CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Prophage number
NZ_CP042916	Rhodococcus qingshengii strain RL1 plasmid unnamed1, complete sequence	0 crisprs	NA	0
NZ_CP042917	Rhodococcus qingshengii strain RL1 chromosome, complete genome	1 crisprs	cas3,DinG,DEDDh,csa3,WYL,cas4,RT	1
NZ_CP042915	Rhodococcus qingshengii strain RL1 plasmid unnamed2	0 crisprs	csa3,PD-DExK,csf1gr8,csf4gr11,csf2gr7,csf3gr5	5

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP042917_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP042917_1

4707395-4707506

Orphan

Consensus_repeat	Method
GGCACCAACGCTCTCGTCGACAACCCGTTCA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP042917_1

>merge|NZ_CP042917|1|4707395-4707506|CRISPRCasFinder
GGCACCAACGCTCTCGTCGACAACCCGTTCACCTTCGAGCCGGTTGCCGAGGCAACGTCCGCACACGCCCTGCAGGGTGTGGGCACCAACGCCCTCGTCGACAACCCGTTCA

>NZ_CP042917|1|1|4707395-4707506|CRISPRCasFinder
GGCACCAACGCTCTCGTCGACAACCCGTTCA	CCTTCGAGCCGGTTGCCGAGGCAACGTCCGCACACGCCCTGCAGGGTGTG
GGCACCAACGCCCTCGTCGACAACCCGTTCA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP042917.1\|WP_003943598.1\|4714078_4714519_-\|PAS-domain-S-box-protein	unknown	unknown	gnl\|CDD\|379177
NZ_CP042917.1\|WP_042453265.1\|4698678_4699926_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP042917.1\|WP_080552796.1\|4712422_4713214_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|224662
NZ_CP042917.1\|WP_042920629.1\|4704036_4704831_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224045
NZ_CP042917.1\|WP_050657051.1\|4708423_4709854_+\|CocE/NonD-family-hydrolase	unknown	unknown	gnl\|CDD\|225487
NZ_CP042917.1\|WP_007735884.1\|4715367_4716489_-\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|223650
NZ_CP042917.1\|WP_047272718.1\|4707614_4708427_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|274832
NZ_CP042917.1\|WP_003943539.1\|4714630_4715371_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|213222
NZ_CP042917.1\|WP_050657052.1\|4703059_4704040_-\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|238568
NZ_CP042917.1\|WP_149357867.1\|4699994_4701641_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|340879
NZ_CP042917.1\|WP_007735909.1\|4702093_4702378_+\|SHOCT-domain-containing-protein	unknown	unknown	gnl\|CDD\|378276
NZ_CP042917.1\|WP_003943606.1\|4713445_4714072_+\|TetR/AcrR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224228
NZ_CP042917.1\|WP_003943587.1\|4716528_4717731_+\|sensor-histidine-kinase	unknown	unknown	gnl\|CDD\|226951
NZ_CP042917.1\|WP_042920630.1\|4704827_4705895_-\|iron-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|376439
NZ_CP042917.1\|WP_003944177.1\|4698072_4698660_-\|DinB-family-protein	unknown	unknown	gnl\|CDD\|368218
NZ_CP042917.1\|WP_007735911.1\|4701644_4702097_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP042917.1\|WP_042920631.1\|4705979_4707239_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|340863
NZ_CP042917.1\|WP_030535883.1\|4711183_4712476_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|274674
NZ_CP042917.1\|WP_042920627.1\|4702379_4703063_-\|SagB/ThcOx-family-dehydrogenase	unknown	unknown	gnl\|CDD\|188352
NZ_CP042917.1\|WP_050657050.1\|4709846_4711187_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|274674

Protein	Function_ID	Function_description	E-value
NZ_CP042917.1\|WP_042920630.1\|4704827_4705895_-\|iron-ABC-transporter-permease	gnl\|CDD\|376439	pfam01032, FecCD, FecCD transport family. This is a sub-family of bacterial binding protein-dependent transport systems family. This Pfam entry contains the inner components of this multicomponent transport system.	8.01281e-91
NZ_CP042917.1\|WP_003943598.1\|4714078_4714519_-\|PAS-domain-S-box-protein	gnl\|CDD\|379177	pfam13426, PAS_9, PAS domain.	3.26675e-11
NZ_CP042917.1\|WP_080552796.1\|4712422_4713214_-\|hypothetical-protein	gnl\|CDD\|224662	COG1748, LYS9, Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism].	0.00132843
NZ_CP042917.1\|WP_042920629.1\|4704036_4704831_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224045	COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism].	3.98698e-101
NZ_CP042917.1\|WP_050657050.1\|4709846_4711187_+\|hypothetical-protein	gnl\|CDD\|274674	TIGR03604, hypothetical_protein, thiazole/oxazole-forming peptide maturase, SagD family component. Members of this protein family include enzymes related to SagD, previously referred to as a scaffold or docking protein involved in the biosynthesis of streptolysin S in Streptococcus pyogenes from the protoxin polypeptide (product of the sagA gene). Newer evidence describes an enzymatic activity, an ATP-dependent cyclodehydration reaction, previously ascribed to the SagC component. This protein family serves as a marker for widely distributed prokaryotic systems for making a general class of heterocycle-containing bacteriocins.	1.33798e-67
NZ_CP042917.1\|WP_007735884.1\|4715367_4716489_-\|ABC-transporter-permease	gnl\|CDD\|223650	COG0577, SalY, ABC-type antimicrobial peptide transport system, permease component [Defense mechanisms].	1.73425e-11
NZ_CP042917.1\|WP_047272718.1\|4707614_4708427_+\|hypothetical-protein	gnl\|CDD\|274832	TIGR03882, hypothetical_protein, bacteriocin biosynthesis cyclodehydratase domain. This model describes a ThiF-like domain of a fusion protein found in clusters associated with the production of TOMMs (thiazole/oxazole-modified microcins), small bacteriocins with characteristic heterocycle modifications. This domain is presumed to act as a cyclodehydratase, as do members of the SagC family modeled by TIGR03603.	5.29523e-05
NZ_CP042917.1\|WP_003943539.1\|4714630_4715371_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|213222	cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein. This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.	6.92183e-80
NZ_CP042917.1\|WP_050657052.1\|4703059_4704040_-\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|238568	cd01148, TroA_a, Metal binding protein TroA_a. These proteins are predicted to function as initial receptors in ABC transport of metal ions in eubacteria. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains.	1.80907e-45
NZ_CP042917.1\|WP_149357867.1\|4699994_4701641_+\|MFS-transporter	gnl\|CDD\|340879	cd17321, MFS_MMR_MDR_like, Methylenomycin A resistance protein (also called MMR peptide) and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily. This family is composed of bacterial, fungal, and archaeal multidrug resistance (MDR) transporters including several proteins from Bacilli such as methylenomycin A resistance protein (also called MMR peptide), tetracycline resistance protein (TetB), and lincomycin resistance protein LmrB, as well as fungal proteins such as vacuolar basic amino acid transporters, which are involved in the transport into vacuoles of the basic amino acids histidine, lysine, and arginine in Saccharomyces cerevisiae, and aminotriazole/azole resistance proteins. MDR transporters are drug/H+ antiporters (DHA) that mediate the efflux of a variety of drugs and toxic compounds, and confer resistance to these compounds. For example, MMR confers resistance to the epoxide antibiotic methylenomycin while TetB resistance to tetracycline by an active tetracycline efflux. MMR-like MDR transporters belong to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	3.90275e-22
NZ_CP042917.1\|WP_007735909.1\|4702093_4702378_+\|SHOCT-domain-containing-protein	gnl\|CDD\|378276	pfam09851, SHOCT, Short C-terminal domain.	2.92733e-06
NZ_CP042917.1\|WP_003943606.1\|4713445_4714072_+\|TetR/AcrR-family-transcriptional-regulator	gnl\|CDD\|224228	COG1309, AcrR, Transcriptional regulator [Transcription].	1.14936e-09
NZ_CP042917.1\|WP_003943587.1\|4716528_4717731_+\|sensor-histidine-kinase	gnl\|CDD\|226951	COG4585, COG4585, Signal transduction histidine kinase [Signal transduction mechanisms].	2.95725e-52
NZ_CP042917.1\|WP_050657051.1\|4708423_4709854_+\|CocE/NonD-family-hydrolase	gnl\|CDD\|225487	COG2936, COG2936, Predicted acyl esterases [General function prediction only].	1.51943e-33
NZ_CP042917.1\|WP_003944177.1\|4698072_4698660_-\|DinB-family-protein	gnl\|CDD\|368218	pfam04978, DUF664, Protein of unknown function (DUF664). This family is commonly found in Streptomyces coelicolor and is of unknown function. These proteins contain several conserved histidines at their N-terminus that may form a metal binding site.	4.21422e-42
NZ_CP042917.1\|WP_042920631.1\|4705979_4707239_-\|MFS-transporter	gnl\|CDD\|340863	cd06173, MFS_MefA_like, Macrolide efflux protein A and similar proteins of the Major Facilitator Superfamily of transporters. This family is composed of Streptococcus pyogenes macrolide efflux protein A (MefA) and similar transporters, many of which remain uncharacterized. Some members may be multidrug resistance (MDR) transporters, which are drug/H+ antiporters (DHAs) that mediate the efflux of a variety of drugs and toxic compounds, conferring resistance to these compounds. MefA confers resistance to 14-membered macrolides including erythromycin and to 15-membered macrolides. It functions as an efflux pump to regulate intracellular macrolide levels. The MefA-like family belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	1.1977e-53
NZ_CP042917.1\|WP_030535883.1\|4711183_4712476_+\|hypothetical-protein	gnl\|CDD\|274674	TIGR03604, hypothetical_protein, thiazole/oxazole-forming peptide maturase, SagD family component. Members of this protein family include enzymes related to SagD, previously referred to as a scaffold or docking protein involved in the biosynthesis of streptolysin S in Streptococcus pyogenes from the protoxin polypeptide (product of the sagA gene). Newer evidence describes an enzymatic activity, an ATP-dependent cyclodehydration reaction, previously ascribed to the SagC component. This protein family serves as a marker for widely distributed prokaryotic systems for making a general class of heterocycle-containing bacteriocins.	8.72045e-67
NZ_CP042917.1\|WP_042920627.1\|4702379_4703063_-\|SagB/ThcOx-family-dehydrogenase	gnl\|CDD\|188352	TIGR03605, antibiot_sagB, SagB-type dehydrogenase domain. SagB of Sterptococcus pyogenes participates in the maturation of streptolysin S from a ribosomally produced precursor polypeptide. Chemically similar systems operate on highly diverse sets of bacteriocin precursors in numerous other bacteria. This model describes a domain within SgaB and homologous regions from other proteins, many of which appear to be involved in biosynthesis of secondary metabolites. While some substrates may be intermediates in non-ribosomal peptide syntheses, others are involved in heterocycle-containing bacteriocin biosynthesis, and can be found near SgaC-like (see TIGR03603, cyclodehydratase) and SgaD-like (see TIGR03604, "docking") proteins. Members of this domain family are heterogeneous in length, as many have a partial second copy of the domain represented here. The incomplete second domain scores below the cutoffs to this model in most cases.	4.20312e-29

>NZ_CP042917.1|WP_042920631.1|4705979_4707239_-|MFS-transporter
MSETPTTGSVEAQPHVFRDRSFRLFFTARTIAVAGAAVTGVAMPILVFDISRSPFLTSLAAAGTVLPYLVFGLFAGAVADRVNRRTVILCAQAVAALALASIPAAQALGVLTAWHAVGVSMCIGTCFVWFDAAAFGALPALVGRQRIPAANSALWTSSTLIDVVFPAIAGVLVASIGPAYALGADALAYVLAGLAMASIGASFSITPAAPKKSGTGIARDIREGLSFLWRSPLLRALTGVGFVNSLTQGAVTALLVVYASERLGISTSSPMIGAVWTAVSVGGVVGALVLPRLPAQWPVGAITVGALTIAPVVLFVVATTGNTGAAITALVVYSGCATVTILNGIGARQRLTPDRLQGRVNTTARMVAWGGSPVGALIAGAIAGRWDIGTAYLVACIFALVGALFAWASALRTDPYPHK
>NZ_CP042917.1|WP_042920630.1|4704827_4705895_-|iron-ABC-transporter-permease
MTLTSEAAPRVPSRPHPVGERGYVPFLLATAVVLVAVSTVAVWSGAASVSFADVFAVLYAHVGGPPVDPLLDRIVWGLRVPRILIAALAGAGLSLAGAVLQALVRNPIADPYILGVGSGASFGAVLIMTTGIGTGLSIGVPVAAFLGAMVSLIAVLVLGRREGMLVPLRMVLAGVAIGYLLSAATSFVQLRADPSQLSGVLFWLLGSVSGASWSDLGVPAAVITVCAAILLTQSRQLNALAMGDESAQSVGVDVRRTRLLLLVIASLLTAVVVSVAGGIGFVGLLVPHAVRLLVGSDHGKLLPATALVGATFLVIVDLAARMLDAPNELPLGIITAGLGAPFFLWLLRRDGGAQS
>NZ_CP042917.1|WP_042920629.1|4704036_4704831_-|ABC-transporter-ATP-binding-protein
MRLSASGIHVVRGGRLVVSGVDLEAPEGSVVGLVGPNGSGKSSLLRALYRSMKPRSGIVKVDEVNVWDDLSPRSAARIIGVVGQEHSSDFSFSVREVVATGRTPHHSAFSRLGEIDRDIVSAALVRTGMQGFGSRLFAELSGGEKQRVMLARAIAQQPSLLVLDEPTNHLDIRAQLELMELVAELGTTTIVAIHELALAAAYCDYVCLLSGGVVVATGPTAEVLTEDLLSEVFGVQVHLGTHPLTGRPLLSFAPPLLHTKEAVS
>NZ_CP042917.1|WP_050657052.1|4703059_4704040_-|ABC-transporter-substrate-binding-protein
MKSSIRTAALLCSAVTATAVLTACGNSTADSAASSSEKITVTNCDREVTVPKTAERIVSLYPSMTELLIQLGAADRIVGQSNTDLSPPSPELADQFAAVPVLSAGVPAKEALLDARPDLIVSDGEYWFDGDRLQTMDELRDLGIPIFVNSGYCHKAVTEGRIDDVWSDLDGLGALTGTSDAAATLLADGKKSLAATEASVAGQEPVPTVMVQVSEGQSYALARGLYSSVLEAAGGSNLFENDLPDGKYFGQVATESVLAKSPKAVLVVYSTESARESTLDAARTAFAGTPAAASNAIFAVPEAWFAGELVSIDGAGEVSRLLHPGS
>NZ_CP042917.1|WP_042920627.1|4702379_4703063_-|SagB/ThcOx-family-dehydrogenase
MTALERIEAVVSLHAVLDRTVSPSELPFDEHALPPVTCESVELPAATPLPACGFADVLQARRSRYDPAQTVLRAGELSNVLHHSLVSSPTAGGMRELTLSFVLSRPGDELGAGVYRYARGRAEAVRPGDVREHLRASLLQPEFVDVFPVLLFVVADVEAPLEKYAMRHYRTMHVDAGVLVQNLYLVTEAMGLAGCAIAGFTDARVASLLNLATTQLPVMAFALGRRS
>NZ_CP042917.1|WP_007735909.1|4702093_4702378_+|SHOCT-domain-containing-protein
MSFLRRAGRVAVASSIHGNVQRRQRTRWAAEDQARAAQAQPVPPIPDLPPLPPQAAPAASMDLKLEQLTKLGELKNAGVLTEAEFETQKARILA
>NZ_CP042917.1|WP_007735911.1|4701644_4702097_+|hypothetical-protein
MSNQDQFGPIEYVAVEFPGGAPTSAGFEQLLTLVDSGVIRILDLEFVTKAADGSVAVVPASTFELADFDLAQFDGAASGLLDAGDIAAVGDELATGSVAAVLVYEELAILPVIDAWTRSGAKIVTEGHLSLDELATALDNTAPGNTEKDA
>NZ_CP042917.1|WP_149357867.1|4699994_4701641_+|MFS-transporter
MSVKPGAAATTAAVSTASWLPLIVVVLTQIQASFAVNALTVSMAGITTDLDTPATSVGTAITAGTFAMAAFILLGAKIGARYGTRLVFQIAVAIHGLAMAAVALSQSPAMLFVAQAASGAVIALIAPALTVFIATNFSGDQQAKAIGYLAAAIPAAGVLALLIAGSFATTIGWRYSFALVVALAVVNLILSFRVKPVPPQKDITIDWAGAAIAAVAVILLSFGFSGLNSWGVILATDAAPFSVIGVSPAAILIVLGTICAQGFFQWTRSRKAQNKPQLFNLDVLKTGAERATTICMATMMFVGTAANFLIPLYMQIIQGRSSLQTSFSIIPYTLSIFIASTVVARLYKTYSPRLIARAGFVVVAAGLILLAFTIRGDWHQIFVVIGLITLGLGQGAIVALVFNTLLTAAPKELAGDVGTWRGLVHNMSGSVGIAVASVFAVGILGSLVSSQLIDNPTIPASLKVESGINLDQVNFVPNDQLVVTLENTSATQAQIDEAIRINTEARLRALRTSLLVLAGLSLLAIIPAGRMPDEVPALEEPQPTKGKK
>NZ_CP042917.1|WP_042453265.1|4698678_4699926_+|hypothetical-protein
MEQTLTAVEDLTEVASRAVAAERDARSVRWHNPAAVRKAAAAVRDSLDDERSALSRPSYSGLSPSPHMARQLELITTLQPPLPADAGIGTAAQAEADAVAAVTTARIALRAAHLAVLEARVAALDAGDTDTVAAAIRGYVPLNSGNPVVRHVQDLGSRIREEARHVVSGKPRSIAFRLGLSLGMGLAYLAFIRLFQWDAKEDRLPYLALYALSGVVGSVVCTNALSFDAGRVRAALSGGTRLWHVLVAKNAVMLLLVGSAGFLLSAVLAWRSGSSADLVKACGQVLTMILLWLGVANVMSVSLPLRAEPMTARRHDGTWKQFLLSFVISYGVGLIVNLMLYWRVWAKTTLLEQMGGPWIPVLLLLASAAATWLLLTVLAVLLAEQPRFRRALHREMVVYREETNHLQATIQHNSG
>NZ_CP042917.1|WP_003944177.1|4698072_4698660_-|DinB-family-protein
MTTNSEKEDLQRYLQAARDALVWKLDGLSEYDIRRPMTRTGTNLLGLVKHMIGVELGYFGPTFGRRVPDLPAWLRSEELNVDMWARADESTADIVETYRRTWAFADATIEEHDLDAPGFVKHWPEDRRDVTLHRILVHVVTEIHRHAGHADIVRELIDGAAGMKAGDNNLAPGDEAWWAEYTDRLETAAREAHHA
>NZ_CP042917.1|WP_047272718.1|4707614_4708427_+|hypothetical-protein
MYALADGHQLYPTTDGVWHYLTPDENAVTIGAPAEDLAELDNFLRRSGSVLGPGAIEIADALVSRGVLAVPGQVPEIPRPQRVLMDGIGPVADACIALLSKALPHLEVVSTTAPIEDDVASSDLVLSVAGAPPHDEWSELDTWCRRNQTPWQRVHAELGEICIGPFFDGIGSASYRDVCGRRLAASRVPDHLQALWNHLAGSEPRPLELEPTAAAMASALACSDVVAGVHGAPPSHLHHQIRMNPRTLMMTRHPVLPLPGGVLEPAPTLR
>NZ_CP042917.1|WP_050657051.1|4708423_4709854_+|CocE/NonD-family-hydrolase
MISLGVKIPAADGSSLATDVLLPPDSSPRGLIVIRTPYGRGWHLAEGIEWRLRGIAFICQDVRGRHDSTGSWEPYVHEREDSAALAEWLQDQPWTPECVIASGASYAAGTAWAFATETNSADRSFRVDGVVSKVPTIGSDRVKRDPSGILLLAEHLAWWGEHGDSSSSREGFIPALMRSDSSLLEHLPVQSMIEEVGLTSDSPGWLTPILRARKREDFGGDDLVSADELSELDIAGLHIGGWDDAMIRETLRHFTSVGRGPQSLIVGPWAHDLRPGRVGETSFGRLQVEWMESVFAARPLTINRVFDRGVGEWSTEPFVTGANRVRLEPDPRTAPFNFTHHADEGRNDGVVWTFDMEVECVLSGMPSVELTVHSPEGEADWIVELSVVDSAGVTRSIARGAGVSLCSGTLTIDLDPVLHTVRAGDVLTLRIAGSDFPRLARNLGDGDRYRGTRSTALHQSFSGSLTLPIRGGTDGG
>NZ_CP042917.1|WP_050657050.1|4709846_4711187_+|hypothetical-protein
MDDLLVDARSGVLTSLEPHIRSDMPTGWVGWAARVADTRNFGGSGSLFRADPYGFGASIRNDAAARGAATGEAVERYCGNVVPEDLVRSSASALELAGSRVVDPAKFALYSEDQYRLPGFPFVPFASDLNIRWALGHTMDEKAPTYVPAALTYLGYYTGTRRCEPPIASLQYAGIAAGRSRDEAEMSALLELLERDATALWWCGDRSQPAIELSDWERLPAHRQLGDLESQTRSVRVLLLPSPFGIPVAAAWIRDDRRGLVALGTACRPTVEAAVSKALVEAYAVLAITIDLADPDGPTWRSVADGTLPAHLYKPFRADRRYRDEFDPQWKDIVDLPTVAQLYLDPTMALAAEEHLFDYTETLSVSKIPDEAPLDLASLVAFLTSRGHQPISVDLTTGDISIAGLHVVRVLTPGLYNNAPAAFPLLGGSRLTSASTTHLHLPVPLA
>NZ_CP042917.1|WP_030535883.1|4711183_4712476_+|hypothetical-protein
MTSSLVDRRTGIIRELVDAVVPQHFPPEFKLIHSYVSDSARFSPWSSDSAGAGYCFDLGNRARPTAAAIGEAVERYCGNIVAKPIVRGSADALIGASIDLSQLARFDAAQYARPQFPFVEPTDDLEMDWTRGADLITGSDIWVPAELVWGSYPHFVARTGPAISPVAQAGLAAGPSVKFAIDNALREIVERDAMTLSWTGRRGVRVVTGMPEALLRLGNHDSLSTRWISFESDFEIPVLGALVCDRLTGYSTMGTACHEDAQTAAFKSLGEALQLQLLSADYDNPQSGIGRAAASPTSPLAPWRADRSYAGAYRSDFADVMDYGCHLQLHLDPEIQARFESELVGAVVGEVGLDSLTSAAGTESALTAAGFRPAWVDLTTTDVLHAGLHVVRVVVPGCLTNAAAGLPFLGSPRLVDSLAGRSARTIPLPH
>NZ_CP042917.1|WP_080552796.1|4712422_4713214_-|hypothetical-protein
MVNASGFEDVRLADEAVRGGAAFVDITATSSYCEELEAVDGPVLMGVGLAPGLTSVLATEAHRLGDGPVDILIGLGGGELHGPAATAWTYGMLGTRFPDPDGRSVRNYTGMKTFRIPADATGYRTGPAVRADFSDQHALTRDLGVPVRTYLRLDTSTATLGLAAMTWAPALQKVVPKKLWGSDRWVAMARADTGPALWVSGRSQSVATAAIAARAVQVIRDAAISKPTWFHAVETTESLQAAVPELSVRQWDGASRSSGKTVH
>NZ_CP042917.1|WP_003943606.1|4713445_4714072_+|TetR/AcrR-family-transcriptional-regulator
MTEVLREDTSARRKIIEAAREVFVDPGYAAATIKQLAAAAGVSVQSVYFVFGNKPSVLSALLDVAVAGDEEKTATLDRPWVAAALGAPHPLGQLRIQVHHGRLILERTADILLALRAAASADEDAARLWQINRTQRRTVQEHLMVGIVEKAPTVDLETAVNVALTLLSPETYTDLVVGAGWTGQQYEEWVVNTLAATLGLDRTVKSRK
>NZ_CP042917.1|WP_003943598.1|4714078_4714519_-|PAS-domain-S-box-protein
MERRRNVAQPPQSPIADLEQMPALILLDRLPVPVMAVHRDGSIVFANPSFADMLGYPKKAVSALRLQDILYDKDADDVSAEQAHRELSSEPGSVKEFVHSDSTLVRATVSQSLLRRDDDTITLAVLHDLTERLWNNPRHIDDKPTK
>NZ_CP042917.1|WP_003943539.1|4714630_4715371_-|ABC-transporter-ATP-binding-protein
MTMTTGTTVLDIQNVDLTFPDGQSRVTALDDVSLRLHRGEIAAITGPSGSGKSSLLAVASTLIRPDSGHVYLRTPEGSTDIAALSRRAASELRRSSIGIVFQQSNLVSSLTALEQLEVMAHLGQSVFTSRARRKAVKSKAMDLLDAVGLADQSGKRPSQLSGGQRQRVNLARALMNDPQLLVVDEPTSALDQERGAAVMDLIIGVVREREAATLLVTHDRSHLSRMDTVYRVVDGSLAEDQEALAA
>NZ_CP042917.1|WP_007735884.1|4715367_4716489_-|ABC-transporter-permease
MSIRGAMERVCIRESVEASTGKEFTVFVAMRDLRAARGRFALISVVVLLVALLVSFLSGLTAGLRHQNVSAIEAMNADTVVFADTGAGASFDESALTQDQVNAWTSTSKDVDPIGIGRGKAGLADGNQKSVALFGADGGFGDVTPSASGTVVLSEGAARDLGAGAGDQVSVGTQQFTVSAVRGDDWYSHSPVVWMTLDDWQAANPRGGVATVLAVTGASDASATDKAAATTSTTVSGSLDAIGSYKSENGSLTLMTLMLFAISALVIGAFFTVWTIQRTPDIATLKALGATTGSLVRDALGQALIVLIAGVTVGIGLTAVAGSLIGDAMPFVLDASTTVVPAVALIGLGLLGAAFALRFLSTTDPLTALGSAR
>NZ_CP042917.1|WP_003943587.1|4716528_4717731_+|sensor-histidine-kinase
MDEPGPNLAKLGEMHRSPLTPVFAGLQLGLHVLVMALAGVVFLRALIDESDLTATIIALAVIFVAVYLFGVAKRLRGNAARWWLAVLTLVWIATMAVSADAAYLAFGLFFLYLHILRRPWSLLAVTAATAVAVVGTGLHRGWTIAGAVGPIIGAAVAVAIGLGYQALYREAAERGRLIDELMNTREELASTSRDAGKFAERERLAAEIHDTVAQGLSSIQMLLHAAERADPDSPAIRQISLARETAADSLAETRQLIAELTPAALDGQSLADALRRICERASSPELEARSVVEGEAVRLPMPLEATLVRIAQGAVSNVLRHADATRMAVTLTYSDDTVSLDVVDNGRGFDVAVLERGPAESFGLNAIRRRVELQGGTFSIESEPGHTAVAVTFPLEVGEP

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

2390491 : 2398066

Paenibacillus_phage(16.67%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_042450043.1\|2390491_2390965_+	NUDIX domain-containing protein	D0R7J3	Paenibacillus_phage	6.7e-13	31.9
WP_003944744.1\|2391036_2392002_-	class 1b ribonucleoside-diphosphate reductase subunit beta	A0A0N7CCA3	Skermania_phage	7.7e-157	86.8
WP_085989609.1\|2392265_2393090_+	SPFH domain-containing protein	NA	NA	NA	NA
WP_003944723.1\|2393102_2393315_+	hypothetical protein	NA	NA	NA	NA
WP_085989958.1\|2393376_2395536_-	class 1b ribonucleoside-diphosphate reductase subunit alpha	V9VI16	Lactococcus_phage	1.5e-205	51.0
WP_003944767.1\|2395517_2395997_-	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	A0A217ER62	Bacillus_phage	4.5e-09	30.1
WP_003944717.1\|2396079_2396310_-	glutaredoxin-like protein NrdH	V5UN81	Mycobacterium_phage	1.1e-21	64.0
WP_050655125.1\|2396601_2397429_+	siderophore-interacting protein	NA	NA	NA	NA
WP_030534957.1\|2397499_2398066_-	NAD(P)H-dependent oxidoreductase	A0A2P0ZL77	Lactobacillus_phage	4.3e-06	33.9

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_CP042915

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

2752 : 61566

Bacillus_phage(25.0%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_085989961.1\|2752_3914_+\|transposase	IS3 family transposase	A0A1B1P773	Bacillus_phage	1.9e-21	27.5
WP_149357422.1\|3924_4266_-	hypothetical protein	NA	NA	NA	NA
WP_051649808.1\|5130_5907_-	hypothetical protein	NA	NA	NA	NA
WP_042927363.1\|6235_7111_-\|transposase	IS3 family transposase	Q6H9S6	Enterobacteria_phage	2.0e-31	34.9
WP_042927362.1\|7125_7431_-\|transposase	transposase	NA	NA	NA	NA
WP_052959799.1\|8472_9312_+	alpha/beta hydrolase	NA	NA	NA	NA
WP_042926553.1\|9394_9739_-	DUF3703 domain-containing protein	NA	NA	NA	NA
WP_042926555.1\|9735_10245_-	signal peptidase II	NA	NA	NA	NA
WP_080961021.1\|12186_12558_-	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_042926569.1\|12793_14548_-	arsenical pump-driving ATPase	NA	NA	NA	NA
WP_042926560.1\|14565_14964_-	arsenite efflux transporter metallochaperone ArsD	NA	NA	NA	NA
WP_042926572.1\|15004_16072_-	NAD(P)/FAD-dependent oxidoreductase	A0A2H4J2Q2	uncultured_Caudovirales_phage	2.8e-67	49.6
WP_042926563.1\|16138_16549_-	low molecular weight phosphatase family protein	A0A2H4PQT9	Staphylococcus_phage	5.4e-11	35.6
WP_042926565.1\|16577_17006_-	arsenate reductase ArsC	A0A2H4PQT9	Staphylococcus_phage	5.1e-12	34.9
WP_042926574.1\|17060_17714_-	arsenate reductase ArsC	NA	NA	NA	NA
WP_047268969.1\|17740_18835_-	ACR3 family arsenite efflux transporter	NA	NA	NA	NA
WP_047268970.1\|18831_19233_-	helix-turn-helix transcriptional regulator	A0A218MNF3	uncultured_virus	9.7e-13	54.7
WP_042926568.1\|19344_19749_+	MerR family transcriptional regulator	NA	NA	NA	NA
WP_047268971.1\|19745_20105_+	hypothetical protein	NA	NA	NA	NA
WP_042927363.1\|21598_22474_-\|transposase	IS3 family transposase	Q6H9S6	Enterobacteria_phage	2.0e-31	34.9
WP_042927362.1\|22488_22794_-\|transposase	transposase	NA	NA	NA	NA
WP_042926809.1\|23033_23426_+	hypothetical protein	NA	NA	NA	NA
WP_042926806.1\|23528_24644_+	PLP-dependent cysteine synthase family protein	NA	NA	NA	NA
WP_047268972.1\|24640_25930_+	MFS transporter	NA	NA	NA	NA
WP_128638104.1\|26488_27256_+	TVP38/TMEM64 family protein	NA	NA	NA	NA
WP_149357423.1\|31396_31849_+	hypothetical protein	NA	NA	NA	NA
WP_080961184.1\|31870_32734_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_047270572.1\|32751_35055_+	penicillin-binding protein	NA	NA	NA	NA
WP_051720984.1\|35349_35676_-	metal-sensitive transcriptional regulator	NA	NA	NA	NA
WP_030537778.1\|36197_37040_+	hypothetical protein	NA	NA	NA	NA
WP_149357424.1\|37047_38973_+	copper resistance protein CopC	NA	NA	NA	NA
WP_042451146.1\|39522_40164_+	DUF305 domain-containing protein	NA	NA	NA	NA
WP_037127158.1\|40307_41534_+	L,D-transpeptidase family protein	NA	NA	NA	NA
WP_019747377.1\|41933_42293_+	BlaI/MecI/CopY family transcriptional regulator	NA	NA	NA	NA
WP_019747376.1\|42289_43237_+	M56 family metallopeptidase	NA	NA	NA	NA
WP_080712827.1\|43476_44595_-	hypothetical protein	NA	NA	NA	NA
WP_030537783.1\|45292_46057_+	acyl-[acyl-carrier-protein] thioesterase	NA	NA	NA	NA
WP_042925750.1\|46242_47388_-	HAMP domain-containing protein	W8CYF6	Bacillus_phage	5.7e-26	27.3
WP_030537785.1\|47384_48143_-	response regulator transcription factor	W8CYM9	Bacillus_phage	3.3e-38	37.6
WP_080572277.1\|48284_48554_+	hypothetical protein	NA	NA	NA	NA
WP_149357425.1\|48637_50221_+	multicopper oxidase domain-containing protein	NA	NA	NA	NA
WP_042451149.1\|50726_50954_+	heavy-metal-associated domain-containing protein	NA	NA	NA	NA
WP_019747369.1\|51002_53306_+	copper-translocating P-type ATPase	A0A218MNH6	uncultured_virus	4.8e-96	35.9
WP_042451152.1\|53666_56132_+	heavy metal translocating P-type ATPase	A0A218MNH6	uncultured_virus	7.6e-84	32.3
WP_149357426.1\|56128_56860_+	DUF305 domain-containing protein	NA	NA	NA	NA
WP_149357427.1\|57677_58655_-	c-type cytochrome biogenesis protein CcsB	NA	NA	NA	NA
WP_149357428.1\|58641_59106_-	cytochrome c biogenesis protein ResB	NA	NA	NA	NA
WP_003944771.1\|59233_60025_-	ATP-binding protein	K4HZD4	Acidithiobacillus_phage	3.9e-13	26.6
WP_030538069.1\|60024_61566_-\|transposase	IS21-like element IS1415 family transposase	NA	NA	NA	NA

DBSCAN-SWA_2

101224 : 140112

Bacillus_phage(22.22%)

transposase,integrase

attL 109197:109211|attR 127163:127177

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_116058469.1\|101224_102369_-\|transposase	IS3 family transposase	S5WIU1	Leptospira_phage	1.8e-32	35.5
WP_149357436.1\|102553_103381_-	hypothetical protein	NA	NA	NA	NA
WP_047269799.1\|103413_103746_-	hypothetical protein	NA	NA	NA	NA
WP_047269798.1\|104640_105363_-	SOS response-associated peptidase	A0A1P8CX02	Bacillus_phage	7.6e-24	38.1
WP_037131601.1\|105428_105656_+	hypothetical protein	NA	NA	NA	NA
WP_149357437.1\|106015_106990_-	DUF1254 domain-containing protein	NA	NA	NA	NA
WP_149357438.1\|107332_108250_-	ATP-dependent DNA ligase	A0A291AUP8	Sinorhizobium_phage	2.5e-32	34.9
WP_042926035.1\|108255_108594_-	hypothetical protein	NA	NA	NA	NA
WP_042926033.1\|108590_109856_-	phosphopyruvate hydratase	W6LP63	Streptococcus_phage	3.9e-100	50.0
109197:109211	attL	NA	NA	NA	NA
WP_128638071.1\|110183_110708_+	CrcB family protein	NA	NA	NA	NA
WP_042926029.1\|110704_111070_+	fluoride efflux transporter CrcB	NA	NA	NA	NA
WP_064445034.1\|111678_112242_+	histidine phosphatase family protein	NA	NA	NA	NA
WP_051649769.1\|112292_112838_+	universal stress protein	NA	NA	NA	NA
WP_003945410.1\|113031_114315_+\|transposase	IS256 family transposase	A0A218MNI5	uncultured_virus	3.1e-36	37.9
WP_149357439.1\|114370_116848_-\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_149357440.1\|116847_118131_-\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_074447176.1\|118899_119283_+	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_149357441.1\|119275_121228_+	cadmium-translocating P-type ATPase	E4ZFI9	Streptococcus_phage	2.4e-104	39.2
WP_042926744.1\|121224_121749_+	signal peptidase II	NA	NA	NA	NA
WP_149357442.1\|121798_122401_+	cadmium transporter	NA	NA	NA	NA
WP_149357443.1\|122763_124131_-	MBL fold metallo-hydrolase	NA	NA	NA	NA
WP_149357444.1\|124184_124454_-	metal-sensing transcriptional repressor	NA	NA	NA	NA
WP_149357445.1\|124532_125306_-	TSUP family transporter	NA	NA	NA	NA
WP_042926750.1\|125305_125722_-	DUF302 domain-containing protein	NA	NA	NA	NA
WP_070159981.1\|125766_126018_-	DUF2892 domain-containing protein	NA	NA	NA	NA
WP_149357446.1\|126044_128201_-	MMPL family transporter	NA	NA	NA	NA
127163:127177	attR	NA	NA	NA	NA
WP_042926623.1\|129139_129745_+	recombinase family protein	A0A219YA40	Aeromonas_phage	2.4e-23	36.1
WP_051649794.1\|131353_133582_-	Rv1355c family protein	NA	NA	NA	NA
WP_128638090.1\|134575_135664_-	GGDEF domain-containing protein	A0A127AWB9	Bacillus_phage	3.8e-11	29.8
WP_051649796.1\|136873_138037_+\|transposase	IS30 family transposase	W5R8L2	Staphylococcus_phage	8.7e-30	33.1
WP_042926636.1\|138075_138423_+	DUF3024 domain-containing protein	NA	NA	NA	NA
WP_064113782.1\|138681_139083_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_149357447.1\|139104_140112_-\|transposase	IS481 family transposase	NA	NA	NA	NA

DBSCAN-SWA_3

149042 : 204665

Staphylococcus_phage(20.0%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_051649796.1\|149042_150206_-\|transposase	IS30 family transposase	W5R8L2	Staphylococcus_phage	8.7e-30	33.1
WP_042926688.1\|151448_152390_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_003941073.1\|152498_152810_+	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA
WP_149357450.1\|153442_154768_+\|transposase	ISL3 family transposase	A0A2H4PDF8	Mycobacterium_phage	3.7e-194	75.9
WP_149357451.1\|154872_156321_-	aldehyde dehydrogenase family protein	NA	NA	NA	NA
WP_042926696.1\|156407_157274_-	alpha/beta hydrolase	NA	NA	NA	NA
WP_003941837.1\|157331_157736_-	hypothetical protein	NA	NA	NA	NA
WP_042926698.1\|157933_158908_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_075836157.1\|159377_160436_+\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_042926999.1\|160693_162235_+\|transposase	IS21-like element IS1415 family transposase	NA	NA	NA	NA
WP_042927001.1\|162234_163026_+	ATP-binding protein	K4HZD4	Acidithiobacillus_phage	6.6e-13	26.6
WP_042926616.1\|163561_164308_-	respiratory nitrate reductase subunit gamma	NA	NA	NA	NA
WP_083954793.1\|164312_164921_-	nitrate reductase molybdenum cofactor assembly chaperone	NA	NA	NA	NA
WP_149357452.1\|164956_166618_-	nitrate reductase subunit beta	NA	NA	NA	NA
WP_042926611.1\|166617_170346_-	nitrate reductase subunit alpha	NA	NA	NA	NA
WP_042926606.1\|170910_173238_-	FdhF/YdeP family oxidoreductase	NA	NA	NA	NA
WP_042926605.1\|173763_174750_-	membrane protein	NA	NA	NA	NA
WP_042927001.1\|175219_176011_-	ATP-binding protein	K4HZD4	Acidithiobacillus_phage	6.6e-13	26.6
WP_042926999.1\|176010_177552_-\|transposase	IS21-like element IS1415 family transposase	NA	NA	NA	NA
WP_042926415.1\|177952_178141_-	hypothetical protein	NA	NA	NA	NA
WP_003943395.1\|178170_178950_-	SigB/SigF/SigG family RNA polymerase sigma factor	A0A0Y0ATF9	Bacillus_phage	3.9e-18	31.9
WP_141751371.1\|179041_179278_-	hypothetical protein	NA	NA	NA	NA
WP_050794032.1\|179681_179981_+	MerR family transcriptional regulator	NA	NA	NA	NA
WP_003943386.1\|179905_180334_-	hypothetical protein	NA	NA	NA	NA
WP_003943349.1\|180494_180797_-	hypothetical protein	NA	NA	NA	NA
WP_128638081.1\|182442_182661_-	hypothetical protein	NA	NA	NA	NA
WP_037130808.1\|182830_183112_+	hypothetical protein	NA	NA	NA	NA
WP_149357453.1\|185246_187928_-	excinuclease ABC subunit UvrA	A0A1B1IVR3	uncultured_Mediterranean_phage	6.7e-150	33.5
WP_003943355.1\|188130_189324_+	alcohol dehydrogenase catalytic domain-containing protein	NA	NA	NA	NA
WP_149357454.1\|189534_190509_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_003945410.1\|190766_192050_+\|transposase	IS256 family transposase	A0A218MNI5	uncultured_virus	3.1e-36	37.9
WP_149357455.1\|193751_194207_+	hypothetical protein	NA	NA	NA	NA
WP_073513721.1\|194157_194481_-	MerR family transcriptional regulator	NA	NA	NA	NA
WP_149357456.1\|194621_194825_-	hypothetical protein	NA	NA	NA	NA
WP_037130799.1\|195289_195556_+	hypothetical protein	NA	NA	NA	NA
WP_003943350.1\|195663_196227_+	hypothetical protein	NA	NA	NA	NA
WP_003943367.1\|196258_196612_+	hypothetical protein	NA	NA	NA	NA
WP_149357457.1\|196608_198159_+	YihY family inner membrane protein	NA	NA	NA	NA
WP_080552793.1\|198155_198452_+	DUF3618 domain-containing protein	NA	NA	NA	NA
WP_082920567.1\|199307_200006_+\|transposase	IS6 family transposase	A0A0N9RU54	Staphylococcus_phage	1.4e-19	28.4
WP_058036905.1\|200234_200414_+	hypothetical protein	NA	NA	NA	NA
WP_058036904.1\|200702_200924_+	hypothetical protein	NA	NA	NA	NA
WP_003945410.1\|201185_202469_-\|transposase	IS256 family transposase	A0A218MNI5	uncultured_virus	3.1e-36	37.9
WP_070160344.1\|202829_203078_+	hypothetical protein	NA	NA	NA	NA
WP_070160346.1\|203164_203524_-	Lsr2 family protein	A0A160DEV0	Gordonia_phage	1.2e-17	43.7
WP_054186956.1\|203600_204665_-\|transposase	IS630 family transposase	NA	NA	NA	NA

DBSCAN-SWA_4

238297 : 293566

Gordonia_phage(18.18%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_042926232.1\|238297_238579_-\|transposase	transposase	NA	NA	NA	NA
WP_149357462.1\|238661_239777_-\|transposase	IS3 family transposase	A0A160DCU2	Gordonia_phage	1.1e-26	31.6
WP_042926235.1\|239796_240165_-	hypothetical protein	G1JW61	Mycobacterium_phage	8.3e-27	57.0
WP_042926238.1\|240230_240476_-	hypothetical protein	NA	NA	NA	NA
WP_042926241.1\|240472_241981_-	YihY family inner membrane protein	NA	NA	NA	NA
WP_149357463.1\|242032_243046_-	FUSC family protein	NA	NA	NA	NA
WP_149357464.1\|243124_245245_-	molybdopterin-dependent oxidoreductase	NA	NA	NA	NA
WP_044480993.1\|245244_246234_-	xanthine dehydrogenase family protein subunit M	NA	NA	NA	NA
WP_029256721.1\|246233_246740_-	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA
WP_128638075.1\|247046_248999_-	cutinase family protein	A0A166Y6Q9	Gordonia_phage	4.9e-09	32.4
WP_003941261.1\|249301_250372_+	DUF1016 domain-containing protein	Q9JMP5	Wolbachia_phage	1.2e-81	45.3
WP_149357465.1\|250503_251301_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_149357466.1\|251300_253151_-	hypothetical protein	NA	NA	NA	NA
WP_007733685.1\|253179_253479_-	type II toxin-antitoxin system PemK/MazF family toxin	NA	NA	NA	NA
WP_007733686.1\|253478_253715_-	hypothetical protein	NA	NA	NA	NA
WP_030537938.1\|254882_255857_-	DUF2637 domain-containing protein	NA	NA	NA	NA
WP_030537937.1\|256487_256802_-	hypothetical protein	NA	NA	NA	NA
WP_007733691.1\|256798_257581_-	AAA family ATPase	Q8JL10	Natrialba_phage	7.9e-11	25.1
WP_149357467.1\|258413_259670_-\|transposase	IS256 family transposase	A0A220NQR7	Corynebacterium_phage	1.0e-113	53.4
WP_007733695.1\|263371_263629_-	hypothetical protein	NA	NA	NA	NA
WP_042926643.1\|264403_265351_-	hypothetical protein	NA	NA	NA	NA
WP_128638091.1\|265558_265846_-	RES domain-containing protein	NA	NA	NA	NA
WP_030537933.1\|266233_266716_-	polyketide cyclase	NA	NA	NA	NA
WP_149357468.1\|266892_267360_+	hypothetical protein	NA	NA	NA	NA
WP_149357467.1\|267950_269207_-\|transposase	IS256 family transposase	A0A220NQR7	Corynebacterium_phage	1.0e-113	53.4
WP_149357469.1\|269313_269481_-	response regulator transcription factor	NA	NA	NA	NA
WP_149357470.1\|269786_270581_+	hypothetical protein	NA	NA	NA	NA
WP_149357471.1\|270909_271944_-	diiron oxygenase	NA	NA	NA	NA
WP_003943374.1\|272648_272861_+	ribbon-helix-helix protein, CopG family	NA	NA	NA	NA
WP_003943396.1\|272857_273214_+	type II toxin-antitoxin system PemK/MazF family toxin	A0A2K9V2U7	Faecalibacterium_phage	6.6e-05	34.2
WP_007728194.1\|273411_273801_-	helix-turn-helix transcriptional regulator	G9FH51	Rhodococcus_phage	3.2e-05	29.4
WP_149357472.1\|274873_275326_-	hypothetical protein	NA	NA	NA	NA
WP_125053505.1\|276417_276849_-	hypothetical protein	G9FGX7	Rhodococcus_phage	1.1e-06	31.0
WP_021343300.1\|277585_277831_-	hypothetical protein	NA	NA	NA	NA
WP_127160070.1\|278060_278609_-	ATP-binding protein	NA	NA	NA	NA
WP_021343298.1\|278705_278948_-	hypothetical protein	NA	NA	NA	NA
WP_030537927.1\|279135_279369_-	hypothetical protein	NA	NA	NA	NA
WP_042926460.1\|282093_283131_-	methionine synthase	NA	NA	NA	NA
WP_030537925.1\|283151_284144_-	DUF1852 domain-containing protein	NA	NA	NA	NA
WP_030537924.1\|284269_285217_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_042926452.1\|286844_287501_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_149357473.1\|288231_288606_+	hypothetical protein	NA	NA	NA	NA
WP_051721006.1\|288904_289996_-	hypothetical protein	NA	NA	NA	NA
WP_030537918.1\|290221_291106_-	hypothetical protein	NA	NA	NA	NA
WP_042927362.1\|292370_292676_+\|transposase	transposase	NA	NA	NA	NA
WP_042927363.1\|292690_293566_+\|transposase	IS3 family transposase	Q6H9S6	Enterobacteria_phage	2.0e-31	34.9

DBSCAN-SWA_5

319130 : 403764

Tupanvirus(14.29%)

transposase,integrase

attL 342383:342398|attR 404040:404055

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_030537922.1\|319130_320138_-\|transposase	IS481 family transposase	NA	NA	NA	NA
WP_149357488.1\|320284_321136_+	hypothetical protein	NA	NA	NA	NA
WP_149357489.1\|321135_322104_+	hypothetical protein	NA	NA	NA	NA
WP_149357490.1\|322093_323455_+	radical SAM protein	NA	NA	NA	NA
WP_149357491.1\|323461_324616_+	hypothetical protein	NA	NA	NA	NA
WP_149357492.1\|326500_328045_-	AMP-binding protein	Q75ZG1	Hepacivirus	6.8e-30	27.7
WP_149357493.1\|328331_329522_+	TetR family transcriptional regulator	NA	NA	NA	NA
WP_149357494.1\|329540_330680_-	CoA transferase	NA	NA	NA	NA
WP_149357495.1\|330851_332003_-	acyl-CoA dehydrogenase	NA	NA	NA	NA
WP_149357496.1\|332014_332845_-	SDR family oxidoreductase	Q06VL0	Trichoplusia_ni_ascovirus	4.8e-14	28.9
WP_149357497.1\|332859_333273_-	dehydratase	NA	NA	NA	NA
WP_149357498.1\|333269_333728_-	MaoC family dehydratase	NA	NA	NA	NA
WP_149357499.1\|333730_334918_-	lipid-transfer protein	NA	NA	NA	NA
WP_149357500.1\|338096_338966_-	3-alpha,7-alpha, 12-alpha-trihydroxy-5-beta-cholest-24-enoyl-CoA hydratase	NA	NA	NA	NA
WP_149357501.1\|338965_340192_-	CoA transferase	NA	NA	NA	NA
WP_149357544.1\|340252_340906_-	nitroreductase	M1I6Q5	Acanthocystis_turfacea_Chlorella_virus	4.4e-23	29.8
WP_149357502.1\|340940_342566_-	ABC transporter substrate-binding protein	NA	NA	NA	NA
342383:342398	attL	NA	NA	NA	NA
WP_149357503.1\|342654_343323_+	TetR family transcriptional regulator	NA	NA	NA	NA
WP_149357504.1\|343562_345086_-	aldehyde dehydrogenase family protein	NA	NA	NA	NA
WP_149357505.1\|344977_345727_-	enoyl-CoA hydratase	NA	NA	NA	NA
WP_149357506.1\|345723_347325_-	AMP-binding protein	A0A2K9L3I8	Tupanvirus	1.0e-12	21.0
WP_149357507.1\|348427_349375_-	taurine dioxygenase	NA	NA	NA	NA
WP_149357545.1\|349371_349980_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_149357508.1\|350156_351533_-	NAD(P)-binding protein	A0A2K9L3H9	Tupanvirus	1.9e-07	21.3
WP_149357509.1\|351510_351690_+	hypothetical protein	NA	NA	NA	NA
WP_149357510.1\|352564_354115_-	AMP-binding protein	A0A2H4PQM9	Staphylococcus_phage	1.1e-22	22.6
WP_149357511.1\|354304_355897_-	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_149357512.1\|357824_358388_+	hypothetical protein	NA	NA	NA	NA
WP_149357513.1\|359168_359528_+	Lsr2 family protein	A0A160DEV0	Gordonia_phage	5.2e-18	44.5
WP_149357514.1\|359612_359861_-	hypothetical protein	NA	NA	NA	NA
WP_149357515.1\|360119_360320_-	hypothetical protein	NA	NA	NA	NA
WP_149357516.1\|360738_364335_+	DUF3883 domain-containing protein	A0A1B1IUI1	uncultured_Mediterranean_phage	1.6e-53	26.9
WP_149357517.1\|364289_367040_+	DUF1156 domain-containing protein	NA	NA	NA	NA
WP_149357518.1\|367040_370442_+	DUF499 domain-containing protein	NA	NA	NA	NA
WP_149357519.1\|370992_371595_+	hypothetical protein	NA	NA	NA	NA
WP_149357520.1\|372053_374516_-	cutinase family protein	NA	NA	NA	NA
WP_149357521.1\|374736_375342_-	hypothetical protein	NA	NA	NA	NA
WP_149357522.1\|375618_376575_+	recombinase family protein	A0A219YB42	Aeromonas_phage	5.7e-35	45.6
WP_149357523.1\|376608_377712_+	GIY-YIG nuclease family protein	G9IA57	Pseudomonas_phage	2.7e-12	27.8
WP_149357524.1\|378435_378777_+	hypothetical protein	NA	NA	NA	NA
WP_149357467.1\|378883_380140_+\|transposase	IS256 family transposase	A0A220NQR7	Corynebacterium_phage	1.0e-113	53.4
WP_149357525.1\|380933_381998_+\|transposase	IS630 family transposase	NA	NA	NA	NA
WP_149357526.1\|382607_382874_+	WhiB family transcriptional regulator	A0A159B6S6	Tsukamurella_phage	9.9e-06	44.9
WP_149357527.1\|382975_383380_-	hypothetical protein	NA	NA	NA	NA
WP_149357528.1\|384481_385783_-	hypothetical protein	NA	NA	NA	NA
WP_149357529.1\|386123_388526_-	hypothetical protein	NA	NA	NA	NA
WP_149357530.1\|388785_389019_+	hypothetical protein	NA	NA	NA	NA
WP_149357531.1\|390565_391312_-	DUF4839 domain-containing protein	NA	NA	NA	NA
WP_149357532.1\|391929_392454_-	hypothetical protein	NA	NA	NA	NA
WP_149357447.1\|392682_393690_+\|transposase	IS481 family transposase	NA	NA	NA	NA
WP_149357533.1\|393851_394955_-	hypothetical protein	NA	NA	NA	NA
WP_149357534.1\|395892_397251_+	AAA family ATPase	A0A127AW94	Bacillus_phage	1.4e-07	24.5
WP_030537893.1\|397284_397614_+	hypothetical protein	NA	NA	NA	NA
WP_134771770.1\|398204_398744_+	hypothetical protein	A0A142F2I6	Mycobacterium_phage	5.1e-09	36.9
WP_080656770.1\|398715_399528_+	prepilin peptidase	NA	NA	NA	NA
WP_011133407.1\|400021_401281_+\|integrase	site-specific integrase	NA	NA	NA	NA
WP_087503901.1\|401298_403764_+\|integrase	site-specific integrase	NA	NA	NA	NA
404040:404055	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP042917

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NZ_CP042915

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection