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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP043609 Bacteroides fragilis strain GUT04 plasmid unnamed1, complete sequence 0 crisprs cas14j,Cas14u_CAS-V,c2c9_V-U4 0 0 4 0
NZ_CP043610 Bacteroides fragilis strain GUT04 chromosome, complete genome 2 crisprs DEDDh,PrimPol,WYL,cas3,cas2,cas1,cas9,PD-DExK,RT 0 7 6 1

Results visualization

1. NZ_CP043610
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP043610_1 143865-144010 Orphan NA
2 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP043610_2 3903007-3904052 TypeII NA
13 spacers
cas2,cas1,cas9

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_CP043610_2 2.5|3903362|30|NZ_CP043610|PILER-CR,CRISPRCasFinder 3903362-3903391 30 MN078104 Bacteroides phage Barc2635, complete genome 31932-31961 0 1.0
NZ_CP043610_2 2.5|3903362|30|NZ_CP043610|PILER-CR,CRISPRCasFinder 3903362-3903391 30 NC_016770 Bacteroides phage B124-14, complete genome 33198-33227 0 1.0
NZ_CP043610_2 2.5|3903362|30|NZ_CP043610|PILER-CR,CRISPRCasFinder 3903362-3903391 30 FJ008913 Bacteroides phage B40-8 culture-collection ATCC:51477-B1, complete genome 36292-36321 0 1.0
NZ_CP043610_2 2.5|3903362|30|NZ_CP043610|PILER-CR,CRISPRCasFinder 3903362-3903391 30 HE608841 Bacteroides phage B124-14 complete genome 33198-33227 0 1.0
NZ_CP043610_2 2.5|3903362|30|NZ_CP043610|PILER-CR,CRISPRCasFinder 3903362-3903391 30 NC_011222 Bacteroides phage B40-8, complete genome 36292-36321 0 1.0
NZ_CP043610_2 2.5|3903362|30|NZ_CP043610|PILER-CR,CRISPRCasFinder 3903362-3903391 30 MT630433 Bacteroides phage vB_BfrS_23, complete genome 36445-36474 1 0.967
NZ_CP043610_2 2.1|3903054|30|NZ_CP043610|PILER-CR,CRISPRCasFinder 3903054-3903083 30 MN694251 Marine virus AFVG_250M445, complete genome 2134-2163 6 0.8
NZ_CP043610_2 2.2|3903131|30|NZ_CP043610|PILER-CR,CRISPRCasFinder 3903131-3903160 30 NZ_CP014093 Vibrio diabolicus strain FDAARGOS_96 plasmid unnamed, complete sequence 16535-16564 7 0.767
NZ_CP043610_2 2.2|3903131|30|NZ_CP043610|PILER-CR,CRISPRCasFinder 3903131-3903160 30 NZ_CP013486 Vibrio alginolyticus strain ATCC 33787 plasmid pMBL128, complete sequence 56531-56560 7 0.767
NZ_CP043610_2 2.2|3903131|30|NZ_CP043610|PILER-CR,CRISPRCasFinder 3903131-3903160 30 NZ_CP046774 Vibrio alginolyticus strain 2014V-1011 plasmid unnamed1, complete sequence 17282-17311 7 0.767
NZ_CP043610_2 2.2|3903131|30|NZ_CP043610|PILER-CR,CRISPRCasFinder 3903131-3903160 30 NZ_CP046807 Vibrio alginolyticus strain 2439-01 plasmid unnamed1, complete sequence 137316-137345 7 0.767
NZ_CP043610_2 2.9|3903670|30|NZ_CP043610|PILER-CR,CRISPRCasFinder 3903670-3903699 30 NC_048849 Enterobacter phage vB_EclM_CIP9, complete genome 66362-66391 7 0.767
NZ_CP043610_2 2.13|3903977|29|NZ_CP043610|PILER-CR,CRISPRCasFinder 3903977-3904005 29 NZ_CP045269 Bacillus megaterium strain FDU301 plasmid pFDU301G, complete sequence 4569-4597 7 0.759
NZ_CP043610_2 2.13|3903977|29|NZ_CP043610|PILER-CR,CRISPRCasFinder 3903977-3904005 29 NZ_CP039853 Salinimonas sp. KX18D6 plasmid plas12, complete sequence 165200-165228 7 0.759
NZ_CP043610_2 2.2|3903131|30|NZ_CP043610|PILER-CR,CRISPRCasFinder 3903131-3903160 30 NZ_CP017191 Xanthomonas campestris pv. vesicatoria str. 85-10 plasmid p_XCV_1, complete sequence 98968-98997 8 0.733
NZ_CP043610_2 2.2|3903131|30|NZ_CP043610|PILER-CR,CRISPRCasFinder 3903131-3903160 30 NZ_CP018463 Xanthomonas euvesicatoria strain LMG930 plasmid pLMG930.2, complete sequence 22447-22476 8 0.733
NZ_CP043610_2 2.2|3903131|30|NZ_CP043610|PILER-CR,CRISPRCasFinder 3903131-3903160 30 NC_007507 Xanthomonas campestris pv. vesicatoria str. 85-10 plasmid pXCV183, complete sequence 146537-146566 8 0.733
NZ_CP043610_2 2.6|3903439|30|NZ_CP043610|PILER-CR,CRISPRCasFinder 3903439-3903468 30 NZ_CP023318 Bacillus megaterium strain A plasmid p1, complete sequence 128432-128461 8 0.733
NZ_CP043610_2 2.5|3903362|30|NZ_CP043610|PILER-CR,CRISPRCasFinder 3903362-3903391 30 NC_014534 Gloeothece verrucosa PCC 7822 plasmid Cy782202, complete sequence 3047-3076 9 0.7
NZ_CP043610_2 2.9|3903670|30|NZ_CP043610|PILER-CR,CRISPRCasFinder 3903670-3903699 30 HQ634189 Cyanophage Syn30 genomic sequence 43979-44008 9 0.7
NZ_CP043610_2 2.9|3903670|30|NZ_CP043610|PILER-CR,CRISPRCasFinder 3903670-3903699 30 AP014858 Vibrio phage RYC DNA, complete sequence 87885-87914 9 0.7
NZ_CP043610_1 1.1|143892|34|NZ_CP043610|PILER-CR 143892-143925 34 NC_023559 Oenococcus phage phi9805, complete genome 36716-36749 12 0.647

1. spacer 2.5|3903362|30|NZ_CP043610|PILER-CR,CRISPRCasFinder matches to MN078104 (Bacteroides phage Barc2635, complete genome) position: , mismatch: 0, identity: 1.0

tatggaggcaaattctccgattatccggga	CRISPR spacer
tatggaggcaaattctccgattatccggga	Protospacer
******************************

2. spacer 2.5|3903362|30|NZ_CP043610|PILER-CR,CRISPRCasFinder matches to NC_016770 (Bacteroides phage B124-14, complete genome) position: , mismatch: 0, identity: 1.0

tatggaggcaaattctccgattatccggga	CRISPR spacer
tatggaggcaaattctccgattatccggga	Protospacer
******************************

3. spacer 2.5|3903362|30|NZ_CP043610|PILER-CR,CRISPRCasFinder matches to FJ008913 (Bacteroides phage B40-8 culture-collection ATCC:51477-B1, complete genome) position: , mismatch: 0, identity: 1.0

tatggaggcaaattctccgattatccggga	CRISPR spacer
tatggaggcaaattctccgattatccggga	Protospacer
******************************

4. spacer 2.5|3903362|30|NZ_CP043610|PILER-CR,CRISPRCasFinder matches to HE608841 (Bacteroides phage B124-14 complete genome) position: , mismatch: 0, identity: 1.0

tatggaggcaaattctccgattatccggga	CRISPR spacer
tatggaggcaaattctccgattatccggga	Protospacer
******************************

5. spacer 2.5|3903362|30|NZ_CP043610|PILER-CR,CRISPRCasFinder matches to NC_011222 (Bacteroides phage B40-8, complete genome) position: , mismatch: 0, identity: 1.0

tatggaggcaaattctccgattatccggga	CRISPR spacer
tatggaggcaaattctccgattatccggga	Protospacer
******************************

6. spacer 2.5|3903362|30|NZ_CP043610|PILER-CR,CRISPRCasFinder matches to MT630433 (Bacteroides phage vB_BfrS_23, complete genome) position: , mismatch: 1, identity: 0.967

tatggaggcaaattctccgattatccggga	CRISPR spacer
catggaggcaaattctccgattatccggga	Protospacer
.*****************************

7. spacer 2.1|3903054|30|NZ_CP043610|PILER-CR,CRISPRCasFinder matches to MN694251 (Marine virus AFVG_250M445, complete genome) position: , mismatch: 6, identity: 0.8

gattcgaagatatgcaaatgtagcaagtat	CRISPR spacer
aattgacagataagcaaatggagcaagtat	Protospacer
.*** . ***** ******* *********

8. spacer 2.2|3903131|30|NZ_CP043610|PILER-CR,CRISPRCasFinder matches to NZ_CP014093 (Vibrio diabolicus strain FDAARGOS_96 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.767

cgtaaccgttagcttggcgttatgcttggc	CRISPR spacer
cagtaccgttagcttgtcgctatgcttacc	Protospacer
*.  ************ **.*******. *

9. spacer 2.2|3903131|30|NZ_CP043610|PILER-CR,CRISPRCasFinder matches to NZ_CP013486 (Vibrio alginolyticus strain ATCC 33787 plasmid pMBL128, complete sequence) position: , mismatch: 7, identity: 0.767

cgtaaccgttagcttggcgttatgcttggc	CRISPR spacer
cagtaccgttagcttgtcgctatgcttacc	Protospacer
*.  ************ **.*******. *

10. spacer 2.2|3903131|30|NZ_CP043610|PILER-CR,CRISPRCasFinder matches to NZ_CP046774 (Vibrio alginolyticus strain 2014V-1011 plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.767

cgtaaccgttagcttggcgttatgcttggc	CRISPR spacer
cagtaccgttagcttgtcgctatgcttacc	Protospacer
*.  ************ **.*******. *

11. spacer 2.2|3903131|30|NZ_CP043610|PILER-CR,CRISPRCasFinder matches to NZ_CP046807 (Vibrio alginolyticus strain 2439-01 plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.767

cgtaaccgttagcttggcgttatgcttggc	CRISPR spacer
cagtaccgttagcttgtcgctatgcttacc	Protospacer
*.  ************ **.*******. *

12. spacer 2.9|3903670|30|NZ_CP043610|PILER-CR,CRISPRCasFinder matches to NC_048849 (Enterobacter phage vB_EclM_CIP9, complete genome) position: , mismatch: 7, identity: 0.767

acgaagttgaagaacatcaaacttagaaga	CRISPR spacer
cggaagttgaacaacatcatacttaggatt	Protospacer
  ********* ******* ******.*  

13. spacer 2.13|3903977|29|NZ_CP043610|PILER-CR,CRISPRCasFinder matches to NZ_CP045269 (Bacillus megaterium strain FDU301 plasmid pFDU301G, complete sequence) position: , mismatch: 7, identity: 0.759

gcaacctgaaaagaaggtaatt--gaccagc	CRISPR spacer
tcaacttgaaaagaaggtaatttctatta--	Protospacer
 ****.****************   *..*  

14. spacer 2.13|3903977|29|NZ_CP043610|PILER-CR,CRISPRCasFinder matches to NZ_CP039853 (Salinimonas sp. KX18D6 plasmid plas12, complete sequence) position: , mismatch: 7, identity: 0.759

gcaacctgaaaagaaggtaattgaccagc	CRISPR spacer
tcaatctgaaaagcaggtaattgaagtac	Protospacer
 ***.******** **********   .*

15. spacer 2.2|3903131|30|NZ_CP043610|PILER-CR,CRISPRCasFinder matches to NZ_CP017191 (Xanthomonas campestris pv. vesicatoria str. 85-10 plasmid p_XCV_1, complete sequence) position: , mismatch: 8, identity: 0.733

cgtaaccgttagcttggcgttatgcttggc	CRISPR spacer
ctgaaccgttagcttggcgttctggaacga	Protospacer
*  ****************** **    * 

16. spacer 2.2|3903131|30|NZ_CP043610|PILER-CR,CRISPRCasFinder matches to NZ_CP018463 (Xanthomonas euvesicatoria strain LMG930 plasmid pLMG930.2, complete sequence) position: , mismatch: 8, identity: 0.733

cgtaaccgttagcttggcgttatgcttggc	CRISPR spacer
ctgaaccgttagcttggcgttctggaacga	Protospacer
*  ****************** **    * 

17. spacer 2.2|3903131|30|NZ_CP043610|PILER-CR,CRISPRCasFinder matches to NC_007507 (Xanthomonas campestris pv. vesicatoria str. 85-10 plasmid pXCV183, complete sequence) position: , mismatch: 8, identity: 0.733

cgtaaccgttagcttggcgttatgcttggc	CRISPR spacer
ctgaaccgttagcttggcgttctggaacga	Protospacer
*  ****************** **    * 

18. spacer 2.6|3903439|30|NZ_CP043610|PILER-CR,CRISPRCasFinder matches to NZ_CP023318 (Bacillus megaterium strain A plasmid p1, complete sequence) position: , mismatch: 8, identity: 0.733

aggagcaacccaagactttaaagtatcagt	CRISPR spacer
aggagcaaccaaagactttaaaagaaattc	Protospacer
********** ***********. *    .

19. spacer 2.5|3903362|30|NZ_CP043610|PILER-CR,CRISPRCasFinder matches to NC_014534 (Gloeothece verrucosa PCC 7822 plasmid Cy782202, complete sequence) position: , mismatch: 9, identity: 0.7

tatggaggcaaattctccgattatccggga	CRISPR spacer
atagggggcaaattctccgcttatcccctc	Protospacer
   **.************* ******    

20. spacer 2.9|3903670|30|NZ_CP043610|PILER-CR,CRISPRCasFinder matches to HQ634189 (Cyanophage Syn30 genomic sequence) position: , mismatch: 9, identity: 0.7

acgaagttgaagaacatcaaacttagaaga	CRISPR spacer
gaatcgttgaagactatcaaacttagaatt	Protospacer
. .  ******** .*************  

21. spacer 2.9|3903670|30|NZ_CP043610|PILER-CR,CRISPRCasFinder matches to AP014858 (Vibrio phage RYC DNA, complete sequence) position: , mismatch: 9, identity: 0.7

acgaagttgaagaacatcaaacttagaaga	CRISPR spacer
ttgaagtagaagaacatgaaacttatttcg	Protospacer
 .***** ********* *******    .

22. spacer 1.1|143892|34|NZ_CP043610|PILER-CR matches to NC_023559 (Oenococcus phage phi9805, complete genome) position: , mismatch: 12, identity: 0.647

aacaaaaatactaagtatttgtttgataagcaag	CRISPR spacer
tttaaaattattaagtatttgtttgatttctctc	Protospacer
  .**** **.****************   .   

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 1333774 : 1339282 7 Faecalibacterium_phage(16.67%) NA NA
DBSCAN-SWA_2 1355196 : 1369202 12 Nitratiruptor_phage(25.0%) portal,terminase,tail,head,capsid NA
DBSCAN-SWA_3 1924191 : 1939868 14 unidentified_phage(87.5%) NA NA
DBSCAN-SWA_4 2437074 : 2486588 52 unidentified_phage(25.0%) integrase,protease,transposase attL 2428005:2428020|attR 2489942:2489957
DBSCAN-SWA_5 3456246 : 3483505 23 Hokovirus(14.29%) holin,capsid,tail,integrase,head,tRNA,protease attL 3447443:3447457|attR 3482249:3482263
DBSCAN-SWA_6 3990607 : 4047663 51 Pseudomonas_phage(28.57%) integrase,transposase attL 4003971:4003986|attR 4054990:4055005
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Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
NZ_CP043610.1|WP_005809166.1|4391304_4391733_-|hypothetical-protein 4391304_4391733_- 142 aa aa 40 NA NA No NA
2. NZ_CP043609
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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 0 : 6762 9 Geobacillus_virus(50.0%) transposase NA
DBSCAN-SWA_2 18517 : 23072 6 Salmonella_phage(66.67%) NA NA
DBSCAN-SWA_3 33091 : 37000 1 Feldmannia_species_virus(100.0%) NA NA
DBSCAN-SWA_4 52969 : 70995 12 Klebsiella_phage(16.67%) transposase,integrase attL 61217:61230|attR 74572:74585
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage