic recombination, in eukaryotes. During double-strand break repair, the MRX complex is required to hold the two ends of a broken chromosome together. In vitro studies show that Mre11 has 3'-5' exonuclease activity on dsDNA templates and endonuclease activity on dsDNA and ssDNA templates. In addition to the N-terminal phosphatase domain, the eukaryotic MRE11 members of this family have a C-terminal DNA binding domain (not included in this alignment model). MRE11-like proteins are found in prokaryotes and archaea was well as in eukaryotes. Mre11 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.	4.71707e-42
NZ_CP040671.1\|WP_149817980.1\|550876_553540_-\|type-I-DNA-topoisomerase	gnl\|CDD\|236048	PRK07561, PRK07561, DNA topoisomerase I subunit omega; Validated.	0
NZ_CP040671.1\|WP_149817960.1\|536316_537060_-\|DUF928-domain-containing-protein	gnl\|CDD\|368720	pfam06051, DUF928, Domain of Unknown Function (DUF928). Family of uncharacterized bacterial protein.	1.47297e-47
NZ_CP040671.1\|WP_149821612.1\|547063_548044_-\|PDZ-domain-containing-protein	gnl\|CDD\|273938	TIGR02037, Probable_periplasmic_serine_protease_do/HhoA-like, periplasmic serine protease, Do/DeqQ family. This family consists of a set proteins various designated DegP, heat shock protein HtrA, and protease DO. The ortholog in Pseudomonas aeruginosa is designated MucD and is found in an operon that controls mucoid phenotype. This family also includes the DegQ (HhoA) paralog in E. coli which can rescue a DegP mutant, but not the smaller DegS paralog, which cannot. Members of this family are located in the periplasm and have separable functions as both protease and chaperone. Members have a trypsin domain and two copies of a PDZ domain. This protein protects bacteria from thermal and other stresses and may be important for the survival of bacterial pathogens.// The chaperone function is dominant at low temperatures, whereas the proteolytic activity is turned on at elevated temperatures. [Protein fate, Protein folding and stabilization, Protein fate, Degradation of proteins, peptides, and glycopeptides].	2.28252e-109
NZ_CP040671.1\|WP_149817982.1\|553723_554491_+\|ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|224051	COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism].	8.41297e-151

>NZ_CP040671.1|WP_149817968.1|540733_541456_-|ATP-binding-cassette-domain-containing-protein
MSLLQVSDVYAGYIPDVDILRGVNFRLEAGELVAVIGPNGAGKSTLAKTIAGLLTPRLGTITLAGEDITYLRPNQIVKKGIGYVPQIANVFRTLTVEENLEMGAFTKTGNLKALKERVYDTFPRLAERRQQRAGTLSGGERQMLAMGRAMMLDPQIMVLDEPSAALSPALVNDVFAKIKEINAQGTAIILVEQNARKALAMSDRGYVLEMGKDRYEGLGSELLNDPKVGELYLGIVRAEP
>NZ_CP040671.1|WP_149817966.1|540161_540737_+|guanylate-kinase
MTSATPQPGQLIVITGPSGVGKGTLLRQLRQRHPELALSVSATTRPPRPTEVEGVDYYFVSVEEFKGMIAAGQLLEWAEFAGHYYGTPRDPLLQLIAQGKTVILEIELQGARQVRQSYPQARHIFILPPSLAELEHRLRSRGQDSEEAIARRLAQAETEIAAAPEFDVQIVNDDLEKSLIALETAIFSPVP
>NZ_CP040671.1|WP_149817964.1|539590_540085_-|biopolymer-transporter-ExbD
MAVKIHLPSESENARIEMLPLIDVVFCILTFFILAAVSLTRQQAITLNLPQASTSQAQSQKMLVVSIDPAGQLFVDKDPVNRSELYERLATYLKTNPQGVVILRASQVVSYNEVIQVLDLLRSVGGNRVALATQPVEQPVLRTETRPNPLPSPPANDQPTPSNP
>NZ_CP040671.1|WP_149817962.1|538657_539581_-|GTPase-Era
MEPISSIPVAPEGFRSGFVALVGRPNVGKSTLFNHLLGQKVAITSPVAQTTRNRLRGILTTATAQLIFVDTPGIHKPHHRLGEVLVHNAKGVLNRVDAIVFVVDAASPPGGGDRYVADLLTTTQSPVLVAINKIDLLPEGERPQRQQDYQTLGPWPTYPCSALTGEGVGLLQSAIAAQLPLGPYYYPPEMVTDQPERFIMAELIREQILHHTREEVPHSVAVTIEQVQQDRKLTRVHAVIYVERPTQKAIIIGQGGQLLKQMGTAARQEIETLIGGKIYLELFVKVRPRWRQDRLRLAELGYRIEKD
>NZ_CP040671.1|WP_149817960.1|536316_537060_-|DUF928-domain-containing-protein
MAIQFGIRPIAVPLSLAVVMIGAIAHASWASYRPPANIGRPGNREGAATRIARPMLLRESTGGIESCLTEPKQTVVALVPKDNNGLSSTPTPTLYSFIPANKGATLTLTLRDPQGTEVYRQERPAPTEAGIIGWPVENVALKNGVDYQWQLTLTCTNGTTAVKTVSWFRPMPLSPSQQQRIVQAKDVADAFAMAGYWYDTLNQLAKQRLAQPRNAQLQQKWQALLQSPAVQLANVANQPLIPLPPQP
>NZ_CP040671.1|WP_149821610.1|535063_536320_+|DNA-repair-exonuclease
MVRFLHVADVHLGFNKYRQENPNRTFDFFTAFDSALQTYAIEAQVDFVLIAGDLFEERLITPGILNQAEYVLDKVRSAGIPVLAIEGNHDNCPYGVKSNWLRYLCEKDYLYLLEPDESGQLQPWDAEAARGGYMDLPCGVRVIGSQWYGASAPRAIQQLASQIQALPPAAGATILLFHHGLEGQVSRYQGALRYNELLPLRQAGVDYLALGHIHRHYAVEDWIFNPGSVEANSIQENQQQNPRGVLLVTLEKGSPQAELKRDYWQRPIHRYTLTLTPSNTVSHVESQLQQLVQRHRSDMAEAIVEVTLKGEVGFERGDLSVRSLQEQLQEAANAFIFRLGFAATPVAYQTYRDATAEPPPRAQIEEQVFTDLLASVAEYRDRAEPLAKVLMHIKEDLLQPNANIPDLYQWLADLSLES
>NZ_CP040671.1|WP_149817958.1|533595_535050_+|NAD(P)H-binding-protein
MANNWELGRFLDTLRFFQALPFVGTLEPLRPVLSPLLPDLFKPPAYRGSGLVVVMGATGRTGQAVVKTLLAQGYAVRAGVRDRAKAENVLPSDPFLDIVVADVTQPLPADLLQGSRAVINCVGAKVQPNPNAPPPGLEIVGASPEAVEFEGMRHLLERAQPYFQSQPNTYPLFDYRYPTPPLKEVWGALDDVVMGGVSASQFYLKDHSALFTGLVSTENSGGFVSIRTRNLTPALNLQGYTGIQLRVRGDGQRYKFFLRSDPAWDGVGYAMSFDTVADQWITVELPFSHFIPVFRARTATNAPPLNVGQIYSLQLMLSKFEYDGALNPHFRPGTLSLEIESIQAYGGLPLPRMIQVSSAGVTRPQQADLDLKGQPLAVQYNDQLGGILTWKLAAENMLRQSGLPYTIVRPCGLTDQPGGKELRLDQGDRLTGSLSREDLAAFLVSLLNLPVACYRTVEVVATDQAAEAYPNWAARLAQIPSDRP
>NZ_CP040671.1|WP_149817955.1|532988_533606_+|tRNA-(adenosine(37)-N6)-threonylcarbamoyltransferase-complex-dimerization-subunit-type-1-TsaB
MLCLGFDTSDAPLVAGLYDLEADQLLEVKTWPLGRELASQLHPCLGELMGRYTWGELGAIAIGCGPGSFTGTRLGVVTARILAQQLEVPLLGLSSLGTMAWHYRDELIEQDGVVSRRAQQGHQYLGIYRYQGGSLNSLWGDRLLADHEAATLLATWPHPYKPLSPPNPTDYGRALLTWAAQQWHDTLRAGEKLPHWSSVVPLYGK
>NZ_CP040671.1|WP_149817953.1|532816_532987_+|ssl1498-family-light-harvesting-like-protein
MRYTTDEGGRLNNFAIEPRVYQAQPWTPQQKVRAALLVVGGLLLVAGLVAIAVGVS
>NZ_CP040671.1|WP_149817951.1|531609_532764_+|glycosyltransferase
MMVVLLLLSLLSITGSLFYIVAAALTYQFFTTQRTTRLESLPAVSILVPVCGLEARAWQNWSSLCEQDYPLYEVLFGVQDPSDPAIPLLKAICQTYPHRARWYLCQRICGLNRKASNVAQLFTHARYGVIVETDSDVQVRPHYLATLVQPLADPQVGVVTCGYIDHHPRRLGAAFLAMGRCLDFIPSVLVARCLDRGLRFAIGPTVLLRREVLEKIGGFEIALNRIGEDYQLGYAAWRAGYRVELSSYILDNDCADESFLKAVQRELRWSRSIRANRGNQYFGMVLMFGTVYSALLWGLFPTPWTLSVFLGVQGLRWLQAIMSMVLMGTPRLLLWLWLLPLRDVMSFLIWLGGCFGNRIYWRGRWLRVYRHGQLQEIVKDSQES
>NZ_CP040671.1|WP_149817970.1|545677_546691_+|zinc-binding-dehydrogenase
MKAVAITEFGEPDVLVLREMPEPQIQAANEVKIQLRAASVNPIDTKLRQRGTFFPDRRPAILGCDGAGVVVAVGAAVQRFRVGDEVYFCYGGLGDRGGCYAEYTVVPEVAVAHKPKTLSFIQAAALPLAVITAWEALGDRGAVPPLNVLSTAKTVLIHAGAGGVGHLAIQLARRSGATVATTISSAAKARFAERLGATLAINYTTSDWVQAVLDWTGGKGVDFALDTVGSTTFSETFKAVRPYGTLATLLEPAADTPWKIARQRNLLIQLTLMLTPQLMGLSDALAHQGKILEQVATLVDRGELEVVVDKTFPLGAAADAHRYLSQRLVQGKVVLVP
>NZ_CP040671.1|WP_149817972.1|546705_547062_+|hypothetical-protein
MVAQILAALLIGLEQAQGVPTWLSQTPHSDVYRVCRIFNGRLSYCGRWFTGETVLLQNNLYRTCRIFNGRLSYCGRWFTGETVLLQNNLYRTCRIFNGRLSYCGWWFTGEAVLSEPRR
>NZ_CP040671.1|WP_149821612.1|547063_548044_-|PDZ-domain-containing-protein
MVAEAGPAVVSIDTLRLRRSQEDSFLNPFPIPDVPLRQGQGSGFIFTPDGKIMTNAHVVEGATAVRVTLPDGRQYDGKVVGADSLTDVAVVQIEAENLPTVQLGNSDTLVPGEWAIAIGNPLGLSNTVTAGIISATGRASNEIGAADKRVSFIQTDAAINPGNSGGPLLNAAGQVVGVNTAVISQAQGLGFAIPINTAYRIAEQIITTGRAQHLYLGIRMVQLTPEVAAQIRQDQPNWTLNQTQGTLIVGVAPNSPAAKAGLQVGDWIAKINDVNQPSPQQVQSVVEQTKLGQTITLEIQRGDRRQTVSLQPEPMPPELYPSSQPE
>NZ_CP040671.1|WP_149817974.1|548289_548484_+|hypothetical-protein
MLTVISYLEQPMTFDSFFGPVTLQPGRNENVDERRWRNCKTHNADLQALLKKGLIVVEDVGVSS
>NZ_CP040671.1|WP_149817976.1|548487_548982_+|hypothetical-protein
MTDAVAALFQQGQQAFERGNYQQSIALLGQAAALAEGNAVRSGEISLWLVTAYSAAGDQGAAVSLCRQLQQHPDHHTRQESRRLLAILEAPQLKRRPEWYSEIPDLSHVGDRAYTSPYSRSPKKPSAAPPKPQEPPPPATPLPNAFIWLALTGLGVVTLLAAWL
>NZ_CP040671.1|WP_149817978.1|549277_550876_-|radical-SAM-protein
MNSPFAAETLLFERSRPRPEALRVIYGFPNTYSVGITSLGYQLVWAQLASRPDVAVSRLFTDVHEPLPRDPELVGFSFSWELDYGNLLALLEQLGIPIWQRDRHDRYPLIFGGGPVLTANPEPFADFFDVILLGDAEPLLDPFLTTMAQVRTAARSQQLEALAQVPGLYVPSLYAVGYASATGPIQGIEPRKPTVPATVTKQVHRGNTLAASTVVTPLAAWEKIYMVEVVRSCPELCRFCLASYLTLPFRTPSLETLIPAIERGLAVTDRLGLLGASITQHPEFPALIEYLGQPQFDHVRVSLASVRTNTVTESLAQLLSQRGSQSLTIAIETGSERLRQVINKKLGTEEILAAASHAQAGGLKGLKFYGMVGLPTETDADVAATVDLFRQLKKTAPRLRLTLGCSTFVPKAHTPFQWWGVQPVAEKRLKFLKKELAKLGIEFRPESYNDSLIQALISRGDRRLAPLLEQVRHYGTSLGSYRRAFKELRGQLPDFEAYVTAHWPEETILPWQHLQSGLPTKTLQNHLQRAIA
>NZ_CP040671.1|WP_149817980.1|550876_553540_-|type-I-DNA-topoisomerase
MSTLVIVESPTKAHTIRKFLPPDYRVEASMGHVRDLPRSAADVPPELKGEEWATLGVNVAAGFEPLYIVPKDKQKVVKDLKTALKTADELLLATDEDREGESISWHLLQLLEPKVPVRRMVFHEITEEAIREALRNCRDVNQQLVRAQETRRILDRLVGYTLSPLLWRKIAPHLSAGRVQSVAVRLLVQRERERLAFRKGQFWDLKATLDQRGTLFPARLVSVGGQRLATGNDFDPATGQVRNPDAVLLLDEAAANALRDRLLTETWTVTEQEERQQTRKPAPPFTTSTLQQEANRKLHLSAQETMRIAQKLYEEGYITYMRTDSVHLSEQAIAAARSCVEAMYGKAFLSPQPRQYTTKTKGAQEAHEAIRPAGSQFRTPQETGLKDRELELYELIWKRTVASQMADARVTLLTVSITAGDALFRAHGKRIDFPGFFRAYVEGSDDPDAALESQEVMLPLMQVGDILRCQALESVGHETQPPPRYTEASLVKALEQAGIGRPSTYATIISTIQDREYAIRRGNALEPTFTAFAVTALLEKYFPDLVDINFTARMEQTLDEISTGEVQWQPYLESFYLGENGLEQQVKERERTIESTEARAIALPELNAEVVVGRFGPFVVYQNGNGSEPIKASLPQDATPGSLTREQVEQLIRQKLEGPDKLGVHPETGEPIFLLTGRFGPYVQLGEATAANPKPKRASLPKGVSPDEVTLDLAITLLSLPRILGVHPETGKLIQANQGRFGPYIVHDPEGEKDYRSLRGEDDVYTITLERALELLATPKASRGRAKKQVLAVLGTHPEDGEPVQILDGPYGPYVNHGKVNASLPEGVSPETMTLEQALPLLAEKAPKKTRRSATATAPKPKSTTKKTSTKTATKTAKTSRRKSTET
>NZ_CP040671.1|WP_149817982.1|553723_554491_+|ATP-binding-cassette-domain-containing-protein
MTQRGAAPEIVIQTRHLNKYFGDRHVLKDINFTVAKQEVVALIGPSGSGKSTLLRCLNGLETYQSGEILILGHYLPPVPTPQQLRVIRRDVGMVFQNFNLFPHMTVLQNIIEAPILVRKLPRRVAIEMAESLLTKVGLLDKRDAYPRQLSGGQQQRVAIARALAMQPEILLFDEPTSALDPELVGDVLAVMRQLAEEAMTMVVVTHEMQFAREVSCRVVFLADGQIIEEGSPQELFRRPQQERTRLFLERVLVRH
>NZ_CP040671.1|WP_149821614.1|554487_555000_-|inorganic-diphosphatase
MDLSRIPAQPKPGVVNVLVEIAGGSRNKYEFDKEMNVFALDRVLYSAVTYPYDYGFIPNTLADDGDPLDGLVIMDEPTFPGCVIPARPIGMLEMIDSGDRDEKILCVPVDDPRYAEVTSLKDIAPHRLEEIAEFFRTYKNLQKKVTEILGWQDVDAVQPLVEKCIKAYKG
>NZ_CP040671.1|WP_149817984.1|555129_556536_+|CPBP-family-intramembrane-metalloprotease
MSLKRLVLAALSVMVAALMTVSLLGSYLEPQTQGQINLFQTNLSLQAREWQGLGDATTRDRLVGNVESAIKAYEEVLATPTPQNQPLRLQLGLLYADAGQHDRALNTWQLLINEAQGATRSTAEVLMGLWTDPPQLLPDAEPLIKNTLQGWFRDRALERLYELQQRSDALMTLTRAEQNRAQAAFYRLALLGVTPVLGSLIGIVLWIVWIYQHLRRRHQGNTLPPLTPVTWGWETLWEGMVIWFALFFAISLVLMPLVRSLIGLGLPLGSAMAQTLYALMSYGTTMVAGLGWLWYFLRPFGKRPADWLCWQGGLGGALRWGVGGYLAALPLVVVSSLISQALLKNQGGGNPLLEIILQSRDYTTFALLYVMVAVMAPFFEEILFRGFFFRSVQSYLPLGTAMGVTGLLFAIAHLNLADLLPLTVLGTVLSYIYWRSQNIGAAMILHSIWNSGSFLGLLLLSGGTEAGF

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Crispr_ID: NZ_CP040671_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP040671_3

1238569-1240771

Orphan

Consensus_repeat	Method
GTGCTGGGATTCTTTCCCAGCCGAACAAATGGAAAC	PILER-CR
GTGCTGGGATTCTTTCCCAGCCGAACAAATGGAAAC	CRISPRCasFinder
GTGCTGGGATTCTTTCCCAGCCGAACAAATGGAAAC	CRT
GTGCTGGGATTCTTTCCCAGCCGAACAAATGGAAAC	PILER-CR

30 spacers

The CRISPR arrays of NZ_CP040671_3

>merge|NZ_CP040671|3|1238569-1240771|PILER-CR,CRISPRCasFinder,CRT,PILER-CR
GTGCTGGGATTCTTTCCCAGCCGAACAAATGGAAACAAACCCAAGGGAACAAAAGCGCGTTTGCCCAAGAGTCGTGCTGGGATTCTTTCCCAGCCGAACAAATGGAAACTGGTGGGTACAGGCAAGCTTTATTGCCGCCGTTATAAGTGCTGGGATTCTTTCCCAGCCGAACAAATGGAAACGGAAAATACTGCGCCGATTTAATGCATAGGGATGAAAGTGCTGGGATTCTTTCCCAGCCGAACAAATGGAAACGTTTTGGTTTCGCCGCGGAAACCAAAATCCCTTGCGGTGCTGGGATTCTTTCCCAGCCGAACAAATGGAAACAGACGCACCGCCTAGGATTAAAAACCCAATAGGCACGTGCTGGGATTCTTTCCCAGCCGAACAAATGGAAACTACATTGCACTCTTTTTCACGATATCTAAAATATAGTGCTGGGATTCTTTCCCAGCCGAACAAATGGAAACTATCTAGAGCGGTTATCGACTAACGTGGAGCGTTATGTGCTGGGATTCTTTCCCAGCCGAACAAATGGAAACTAGATTTGTTGGTGAGAGGCACCACCAAGCAGTAGAGTGCTGGGATTCTTTCCCAGCCGAACAAATGGAAACTACTTCCTTCTGCAAAAGAGCCAGGTCGGAATTCGGACAGTGCTGGGATTCTTTCCCAGCCGAACAAATGGAAACCTGCCCGTCTCATCCCGTTTTGAGATGGCGGTCTGCGTGCTGGGATTCTTTCCCAGCCGAACAAATGGAAACCTTTGGATTGTATCTCCTTTTTCTAGGAGTGTGTAAGTGCTGGGATTCTTTCCCAGCCGAACAAATGGAAACGCGGTCTGCCCGAGATAGATGCCCCGGGAAAGCTCGTGCTGGGATTCTTTCCCAGCCGAACAAATGGAAACTACAAAACCTCTAACATTTCTAAAGTAGTTTTTCTTGTGCTGGGATTCTTTCCCAGCCGAACAAATGGAAACTCGTGAAGGATTTCGAAATTGTAGTCCTCGACGCTAGTGCTGGGATTCTTTCCCAGCCGAACAAATGGAAACTGCATAAGTTCATGCACAATTACGTATAGCTGCCCAGGTGCTGGGATTCTTTCCCAGCCGAACAAATGGAAACCCAATGACTAGCATCAATACTTTGCAGAGCATTTTGGTTAGGGAGTGCTGGGATTCTTTCCCAGCCGAACAAATGGAAACCCTTTATTAAAAGTTTATCGATTACAAGACACGTACGTGCTGGGATTCTTTCCCAGCCGAACAAATGGAAACCTACTTTTGCCGCCGTTTTTTTAGCCCTAACTGGTGCTGGGATTCTTTCCCAGCCGAACAAATGGAAACTTGTTTGACCTTTTTGTGTCAACACTGCTAATGCAGCAGTGCTGGGATTCTTTCCCAGCCGAACAAATGGAAACCTAAGAAGCCAGATAACGGCCTCTTTCATGGAATGTGCTGGGATTCTTTCCCAGCCGAACAAATGGAAACTTTAGGGTATGCTTTGTGTAAAACAGAAGTTTTAATGTGCTGGGATTCTTTCCCAGCCGAACAAATGGAAACTTGTATTCTTAAGGATACAAAAGGCACAACTCAAAGTGCTGGGATTCTTTCCCAGCCGAACAAATGGAAACGGGACTTCTTTTTCTTGTTCTTTGGGGAATTTTAGGTGCTGGGATTCTTTCCCAGCCGAACAAATGGAAACATCTAAGTAGGCCCTGAGGGCGTTTTCGATAAGCCAGTGCTGGGATTCTTTCCCAGCCGAACAAATGGAAACAAAGGCTTTCTGTATTCTTTCATGTCCAGTAAAAATGGTGCTGGGATTCTTTCCCAGCCGAACAAATGGAAACCCAAAACATAGTGTTCTCCTAAGTAAACTCCATGTGCTGGGATTCTTTCCCAGCCGAACAAATGGAAACTTAAAAAGGCAATAATTGTGTGGTCAAACTTTTTAAGTGCTGGGATTCTTTCCCAGCCGAACAAATGGAAACCTTAACAATATCCCCCCTTGACCCCTCAAAACTAACTGTGCTGGGATTCTTTCCCAGCCGAACAAATGGAAACCAGCTCAAACTCATAATGAATGACTGTGGAAAAAGTGTGCTGGGATTCTTTCCCAGCCGAACAAATGGAAACTTCAACTTGTAGTTGCATAATTAACCCTCCAGTAAGTGCTGGGATTCTTTCCCAGCCGAACAAATAGAAATC

>NZ_CP040671|3|3|1238569-1239616|PILER-CR
GTGCTGGGATTCTTTCCCAGCCGAACAAATGGAAAC	AAACCCAAGGGAACAAAAGCGCGTTTGCCCAAGAGTC
GTGCTGGGATTCTTTCCCAGCCGAACAAATGGAAAC	TGGTGGGTACAGGCAAGCTTTATTGCCGCCGTTATAA
GTGCTGGGATTCTTTCCCAGCCGAACAAATGGAAAC	GGAAAATACTGCGCCGATTTAATGCATAGGGATGAAA
GTGCTGGGATTCTTTCCCAGCCGAACAAATGGAAAC	GTTTTGGTTTCGCCGCGGAAACCAAAATCCCTTGCG
GTGCTGGGATTCTTTCCCAGCCGAACAAATGGAAAC	AGACGCACCGCCTAGGATTAAAAACCCAATAGGCAC
GTGCTGGGATTCTTTCCCAGCCGAACAAATGGAAAC	TACATTGCACTCTTTTTCACGATATCTAAAATATA
GTGCTGGGATTCTTTCCCAGCCGAACAAATGGAAAC	TATCTAGAGCGGTTATCGACTAACGTGGAGCGTTAT
GTGCTGGGATTCTTTCCCAGCCGAACAAATGGAAAC	TAGATTTGTTGGTGAGAGGCACCACCAAGCAGTAGA
GTGCTGGGATTCTTTCCCAGCCGAACAAATGGAAAC	TACTTCCTTCTGCAAAAGAGCCAGGTCGGAATTCGGACA
GTGCTGGGATTCTTTCCCAGCCGAACAAATGGAAAC	CTGCCCGTCTCATCCCGTTTTGAGATGGCGGTCTGC
GTGCTGGGATTCTTTCCCAGCCGAACAAATGGAAAC	CTTTGGATTGTATCTCCTTTTTCTAGGAGTGTGTAA
GTGCTGGGATTCTTTCCCAGCCGAACAAATGGAAAC	GCGGTCTGCCCGAGATAGATGCCCCGGGAAAGCTC
GTGCTGGGATTCTTTCCCAGCCGAACAAATGGAAAC	TACAAAACCTCTAACATTTCTAAAGTAGTTTTTCTT
GTGCTGGGATTCTTTCCCAGCCGAACAAATGGAAAC	TCGTGAAGGATTTCGAAATTGTAGTCCTCGACGCTA
GTGCTGGGATTCTTTCCCAGCCGAACAAATGGAAACTGCATAAGTTCATGCACAATTACGTATAGCTGCCCAGGTGCTGGGATTCTTTCCCAGCCGAACAAATGGAAACCCAATGACTAGCATCAATACTTTGCAGAGCATTTTGGTTAGGGAGTGCTGGGATTCTTTCCCAGCCGAACAAATGGAAAC	CCTTTATTAAAAGTTTATCGATTACAAGACACGTAC
GTGCTGGGATTCTTTCCCAGCCGAACAAATGGAAAC	CTACTTTTGCCGCCGTTTTTTTAGCCCTAACTG
GTGCTGGGATTCTTTCCCAGCCGAACAAATGGAAAC	TTGTTTGACCTTTTTGTGTCAACACTGCTAATGCAGCA
GTGCTGGGATTCTTTCCCAGCCGAACAAATGGAAAC	CTAAGAAGCCAGATAACGGCCTCTTTCATGGAAT
GTGCTGGGATTCTTTCCCAGCCGAACAAATGGAAAC	TTTAGGGTATGCTTTGTGTAAAACAGAAGTTTTAAT
GTGCTGGGATTCTTTCCCAGCCGAACAAATGGAAAC	TTGTATTCTTAAGGATACAAAAGGCACAACTCAAA
GTGCTGGGATTCTTTCCCAGCCGAACAAATGGAAAC	GGGACTTCTTTTTCTTGTTCTTTGGGGAATTTTAG
GTGCTGGGATTCTTTCCCAGCCGAACAAATGGAAAC	ATCTAAGTAGGCCCTGAGGGCGTTTTCGATAAGCCA
GTGCTGGGATTCTTTCCCAGCCGAACAAATGGAAAC	AAAGGCTTTCTGTATTCTTTCATGTCCAGTAAAAATG
GTGCTGGGATTCTTTCCCAGCCGAACAAATGGAAAC	CCAAAACATAGTGTTCTCCTAAGTAAACTCCAT
GTGCTGGGATTCTTTCCCAGCCGAACAAATGGAAAC	TTAAAAAGGCAATAATTGTGTGGTCAAACTTTTTAA
GTGCTGGGATTCTTTCCCAGCCGAACAAATGGAAAC	CTTAACAATATCCCCCCTTGACCCCTCAAAACTAACT
GTGCTGGGATTCTTTCCCAGCCGAACAAATGGAAAC	CAGCTCAAACTCATAATGAATGACTGTGGAAAAAGT
GTGCTGGGATTCTTTCCCAGCCGAACAAATGGAAAC	TTCAACTTGTAGTTGCATAATTAACCCTCCAGTAA


>NZ_CP040671|3|3|1238569-1240771|CRISPRCasFinder
GTGCTGGGATTCTTTCCCAGCCGAACAAATGGAAAC	AAACCCAAGGGAACAAAAGCGCGTTTGCCCAAGAGTC
GTGCTGGGATTCTTTCCCAGCCGAACAAATGGAAAC	TGGTGGGTACAGGCAAGCTTTATTGCCGCCGTTATAA
GTGCTGGGATTCTTTCCCAGCCGAACAAATGGAAAC	GGAAAATACTGCGCCGATTTAATGCATAGGGATGAAA
GTGCTGGGATTCTTTCCCAGCCGAACAAATGGAAAC	GTTTTGGTTTCGCCGCGGAAACCAAAATCCCTTGCG
GTGCTGGGATTCTTTCCCAGCCGAACAAATGGAAAC	AGACGCACCGCCTAGGATTAAAAACCCAATAGGCAC
GTGCTGGGATTCTTTCCCAGCCGAACAAATGGAAAC	TACATTGCACTCTTTTTCACGATATCTAAAATATA
GTGCTGGGATTCTTTCCCAGCCGAACAAATGGAAAC	TATCTAGAGCGGTTATCGACTAACGTGGAGCGTTAT
GTGCTGGGATTCTTTCCCAGCCGAACAAATGGAAAC	TAGATTTGTTGGTGAGAGGCACCACCAAGCAGTAGA
GTGCTGGGATTCTTTCCCAGCCGAACAAATGGAAAC	TACTTCCTTCTGCAAAAGAGCCAGGTCGGAATTCGGACA
GTGCTGGGATTCTTTCCCAGCCGAACAAATGGAAAC	CTGCCCGTCTCATCCCGTTTTGAGATGGCGGTCTGC
GTGCTGGGATTCTTTCCCAGCCGAACAAATGGAAAC	CTTTGGATTGTATCTCCTTTTTCTAGGAGTGTGTAA
GTGCTGGGATTCTTTCCCAGCCGAACAAATGGAAAC	GCGGTCTGCCCGAGATAGATGCCCCGGGAAAGCTC
GTGCTGGGATTCTTTCCCAGCCGAACAAATGGAAAC	TACAAAACCTCTAACATTTCTAAAGTAGTTTTTCTT
GTGCTGGGATTCTTTCCCAGCCGAACAAATGGAAAC	TCGTGAAGGATTTCGAAATTGTAGTCCTCGACGCTA
GTGCTGGGATTCTTTCCCAGCCGAACAAATGGAAAC	TGCATAAGTTCATGCACAATTACGTATAGCTGCCCAG
GTGCTGGGATTCTTTCCCAGCCGAACAAATGGAAAC	CCAATGACTAGCATCAATACTTTGCAGAGCATTTTGGTTAGGGA
GTGCTGGGATTCTTTCCCAGCCGAACAAATGGAAAC	CCTTTATTAAAAGTTTATCGATTACAAGACACGTAC
GTGCTGGGATTCTTTCCCAGCCGAACAAATGGAAAC	CTACTTTTGCCGCCGTTTTTTTAGCCCTAACTG
GTGCTGGGATTCTTTCCCAGCCGAACAAATGGAAAC	TTGTTTGACCTTTTTGTGTCAACACTGCTAATGCAGCA
GTGCTGGGATTCTTTCCCAGCCGAACAAATGGAAAC	CTAAGAAGCCAGATAACGGCCTCTTTCATGGAAT
GTGCTGGGATTCTTTCCCAGCCGAACAAATGGAAAC	TTTAGGGTATGCTTTGTGTAAAACAGAAGTTTTAAT
GTGCTGGGATTCTTTCCCAGCCGAACAAATGGAAAC	TTGTATTCTTAAGGATACAAAAGGCACAACTCAAA
GTGCTGGGATTCTTTCCCAGCCGAACAAATGGAAAC	GGGACTTCTTTTTCTTGTTCTTTGGGGAATTTTAG
GTGCTGGGATTCTTTCCCAGCCGAACAAATGGAAAC	ATCTAAGTAGGCCCTGAGGGCGTTTTCGATAAGCCA
GTGCTGGGATTCTTTCCCAGCCGAACAAATGGAAAC	AAAGGCTTTCTGTATTCTTTCATGTCCAGTAAAAATG
GTGCTGGGATTCTTTCCCAGCCGAACAAATGGAAAC	CCAAAACATAGTGTTCTCCTAAGTAAACTCCAT
GTGCTGGGATTCTTTCCCAGCCGAACAAATGGAAAC	TTAAAAAGGCAATAATTGTGTGGTCAAACTTTTTAA
GTGCTGGGATTCTTTCCCAGCCGAACAAATGGAAAC	CTTAACAATATCCCCCCTTGACCCCTCAAAACTAACT
GTGCTGGGATTCTTTCCCAGCCGAACAAATGGAAAC	CAGCTCAAACTCATAATGAATGACTGTGGAAAAAGT
GTGCTGGGATTCTTTCCCAGCCGAACAAATGGAAAC	TTCAACTTGTAGTTGCATAATTAACCCTCCAGTAA
GTGCTGGGATTCTTTCCCAGCCGAACAAATAGAAATC

>NZ_CP040671|3|3|1238569-1240770|CRT
GTGCTGGGATTCTTTCCCAGCCGAACAAATGGAAAC	AAACCCAAGGGAACAAAAGCGCGTTTGCCCAAGAGTC
GTGCTGGGATTCTTTCCCAGCCGAACAAATGGAAAC	TGGTGGGTACAGGCAAGCTTTATTGCCGCCGTTATAA
GTGCTGGGATTCTTTCCCAGCCGAACAAATGGAAAC	GGAAAATACTGCGCCGATTTAATGCATAGGGATGAAA
GTGCTGGGATTCTTTCCCAGCCGAACAAATGGAAAC	GTTTTGGTTTCGCCGCGGAAACCAAAATCCCTTGCG
GTGCTGGGATTCTTTCCCAGCCGAACAAATGGAAAC	AGACGCACCGCCTAGGATTAAAAACCCAATAGGCAC
GTGCTGGGATTCTTTCCCAGCCGAACAAATGGAAAC	TACATTGCACTCTTTTTCACGATATCTAAAATATA
GTGCTGGGATTCTTTCCCAGCCGAACAAATGGAAAC	TATCTAGAGCGGTTATCGACTAACGTGGAGCGTTAT
GTGCTGGGATTCTTTCCCAGCCGAACAAATGGAAAC	TAGATTTGTTGGTGAGAGGCACCACCAAGCAGTAGA
GTGCTGGGATTCTTTCCCAGCCGAACAAATGGAAAC	TACTTCCTTCTGCAAAAGAGCCAGGTCGGAATTCGGACA
GTGCTGGGATTCTTTCCCAGCCGAACAAATGGAAAC	CTGCCCGTCTCATCCCGTTTTGAGATGGCGGTCTGC
GTGCTGGGATTCTTTCCCAGCCGAACAAATGGAAAC	CTTTGGATTGTATCTCCTTTTTCTAGGAGTGTGTAA
GTGCTGGGATTCTTTCCCAGCCGAACAAATGGAAAC	GCGGTCTGCCCGAGATAGATGCCCCGGGAAAGCTC
GTGCTGGGATTCTTTCCCAGCCGAACAAATGGAAAC	TACAAAACCTCTAACATTTCTAAAGTAGTTTTTCTT
GTGCTGGGATTCTTTCCCAGCCGAACAAATGGAAAC	TCGTGAAGGATTTCGAAATTGTAGTCCTCGACGCTA
GTGCTGGGATTCTTTCCCAGCCGAACAAATGGAAAC	TGCATAAGTTCATGCACAATTACGTATAGCTGCCCAG
GTGCTGGGATTCTTTCCCAGCCGAACAAATGGAAAC	CCAATGACTAGCATCAATACTTTGCAGAGCATTTTGGTTAGGGA
GTGCTGGGATTCTTTCCCAGCCGAACAAATGGAAAC	CCTTTATTAAAAGTTTATCGATTACAAGACACGTAC
GTGCTGGGATTCTTTCCCAGCCGAACAAATGGAAAC	CTACTTTTGCCGCCGTTTTTTTAGCCCTAACTG
GTGCTGGGATTCTTTCCCAGCCGAACAAATGGAAAC	TTGTTTGACCTTTTTGTGTCAACACTGCTAATGCAGCA
GTGCTGGGATTCTTTCCCAGCCGAACAAATGGAAAC	CTAAGAAGCCAGATAACGGCCTCTTTCATGGAAT
GTGCTGGGATTCTTTCCCAGCCGAACAAATGGAAAC	TTTAGGGTATGCTTTGTGTAAAACAGAAGTTTTAAT
GTGCTGGGATTCTTTCCCAGCCGAACAAATGGAAAC	TTGTATTCTTAAGGATACAAAAGGCACAACTCAAA
GTGCTGGGATTCTTTCCCAGCCGAACAAATGGAAAC	GGGACTTCTTTTTCTTGTTCTTTGGGGAATTTTAG
GTGCTGGGATTCTTTCCCAGCCGAACAAATGGAAAC	ATCTAAGTAGGCCCTGAGGGCGTTTTCGATAAGCCA
GTGCTGGGATTCTTTCCCAGCCGAACAAATGGAAAC	AAAGGCTTTCTGTATTCTTTCATGTCCAGTAAAAATG
GTGCTGGGATTCTTTCCCAGCCGAACAAATGGAAAC	CCAAAACATAGTGTTCTCCTAAGTAAACTCCAT
GTGCTGGGATTCTTTCCCAGCCGAACAAATGGAAAC	TTAAAAAGGCAATAATTGTGTGGTCAAACTTTTTAA
GTGCTGGGATTCTTTCCCAGCCGAACAAATGGAAAC	CTTAACAATATCCCCCCTTGACCCCTCAAAACTAACT
GTGCTGGGATTCTTTCCCAGCCGAACAAATGGAAAC	CAGCTCAAACTCATAATGAATGACTGTGGAAAAAGT
GTGCTGGGATTCTTTCCCAGCCGAACAAATGGAAAC	TTCAACTTGTAGTTGCATAATTAACCCTCCAGTAA
GTGCTGGGATTCTTTCCCAGCCGAACAAATAGAAAT

>NZ_CP040671|3|4|1239734-1240770|PILER-CR
	AAACCCAAGGGAACAAAAGCGCGTTTGCCCAAGAGTC
GTGCTGGGATTCTTTCCCAGCCGAACAAATGGAAAC	TGGTGGGTACAGGCAAGCTTTATTGCCGCCGTTATAA
GTGCTGGGATTCTTTCCCAGCCGAACAAATGGAAAC	GGAAAATACTGCGCCGATTTAATGCATAGGGATGAAA
GTGCTGGGATTCTTTCCCAGCCGAACAAATGGAAAC	GTTTTGGTTTCGCCGCGGAAACCAAAATCCCTTGCG
GTGCTGGGATTCTTTCCCAGCCGAACAAATGGAAAC	AGACGCACCGCCTAGGATTAAAAACCCAATAGGCAC
GTGCTGGGATTCTTTCCCAGCCGAACAAATGGAAAC	TACATTGCACTCTTTTTCACGATATCTAAAATATA
GTGCTGGGATTCTTTCCCAGCCGAACAAATGGAAAC	TATCTAGAGCGGTTATCGACTAACGTGGAGCGTTAT
GTGCTGGGATTCTTTCCCAGCCGAACAAATGGAAAC	TAGATTTGTTGGTGAGAGGCACCACCAAGCAGTAGA
GTGCTGGGATTCTTTCCCAGCCGAACAAATGGAAAC	TACTTCCTTCTGCAAAAGAGCCAGGTCGGAATTCGGACA
GTGCTGGGATTCTTTCCCAGCCGAACAAATGGAAAC	CTGCCCGTCTCATCCCGTTTTGAGATGGCGGTCTGC
GTGCTGGGATTCTTTCCCAGCCGAACAAATGGAAAC	CTTTGGATTGTATCTCCTTTTTCTAGGAGTGTGTAA
GTGCTGGGATTCTTTCCCAGCCGAACAAATGGAAAC	GCGGTCTGCCCGAGATAGATGCCCCGGGAAAGCTC
GTGCTGGGATTCTTTCCCAGCCGAACAAATGGAAAC	TACAAAACCTCTAACATTTCTAAAGTAGTTTTTCTT
GTGCTGGGATTCTTTCCCAGCCGAACAAATGGAAAC	TCGTGAAGGATTTCGAAATTGTAGTCCTCGACGCTA
GTGCTGGGATTCTTTCCCAGCCGAACAAATGGAAACTGCATAAGTTCATGCACAATTACGTATAGCTGCCCAGGTGCTGGGATTCTTTCCCAGCCGAACAAATGGAAACCCAATGACTAGCATCAATACTTTGCAGAGCATTTTGGTTAGGGAGTGCTGGGATTCTTTCCCAGCCGAACAAATGGAAAC	CCTTTATTAAAAGTTTATCGATTACAAGACACGTAC
GTGCTGGGATTCTTTCCCAGCCGAACAAATGGAAAC	CTACTTTTGCCGCCGTTTTTTTAGCCCTAACTG
GTGCTGGGATTCTTTCCCAGCCGAACAAATGGAAAC	TTGTTTGACCTTTTTGTGTCAACACTGCTAATGCAGCA
GTGCTGGGATTCTTTCCCAGCCGAACAAATGGAAAC	CTAAGAAGCCAGATAACGGCCTCTTTCATGGAAT
GTGCTGGGATTCTTTCCCAGCCGAACAAATGGAAAC	TTTAGGGTATGCTTTGTGTAAAACAGAAGTTTTAAT
GTGCTGGGATTCTTTCCCAGCCGAACAAATGGAAAC	TTGTATTCTTAAGGATACAAAAGGCACAACTCAAA
GTGCTGGGATTCTTTCCCAGCCGAACAAATGGAAAC	GGGACTTCTTTTTCTTGTTCTTTGGGGAATTTTAG
GTGCTGGGATTCTTTCCCAGCCGAACAAATGGAAAC	ATCTAAGTAGGCCCTGAGGGCGTTTTCGATAAGCCA
GTGCTGGGATTCTTTCCCAGCCGAACAAATGGAAAC	AAAGGCTTTCTGTATTCTTTCATGTCCAGTAAAAATG
GTGCTGGGATTCTTTCCCAGCCGAACAAATGGAAAC	CCAAAACATAGTGTTCTCCTAAGTAAACTCCAT
GTGCTGGGATTCTTTCCCAGCCGAACAAATGGAAAC	TTAAAAAGGCAATAATTGTGTGGTCAAACTTTTTAA
GTGCTGGGATTCTTTCCCAGCCGAACAAATGGAAAC	CTTAACAATATCCCCCCTTGACCCCTCAAAACTAACT
GTGCTGGGATTCTTTCCCAGCCGAACAAATGGAAAC	CAGCTCAAACTCATAATGAATGACTGTGGAAAAAGT
GTGCTGGGATTCTTTCCCAGCCGAACAAATGGAAAC	TTCAACTTGTAGTTGCATAATTAACCCTCCAGTAA
GTGCTGGGATTCTTTCCCAGCCGAACAAATAGAAAT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP040671.1\|WP_149819215.1\|1248710_1249670_-\|FHA-domain-containing-protein	unknown	unknown	gnl\|CDD\|366133
NZ_CP040671.1\|WP_149819202.1\|1240796_1241288_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040671.1\|WP_149819218.1\|1250338_1250713_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040671.1\|WP_149819196.1\|1231103_1233035_-\|PBP1A-family-penicillin-binding-protein	unknown	unknown	gnl\|CDD\|273955
NZ_CP040671.1\|WP_149819190.1\|1228922_1229819_-\|LD-carboxypeptidase	unknown	unknown	gnl\|CDD\|224534
NZ_CP040671.1\|WP_149819188.1\|1227229_1228777_-\|NAD(P)H-quinone-oxidoreductase-subunit-N	unknown	unknown	gnl\|CDD\|235044
NZ_CP040671.1\|WP_149819208.1\|1243602_1244844_+\|tryptophan-synthase-subunit-beta	unknown	unknown	gnl\|CDD\|235288
NZ_CP040671.1\|WP_149819206.1\|1242777_1243554_+\|DUF1350-domain-containing-protein	unknown	unknown	gnl\|CDD\|115718
NZ_CP040671.1\|WP_149819186.1\|1226841_1227177_-\|rhodanese-related-sulfurtransferase	unknown	unknown	gnl\|CDD\|238786
NZ_CP040671.1\|WP_149819192.1\|1229820_1230357_-\|DUF2808-domain-containing-protein	unknown	unknown	gnl\|CDD\|371328
NZ_CP040671.1\|WP_149819194.1\|1230360_1230918_-\|transcriptional-repressor	unknown	unknown	gnl\|CDD\|366663
NZ_CP040671.1\|WP_149819198.1\|1234469_1234799_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|369811
NZ_CP040671.1\|WP_149819212.1\|1246245_1248642_-\|endonuclease-MutS2	unknown	unknown	gnl\|CDD\|234750
NZ_CP040671.1\|WP_149819210.1\|1244845_1246234_-\|asparagine--tRNA-ligase	unknown	unknown	gnl\|CDD\|235176
NZ_CP040671.1\|WP_149819216.1\|1249865_1250342_+\|DNA-starvation/stationary-phase-protection-protein	unknown	unknown	gnl\|CDD\|153102
NZ_CP040671.1\|WP_149819204.1\|1241481_1242705_-\|F420-0:Gamma-glutamyl-ligase	unknown	unknown	unknown
NZ_CP040671.1\|WP_149819200.1\|1234807_1237546_+\|insulinase-family-protein	unknown	unknown	gnl\|CDD\|223685
NZ_CP040671.1\|WP_149819220.1\|1250794_1254190_-\|EAL-domain-containing-protein	unknown	unknown	gnl\|CDD\|238923
NZ_CP040671.1\|WP_149821714.1\|1237550_1238273_+\|cytochrome-c-biogenesis-protein-CcdA	unknown	unknown	gnl\|CDD\|280792
NZ_CP040671.1\|WP_149821712.1\|1233185_1234412_+\|tyrosine--tRNA-ligase	unknown	unknown	gnl\|CDD\|235645

Protein	Function_ID	Function_description	E-value
NZ_CP040671.1\|WP_149819215.1\|1248710_1249670_-\|FHA-domain-containing-protein	gnl\|CDD\|366133	pfam00498, FHA, FHA domain. The FHA (Forkhead-associated) domain is a phosphopeptide binding motif.	3.81101e-22
NZ_CP040671.1\|WP_149819196.1\|1231103_1233035_-\|PBP1A-family-penicillin-binding-protein	gnl\|CDD\|273955	TIGR02074, Includes:_Penicillin-insensitive_transglycosylase, penicillin-binding protein, 1A family. Bacterial that synthesize a cell wall of peptidoglycan (murein) generally have several transglycosylases and transpeptidases for the task. This family consists of bifunctional transglycosylase/transpeptidase penicillin-binding proteins (PBP). In the Proteobacteria, this family includes PBP 1A but not the paralogous PBP 1B (TIGR02071). This family also includes related proteins, often designated PBP 1A, from other bacterial lineages. [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan].	0
NZ_CP040671.1\|WP_149819190.1\|1228922_1229819_-\|LD-carboxypeptidase	gnl\|CDD\|224534	COG1619, LdcA, Uncharacterized proteins, homologs of microcin C7 resistance protein MccF [Defense mechanisms].	2.42874e-98
NZ_CP040671.1\|WP_149819188.1\|1227229_1228777_-\|NAD(P)H-quinone-oxidoreductase-subunit-N	gnl\|CDD\|235044	PRK02504, PRK02504, NAD(P)H-quinone oxidoreductase subunit N.	0
NZ_CP040671.1\|WP_149819208.1\|1243602_1244844_+\|tryptophan-synthase-subunit-beta	gnl\|CDD\|235288	PRK04346, PRK04346, tryptophan synthase subunit beta; Validated.	0
NZ_CP040671.1\|WP_149819206.1\|1242777_1243554_+\|DUF1350-domain-containing-protein	gnl\|CDD\|115718	pfam07082, DUF1350, Protein of unknown function (DUF1350). This family consists of several hypothetical proteins from both cyanobacteria and plants. Members of this family are typically around 250 residues in length. The function of this family is unknown but the species distribution indicates that the family may be involved in photosynthesis.	1.06856e-160
NZ_CP040671.1\|WP_149819186.1\|1226841_1227177_-\|rhodanese-related-sulfurtransferase	gnl\|CDD\|238786	cd01528, RHOD_2, Member of the Rhodanese Homology Domain superfamily, subgroup 2. Subgroup 2 includes uncharacterized putative rhodanese-related domains.	1.97261e-40
NZ_CP040671.1\|WP_149819192.1\|1229820_1230357_-\|DUF2808-domain-containing-protein	gnl\|CDD\|371328	pfam10989, DUF2808, Protein of unknown function (DUF2808). This family of proteins with unknown function appears to be restricted to Cyanobacteria.	9.79685e-38
NZ_CP040671.1\|WP_149819194.1\|1230360_1230918_-\|transcriptional-repressor	gnl\|CDD\|366663	pfam01475, FUR, Ferric uptake regulator family. This family includes metal ion uptake regulator proteins, that bind to the operator DNA and controls transcription of metal ion-responsive genes. This family is also known as the FUR family.	4.80348e-49
NZ_CP040671.1\|WP_149819198.1\|1234469_1234799_+\|hypothetical-protein	gnl\|CDD\|369811	pfam08317, Spc7, Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.	0.00289765
NZ_CP040671.1\|WP_149819212.1\|1246245_1248642_-\|endonuclease-MutS2	gnl\|CDD\|234750	PRK00409, PRK00409, recombination and DNA strand exchange inhibitor protein; Reviewed.	0
NZ_CP040671.1\|WP_149819210.1\|1244845_1246234_-\|asparagine--tRNA-ligase	gnl\|CDD\|235176	PRK03932, asnC, asparaginyl-tRNA synthetase; Validated.	0
NZ_CP040671.1\|WP_149819216.1\|1249865_1250342_+\|DNA-starvation/stationary-phase-protection-protein	gnl\|CDD\|153102	cd01043, DPS, DPS protein, ferritin-like diiron-binding domain. DPS (DNA Protecting protein under Starved conditions) domain is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins. Some DPS proteins nonspecifically bind DNA, protecting it from cleavage caused by reactive oxygen species such as the hydroxyl radicals produced during oxidation of Fe(II) by hydrogen peroxide. These proteins assemble into dodecameric structures, some form DPS-DNA co-crystalline complexes, and possess iron and H2O2 detoxification capabilities. Expression of DPS is induced by oxidative or nutritional stress, including metal ion starvation. Members of the DPS family are homopolymers formed by 12 four-helix bundle subunits that assemble with 23 symmetry into a hollow shell. The DPS ferroxidase site is unusual in that it is not located in a four-helix bundle as in ferritin, but is shared by 2-fold symmetry-related subunits providing the iron ligands. Many DPS sequences (e.g., E. coli) display an N-terminal extension of variable length that contains two or three positively charged lysine residues that extends into the solvent and is thought to play an important role in the stabilization of the complex with DNA. DPS Listeria Flp, Bacillus anthracis Dlp-1 and Dlp-2, and Helicobacter pylori HP-NAP which lack the N-terminal extension, do not bind DNA. DPS proteins from Helicobacter pylori, Treponema pallidum, and Borrelia burgdorferi are highly immunogenic.	2.27779e-47
NZ_CP040671.1\|WP_149819200.1\|1234807_1237546_+\|insulinase-family-protein	gnl\|CDD\|223685	COG0612, PqqL, Predicted Zn-dependent peptidases [General function prediction only].	1.50525e-99
NZ_CP040671.1\|WP_149819220.1\|1250794_1254190_-\|EAL-domain-containing-protein	gnl\|CDD\|238923	cd01948, EAL, EAL domain. This domain is found in diverse bacterial signaling proteins. It is called EAL after its conserved residues and is also known as domain of unknown function 2 (DUF2). The EAL domain has been shown to stimulate degradation of a second messenger, cyclic di-GMP, and is a good candidate for a diguanylate phosphodiesterase function. Together with the GGDEF domain, EAL might be involved in regulating cell surface adhesiveness in bacteria.	3.87951e-89
NZ_CP040671.1\|WP_149821714.1\|1237550_1238273_+\|cytochrome-c-biogenesis-protein-CcdA	gnl\|CDD\|280792	pfam02683, DsbD, Cytochrome C biogenesis protein transmembrane region. This family consists of the transmembrane (i.e. non-catalytic) region of Cytochrome C biogenesis proteins also known as disulphide interchange proteins. These proteins posses a protein disulphide isomerase like domain that is not found within the aligned region of this family.	6.82915e-42
NZ_CP040671.1\|WP_149821712.1\|1233185_1234412_+\|tyrosine--tRNA-ligase	gnl\|CDD\|235645	PRK05912, PRK05912, tyrosyl-tRNA synthetase; Validated.	0

>NZ_CP040671.1|WP_149821714.1|1237550_1238273_+|cytochrome-c-biogenesis-protein-CcdA
MASLTLQLYQLEQWANQWVSGQLSSLSVMSVGIIFLAGLLTSLTPCTLSMLPITVGYIAGYATKQNSSVLRQSLWFALGLATTLTLLGMIAAVAGRIYGQVGWGLTIVVSLVAIAMGLNLLNALPLSFPRSRFLEELPDRVPAGLQAYTLGATFGLVAAPCSTPVLATLLAWVATTQKLVVGAGLLLAYTTGYVAPLILVGVFSGALQKLLALRQWSSWITPVSGVLLIAFGVIALAIRL
>NZ_CP040671.1|WP_149819200.1|1234807_1237546_+|insulinase-family-protein
MTLGLVPRFVKILLFIGLMLLSTSLAVIFPLHTVEGLGSGVTKTVLDNGLTVLIKEIPTAPVVSLQVWYRVGSRHEPKGENGIAHQLEHLMFKGTKSRPVQFGQLFYALGSASNAFTSYDMTAYHHTVRADQLEPLLILEADRLRNILMTPEALESEKRVVISELQGYENSPEYRLSRAVMAALYPHHPYGLPVGGTASDVEQFTLPAVKSFYHQYYRPDNAVVVIAGDVRPPRALELVKKTFGQIPRPTDPLKSPSLPPPTAGQAQRICLTEPGSAPLLQILVPIPAMTHPDQAALDVLDMLLSGGRSSYLYQELMETGQASSAYSYVAALQAGGWFEIGAIAAPEQSLETIEQTIGQILHQLAEHPLSAAELQRAKQQLKANFILRNRDIDAQASQLANDETLTGDYRFSDRHLAAIEKVTAADVQRVVQTYFGRDRWIVGEFIPSEFADVELSGRPGAQTTAHNLVGEPVDPQTIAAYLPQGSGQAAPEVKNNGVETFTLKNGLRVLLLVDRSTPTITLAGRIDAGTAYDLLTQPGVAHLTAANLLNGTRRKNALTLAQTLEDRGISLEFSAFRDGVDIEGYALASELPTLLQTLGEVLQEATFPEPEFKLSQQRYLTALSLEADDPVRWGRRVLQETLYPANHPLHPFATPESVQAIQRPDLLNFYRAAYTPDHTILALVGDFDPVEVRSRLNEIFGSWQPQTDPLSLTFPAVSPPEQTLFKNAVIAGKSQAITYLGAPGIDRRDSRFYAAILMNHILGGDTLASRLGTEIRDRQGLTYGIYSFFSASRQAGPFIIQLQTAPEDTAKAIQATLQLLREARRQGFTAAELDAAKRSLSNTYIVELANVDVVARTLLGNASVGLPPAELQQFSDRLQAVTLEQVNQALRDLLDPERLVIVTAGPPVAFNL
>NZ_CP040671.1|WP_149819198.1|1234469_1234799_+|hypothetical-protein
MSEQEFQAKVLSELQALRVDVEKLGTDVEKLQTDVEKLQTDVHKLQGDVSELATQVKNQEYKFEVYQRGTDAMVRMATTIIIAAASVVVLASLSPAITALVSAIAHQGN
>NZ_CP040671.1|WP_149821712.1|1233185_1234412_+|tyrosine--tRNA-ligase
MSSDLEATIARLQRGVVETFPHVPDSTKPEENLWAYLRQTERPLRVKLGIDPTGSEIHLGHSIVLRKLRQFQDAGHCAVLIIGDFTAQIGDPTGKSEVRKQLSPEEVAANVQTYLEQVKPILDFETPGRLEIRYNSEWLAKLDLRKILELLGTMTVGQMLAKEGFAERYAKETPIFLHEFLYPLMQGYDSVAVAADVELGGTDQKFNIAVGRDLQRHFRLPTVQFGLLMPILVGTDGVQKMSKSLGNYVALTESAASMYSKLEKIPDALVNQYIELLTDLPLDSLPPNPRDRQKALALEVVSQYHGRDLALQTQAELAAIVTQGQTAQAGSIPEYSLGEFQFPVKLTYVLSHTKLCPSSSEARRQIQGGGVRLNGEKVTDVDFTLTAPEPYVNQVLQVGKKKFLRFVP
>NZ_CP040671.1|WP_149819196.1|1231103_1233035_-|PBP1A-family-penicillin-binding-protein
MSTTTLGKHPSQTRPQDENFWHGVLRIANRTFLVGMTFGCAAIGGGLLGLAISFRNLPDVRSLRGYIPSETTHIYDVKGTLLVSLHDEENREVVPLSEISPNLKLAVMAIEDSSFYQHRGINPIGISRALMVNLTSGRTVQGGSTLTMQLVKNLFLSQDRSISRKVAEAVLAMRLEQIFSKDEILEMYLNQVYWGHNTYGVQTAAQSYFKKNAADLTLAEAAMMAGIIQAPEAYSPFVDFDLAKERQQLVLDRMVELDWITPQEAAAAAQEPIKLGEITSFQRSRSPWITDAVLQELTRQFGREAVIRGGMRVQSSLDVKVQKMAEEAIQRGYQTLRGSGVRADQLALAAVDPRTHYVKALVGGVDYNRSQFNRATQAMRQPGSAFKPFVFYAAYASGKYTPDSGINDSPVRYRDGSGWYVPRNYDGSFMGGMSMRMALATSRNIPAIVLGQEVGIERVIEICRTLGITSPMLPVVSLPLGAVDLTPLEMAAAYATFANNGWQSPTTTIIQVTDNNGNLLLDHTPRPKLVLDPWAAAALNNTMQSVITSGTGTAANIGRPAAGKTGTTSSERDIWFVGYVPQLSAAVWAGNDNYAPLGQGATGGGFMAPIWRDFMSQALKDVPIEDFTPMSKFQRPKPQRQTN
>NZ_CP040671.1|WP_149819194.1|1230360_1230918_-|transcriptional-repressor
MQTNIGRSSESSMPLYTAAALKAELNEKGWRLTPQRETILNIFQNLPKGNHLSAEDLHHELRKQGHSISLSTVYRTVKLMSRMGILRELELAEGHKHYELNTMSPHHHHHMVCVQCNRTMEFDNDTILKQALKQTEKYGLQLIDCQLTIYTICPEALRRGYPGLPENWVCSSAIAHGTEPPSRGK
>NZ_CP040671.1|WP_149819192.1|1229820_1230357_-|DUF2808-domain-containing-protein
MRRLFAIALVGIAALTPQSLGVEFPDGRVAFDQPPIFVEANTRYPQVWLTNTTYNFIVQIPTTAGEPLARLDIQQLPGIETIYFLPQRTRAFIGDRSHQPIPLAEVTFDGHSALLRVTFDPPVPPGSYLRVEVAPVRNPQWDGTYLFAVTAFPRGGDRAMGQNIGTGRLQFYRNSNFF
>NZ_CP040671.1|WP_149819190.1|1228922_1229819_-|LD-carboxypeptidase
MTVFATLPPPLQPGDRLAVAFPSGVLRQREPFWQGVACWQAQGYEVIVDEAAFAGWGYLAGADQQRRDRLRHLLQDNSIKGILCGRGGFGATRLLEQWQWPAVSPKWLIGFSDITALLWSYANQGVAGVHGPVLTTLAAEPLWSQQRLFDLVRGKPLEPLLGTGWGGGVVQGRLLVGNLTVATHLLGTPDCPSFENVILALEDVGEAPYRIDRMLTQWRCSGVLHQIQGIVLGRFSRCEDPTTQPNFRLIEVLQDRLGDLGLPIVSDLPFGHEGVNAALPVGVAAELDGDRGSLRLLL
>NZ_CP040671.1|WP_149819188.1|1227229_1228777_-|NAD(P)H-quinone-oxidoreductase-subunit-N
MDLVTLAGQLNAGTILPETIVIVTLLVVLLADLIQGRQADRWTPYFAIVGLGGAIATMIPLWTQPDTVSFFGSFISDHLSLFFRGLIALSALGTILMSIRYVEQTGSSLGEFMTILLTATVGGMFIAGAQELVFIFVALETLSIASYLLTGYTKRDSRSNEAALKYLLIGAASSAIFLYGSSLLYGLSGGYTQLPEIAQALSAESLGLVVALVFVIAGISFKISAVPFHQWTPDVYEGAPTPVVAFLSVGSKAAGFALAIRFLTLAFPSVTDQWQLIFTVLAILSMILGNVVALAQTSMKRMLAYSSIGQAGFVMIGFVVGTEAGYASMLFYLLVYLFMNLGAFTCVILFSLRTGTDQISEYAGLYQKDPLLTLGLSLCLLSLGGIPPLAGFFGKIYLFWAGWQAGAYGLVLLGLLTSVISIYYYIRVVKMMVVKEPQEMSLAVQNYPEISWSTFGMRPLQVGLVMTVIATSLAGILANPLFNLVNTAVLDVPQVAHQPTAIEVAYQNLPPAGKS
>NZ_CP040671.1|WP_149819186.1|1226841_1227177_-|rhodanese-related-sulfurtransferase
MLGQITVVELAQRLATEADTLQLIDVREPEEWAIAHLPHFTPLPLSAFPQWSPQICQLFDPDRETLVLCHHGVRSAQMGHWLIQQGFRNVKNIVGGIDAYAAAVDPTLPRY
>NZ_CP040671.1|WP_149819202.1|1240796_1241288_+|hypothetical-protein
MGILSEVLQRATASPPITLKTLATEVVVPLYSRYSGANLASYSRLDERFVQKMTFIPLGFFLPSSSKILYAILKDGKLPSDWAPSIQFSRDGTLIDKTGWSDIANMTSSAFRKLPRGLQGKIISLLQLQADKHVLLNYSESWQSLLWLPAEYQRLDVVDTAAD
>NZ_CP040671.1|WP_149819204.1|1241481_1242705_-|F420-0:Gamma-glutamyl-ligase
MMIATVIGIGAAALGFLALLVAIGLEGRYRQRPAHPLEVIRATWNLEIYEPTHYRFVGLLGLSNPHRGLEVMVPDLRAEVVLLSDGRVDMIQTDVQVIPRHPEPEFPPRADGYWFAYIVKSTKQTNVEICVDLQGIGVSEVKAAWVKIHYIAYGPHGRFLKTHHEFIPLKFPATGNTGVWRQAEGCQVLPIRTHLLTPLDIPLEVLNRYVMPHAQAGDIVAIGETPIAIIQGRLKDPAQLRPGWVATRVCQFFLPTSSLATACGMQALVEEVGALRVLLAFLGGAIAKVFGHKGGFYQLAGEQARLIDDVTGTLPPYDQFIVMGPVNPQAVVEDLAAKTGLGIAIVDVNDLGAVKVLAASQGVSPHFLTTALKKNPAGNADEQTPIVLIRPCGVSPSSTEGFLDKMH
>NZ_CP040671.1|WP_149819206.1|1242777_1243554_+|DUF1350-domain-containing-protein
MEWQEVRGSWLCLPQRPLGWIHFLGGAFVAAAPQLTYRRLLEHLAEAGYGIIATPFVNNFDHGAIALDVLNKLDYALDWLIYRRGYPAALPIYGLGHSMGCKLHLLINSLYDGDRAGNLFMAFNNYPASQSIPWIENLAPVGVEFSPSPTETEKLIQERYPVRRNLLIRFQEDDIDQTARLRSLLRAKFGDMVTALKLPGNHLTPLSQGLKWQVGAEFSPLDAVGQWIKQSFFPEMQILEECLLEWLNPLGTARRSRP
>NZ_CP040671.1|WP_149819208.1|1243602_1244844_+|tryptophan-synthase-subunit-beta
MTVAPSAALSAAARPDPRGRFGRFGGKYVPETLMPALSELEAAFAHYRQDPEFQAEFQQLLRDYVGRPSPLYFAERLSAHYAHDQAQPQIYLKREDLNHTGAHKINNALGQVLLAKRMGKQRIIAETGAGQHGVATATVCARFGLQCVIYMGVQDMERQRLNVLRMRLLGAEVTPVSAGTGTLKDATSEAIRDWVTNVETTHYILGSVAGPHPYPMLVREFHAVIGAETRRQCLEKWGGLPDILLACVGGGSNAMGLFHEFVEEPQVRLIGVEAAGQGVDTGHHAATLTKGEVGVLHGAMSYLLQDADGQVVEAHSISAGLDYPGVGPEHSYLKDIGRAEYYSVTDAEAVAACVRLTQLEGILPALETAHALAYLETLCPQLTGQPRIVINCSGRGDKDVETIGRYFEAQPTP
>NZ_CP040671.1|WP_149819210.1|1244845_1246234_-|asparagine--tRNA-ligase
MQQRIKDILHQGQVGDRVTVKGWVRTKRELKECTFVNVNDGSTLAGLQVVIPNTVAAATPAIKDLTTGAAAEFSGELVRSPGKNQTIELHAQQIHLWGSADPETYPLQKKRHSFEFLRTISHLRPRTNTLGAVMRVRNACATAIHQFFQERGFLWVHTPIITASDCEGAGELFTVTTLDLAQPPKTPEGNIDFSQDFFGRRAYLTVSGQLEAEIMATAFTNVYTFGPTFRAENSNTSRHLAEFWMVEPEMAFCDLMGDMELAEAFLQFVFRYVLDHCPEDMAFFQERIDNSVMATAEQMATQPFARLSYSEAIQVLEKSGRAFEFPVAWGLDLQSEHERYLAEEYCQRPVIVYDYPANIKAFYMRLNDDGKTVAAMDVLAPKIGEIIGGSQREERFEVLQEQIVRRGLDPAPYWWYLDLRRYGSVPHAGFGLGFERLVQFMTGMDNIRDVILFPRTPGNAEF
>NZ_CP040671.1|WP_149819212.1|1246245_1248642_-|endonuclease-MutS2
MVVLTSQVSALDKSLGRLEWPRLCYQLATFAATKRGMRQLQGGEILGGTQAASQVLLAQTTEVITLETVHQVRLDFSQVTDIEPALRRLDHGGCLQGMELLAIAHLLSAARQQRRQIEEHAQLNELQQLVAGVRTYPEVTQEIYRCITDQGQVSDRASPELAEIRQQQRQCRTQIQQQLQQILQQRASAIQEAVVTQRRDRYVLAVKATHKDQMPGIVHDLSASGATLYIEPRETIDLQNRLQQLTHQEAEAERAICQALSDQLATISDDLWYLLDVLTTLDMAVARAHYSLWLQGNPPQFVSDTRLHLKALRHPLLVWQEHHEQGQTVVPIDIELHPPTKVVTITGPNTGGKTATLKALGLAALMAKAGLYVPAAAPVELPWFTGIWADIGDEQSLTQNLSTFSSHICNIRDILTELEMTGGNTLVLLDEVGAGTDPSEGTALAIALLRYLAEHASLTFATTHYGELKALKYQDSRFENAAVEFDETTLAPTYRLLWGIPGQSNALAIAQRLGLYPSIIEDAKAFLSSDSNRINEMIMGLVAQRQAQEAKTTAAAALLRDTEALYQEIATKAQELRQRQQQLRQQQEEQVRSALHQAQQEIAKVIAQLQRANSPEQVQAAQTALAQIEKTYLPPPPPAEFMPQPGDRVRLPQWQQVGEVLSVSQQGDIVVQVGSVKFTVPPHAVESLKGEPVRTPSKPKSDPAQAPLPPPSRTPTPAPAIRTESRTLDLRGKRTHEAEPLLEEFLNRQQGTVWIIHGHGSGALRQFVHQFLEQHPSVQSYHLAPPEEGGRGVTIVQL
>NZ_CP040671.1|WP_149819215.1|1248710_1249670_-|FHA-domain-containing-protein
MDASANRPDTYVPHLQAPSRSGEQQWGFMRPSELILAAPTPRLLLHSIYMQRSIVLDQLPVWQIGRSKDCDIVLPDRWCSRHHLCIERQADHRYRLTDLKSMNGTFIGNNRIHAPHLLRHGDRISIGESELEYIDLRDAPSPHPYTNHSHGSNSQVTVLMTHSSRTQGEMWRELLNSQGISTIWATSHFELEKIIAHVESLNCKVSLLLLDLGMPKTNPYDFCRQYRQRYPEMNVILLSGLRTRVHESECKWAVNQGAMALFAGLPRENLFGDLTSITERLQTIAQAIEWTYFNPEALTSTLLKLQDAVDAEMSSGMVL
>NZ_CP040671.1|WP_149819216.1|1249865_1250342_+|DNA-starvation/stationary-phase-protection-protein
MSATTTLKEQVLTTLKREQANAVVLYLNYKKYHWLTYGPLFRELHLLFEEQGTEVFAMIDELAERSLMLDGQPVADPADYLKVATVTPSSGQLTVKQMIEEAIANHELIITEMHQDAEVATEAGDIGTADLYTRLVQTHQKHRWFLKEFLAKGDGLVS
>NZ_CP040671.1|WP_149819218.1|1250338_1250713_-|hypothetical-protein
MTQPLIASLMLSLSLGGAIAPLAIAQATNPEPVNIVELVRARNYARQAAERTNGGLSRYRAEQSMHGPVREAPYVRNADGSYTFRILGHRVSNGVPASLPSIETVVTVAADGRTTIDYNGPIRN
>NZ_CP040671.1|WP_149819220.1|1250794_1254190_-|EAL-domain-containing-protein
MTNPQFLRVVALLSLGVATAVFIEWVLAAITSHSPLLVGIDVFAAIALGLTALAITLMGSRGRDRELACLPQLCGLVLVLMGVAIAVAVFNAQEITAPWQALSLPAYTSLLRPVAFIGLGVALWGVRGERSWQVIFGQGGAITSACLLFLEVLAGLYQLPLSLSASALGQILACVLLGLLNLCLMQWHPSLGVMRYFSSQRIGGLLLRRLLPWSILGPLLIGWVIQWVHHDRLWLSERLAQEVQIISIIAFLVTLLVTEAQHLNQVEQERQSFWRAYTEMDEVFRNSLLLSPLPMALVAADGQLWLMNRAWQEQTGSSPEEIPTWEGWLDIAFPEAAQRQWAATEFQRCLITQARVEHGDVCIRTRANQERIWQMVSLPLQLPNGNQQFILLTAVDVTRQRQLTQQLAAQQTELEAQVIARTLDLHNVNGELQAAQEKLNQLLDRADAFVSEIRLFPDGSWCYEYLSQGHLRILGYSPLDFQEDPNLWRSRVPSEDWEAYHRPFREKLLQEGCAHTEYRFQHRDGHEVWISLNATAEPQGDGSYLITTVGVDVTQRKKAMLALVESETRFRQMADASPLMIWLADSKGTIEFANQTICRVLGASLDQILGWNWLDLVHPEDRERTEQAIRLAVEQQQSYEIEHRLRNGQGVYRWVLKQAAPRYAEDGTCIGYLGSCLDITNIKLAEEKLRQLACQDSLTNLPNRAFLTEKIDQLLAAYHRGDIPPFAVLFLDLDRFKVINDSLGHDAGDELLLEIAHRLRSSMRQQEIVGRLGGDEFIAILEHIEGLQQIYEYGDRLRRCISEPYVLKGTEVSVSVSIGIAIVNSRYRTAGELLRDADIAMYAAKAQGCNGMQLFESEHHQAVYTRLQREQEFRRALEQEQLALFYQPIVSLSQDSLVGFEVLVRWQHPENGWISPAEFLPLALGLGLATKLDQWVLQKAIFNLYQWQQTLGSRAADFTLSVNISSAFFNSGQMVPLLKHLLPLYGIRGQQVILEITEEVIMPDSRFAQEQLEALQALDIRCGIDDFGTGYSSLSRLSQLPLYTLKIDQSFVRDIETNFQNLEIVRAIISLARTLQLEVVAEGIEHLSQKQCLQALGCQRGQGFLFGEPLSEEQAHQLLQARITPCQTESK

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Crispr_ID: NZ_CP040671_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP040671_4

1241290-1241466

Orphan

Consensus_repeat	Method
GTGCTGGGATTCTTTCCCAGCCGAACAAATGGAAAC	CRISPRCasFinder

2 spacers

The CRISPR arrays of NZ_CP040671_4

>merge|NZ_CP040671|4|1241290-1241466|CRISPRCasFinder
GTGCTGGGGTTCTTTCCCAGCCAAACAAATGGAAACACGGATGCAGTTTAACGTCATGCTCAGGACAAGAGTGCTGGGATTCTTTCCCAGCCGAACAAATGGAAACCCTGTGTGGAGTAAAGACATCTCTAGATCTCCAAAGTGCTGGGATTCTTTCCCAGCCGAACTAATGGAAAC

>NZ_CP040671|4|4|1241290-1241466|CRISPRCasFinder
GTGCTGGGGTTCTTTCCCAGCCAAACAAATGGAAAC	ACGGATGCAGTTTAACGTCATGCTCAGGACAAGA
GTGCTGGGATTCTTTCCCAGCCGAACAAATGGAAAC	CCTGTGTGGAGTAAAGACATCTCTAGATCTCCAAA
GTGCTGGGATTCTTTCCCAGCCGAACTAATGGAAAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP040671.1\|WP_149819215.1\|1248710_1249670_-\|FHA-domain-containing-protein	unknown	unknown	gnl\|CDD\|366133
NZ_CP040671.1\|WP_149819202.1\|1240796_1241288_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040671.1\|WP_149819218.1\|1250338_1250713_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040671.1\|WP_149819196.1\|1231103_1233035_-\|PBP1A-family-penicillin-binding-protein	unknown	unknown	gnl\|CDD\|273955
NZ_CP040671.1\|WP_149819190.1\|1228922_1229819_-\|LD-carboxypeptidase	unknown	unknown	gnl\|CDD\|224534
NZ_CP040671.1\|WP_149819188.1\|1227229_1228777_-\|NAD(P)H-quinone-oxidoreductase-subunit-N	unknown	unknown	gnl\|CDD\|235044
NZ_CP040671.1\|WP_149819208.1\|1243602_1244844_+\|tryptophan-synthase-subunit-beta	unknown	unknown	gnl\|CDD\|235288
NZ_CP040671.1\|WP_149819206.1\|1242777_1243554_+\|DUF1350-domain-containing-protein	unknown	unknown	gnl\|CDD\|115718
NZ_CP040671.1\|WP_149819192.1\|1229820_1230357_-\|DUF2808-domain-containing-protein	unknown	unknown	gnl\|CDD\|371328
NZ_CP040671.1\|WP_149821714.1\|1237550_1238273_+\|cytochrome-c-biogenesis-protein-CcdA	unknown	unknown	gnl\|CDD\|280792
NZ_CP040671.1\|WP_149819194.1\|1230360_1230918_-\|transcriptional-repressor	unknown	unknown	gnl\|CDD\|366663
NZ_CP040671.1\|WP_149819198.1\|1234469_1234799_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|369811
NZ_CP040671.1\|WP_149819222.1\|1254334_1254550_+\|DUF2555-domain-containing-protein	unknown	unknown	gnl\|CDD\|371217
NZ_CP040671.1\|WP_149819212.1\|1246245_1248642_-\|endonuclease-MutS2	unknown	unknown	gnl\|CDD\|234750
NZ_CP040671.1\|WP_149819210.1\|1244845_1246234_-\|asparagine--tRNA-ligase	unknown	unknown	gnl\|CDD\|235176
NZ_CP040671.1\|WP_149819216.1\|1249865_1250342_+\|DNA-starvation/stationary-phase-protection-protein	unknown	unknown	gnl\|CDD\|153102
NZ_CP040671.1\|WP_149819204.1\|1241481_1242705_-\|F420-0:Gamma-glutamyl-ligase	unknown	unknown	unknown
NZ_CP040671.1\|WP_149819200.1\|1234807_1237546_+\|insulinase-family-protein	unknown	unknown	gnl\|CDD\|223685
NZ_CP040671.1\|WP_149819220.1\|1250794_1254190_-\|EAL-domain-containing-protein	unknown	unknown	gnl\|CDD\|238923
NZ_CP040671.1\|WP_149821712.1\|1233185_1234412_+\|tyrosine--tRNA-ligase	unknown	unknown	gnl\|CDD\|235645

Protein	Function_ID	Function_description	E-value
NZ_CP040671.1\|WP_149819215.1\|1248710_1249670_-\|FHA-domain-containing-protein	gnl\|CDD\|366133	pfam00498, FHA, FHA domain. The FHA (Forkhead-associated) domain is a phosphopeptide binding motif.	3.81101e-22
NZ_CP040671.1\|WP_149819196.1\|1231103_1233035_-\|PBP1A-family-penicillin-binding-protein	gnl\|CDD\|273955	TIGR02074, Includes:_Penicillin-insensitive_transglycosylase, penicillin-binding protein, 1A family. Bacterial that synthesize a cell wall of peptidoglycan (murein) generally have several transglycosylases and transpeptidases for the task. This family consists of bifunctional transglycosylase/transpeptidase penicillin-binding proteins (PBP). In the Proteobacteria, this family includes PBP 1A but not the paralogous PBP 1B (TIGR02071). This family also includes related proteins, often designated PBP 1A, from other bacterial lineages. [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan].	0
NZ_CP040671.1\|WP_149819190.1\|1228922_1229819_-\|LD-carboxypeptidase	gnl\|CDD\|224534	COG1619, LdcA, Uncharacterized proteins, homologs of microcin C7 resistance protein MccF [Defense mechanisms].	2.42874e-98
NZ_CP040671.1\|WP_149819188.1\|1227229_1228777_-\|NAD(P)H-quinone-oxidoreductase-subunit-N	gnl\|CDD\|235044	PRK02504, PRK02504, NAD(P)H-quinone oxidoreductase subunit N.	0
NZ_CP040671.1\|WP_149819220.1\|1250794_1254190_-\|EAL-domain-containing-protein	gnl\|CDD\|238923	cd01948, EAL, EAL domain. This domain is found in diverse bacterial signaling proteins. It is called EAL after its conserved residues and is also known as domain of unknown function 2 (DUF2). The EAL domain has been shown to stimulate degradation of a second messenger, cyclic di-GMP, and is a good candidate for a diguanylate phosphodiesterase function. Together with the GGDEF domain, EAL might be involved in regulating cell surface adhesiveness in bacteria.	3.87951e-89
NZ_CP040671.1\|WP_149819208.1\|1243602_1244844_+\|tryptophan-synthase-subunit-beta	gnl\|CDD\|235288	PRK04346, PRK04346, tryptophan synthase subunit beta; Validated.	0
NZ_CP040671.1\|WP_149819192.1\|1229820_1230357_-\|DUF2808-domain-containing-protein	gnl\|CDD\|371328	pfam10989, DUF2808, Protein of unknown function (DUF2808). This family of proteins with unknown function appears to be restricted to Cyanobacteria.	9.79685e-38
NZ_CP040671.1\|WP_149821714.1\|1237550_1238273_+\|cytochrome-c-biogenesis-protein-CcdA	gnl\|CDD\|280792	pfam02683, DsbD, Cytochrome C biogenesis protein transmembrane region. This family consists of the transmembrane (i.e. non-catalytic) region of Cytochrome C biogenesis proteins also known as disulphide interchange proteins. These proteins posses a protein disulphide isomerase like domain that is not found within the aligned region of this family.	6.82915e-42
NZ_CP040671.1\|WP_149819194.1\|1230360_1230918_-\|transcriptional-repressor	gnl\|CDD\|366663	pfam01475, FUR, Ferric uptake regulator family. This family includes metal ion uptake regulator proteins, that bind to the operator DNA and controls transcription of metal ion-responsive genes. This family is also known as the FUR family.	4.80348e-49
NZ_CP040671.1\|WP_149819198.1\|1234469_1234799_+\|hypothetical-protein	gnl\|CDD\|369811	pfam08317, Spc7, Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.	0.00289765
NZ_CP040671.1\|WP_149819222.1\|1254334_1254550_+\|DUF2555-domain-containing-protein	gnl\|CDD\|371217	pfam10742, DUF2555, Protein of unknown function (DUF2555). This family is conserved in Cyanobacteria. The function is not known.	3.88405e-27
NZ_CP040671.1\|WP_149819212.1\|1246245_1248642_-\|endonuclease-MutS2	gnl\|CDD\|234750	PRK00409, PRK00409, recombination and DNA strand exchange inhibitor protein; Reviewed.	0
NZ_CP040671.1\|WP_149819210.1\|1244845_1246234_-\|asparagine--tRNA-ligase	gnl\|CDD\|235176	PRK03932, asnC, asparaginyl-tRNA synthetase; Validated.	0
NZ_CP040671.1\|WP_149819216.1\|1249865_1250342_+\|DNA-starvation/stationary-phase-protection-protein	gnl\|CDD\|153102	cd01043, DPS, DPS protein, ferritin-like diiron-binding domain. DPS (DNA Protecting protein under Starved conditions) domain is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins. Some DPS proteins nonspecifically bind DNA, protecting it from cleavage caused by reactive oxygen species such as the hydroxyl radicals produced during oxidation of Fe(II) by hydrogen peroxide. These proteins assemble into dodecameric structures, some form DPS-DNA co-crystalline complexes, and possess iron and H2O2 detoxification capabilities. Expression of DPS is induced by oxidative or nutritional stress, including metal ion starvation. Members of the DPS family are homopolymers formed by 12 four-helix bundle subunits that assemble with 23 symmetry into a hollow shell. The DPS ferroxidase site is unusual in that it is not located in a four-helix bundle as in ferritin, but is shared by 2-fold symmetry-related subunits providing the iron ligands. Many DPS sequences (e.g., E. coli) display an N-terminal extension of variable length that contains two or three positively charged lysine residues that extends into the solvent and is thought to play an important role in the stabilization of the complex with DNA. DPS Listeria Flp, Bacillus anthracis Dlp-1 and Dlp-2, and Helicobacter pylori HP-NAP which lack the N-terminal extension, do not bind DNA. DPS proteins from Helicobacter pylori, Treponema pallidum, and Borrelia burgdorferi are highly immunogenic.	2.27779e-47
NZ_CP040671.1\|WP_149819206.1\|1242777_1243554_+\|DUF1350-domain-containing-protein	gnl\|CDD\|115718	pfam07082, DUF1350, Protein of unknown function (DUF1350). This family consists of several hypothetical proteins from both cyanobacteria and plants. Members of this family are typically around 250 residues in length. The function of this family is unknown but the species distribution indicates that the family may be involved in photosynthesis.	1.06856e-160
NZ_CP040671.1\|WP_149819200.1\|1234807_1237546_+\|insulinase-family-protein	gnl\|CDD\|223685	COG0612, PqqL, Predicted Zn-dependent peptidases [General function prediction only].	1.50525e-99
NZ_CP040671.1\|WP_149821712.1\|1233185_1234412_+\|tyrosine--tRNA-ligase	gnl\|CDD\|235645	PRK05912, PRK05912, tyrosyl-tRNA synthetase; Validated.	0

>NZ_CP040671.1|WP_149819202.1|1240796_1241288_+|hypothetical-protein
MGILSEVLQRATASPPITLKTLATEVVVPLYSRYSGANLASYSRLDERFVQKMTFIPLGFFLPSSSKILYAILKDGKLPSDWAPSIQFSRDGTLIDKTGWSDIANMTSSAFRKLPRGLQGKIISLLQLQADKHVLLNYSESWQSLLWLPAEYQRLDVVDTAAD
>NZ_CP040671.1|WP_149821714.1|1237550_1238273_+|cytochrome-c-biogenesis-protein-CcdA
MASLTLQLYQLEQWANQWVSGQLSSLSVMSVGIIFLAGLLTSLTPCTLSMLPITVGYIAGYATKQNSSVLRQSLWFALGLATTLTLLGMIAAVAGRIYGQVGWGLTIVVSLVAIAMGLNLLNALPLSFPRSRFLEELPDRVPAGLQAYTLGATFGLVAAPCSTPVLATLLAWVATTQKLVVGAGLLLAYTTGYVAPLILVGVFSGALQKLLALRQWSSWITPVSGVLLIAFGVIALAIRL
>NZ_CP040671.1|WP_149819200.1|1234807_1237546_+|insulinase-family-protein
MTLGLVPRFVKILLFIGLMLLSTSLAVIFPLHTVEGLGSGVTKTVLDNGLTVLIKEIPTAPVVSLQVWYRVGSRHEPKGENGIAHQLEHLMFKGTKSRPVQFGQLFYALGSASNAFTSYDMTAYHHTVRADQLEPLLILEADRLRNILMTPEALESEKRVVISELQGYENSPEYRLSRAVMAALYPHHPYGLPVGGTASDVEQFTLPAVKSFYHQYYRPDNAVVVIAGDVRPPRALELVKKTFGQIPRPTDPLKSPSLPPPTAGQAQRICLTEPGSAPLLQILVPIPAMTHPDQAALDVLDMLLSGGRSSYLYQELMETGQASSAYSYVAALQAGGWFEIGAIAAPEQSLETIEQTIGQILHQLAEHPLSAAELQRAKQQLKANFILRNRDIDAQASQLANDETLTGDYRFSDRHLAAIEKVTAADVQRVVQTYFGRDRWIVGEFIPSEFADVELSGRPGAQTTAHNLVGEPVDPQTIAAYLPQGSGQAAPEVKNNGVETFTLKNGLRVLLLVDRSTPTITLAGRIDAGTAYDLLTQPGVAHLTAANLLNGTRRKNALTLAQTLEDRGISLEFSAFRDGVDIEGYALASELPTLLQTLGEVLQEATFPEPEFKLSQQRYLTALSLEADDPVRWGRRVLQETLYPANHPLHPFATPESVQAIQRPDLLNFYRAAYTPDHTILALVGDFDPVEVRSRLNEIFGSWQPQTDPLSLTFPAVSPPEQTLFKNAVIAGKSQAITYLGAPGIDRRDSRFYAAILMNHILGGDTLASRLGTEIRDRQGLTYGIYSFFSASRQAGPFIIQLQTAPEDTAKAIQATLQLLREARRQGFTAAELDAAKRSLSNTYIVELANVDVVARTLLGNASVGLPPAELQQFSDRLQAVTLEQVNQALRDLLDPERLVIVTAGPPVAFNL
>NZ_CP040671.1|WP_149819198.1|1234469_1234799_+|hypothetical-protein
MSEQEFQAKVLSELQALRVDVEKLGTDVEKLQTDVEKLQTDVHKLQGDVSELATQVKNQEYKFEVYQRGTDAMVRMATTIIIAAASVVVLASLSPAITALVSAIAHQGN
>NZ_CP040671.1|WP_149821712.1|1233185_1234412_+|tyrosine--tRNA-ligase
MSSDLEATIARLQRGVVETFPHVPDSTKPEENLWAYLRQTERPLRVKLGIDPTGSEIHLGHSIVLRKLRQFQDAGHCAVLIIGDFTAQIGDPTGKSEVRKQLSPEEVAANVQTYLEQVKPILDFETPGRLEIRYNSEWLAKLDLRKILELLGTMTVGQMLAKEGFAERYAKETPIFLHEFLYPLMQGYDSVAVAADVELGGTDQKFNIAVGRDLQRHFRLPTVQFGLLMPILVGTDGVQKMSKSLGNYVALTESAASMYSKLEKIPDALVNQYIELLTDLPLDSLPPNPRDRQKALALEVVSQYHGRDLALQTQAELAAIVTQGQTAQAGSIPEYSLGEFQFPVKLTYVLSHTKLCPSSSEARRQIQGGGVRLNGEKVTDVDFTLTAPEPYVNQVLQVGKKKFLRFVP
>NZ_CP040671.1|WP_149819196.1|1231103_1233035_-|PBP1A-family-penicillin-binding-protein
MSTTTLGKHPSQTRPQDENFWHGVLRIANRTFLVGMTFGCAAIGGGLLGLAISFRNLPDVRSLRGYIPSETTHIYDVKGTLLVSLHDEENREVVPLSEISPNLKLAVMAIEDSSFYQHRGINPIGISRALMVNLTSGRTVQGGSTLTMQLVKNLFLSQDRSISRKVAEAVLAMRLEQIFSKDEILEMYLNQVYWGHNTYGVQTAAQSYFKKNAADLTLAEAAMMAGIIQAPEAYSPFVDFDLAKERQQLVLDRMVELDWITPQEAAAAAQEPIKLGEITSFQRSRSPWITDAVLQELTRQFGREAVIRGGMRVQSSLDVKVQKMAEEAIQRGYQTLRGSGVRADQLALAAVDPRTHYVKALVGGVDYNRSQFNRATQAMRQPGSAFKPFVFYAAYASGKYTPDSGINDSPVRYRDGSGWYVPRNYDGSFMGGMSMRMALATSRNIPAIVLGQEVGIERVIEICRTLGITSPMLPVVSLPLGAVDLTPLEMAAAYATFANNGWQSPTTTIIQVTDNNGNLLLDHTPRPKLVLDPWAAAALNNTMQSVITSGTGTAANIGRPAAGKTGTTSSERDIWFVGYVPQLSAAVWAGNDNYAPLGQGATGGGFMAPIWRDFMSQALKDVPIEDFTPMSKFQRPKPQRQTN
>NZ_CP040671.1|WP_149819194.1|1230360_1230918_-|transcriptional-repressor
MQTNIGRSSESSMPLYTAAALKAELNEKGWRLTPQRETILNIFQNLPKGNHLSAEDLHHELRKQGHSISLSTVYRTVKLMSRMGILRELELAEGHKHYELNTMSPHHHHHMVCVQCNRTMEFDNDTILKQALKQTEKYGLQLIDCQLTIYTICPEALRRGYPGLPENWVCSSAIAHGTEPPSRGK
>NZ_CP040671.1|WP_149819192.1|1229820_1230357_-|DUF2808-domain-containing-protein
MRRLFAIALVGIAALTPQSLGVEFPDGRVAFDQPPIFVEANTRYPQVWLTNTTYNFIVQIPTTAGEPLARLDIQQLPGIETIYFLPQRTRAFIGDRSHQPIPLAEVTFDGHSALLRVTFDPPVPPGSYLRVEVAPVRNPQWDGTYLFAVTAFPRGGDRAMGQNIGTGRLQFYRNSNFF
>NZ_CP040671.1|WP_149819190.1|1228922_1229819_-|LD-carboxypeptidase
MTVFATLPPPLQPGDRLAVAFPSGVLRQREPFWQGVACWQAQGYEVIVDEAAFAGWGYLAGADQQRRDRLRHLLQDNSIKGILCGRGGFGATRLLEQWQWPAVSPKWLIGFSDITALLWSYANQGVAGVHGPVLTTLAAEPLWSQQRLFDLVRGKPLEPLLGTGWGGGVVQGRLLVGNLTVATHLLGTPDCPSFENVILALEDVGEAPYRIDRMLTQWRCSGVLHQIQGIVLGRFSRCEDPTTQPNFRLIEVLQDRLGDLGLPIVSDLPFGHEGVNAALPVGVAAELDGDRGSLRLLL
>NZ_CP040671.1|WP_149819188.1|1227229_1228777_-|NAD(P)H-quinone-oxidoreductase-subunit-N
MDLVTLAGQLNAGTILPETIVIVTLLVVLLADLIQGRQADRWTPYFAIVGLGGAIATMIPLWTQPDTVSFFGSFISDHLSLFFRGLIALSALGTILMSIRYVEQTGSSLGEFMTILLTATVGGMFIAGAQELVFIFVALETLSIASYLLTGYTKRDSRSNEAALKYLLIGAASSAIFLYGSSLLYGLSGGYTQLPEIAQALSAESLGLVVALVFVIAGISFKISAVPFHQWTPDVYEGAPTPVVAFLSVGSKAAGFALAIRFLTLAFPSVTDQWQLIFTVLAILSMILGNVVALAQTSMKRMLAYSSIGQAGFVMIGFVVGTEAGYASMLFYLLVYLFMNLGAFTCVILFSLRTGTDQISEYAGLYQKDPLLTLGLSLCLLSLGGIPPLAGFFGKIYLFWAGWQAGAYGLVLLGLLTSVISIYYYIRVVKMMVVKEPQEMSLAVQNYPEISWSTFGMRPLQVGLVMTVIATSLAGILANPLFNLVNTAVLDVPQVAHQPTAIEVAYQNLPPAGKS
>NZ_CP040671.1|WP_149819204.1|1241481_1242705_-|F420-0:Gamma-glutamyl-ligase
MMIATVIGIGAAALGFLALLVAIGLEGRYRQRPAHPLEVIRATWNLEIYEPTHYRFVGLLGLSNPHRGLEVMVPDLRAEVVLLSDGRVDMIQTDVQVIPRHPEPEFPPRADGYWFAYIVKSTKQTNVEICVDLQGIGVSEVKAAWVKIHYIAYGPHGRFLKTHHEFIPLKFPATGNTGVWRQAEGCQVLPIRTHLLTPLDIPLEVLNRYVMPHAQAGDIVAIGETPIAIIQGRLKDPAQLRPGWVATRVCQFFLPTSSLATACGMQALVEEVGALRVLLAFLGGAIAKVFGHKGGFYQLAGEQARLIDDVTGTLPPYDQFIVMGPVNPQAVVEDLAAKTGLGIAIVDVNDLGAVKVLAASQGVSPHFLTTALKKNPAGNADEQTPIVLIRPCGVSPSSTEGFLDKMH
>NZ_CP040671.1|WP_149819206.1|1242777_1243554_+|DUF1350-domain-containing-protein
MEWQEVRGSWLCLPQRPLGWIHFLGGAFVAAAPQLTYRRLLEHLAEAGYGIIATPFVNNFDHGAIALDVLNKLDYALDWLIYRRGYPAALPIYGLGHSMGCKLHLLINSLYDGDRAGNLFMAFNNYPASQSIPWIENLAPVGVEFSPSPTETEKLIQERYPVRRNLLIRFQEDDIDQTARLRSLLRAKFGDMVTALKLPGNHLTPLSQGLKWQVGAEFSPLDAVGQWIKQSFFPEMQILEECLLEWLNPLGTARRSRP
>NZ_CP040671.1|WP_149819208.1|1243602_1244844_+|tryptophan-synthase-subunit-beta
MTVAPSAALSAAARPDPRGRFGRFGGKYVPETLMPALSELEAAFAHYRQDPEFQAEFQQLLRDYVGRPSPLYFAERLSAHYAHDQAQPQIYLKREDLNHTGAHKINNALGQVLLAKRMGKQRIIAETGAGQHGVATATVCARFGLQCVIYMGVQDMERQRLNVLRMRLLGAEVTPVSAGTGTLKDATSEAIRDWVTNVETTHYILGSVAGPHPYPMLVREFHAVIGAETRRQCLEKWGGLPDILLACVGGGSNAMGLFHEFVEEPQVRLIGVEAAGQGVDTGHHAATLTKGEVGVLHGAMSYLLQDADGQVVEAHSISAGLDYPGVGPEHSYLKDIGRAEYYSVTDAEAVAACVRLTQLEGILPALETAHALAYLETLCPQLTGQPRIVINCSGRGDKDVETIGRYFEAQPTP
>NZ_CP040671.1|WP_149819210.1|1244845_1246234_-|asparagine--tRNA-ligase
MQQRIKDILHQGQVGDRVTVKGWVRTKRELKECTFVNVNDGSTLAGLQVVIPNTVAAATPAIKDLTTGAAAEFSGELVRSPGKNQTIELHAQQIHLWGSADPETYPLQKKRHSFEFLRTISHLRPRTNTLGAVMRVRNACATAIHQFFQERGFLWVHTPIITASDCEGAGELFTVTTLDLAQPPKTPEGNIDFSQDFFGRRAYLTVSGQLEAEIMATAFTNVYTFGPTFRAENSNTSRHLAEFWMVEPEMAFCDLMGDMELAEAFLQFVFRYVLDHCPEDMAFFQERIDNSVMATAEQMATQPFARLSYSEAIQVLEKSGRAFEFPVAWGLDLQSEHERYLAEEYCQRPVIVYDYPANIKAFYMRLNDDGKTVAAMDVLAPKIGEIIGGSQREERFEVLQEQIVRRGLDPAPYWWYLDLRRYGSVPHAGFGLGFERLVQFMTGMDNIRDVILFPRTPGNAEF
>NZ_CP040671.1|WP_149819212.1|1246245_1248642_-|endonuclease-MutS2
MVVLTSQVSALDKSLGRLEWPRLCYQLATFAATKRGMRQLQGGEILGGTQAASQVLLAQTTEVITLETVHQVRLDFSQVTDIEPALRRLDHGGCLQGMELLAIAHLLSAARQQRRQIEEHAQLNELQQLVAGVRTYPEVTQEIYRCITDQGQVSDRASPELAEIRQQQRQCRTQIQQQLQQILQQRASAIQEAVVTQRRDRYVLAVKATHKDQMPGIVHDLSASGATLYIEPRETIDLQNRLQQLTHQEAEAERAICQALSDQLATISDDLWYLLDVLTTLDMAVARAHYSLWLQGNPPQFVSDTRLHLKALRHPLLVWQEHHEQGQTVVPIDIELHPPTKVVTITGPNTGGKTATLKALGLAALMAKAGLYVPAAAPVELPWFTGIWADIGDEQSLTQNLSTFSSHICNIRDILTELEMTGGNTLVLLDEVGAGTDPSEGTALAIALLRYLAEHASLTFATTHYGELKALKYQDSRFENAAVEFDETTLAPTYRLLWGIPGQSNALAIAQRLGLYPSIIEDAKAFLSSDSNRINEMIMGLVAQRQAQEAKTTAAAALLRDTEALYQEIATKAQELRQRQQQLRQQQEEQVRSALHQAQQEIAKVIAQLQRANSPEQVQAAQTALAQIEKTYLPPPPPAEFMPQPGDRVRLPQWQQVGEVLSVSQQGDIVVQVGSVKFTVPPHAVESLKGEPVRTPSKPKSDPAQAPLPPPSRTPTPAPAIRTESRTLDLRGKRTHEAEPLLEEFLNRQQGTVWIIHGHGSGALRQFVHQFLEQHPSVQSYHLAPPEEGGRGVTIVQL
>NZ_CP040671.1|WP_149819215.1|1248710_1249670_-|FHA-domain-containing-protein
MDASANRPDTYVPHLQAPSRSGEQQWGFMRPSELILAAPTPRLLLHSIYMQRSIVLDQLPVWQIGRSKDCDIVLPDRWCSRHHLCIERQADHRYRLTDLKSMNGTFIGNNRIHAPHLLRHGDRISIGESELEYIDLRDAPSPHPYTNHSHGSNSQVTVLMTHSSRTQGEMWRELLNSQGISTIWATSHFELEKIIAHVESLNCKVSLLLLDLGMPKTNPYDFCRQYRQRYPEMNVILLSGLRTRVHESECKWAVNQGAMALFAGLPRENLFGDLTSITERLQTIAQAIEWTYFNPEALTSTLLKLQDAVDAEMSSGMVL
>NZ_CP040671.1|WP_149819216.1|1249865_1250342_+|DNA-starvation/stationary-phase-protection-protein
MSATTTLKEQVLTTLKREQANAVVLYLNYKKYHWLTYGPLFRELHLLFEEQGTEVFAMIDELAERSLMLDGQPVADPADYLKVATVTPSSGQLTVKQMIEEAIANHELIITEMHQDAEVATEAGDIGTADLYTRLVQTHQKHRWFLKEFLAKGDGLVS
>NZ_CP040671.1|WP_149819218.1|1250338_1250713_-|hypothetical-protein
MTQPLIASLMLSLSLGGAIAPLAIAQATNPEPVNIVELVRARNYARQAAERTNGGLSRYRAEQSMHGPVREAPYVRNADGSYTFRILGHRVSNGVPASLPSIETVVTVAADGRTTIDYNGPIRN
>NZ_CP040671.1|WP_149819220.1|1250794_1254190_-|EAL-domain-containing-protein
MTNPQFLRVVALLSLGVATAVFIEWVLAAITSHSPLLVGIDVFAAIALGLTALAITLMGSRGRDRELACLPQLCGLVLVLMGVAIAVAVFNAQEITAPWQALSLPAYTSLLRPVAFIGLGVALWGVRGERSWQVIFGQGGAITSACLLFLEVLAGLYQLPLSLSASALGQILACVLLGLLNLCLMQWHPSLGVMRYFSSQRIGGLLLRRLLPWSILGPLLIGWVIQWVHHDRLWLSERLAQEVQIISIIAFLVTLLVTEAQHLNQVEQERQSFWRAYTEMDEVFRNSLLLSPLPMALVAADGQLWLMNRAWQEQTGSSPEEIPTWEGWLDIAFPEAAQRQWAATEFQRCLITQARVEHGDVCIRTRANQERIWQMVSLPLQLPNGNQQFILLTAVDVTRQRQLTQQLAAQQTELEAQVIARTLDLHNVNGELQAAQEKLNQLLDRADAFVSEIRLFPDGSWCYEYLSQGHLRILGYSPLDFQEDPNLWRSRVPSEDWEAYHRPFREKLLQEGCAHTEYRFQHRDGHEVWISLNATAEPQGDGSYLITTVGVDVTQRKKAMLALVESETRFRQMADASPLMIWLADSKGTIEFANQTICRVLGASLDQILGWNWLDLVHPEDRERTEQAIRLAVEQQQSYEIEHRLRNGQGVYRWVLKQAAPRYAEDGTCIGYLGSCLDITNIKLAEEKLRQLACQDSLTNLPNRAFLTEKIDQLLAAYHRGDIPPFAVLFLDLDRFKVINDSLGHDAGDELLLEIAHRLRSSMRQQEIVGRLGGDEFIAILEHIEGLQQIYEYGDRLRRCISEPYVLKGTEVSVSVSIGIAIVNSRYRTAGELLRDADIAMYAAKAQGCNGMQLFESEHHQAVYTRLQREQEFRRALEQEQLALFYQPIVSLSQDSLVGFEVLVRWQHPENGWISPAEFLPLALGLGLATKLDQWVLQKAIFNLYQWQQTLGSRAADFTLSVNISSAFFNSGQMVPLLKHLLPLYGIRGQQVILEITEEVIMPDSRFAQEQLEALQALDIRCGIDDFGTGYSSLSRLSQLPLYTLKIDQSFVRDIETNFQNLEIVRAIISLARTLQLEVVAEGIEHLSQKQCLQALGCQRGQGFLFGEPLSEEQAHQLLQARITPCQTESK
>NZ_CP040671.1|WP_149819222.1|1254334_1254550_+|DUF2555-domain-containing-protein
MQTTHHYTQEYINHLTPQEVAALARRLEEDDYDTPFAALEDWHLLRAIAFQRPELVEPYLYLLDLEAFDES

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Crispr_ID: NZ_CP040671_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP040671_5

1930020-1931927

Orphan

I-A,I-B,II-B

Consensus_repeat	Method
GTGCTCAACGCCTTACGGCATCAAAGGTAGAGGCAC	PILER-CR
GTGCCTCTACCTTTGATGCCGTAAGGCGTTGAGCAC	CRISPRCasFinder
GTGCCTCTACCTTTGATGCCGTAAGGCGTTGAGCAC	CRT

26 spacers

The CRISPR arrays of NZ_CP040671_5

>merge|NZ_CP040671|5|1930020-1931927|PILER-CR,CRISPRCasFinder,CRT
GTGCCTCTACCTTTGATGCCGTAAGGCGTTGAGCACATTCTGGGATCCTTATTTTCGGTCCCAAACCGAAGGAGTGCCTCTACCTTTGATGCCGTAAGGCGTTGAGCACTCACTGATCAGGGCGAGGAGACCGCCCTTGCGGCTGTGCCTCTACCTTTGATGCCGTAAGGCGTTGAGCACTCATCGTGCATGAACTTATGCACATTTTACTTTCTGTGCCTCTACCTTTGATGCCGTAAGGCGTTGAGCACGTCTACCACCTAACGGTAGCGTCAAGCCTTCTCTAGTGCCTCTACCTTTGATGCCGTAAGGCGTTGAGCACGAAAATATTGGGTTGGTGAATCTAACGGCCACTCTTGAGTGCCTCTACCTTTGATGCCGTAAGGCGTTGAGCACTTTCGCCCACATCGAAAATGATATAGTTACAATACTTGTGCCTCTACCTTTGATGCCGTAAGGCGTTGAGCACGTATGGGAAACAAATTATGAAATCTACACTAGGTGGGTGCCTCTACCTTTGATGCCGTAAGGCGTTGAGCACGCTTCTTGGGATGCCTAGCGGTTCTCTAGTTTACCTAGGTGCCTCTACCTTTGATGCCGTAAGGCGTTGAGCACGTAGGCATACATTGACTTTATCTGGCTCTCCAACGTGCCTCTACCTTTGATGCCGTAAGGCGTTGAGCACTTCGGTAAACAACCGAACAACTTGGCAGTCGTCAAAACGTGCCTCTACCTTTGATGCCGTAAGGCGTTGAGCACCCCAACCACCCGTTCAACCACCTGCTCAGCCACCCGTGTGCCTCTACCTTTGATGCCGTAAGGCGTTGAGCACCAGACGGAAGAGAAAGATGCATAAGCATTATTGGTGGGTGCCTCTACCTTTGATGCCGTAAGGCGTTGAGCACAGAGGGGTAGAAGGCTTTTAGGATGCTAACAATAGTGCCTCTACCTTTGATGCCGTAAGGCGTTGAGCACAAGCTGTTGAAGAAATTGCAAAAAAAGTACGTGAATGTGCCTCTACCTTTGATGCCGTAAGGCGTTGAGCACGCCTGTTGACGTTGCTCTTTTGTTACTTCCTCATGTGCCTCTACCTTTGATGCCGTAAGGCGTTGAGCACACCGCCTTGGTTATCAGAAGTAACAAAAGCGGGTTTGTGCCTCTACCTTTGATGCCGTAAGGCGTTGAGCACATTGCGCAATTGTAAAAAGTTCTGCCACTTTGTACGTGCCTCTACCTTTGATGCCGTAAGGCGTTGAGCACGATACAGTTGGATATACCGAATTGCCGAATAACAAGTGCCTCTACCTTTGATGCCGTAAGGCGTTGAGCACGTAGTAATCCGCAAACGGCAGATTAATTTGAGCCCGCAAGTGCCTCTACCTTTGATGCCGTAAGGCGTTGAGCACCAAACTTCTAAGTCCATTCAAGAAGCAGTCGTTTGGGTGCCTCTACCTTTGATGCCGTAAGGCGTTGAGCACACTGTAATTGCGCTAATTCACTACGATAACGCTCCAGTGCCTCTACCTTTGATGCCGTAAGGCGTTGAGCACAAAAACCTTTCGCCTAAAAAGTTTTTTGGTTTTTTTGTGCCTCTACCTTTGATGCCGTAAGGCGTTGAGCACTTAGCTAACAAAACAAAGAGCTCTCCTGTGTAATAGTGCCTCTACCTTTGATGCCGTAAGGCGTTGAGCACCTGCGGGGAAATACCAGTTCCTGTCGTCGACTTGGGTGCCTCTACCTTTGATGCCGTAAGGCGTTGAGCACAGTGATGATTACTTTCTTCGGCCTTAGGCTCAGGAAGTGCCTCTACCTTTGATGCCGTAAGGCGTTGAGCACCTTCAAAAATATCAACTTTGTTTTCGGAATTAACTAGTGCCTCTACCTTTGATGCCGTAAGGCGTTGAGCAC

>NZ_CP040671|5|5|1930020-1931927|PILER-CR
GTGCCTCTACCTTTGATGCCGTAAGGCGTTGAGCAC	ATTCTGGGATCCTTATTTTCGGTCCCAAACCGAAGGA
GTGCCTCTACCTTTGATGCCGTAAGGCGTTGAGCAC	TCACTGATCAGGGCGAGGAGACCGCCCTTGCGGCT
GTGCCTCTACCTTTGATGCCGTAAGGCGTTGAGCAC	TCATCGTGCATGAACTTATGCACATTTTACTTTCT
GTGCCTCTACCTTTGATGCCGTAAGGCGTTGAGCAC	GTCTACCACCTAACGGTAGCGTCAAGCCTTCTCTA
GTGCCTCTACCTTTGATGCCGTAAGGCGTTGAGCAC	GAAAATATTGGGTTGGTGAATCTAACGGCCACTCTTGA
GTGCCTCTACCTTTGATGCCGTAAGGCGTTGAGCAC	TTTCGCCCACATCGAAAATGATATAGTTACAATACTT
GTGCCTCTACCTTTGATGCCGTAAGGCGTTGAGCAC	GTATGGGAAACAAATTATGAAATCTACACTAGGTGG
GTGCCTCTACCTTTGATGCCGTAAGGCGTTGAGCAC	GCTTCTTGGGATGCCTAGCGGTTCTCTAGTTTACCTAG
GTGCCTCTACCTTTGATGCCGTAAGGCGTTGAGCAC	GTAGGCATACATTGACTTTATCTGGCTCTCCAAC
GTGCCTCTACCTTTGATGCCGTAAGGCGTTGAGCAC	TTCGGTAAACAACCGAACAACTTGGCAGTCGTCAAAAC
GTGCCTCTACCTTTGATGCCGTAAGGCGTTGAGCAC	CCCAACCACCCGTTCAACCACCTGCTCAGCCACCCGT
GTGCCTCTACCTTTGATGCCGTAAGGCGTTGAGCAC	CAGACGGAAGAGAAAGATGCATAAGCATTATTGGTGG
GTGCCTCTACCTTTGATGCCGTAAGGCGTTGAGCAC	AGAGGGGTAGAAGGCTTTTAGGATGCTAACAATA
GTGCCTCTACCTTTGATGCCGTAAGGCGTTGAGCAC	AAGCTGTTGAAGAAATTGCAAAAAAAGTACGTGAAT
GTGCCTCTACCTTTGATGCCGTAAGGCGTTGAGCAC	GCCTGTTGACGTTGCTCTTTTGTTACTTCCTCAT
GTGCCTCTACCTTTGATGCCGTAAGGCGTTGAGCAC	ACCGCCTTGGTTATCAGAAGTAACAAAAGCGGGTTT
GTGCCTCTACCTTTGATGCCGTAAGGCGTTGAGCAC	ATTGCGCAATTGTAAAAAGTTCTGCCACTTTGTAC
GTGCCTCTACCTTTGATGCCGTAAGGCGTTGAGCAC	GATACAGTTGGATATACCGAATTGCCGAATAACAA
GTGCCTCTACCTTTGATGCCGTAAGGCGTTGAGCAC	GTAGTAATCCGCAAACGGCAGATTAATTTGAGCCCGCAA
GTGCCTCTACCTTTGATGCCGTAAGGCGTTGAGCAC	CAAACTTCTAAGTCCATTCAAGAAGCAGTCGTTTGG
GTGCCTCTACCTTTGATGCCGTAAGGCGTTGAGCAC	ACTGTAATTGCGCTAATTCACTACGATAACGCTCCA
GTGCCTCTACCTTTGATGCCGTAAGGCGTTGAGCAC	AAAAACCTTTCGCCTAAAAAGTTTTTTGGTTTTTTT
GTGCCTCTACCTTTGATGCCGTAAGGCGTTGAGCAC	TTAGCTAACAAAACAAAGAGCTCTCCTGTGTAATA
GTGCCTCTACCTTTGATGCCGTAAGGCGTTGAGCAC	CTGCGGGGAAATACCAGTTCCTGTCGTCGACTTGG
GTGCCTCTACCTTTGATGCCGTAAGGCGTTGAGCAC	AGTGATGATTACTTTCTTCGGCCTTAGGCTCAGGAA
GTGCCTCTACCTTTGATGCCGTAAGGCGTTGAGCAC	CTTCAAAAATATCAACTTTGTTTTCGGAATTAACTA
GTGCCTCTACCTTTGATGCCGTAAGGCGTTGAGCAC

>NZ_CP040671|5|5|1930020-1931927|CRISPRCasFinder
GTGCCTCTACCTTTGATGCCGTAAGGCGTTGAGCAC	ATTCTGGGATCCTTATTTTCGGTCCCAAACCGAAGGA
GTGCCTCTACCTTTGATGCCGTAAGGCGTTGAGCAC	TCACTGATCAGGGCGAGGAGACCGCCCTTGCGGCT
GTGCCTCTACCTTTGATGCCGTAAGGCGTTGAGCAC	TCATCGTGCATGAACTTATGCACATTTTACTTTCT
GTGCCTCTACCTTTGATGCCGTAAGGCGTTGAGCAC	GTCTACCACCTAACGGTAGCGTCAAGCCTTCTCTA
GTGCCTCTACCTTTGATGCCGTAAGGCGTTGAGCAC	GAAAATATTGGGTTGGTGAATCTAACGGCCACTCTTGA
GTGCCTCTACCTTTGATGCCGTAAGGCGTTGAGCAC	TTTCGCCCACATCGAAAATGATATAGTTACAATACTT
GTGCCTCTACCTTTGATGCCGTAAGGCGTTGAGCAC	GTATGGGAAACAAATTATGAAATCTACACTAGGTGG
GTGCCTCTACCTTTGATGCCGTAAGGCGTTGAGCAC	GCTTCTTGGGATGCCTAGCGGTTCTCTAGTTTACCTAG
GTGCCTCTACCTTTGATGCCGTAAGGCGTTGAGCAC	GTAGGCATACATTGACTTTATCTGGCTCTCCAAC
GTGCCTCTACCTTTGATGCCGTAAGGCGTTGAGCAC	TTCGGTAAACAACCGAACAACTTGGCAGTCGTCAAAAC
GTGCCTCTACCTTTGATGCCGTAAGGCGTTGAGCAC	CCCAACCACCCGTTCAACCACCTGCTCAGCCACCCGT
GTGCCTCTACCTTTGATGCCGTAAGGCGTTGAGCAC	CAGACGGAAGAGAAAGATGCATAAGCATTATTGGTGG
GTGCCTCTACCTTTGATGCCGTAAGGCGTTGAGCAC	AGAGGGGTAGAAGGCTTTTAGGATGCTAACAATA
GTGCCTCTACCTTTGATGCCGTAAGGCGTTGAGCAC	AAGCTGTTGAAGAAATTGCAAAAAAAGTACGTGAAT
GTGCCTCTACCTTTGATGCCGTAAGGCGTTGAGCAC	GCCTGTTGACGTTGCTCTTTTGTTACTTCCTCAT
GTGCCTCTACCTTTGATGCCGTAAGGCGTTGAGCAC	ACCGCCTTGGTTATCAGAAGTAACAAAAGCGGGTTT
GTGCCTCTACCTTTGATGCCGTAAGGCGTTGAGCAC	ATTGCGCAATTGTAAAAAGTTCTGCCACTTTGTAC
GTGCCTCTACCTTTGATGCCGTAAGGCGTTGAGCAC	GATACAGTTGGATATACCGAATTGCCGAATAACAA
GTGCCTCTACCTTTGATGCCGTAAGGCGTTGAGCAC	GTAGTAATCCGCAAACGGCAGATTAATTTGAGCCCGCAA
GTGCCTCTACCTTTGATGCCGTAAGGCGTTGAGCAC	CAAACTTCTAAGTCCATTCAAGAAGCAGTCGTTTGG
GTGCCTCTACCTTTGATGCCGTAAGGCGTTGAGCAC	ACTGTAATTGCGCTAATTCACTACGATAACGCTCCA
GTGCCTCTACCTTTGATGCCGTAAGGCGTTGAGCAC	AAAAACCTTTCGCCTAAAAAGTTTTTTGGTTTTTTT
GTGCCTCTACCTTTGATGCCGTAAGGCGTTGAGCAC	TTAGCTAACAAAACAAAGAGCTCTCCTGTGTAATA
GTGCCTCTACCTTTGATGCCGTAAGGCGTTGAGCAC	CTGCGGGGAAATACCAGTTCCTGTCGTCGACTTGG
GTGCCTCTACCTTTGATGCCGTAAGGCGTTGAGCAC	AGTGATGATTACTTTCTTCGGCCTTAGGCTCAGGAA
GTGCCTCTACCTTTGATGCCGTAAGGCGTTGAGCAC	CTTCAAAAATATCAACTTTGTTTTCGGAATTAACTA
GTGCCTCTACCTTTGATGCCGTAAGGCGTTGAGCAC

>NZ_CP040671|5|4|1930020-1931927|CRT
GTGCCTCTACCTTTGATGCCGTAAGGCGTTGAGCAC	ATTCTGGGATCCTTATTTTCGGTCCCAAACCGAAGGA
GTGCCTCTACCTTTGATGCCGTAAGGCGTTGAGCAC	TCACTGATCAGGGCGAGGAGACCGCCCTTGCGGCT
GTGCCTCTACCTTTGATGCCGTAAGGCGTTGAGCAC	TCATCGTGCATGAACTTATGCACATTTTACTTTCT
GTGCCTCTACCTTTGATGCCGTAAGGCGTTGAGCAC	GTCTACCACCTAACGGTAGCGTCAAGCCTTCTCTA
GTGCCTCTACCTTTGATGCCGTAAGGCGTTGAGCAC	GAAAATATTGGGTTGGTGAATCTAACGGCCACTCTTGA
GTGCCTCTACCTTTGATGCCGTAAGGCGTTGAGCAC	TTTCGCCCACATCGAAAATGATATAGTTACAATACTT
GTGCCTCTACCTTTGATGCCGTAAGGCGTTGAGCAC	GTATGGGAAACAAATTATGAAATCTACACTAGGTGG
GTGCCTCTACCTTTGATGCCGTAAGGCGTTGAGCAC	GCTTCTTGGGATGCCTAGCGGTTCTCTAGTTTACCTAG
GTGCCTCTACCTTTGATGCCGTAAGGCGTTGAGCAC	GTAGGCATACATTGACTTTATCTGGCTCTCCAAC
GTGCCTCTACCTTTGATGCCGTAAGGCGTTGAGCAC	TTCGGTAAACAACCGAACAACTTGGCAGTCGTCAAAAC
GTGCCTCTACCTTTGATGCCGTAAGGCGTTGAGCAC	CCCAACCACCCGTTCAACCACCTGCTCAGCCACCCGT
GTGCCTCTACCTTTGATGCCGTAAGGCGTTGAGCAC	CAGACGGAAGAGAAAGATGCATAAGCATTATTGGTGG
GTGCCTCTACCTTTGATGCCGTAAGGCGTTGAGCAC	AGAGGGGTAGAAGGCTTTTAGGATGCTAACAATA
GTGCCTCTACCTTTGATGCCGTAAGGCGTTGAGCAC	AAGCTGTTGAAGAAATTGCAAAAAAAGTACGTGAAT
GTGCCTCTACCTTTGATGCCGTAAGGCGTTGAGCAC	GCCTGTTGACGTTGCTCTTTTGTTACTTCCTCAT
GTGCCTCTACCTTTGATGCCGTAAGGCGTTGAGCAC	ACCGCCTTGGTTATCAGAAGTAACAAAAGCGGGTTT
GTGCCTCTACCTTTGATGCCGTAAGGCGTTGAGCAC	ATTGCGCAATTGTAAAAAGTTCTGCCACTTTGTAC
GTGCCTCTACCTTTGATGCCGTAAGGCGTTGAGCAC	GATACAGTTGGATATACCGAATTGCCGAATAACAA
GTGCCTCTACCTTTGATGCCGTAAGGCGTTGAGCAC	GTAGTAATCCGCAAACGGCAGATTAATTTGAGCCCGCAA
GTGCCTCTACCTTTGATGCCGTAAGGCGTTGAGCAC	CAAACTTCTAAGTCCATTCAAGAAGCAGTCGTTTGG
GTGCCTCTACCTTTGATGCCGTAAGGCGTTGAGCAC	ACTGTAATTGCGCTAATTCACTACGATAACGCTCCA
GTGCCTCTACCTTTGATGCCGTAAGGCGTTGAGCAC	AAAAACCTTTCGCCTAAAAAGTTTTTTGGTTTTTTT
GTGCCTCTACCTTTGATGCCGTAAGGCGTTGAGCAC	TTAGCTAACAAAACAAAGAGCTCTCCTGTGTAATA
GTGCCTCTACCTTTGATGCCGTAAGGCGTTGAGCAC	CTGCGGGGAAATACCAGTTCCTGTCGTCGACTTGG
GTGCCTCTACCTTTGATGCCGTAAGGCGTTGAGCAC	AGTGATGATTACTTTCTTCGGCCTTAGGCTCAGGAA
GTGCCTCTACCTTTGATGCCGTAAGGCGTTGAGCAC	CTTCAAAAATATCAACTTTGTTTTCGGAATTAACTA
GTGCCTCTACCTTTGATGCCGTAAGGCGTTGAGCAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP040671.1\|WP_149820329.1\|1943168_1943690_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040671.1\|WP_149820305.1\|1921424_1922504_+\|P-loop-NTPase	unknown	unknown	gnl\|CDD\|378455
NZ_CP040671.1\|WP_149821792.1\|1933114_1933336_-\|DUF3148-domain-containing-protein	unknown	unknown	gnl\|CDD\|371482
NZ_CP040671.1\|WP_149820321.1\|1935355_1936366_+\|ADP-ribosylglycohydrolase-family-protein	unknown	unknown	gnl\|CDD\|377122
NZ_CP040671.1\|WP_149821794.1\|1936409_1939943_-\|methionine-synthase	unknown	unknown	gnl\|CDD\|273959
NZ_CP040671.1\|WP_149820311.1\|1925890_1926619_+\|response-regulator	unknown	unknown	gnl\|CDD\|223816
NZ_CP040671.1\|WP_149820309.1\|1922973_1923729_-\|serine/threonine-protein-phosphatase	unknown	unknown	gnl\|CDD\|277316
NZ_CP040671.1\|WP_149820314.1\|1926615_1928487_-\|NYN-domain-containing-protein	unknown	unknown	gnl\|CDD\|350237
NZ_CP040671.1\|WP_149820331.1\|1943689_1944322_-\|UbiX-family-flavin-prenyltransferase	unknown	unknown	gnl\|CDD\|180312
NZ_CP040671.1\|WP_149820304.1\|1921213_1921426_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040671.1\|WP_149820307.1\|1922500_1922977_+\|lipoprotein-signal-peptidase	unknown	unknown	gnl\|CDD\|234739
NZ_CP040671.1\|WP_149820318.1\|1933415_1933790_-\|c-type-cytochrome	unknown	unknown	gnl\|CDD\|365823
NZ_CP040671.1\|WP_149820325.1\|1941796_1942465_-\|glycoside-hydrolase-family-protein	unknown	unknown	gnl\|CDD\|227023
NZ_CP040671.1\|WP_149820298.1\|1916844_1917603_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|377614
NZ_CP040671.1\|WP_149820302.1\|1919609_1921217_-\|glutamine-hydrolyzing-GMP-synthase	unknown	unknown	gnl\|CDD\|234614
NZ_CP040671.1\|WP_149821793.1\|1933885_1935220_-\|four-carbon-acid-sugar-kinase-family-protein	unknown	unknown	gnl\|CDD\|225930
NZ_CP040671.1\|WP_149821791.1\|1928540_1929554_-\|23S-rRNA-(adenine(2503)-C(2))-methyltransferase-RlmN	unknown	unknown	gnl\|CDD\|184688
NZ_CP040671.1\|WP_149820327.1\|1942475_1943159_-\|NAD(P)H-binding-protein	unknown	unknown	gnl\|CDD\|187554
NZ_CP040671.1\|WP_149820316.1\|1931961_1933101_-\|glycosyltransferase	unknown	unknown	gnl\|CDD\|133005
NZ_CP040671.1\|WP_149820300.1\|1917670_1919548_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP040671.1\|WP_149821792.1\|1933114_1933336_-\|DUF3148-domain-containing-protein	gnl\|CDD\|371482	pfam11347, DUF3148, Protein of unknown function (DUF3148). This family of proteins has no known function.	3.19807e-33
NZ_CP040671.1\|WP_149820321.1\|1935355_1936366_+\|ADP-ribosylglycohydrolase-family-protein	gnl\|CDD\|377122	pfam03747, ADP_ribosyl_GH, ADP-ribosylglycohydrolase. This family includes enzymes that ADP-ribosylations, for example ADP-ribosylarginine hydrolase EC:3.2.2.19 cleaves ADP-ribose-L-arginine. The family also includes dinitrogenase reductase activating glycohydrolase. Most surprisingly the family also includes jellyfish crystallins, these proteins appear to have lost the presumed active site residues.	2.86915e-68
NZ_CP040671.1\|WP_149821794.1\|1936409_1939943_-\|methionine-synthase	gnl\|CDD\|273959	TIGR02082, Methionine_synthase, 5-methyltetrahydrofolate--homocysteine methyltransferase. This family represents 5-methyltetrahydrofolate--homocysteine methyltransferase (EC 2.1.1.13), one of at least three different enzymes able to convert homocysteine to methionine by transferring a methyl group on to the sulfur atom. It is also called the vitamin B12(or cobalamine)-dependent methionine synthase. Other methionine synthases include 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase (MetE, EC 2.1.1.14, the cobalamin-independent methionine synthase) and betaine-homocysteine methyltransferase. [Amino acid biosynthesis, Aspartate family].	0
NZ_CP040671.1\|WP_149820298.1\|1916844_1917603_+\|hypothetical-protein	gnl\|CDD\|377614	pfam06150, ChaB, ChaB. This family of proteins contain a conserved 60 residue region. This protein is known as ChaB in E. coli and is found next to ChaA which is a cation transporter protein. ChaB may be regulate ChaA function in some way.	7.15605e-06
NZ_CP040671.1\|WP_149820309.1\|1922973_1923729_-\|serine/threonine-protein-phosphatase	gnl\|CDD\|277316	cd00144, MPP_PPP_family, phosphoprotein phosphatases of the metallophosphatase superfamily, metallophosphatase domain. The PPP (phosphoprotein phosphatase) family is one of two known protein phosphatase families specific for serine and threonine. This family includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.	4.36124e-21
NZ_CP040671.1\|WP_149820318.1\|1933415_1933790_-\|c-type-cytochrome	gnl\|CDD\|365823	pfam00034, Cytochrom_C, Cytochrome c. The Pfam entry does not include all Prosite members. The cytochrome 556 and cytochrome c' families are not included. All these are now in a new clan together. The C-terminus of DUF989, pfam06181, has now been merged into this family.	5.97742e-12
NZ_CP040671.1\|WP_149820331.1\|1943689_1944322_-\|UbiX-family-flavin-prenyltransferase	gnl\|CDD\|180312	PRK05920, PRK05920, aromatic acid decarboxylase; Validated.	1.54341e-123
NZ_CP040671.1\|WP_149820305.1\|1921424_1922504_+\|P-loop-NTPase	gnl\|CDD\|378455	pfam10609, ParA, NUBPL iron-transfer P-loop NTPase. This family contains ATPases involved in plasmid partitioning. It also contains the cytosolic Fe-S cluster assembling factor NBP35 which is required for biogenesis and export of both ribosomal subunits.	2.2806e-139
NZ_CP040671.1\|WP_149820307.1\|1922500_1922977_+\|lipoprotein-signal-peptidase	gnl\|CDD\|234739	PRK00376, lspA, lipoprotein signal peptidase.	1.06829e-52
NZ_CP040671.1\|WP_149820325.1\|1941796_1942465_-\|glycoside-hydrolase-family-protein	gnl\|CDD\|227023	COG4678, COG4678, Muramidase (phage lambda lysozyme) [Carbohydrate transport and metabolism].	2.79763e-55
NZ_CP040671.1\|WP_149820311.1\|1925890_1926619_+\|response-regulator	gnl\|CDD\|223816	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription].	1.09986e-88
NZ_CP040671.1\|WP_149820302.1\|1919609_1921217_-\|glutamine-hydrolyzing-GMP-synthase	gnl\|CDD\|234614	PRK00074, guaA, GMP synthase; Reviewed.	0
NZ_CP040671.1\|WP_149821793.1\|1933885_1935220_-\|four-carbon-acid-sugar-kinase-family-protein	gnl\|CDD\|225930	COG3395, COG3395, Uncharacterized protein conserved in bacteria [Function unknown].	6.74986e-98
NZ_CP040671.1\|WP_149820314.1\|1926615_1928487_-\|NYN-domain-containing-protein	gnl\|CDD\|350237	cd11297, PIN_LabA-like_N_1, uncharacterized subfamily of N-terminal LabA-like PIN domains. This N-terminal LabA-like PIN domain is found in a well conserved group of mainly bacterial proteins with no defined function, which contain a C-terminal LabA_like_C domain. LabA from Synechococcus elongatus PCC 7942, (which does not contain this C-terminal domain), has been shown to play a role in cyanobacterial circadian timing. The LabA-like C-terminal domains characteristic of this subfamily may be related to the LOTUS domain family (which also co-occurs with LabA-like N-terminal domains). The function of the N-terminal domain is unknown. The LabA-like PIN domain family also includes the N-terminal domain of limkain b1, a human autoantigen localized to a subset of ABCD3 and PXF marked peroxisomes. Other members are the LabA-like PIN domains of human ZNF451, uncharacterized Bacillus subtilis YqxD and Escherichia coli YaiI. Curiously, a gene labeled NicB from Pseudomonas putida S16, which is described as a putative NADH-dependent hydroxylase involved in the microbial degradation of nicotine also falls into the LabA-like PIN family. The PIN (PilT N terminus) domain belongs to a large nuclease superfamily. The structural properties of the PIN domain indicate its active center, consisting of three highly conserved catalytic residues which coordinate metal ions; in some members, additional metal coordinating residues can be found while some others lack several of these key catalytic residues. The PIN active site is geometrically similar in the active center of structure-specific 5' nucleases, PIN-domain ribonucleases of eukaryotic rRNA editing proteins, and bacterial toxins of toxin-antitoxin (TA) operons.	1.75298e-33
NZ_CP040671.1\|WP_149820327.1\|1942475_1943159_-\|NAD(P)H-binding-protein	gnl\|CDD\|187554	cd05243, SDR_a5, atypical (a) SDRs, subgroup 5. This subgroup contains atypical SDRs, some of which are identified as putative NAD(P)-dependent epimerases, one as a putative NAD-dependent epimerase/dehydratase. Atypical SDRs are distinct from classical SDRs. Members of this subgroup have a glycine-rich NAD(P)-binding motif that is very similar to the extended SDRs, GXXGXXG, and binds NADP. Generally, this subgroup has poor conservation of the active site tetrad; however, individual sequences do contain matches to the YXXXK active site motif, the upstream Ser, and there is a highly conserved Asp in place of the usual active site Asn throughout the subgroup. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif.	2.45002e-67
NZ_CP040671.1\|WP_149820316.1\|1931961_1933101_-\|glycosyltransferase	gnl\|CDD\|133005	cd02511, Beta4Glucosyltransferase, UDP-glucose LOS-beta-1,4 glucosyltransferase is required for biosynthesis of lipooligosaccharide. UDP-glucose: lipooligosaccharide (LOS) beta-1-4-glucosyltransferase catalyzes the addition of the first residue, glucose, of the lacto-N-neotetrase structure to HepI of the LOS inner core. LOS is the major constituent of the outer leaflet of the outer membrane of gram-positive bacteria. It consists of a short oligosaccharide chain of variable composition (alpha chain) attached to a branched inner core which is lined in turn to lipid A. Beta 1,4 glucosyltransferase is required to attach the alpha chain to the inner core.	2.6818e-52
NZ_CP040671.1\|WP_149821791.1\|1928540_1929554_-\|23S-rRNA-(adenine(2503)-C(2))-methyltransferase-RlmN	gnl\|CDD\|184688	PRK14457, PRK14457, 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN.	0

>NZ_CP040671.1|WP_149821791.1|1928540_1929554_-|23S-rRNA-(adenine(2503)-C(2))-methyltransferase-RlmN
MALLGQSAVELKAWVEAQGQPGYRAQQLHQWLYQKGARSLQEITVFPKQWRDALAEVEIGRSQVRYRHDAQDGTVKLLLTLADGETIETVGIPSGDRLTVCVSSQVGCPMACDFCATGKGGYRRNLASHEIIDQVLTIQSEMERRVSHVVFMGMGEPLLNLKAVLQAVTCLNRDIGIGQRHITLSTVGIPQQIQRLAQYQLQITLAVSLHAPNQGLREQLIPSAKHYPLSQLIADCRAYVQQTGRRITFEYTVLAGVNDRPQHAEELAQLLRGFQSHVNLIPYNPITEAAYQRPTEQRLRQFLSQLQALGVTASIRRSRGLDRQAACGQLRQAQLSV
>NZ_CP040671.1|WP_149820314.1|1926615_1928487_-|NYN-domain-containing-protein
MKPELWFIAPVSAIALGGIATLIQPQQPLATLLGSGIGALAGAPLIEKNQRRSDRLIRDIHTVLCSSPETTELKALLLQELAQQRQQLTDLEQHLHQALPEALHPIHNEIMQRLETLKDNQRDAAVNTATAQQLEPLIEAIHAQSAALQTIQTLLQRPQPPATALKTAVLYDIENLVFNQGQRLDPAKVNELVSLDNVLEAIKSTIDLGEIAIQRAYGNWQNQILQALNAQLERSQIERVGVYGRNHNQRNAADIQLALDAIDLAYQHPDINTFVLISGDGGFGSIALRLRDYGKTVIGCAYRNAASDSFQRVCHQFIFLENPFIHSAPATNGRNGTPPPRQPNPENRTAPSSPRRLPIEPLNYEQIPPLAIQQRETEKLLELFSYYTTDATRRRELARGMVFNTVFLEMRSVAPQLDPLRFGFCKPSELVAYLTTHHQLQIGVAVNGQLGRTILCWRNNLPERYTLRTSSPQTIHTVSIYRGIFADEVAADFLLTQVGQWLIAHRPRNAPFERMINIILEQARRQQQRIGQQGIKRAIANYVKAGILTRTLHPSGDTLTLNPAIKDFDALVIALQKSFRQAVEERLSKIGETINEQVFAQAVPLKPLQLPPQSPEKAPESPS
>NZ_CP040671.1|WP_149820311.1|1925890_1926619_+|response-regulator
MKPRILIIDDDPAIADVLAINLQMAGYEVTKSLDGMQGQALAVQLSPDLILLDLMLPQVDGFTICQRLRRDPRTQDVPILMLTALSQTHNKVEGLNAGADDYLTKPFELEEMLARVRALLRRADRIPATAGHREILSYGPLTLVPERFEVSWFGKIIKLTRLEFELLHCLLQRHGQTVSPSEILKEVWGYDPDDDIETIRVHIRHLRTKLEPDPRSPRYIKTVYGAGYCLELPSHIEPPNAS
>NZ_CP040671.1|WP_149820309.1|1922973_1923729_-|serine/threonine-protein-phosphatase
MGDRAACRKDNRLVLIGDVHGHYEGLCRLLDLVSPRVGDRLYFLGDLVDRGPSSAAVVEFVRQCGYSVVRGNHEDMMLLTFEGKQINAAQLFVWSNSGGDETLASYTSTELLWQHLDWLHTVPFYEDLGDVFVVHAGLDPYLSLEQQGSQQCCWIREQFLGHPIPYFADKTIVVGHTITFTFPNVEAGQIVRGAGWIDIETGAYHRRSGWLTALDWTNQWVYQVNVLYGGTRQGELAQFLTDLRDVSYSIS
>NZ_CP040671.1|WP_149820307.1|1922500_1922977_+|lipoprotein-signal-peptidase
MSSQRLKIKNPLFWWAAGLALISDRLTKAWIVATYALTVPPQTTPIIPGVFHITYVTNTGAAFSLFANGSVWLRWLSLIVSLGLITWAVLGPRLDRWQQVGYGCLLGGALGNGIDRFLTGEVVDFLDFRLVQFPVFNVADIAINIGIACLLWSAWRQR
>NZ_CP040671.1|WP_149820305.1|1921424_1922504_+|P-loop-NTPase
MSAPLTVESVLAVLRPVEDPELRRSLVELNMIRDVAIEDGTVRFTLVLTTPACPLREFIVEDCKKAVFTLPGVMDVQVAVTAETPQQKSLPDRTDVAGVKNIIAVSSGKGGVGKSTVAVNLALALAQAGAAVGIIDADIYGPNVPTMLGLEDAIVEVRKEARGDVLLPPVAHGLKVVSMAFLIDRDQPVIWRGPMLNGIIRQFLYQSDWGALDYLIVDLPPGTGDAQLTLAQAVPMAGVVIVTTPQPVALGDARRGLRMFQQLGVTVLGLVENMSYFIPPDLPNRRYDIFGSGGGEALAAEMGVPLLGQVPLELPVREGGDLGQPILIADPQSASAQALRAIAQQVAARVSVAALSPVG
>NZ_CP040671.1|WP_149820304.1|1921213_1921426_-|hypothetical-protein
MQVIRYIRYLDSDRTTVRQIPPPATAAIQQRMQAKTALRRDYTPICLHHISEKGGILESISHLGSEGLQR
>NZ_CP040671.1|WP_149820302.1|1919609_1921217_-|glutamine-hydrolyzing-GMP-synthase
MTHSTLHQPATAAGQGLQRQLIVILDFGSQYSELIARRIRETQVYSEVISYRTTAEQLAQLAPKGIILSGGPNSVYDENAPQCDPEIWNLGIPILGVCYGMQLMVQQLGGTVERATAGEYGKAALFIDDPTDLLTNVEQETIMWMSHGDSVTELPSGFRVLAHTHNTPMAAIAHPERKLYGVQFHPEVVHSVGGIALIRNFVYHICDCEPTWTTAAFVEEAIREVRAKVGDKRVLLALSGGVDSSTLAFLLHRAIGDQLTCMFIDQGFMRKGEPERLLKLFQEQFHIKVEYVNARDRFLAQLVGVTDPEEKRKRIGHEFIRVFEEESQRLGPFDYLAQGTLYPDVIESANTNIDPQTGERVAVKIKSHHNVGGLPENLRFKLVEPLRKLFKDEVRQVGRSLGLPEEIVRRHPFPGPGLAIRILGEVTPERLEILRDADLIVRQEINRAEMYHDFWQAFAVLLPIRTVGVMGDQRTYAYPVVLRFVTSEDGMTADWARVPYDLLERISNRIVNEVPGVNRVVYDITSKPPGTIEWE
>NZ_CP040671.1|WP_149820300.1|1917670_1919548_-|hypothetical-protein
MNSKWTLALGFSAGVWLPLAATAQSSPPQWQIEARPITHPTFEVAPTVEALPQWQAVPEPRGDRPWQPATPEELAQPILPPVAEQAPTPVIAEEPQYRIPPLMRPPTRLFNLETANILPEQTLELRGGIRNYDPQVAGGGGGLQIFYGSIDYAINHRLQVSFSGNYYDDPLGRLVKGLQPDLQFGAIAAGLKYQVHRGENLSVAVAGSLEAVRVRSDNFLFVPGAARAGTWTVAASLQAPMTYSFNPQLQWHFTPNLTYFPDTVNKGGEFYGTNFNFGTGISWQPHPRFNLFADVNMPVGPGGNAVRSSDGAIVNLPVWSAGVRFLVNPAVSIDLAATNAFGITPASRTLAFLPGADQVGVMAGLSYTPNMGPDFAPPFLPSFRSGPRQPLTDRDRQLLLNGLTLTSPSTLDLGMLHLRGNSGTTGTGFQVGFGLAYDAQFAIAIEQWERGETLIENLNYSGNLQLGLAAKLRFLDQTQGDPFSLAFQGSFNRGIKQGGGGSRSLGGLELAFMYEPTKNVALLLNPKLGIFTPNQKVVGGIGVGLNVEVVRNLQFIAEATPVFGQTGVYSAGLRYVVPQWGLGIDLYGSTAVGSSIPNAGLVGQGSPGVGVNLHWLFGGSRPQEN
>NZ_CP040671.1|WP_149820298.1|1916844_1917603_+|hypothetical-protein
MRTTFAQPATKCVSATFKEEAKVKEAIERLLNRGVPKENISIIGRNFQSEARISGFITKKDIILDGVTTGALYGSIFGSLLSLLTGVGVLFIPFIGVVAAAGPLAAALLGATSGALYGALGAGLGSALISLGMPQDKAAIYQTRVQAGEFLLVVEVPEDKAGEIFLLLQSAGGQEAAITEMQIPRQPEGQLSGPEDISPEVRADLSETAQSKFVEAYNEALKESNDEKNALIKAWEHIKRLFQRDDKGIYGS
>NZ_CP040671.1|WP_149820316.1|1931961_1933101_-|glycosyltransferase
MAPLLSLCMIVKNEAHQLRRCLQSVRPWVDEIIVVDTGSTDETIAIAHEFTPHVHAVVWQADFAAARNASLAHASGEWVFYIDADEELVVTDPQWRDQLTAASAHIINQWSLLRREQARELNWSEFWNVRFGRRFPDLHFAGALHEQLYYRERQAVVGQLQGVYLIHHNQQTPDQFLAKLRDRNIPILEKMVQQGDRRLQNLVCLGDHYAACGDGDRAQTWYEQALEQIAPAVEQGVLPKDTTWLRHLLFWVSYRAFEAKDYETAQYYLSYGLRFFDRYPPLLYVAGLLIFELGLHRGALPYFHRCLDLFEQGTYDRAEPFDRQWMTTQPAYSLGFTYMTLQERDRAIAYFQKTLEFNPDYSPAQMYLQQLLTASANQG
>NZ_CP040671.1|WP_149821792.1|1933114_1933336_-|DUF3148-domain-containing-protein
MGMEEAFAVGDRVRLVELPPYVKTAEPMPMLRPASILTLGEEGVILSQQPGNYWVVRLGRGAFLLEAKYLKRL
>NZ_CP040671.1|WP_149820318.1|1933415_1933790_-|c-type-cytochrome
MSLVNTVGVRSTVWRWLLPVLVVLVVGGGWGVSLLLPLRDPYIQSVRAAVGDPSRGEQIFILNCAGCHGIDGKGEVGPSLVQISHRRSQTKLIQQIISGNTPPMPKFQAQPQDMADLLSYLKTL
>NZ_CP040671.1|WP_149821793.1|1933885_1935220_-|four-carbon-acid-sugar-kinase-family-protein
MTRPKIIVLDDDPTGSQTVHSCLLLTRWDVDTLCRGLTDPVPIFFILTNTRALPAEIAAEVTRTVCCHLKAAIAQTGTTDYMVVSRSDSTLRGHYPLETDVIAAELGPFDAHFLVPAFLEGGRITRDSQHYLLIAGQPVPVHETEFARDSVFGYHHSYLPDYVAEKTQGRIPAATVERFVLADVRNPETLRSRLSQLQGNVCGVVDAESQEDLDQFAAAVLELASQGKRFLFRSAASLLTALAQLPPQPTPPEAMATYCRPGRYGVVLVGSHVRKTTEQLTALLEEPDVFPIEVPVARLRDSGAAEPDIINEVLAAVDQAIASEKTPVIFTSREELTFADAATRLAFGQRVSEVLMAIVQQLPADLRYLISKGGITSNDVLSKGLNLATVRLLGQVIPGCSVVRTGADHPRFPELPVVLFPGNVGDREALRTVYHRFQGNGTAV
>NZ_CP040671.1|WP_149820321.1|1935355_1936366_+|ADP-ribosylglycohydrolase-family-protein
MNAEYVVNGLLGACLGDALGVPVEFSTRWERDRDPVVDMRSYGTYYQPRGTWSDDSSLMLCLADALCGGFDLEQIAAKFLAWYTENLWTARGTVFDIGIATRRALMKLEAGNSPLTSGGTDEYSNGNGGLMRTLPLAFQYWRHRDQQRLLEEVHQVCGITHAHPRSQLACGIYVFFAIQLQQGMAPMRAYEATIAWANTTYNHDSFAAELHHFERILSGKLPHLDRGAIASGGYVVHTLEASLWCLLNSQSYLEAVLKAVNLGGDTDTTATVTGGIAALAFGLGDVPADWWQTLARYKDIVALGQQLGQAISENPYPLRGVPIEYTDPTEPVALED
>NZ_CP040671.1|WP_149821794.1|1936409_1939943_-|methionine-synthase
MSFLEYLHAEPRRVIVFDGAMGTNLQAQNLTAEDFGGKAYEGCNEYLVISKPEAVAKVHRDFLAAGADVIETNTFGASSVVLSEYNLGDRAYEISKKAAELAKSVAAEFSTPEKPRFVAGSMGPGTKLPTLGHIDYDTLYTAFREQAAGLFDGGVDLFIIETCQDVLQIKAALNGVMAVFWERGERRPLMVSVTMEQQGTMLVGSEIGAALTILEPYPIDILGLNCATGPDLMTEHIRYLSQHSPFVISCIPNAGLPENIGGCAYYKLTPMELRLALTRFVEDFGVQVIGGCCGTRPDHIAALAEIAATLTPKARSPQRIPAAASIYSPQPYDQENSFLIIGERLNASGSKKCRDLLNAEDWDGLVALARAQVREGAHILDVNVDYVGRDGVRDMHELVSRLVTNVTLPLMLDSTEWQKMEAGLKVAGGKCLLNSTNFEDGEPRFYKVLELAKTYGAGVVVGTIDEEGMARTAEKKFAIAERAYKAALDYGIPPYEIFFDPLALPISTGIEEDRVNGRETIAAIRRIRAELPGCHILLGVSNISFGLNPAARQVLNSMFLHEAMQAGMDAAIVSAAKILPLAKIEPEHQEVCRDLIYDRRRFEGDVCVYDPLAELTRLFEGKTTQPDRSQVENLPIEERLKRHIIDGDRLGLEDTLAKALETYTPLEIINTFLLDGMRVVGERFGAGQMQLPFVLQSAETMKAAVAYLEPFMEKSATGDTAKGTVVIATVKGDVHDIGKNLVDIILTNNGYRVINLGIKQPVENIIQAYKEHQADCIAMSGLLVKSTAFMKENLEIFNERGITVPVILGGAALTPKFVYEDCRATYHGQVIYGKDAFADLHFMDRLMRAKAAGQWDDRQGFLDGTTVSPPEAEATPAPPSVTEPETPEVVDTRRSDAVALEIPRPTPPFWGIRHLKADQIPLSEVFAYLDLQALIAGQWQFRKPKDQDRATYDAFLAEKVYPILEEWKQRILAENLLHPELIYGYFPCQSEGNTVYLYDPQRVGDKSACVPERAIAQFTFPRQKRGRRLCIADFFAPVASGIIDVFPMQAVTVGEIATQVAQELFAANQYSDYLYFHGMAVQTAEALAEWCHARIRRELGCTPDPESIRDILAQRYQGSRYSFGYPACPNMQDQYTLLRLLESDRMGMYMDESEQLYPEQSTTAIICYHPTAKYFSA
>NZ_CP040671.1|WP_149820325.1|1941796_1942465_-|glycoside-hydrolase-family-protein
MRFSRWLLAIALLVGMGYFFFGSRSSALWWYWYRWQPGQIAPLVMQGGDPYVRALMRTISASEANDANPYTLLYGGEHIQDLSQHPDRCIPIRRGPNQHLCTTAAGRYQFLTTTWAEKAARYHPQPPSWFWQGYSFAPEYQDQVVYRWLTDPAAWNADIPQLLREGRVQEVFALLSDTWTSLGYGLESNLITPHLEEIYQQLLAQELAASQTAHSPGRDALR
>NZ_CP040671.1|WP_149820327.1|1942475_1943159_-|NAD(P)H-binding-protein
MPSEGRAVKVAVVGATGRTGHRIVNALQASEHQAIAVVRNPAKAQGRWPTVEIRTADVTQPQTLPPALKECDAVICATGASPSLNPLEPLSVDYLGTKNLVDAAKAADVQQFILVSSLCVSQFFHPLNLFWLILYWKQQAERYLQESGLTYTIVRPGGLKETDDGGFPIIAPADTLFEGSIARSRVAEICVAALGEPSAYNKIFEVVSRPDQTPAAYPELFRSIAAV
>NZ_CP040671.1|WP_149820329.1|1943168_1943690_-|hypothetical-protein
MRAWIYLGAIALLTTLVVQNWQPLVSLRFLGQQTPALPLAAWLVVAALSGIVAGQCLLWLTAEAPAPVARPTPRSQPPEPELDASMRPPEDEPEIDTSDVEDWFSEPESAPREPEIQDRPRTTYSYQYRPSRKATAKAPPPPEEVVDAEYRILTPPPPKDAPPEDEEDWDIPL
>NZ_CP040671.1|WP_149820331.1|1943689_1944322_-|UbiX-family-flavin-prenyltransferase
MIAVVTSSSLPIVLGVTGASGLIYAVRAIKFLLRADYPIQLVASKAVHQVWQAEYGLTLPIQPDKQELFWREQAQVWEGSLTCHRPTDVAAAIASGSFRTLGMVILPCSMSTVAKLAAGLSSDLLERVADVHLKEHRPLVLVPRETPFSLIHLQNLTQLAMAGARIVPAIPAWYHRPQTIEDLVDFVIARALDQLGLDCVPLQRWQGPLS

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Crispr_ID: NZ_CP040671_6

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP040671_6

1940135-1941602

Orphan

Consensus_repeat	Method
GTTTCCACTTAATCTACTTCCCCGAAGGGAAGCAAG	PILER-CR
GTTTCCACTTAATCTACTTCCCCGAAGGGAAGCAAG	CRISPRCasFinder
GTTTCCACTTAATCTACTTCCCCGAAGGGAAGCAAG	CRT

19 spacers

The CRISPR arrays of NZ_CP040671_6

>merge|NZ_CP040671|6|1940135-1941602|PILER-CR,CRISPRCasFinder,CRT
GTTTCCATTTAATCTACTTCCCCGAAGGGAAGCAAGGTTTGAGGGTGGGCTTAAACTTCACCCAAATACCAAGATGTTTCCACTTAATCTACTTCCCCGAAGGGAAGCAAGTTGACCCTAGGTGGTCTTTCAAATAACCAAATTTTTGACCTGTTTCCACTTAATCTACTTCCCCGAAGGGAAGCAAGTTGACCCTAGGTGGTCTTTCAAATAACCAAATTTTTGACCTGTTTCCACTTAATCTACTTCCCCGAAGGGAAGCAAGTTCCCTTTGCGGTCGCACAACTTATCAAGAAGTTGTGTTTCCACTTAATCTACTTCCCCGAAGGGAAGCAAGTCCTATTAATATTTTGAACTTAACTACAGACGCGGTGATCAAGTTTCCACTTAATCTACTTCCCCGAAGGGAAGCAAGTTACATCTACTAACCATGATTTTGGTAAGCATACATTGACTTTATGTTTCCACTTAATCTACTTCCCCGAAGGGAAGCAAGGGGTTTTCTTGCAAGTCAACTAGAATCACCAACCAAGTTTCCACTTAATCTACTTCCCCGAAGGGAAGCAAGCAAACAAGTTTTCGTGCCGATTGGGTTCCTTGTTCTAGGCGGGTTTCCACTTAATCTACTTCCCCGAAGGGAAGCAAGAACAGAAGGGAACAAGATTCTAAAAGGTCTATTGGCACAAGTTTCCACTTAATCTACTTCCCCGAAGGGAAGCAAGATCTCCAACAGAAATGTTGGAAATATTGTATAAATTTAGAATGTTTCCACTTAATCTACTTCCCCGAAGGGAAGCAAGTACTTGTTTTTTTTGTTGTTTCATTGGAGGTTTAGTATGTTTCCACTTAATCTACTTCCCCGAAGGGAAGCAAGTCTCTGTCCGCCTCTCTACGAGAGGCAATTGTTTGGGTGTTTCCACTTAATCTACTTCCCCGAAGGGAAGCAAGTACTGCGGTGACACAGCTACTCAGTTTTGGTGAACTGAAGTTTCCACTTAATCTACTTCCCCGAAGGGAAGCAAGAAAAAGCGTTTGTCCCAATTGGGTTTCTTACCCTAGGGTTTCCACTTAATCTACTTCCCCGAAGGGAAGCAAGAGCGAACACAATTTAGCAGTAATTCCTTTGGAATTGTTTCCACTTAATCTACTTCCCCGAAGGGAAGCAAGTTAAAGAATATTGGGATGGTTGCATTTTTGGGGATTTGTTTCCACTTAATCTACTTCCCCGAAGGGAAGCAAGTTGGGAAAACCCTCAAACAGAGGGTTCCAAAATCTTAAGTTTCCACTTAATCTACTTCCCCGAAGGGAAGCAAGAAGGAAATAAATCAATGAAAAAATCTCCATTAGAAATGTTGTTTCCACTTAATCTACTTCCCCGAAGGGAAGCAAGAACAGGCTACACCATCGACAAGGACTACGTAACCTTGTTTGAGTTTCCACTTAATCTACTTCCCCGAAGGGAAGCAAG

>NZ_CP040671|6|6|1940135-1941602|PILER-CR
GTTTCCATTTAATCTACTTCCCCGAAGGGAAGCAAG	GTTTGAGGGTGGGCTTAAACTTCACCCAAATACCAAGAT
GTTTCCACTTAATCTACTTCCCCGAAGGGAAGCAAG	TTGACCCTAGGTGGTCTTTCAAATAACCAAATTTTTGACCT
GTTTCCACTTAATCTACTTCCCCGAAGGGAAGCAAG	TTGACCCTAGGTGGTCTTTCAAATAACCAAATTTTTGACCT
GTTTCCACTTAATCTACTTCCCCGAAGGGAAGCAAG	TTCCCTTTGCGGTCGCACAACTTATCAAGAAGTTGT
GTTTCCACTTAATCTACTTCCCCGAAGGGAAGCAAG	TCCTATTAATATTTTGAACTTAACTACAGACGCGGTGATCAA
GTTTCCACTTAATCTACTTCCCCGAAGGGAAGCAAG	TTACATCTACTAACCATGATTTTGGTAAGCATACATTGACTTTAT
GTTTCCACTTAATCTACTTCCCCGAAGGGAAGCAAG	GGGTTTTCTTGCAAGTCAACTAGAATCACCAACCAA
GTTTCCACTTAATCTACTTCCCCGAAGGGAAGCAAG	CAAACAAGTTTTCGTGCCGATTGGGTTCCTTGTTCTAGGCGG
GTTTCCACTTAATCTACTTCCCCGAAGGGAAGCAAG	AACAGAAGGGAACAAGATTCTAAAAGGTCTATTGGCACAA
GTTTCCACTTAATCTACTTCCCCGAAGGGAAGCAAG	ATCTCCAACAGAAATGTTGGAAATATTGTATAAATTTAGAAT
GTTTCCACTTAATCTACTTCCCCGAAGGGAAGCAAG	TACTTGTTTTTTTTGTTGTTTCATTGGAGGTTTAGTAT
GTTTCCACTTAATCTACTTCCCCGAAGGGAAGCAAG	TCTCTGTCCGCCTCTCTACGAGAGGCAATTGTTTGGGT
GTTTCCACTTAATCTACTTCCCCGAAGGGAAGCAAG	TACTGCGGTGACACAGCTACTCAGTTTTGGTGAACTGAA
GTTTCCACTTAATCTACTTCCCCGAAGGGAAGCAAG	AAAAAGCGTTTGTCCCAATTGGGTTTCTTACCCTAGG
GTTTCCACTTAATCTACTTCCCCGAAGGGAAGCAAG	AGCGAACACAATTTAGCAGTAATTCCTTTGGAATT
GTTTCCACTTAATCTACTTCCCCGAAGGGAAGCAAG	TTAAAGAATATTGGGATGGTTGCATTTTTGGGGATTT
GTTTCCACTTAATCTACTTCCCCGAAGGGAAGCAAG	TTGGGAAAACCCTCAAACAGAGGGTTCCAAAATCTTAA
GTTTCCACTTAATCTACTTCCCCGAAGGGAAGCAAG	AAGGAAATAAATCAATGAAAAAATCTCCATTAGAAATGTT
GTTTCCACTTAATCTACTTCCCCGAAGGGAAGCAAG	AACAGGCTACACCATCGACAAGGACTACGTAACCTTGTTTGA
GTTTCCACTTAATCTACTTCCCCGAAGGGAAGCAAG

>NZ_CP040671|6|6|1940135-1941602|CRISPRCasFinder
GTTTCCATTTAATCTACTTCCCCGAAGGGAAGCAAG	GTTTGAGGGTGGGCTTAAACTTCACCCAAATACCAAGAT
GTTTCCACTTAATCTACTTCCCCGAAGGGAAGCAAG	TTGACCCTAGGTGGTCTTTCAAATAACCAAATTTTTGACCT
GTTTCCACTTAATCTACTTCCCCGAAGGGAAGCAAG	TTGACCCTAGGTGGTCTTTCAAATAACCAAATTTTTGACCT
GTTTCCACTTAATCTACTTCCCCGAAGGGAAGCAAG	TTCCCTTTGCGGTCGCACAACTTATCAAGAAGTTGT
GTTTCCACTTAATCTACTTCCCCGAAGGGAAGCAAG	TCCTATTAATATTTTGAACTTAACTACAGACGCGGTGATCAA
GTTTCCACTTAATCTACTTCCCCGAAGGGAAGCAAG	TTACATCTACTAACCATGATTTTGGTAAGCATACATTGACTTTAT
GTTTCCACTTAATCTACTTCCCCGAAGGGAAGCAAG	GGGTTTTCTTGCAAGTCAACTAGAATCACCAACCAA
GTTTCCACTTAATCTACTTCCCCGAAGGGAAGCAAG	CAAACAAGTTTTCGTGCCGATTGGGTTCCTTGTTCTAGGCGG
GTTTCCACTTAATCTACTTCCCCGAAGGGAAGCAAG	AACAGAAGGGAACAAGATTCTAAAAGGTCTATTGGCACAA
GTTTCCACTTAATCTACTTCCCCGAAGGGAAGCAAG	ATCTCCAACAGAAATGTTGGAAATATTGTATAAATTTAGAAT
GTTTCCACTTAATCTACTTCCCCGAAGGGAAGCAAG	TACTTGTTTTTTTTGTTGTTTCATTGGAGGTTTAGTAT
GTTTCCACTTAATCTACTTCCCCGAAGGGAAGCAAG	TCTCTGTCCGCCTCTCTACGAGAGGCAATTGTTTGGGT
GTTTCCACTTAATCTACTTCCCCGAAGGGAAGCAAG	TACTGCGGTGACACAGCTACTCAGTTTTGGTGAACTGAA
GTTTCCACTTAATCTACTTCCCCGAAGGGAAGCAAG	AAAAAGCGTTTGTCCCAATTGGGTTTCTTACCCTAGG
GTTTCCACTTAATCTACTTCCCCGAAGGGAAGCAAG	AGCGAACACAATTTAGCAGTAATTCCTTTGGAATT
GTTTCCACTTAATCTACTTCCCCGAAGGGAAGCAAG	TTAAAGAATATTGGGATGGTTGCATTTTTGGGGATTT
GTTTCCACTTAATCTACTTCCCCGAAGGGAAGCAAG	TTGGGAAAACCCTCAAACAGAGGGTTCCAAAATCTTAA
GTTTCCACTTAATCTACTTCCCCGAAGGGAAGCAAG	AAGGAAATAAATCAATGAAAAAATCTCCATTAGAAATGTT
GTTTCCACTTAATCTACTTCCCCGAAGGGAAGCAAG	AACAGGCTACACCATCGACAAGGACTACGTAACCTTGTTTGA
GTTTCCACTTAATCTACTTCCCCGAAGGGAAGCAAG

>NZ_CP040671|6|5|1940135-1941602|CRT
GTTTCCATTTAATCTACTTCCCCGAAGGGAAGCAAG	GTTTGAGGGTGGGCTTAAACTTCACCCAAATACCAAGAT
GTTTCCACTTAATCTACTTCCCCGAAGGGAAGCAAG	TTGACCCTAGGTGGTCTTTCAAATAACCAAATTTTTGACCT
GTTTCCACTTAATCTACTTCCCCGAAGGGAAGCAAG	TTGACCCTAGGTGGTCTTTCAAATAACCAAATTTTTGACCT
GTTTCCACTTAATCTACTTCCCCGAAGGGAAGCAAG	TTCCCTTTGCGGTCGCACAACTTATCAAGAAGTTGT
GTTTCCACTTAATCTACTTCCCCGAAGGGAAGCAAG	TCCTATTAATATTTTGAACTTAACTACAGACGCGGTGATCAA
GTTTCCACTTAATCTACTTCCCCGAAGGGAAGCAAG	TTACATCTACTAACCATGATTTTGGTAAGCATACATTGACTTTAT
GTTTCCACTTAATCTACTTCCCCGAAGGGAAGCAAG	GGGTTTTCTTGCAAGTCAACTAGAATCACCAACCAA
GTTTCCACTTAATCTACTTCCCCGAAGGGAAGCAAG	CAAACAAGTTTTCGTGCCGATTGGGTTCCTTGTTCTAGGCGG
GTTTCCACTTAATCTACTTCCCCGAAGGGAAGCAAG	AACAGAAGGGAACAAGATTCTAAAAGGTCTATTGGCACAA
GTTTCCACTTAATCTACTTCCCCGAAGGGAAGCAAG	ATCTCCAACAGAAATGTTGGAAATATTGTATAAATTTAGAAT
GTTTCCACTTAATCTACTTCCCCGAAGGGAAGCAAG	TACTTGTTTTTTTTGTTGTTTCATTGGAGGTTTAGTAT
GTTTCCACTTAATCTACTTCCCCGAAGGGAAGCAAG	TCTCTGTCCGCCTCTCTACGAGAGGCAATTGTTTGGGT
GTTTCCACTTAATCTACTTCCCCGAAGGGAAGCAAG	TACTGCGGTGACACAGCTACTCAGTTTTGGTGAACTGAA
GTTTCCACTTAATCTACTTCCCCGAAGGGAAGCAAG	AAAAAGCGTTTGTCCCAATTGGGTTTCTTACCCTAGG
GTTTCCACTTAATCTACTTCCCCGAAGGGAAGCAAG	AGCGAACACAATTTAGCAGTAATTCCTTTGGAATT
GTTTCCACTTAATCTACTTCCCCGAAGGGAAGCAAG	TTAAAGAATATTGGGATGGTTGCATTTTTGGGGATTT
GTTTCCACTTAATCTACTTCCCCGAAGGGAAGCAAG	TTGGGAAAACCCTCAAACAGAGGGTTCCAAAATCTTAA
GTTTCCACTTAATCTACTTCCCCGAAGGGAAGCAAG	AAGGAAATAAATCAATGAAAAAATCTCCATTAGAAATGTT
GTTTCCACTTAATCTACTTCCCCGAAGGGAAGCAAG	AACAGGCTACACCATCGACAAGGACTACGTAACCTTGTTTGA
GTTTCCACTTAATCTACTTCCCCGAAGGGAAGCAAG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP040671.1\|WP_149820329.1\|1943168_1943690_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040671.1\|WP_149820339.1\|1946732_1947473_-\|phosphoadenosine-phosphosulfate-reductase	unknown	unknown	gnl\|CDD\|131112
NZ_CP040671.1\|WP_149821792.1\|1933114_1933336_-\|DUF3148-domain-containing-protein	unknown	unknown	gnl\|CDD\|371482
NZ_CP040671.1\|WP_149820321.1\|1935355_1936366_+\|ADP-ribosylglycohydrolase-family-protein	unknown	unknown	gnl\|CDD\|377122
NZ_CP040671.1\|WP_149821794.1\|1936409_1939943_-\|methionine-synthase	unknown	unknown	gnl\|CDD\|273959
NZ_CP040671.1\|WP_149820311.1\|1925890_1926619_+\|response-regulator	unknown	unknown	gnl\|CDD\|223816
NZ_CP040671.1\|WP_149820309.1\|1922973_1923729_-\|serine/threonine-protein-phosphatase	unknown	unknown	gnl\|CDD\|277316
NZ_CP040671.1\|WP_149820325.1\|1941796_1942465_-\|glycoside-hydrolase-family-protein	unknown	unknown	gnl\|CDD\|227023
NZ_CP040671.1\|WP_149820331.1\|1943689_1944322_-\|UbiX-family-flavin-prenyltransferase	unknown	unknown	gnl\|CDD\|180312
NZ_CP040671.1\|WP_149820314.1\|1926615_1928487_-\|NYN-domain-containing-protein	unknown	unknown	gnl\|CDD\|350237
NZ_CP040671.1\|WP_149820335.1\|1944916_1945816_-\|polysaccharide-deacetylase-family-protein	unknown	unknown	gnl\|CDD\|213022
NZ_CP040671.1\|WP_149820318.1\|1933415_1933790_-\|c-type-cytochrome	unknown	unknown	gnl\|CDD\|365823
NZ_CP040671.1\|WP_149820333.1\|1944407_1944920_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040671.1\|WP_149820342.1\|1947559_1947754_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040671.1\|WP_149820327.1\|1942475_1943159_-\|NAD(P)H-binding-protein	unknown	unknown	gnl\|CDD\|187554
NZ_CP040671.1\|WP_149820337.1\|1945840_1946770_-\|glycine--tRNA-ligase-subunit-alpha	unknown	unknown	gnl\|CDD\|236473
NZ_CP040671.1\|WP_149821793.1\|1933885_1935220_-\|four-carbon-acid-sugar-kinase-family-protein	unknown	unknown	gnl\|CDD\|225930
NZ_CP040671.1\|WP_149820316.1\|1931961_1933101_-\|glycosyltransferase	unknown	unknown	gnl\|CDD\|133005
NZ_CP040671.1\|WP_149820343.1\|1947757_1948117_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040671.1\|WP_149821791.1\|1928540_1929554_-\|23S-rRNA-(adenine(2503)-C(2))-methyltransferase-RlmN	unknown	unknown	gnl\|CDD\|184688

Protein	Function_ID	Function_description	E-value
NZ_CP040671.1\|WP_149820339.1\|1946732_1947473_-\|phosphoadenosine-phosphosulfate-reductase	gnl\|CDD\|131112	TIGR02057, Phosphoadenosine_phosphosulfate_reductase, phosphoadenosine phosphosulfate reductase, thioredoxin dependent. Requiring thioredoxin as an electron donor, phosphoadenosine phosphosulfate reductase catalyzes the reduction of 3'-phosphoadenylylsulfate (PAPS) to sulfite and phospho-adenosine-phosphate (PAP). Found in enterobacteria, cyanobacteria, and yeast, PAPS reductase is related to a group of plant (TIGR00424) and bacterial (TIGR02055) enzymes preferring 5'-adenylylsulfate (APS) over PAPS as a substrate for reduction to sulfite. [Central intermediary metabolism, Sulfur metabolism].	2.37639e-113
NZ_CP040671.1\|WP_149821792.1\|1933114_1933336_-\|DUF3148-domain-containing-protein	gnl\|CDD\|371482	pfam11347, DUF3148, Protein of unknown function (DUF3148). This family of proteins has no known function.	3.19807e-33
NZ_CP040671.1\|WP_149820321.1\|1935355_1936366_+\|ADP-ribosylglycohydrolase-family-protein	gnl\|CDD\|377122	pfam03747, ADP_ribosyl_GH, ADP-ribosylglycohydrolase. This family includes enzymes that ADP-ribosylations, for example ADP-ribosylarginine hydrolase EC:3.2.2.19 cleaves ADP-ribose-L-arginine. The family also includes dinitrogenase reductase activating glycohydrolase. Most surprisingly the family also includes jellyfish crystallins, these proteins appear to have lost the presumed active site residues.	2.86915e-68
NZ_CP040671.1\|WP_149821794.1\|1936409_1939943_-\|methionine-synthase	gnl\|CDD\|273959	TIGR02082, Methionine_synthase, 5-methyltetrahydrofolate--homocysteine methyltransferase. This family represents 5-methyltetrahydrofolate--homocysteine methyltransferase (EC 2.1.1.13), one of at least three different enzymes able to convert homocysteine to methionine by transferring a methyl group on to the sulfur atom. It is also called the vitamin B12(or cobalamine)-dependent methionine synthase. Other methionine synthases include 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase (MetE, EC 2.1.1.14, the cobalamin-independent methionine synthase) and betaine-homocysteine methyltransferase. [Amino acid biosynthesis, Aspartate family].	0
NZ_CP040671.1\|WP_149820311.1\|1925890_1926619_+\|response-regulator	gnl\|CDD\|223816	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription].	1.09986e-88
NZ_CP040671.1\|WP_149820309.1\|1922973_1923729_-\|serine/threonine-protein-phosphatase	gnl\|CDD\|277316	cd00144, MPP_PPP_family, phosphoprotein phosphatases of the metallophosphatase superfamily, metallophosphatase domain. The PPP (phosphoprotein phosphatase) family is one of two known protein phosphatase families specific for serine and threonine. This family includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.	4.36124e-21
NZ_CP040671.1\|WP_149820325.1\|1941796_1942465_-\|glycoside-hydrolase-family-protein	gnl\|CDD\|227023	COG4678, COG4678, Muramidase (phage lambda lysozyme) [Carbohydrate transport and metabolism].	2.79763e-55
NZ_CP040671.1\|WP_149820331.1\|1943689_1944322_-\|UbiX-family-flavin-prenyltransferase	gnl\|CDD\|180312	PRK05920, PRK05920, aromatic acid decarboxylase; Validated.	1.54341e-123
NZ_CP040671.1\|WP_149820314.1\|1926615_1928487_-\|NYN-domain-containing-protein	gnl\|CDD\|350237	cd11297, PIN_LabA-like_N_1, uncharacterized subfamily of N-terminal LabA-like PIN domains. This N-terminal LabA-like PIN domain is found in a well conserved group of mainly bacterial proteins with no defined function, which contain a C-terminal LabA_like_C domain. LabA from Synechococcus elongatus PCC 7942, (which does not contain this C-terminal domain), has been shown to play a role in cyanobacterial circadian timing. The LabA-like C-terminal domains characteristic of this subfamily may be related to the LOTUS domain family (which also co-occurs with LabA-like N-terminal domains). The function of the N-terminal domain is unknown. The LabA-like PIN domain family also includes the N-terminal domain of limkain b1, a human autoantigen localized to a subset of ABCD3 and PXF marked peroxisomes. Other members are the LabA-like PIN domains of human ZNF451, uncharacterized Bacillus subtilis YqxD and Escherichia coli YaiI. Curiously, a gene labeled NicB from Pseudomonas putida S16, which is described as a putative NADH-dependent hydroxylase involved in the microbial degradation of nicotine also falls into the LabA-like PIN family. The PIN (PilT N terminus) domain belongs to a large nuclease superfamily. The structural properties of the PIN domain indicate its active center, consisting of three highly conserved catalytic residues which coordinate metal ions; in some members, additional metal coordinating residues can be found while some others lack several of these key catalytic residues. The PIN active site is geometrically similar in the active center of structure-specific 5' nucleases, PIN-domain ribonucleases of eukaryotic rRNA editing proteins, and bacterial toxins of toxin-antitoxin (TA) operons.	1.75298e-33
NZ_CP040671.1\|WP_149820335.1\|1944916_1945816_-\|polysaccharide-deacetylase-family-protein	gnl\|CDD\|213022	cd10917, CE4_NodB_like_6s_7s, Catalytic NodB homology domain of rhizobial NodB-like proteins. This family belongs to the large and functionally diverse carbohydrate esterase 4 (CE4) superfamily, whose members show strong sequence similarity with some variability due to their distinct carbohydrate substrates. It includes many rhizobial NodB chitooligosaccharide N-deacetylase (EC 3.5.1.-)-like proteins, mainly from bacteria and eukaryotes, such as chitin deacetylases (EC 3.5.1.41), bacterial peptidoglycan N-acetylglucosamine deacetylases (EC 3.5.1.-), and acetylxylan esterases (EC 3.1.1.72), which catalyze the N- or O-deacetylation of substrates such as acetylated chitin, peptidoglycan, and acetylated xylan. All members of this family contain a catalytic NodB homology domain with the same overall topology and a deformed (beta/alpha)8 barrel fold with 6- or 7 strands. Their catalytic activity is dependent on the presence of a divalent cation, preferably cobalt or zinc, and they employ a conserved His-His-Asp zinc-binding triad closely associated with the conserved catalytic base (aspartic acid) and acid (histidine) to carry out acid/base catalysis. Several family members show diversity both in metal ion specificities and in the residues that coordinate the metal.	2.85654e-70
NZ_CP040671.1\|WP_149820318.1\|1933415_1933790_-\|c-type-cytochrome	gnl\|CDD\|365823	pfam00034, Cytochrom_C, Cytochrome c. The Pfam entry does not include all Prosite members. The cytochrome 556 and cytochrome c' families are not included. All these are now in a new clan together. The C-terminus of DUF989, pfam06181, has now been merged into this family.	5.97742e-12
NZ_CP040671.1\|WP_149820327.1\|1942475_1943159_-\|NAD(P)H-binding-protein	gnl\|CDD\|187554	cd05243, SDR_a5, atypical (a) SDRs, subgroup 5. This subgroup contains atypical SDRs, some of which are identified as putative NAD(P)-dependent epimerases, one as a putative NAD-dependent epimerase/dehydratase. Atypical SDRs are distinct from classical SDRs. Members of this subgroup have a glycine-rich NAD(P)-binding motif that is very similar to the extended SDRs, GXXGXXG, and binds NADP. Generally, this subgroup has poor conservation of the active site tetrad; however, individual sequences do contain matches to the YXXXK active site motif, the upstream Ser, and there is a highly conserved Asp in place of the usual active site Asn throughout the subgroup. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif.	2.45002e-67
NZ_CP040671.1\|WP_149820337.1\|1945840_1946770_-\|glycine--tRNA-ligase-subunit-alpha	gnl\|CDD\|236473	PRK09348, glyQ, glycyl-tRNA synthetase subunit alpha; Validated.	0
NZ_CP040671.1\|WP_149821793.1\|1933885_1935220_-\|four-carbon-acid-sugar-kinase-family-protein	gnl\|CDD\|225930	COG3395, COG3395, Uncharacterized protein conserved in bacteria [Function unknown].	6.74986e-98
NZ_CP040671.1\|WP_149820316.1\|1931961_1933101_-\|glycosyltransferase	gnl\|CDD\|133005	cd02511, Beta4Glucosyltransferase, UDP-glucose LOS-beta-1,4 glucosyltransferase is required for biosynthesis of lipooligosaccharide. UDP-glucose: lipooligosaccharide (LOS) beta-1-4-glucosyltransferase catalyzes the addition of the first residue, glucose, of the lacto-N-neotetrase structure to HepI of the LOS inner core. LOS is the major constituent of the outer leaflet of the outer membrane of gram-positive bacteria. It consists of a short oligosaccharide chain of variable composition (alpha chain) attached to a branched inner core which is lined in turn to lipid A. Beta 1,4 glucosyltransferase is required to attach the alpha chain to the inner core.	2.6818e-52
NZ_CP040671.1\|WP_149821791.1\|1928540_1929554_-\|23S-rRNA-(adenine(2503)-C(2))-methyltransferase-RlmN	gnl\|CDD\|184688	PRK14457, PRK14457, 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN.	0

>NZ_CP040671.1|WP_149821794.1|1936409_1939943_-|methionine-synthase
MSFLEYLHAEPRRVIVFDGAMGTNLQAQNLTAEDFGGKAYEGCNEYLVISKPEAVAKVHRDFLAAGADVIETNTFGASSVVLSEYNLGDRAYEISKKAAELAKSVAAEFSTPEKPRFVAGSMGPGTKLPTLGHIDYDTLYTAFREQAAGLFDGGVDLFIIETCQDVLQIKAALNGVMAVFWERGERRPLMVSVTMEQQGTMLVGSEIGAALTILEPYPIDILGLNCATGPDLMTEHIRYLSQHSPFVISCIPNAGLPENIGGCAYYKLTPMELRLALTRFVEDFGVQVIGGCCGTRPDHIAALAEIAATLTPKARSPQRIPAAASIYSPQPYDQENSFLIIGERLNASGSKKCRDLLNAEDWDGLVALARAQVREGAHILDVNVDYVGRDGVRDMHELVSRLVTNVTLPLMLDSTEWQKMEAGLKVAGGKCLLNSTNFEDGEPRFYKVLELAKTYGAGVVVGTIDEEGMARTAEKKFAIAERAYKAALDYGIPPYEIFFDPLALPISTGIEEDRVNGRETIAAIRRIRAELPGCHILLGVSNISFGLNPAARQVLNSMFLHEAMQAGMDAAIVSAAKILPLAKIEPEHQEVCRDLIYDRRRFEGDVCVYDPLAELTRLFEGKTTQPDRSQVENLPIEERLKRHIIDGDRLGLEDTLAKALETYTPLEIINTFLLDGMRVVGERFGAGQMQLPFVLQSAETMKAAVAYLEPFMEKSATGDTAKGTVVIATVKGDVHDIGKNLVDIILTNNGYRVINLGIKQPVENIIQAYKEHQADCIAMSGLLVKSTAFMKENLEIFNERGITVPVILGGAALTPKFVYEDCRATYHGQVIYGKDAFADLHFMDRLMRAKAAGQWDDRQGFLDGTTVSPPEAEATPAPPSVTEPETPEVVDTRRSDAVALEIPRPTPPFWGIRHLKADQIPLSEVFAYLDLQALIAGQWQFRKPKDQDRATYDAFLAEKVYPILEEWKQRILAENLLHPELIYGYFPCQSEGNTVYLYDPQRVGDKSACVPERAIAQFTFPRQKRGRRLCIADFFAPVASGIIDVFPMQAVTVGEIATQVAQELFAANQYSDYLYFHGMAVQTAEALAEWCHARIRRELGCTPDPESIRDILAQRYQGSRYSFGYPACPNMQDQYTLLRLLESDRMGMYMDESEQLYPEQSTTAIICYHPTAKYFSA
>NZ_CP040671.1|WP_149820321.1|1935355_1936366_+|ADP-ribosylglycohydrolase-family-protein
MNAEYVVNGLLGACLGDALGVPVEFSTRWERDRDPVVDMRSYGTYYQPRGTWSDDSSLMLCLADALCGGFDLEQIAAKFLAWYTENLWTARGTVFDIGIATRRALMKLEAGNSPLTSGGTDEYSNGNGGLMRTLPLAFQYWRHRDQQRLLEEVHQVCGITHAHPRSQLACGIYVFFAIQLQQGMAPMRAYEATIAWANTTYNHDSFAAELHHFERILSGKLPHLDRGAIASGGYVVHTLEASLWCLLNSQSYLEAVLKAVNLGGDTDTTATVTGGIAALAFGLGDVPADWWQTLARYKDIVALGQQLGQAISENPYPLRGVPIEYTDPTEPVALED
>NZ_CP040671.1|WP_149821793.1|1933885_1935220_-|four-carbon-acid-sugar-kinase-family-protein
MTRPKIIVLDDDPTGSQTVHSCLLLTRWDVDTLCRGLTDPVPIFFILTNTRALPAEIAAEVTRTVCCHLKAAIAQTGTTDYMVVSRSDSTLRGHYPLETDVIAAELGPFDAHFLVPAFLEGGRITRDSQHYLLIAGQPVPVHETEFARDSVFGYHHSYLPDYVAEKTQGRIPAATVERFVLADVRNPETLRSRLSQLQGNVCGVVDAESQEDLDQFAAAVLELASQGKRFLFRSAASLLTALAQLPPQPTPPEAMATYCRPGRYGVVLVGSHVRKTTEQLTALLEEPDVFPIEVPVARLRDSGAAEPDIINEVLAAVDQAIASEKTPVIFTSREELTFADAATRLAFGQRVSEVLMAIVQQLPADLRYLISKGGITSNDVLSKGLNLATVRLLGQVIPGCSVVRTGADHPRFPELPVVLFPGNVGDREALRTVYHRFQGNGTAV
>NZ_CP040671.1|WP_149820318.1|1933415_1933790_-|c-type-cytochrome
MSLVNTVGVRSTVWRWLLPVLVVLVVGGGWGVSLLLPLRDPYIQSVRAAVGDPSRGEQIFILNCAGCHGIDGKGEVGPSLVQISHRRSQTKLIQQIISGNTPPMPKFQAQPQDMADLLSYLKTL
>NZ_CP040671.1|WP_149821792.1|1933114_1933336_-|DUF3148-domain-containing-protein
MGMEEAFAVGDRVRLVELPPYVKTAEPMPMLRPASILTLGEEGVILSQQPGNYWVVRLGRGAFLLEAKYLKRL
>NZ_CP040671.1|WP_149820316.1|1931961_1933101_-|glycosyltransferase
MAPLLSLCMIVKNEAHQLRRCLQSVRPWVDEIIVVDTGSTDETIAIAHEFTPHVHAVVWQADFAAARNASLAHASGEWVFYIDADEELVVTDPQWRDQLTAASAHIINQWSLLRREQARELNWSEFWNVRFGRRFPDLHFAGALHEQLYYRERQAVVGQLQGVYLIHHNQQTPDQFLAKLRDRNIPILEKMVQQGDRRLQNLVCLGDHYAACGDGDRAQTWYEQALEQIAPAVEQGVLPKDTTWLRHLLFWVSYRAFEAKDYETAQYYLSYGLRFFDRYPPLLYVAGLLIFELGLHRGALPYFHRCLDLFEQGTYDRAEPFDRQWMTTQPAYSLGFTYMTLQERDRAIAYFQKTLEFNPDYSPAQMYLQQLLTASANQG
>NZ_CP040671.1|WP_149821791.1|1928540_1929554_-|23S-rRNA-(adenine(2503)-C(2))-methyltransferase-RlmN
MALLGQSAVELKAWVEAQGQPGYRAQQLHQWLYQKGARSLQEITVFPKQWRDALAEVEIGRSQVRYRHDAQDGTVKLLLTLADGETIETVGIPSGDRLTVCVSSQVGCPMACDFCATGKGGYRRNLASHEIIDQVLTIQSEMERRVSHVVFMGMGEPLLNLKAVLQAVTCLNRDIGIGQRHITLSTVGIPQQIQRLAQYQLQITLAVSLHAPNQGLREQLIPSAKHYPLSQLIADCRAYVQQTGRRITFEYTVLAGVNDRPQHAEELAQLLRGFQSHVNLIPYNPITEAAYQRPTEQRLRQFLSQLQALGVTASIRRSRGLDRQAACGQLRQAQLSV
>NZ_CP040671.1|WP_149820314.1|1926615_1928487_-|NYN-domain-containing-protein
MKPELWFIAPVSAIALGGIATLIQPQQPLATLLGSGIGALAGAPLIEKNQRRSDRLIRDIHTVLCSSPETTELKALLLQELAQQRQQLTDLEQHLHQALPEALHPIHNEIMQRLETLKDNQRDAAVNTATAQQLEPLIEAIHAQSAALQTIQTLLQRPQPPATALKTAVLYDIENLVFNQGQRLDPAKVNELVSLDNVLEAIKSTIDLGEIAIQRAYGNWQNQILQALNAQLERSQIERVGVYGRNHNQRNAADIQLALDAIDLAYQHPDINTFVLISGDGGFGSIALRLRDYGKTVIGCAYRNAASDSFQRVCHQFIFLENPFIHSAPATNGRNGTPPPRQPNPENRTAPSSPRRLPIEPLNYEQIPPLAIQQRETEKLLELFSYYTTDATRRRELARGMVFNTVFLEMRSVAPQLDPLRFGFCKPSELVAYLTTHHQLQIGVAVNGQLGRTILCWRNNLPERYTLRTSSPQTIHTVSIYRGIFADEVAADFLLTQVGQWLIAHRPRNAPFERMINIILEQARRQQQRIGQQGIKRAIANYVKAGILTRTLHPSGDTLTLNPAIKDFDALVIALQKSFRQAVEERLSKIGETINEQVFAQAVPLKPLQLPPQSPEKAPESPS
>NZ_CP040671.1|WP_149820311.1|1925890_1926619_+|response-regulator
MKPRILIIDDDPAIADVLAINLQMAGYEVTKSLDGMQGQALAVQLSPDLILLDLMLPQVDGFTICQRLRRDPRTQDVPILMLTALSQTHNKVEGLNAGADDYLTKPFELEEMLARVRALLRRADRIPATAGHREILSYGPLTLVPERFEVSWFGKIIKLTRLEFELLHCLLQRHGQTVSPSEILKEVWGYDPDDDIETIRVHIRHLRTKLEPDPRSPRYIKTVYGAGYCLELPSHIEPPNAS
>NZ_CP040671.1|WP_149820309.1|1922973_1923729_-|serine/threonine-protein-phosphatase
MGDRAACRKDNRLVLIGDVHGHYEGLCRLLDLVSPRVGDRLYFLGDLVDRGPSSAAVVEFVRQCGYSVVRGNHEDMMLLTFEGKQINAAQLFVWSNSGGDETLASYTSTELLWQHLDWLHTVPFYEDLGDVFVVHAGLDPYLSLEQQGSQQCCWIREQFLGHPIPYFADKTIVVGHTITFTFPNVEAGQIVRGAGWIDIETGAYHRRSGWLTALDWTNQWVYQVNVLYGGTRQGELAQFLTDLRDVSYSIS
>NZ_CP040671.1|WP_149820325.1|1941796_1942465_-|glycoside-hydrolase-family-protein
MRFSRWLLAIALLVGMGYFFFGSRSSALWWYWYRWQPGQIAPLVMQGGDPYVRALMRTISASEANDANPYTLLYGGEHIQDLSQHPDRCIPIRRGPNQHLCTTAAGRYQFLTTTWAEKAARYHPQPPSWFWQGYSFAPEYQDQVVYRWLTDPAAWNADIPQLLREGRVQEVFALLSDTWTSLGYGLESNLITPHLEEIYQQLLAQELAASQTAHSPGRDALR
>NZ_CP040671.1|WP_149820327.1|1942475_1943159_-|NAD(P)H-binding-protein
MPSEGRAVKVAVVGATGRTGHRIVNALQASEHQAIAVVRNPAKAQGRWPTVEIRTADVTQPQTLPPALKECDAVICATGASPSLNPLEPLSVDYLGTKNLVDAAKAADVQQFILVSSLCVSQFFHPLNLFWLILYWKQQAERYLQESGLTYTIVRPGGLKETDDGGFPIIAPADTLFEGSIARSRVAEICVAALGEPSAYNKIFEVVSRPDQTPAAYPELFRSIAAV
>NZ_CP040671.1|WP_149820329.1|1943168_1943690_-|hypothetical-protein
MRAWIYLGAIALLTTLVVQNWQPLVSLRFLGQQTPALPLAAWLVVAALSGIVAGQCLLWLTAEAPAPVARPTPRSQPPEPELDASMRPPEDEPEIDTSDVEDWFSEPESAPREPEIQDRPRTTYSYQYRPSRKATAKAPPPPEEVVDAEYRILTPPPPKDAPPEDEEDWDIPL
>NZ_CP040671.1|WP_149820331.1|1943689_1944322_-|UbiX-family-flavin-prenyltransferase
MIAVVTSSSLPIVLGVTGASGLIYAVRAIKFLLRADYPIQLVASKAVHQVWQAEYGLTLPIQPDKQELFWREQAQVWEGSLTCHRPTDVAAAIASGSFRTLGMVILPCSMSTVAKLAAGLSSDLLERVADVHLKEHRPLVLVPRETPFSLIHLQNLTQLAMAGARIVPAIPAWYHRPQTIEDLVDFVIARALDQLGLDCVPLQRWQGPLS
>NZ_CP040671.1|WP_149820333.1|1944407_1944920_+|hypothetical-protein
MPMTAPDPAFSSPSEWAAVSPEVLGELFDAALLEGLVSSETPDLEALFQDLTPLDLKPAAGAIAPEQWQQLQAQHQQITQHLEETLTYLAKVKALAYQLQAVASEFVPTPKYRRRQPPPPHPLEYLTAELLRAIAHTQASLEPVYEPLHQLGETLNGTSTPQISEFPLEP
>NZ_CP040671.1|WP_149820335.1|1944916_1945816_-|polysaccharide-deacetylase-family-protein
MGRQWHLSVVLALFAASATLAADVPRFLSPSKFWGQLVYQVKPLKPEKVVALTFDDGPWGTSTRQVLQILKEEEVKATFFVLGKHALMYPNIIADIVKAGHAVGNHSWSHPYQPVDPEVAKQEIENTSALIAKQSQAQTRLFRPPGGNLTTGLVDYAKSKNYAIILWSVDPQDTRPHTTAAQIVERTLKAVRSGSIILLHDGGGDRATTRKALPTLIRRLRQKGYRFVTVPELLQLAVKASTPKPQPTITPTPTPTPTAEPSPTPVPTPESLPSPEPIPIPPSSIPGGPQLEPPRMPPN
>NZ_CP040671.1|WP_149820337.1|1945840_1946770_-|glycine--tRNA-ligase-subunit-alpha
MAWAKPSAASTSKPMYFQDVIATLHQFWAAQGCLIAQPYDVEKGAGTKSPHTFLRALGPEPWAVAYVEPCRRPGDGRYGENPNRYQYYYQYQVLIKPSPDNIQEIYLESLRALGIRPQEHDIRFVEDNWEDAAVGAWGVGWEVWLDGMEVTQFTYFQQCGGLDCRPVSIEITYGLERLTMYLQEVDAIASIRWNSTLTYGDVHLQGEIEQSTYNFEASDPERLFALFSLYQQEAEQLLEKQLVLPSLDYVLKCSHTFNLLDARGVISVAERTRYIGRIRGLARRVAQAYVQQREALGFPLLKEPTPIAP
>NZ_CP040671.1|WP_149820339.1|1946732_1947473_-|phosphoadenosine-phosphosulfate-reductase
MLSKTVLTPPMAASVSFDLDALNQRFEGAHPREILAWAVAEIPQGLVQTSAFNVDDMMITDLLYRDLRPNPPVPVLFLDTLHHFPETLEFVQQAKEKYGLDLRTYKTPDVDSREAFAARYGDKLWETNVEQFHHLTKIEPLQRGLAELNTVAWITGRRRDQAVTRANMPYVELDKQGRLKINPLAAWTRKQTWTYVMEHGVIYNPLHDRGYASIGDEPLTTPVAEGEDERAGRWRGMGKTECGIHI
>NZ_CP040671.1|WP_149820342.1|1947559_1947754_-|hypothetical-protein
METRQVVGTWPARLEDRYYWVVQPEIVVAPGRYAVLTSSPQTWSYNATSKNAGMTWIEGYPMPR
>NZ_CP040671.1|WP_149820343.1|1947757_1948117_-|hypothetical-protein
MHRVNIWHLTSREMYYFQVLIDSPCVRQAGGGQAAQRVVTSFTVEPDSTVTRPAAPTPTYSHPPQMTPRIVFSNNNPHAVASCPPEARILVLDRPYHFSKITTYHWNGGRGAPAGQVML

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Crispr_ID: NZ_CP040671_7

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP040671_7

2607404-2607495

Orphan

Consensus_repeat	Method
GATCAACTGACTGTCACTGTTGCAGAACT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP040671_7

>merge|NZ_CP040671|7|2607404-2607495|CRISPRCasFinder
GATCAACTGACTGTCACTGTTGCAGAACTGGCCGAAGCCCAGAAGCGCACCGAAGAACGGGTGGATCAACTGACTGTCACTGTTGCAGAACT

>NZ_CP040671|7|7|2607404-2607495|CRISPRCasFinder
GATCAACTGACTGTCACTGTTGCAGAACT	GGCCGAAGCCCAGAAGCGCACCGAAGAACGGGTG
GATCAACTGACTGTCACTGTTGCAGAACT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP040671.1\|WP_149821502.1\|2616898_2619199_-\|1,4-alpha-glucan-branching-protein-GlgB	unknown	unknown	gnl\|CDD\|235445
NZ_CP040671.1\|WP_149821504.1\|2619282_2620380_-\|quinone-dependent-dihydroorotate-dehydrogenase	unknown	unknown	gnl\|CDD\|235388
NZ_CP040671.1\|WP_149821474.1\|2598369_2601147_-\|response-regulator	unknown	unknown	gnl\|CDD\|223716
NZ_CP040671.1\|WP_149821493.1\|2612029_2612998_+\|protochlorophyllide-reductase	unknown	unknown	gnl\|CDD\|180983
NZ_CP040671.1\|WP_149821863.1\|2596071_2596509_+\|single-stranded-DNA-binding-protein	unknown	unknown	gnl\|CDD\|239942
NZ_CP040671.1\|WP_149821489.1\|2610105_2610957_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|273187
NZ_CP040671.1\|WP_149821495.1\|2613001_2613484_+\|DUF3828-domain-containing-protein	unknown	unknown	gnl\|CDD\|372360
NZ_CP040671.1\|WP_149821470.1\|2596753_2597059_-\|DUF559-domain-containing-protein	unknown	unknown	gnl\|CDD\|238509
NZ_CP040671.1\|WP_149821478.1\|2603996_2604539_-\|chemotaxis-protein-CheW	unknown	unknown	gnl\|CDD\|223905
NZ_CP040671.1\|WP_149821481.1\|2604970_2606206_-\|response-regulator	unknown	unknown	gnl\|CDD\|381129
NZ_CP040671.1\|WP_149821472.1\|2597879_2598377_-\|chemotaxis-protein-CheW	unknown	unknown	gnl\|CDD\|366716
NZ_CP040671.1\|WP_149821506.1\|2620430_2620997_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040671.1\|WP_149821498.1\|2613566_2615009_+\|NADP-dependent-phosphogluconate-dehydrogenase	unknown	unknown	gnl\|CDD\|236453
NZ_CP040671.1\|WP_149821483.1\|2606474_2607197_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|273187
NZ_CP040671.1\|WP_149821487.1\|2608025_2609807_-\|iron-uptake-porin	unknown	unknown	gnl\|CDD\|335962
NZ_CP040671.1\|WP_149821491.1\|2610969_2611857_-\|lipoyl-synthase	unknown	unknown	gnl\|CDD\|237261
NZ_CP040671.1\|WP_149821468.1\|2594594_2595893_-\|FAD-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|224172
NZ_CP040671.1\|WP_149821479.1\|2604541_2604904_-\|response-regulator	unknown	unknown	gnl\|CDD\|381093
NZ_CP040671.1\|WP_149821476.1\|2601149_2603972_-\|HAMP-domain-containing-protein	unknown	unknown	gnl\|CDD\|214599
NZ_CP040671.1\|WP_149821500.1\|2615087_2616902_+\|ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|224055

Protein	Function_ID	Function_description	E-value
NZ_CP040671.1\|WP_149821502.1\|2616898_2619199_-\|1,4-alpha-glucan-branching-protein-GlgB	gnl\|CDD\|235445	PRK05402, PRK05402, 1,4-alpha-glucan branching protein GlgB.	0
NZ_CP040671.1\|WP_149821504.1\|2619282_2620380_-\|quinone-dependent-dihydroorotate-dehydrogenase	gnl\|CDD\|235388	PRK05286, PRK05286, quinone-dependent dihydroorotate dehydrogenase.	0
NZ_CP040671.1\|WP_149821474.1\|2598369_2601147_-\|response-regulator	gnl\|CDD\|223716	COG0643, CheA, Chemotaxis protein histidine kinase and related kinases [Cell motility and secretion / Signal transduction mechanisms].	2.50844e-162
NZ_CP040671.1\|WP_149821493.1\|2612029_2612998_+\|protochlorophyllide-reductase	gnl\|CDD\|180983	PRK07453, PRK07453, protochlorophyllide reductase.	0
NZ_CP040671.1\|WP_149821863.1\|2596071_2596509_+\|single-stranded-DNA-binding-protein	gnl\|CDD\|239942	cd04496, SSB_OBF, SSB_OBF: A subfamily of OB folds similar to the OB fold of ssDNA-binding protein (SSB). SSBs bind with high affinity to ssDNA. They bind to and protect ssDNA intermediates during DNA metabolic pathways. All bacterial and eukaryotic SSBs studied to date oligomerize to bring together four OB folds in their active state. The majority (e.g. Escherichia coli SSB) have a single OB fold per monomer, which oligomerize to form a homotetramer. However, Deinococcus and Thermus SSB proteins have two OB folds per monomer, which oligomerize to form a homodimer. Mycobacterium tuberculosis SSB varies in quaternary structure from E. coli SSB. It forms a dimer of dimers having a unique dimer interface, which lends the protein greater stability. Included in this group are OB folds similar to Escherichia coli PriB. E.coli PriB is homodimeric with each monomer having a single OB fold. It does not appear to form higher order oligomers. PriB is an essential protein for the replication restart at forks that have stalled at sites of DNA damage. It also plays a role in the assembly of primosome during replication initiation at the bacteriophage phiX174 origin. PriB physically interacts with SSB and binds ssDNA with high affinity.	4.37328e-20
NZ_CP040671.1\|WP_149821489.1\|2610105_2610957_+\|hypothetical-protein	gnl\|CDD\|273187	TIGR00634, DNA_repair_protein_RecN, DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair. [DNA metabolism, DNA replication, recombination, and repair].	1.18162e-07
NZ_CP040671.1\|WP_149821495.1\|2613001_2613484_+\|DUF3828-domain-containing-protein	gnl\|CDD\|372360	pfam12883, DUF3828, Protein of unknown function (DUF3828). This is a family of bacterial proteins of unknown function.	2.47676e-16
NZ_CP040671.1\|WP_149821470.1\|2596753_2597059_-\|DUF559-domain-containing-protein	gnl\|CDD\|238509	cd01038, Endonuclease_DUF559, Domain of unknown function, appears to be related to a diverse group of endonucleases.	4.08508e-29
NZ_CP040671.1\|WP_149821478.1\|2603996_2604539_-\|chemotaxis-protein-CheW	gnl\|CDD\|223905	COG0835, CheW, Chemotaxis signal transduction protein [Cell motility and secretion / Signal transduction mechanisms].	4.62269e-21
NZ_CP040671.1\|WP_149821481.1\|2604970_2606206_-\|response-regulator	gnl\|CDD\|381129	cd17602, REC_PatA-like, phosphoacceptor receiver (REC) domain of PatA and similar domains. Nostoc sp. (or Anabaena sp.) PatA is necessary for proper patterning of heterocysts along filaments. PatA contains phosphoacceptor REC domain at its C-terminus and an N-terminal PATAN (PatA N-terminus) domain, which was proposed in a bioinformatics study to mediate protein-protein interactions. REC domains function as phosphorylation-mediated switches within response regulators, but some also transfer phosphoryl groups in multistep phosphorelays. Some members of this group may have an inactive REC domain, lacking canonical metal-binding and active site residues.	1.3463e-40
NZ_CP040671.1\|WP_149821472.1\|2597879_2598377_-\|chemotaxis-protein-CheW	gnl\|CDD\|366716	pfam01584, CheW, CheW-like domain. CheW proteins are part of the chemotaxis signaling mechanism in bacteria. CheW interacts with the methyl accepting chemotaxis proteins (MCPs) and relays signals to CheY, which affects flageller rotation. This family includes CheW and other related proteins that are involved in chemotaxis. The CheW-like regulatory domain in CheA binds to CheW, suggesting that these domains can interact with each other.	1.02245e-09
NZ_CP040671.1\|WP_149821498.1\|2613566_2615009_+\|NADP-dependent-phosphogluconate-dehydrogenase	gnl\|CDD\|236453	PRK09287, PRK09287, NADP-dependent phosphogluconate dehydrogenase.	0
NZ_CP040671.1\|WP_149821483.1\|2606474_2607197_+\|hypothetical-protein	gnl\|CDD\|273187	TIGR00634, DNA_repair_protein_RecN, DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair. [DNA metabolism, DNA replication, recombination, and repair].	0.00355473
NZ_CP040671.1\|WP_149821487.1\|2608025_2609807_-\|iron-uptake-porin	gnl\|CDD\|335962	pfam04966, OprB, Carbohydrate-selective porin, OprB family.	1.30345e-20
NZ_CP040671.1\|WP_149821491.1\|2610969_2611857_-\|lipoyl-synthase	gnl\|CDD\|237261	PRK12928, PRK12928, lipoyl synthase; Provisional.	0
NZ_CP040671.1\|WP_149821468.1\|2594594_2595893_-\|FAD-dependent-oxidoreductase	gnl\|CDD\|224172	COG1252, Ndh, NADH dehydrogenase, FAD-containing subunit [Energy production and conversion].	4.37606e-38
NZ_CP040671.1\|WP_149821479.1\|2604541_2604904_-\|response-regulator	gnl\|CDD\|381093	cd17538, REC_D1_PleD-like, first (D1) phosphoacceptor receiver (REC) domain of response regulator PleD and similar domains. PleD contains a REC domain (D1) with the phosphorylatable aspartate, a REC-like adaptor domain (D2), and the enzymatic diguanylate cyclase (DGC) domain, also called the GGDEF domain according to a conserved sequence motif, as its output domain. The GGDEF-containing PleD response regulators are global regulators of cell metabolism in some important human pathogens. This model describes D1 of PleD and similar domains. REC domains function as phosphorylation-mediated switches within response regulators, but some also transfer phosphoryl groups in multistep phosphorelays.	1.93125e-37
NZ_CP040671.1\|WP_149821476.1\|2601149_2603972_-\|HAMP-domain-containing-protein	gnl\|CDD\|214599	smart00283, MA, Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Thought to undergo reversible methylation in response to attractants or repellants during bacterial chemotaxis.	7.99042e-68
NZ_CP040671.1\|WP_149821500.1\|2615087_2616902_+\|ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|224055	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms].	2.8037e-180

>NZ_CP040671.1|WP_149821483.1|2606474_2607197_+|hypothetical-protein
MTSALEEKLRTAFSPEQAHLLAEVIREAYDDLVKAKDFNELKAIVADLAQAQKRTEERVDQLTLTVAELAQAQKRTEERVEELAAAQKRTEERVDQLAAAQERTERAVKQLARQVGGLSEALGGSLEDLALEVVPEILEYRWGMEIEFCDRDTLPLRNGEYEFDLVIRGQVAGRPVLVLGEVKSNFTESEVERFLNLVAQVEAPEEIRPLFFGYRVERAAKALIRDRDAVMVTTRGKYFP
>NZ_CP040671.1|WP_149821481.1|2604970_2606206_-|response-regulator
MMTSDRGFSGGGTPQFTETLQPERLLQQLSTSGGTGCFRVSVQGQQWFLYFDQGSIVYATHTIEPGDRFERHLRQLSQSVPALDRELRAQVRQQWEQANTPTPIYEYESLRWLLTQDIITPEHFSRLVEGLIVEVLESFLYLKSGHHQLVPYVEVPIVSRFDATRLIQQCKSRIQQWLSLGHKIVSPFQRPYFFSGAQVNLTPEQQQRLGSMLRGFSFRHLAVLMNQNEIALVRSLLPLIDKGAVVVREPQHPFDLLPSFDASLWQETTPTVTEESGDLGSGFFTSKVPNRTYRIICIDDSPTMLNEIKRFLADDAFEVIALNDSVKALMEVMRLNPDLILLDVGMPNIDGYKFCKVIRNHERFKSVPIIMVTGNTGLIDRAKARLVGATDYMTKPFTQAELLKMVFQYLT
>NZ_CP040671.1|WP_149821479.1|2604541_2604904_-|response-regulator
MTTVLVVEDTPSEMALITSFLKDSGYTVIAATDAKEALEKVTQYKPDVVVTDVVMPGMSGFELCRSLKKNPETEKLPIVVCTSKNQELDRLWAMKQGADAYVTKPFSREDLLRALKSVVV
>NZ_CP040671.1|WP_149821478.1|2603996_2604539_-|chemotaxis-protein-CheW
MLGAAPWLNHGEGRGDSPKGTLRDRPQGAPYLRLVIHDQFTALLPMTEIQQVLVIPPQQLTVIPNMAAVVMGLLNFRNRIVWVLDLAHLLNLEPLDADISVLTIALLHTPKGYLGLALKEVRGIVRLPEGAIQSPVGTVSAALVPYLKGCCRLGEELFFILDGAAIAERSCSSVLAVDVG
>NZ_CP040671.1|WP_149821476.1|2601149_2603972_-|HAMP-domain-containing-protein
MPTMTTAKPSLDIPPLPPSVLNYQLPPLEEKKATTNGKSPEQPAFPPPPPRKFWGLRPKLITSAVALATLPMIGVGLAANEVARQQLMEQVLQLQQQEASSAALQFDNYLRDRRGDARVLASVLNNRYSSEIQQRDRAQLQAVLDQFLDAYVAYDSAAIIANNGQGTVIAQSSAGNRLANNILQNQEYFKLAIQTRGAVLTVEPTLSLPERPLGMFLAVPLINPQNQQIIAVLRLRVPKSSIQQFLKTYDRTQQQSFYLVEPGGTIFAASIPALQGKPLEEVFPKLAQSRDNTSASTLTERRRSDGESQILSYTTVSQPFASIVLGTDQDYALKPLRNLTWTLLSGVVVTAIVAGAIAIYLSDRGIQPLLRATKAVTKIGEGDLQTRLPVEGDDELATLSRTINQMAEQLEQSLIEARLAAQRAQQLRDSVFRLTQQSDRQQILDNLVNEGRHLLGCDRVIFYEFDENYVGKVVAESVAVGWPQALEQVIDDPCFRQNWVDAYTKGRVQATADILNAGLTECHLKQLAPLKVRANLVVPVLVEKKLVALLIAHQCSEPRQWQQPEIDAFLQLANQAGLVLERSKFLEQTTAAQKEAERLAQEQQQRTERIQMQLINLLTEVEAASQGDLTVRADITADEIGTVADIFNSLIESLRDVVVQVKATTEKVNTALLADETAMTELAEESLRQAKKVKRMLEAVEAMSTSIESVANSANEAAEVARKASERAVTGGETMDATVDSILHLRETVAETAKKVKRLGESSQQISKVISLINQIALQTNLLAINASIEAARAGEEGRGFAVVAEEVGELAARSAAATREIEQIVETIQMETHEVVSAMETGTAQVVEGTRLVEVAKQNLQEIVQVSQHIDELVQSISQATVSQARTSNTVNTLMKDFAKVSEGMSATSKQISESLQATVDIAQELQNSVNIFKVTAEG
>NZ_CP040671.1|WP_149821474.1|2598369_2601147_-|response-regulator
MPEPGVEETIRLQFLEEAQDYLQTIEAGILELSHQPGVIDAVLRAAHSIKGGAAMMGFMSLSELAHRLEDFFKVLKSRPCDDVEVQHLLLKAVDQLQAVITLHRQGVEPNEGWWRTQVEPILDELQGRLGDPTAEDDLALLSGDDGQQMRVVLFETEVEACLQRLETVLQTSGQPCLKEELAIAAQELEGLGQMLELPQFAEFCASVSAYLEQPNCDVSEAGAHIVQQWRRCQALVITGQLEALPTRLEIPETDDEDQTIIDLSLANLNQELGVEDFASAEVGAFSLGDLLSPPPTPTAAPSPAPEAETTPVTPQPQEPKEMTVRVPGHQLDQLSDLMGELLIECNGLDLQRERLHDLLVGLKQKVRALERANFRLRAEYDRVSAPHHFNPQNQHGFDVLEFDRYTDVHLLSQEVMETIVQVQEITSDLELSLEDTERTGRDLNRTAKQLQARFTQVRMRPFADLANRYPRLIRELSREHGKNVNLEIEGSHVLIDRTVLSVLADPLLHLVRNAFDHGIEPAEERQALGKPAAGTITLKAAYRGNQTVITVADDGRGLNPEKIRQTARRLGLARDWLETASDRDLWQLIFEPGFSTASQVTSLSGRGVGMDVVRTNLRQIRGDIQIHSTPGQGTRFIITIPYTLSVVRVLLVEAAGMLLAVPTEEIEEMVLADRYPPIETLGSTLIDWEGYLIPLIDLTQIFHFQRPYRPVEMEGAPTINEPTLMIISQGDSALALRGDRYWSEQEVTIRQVEGELALPQGFSGCTILGNGRIVPLLDPLALFDWSEQESSHAPVASPVAPSQDTVLVVDDSVNVRRFLASTLEKAGYRVEQAKDGQEAIDKLQGGLHVNAVICDIEMPRLDGFGVLTQIRRIPQCQNTPVMMLTSRTGQKHRQLAERLGAAAYFSKPFRESDLLATLDQLIRHA
>NZ_CP040671.1|WP_149821472.1|2597879_2598377_-|chemotaxis-protein-CheW
MLKSRRRRQSQPVVLEQFLTFIVRQEQFAVPMAQAYRVIPLPPIHGDPHQRGIGLVTYENHEILVIDIGCCLFDDPLSTSETQKLKFLLILQPRLEGEWLGLPLTEPPVIERIPRDAIHPIPSNYLHWGSIHSVSSLMVSSQEDQELPPIFIVDIEQVLHTLKTR
>NZ_CP040671.1|WP_149821470.1|2596753_2597059_-|DUF559-domain-containing-protein
MAIRKRMTRSEVILWQHLKGKQMNSYDFDRQRPIDEYVVDFYCKKLKLAIEVDGSSHDSEEAQEQDCYRQQRLEALGVRFLRFRDEEVRHNVEAVLEAIAT
>NZ_CP040671.1|WP_149821863.1|2596071_2596509_+|single-stranded-DNA-binding-protein
MNSCVLFAEVIQAPELRYTQENQMAVATMVVQFASLRSEEPPMSLRTVAWGNLGQKMQAECKVGDRLILEGRLKMDTIDRPEGFKEKRAELVVSRFYTVDGNIVDHPAQPAATPMATPAATAPMTPKVAPPPPEPEDINLDEVPF
>NZ_CP040671.1|WP_149821468.1|2594594_2595893_-|FAD-dependent-oxidoreductase
MARVVVLGAGIGGLSTAYELRHRLGDRHQVVLVSDVNRFTFIPGLVAVALGHHSLERLQVPLGIVSRRHGLQWVQGKVQQIDPKAKKVYLPEQTLDYDYLVIATGAELALDLIPGLGVHSYSVCTPAHAVAAHRAWQAFLKDPKDLVVGAAPGASCFGPAYEFLFLAEYALRRHRLRDRVKITFITPEPYIGHLGIGGLANSDQLTLDLIAQRGIETITNAEITAIEPHRILLRDGRVIPFGYSMILPPFRGPAFVRASGLGNEKGFLPLLPTLQHPDYPEIYGVGISVHLPPIEVTPVPMGLPKTGQMTEEMAIAASHNIAVALGELAADPVVPTLDALCFADFGDTGIAYIAAPVIPETLGQKRRLAYAIQGLWVSWVKAAFERYFLLKMRWGLSVPWFEQWGLRLFFGLSLVRPLQPPLVSEQQPFAKV
>NZ_CP040671.1|WP_149821487.1|2608025_2609807_-|iron-uptake-porin
MRSNIVKKTYLLAGSLSLLGVVAGANIATANEPANFENLIAAEPQNLAVSEALPAPNTIADASSTITSVNQLLANEESMGQVTSVSQLSDVRPTDWAYQALASLVEKYGCIAGYPDGTFRGNRAATRYEMAAALNACLDVISDRFATKEDLATLQRLMDEFAAELATLRGRVDNLEARTAALEATQFSTTTKLTGTAVMSVQYGGRPSSPNSSVTPSPFGLAPGRTNPTVISAVLLNLNTSFTGTDLLQTTLSTGNGGRDAISTYGIGLQTSSTLDPAGTTDIFTAPFPYASPSQYYWSNFGPNVELYRLAYTFKPTQDITITAGTRFYPSDIIDTNSWANSPTSDFGTYFFLNNPFIVPYAMNYLGGAGVAIQWNPNEGPFTVRALYLAAEPGRANSGIAPPSPGGGFAGDPYQASLELEYANTFGNGRNSYVVKLQGTYSKTYGIEAQAGGINFELNLGRLGIFGRAGVAGIPNGYFPNVSPLPFSIFGFPAAGMMAYNFMAGIGYKDLLVPGSVLAAAAGAPFINSAPSAGFINNANQVNIEAFYKFPISDNISITPIFTAIINPNNTNGGGVISGQPILQGVIRTTFTF
>NZ_CP040671.1|WP_149821489.1|2610105_2610957_+|hypothetical-protein
MTSVLEEKLRAAFPPEQAHLLAEVIHEAYNDLVKARDFNELKSIVGELAQAQKRTEEQVEELAQAQKRTEERVEELAQAQKRTEERVEELAQAQKRTEERVEELAQAQKRTEERVEELAQAQKRTEERVDQLAVAVAELAEAQKHTERAVKQLARQVGGLSEALGGSLEDLALEVVPEILEYRWGMEIEFCERDTLPLRNGSYEFDLVIRGQVHGEPILVLGEVKSNITESEVERFLNLVAQVEATEEIRPLFFGYRVERAAKALIRDRGAVMVTTRGKYFPE
>NZ_CP040671.1|WP_149821491.1|2610969_2611857_-|lipoyl-synthase
MTICQPLPPWLRKPLGKASELSTVQRLVRHYGIHTICEEGRCPNRGECYAQKTATFLLLGATCTRACAFCQVEKGHAPAAVDPEEPAKIAAAVASLGLRYVVLTSVARDDLPDQGAGQFVVTMQAIRQRCPSTEIEVLTPDFRMDRGRVSQRDCIAQIVAAQPACYNHNLETVRRLQGPVRRGATYESSLRVLATVKELNPHLPTKSGLMLGLGETEAEVIQTLKDLRAVGCDRLTLGQYLPPSLNHLPVVKYWTPEEFNTLGKIARELGFSHVRSGPLVRSSYHAADAAPTQEA
>NZ_CP040671.1|WP_149821493.1|2612029_2612998_+|protochlorophyllide-reductase
MSDQPRPTVIITGASSGVGLYATKALANRGWHVVMACRNLEKAEQAAKDLQIPPQAYTILHLDLSSLASVRGFVESFRALNRPLRALVCNAAVYYPLLKEPIYSVDGYEISVATNHLGHFLLANLLLDDLKKSPESDKRLVILGTVTANRKELGGKIPIPAPPDLGNLEGFEKGFKKPIAMINGKPFKSGKAYKDSKLCNMLTTRELHRRFHDSTGIVFSSLYPGCVADTPLFRHHFPLFQKLFPLFQKNITGGYVSQELAGERVAMVVADPEFRQSGVHWSWGNRQKEGRKAFVQELSAEGSDEQKARRLWELSEKLVGLA
>NZ_CP040671.1|WP_149821495.1|2613001_2613484_+|DUF3828-domain-containing-protein
MQRWLPLGVSLALVIETGAIARPAPETVVSQFYQWWVRNQDQGRQRLSQQRAVFTPDLYQQLMQAFRRQPRDGVWLDFDPFSFTQVSTQGVQVRNVRRSPNNPQVAEVDIEVMAGLRGRSGTPVPIKVLLRQGSDRWQIDNLIYLNTWDNLRCLLRDINR
>NZ_CP040671.1|WP_149821498.1|2613566_2615009_+|NADP-dependent-phosphogluconate-dehydrogenase
MSQQDFGVIGLAVMGENLALNVERNGFSVAVYNRTPARTEAFMAERAAGRRFKATYSLEEFVASLSRPRRILAMVKAGKPVDDLIQQLKPLLEPGDILIDGGNSLYTDTERRVAEMEAAGLCFFGMGVSGGEEGALNGPSLMPGGSREAYQALEPILTKIAAQVDDGPCVTYIGPGGSGHFVKMVHNGIEYGDMQLIAEAYDLLKNLLGLNHQQLHEVFKRWNETPELNSFLIEITSQIFTYIDPETHLPLVDVIVDAAGQKGTGRWTVESALEMGVAIPTITAAVNARIMSSIKAERMAAAQVLPGPVAHFSGNTEEFIGKIRDALYCSKICSYAQGMALIAKGSQELFDNQLNLGEIARIWKGGCIIRAGFLNKIKQAYSENPQLANLLLAPEFRQTILDKQAAWREVLVEATRAGIAVPAFGASLEYFDSYRRDRLPQNLTQAQRDFFGAHTYERIDKPGTFHTEWVPIQEAGKASV
>NZ_CP040671.1|WP_149821500.1|2615087_2616902_+|ATP-binding-cassette-domain-containing-protein
MLARDHPALWGGQEALHPFLRLLHHSQRYQRQVGLASLYSILNKIFDLAPPVLIGIAVDLVVKRQDSLFARWGLVTFEQQLLALAGLSFVIWSLESLFEYAYARSWRNLAQQIQHDLRLETYAHVQEMDLAFFEERSSGVLLSILNDDINQLERFLDGGANEVLQVTTTVLVIGGIFFYLAPNVAIWGMLPMPFILWGSVIFQRRLAPRYADVREKAGRLNERLANNISGIQTIKSFTAEAYELERLRWDSEAYQQSNRRAIRLSAAYIPLIRFVILFGFTGTLVLGGFAAFQGRLDVGAYSTMVYLIQRLLWPLTRLGETLDQYQRAMASTQRVLNLLETPIAICTGDRPLDPRHVKGEVRFESVSFAYAGRAPVLKNVSLHVPAGQTIAIVGSTGSGKSTLVKLLLRFYEVQEGRILIDGVDIREYRLRDLRRAIGWVSQDVFLFHGTAFENIAYGSPGATLSDVIHAAKLAEAHDFIEQLPQGYDTVVGERGQKLSGGQRQRLAIARALLKDPPILVLDEATSAVDNETEAAIQRSLAHITAHRTTIAIAHRLSTIRHADCIYVLEHGEIVEQGTHKALLAQQGVYYGLWQVQAGQLLPEG
>NZ_CP040671.1|WP_149821502.1|2616898_2619199_-|1,4-alpha-glucan-branching-protein-GlgB
MTVSPEQIDRIVSNQHHDPFEILGCHQISENGQSVWAVRAYLPNAERVSVLCPEQRQEYPMTPVHHPHFFECRIPLPELNNYQLKIYENGHERVIYDPYAFRSSKLTDFDIHLFAEGNHHRIYEKLGAHLLTVDGVAGVYFAVWAPNARNVSVIGNFNHWDGRKHQMARRGNGIWELFIPGLGVGEHYKYEIKNQDGHIYEKSDPYGFYQEPRPKTASIVTDLNSYEWGDNDWLEKRRHTDPLTQPISVFEVHLGSWLHASMEDPPIGADGQPQEPVQVAELKPWARFLTYRELAAKLIPYVKELGYTHIELLPVAEHPFDGSWGYQVTGYYAPTSRYGSPQDFMYFVDQCHQNGIGVIVDWVPGHFPKDGHGLAFFDGTHLYEHADPRKGEHKEWGTLVFNYGRHEVRNFLVANALFWFDKYHIDGIRVDAVASMLYLDYARKEGEWVPNEYGGRENLEAANFLRQVNHVIFSYFPGILSIAEESTAWPMVSWPTYMGGLGFNLKWNMGWMHDILDYFSMDPWFRQFHQNNVTFSMWYHHSENFMLALSHDEVVHGKSHIIGKMPGDRWQKFANLRCLFAYMFTHPGKKTMFMGMEFAQWSEWNVWSDLEWHLLQYEPHQQTKRFFEDLNRLYRSQPALYTQDFKPEGFEWIDCSDNRHSVVSFIRWDKDYQDFVVVVCNFTPQPHSHYRIGVPEHGFYSELFNSDAREYGGSNMGNLGGKWADEWPYHHRRYSLDLCLPPLAVLILKLDREKTAAERARYNLTP
>NZ_CP040671.1|WP_149821504.1|2619282_2620380_-|quinone-dependent-dihydroorotate-dehydrogenase
MAIDPYRHLLRPLLFSGLQADPEFLHQQFISLCGWLNQDRALSTWLRQQLQQRYALSDPRLERQMWGLRFPNPIGLAAGFDKNGVAPSVWSAFGFGFAELGTVTWYPQPGNPRPRLFRLTADRAAINRMGFNNAGAEAMAALLERSPPPTIPIGINLGKSKITPLEAAKEDYLASFRRLYPLGDYFVINVSSPNTPGLRDLQAKEQLEPILETLQTANHSHKPLLLKIAPDLSWEQIAAILDLIQTYELAGIVATNTTVAREGLKTQMIPQTGRSPAAEAGGLSGAPLRDRATAVIRFIHKETQGTLPIIGVGGIFTPEDVIEKLAAGATLVQLYTGWIYQGPSLLRELLQGLLAHAADQEKPEK
>NZ_CP040671.1|WP_149821506.1|2620430_2620997_-|hypothetical-protein
MIALGAIAMTETPQTPPPEEPTAKASRPARRSNPPAKENSGQMVSLAEKTALAPAGTTTASDIVVWQTFNSAGLRPIEASPVQVVHMIKDAGERPVLSSGLQIYDSINSAGIRPIVATNFRVVETLNIMGVRPVAADDFEIVETVNWMGIRPITTSGLHIAETYYSAGERPVASNIIDDSPVLMGYLD

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP040671_4	4.1\|1241326\|34\|NZ_CP040671\|CRISPRCasFinder	1241326-1241359	34	MN693774	Marine virus AFVG_250M641, complete genome	33155-33188	5	0.853
NZ_CP040671_1	1.2\|473643\|34\|NZ_CP040671\|CRT,PILER-CR,CRISPRCasFinder	473643-473676	34	MK249871	Vibrio phage LP.2, complete genome	27332-27365	8	0.765
NZ_CP040671_2	2.17\|543010\|34\|NZ_CP040671\|PILER-CR,CRISPRCasFinder,CRT	543010-543043	34	NZ_MF078634	Acinetobacter pittii strain HGSA488 plasmid pLS488, complete sequence	43095-43128	8	0.765
NZ_CP040671_2	2.17\|543010\|34\|NZ_CP040671\|PILER-CR,CRISPRCasFinder,CRT	543010-543043	34	NZ_CP037425	Acinetobacter johnsonii strain M19 plasmid pFM-M19, complete sequence	50994-51027	8	0.765
NZ_CP040671_2	2.17\|543010\|34\|NZ_CP040671\|PILER-CR,CRISPRCasFinder,CRT	543010-543043	34	NC_041928	Staphylococcus phage phiIBB-SEP1, complete genome	129023-129056	8	0.765
NZ_CP040671_2	2.17\|543010\|34\|NZ_CP040671\|PILER-CR,CRISPRCasFinder,CRT	543010-543043	34	MF417868	Uncultured Caudovirales phage clone 7AX_1, partial genome	15495-15528	8	0.765
NZ_CP040671_2	2.17\|543010\|34\|NZ_CP040671\|PILER-CR,CRISPRCasFinder,CRT	543010-543043	34	KP027447	Staphylococcus phage phiIPLA-C1C, complete genome	131921-131954	8	0.765
NZ_CP040671_4	4.1\|1241326\|34\|NZ_CP040671\|CRISPRCasFinder	1241326-1241359	34	NC_019544	Deep-sea thermophilic phage D6E, complete genome	3756-3789	8	0.765
NZ_CP040671_2	2.20\|543226\|32\|NZ_CP040671\|PILER-CR,CRISPRCasFinder,CRT	543226-543257	32	KY963370	Bacillus phage Negev_SA, complete genome	11104-11135	9	0.719
NZ_CP040671_2	2.20\|543226\|32\|NZ_CP040671\|PILER-CR,CRISPRCasFinder,CRT	543226-543257	32	KY963369	Bacillus phage Tavor_SA, complete genome	11331-11362	9	0.719
NZ_CP040671_3	3.26\|1240414\|33\|NZ_CP040671\|CRISPRCasFinder,CRT,PILER-CR	1240414-1240446	33	NC_027348	Delftia phage RG-2014, complete genome	22213-22245	9	0.727
NZ_CP040671_4	4.1\|1241326\|34\|NZ_CP040671\|CRISPRCasFinder	1241326-1241359	34	MN693829	Marine virus AFVG_250M529, complete genome	4455-4488	9	0.735
NZ_CP040671_4	4.1\|1241326\|34\|NZ_CP040671\|CRISPRCasFinder	1241326-1241359	34	MN694621	Marine virus AFVG_250M652, complete genome	9836-9869	9	0.735
NZ_CP040671_4	4.1\|1241326\|34\|NZ_CP040671\|CRISPRCasFinder	1241326-1241359	34	MN694365	Marine virus AFVG_250M715, complete genome	36625-36658	9	0.735
NZ_CP040671_4	4.1\|1241326\|34\|NZ_CP040671\|CRISPRCasFinder	1241326-1241359	34	MN693745	Marine virus AFVG_250M903, complete genome	29899-29932	9	0.735
NZ_CP040671_4	4.1\|1241326\|34\|NZ_CP040671\|CRISPRCasFinder	1241326-1241359	34	MN694600	Marine virus AFVG_250M1144, complete genome	30150-30183	9	0.735
NZ_CP040671_4	4.1\|1241326\|34\|NZ_CP040671\|CRISPRCasFinder	1241326-1241359	34	MN694743	Marine virus AFVG_250M902, complete genome	29471-29504	9	0.735
NZ_CP040671_4	4.1\|1241326\|34\|NZ_CP040671\|CRISPRCasFinder	1241326-1241359	34	MN694523	Marine virus AFVG_250M1145, complete genome	30146-30179	9	0.735
NZ_CP040671_4	4.1\|1241326\|34\|NZ_CP040671\|CRISPRCasFinder	1241326-1241359	34	MN693303	Marine virus AFVG_25M231, complete genome	35726-35759	9	0.735
NZ_CP040671_4	4.1\|1241326\|34\|NZ_CP040671\|CRISPRCasFinder	1241326-1241359	34	MN693708	Marine virus AFVG_250M278, complete genome	2902-2935	9	0.735
NZ_CP040671_4	4.1\|1241326\|34\|NZ_CP040671\|CRISPRCasFinder	1241326-1241359	34	MN693736	Marine virus AFVG_250M277, complete genome	2893-2926	9	0.735
NZ_CP040671_4	4.1\|1241326\|34\|NZ_CP040671\|CRISPRCasFinder	1241326-1241359	34	MN694678	Marine virus AFVG_250M509, complete genome	40406-40439	9	0.735
NZ_CP040671_4	4.1\|1241326\|34\|NZ_CP040671\|CRISPRCasFinder	1241326-1241359	34	MN694284	Marine virus AFVG_250M474, complete genome	2881-2914	9	0.735
NZ_CP040671_7	7.1\|2607433\|34\|NZ_CP040671\|CRISPRCasFinder	2607433-2607466	34	NZ_CP050081	Rhizobium leguminosarum bv. trifolii strain 31B plasmid pRL31b5, complete sequence	277554-277587	9	0.735
NZ_CP040671_7	7.1\|2607433\|34\|NZ_CP040671\|CRISPRCasFinder	2607433-2607466	34	NZ_CP049731	Rhizobium leguminosarum strain A1 plasmid pRL12, complete sequence	274095-274128	9	0.735
NZ_CP040671_7	7.1\|2607433\|34\|NZ_CP040671\|CRISPRCasFinder	2607433-2607466	34	NZ_CP053206	Rhizobium leguminosarum bv. trifolii TA1 plasmid pRltTA1D, complete sequence	274426-274459	9	0.735
NZ_CP040671_7	7.1\|2607433\|34\|NZ_CP040671\|CRISPRCasFinder	2607433-2607466	34	MH809532	Burkholderia phage phiE131, complete genome	6528-6561	9	0.735
NZ_CP040671_7	7.1\|2607433\|34\|NZ_CP040671\|CRISPRCasFinder	2607433-2607466	34	MH809533	Burkholderia phage phiE058, complete genome	6528-6561	9	0.735
NZ_CP040671_2	2.17\|543010\|34\|NZ_CP040671\|PILER-CR,CRISPRCasFinder,CRT	543010-543043	34	NZ_CP013227	Staphylococcus aureus strain UTSW MRSA 55 plasmid UTSW55_1, complete sequence	671-704	10	0.706
NZ_CP040671_2	2.20\|543226\|32\|NZ_CP040671\|PILER-CR,CRISPRCasFinder,CRT	543226-543257	32	DQ222855	Bacillus anthracis phage Gamma isolate 53, complete genome	11120-11151	10	0.688
NZ_CP040671_2	2.20\|543226\|32\|NZ_CP040671\|PILER-CR,CRISPRCasFinder,CRT	543226-543257	32	DQ289555	Bacillus anthracis phage W Beta, complete genome	11120-11151	10	0.688
NZ_CP040671_2	2.20\|543226\|32\|NZ_CP040671\|PILER-CR,CRISPRCasFinder,CRT	543226-543257	32	NC_007814	Bacillus phage Fah, complete genome	11111-11142	10	0.688
NZ_CP040671_2	2.20\|543226\|32\|NZ_CP040671\|PILER-CR,CRISPRCasFinder,CRT	543226-543257	32	DQ150593	Bacillus anthracis bacteriophage Fah, complete sequence	11111-11142	10	0.688
NZ_CP040671_2	2.20\|543226\|32\|NZ_CP040671\|PILER-CR,CRISPRCasFinder,CRT	543226-543257	32	DQ222853	Bacillus anthracis phage Gamma isolate 51, complete genome	11120-11151	10	0.688
NZ_CP040671_2	2.20\|543226\|32\|NZ_CP040671\|PILER-CR,CRISPRCasFinder,CRT	543226-543257	32	MK085976	Bacillus phage AP631, complete genome	11101-11132	10	0.688
NZ_CP040671_2	2.20\|543226\|32\|NZ_CP040671\|PILER-CR,CRISPRCasFinder,CRT	543226-543257	32	DQ221100	Bacteriophage gamma putative terminase small subunit, putative terminase large subunit, putative portal protein, putative prohead protease, putative phage structural protein, putative DNA packaging protein, putative head-tail adaptor, phage related proteins, putative major tail protein, phage related protein, putative tail tape measure protein, phage related protein, putative minor structural protein, putative holin, N-acetylmuramoyl-L-alanine amidase (PlyG), putative lipoprotein, putative transcriptional regulator, conserved hypothetical proteins, FtsK/SpoIIIE family protein, phage related protein, conserved hypothetical protein, putative transcriptional regulator, putative site-specific recombinase, conserved hypothetical protein, putative transcriptional regulators, putative antirepressor, conserved hypothetical protein, putative DNA replication proteins, conserved hypothetical protein, phage related proteins, conserved hypothetical protein, putative transglycosylase, and putative endonuclease genes, complete cds	11120-11151	10	0.688
NZ_CP040671_2	2.20\|543226\|32\|NZ_CP040671\|PILER-CR,CRISPRCasFinder,CRT	543226-543257	32	DQ222851	Bacillus anthracis phage Cherry, complete genome	11120-11151	10	0.688
NZ_CP040671_2	2.20\|543226\|32\|NZ_CP040671\|PILER-CR,CRISPRCasFinder,CRT	543226-543257	32	DQ289556	Bacillus anthracis phage Gamma isolate d'Herelle, complete genome	11120-11151	10	0.688
NZ_CP040671_2	2.20\|543226\|32\|NZ_CP040671\|PILER-CR,CRISPRCasFinder,CRT	543226-543257	32	NC_007734	Bacillus phage WBeta, complete genome	11120-11151	10	0.688
NZ_CP040671_2	2.20\|543226\|32\|NZ_CP040671\|PILER-CR,CRISPRCasFinder,CRT	543226-543257	32	NC_007458	Bacillus phage Gamma, complete genome	11120-11151	10	0.688
NZ_CP040671_3	3.13\|1239473\|36\|NZ_CP040671\|PILER-CR,CRISPRCasFinder,CRT	1239473-1239508	36	NC_028969	Brevibacillus phage Osiris, complete genome	31472-31507	10	0.722
NZ_CP040671_3	3.13\|1239473\|36\|NZ_CP040671\|PILER-CR,CRISPRCasFinder,CRT	1239473-1239508	36	NC_041976	Brevibacillus phage Jimmer2, complete genome	31504-31539	10	0.722
NZ_CP040671_3	3.13\|1239473\|36\|NZ_CP040671\|PILER-CR,CRISPRCasFinder,CRT	1239473-1239508	36	KT151958	Brevibacillus phage Powder, complete genome	31509-31544	10	0.722
NZ_CP040671_3	3.13\|1239473\|36\|NZ_CP040671\|PILER-CR,CRISPRCasFinder,CRT	1239473-1239508	36	KC595515	Brevibacillus phage Jimmer1, complete genome	31504-31539	10	0.722
NZ_CP040671_3	3.23\|1240198\|35\|NZ_CP040671\|CRISPRCasFinder,CRT,PILER-CR	1240198-1240232	35	MN693841	Marine virus AFVG_250M1137, complete genome	11832-11866	10	0.714
NZ_CP040671_4	4.1\|1241326\|34\|NZ_CP040671\|CRISPRCasFinder	1241326-1241359	34	KJ410740	Synechococcus phage S-EIVl, complete genome	30484-30517	10	0.706
NZ_CP040671_5	5.2\|1930129\|35\|NZ_CP040671\|PILER-CR,CRISPRCasFinder,CRT	1930129-1930163	35	NC_009621	Sinorhizobium medicae WSM419 plasmid pSMED02, complete sequence	221734-221768	10	0.714
NZ_CP040671_5	5.7\|1930489\|36\|NZ_CP040671\|PILER-CR,CRISPRCasFinder,CRT	1930489-1930524	36	MK075006	Staphylococcus phage phiSP119-3, complete genome	10286-10321	10	0.722
NZ_CP040671_1	1.3\|473713\|34\|NZ_CP040671\|CRT,PILER-CR,CRISPRCasFinder	473713-473746	34	NC_013085	Synechococcus phage S-RSM4, complete genome	107720-107753	11	0.676
NZ_CP040671_1	1.3\|473713\|34\|NZ_CP040671\|CRT,PILER-CR,CRISPRCasFinder	473713-473746	34	FM207411	Synechococcus phage S-RSM4 complete genome	107720-107753	11	0.676
NZ_CP040671_4	4.1\|1241326\|34\|NZ_CP040671\|CRISPRCasFinder	1241326-1241359	34	MN693933	Marine virus AFVG_250M271, complete genome	35063-35096	11	0.676
NZ_CP040671_4	4.1\|1241326\|34\|NZ_CP040671\|CRISPRCasFinder	1241326-1241359	34	MN582094	Siphoviridae sp. ctjeG17, complete genome	30553-30586	12	0.647

1. spacer 4.1|1241326|34|NZ_CP040671|CRISPRCasFinder matches to MN693774 (Marine virus AFVG_250M641, complete genome) position: , mismatch: 5, identity: 0.853

-acggatgcagtttaacgtcatgctcaggacaaga	CRISPR spacer
tgctga-gcagtttaacgtcatgctcaggacgaca	Protospacer
 .* ** ************************.* *

2. spacer 1.2|473643|34|NZ_CP040671|CRT,PILER-CR,CRISPRCasFinder matches to MK249871 (Vibrio phage LP.2, complete genome) position: , mismatch: 8, identity: 0.765

gacttgaggcagcgtctttggttgatttttgctg	CRISPR spacer
catttgaggcagagactttggttgattataactt	Protospacer
 *.********* * ************ * .**

3. spacer 2.17|543010|34|NZ_CP040671|PILER-CR,CRISPRCasFinder,CRT matches to NZ_MF078634 (Acinetobacter pittii strain HGSA488 plasmid pLS488, complete sequence) position: , mismatch: 8, identity: 0.765

cttcaattgcttttagattttcattcagataaat-	CRISPR spacer
cttcaattgcttttagatagtca-taatatgggtc	Protospacer
******************  *** * * **...*

4. spacer 2.17|543010|34|NZ_CP040671|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP037425 (Acinetobacter johnsonii strain M19 plasmid pFM-M19, complete sequence) position: , mismatch: 8, identity: 0.765

cttcaattgcttttagattttcattcagataaat-	CRISPR spacer
cttcaattgcttttagatagtca-taatatgggtc	Protospacer
******************  *** * * **...*

5. spacer 2.17|543010|34|NZ_CP040671|PILER-CR,CRISPRCasFinder,CRT matches to NC_041928 (Staphylococcus phage phiIBB-SEP1, complete genome) position: , mismatch: 8, identity: 0.765

cttcaattgc--ttttagattttcattcagataaat	CRISPR spacer
--gaaaatgttattttagattttcaattagataaat	Protospacer
    ** **.  ************* *.********

6. spacer 2.17|543010|34|NZ_CP040671|PILER-CR,CRISPRCasFinder,CRT matches to MF417868 (Uncultured Caudovirales phage clone 7AX_1, partial genome) position: , mismatch: 8, identity: 0.765

cttcaattgc--ttttagattttcattcagataaat	CRISPR spacer
--gaaaatgttattttagattttcaattagataaat	Protospacer
    ** **.  ************* *.********

7. spacer 2.17|543010|34|NZ_CP040671|PILER-CR,CRISPRCasFinder,CRT matches to KP027447 (Staphylococcus phage phiIPLA-C1C, complete genome) position: , mismatch: 8, identity: 0.765

cttcaattgc--ttttagattttcattcagataaat	CRISPR spacer
--gaaaatgttattttagattttcaattagataaat	Protospacer
    ** **.  ************* *.********

8. spacer 4.1|1241326|34|NZ_CP040671|CRISPRCasFinder matches to NC_019544 (Deep-sea thermophilic phage D6E, complete genome) position: , mismatch: 8, identity: 0.765

acggatgcagtttaacgtcatgctcaggacaaga	CRISPR spacer
gtccgagcagtttaacgtcttactcaggacaaga	Protospacer
..  . ************* *.************

9. spacer 2.20|543226|32|NZ_CP040671|PILER-CR,CRISPRCasFinder,CRT matches to KY963370 (Bacillus phage Negev_SA, complete genome) position: , mismatch: 9, identity: 0.719

tactaaactctgcaagtaacaaattagcaaga	CRISPR spacer
tgaaaaactctgcaagtaacaaggtagaggaa	Protospacer
*.  ******************. *** ...*

10. spacer 2.20|543226|32|NZ_CP040671|PILER-CR,CRISPRCasFinder,CRT matches to KY963369 (Bacillus phage Tavor_SA, complete genome) position: , mismatch: 9, identity: 0.719

tactaaactctgcaagtaacaaattagcaaga	CRISPR spacer
tgaaaaactctgcaagtaacaaggtagaggaa	Protospacer
*.  ******************. *** ...*

11. spacer 3.26|1240414|33|NZ_CP040671|CRISPRCasFinder,CRT,PILER-CR matches to NC_027348 (Delftia phage RG-2014, complete genome) position: , mismatch: 9, identity: 0.727

ccaaaacatagtgttctcctaagtaaactccat	CRISPR spacer
tgcagccatagagttctcctaagaaaactctag	Protospacer
.  *. ***** *********** ******.*

12. spacer 4.1|1241326|34|NZ_CP040671|CRISPRCasFinder matches to MN693829 (Marine virus AFVG_250M529, complete genome) position: , mismatch: 9, identity: 0.735

acggatgcagtttaacgtcatgctcaggacaaga	CRISPR spacer
ttacgagcagtttaatgtcatgctcaggacaacc	Protospacer
 .. . *********.****************

13. spacer 4.1|1241326|34|NZ_CP040671|CRISPRCasFinder matches to MN694621 (Marine virus AFVG_250M652, complete genome) position: , mismatch: 9, identity: 0.735

acggatgcagtttaacgtcatgctcaggacaaga	CRISPR spacer
gtgagagcagttttacgtcatgctcaggacagtg	Protospacer
..*.. ******* *****************. .

14. spacer 4.1|1241326|34|NZ_CP040671|CRISPRCasFinder matches to MN694365 (Marine virus AFVG_250M715, complete genome) position: , mismatch: 9, identity: 0.735

acggatgcagtttaacgtcatgctcaggacaaga	CRISPR spacer
tagtgagcagtttaatgtcatgctcaggaccgaa	Protospacer
  * . *********.************** ..*

15. spacer 4.1|1241326|34|NZ_CP040671|CRISPRCasFinder matches to MN693745 (Marine virus AFVG_250M903, complete genome) position: , mismatch: 9, identity: 0.735

acggatgcagtttaacgtcatgctcaggacaaga	CRISPR spacer
gtgagagcagtttcacgtcatgctcaggaccaat	Protospacer
..*.. ******* **************** *.

16. spacer 4.1|1241326|34|NZ_CP040671|CRISPRCasFinder matches to MN694600 (Marine virus AFVG_250M1144, complete genome) position: , mismatch: 9, identity: 0.735

acggatgcagtttaacgtcatgctcaggacaaga	CRISPR spacer
gtgagagcagtttcacgtcatgctcaggaccaat	Protospacer
..*.. ******* **************** *.

17. spacer 4.1|1241326|34|NZ_CP040671|CRISPRCasFinder matches to MN694743 (Marine virus AFVG_250M902, complete genome) position: , mismatch: 9, identity: 0.735

acggatgcagtttaacgtcatgctcaggacaaga	CRISPR spacer
gtgagagcagtttcacgtcatgctcaggaccaat	Protospacer
..*.. ******* **************** *.

18. spacer 4.1|1241326|34|NZ_CP040671|CRISPRCasFinder matches to MN694523 (Marine virus AFVG_250M1145, complete genome) position: , mismatch: 9, identity: 0.735

acggatgcagtttaacgtcatgctcaggacaaga	CRISPR spacer
gtgagagcagtttcacgtcatgctcaggaccaat	Protospacer
..*.. ******* **************** *.

19. spacer 4.1|1241326|34|NZ_CP040671|CRISPRCasFinder matches to MN693303 (Marine virus AFVG_25M231, complete genome) position: , mismatch: 9, identity: 0.735

acggatgcagtttaacgtcatgctcaggacaaga	CRISPR spacer
atgtgagcagttttacgtcatgctcaggacgttg	Protospacer
*.* . ******* ****************.  .

20. spacer 4.1|1241326|34|NZ_CP040671|CRISPRCasFinder matches to MN693708 (Marine virus AFVG_250M278, complete genome) position: , mismatch: 9, identity: 0.735

acggatgcagtttaacgtcatgctcaggacaaga	CRISPR spacer
ccttgagtagtttaaagtcatactcaggacaata	Protospacer
 *  . *.******* *****.********** *

21. spacer 4.1|1241326|34|NZ_CP040671|CRISPRCasFinder matches to MN693736 (Marine virus AFVG_250M277, complete genome) position: , mismatch: 9, identity: 0.735

acggatgcagtttaacgtcatgctcaggacaaga	CRISPR spacer
ccttgagtagtttaaagtcatactcaggacaata	Protospacer
 *  . *.******* *****.********** *

22. spacer 4.1|1241326|34|NZ_CP040671|CRISPRCasFinder matches to MN694678 (Marine virus AFVG_250M509, complete genome) position: , mismatch: 9, identity: 0.735

acggatgcagtttaacgtcatgctcaggacaaga	CRISPR spacer
attagagcagtttaaagtcttgctcaggactata	Protospacer
*. .. ********* *** ********** * *

23. spacer 4.1|1241326|34|NZ_CP040671|CRISPRCasFinder matches to MN694284 (Marine virus AFVG_250M474, complete genome) position: , mismatch: 9, identity: 0.735

acggatgcagtttaacgtcatgctcaggacaaga	CRISPR spacer
ccttgagtagtttaaagtcatactcaggacaata	Protospacer
 *  . *.******* *****.********** *

24. spacer 7.1|2607433|34|NZ_CP040671|CRISPRCasFinder matches to NZ_CP050081 (Rhizobium leguminosarum bv. trifolii strain 31B plasmid pRL31b5, complete sequence) position: , mismatch: 9, identity: 0.735

ggccgaagcccagaagcgcaccgaagaacgggtg	CRISPR spacer
cgccgcagcccagcagcgcaccgaacgcgaggcg	Protospacer
 **** ******* *********** .  .**.*

25. spacer 7.1|2607433|34|NZ_CP040671|CRISPRCasFinder matches to NZ_CP049731 (Rhizobium leguminosarum strain A1 plasmid pRL12, complete sequence) position: , mismatch: 9, identity: 0.735

ggccgaagcccagaagcgcaccgaagaacgggtg	CRISPR spacer
cgccgcagcccagcagcgcaccgaacgcgaggcg	Protospacer
 **** ******* *********** .  .**.*

26. spacer 7.1|2607433|34|NZ_CP040671|CRISPRCasFinder matches to NZ_CP053206 (Rhizobium leguminosarum bv. trifolii TA1 plasmid pRltTA1D, complete sequence) position: , mismatch: 9, identity: 0.735

ggccgaagcccagaagcgcaccgaagaacgggtg	CRISPR spacer
cgccgcagcccagcagcgcaccgaacgcgaggcg	Protospacer
 **** ******* *********** .  .**.*

27. spacer 7.1|2607433|34|NZ_CP040671|CRISPRCasFinder matches to MH809532 (Burkholderia phage phiE131, complete genome) position: , mismatch: 9, identity: 0.735

ggccgaagcccagaagcgcaccgaagaacgggtg	CRISPR spacer
ggatgaagccgagaagcgcgccgaagaagccaag	Protospacer
** .****** ********.********   . *

28. spacer 7.1|2607433|34|NZ_CP040671|CRISPRCasFinder matches to MH809533 (Burkholderia phage phiE058, complete genome) position: , mismatch: 9, identity: 0.735

ggccgaagcccagaagcgcaccgaagaacgggtg	CRISPR spacer
ggatgaagccgagaagcgcgccgaagaagccaag	Protospacer
** .****** ********.********   . *

29. spacer 2.17|543010|34|NZ_CP040671|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013227 (Staphylococcus aureus strain UTSW MRSA 55 plasmid UTSW55_1, complete sequence) position: , mismatch: 10, identity: 0.706

cttcaattgcttttagattttcattcagataaat	CRISPR spacer
cttcaattgcttttaaatgttcatcattatttcc	Protospacer
***************.** *****.   **   .

30. spacer 2.20|543226|32|NZ_CP040671|PILER-CR,CRISPRCasFinder,CRT matches to DQ222855 (Bacillus anthracis phage Gamma isolate 53, complete genome) position: , mismatch: 10, identity: 0.688

tactaaactctgcaagtaacaaattagcaaga	CRISPR spacer
tgaaaaactctgcaagcaacaaagtagaggag	Protospacer
*.  ************.****** *** ....

31. spacer 2.20|543226|32|NZ_CP040671|PILER-CR,CRISPRCasFinder,CRT matches to DQ289555 (Bacillus anthracis phage W Beta, complete genome) position: , mismatch: 10, identity: 0.688

tactaaactctgcaagtaacaaattagcaaga	CRISPR spacer
tgaaaaactctgcaagcaacaaagtagaggag	Protospacer
*.  ************.****** *** ....

32. spacer 2.20|543226|32|NZ_CP040671|PILER-CR,CRISPRCasFinder,CRT matches to NC_007814 (Bacillus phage Fah, complete genome) position: , mismatch: 10, identity: 0.688

tactaaactctgcaagtaacaaattagcaaga	CRISPR spacer
tgaaaaactctgcaagcaacaaagtagaggag	Protospacer
*.  ************.****** *** ....

33. spacer 2.20|543226|32|NZ_CP040671|PILER-CR,CRISPRCasFinder,CRT matches to DQ150593 (Bacillus anthracis bacteriophage Fah, complete sequence) position: , mismatch: 10, identity: 0.688

tactaaactctgcaagtaacaaattagcaaga	CRISPR spacer
tgaaaaactctgcaagcaacaaagtagaggag	Protospacer
*.  ************.****** *** ....

34. spacer 2.20|543226|32|NZ_CP040671|PILER-CR,CRISPRCasFinder,CRT matches to DQ222853 (Bacillus anthracis phage Gamma isolate 51, complete genome) position: , mismatch: 10, identity: 0.688

tactaaactctgcaagtaacaaattagcaaga	CRISPR spacer
tgaaaaactctgcaagcaacaaagtagaggag	Protospacer
*.  ************.****** *** ....

35. spacer 2.20|543226|32|NZ_CP040671|PILER-CR,CRISPRCasFinder,CRT matches to MK085976 (Bacillus phage AP631, complete genome) position: , mismatch: 10, identity: 0.688

tactaaactctgcaagtaacaaattagcaaga	CRISPR spacer
tgaaaaactctgcaagcaacaaagtagaggag	Protospacer
*.  ************.****** *** ....

36. spacer 2.20|543226|32|NZ_CP040671|PILER-CR,CRISPRCasFinder,CRT matches to DQ221100 (Bacteriophage gamma putative terminase small subunit, putative terminase large subunit, putative portal protein, putative prohead protease, putative phage structural protein, putative DNA packaging protein, putative head-tail adaptor, phage related proteins, putative major tail protein, phage related protein, putative tail tape measure protein, phage related protein, putative minor structural protein, putative holin, N-acetylmuramoyl-L-alanine amidase (PlyG), putative lipoprotein, putative transcriptional regulator, conserved hypothetical proteins, FtsK/SpoIIIE family protein, phage related protein, conserved hypothetical protein, putative transcriptional regulator, putative site-specific recombinase, conserved hypothetical protein, putative transcriptional regulators, putative antirepressor, conserved hypothetical protein, putative DNA replication proteins, conserved hypothetical protein, phage related proteins, conserved hypothetical protein, putative transglycosylase, and putative endonuclease genes, complete cds) position: , mismatch: 10, identity: 0.688

tactaaactctgcaagtaacaaattagcaaga	CRISPR spacer
tgaaaaactctgcaagcaacaaagtagaggag	Protospacer
*.  ************.****** *** ....

37. spacer 2.20|543226|32|NZ_CP040671|PILER-CR,CRISPRCasFinder,CRT matches to DQ222851 (Bacillus anthracis phage Cherry, complete genome) position: , mismatch: 10, identity: 0.688

tactaaactctgcaagtaacaaattagcaaga	CRISPR spacer
tgaaaaactctgcaagcaacaaagtagaggag	Protospacer
*.  ************.****** *** ....

38. spacer 2.20|543226|32|NZ_CP040671|PILER-CR,CRISPRCasFinder,CRT matches to DQ289556 (Bacillus anthracis phage Gamma isolate d'Herelle, complete genome) position: , mismatch: 10, identity: 0.688

tactaaactctgcaagtaacaaattagcaaga	CRISPR spacer
tgaaaaactctgcaagcaacaaagtagaggag	Protospacer
*.  ************.****** *** ....

39. spacer 2.20|543226|32|NZ_CP040671|PILER-CR,CRISPRCasFinder,CRT matches to NC_007734 (Bacillus phage WBeta, complete genome) position: , mismatch: 10, identity: 0.688

tactaaactctgcaagtaacaaattagcaaga	CRISPR spacer
tgaaaaactctgcaagcaacaaagtagaggag	Protospacer
*.  ************.****** *** ....

40. spacer 2.20|543226|32|NZ_CP040671|PILER-CR,CRISPRCasFinder,CRT matches to NC_007458 (Bacillus phage Gamma, complete genome) position: , mismatch: 10, identity: 0.688

tactaaactctgcaagtaacaaattagcaaga	CRISPR spacer
tgaaaaactctgcaagcaacaaagtagaggag	Protospacer
*.  ************.****** *** ....

41. spacer 3.13|1239473|36|NZ_CP040671|PILER-CR,CRISPRCasFinder,CRT matches to NC_028969 (Brevibacillus phage Osiris, complete genome) position: , mismatch: 10, identity: 0.722

tacaaaac------ctctaacatttctaaagtagtttttctt	CRISPR spacer
------acttttcgttctaacatttcaaaagtagtttctctc	Protospacer
      **      .*********** **********.***.

42. spacer 3.13|1239473|36|NZ_CP040671|PILER-CR,CRISPRCasFinder,CRT matches to NC_041976 (Brevibacillus phage Jimmer2, complete genome) position: , mismatch: 10, identity: 0.722

tacaaaac------ctctaacatttctaaagtagtttttctt	CRISPR spacer
------acttttcgttctaacatttcaaaagtagtttctctc	Protospacer
      **      .*********** **********.***.

43. spacer 3.13|1239473|36|NZ_CP040671|PILER-CR,CRISPRCasFinder,CRT matches to KT151958 (Brevibacillus phage Powder, complete genome) position: , mismatch: 10, identity: 0.722

tacaaaac------ctctaacatttctaaagtagtttttctt	CRISPR spacer
------acttttcgttctaacatttcaaaagtagtttctctc	Protospacer
      **      .*********** **********.***.

44. spacer 3.13|1239473|36|NZ_CP040671|PILER-CR,CRISPRCasFinder,CRT matches to KC595515 (Brevibacillus phage Jimmer1, complete genome) position: , mismatch: 10, identity: 0.722

tacaaaac------ctctaacatttctaaagtagtttttctt	CRISPR spacer
------acttttcgttctaacatttcaaaagtagtttctctc	Protospacer
      **      .*********** **********.***.

45. spacer 3.23|1240198|35|NZ_CP040671|CRISPRCasFinder,CRT,PILER-CR matches to MN693841 (Marine virus AFVG_250M1137, complete genome) position: , mismatch: 10, identity: 0.714

gggacttctttttcttgttctttggggaattttag	CRISPR spacer
tcgatttctttttcttcttctttgggggtcttccc	Protospacer
  **.*********** **********. .**.

46. spacer 4.1|1241326|34|NZ_CP040671|CRISPRCasFinder matches to KJ410740 (Synechococcus phage S-EIVl, complete genome) position: , mismatch: 10, identity: 0.706

acggatgcagtttaacgtcatgctcaggacaaga	CRISPR spacer
gttaaagcagtttaacgtcatgcttgggacggaa	Protospacer
.. .* ******************..****...*

47. spacer 5.2|1930129|35|NZ_CP040671|PILER-CR,CRISPRCasFinder,CRT matches to NC_009621 (Sinorhizobium medicae WSM419 plasmid pSMED02, complete sequence) position: , mismatch: 10, identity: 0.714

tcactgatcagggcgaggagaccgcccttgcggct	CRISPR spacer
ggatcgatcaggacgaggagatcgcccttgttggc	Protospacer
  *..*******.********.********. * .

48. spacer 5.7|1930489|36|NZ_CP040671|PILER-CR,CRISPRCasFinder,CRT matches to MK075006 (Staphylococcus phage phiSP119-3, complete genome) position: , mismatch: 10, identity: 0.722

gtatgggaaacaaattatgaaatctacac-----taggtgg	CRISPR spacer
gcgtgggaaacaaattatgatttctacacgcctgca-----	Protospacer
*..*****************  *******     .*

49. spacer 1.3|473713|34|NZ_CP040671|CRT,PILER-CR,CRISPRCasFinder matches to NC_013085 (Synechococcus phage S-RSM4, complete genome) position: , mismatch: 11, identity: 0.676

gtgactggaaccacaagaggagttgtgaagtagg	CRISPR spacer
ccgactggaatcacaagagcagttgttgcatcaa	Protospacer
 .********.******** ****** . .* ..

50. spacer 1.3|473713|34|NZ_CP040671|CRT,PILER-CR,CRISPRCasFinder matches to FM207411 (Synechococcus phage S-RSM4 complete genome) position: , mismatch: 11, identity: 0.676

gtgactggaaccacaagaggagttgtgaagtagg	CRISPR spacer
ccgactggaatcacaagagcagttgttgcatcaa	Protospacer
 .********.******** ****** . .* ..

51. spacer 4.1|1241326|34|NZ_CP040671|CRISPRCasFinder matches to MN693933 (Marine virus AFVG_250M271, complete genome) position: , mismatch: 11, identity: 0.676

acggatgcagtttaacgtcatgctcaggacaaga	CRISPR spacer
ttttgagcagtttaatgtcatgctcaggactgtt	Protospacer
 .  . *********.************** .

52. spacer 4.1|1241326|34|NZ_CP040671|CRISPRCasFinder matches to MN582094 (Siphoviridae sp. ctjeG17, complete genome) position: , mismatch: 12, identity: 0.647

acggatgcagtttaacgtcatgctcaggacaaga	CRISPR spacer
ttatgagcagtttatggtcatgctcaggacttcc	Protospacer
 .. . ********  **************

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

2053535 : 2133058

Emiliania_huxleyi_virus(15.79%)

protease,tRNA,transposase

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_149820542.1\|2053535_2054366_-\|protease	M48 family metalloprotease	NA	NA	NA	NA
WP_149820544.1\|2054569_2058550_-	DNA-directed RNA polymerase subunit beta''	G9E4R5	Emiliania_huxleyi_virus	5.8e-09	26.4
WP_149820546.1\|2058569_2060438_-	DNA-directed RNA polymerase subunit gamma	A0A2I7QNZ7	Vibrio_phage	2.1e-49	30.4
WP_149820548.1\|2060514_2063841_-	DNA-directed RNA polymerase subunit beta	G8DH04	Emiliania_huxleyi_virus	4.0e-35	23.8
WP_149820550.1\|2064076_2064721_-	Uma2 family endonuclease	NA	NA	NA	NA
WP_149820552.1\|2064762_2065458_-	ATP-binding cassette domain-containing protein	G9BWD6	Planktothrix_phage	1.3e-78	70.2
WP_149820554.1\|2065467_2066622_-	FtsX-like permease family protein	NA	NA	NA	NA
WP_149820556.1\|2066631_2067795_-	HlyD family efflux transporter periplasmic adaptor subunit	NA	NA	NA	NA
WP_149820558.1\|2067883_2068471_-	pseudouridine synthase	NA	NA	NA	NA
WP_149820560.1\|2068705_2073196_-	helix-turn-helix domain-containing protein	G3M9Z3	Bacillus_virus	2.2e-28	52.0
WP_149820562.1\|2073322_2074225_+\|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	NA	NA	NA	NA
WP_149820564.1\|2074203_2074947_-	type 1 glutamine amidotransferase	NA	NA	NA	NA
WP_149821800.1\|2074953_2076546_-	hypothetical protein	NA	NA	NA	NA
WP_149820566.1\|2076588_2077020_+	resolvase	NA	NA	NA	NA
WP_149820568.1\|2077058_2079089_+	RNB domain-containing ribonuclease	A0A2H4UVB7	Bodo_saltans_virus	1.2e-13	24.4
WP_149820570.1\|2079093_2079483_+	YkgJ family cysteine cluster protein	NA	NA	NA	NA
WP_149820572.1\|2079528_2079882_+	hypothetical protein	NA	NA	NA	NA
WP_149820574.1\|2079909_2081679_+	ATP-binding cassette domain-containing protein	W8CYL7	Bacillus_phage	1.6e-46	29.2
WP_149820576.1\|2082075_2082825_+	pseudouridine synthase	NA	NA	NA	NA
WP_149820578.1\|2082794_2085131_-	heavy metal translocating P-type ATPase	M1HXH2	Paramecium_bursaria_Chlorella_virus	3.9e-13	31.6
WP_149820580.1\|2085356_2086637_+	phosphopyruvate hydratase	A0A1X9I5Z8	Streptococcus_phage	3.7e-122	53.9
WP_149820582.1\|2086637_2087477_+	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA	NA	NA	NA	NA
WP_149820584.1\|2087411_2088200_-	E3 ubiquitin ligase	NA	NA	NA	NA
WP_149820586.1\|2088259_2089270_-	biotin synthase BioB	NA	NA	NA	NA
WP_149820588.1\|2089279_2091745_-\|tRNA	phenylalanine--tRNA ligase subunit beta	NA	NA	NA	NA
WP_149820590.1\|2091830_2092430_-	ribonuclease HII	G9E3X7	Emiliania_huxleyi_virus	1.9e-28	42.0
WP_149820592.1\|2092432_2093812_-	nucleotide sugar dehydrogenase	A0A127AXI2	Bacillus_phage	1.2e-81	37.8
WP_149820594.1\|2093826_2094783_-	NAD-dependent epimerase/dehydratase family protein	A0A2K9KZK0	Tupanvirus	2.3e-89	49.8
WP_149820596.1\|2094882_2096193_-	dihydroorotase	NA	NA	NA	NA
WP_149820598.1\|2096383_2097502_+	NADH-quinone oxidoreductase subunit NuoH	NA	NA	NA	NA
WP_149820600.1\|2097531_2098122_+	NAD(P)H-quinone oxidoreductase subunit I	A0A0C5AMV0	Cyanophage	8.2e-61	70.7
WP_149820602.1\|2098133_2098736_+	NADH-quinone oxidoreductase subunit J	NA	NA	NA	NA
WP_149820604.1\|2098745_2099051_+	NADH-quinone oxidoreductase subunit NuoK	NA	NA	NA	NA
WP_149820606.1\|2099127_2100297_+	PDZ domain-containing protein	A0A1B1IT49	uncultured_Mediterranean_phage	1.0e-22	27.4
WP_149820608.1\|2100298_2101312_+	DUF3326 domain-containing protein	NA	NA	NA	NA
WP_149820611.1\|2101726_2102704_+\|transposase	Rpn family recombination-promoting nuclease/putative transposase	NA	NA	NA	NA
WP_149820613.1\|2102707_2103577_+\|transposase	Rpn family recombination-promoting nuclease/putative transposase	NA	NA	NA	NA
WP_149820615.1\|2103580_2104510_+\|transposase	Rpn family recombination-promoting nuclease/putative transposase	NA	NA	NA	NA
WP_149820617.1\|2104513_2105383_+\|transposase	Rpn family recombination-promoting nuclease/putative transposase	NA	NA	NA	NA
WP_149820615.1\|2105386_2106316_+\|transposase	Rpn family recombination-promoting nuclease/putative transposase	NA	NA	NA	NA
WP_149820619.1\|2106319_2107237_+\|transposase	Rpn family recombination-promoting nuclease/putative transposase	NA	NA	NA	NA
WP_149820621.1\|2107240_2108134_+\|transposase	Rpn family recombination-promoting nuclease/putative transposase	NA	NA	NA	NA
WP_149820623.1\|2108137_2109091_+\|transposase	Rpn family recombination-promoting nuclease/putative transposase	NA	NA	NA	NA
WP_149820625.1\|2109094_2110072_+\|transposase	Rpn family recombination-promoting nuclease/putative transposase	NA	NA	NA	NA
WP_149820627.1\|2110280_2115407_+	hypothetical protein	NA	NA	NA	NA
WP_149820630.1\|2115423_2116083_+	hypothetical protein	NA	NA	NA	NA
WP_149820632.1\|2116101_2117094_+	prepilin-type N-terminal cleavage/methylation domain-containing protein	NA	NA	NA	NA
WP_149820634.1\|2117106_2117637_+	prepilin-type N-terminal cleavage/methylation domain-containing protein	NA	NA	NA	NA
WP_149821801.1\|2117684_2119928_-	heavy metal translocating P-type ATPase	A0A218MNH6	uncultured_virus	8.1e-117	37.9
WP_149820636.1\|2119927_2120122_-	heavy-metal-associated domain-containing protein	NA	NA	NA	NA
WP_149820638.1\|2120191_2121523_-	cytochrome c biogenesis protein	NA	NA	NA	NA
WP_149820640.1\|2121523_2122540_-	oxygen-dependent coproporphyrinogen oxidase	NA	NA	NA	NA
WP_149820642.1\|2122603_2123245_-	cofactor assembly of complex C subunit B	NA	NA	NA	NA
WP_149820644.1\|2123332_2123848_+	L,D-transpeptidase family protein	NA	NA	NA	NA
WP_149820646.1\|2123844_2125209_-\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA
WP_149820648.1\|2125334_2126345_+\|tRNA	phenylalanine--tRNA ligase subunit alpha	A0A2K9L3A8	Tupanvirus	4.3e-33	39.9
WP_149821802.1\|2126372_2126993_+	AAA family ATPase	D4HTX7	Vibrio_phage	6.3e-11	36.6
WP_149820650.1\|2127107_2129714_+	bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase	NA	NA	NA	NA
WP_149820652.1\|2129722_2130100_-	CrcB family protein	A0A2H4PQR0	Staphylococcus_phage	1.5e-07	37.2
WP_149821803.1\|2130086_2130515_-	fluoride efflux transporter CrcB	A0A2H4PQR0	Staphylococcus_phage	1.9e-06	33.0
WP_149820654.1\|2130514_2132128_-	universal stress protein	NA	NA	NA	NA
WP_149820656.1\|2132236_2133058_+\|protease	proteasome-type protease	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP040671

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CRISPR-Cas detection and classification

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Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection