CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Prophage number
NZ_CP042331	Bosea sp. F3-2 chromosome, complete genome	2 crisprs	csa3,WYL,DEDDh,cas3,RT	1	3
NZ_CP042332	Bosea sp. F3-2 plasmid pB32-1, complete sequence	0 crisprs	DEDDh,csa3	0	0
NZ_CP042333	Bosea sp. F3-2 plasmid pB32-2, complete sequence	0 crisprs	csa3	0	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP042331_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP042331_1

5863920-5864027

Orphan

Consensus_repeat	Method
CCGCAGCCGGTGCAGCCGCCTCCG	CRISPRCasFinder

2 spacers

The CRISPR arrays of NZ_CP042331_1

>merge|NZ_CP042331|1|5863920-5864027|CRISPRCasFinder
CCGCAGCCGGTGCAGCCGCCTCCGGCGCTGCAGGGGCCTGTGATGCCGCAACCCGTTCAGCCCGCGCCGACGATGCCGATCGAGCCGCAGCCGGTGCAGCCGCCGCCG

>NZ_CP042331|1|1|5863920-5864027|CRISPRCasFinder
CCGCAGCCGGTGCAGCCGCCTCCG	GCGCTGCAGGGGCCTGTGATG
CCGCAACCCGTTCAGCCCGCGCCG	ACGATGCCGATCGAG
CCGCAGCCGGTGCAGCCGCCGCCG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP042331.1\|WP_149133144.1\|5862690_5863575_-\|diaminopimelate-epimerase	unknown	unknown	gnl\|CDD\|234768
NZ_CP042331.1\|WP_149133137.1\|5854594_5855146_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP042331.1\|WP_149133140.1\|5857314_5857731_-\|DUF1236-domain-containing-protein	unknown	unknown	gnl\|CDD\|369096
NZ_CP042331.1\|WP_149133154.1\|5873107_5873530_-\|rhodanese-like-domain-containing-protein	unknown	unknown	gnl\|CDD\|238089
NZ_CP042331.1\|WP_149133152.1\|5870416_5870785_+\|30S-ribosomal-protein-S16	unknown	unknown	gnl\|CDD\|234588
NZ_CP042331.1\|WP_149133141.1\|5858198_5859914_+\|AMP-binding-protein	unknown	unknown	gnl\|CDD\|235923
NZ_CP042331.1\|WP_149133139.1\|5856215_5857235_-\|L,D-transpeptidase-family-protein	unknown	unknown	gnl\|CDD\|224294
NZ_CP042331.1\|WP_149133155.1\|5873534_5874737_-\|aminotransferase-class-I/II-fold-pyridoxal-phosphate-dependent-enzyme	unknown	unknown	gnl\|CDD\|235596
NZ_CP042331.1\|WP_149133151.1\|5868658_5870236_+\|signal-recognition-particle-protein	unknown	unknown	gnl\|CDD\|236780
NZ_CP042331.1\|WP_149133136.1\|5852453_5853644_-\|NADH-quinone-oxidoreductase-subunit-D	unknown	unknown	gnl\|CDD\|180385
NZ_CP042331.1\|WP_149133148.1\|5866482_5867109_-\|LysE-family-transporter	unknown	unknown	gnl\|CDD\|224199
NZ_CP042331.1\|WP_149133149.1\|5867167_5867749_-\|CAP-domain-containing-protein	unknown	unknown	gnl\|CDD\|349398
NZ_CP042331.1\|WP_149134065.1\|5853901_5854576_+\|phosphoribosyltransferase	unknown	unknown	gnl\|CDD\|224837
NZ_CP042331.1\|WP_149133147.1\|5865871_5866474_-\|methyltransferase-domain-containing-protein	unknown	unknown	gnl\|CDD\|379312
NZ_CP042331.1\|WP_149133143.1\|5861406_5862678_-\|tRNA-(N(6)-L-threonylcarbamoyladenosine(37)-C(2))--methylthiotransferase-MtaB	unknown	unknown	gnl\|CDD\|273704
NZ_CP042331.1\|WP_149133153.1\|5872266_5873016_+\|tRNA-(guanosine(37)-N1)-methyltransferase-TrmD	unknown	unknown	gnl\|CDD\|234581
NZ_CP042331.1\|WP_149133142.1\|5860013_5861123_+\|molybdopterin-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|239028
NZ_CP042331.1\|WP_149133150.1\|5867921_5868347_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP042331.1\|WP_149133138.1\|5855486_5855921_+\|CBS-domain-containing-protein	unknown	unknown	gnl\|CDD\|341390
NZ_CP042331.1\|WP_149133146.1\|5864773_5865832_-\|MBL-fold-metallo-hydrolase	unknown	unknown	gnl\|CDD\|293841

Protein	Function_ID	Function_description	E-value
NZ_CP042331.1\|WP_149133144.1\|5862690_5863575_-\|diaminopimelate-epimerase	gnl\|CDD\|234768	PRK00450, dapF, diaminopimelate epimerase; Provisional.	3.15535e-114
NZ_CP042331.1\|WP_149133149.1\|5867167_5867749_-\|CAP-domain-containing-protein	gnl\|CDD\|349398	cd05379, CAP_bacterial, Bacterial CAP (cysteine-rich secretory proteins, antigen 5, and pathogenesis-related 1 proteins) domain proteins. Little is known about bacterial and archaeal members of the CAP (cysteine-rich secretory proteins, antigen 5, and pathogenesis-related 1 proteins) domain family. The wider family of CAP domain containing proteins includes plant pathogenesis-related protein 1 (PR-1), cysteine-rich secretory proteins (CRISPs), and allergen 5 from vespid venom, among others. Studies of eukaryotic proteins show that CAP domains have several functions, including the binding of cholesterol, lipids and heparan sulfate. This group includes Borrelia burgdorferi outer surface protein BB0689, which does not bind to cholesterol, lipids, or heparan sulfate, and whose function is unknown.	3.14904e-29
NZ_CP042331.1\|WP_149133140.1\|5857314_5857731_-\|DUF1236-domain-containing-protein	gnl\|CDD\|369096	pfam06823, DUF1236, Protein of unknown function (DUF1236). This family contains a number of hypothetical bacterial proteins of unknown function. Some family members contain more than one copy of the region represented by this family.	1.34049e-20
NZ_CP042331.1\|WP_149133152.1\|5870416_5870785_+\|30S-ribosomal-protein-S16	gnl\|CDD\|234588	PRK00040, rpsP, 30S ribosomal protein S16; Reviewed.	1.48013e-41
NZ_CP042331.1\|WP_149133141.1\|5858198_5859914_+\|AMP-binding-protein	gnl\|CDD\|235923	PRK07059, PRK07059, Long-chain-fatty-acid--CoA ligase; Validated.	0
NZ_CP042331.1\|WP_149133139.1\|5856215_5857235_-\|L,D-transpeptidase-family-protein	gnl\|CDD\|224294	COG1376, ErfK, Uncharacterized protein conserved in bacteria [Function unknown].	3.68538e-33
NZ_CP042331.1\|WP_149133155.1\|5873534_5874737_-\|aminotransferase-class-I/II-fold-pyridoxal-phosphate-dependent-enzyme	gnl\|CDD\|235596	PRK05764, PRK05764, aspartate aminotransferase; Provisional.	0
NZ_CP042331.1\|WP_149133151.1\|5868658_5870236_+\|signal-recognition-particle-protein	gnl\|CDD\|236780	PRK10867, PRK10867, signal recognition particle protein; Provisional.	0
NZ_CP042331.1\|WP_149133136.1\|5852453_5853644_-\|NADH-quinone-oxidoreductase-subunit-D	gnl\|CDD\|180385	PRK06075, PRK06075, NADH-quinone oxidoreductase subunit D.	0
NZ_CP042331.1\|WP_149133148.1\|5866482_5867109_-\|LysE-family-transporter	gnl\|CDD\|224199	COG1280, RhtB, Putative threonine efflux protein [Amino acid transport and metabolism].	4.98295e-41
NZ_CP042331.1\|WP_149134065.1\|5853901_5854576_+\|phosphoribosyltransferase	gnl\|CDD\|224837	COG1926, COG1926, Predicted phosphoribosyltransferases [General function prediction only].	9.24977e-88
NZ_CP042331.1\|WP_149133147.1\|5865871_5866474_-\|methyltransferase-domain-containing-protein	gnl\|CDD\|379312	pfam13649, Methyltransf_25, Methyltransferase domain. This family appears to be a methyltransferase domain.	1.26237e-12
NZ_CP042331.1\|WP_149133143.1\|5861406_5862678_-\|tRNA-(N(6)-L-threonylcarbamoyladenosine(37)-C(2))--methylthiotransferase-MtaB	gnl\|CDD\|273704	TIGR01579, MiaB-like-C, MiaB-like tRNA modifying enzyme. This clade of sequences is closely related to MiaB, a modifier of isopentenylated adenosine-37 of certain eukaryotic and bacterial tRNAs (see TIGR01574). Sequence alignments suggest that this equivalog performs the same chemical transformation as MiaB, perhaps on a different (or differently modified) tRNA base substrate. This clade is a member of a subfamily (TIGR00089) and spans low GC Gram positive bacteria, alpha and epsilon proteobacteria, Campylobacter, Porphyromonas, Aquifex, Thermotoga, Chlamydia, Treponema and Fusobacterium. [Protein synthesis, tRNA and rRNA base modification].	7.12892e-149
NZ_CP042331.1\|WP_149133153.1\|5872266_5873016_+\|tRNA-(guanosine(37)-N1)-methyltransferase-TrmD	gnl\|CDD\|234581	PRK00026, trmD, tRNA (guanine-N(1)-)-methyltransferase; Reviewed.	5.35893e-134
NZ_CP042331.1\|WP_149133142.1\|5860013_5861123_+\|molybdopterin-dependent-oxidoreductase	gnl\|CDD\|239028	cd02110, SO_family_Moco_dimer, Subgroup of sulfite oxidase (SO) family molybdopterin binding domains that contains conserved dimerization domain. This molybdopterin cofactor (Moco) binding domain is found in a variety of oxidoreductases, main members of this family are nitrate reductase (NR) and sulfite oxidase (SO). .	1.47526e-113
NZ_CP042331.1\|WP_149133154.1\|5873107_5873530_-\|rhodanese-like-domain-containing-protein	gnl\|CDD\|238089	cd00158, RHOD, Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein. The cysteine containing enzymatically active version of the domain is also found in the Cdc25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and certain stress proteins such as senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions (no active site cysteine) are also seen in dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases, where they are believed to play a regulatory role in multidomain proteins.	2.55984e-11
NZ_CP042331.1\|WP_149133138.1\|5855486_5855921_+\|CBS-domain-containing-protein	gnl\|CDD\|341390	cd04622, CBS_pair_HRP1_like, CBS pair domain found in Hypoxic Response Protein 1 (HRP1) -like proteinds. Mycobacterium tuberculosis adapts to cellular stresses by upregulation of the dormancy survival regulon. Hypoxic response protein 1 (HRP1) is encoded by one of the most strongly upregulated genes in the dormancy survival regulon. HRP1 is a 'CBS-domain-only protein; however unlike other CBS containing proteins it does not appear to bind AMP. The biological function of the protein remains unclear, but is thought to contribute to the modulation of the host immune response. The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase).	7.03314e-53
NZ_CP042331.1\|WP_149133146.1\|5864773_5865832_-\|MBL-fold-metallo-hydrolase	gnl\|CDD\|293841	cd16283, RomA-like_MBL-fold, Enterobacter cloacae RomA and related proteins; MBL-fold metallo hydrolase domain. Derepression of the romA-ramA locus results in a multidrug-resistance phenotype. Members of this subgroup belong to the MBL-fold metallo-hydrolase superfamily which is comprised mainly of hydrolytic enzymes which carry out a variety of biological functions. The class B metal beta-lactamases (MBLs) from which this fold was named are only a small fraction of the activities which are included in this superfamily. Activities carried out by superfamily members include class B beta-lactamases, hydroxyacylglutathione hydrolases, AHL (acyl homoserine lactone) lactonases, persulfide dioxygenases, flavodiiron proteins, cleavage and polyadenylation specificity factors such as the Int9 and Int11 subunits of Integrator, Sdsa1-like and AtsA-like arylsulfatases, 5'-exonucleases human SNM1A and yeast Pso2p, ribonuclease J and ribonuclease Z, cyclic nucleotide phosphodiesterases, insecticide hydrolases, and proteins required for natural transformation competence. Classical members of the superfamily are di-, or less commonly mono-, zinc-ion-dependent hydrolases, however the diversity of biological roles is reflected in variations in the active site metallo-chemistry.	1.66878e-70

>NZ_CP042331.1|WP_149133144.1|5862690_5863575_-|diaminopimelate-epimerase
MNALANRRFLKMNGLGNQITVLDLRGTKHVVSEAEARAIAAEPRARFDQLMVLHDAVTPGTDAFVRIYNTDGSEAGACGNGTRCVAWAMVADPQMGDAAKTRLALQTKAGLLPTVREGEALFTVDMGAPRLAWDEIPLAEPFEDTSRFELQIGPIDNPILHTPCAVNMGNPHAVFFVEDPYAYNLEQIGPLLENHPIFPDRANIELAAVKAPDHIVLRVWERGAGITQACGSGACAALVAGVRRELTARKATVSLPGGDLAIEWRESDGHVLMTGPIEFEWEGRIDPALIERAA
>NZ_CP042331.1|WP_149133143.1|5861406_5862678_-|tRNA-(N(6)-L-threonylcarbamoyladenosine(37)-C(2))--methylthiotransferase-MtaB
MTLEVVTFGCRLNIVESEALRLQAEAAGLKDAAIVNSCAVTAEATRQARQAVRHLKREQPDRPVIVTGCAAQIEPARFAAMPEADRVIGNDEKLNPESWAALARSNSLGNADAPAVDKLDVGDIMARTTLRAPVTGRFTGHTRGFVQVQNGCDHRCTFCVIPFGRGNSRSLAADDVIAQCRRLVEAGAREIVLTGVDLTSYGRDLPDQPSLGTLARAILRDLPELPRLRLSSIDAVEVDDTLRDLLATETRLMPHLHLSLQAGDDLILKRMKRRHSRTDAIRFCTEIRTLRPDIVFGADLIAGFPTEDEAMFSRSLALVEECGLSFVHVFPYSARPGTPAARMPQLPGTVVSERAARLRAAAGAAHERHLTERIGRPLSVLTERGNTGRAEDFTLVRFGRDIAAGEIVAATGHAADARALLAA
>NZ_CP042331.1|WP_149133142.1|5860013_5861123_+|molybdopterin-dependent-oxidoreductase
MPHRLAELPLLRRLKPGLHVYDEEALNAEPAIGLLDQQITPIDSFFIRNNGELPEIGDGHDWTLTIDGEVERPTVWTLAGLRQRFETVTVTAVLECAGNGRSQFSPATDGLQWRLGAVGCARWTGVRLADVLEHAGPKPSAVYTAHYAPDRQIGKPEKAALSRGLPMAKALAPETLIAFAMNDEPLPRLHGGPLRIVAPGYPGSAWQKWLDRISLRPVEHDGEKMRGTDYRMPIRPLQPGEALDPANFTVITDMPVKSLITTPVDGFTMKVGERLTVGGFAWSGAIPLASVELSCDSGESWQEVPLQPGEGPFAWRRFEAEVSADQAGPLVIMARARDVAGNCQPLEIAWNPRGYCNNQVQRLRGSVVA
>NZ_CP042331.1|WP_149133141.1|5858198_5859914_+|AMP-binding-protein
MNAIGATQARHDARPWLAHYPPAVPAELDDAKIGTLVDLIRSSCARYANRQAFESFGKTITFAETLRAAEAFAGWLQAKGLKKGDRVALMMPNILAYPAAIFGTLIGGFTVVNINPLYTARELTHQVNDAGARVLVVIENFAHVVEEAKPNLKLDAIVIATAGDLMGFKGKIVNFVARRIKKVVKPFNLPGAVPLQQILTSGAGMTPVTVTSEDVAFLQYTGGTTGVAKGATLTHRNVAANVQQAGLWLEWVLEPPQGRGEYQHVMVTALPLYHIFALTCCCMFLLRIGAKSLLIANPRDIPGFVKTLRSSRFTLISGVNTLYNALANHPEIKNVDFSELRFAVAGGMATQAAVAKQWKAVTGRPIIEGYGLSETSPVATINRPDIQEFTGTIGYPIPSTEIAIRDAEGHDMPLGDSGEICIRGPQVMAGYWNRPDETAKAMTADGFFRSGDIGVMLPDGQIKVVDRMKDMVLVSGFNVYPNEVEDVLASHPGVLEAAVIGLPDEHSGEAVTAFVVRKDQTLTAEELRAYCKENLTGYKVPKQIFFRETLPKTNVGKVLRRALREEVVAKR
>NZ_CP042331.1|WP_149133140.1|5857314_5857731_-|DUF1236-domain-containing-protein
MKKLALAAMLTVIPALAFAQNPQGARGGAAGGAAAGAVGGAIVGGPVGAVVGGVGGAVAGGIVGDNTPRFREYVVEQRVPSYSYGEELRVGTVLPQRGVVYHRVPAEFRVNKEYRYTVVNDRPVLVEPRTRRVVQIIE
>NZ_CP042331.1|WP_149133139.1|5856215_5857235_-|L,D-transpeptidase-family-protein
MPKPVPKSRAVPTIVAVVLLLAAFGNARALTADEINRAGRPVPSSVQRTKPIVQRAKPGAAIVKLQTLLVRQGISPGEIDGMDGENYRKALAQFRRRENLGAGDAVDDATWRALGGDSSQDIVTSYTVTEADARYVFSKRIPRDYARQARMRRLAYSRAPEMFAERFKMGEGLLRALNPRAHYRAAGETLLVIAAGRTAPRAEVQLIEADKRTGRVTAYGSQGEMIASYPATIGSGDTPSPEGEYQVARVVRQPTYHYDPVKNFQQGRNTHKLVLPRGPNNPVGTVWIGLSKPTFGIHGTPEPSRIGKASSHGCVRLTNWDAEDLAGMVKPGALVRFVD
>NZ_CP042331.1|WP_149133138.1|5855486_5855921_+|CBS-domain-containing-protein
MQVSEVMTREVCVANPQETIQQAARLMAGLDVGVLPVGDDERLVGMITDRDIAIRGVAEGKAPLTKVSEVMSNEVRYCFADQEIAEVLQNMGDIQLRRLPVVDRDKRLVGILALSDAVAAVANGAAGEALAGISRPGGLHSQTG
>NZ_CP042331.1|WP_149133137.1|5854594_5855146_-|hypothetical-protein
MARTVTRSYENYADAETAVTRLEAAGLSSDDISIIGYHTAKVADDAAVGAEVGGTVGAGAGLLAGLAALPVPGVGPVLAAGWIFGTLAVGATAGATVGTLIGAMAGAGFSDDEAHFLAETIRRGGAVVSVRTSDSHAPAIEKIMDGAGPINAEMRRAEYQREGWTRFDEQAGPYAPPAWSELS
>NZ_CP042331.1|WP_149134065.1|5853901_5854576_+|phosphoribosyltransferase
MTLRSDIFSDRRDAGRKLANRLRRYRQRSGVIVLALPRGGVPVGFEVAQALKAPLDVLVVRKLGVPGDEEMAMGAIATAGARVLNRDVIAVLGIDPHIIDMVTAKEEQELLRRERLYRGDRAPLLLEGRTVIVVDDGLATGATMRAAVMALREKHPARIVVAVPVGSRETCEAMKAVADEAVCATMPRYFVGVGSWYSDFSQTSDDEVRSLLDKASGLPPRPGH
>NZ_CP042331.1|WP_149133136.1|5852453_5853644_-|NADH-quinone-oxidoreductase-subunit-D
MADAAARTFTVNFGPQHPAAHGVLRLVLELDGEVVERIDPHIGLLHRGTEKLIEHKTYLQALPYFDRLDYVAPMNQEHAFCLAAERLLGLPVPRRAQLIRVLYCEIGRLLSHLLNVTTQALDVGALTPPLWGFEEREKLMIFYERASGARMHANYFRIGGVHQDLPPALLDDIWAFCDPFLAHCDDLEELLTDNRIFKQRNVDIGVVKLDEAWAWGFSGVMVRGSGAPWDLRKAQPYECYEEMEFDIPVGSHGDCYDRYLIRMEEMRQAVRIIRQCIERLRSPDGAGPVAAQDFKVTPPRRQTMKRSMEAMIEQFKLYSEGHRVPAGEVYAAVEAPKGEFGVYLVSDGTNRPYRCKIRAPSFAHLQAIEAMARKHMLADVAAIIGSLDIVFGEIDR
>NZ_CP042331.1|WP_149133146.1|5864773_5865832_-|MBL-fold-metallo-hydrolase
MTRRKLLSFVGLGALLASTGAAWATISRSRNPYYQGPISDHFDGIVFSDGRSVNKGLLDVLRWQAGKREREAFPLQYAAPPQDKPPARVDGIRIVHLGHASFLYQVGGLNLLVDPVYSERASPFSFIGPRRVNEPGVAFDDLPKIDTVLITHNHYDHLDIETLARLHHRDQPRMIMPLGNDTIVKARIPDAHAEAHDWNDRLQLSEAVAITLLPSYHWSARGAFDRRMALWCSYVLETASTKIFHIGDTGYHDGSLYERLGSEHGPFHLAVLPIGAYEPRWFMSDNHMNPEEAVRVMLALRAEQAIGHHWGTFQLTDEGVERPLKALEAALAAAGLPEERFRPMRPGLSWSA
>NZ_CP042331.1|WP_149133147.1|5865871_5866474_-|methyltransferase-domain-containing-protein
MSSKDDQTLGFYAEEAGAYAGRDRQAEHRRIDIFAAGLAPGARILELGCGGGQDSEEMLRRGFDVVPTDGSPELAQQAAQRLGREVRVLLFENLDEVAAYDGVWAHACLLHAPRPALPGIIDRIHAALRPCGAFYASFKAGEAEGRDSLGRYFNYLSSAELRDAFGAPSRWQSLQIEEEMGSGYDRMATRWLHALAIKAS
>NZ_CP042331.1|WP_149133148.1|5866482_5867109_-|LysE-family-transporter
MTFEAWAAFAAATAVLLVIPGPTILLVISYALGQGWRTAFPIAVGVALGDFTAMTLSMLGVGALLATSAMVFTALKWIGAAYLVWLGIKLFRAGGSLDAKPREDAAPAWKMLGHAWLVTALNPKSITFFVAFLPQFLDTKGDFWTQMLIFETTFISLAFANAMGYALVASRARAVVSNPRAIGLFNKAGGTLLIGAGVATVAIRSGSN
>NZ_CP042331.1|WP_149133149.1|5867167_5867749_-|CAP-domain-containing-protein
MKRLSALALLVSAALLAACAGDPRREGPLDPRMVEKLNAVSLDPAQAGRILNTYRASNGLGPVRPDPRLMAMAQRQADAMVAANALSHDAGGNFTARIHAAGVDAARAAENLGGGYFSVEEAFDGWRKSPGHDANLRLKEVTRYGIALSKDPRTSYRAWWVLVVAAEPEVRREMAAEGAGPAVSFGNNPRPAR
>NZ_CP042331.1|WP_149133150.1|5867921_5868347_-|hypothetical-protein
MSSLFRTALSSAAGLVLFAAPALAQPCASNFKVDGVPMVTGLSYRTWDLVPNRQPAAVLKDLAAAVSAEGFADMRIDKPTSAVVAIQESTGSGRPQTLRITARKNGNGTRVDAVFVVQAGQVAPEDYVRKAFCRVIGGARS
>NZ_CP042331.1|WP_149133151.1|5868658_5870236_+|signal-recognition-particle-protein
MFGTLSERLSGILSGLTRRGALTEEDVNAALREVRRALLEADVALEVVRSFTDKVRERAIGAEVLKSVTPGQQVIKIVNDVLIETLGGEGEVISLDAVPPVPILMVGLQGSGKTTSTAKIAKRLTERNKKKVLMASLDTRRPAAMEQLAVLGQQVGVQTLPIVAGQSAVQIAKRAIEAGRLGGYDVVMLDTAGRVTLDDTLMEEVAQVKAATGPHEVLLVADALTGQDAVNTARAFDARVGLTGIVLTRMDGDSRGGAALSMRAVTGKPIKLVGTGEKTDELDDFHPSRVANRILGMGDIVSLVEKAVQTVDADKAQALAQRLAKGNFDLDDLRMQLQQMEKMGGFGGVMGLLPGMAQMKNQLAAAKVDDKMIARQVAIINSMTPAERRNPDLLKNSRKKRIAAGSGTSPEAINKLLKMHRGMADMMKAMKKQKGGMLGKLGGMFGLGGGLPAGMPDPSKMDPAQLEALQKQLGAGGGGLPPLPPGGFPGLPKGVTPPAGMMPKLPGLGGGGLPGLGGPFGGKKK
>NZ_CP042331.1|WP_149133152.1|5870416_5870785_+|30S-ribosomal-protein-S16
MSLKIRLTRGGAKKRPYYRIVVADARSPRDGRFIDKIGSYDPMKPKDAADRVVLDTEKVQSWLAKGAQPTDRVLRFLDAAGLAKRPARNNPNKAVPGEKAKERAEKKAEKAAAPAAEEAAAE
>NZ_CP042331.1|WP_149133153.1|5872266_5873016_+|tRNA-(guanosine(37)-N1)-methyltransferase-TrmD
MPFRASILTLYPEMFPGPLGISLAGEGLRKGLWSLDTHQIRDHGIGRHRNVDDNPAGGGAGMVLRCDVLAAAIDAAVPADDLRPRLLMSPRGRPLQQRQVREWAEGPGLVVVCGRFEGVDERVIEGRNLVEVSIGDYILSGGEMAALTLLDACVRLIPGVMGKVASGEDESFENGLLEYPHYTRPREWEGRGLPDALLSGDHARIAKWRREQAEKITRERRPDLLASPSPPAGEGAPKGRMRGRTADSD
>NZ_CP042331.1|WP_149133154.1|5873107_5873530_-|rhodanese-like-domain-containing-protein
MTRGAATRRTVLAGSLVLPASFVFGQSANTLSPREAFEAALAKRIVLIDIRSAEEWADTGLPQGAVPIDADAPAFEVRIAGLRLDNPGKRIVLIDRTGAQAVAVAQKLAGRGWRDLAAVRGGVLGPGGWLAEKLPVAEYP
>NZ_CP042331.1|WP_149133155.1|5873534_5874737_-|aminotransferase-class-I/II-fold-pyridoxal-phosphate-dependent-enzyme
MAFLADALKRVKPSATITITQKARDLKAQGKDVISLSVGEPDFDTPDNIKEAAIAAIRRGETKYTPVPGIPQLREAVARKFKRENGLDYKASQTIVSTGGKHVIYNALLATLNPGDEVVCVSPYWVSYPEMVALCGGTATFAETSLKNDFKLQPEDLEKAITPKTKWVILNSPSNPSGAAYSHAEMKKLTDVLMRHPHVWVLTDDMYEHLVYGDFQFVTPAQVEPALYERTLTMNGVSKSYAMTGWRIGYAAGPEHLIKAMDLVQGQQTSGTSAISQWAAVEALDGPQDHLPVFKKAFERRRDLVVSMLNQTRGLKCPTPEGAFYVYPDCSELIGKTMPNGQKIVTDEDLVMGLLEAEAVAAVHGSSFGLGPNFRISYATSDEKLEEACRRIQRFCAELR

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Crispr_ID: NZ_CP042331_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP042331_2

6067564-6067659

Orphan

Consensus_repeat	Method
GAGGCGGAGCAGAAATACGGCCACATCGAC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP042331_2

>merge|NZ_CP042331|2|6067564-6067659|CRISPRCasFinder
GAGGCGGAGCAGAAATACGGCCACATCGACCATTGGGAATGACGGTCGCGAGCGACAGCGCAGGCCGAGGCGGAGCAGAAGTACGGCCACATCGAC

>NZ_CP042331|2|2|6067564-6067659|CRISPRCasFinder
GAGGCGGAGCAGAAATACGGCCACATCGAC	CATTGGGAATGACGGTCGCGAGCGACAGCGCAGGCC
GAGGCGGAGCAGAAGTACGGCCACATCGAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP042331.1\|WP_149134085.1\|6077243_6077900_+\|methyltransferase-domain-containing-protein	unknown	unknown	gnl\|CDD\|225136
NZ_CP042331.1\|WP_149133319.1\|6067711_6068659_-\|50S-ribosomal-protein-L11-methyltransferase	unknown	unknown	gnl\|CDD\|225173
NZ_CP042331.1\|WP_149133326.1\|6075954_6077205_+\|DUF3419-family-protein	unknown	unknown	gnl\|CDD\|227670
NZ_CP042331.1\|WP_149133325.1\|6073387_6075037_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|183199
NZ_CP042331.1\|WP_149133320.1\|6068863_6069619_-\|SDR-family-NAD(P)-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|226476
NZ_CP042331.1\|WP_149133322.1\|6070274_6070571_-\|HicB-family-protein	unknown	unknown	gnl\|CDD\|374224
NZ_CP042331.1\|WP_149133311.1\|6057248_6058040_-\|DUF2189-domain-containing-protein	unknown	unknown	gnl\|CDD\|227760
NZ_CP042331.1\|WP_149133313.1\|6060553_6061528_-\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|378976
NZ_CP042331.1\|WP_149133316.1\|6063856_6064570_+\|AzlC-family-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224215
NZ_CP042331.1\|WP_149133317.1\|6064566_6064866_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226916
NZ_CP042331.1\|WP_149133314.1\|6061623_6062868_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|225371
NZ_CP042331.1\|WP_149134083.1\|6065037_6066873_-\|M24-family-metallopeptidase	unknown	unknown	gnl\|CDD\|238518
NZ_CP042331.1\|WP_149133318.1\|6067171_6067417_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP042331.1\|WP_149133321.1\|6069720_6070140_+\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224647
NZ_CP042331.1\|WP_149133324.1\|6070893_6073296_-\|UvrD-helicase-domain-containing-protein	unknown	unknown	gnl\|CDD\|236976
NZ_CP042331.1\|WP_149133310.1\|6055000_6057022_+\|DEAD/DEAH-box-helicase	unknown	unknown	gnl\|CDD\|223587
NZ_CP042331.1\|WP_149133312.1\|6058267_6060433_+\|NAD-dependent-DNA-ligase-LigA	unknown	unknown	gnl\|CDD\|236137
NZ_CP042331.1\|WP_149133315.1\|6062767_6063826_+\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|225117
NZ_CP042331.1\|WP_149133323.1\|6070583_6070778_-\|addiction-module-toxin,-HicA-family	unknown	unknown	gnl\|CDD\|377942
NZ_CP042331.1\|WP_149134084.1\|6075203_6075629_-\|peptide-methionine-(R)-S-oxide-reductase-MsrB	unknown	unknown	gnl\|CDD\|376583

Protein	Function_ID	Function_description	E-value
NZ_CP042331.1\|WP_149134085.1\|6077243_6077900_+\|methyltransferase-domain-containing-protein	gnl\|CDD\|225136	COG2226, UbiE, Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism].	9.49827e-21
NZ_CP042331.1\|WP_149133319.1\|6067711_6068659_-\|50S-ribosomal-protein-L11-methyltransferase	gnl\|CDD\|225173	COG2264, PrmA, Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis].	1.01992e-64
NZ_CP042331.1\|WP_149133326.1\|6075954_6077205_+\|DUF3419-family-protein	gnl\|CDD\|227670	COG5379, BtaA, S-adenosylmethionine:diacylglycerol 3-amino-3-carboxypropyl transferase [Lipid metabolism].	5.70568e-146
NZ_CP042331.1\|WP_149133325.1\|6073387_6075037_+\|hypothetical-protein	gnl\|CDD\|183199	PRK11561, PRK11561, isovaleryl CoA dehydrogenase; Provisional.	1.34262e-156
NZ_CP042331.1\|WP_149133320.1\|6068863_6069619_-\|SDR-family-NAD(P)-dependent-oxidoreductase	gnl\|CDD\|226476	COG3967, DltE, Short-chain dehydrogenase involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein) [Cell envelope biogenesis, outer membrane].	7.32562e-105
NZ_CP042331.1\|WP_149133322.1\|6070274_6070571_-\|HicB-family-protein	gnl\|CDD\|374224	pfam15919, HicB_lk_antitox, HicB_like antitoxin of bacterial toxin-antitoxin system. This is a family of HicB-like antitoxins.	5.22799e-23
NZ_CP042331.1\|WP_149133311.1\|6057248_6058040_-\|DUF2189-domain-containing-protein	gnl\|CDD\|227760	COG5473, COG5473, Predicted integral membrane protein [Function unknown].	2.66997e-76
NZ_CP042331.1\|WP_149133313.1\|6060553_6061528_-\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|378976	pfam12852, Cupin_6, Cupin. This is a family of bacterial and eukaryotic proteins that belong to the Cupin superfamily. Some of the proteins in this family are annotated as being members of the AraC family of transcription factors, in which case this domain corresponds to the ligand binding domain.	5.10444e-46
NZ_CP042331.1\|WP_149133316.1\|6063856_6064570_+\|AzlC-family-ABC-transporter-permease	gnl\|CDD\|224215	COG1296, AzlC, Predicted branched-chain amino acid permease (azaleucine resistance) [Amino acid transport and metabolism].	4.91869e-60
NZ_CP042331.1\|WP_149133317.1\|6064566_6064866_+\|hypothetical-protein	gnl\|CDD\|226916	COG4541, COG4541, Predicted membrane protein [Function unknown].	5.17512e-12
NZ_CP042331.1\|WP_149133314.1\|6061623_6062868_+\|MFS-transporter	gnl\|CDD\|225371	COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism].	3.41617e-80
NZ_CP042331.1\|WP_149134083.1\|6065037_6066873_-\|M24-family-metallopeptidase	gnl\|CDD\|238518	cd01085, APP, X-Prolyl Aminopeptidase 2. E.C. 3.4.11.9. Also known as X-Pro aminopeptidase, proline aminopeptidase, aminopeptidase P, and aminoacylproline aminopeptidase. Catalyses release of any N-terminal amino acid, including proline, that is linked with proline, even from a dipeptide or tripeptide.	4.48202e-120
NZ_CP042331.1\|WP_149133321.1\|6069720_6070140_+\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|224647	COG1733, COG1733, Predicted transcriptional regulators [Transcription].	1.64024e-34
NZ_CP042331.1\|WP_149133324.1\|6070893_6073296_-\|UvrD-helicase-domain-containing-protein	gnl\|CDD\|236976	PRK11773, uvrD, DNA-dependent helicase II; Provisional.	0
NZ_CP042331.1\|WP_149133310.1\|6055000_6057022_+\|DEAD/DEAH-box-helicase	gnl\|CDD\|223587	COG0513, SrmB, Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis].	2.45233e-117
NZ_CP042331.1\|WP_149133312.1\|6058267_6060433_+\|NAD-dependent-DNA-ligase-LigA	gnl\|CDD\|236137	PRK07956, ligA, NAD-dependent DNA ligase LigA; Validated.	0
NZ_CP042331.1\|WP_149133315.1\|6062767_6063826_+\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|225117	COG2207, AraC, AraC-type DNA-binding domain-containing proteins [Transcription].	2.89052e-22
NZ_CP042331.1\|WP_149133323.1\|6070583_6070778_-\|addiction-module-toxin,-HicA-family	gnl\|CDD\|377942	pfam07927, HicA_toxin, HicA toxin of bacterial toxin-antitoxin,. HicA_toxin is a bacterial family of toxins that act as mRNA interferases. The antitoxin that neutralizes this is family HicB, pfam15919.	4.17576e-15
NZ_CP042331.1\|WP_149134084.1\|6075203_6075629_-\|peptide-methionine-(R)-S-oxide-reductase-MsrB	gnl\|CDD\|376583	pfam01641, SelR, SelR domain. Methionine sulfoxide reduction is an important process, by which cells regulate biological processes and cope with oxidative stress. MsrA, a protein involved in the reduction of methionine sulfoxides in proteins, has been known for four decades and has been extensively characterized with respect to structure and function. However, recent studies revealed that MsrA is only specific for methionine-S-sulfoxides. Because oxidized methionines occur in a mixture of R and S isomers in vivo, it was unclear how stereo-specific MsrA could be responsible for the reduction of all protein methionine sulfoxides. It appears that a second methionine sulfoxide reductase, SelR, evolved that is specific for methionine-R-sulfoxides, the activity that is different but complementary to that of MsrA. Thus, these proteins, working together, could reduce both stereoisomers of methionine sulfoxide. This domain is found both in SelR proteins and fused with the peptide methionine sulfoxide reductase enzymatic domain pfam01625. The domain has two conserved cysteine and histidines. The domain binds both selenium and zinc. The final cysteine is found to be replaced by the rare amino acid selenocysteine in some members of the family. This family has methionine-R-sulfoxide reductase activity.	4.0869e-77

>NZ_CP042331.1|WP_149133318.1|6067171_6067417_+|hypothetical-protein
MTYVLNNADVLPLAVVAEVKARKADKPSLMQRLYAALIESRKRSAARELRARNLLVNEAEIVLGGYPSATLSNDVSLPFNR
>NZ_CP042331.1|WP_149134083.1|6065037_6066873_-|M24-family-metallopeptidase
MTESTLPTCRFQSFSEPSDPRLVAGRVSALRMALAAQGLDGFIIPRADEHQGEYVPAHMARLAWLTGFTGSAGNAIVLADKAALIVDGRYTIQSAAQTDTAVVTPVRMEETPLERWIEQNLPAGGKLGYDPWLHTVDGVAKLEKAAAAAGGSLVALAANPIDTLWADRPAAPSAPVKPHPADYAGEDSASKLDRIRKALAEAKVDALVVSDPHALAWVFNIRGGDVEHTPLPLGYAVVPREGRPTVFLAPEKITNEAGDAIGAVGEIAAPAALEEQLRKLGAAKAKVRLDATTAASALATLIAQAGGTPDAGSDPIALMKARKNAAELKGTRTAHLRDGAAMTNYLSWLAREAPKGNLTEIDAVAALEAERLRTGLLKDVSFTTIAGAGPNAALPHYRVSEATNRRLEPGIFLVDSGGQYEDGTTDITRTIVIGEPTAEMRDRYTRVLQGHVAISRLVFVKGTSGAQLDAFARLPLWQGGFDFDHGTGHGVGSYLSVHEGPQRLSKLGTTPLEPGMILSNEPGYYKQGEYGIRIENLIVVEERLIPGAERTIYGFETITWCPYERALIDTALLDAGEIAWIDAYHAKVWEKLSPLVEGEAKSWLEKACRPL
>NZ_CP042331.1|WP_149133317.1|6064566_6064866_+|hypothetical-protein
MSVDPINLLAFLGMAIVTYATRVAGLALAGRLNLSPRAQAAFDAIPPAVLVAVIAPSALATGWAETAAAAIAALAATRLPLLGVVAVGVVAVVAFRMVM
>NZ_CP042331.1|WP_149133316.1|6063856_6064570_+|AzlC-family-ABC-transporter-permease
MSSLRDDIRRGLNDIWPAAVAAAPIGLLFGAVAASKGLSPLEVFLMSAMVFAGGAQFAAVELWATPAPVAAIVFSTLLINARHVLMGASLAPKLEGFSRWQKFPGLYYMADENWALAEKRARTHRLTPAYWFAMVIPFVTGWLVNSTLGATIGAVLGDPKRLGADFAFTALFIALVAAFWKGRVTFWTVAAAGIASAVTYRLAGPPWHVAAGAICGLLAAWLAAGAEEQSATKEAQA
>NZ_CP042331.1|WP_149133315.1|6062767_6063826_+|helix-turn-helix-domain-containing-protein
MPLSRRWSAASACCCSARRAPSGSARVALPTPSEARDSDETDRARDAPDHFSSRQGQCDRLYPAGMDLISQGEALAQTPLLPGEHARIFTAARFDGLEFLSARFSTHAYAPHVHETFAIGTIEAGCEVWHARGRRMYASAGDVVFNHPFDVHDGLPYDGGYRYRMSYPTIELMREIAASLAGREDVGTPFFHEPMVHDPEGAAIFAAAHRLLDDGRDMLAGEEGLLRAYAYCVAKHADLSVREIGREQGPVAFAKTMLEARYDEDLSLAEIARGCGLPRHHLIRAFRRETGLTPHAYLVDIRVRRARERLRRGEAPGAVAAATGFCDQAHLTRAFKARLGVTPGAFRAAHTG
>NZ_CP042331.1|WP_149133314.1|6061623_6062868_+|MFS-transporter
MSDSLSATALEFDDTAEEAREKPAWAAVVSLTFGVFGLVTAEFLPASLLTPMAADVGVSVGAAGQAVTATAVVGAIAGLAAAIVTRGIDRRIVIWSLTGLLILSSALAAVATNLTTLLFARVLLGIGLGAFWSMVAATAMRLVPPSAMPKAMSLIFTGVSVATVSAAPIGAYVGNLMGWRVVFWLSALIGVATLVIQMAVLPRLPARGSPDIRTLFRLLGRPSIALVLAGIVVVISGHFAGFTYVRPFLEQIPQLSVEAISLVLLAYGVGGFFGNFLGGAITARSAKASVIFGAFAIALMGGSLLLVGASPIASAVAVGLWGFAFGALPVGFQTWLVRVAPEEEAESAGGLLVAAFQVAIASGAIFGGLLVDGFGTLGVIAYATVATLVGGLGVLLLGAKSPERVGAGGAAHAV
>NZ_CP042331.1|WP_149133313.1|6060553_6061528_-|helix-turn-helix-domain-containing-protein
MTASADHLTEMLRGLRLDGVDYSRCQMAAPWGVAFPQSREACFHFISRGGCWLKTPAGEWLGLSDGDAVLLPRGGGHVLASSPEVVASPPCNCRVREAYGNVFDVEGGGTGEHMLLFTGRMTFNVDLDHPLLRLMPDVMQIYDFTANEPGLPHLLEAMGREVAMDRVGAGGILARLADVVAATIIRSWVEFGCGTAKGWVAAARCPTIGRVLAAIHAHPETDWTVESLAELMGASRSGFAERFAEVVGETPARYVAQVRMHQARQWLARDKLRIAVVAQRLGYESEASFSRAFKRITGLAPSQVRAAGEAPPAAMFTPSVAAAE
>NZ_CP042331.1|WP_149133312.1|6058267_6060433_+|NAD-dependent-DNA-ligase-LigA
MSDAKDTALSETSIAELTPRKAKAEHKQLAAQVQAANDAYFQEDQPIMDDAAYDAKRRRLVALEEAFPELKETGGVSGKVGAKPSGKFAKIRHRVPMLSLDNAFSDEAVAEFVGRVYRFLGRKEEDGIDFTAEPKIDGLSLSLRYEKGELVAAATRGDGEEGEDVTVNARTISEIPATLAGPDVPEIAEVRGEVYLGHADFAGINERQREKGLTEFANPRNAAAGSLRQLDVGVTASRPLRFFAYAWGEMPVLPAPTQMGVVETFRRWGFRTNPLMRRCGSVEELIAQYRLIESQRATLGYDIDGVVYKVDDLALQARLGFVSRAPRWAIAHKFPAELATTVLEAIDIQVGRTGALSPVARLKPVTVGGVVVTNATLHNEDYIRGFDSKGLPIRDGTDIRIGDTVTVKRAGDVIPRVEAVDLSKRPADSKPYEFPTLCPACGSHATRELNPRTGKEDAVRRCTGGLICPAQSVERLKHFVSRDAMDIDGLGDKQIEFFHSDPELPVKEPADIFTLAQRDAANLKKLKDKEGFGAVSAKKLFDAIEDRRRPPLNRFIFGLGIRHIGETTARLLARHYGSFEALRAAGIAAADETSPERQELDAIDSVGPTVVEALIEFFGEPHNEQLLDRLLVEVAPQPLEAVASASPVAGKIVVFTGALERMTRDEAKAMAERLGAKVAGSVSSKTDLLVAGPGAGSKLKDAAKHGVEVIDEAGWFDLVGG
>NZ_CP042331.1|WP_149133311.1|6057248_6058040_-|DUF2189-domain-containing-protein
MANVDGTVHDIVTLSQPRIKTITTMDLREALQRGWEDFMAQPSHLVFIAVIYPIAGILLAQLTVSYNIFPLLFPLLSGFALIGPFAAIGLYEVSRRREKGLDSSWSHALEVLRSPSIRQILLLGGMLTGLFLAWLFSAWLLYRGILGLPADVSTADFLRAVFTTADGWIMIVIGNSLGLLFAIVAFSISVVSFPLIIDRHVDAPTAIRTSIAAVEANPRMMMYWGLIVTGLLVLGCLPVLVGLVVVMPVLGHATWHLYRKLVG
>NZ_CP042331.1|WP_149133310.1|6055000_6057022_+|DEAD/DEAH-box-helicase
MSFSLTSPPLARALADRNYSEPTPVQSAVLEDAALGRDLLVSSQTGSGKTIAYGLAIGETLLGGAERLGAAAEPLALIIAPTRELALQVQRELAWLYAQTGARVISCVGGMDPRREAMLLDEGAHIVVGTPGRLRDHIERRRLDVSALKAVVLDEADEMLDLGFRDDLEYILKTTPEGRRSLLFSATFPKAIVQLAQSYQRDALRIEVEAARRGHADIAYKAVRVYPKEAELAVVNLLRFHDAPVALVFCNTRNAVRHLEAILLERGFTSVALSGELGQNERNAALQALRDGRARVCVATDVAARGIDLPGLDLVIHAELPNDSEVMQHRSGRTGRAGNKGTSVLLVPQSRRRKAERLLMEGRVEAEWIGPPTAEEIRALDQERLLADPMLSGEVGDDDVGMIEALMAGREAREIAAALVRLYRARLPAAEEAGDPGYGRDERKPARTTEDYAAKRRPFGAGREGGEDDERPRKPAGPRGDTVWFRLDIGRKQGADPRQLLPMLCRRGRITRDEVGAIRIFDRETKVEIDADVADRFYESARVPDRDRITIEPTTEAERRPAKSFSDKAERPAAPRAFRDRPETGEDRPQRKRFPPKDGEHREPRGEDRKPYHAEGRPQRDDARPRRDDGKPGGGFKKPFASKGKPFAGKPERQDGGRPAGGKPFGKGKPRRG
>NZ_CP042331.1|WP_149133319.1|6067711_6068659_-|50S-ribosomal-protein-L11-methyltransferase
MREGLLPATVATVFELSTSGEKARALTELLGEIFDPTETAISAFEIEEGVTTLSLNAPWKVEIYFAQHPDEEAVRDLLRPIVGDLVDATPFTTVNTRDWVATSLDGLKPVRAGRVIVHGAHDRDVVRVNDVAIEIEAALAFGTGHHGTTSGCLLALDAELKKRRPRHGLDVGTGTGILALALAKQIKRKVVAGDIDAIAVEVSAHNARLNHAPNALDLYVAPGLRHAKANRPGHFDLVFANILAGPLRQLAPAIARVLSRDGTLILSGLLAMDVAGVVSAYRHHGIYLVSQSLREGWATLVMKKGGAAPRPRHLC
>NZ_CP042331.1|WP_149133320.1|6068863_6069619_-|SDR-family-NAD(P)-dependent-oxidoreductase
MNISGNTILITGGGSGIGRALAEALHTKGNQVIIAGRRENVLDEVTAANPGMASMLLDIQDKADIEAFARQVVERFPKLNAVLNNAGIMKPEDVPAADNLAIAEETITTNLLGPIRLTTALLPHLLKQPGATVLTVSSGLAFVPLAATPTYSATKAAIHSWSISLREQLKGTSVEVIEIAPPYVQTELLGPQQAVDPAAMPLADFIAEVMTILETGPDAAEVIVERCKPLRYAEAAGTFGQVFAALNAQHA
>NZ_CP042331.1|WP_149133321.1|6069720_6070140_+|helix-turn-helix-transcriptional-regulator
MQAIRTAMAAMHARSDAIPPVSPAVESLVRQVIAQVADKWTMLVLEALEEHGTLRFTEVGRMVGGISQKMLTKTLREMERDGLVIRTVHPVIPPHVDYTLTELGRELSAAFCGVWVWAETYYGEVSAARKAFREREGGA
>NZ_CP042331.1|WP_149133322.1|6070274_6070571_-|HicB-family-protein
MRHYIAVVHKDETSCYGVFFPDVKGVFTAGDTLEEAFSQARDALEFAAESWIEDTASDFPEPRSIDELRTDPDFVDASKDAILMAIPFGRTPARIAAE
>NZ_CP042331.1|WP_149133323.1|6070583_6070778_-|addiction-module-toxin,-HicA-family
MLTNSADIIRRLKREGFVLKSVRGSHQKYVHEATKRMVIVPHPKRDIPIGTVYAIYKDAGWERD
>NZ_CP042331.1|WP_149133324.1|6070893_6073296_-|UvrD-helicase-domain-containing-protein
MTHEHTGPLSETDPFSAPLPRPGGLAARAAAQPTAGYLTGLNPEQRQAVEATEGPVLVLAGAGTGKTRVLTTRIGHLIATNRAYPSQILAVTFTNKAAREMKERVAHLVGPVAEGMPWLGTFHSISAKLLRRHAELLDLRSDFTILDTDDQIRLMKQVIQAENIDEKRWPGRMLAGFIDSWKNRGLSPKDVPPGEAAVFANGKGGKLYAAYQERLKALNAVDFGDLLLHCLTLFRDYPDVLTSYHDRFRYILVDEYQDTNTAQYLWLRLLAQGRRNICCVGDDDQSIYGWRGAEVDNILRFEHDFPGATVIRLERNYRSTGHILATASKLIARNEGRLGKTLRTEDALGEKVTITGAWDSQEEARLISDEIEAMQAKKYNLAEVAVLVRISAQMREIEERFVQAGVPYRVIGGPRFYERAEIRDALAYLRCVVSPTDDLAFERIVNVPKRGLGDATVQLLHNHARATGFSLMQSARAAVESDELKPKARTALRELVEAFGRWSARAEHMPQGELAELVLEESGYTEMWKKDRSADAAGRLENLKELVRSLDEFPDLPAFLEHVSLVMDVADGEAEARVSIMTLHAAKGLEFDTVFLPGWEEGLFPNQRALDENGRAGLEEERRLAHVGLTRARKKLKLYFASNRRIHGLWQTSLPSRFIDELPEEHVEVEQAPTSYSQGGYGASRFDRMESFGSSYNTPGWQRAQENRARNGGGSGFSESGRGFGSGGFGGSSRQRGPLLIEGELTAKSTGESAYGTGARVFHVKFGPGSVASVDGNKLTVDFDKAGRKMVLDSFVQKAG
>NZ_CP042331.1|WP_149133325.1|6073387_6075037_+|hypothetical-protein
MAKQSGDERWEITNQVPVLADYDAFAADPVLPGIVSTSGADWARERLHEAGRTVGSARVQELAYLANRYTPELRAFDRFGNRIDEIAFHPAWHELMSLAIGQETHALAWNRREPGAQVARAALQYLWYGAESGICCPISMTYAAVPVLKQDATLWGQWGSLVTSNRYDPRQGPAHLKTGATVGTAMTETQGGSDLRQTQTYAENNRDGTWSLHGRKWFFSVPHSDVFLTLARTQEGISCFAVPGWLPDGSRNGIAIQRLKEKVGNRSNASSEVEFRGAIGHLIGEPGRGIRTGLSMNHNSRLDIAAASSGLMRMAVSLAAHHAQHRRAFQKALIDQPIMQNVLADIAIEAEAAAWLAFRLFAALDRQEDSQSERLLARVGAPIAKYWITRRAPAVVTEALECLGGNGFIEENPMARLYREAPLNAIWEGSGNVICLDVLRSLAREEGAVDVLRAELLAAAGADKRYDAALKRLEGELPEMIRNEGQARRLTERLALLLQASLLLRFASTAVADAFVATRLAGGWSGQFGDLPPAVDAAALARRVVPVVS
>NZ_CP042331.1|WP_149134084.1|6075203_6075629_-|peptide-methionine-(R)-S-oxide-reductase-MsrB
MFGEPKKQDETFPFQLTDAQWRERLTPEQYQILRGHGTERAGSCALNYEKRAGTFSCAGCGQKLFRSGKKFESGTGWPSFDQPLEGAVGASEDFSYGMHRVEVHCANCGGHLGHVFPDGPPPTGLRYCINGVAMNFEPEAA
>NZ_CP042331.1|WP_149133326.1|6075954_6077205_+|DUF3419-family-protein
MQTARAARRMTSSGLGLAVRRSKTLSKAGMLEWLFARAFSGLVYPQIWEDPVVDMAALQLKADDHVVAIASGSCNILSYLTAAPIRVSAVDLNGAHIALGRLKLAALAKMEKQEDFLRFFGRANARDNVGVYDREIAPHLDAVSRGYWEGRGLNGRRRINLFAKGFYRYGLLGRFIGTGHVLARALGGNPRAMLAARALAEQRALYEQHLAPVFERKLVRWLVRQPASLYGLGIPPAQYKALAADGEDGILGALKLRLERLACDFDLKDNYFAQQAFGRRYGEGADAAFPPYLQPQHFAAVKERAPGVSYRQSAVTAFLEDQPAESCDAYVLLDAQDWMNDADLTALWSQITRTARPGARVIFRTAADERLLPGRIPAAILDQWHYEEERSRDLCRQDRAAIYGGFHLYVLKGQAR
>NZ_CP042331.1|WP_149134085.1|6077243_6077900_+|methyltransferase-domain-containing-protein
MDRIYRHQRHIYDASRKFYLLGRDQLIDGLQPPPGATVLEIGCGTGRNLIRIARRYPSCVCYGLDVSSEMLATARASVAKAGLEDRIRLAQADATDFYPQALFGLQGFDRIVISYALSMIPPWQGVVAEALRRLNLGGSLHIVDFGDQSGLPAAFKVVLLRWLALFHVMPRENLPGTVKALAEAAGAECRLGAPYRGYAVHAVVRRRGEERAQGTPLL

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Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NZ_CP042331_1	1.2\|5863989\|15\|NZ_CP042331\|CRISPRCasFinder	5863989-5864003	15	NZ_CP042331.1	2312977-2312991	0	1.0

1. spacer 1.2|5863989|15|NZ_CP042331|CRISPRCasFinder matches to position: 2312977-2312991, mismatch: 0, identity: 1.0

acgatgccgatcgag	CRISPR spacer
acgatgccgatcgag	Protospacer
***************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

335809 : 346977

uncultured_Mediterranean_phage(77.78%)

tRNA

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_149128723.1\|335809_336820_+	beta-N-acetylhexosaminidase	A0A1B1IVS3	uncultured_Mediterranean_phage	5.2e-23	39.7
WP_149128724.1\|336867_337698_+	segregation/condensation protein A	A0A1B1IVW1	uncultured_Mediterranean_phage	2.8e-30	33.5
WP_149128725.1\|337694_338393_+	SMC-Scp complex subunit ScpB	A0A1B1IVT7	uncultured_Mediterranean_phage	1.0e-38	47.6
WP_149133598.1\|338632_339673_+	ATP-binding cassette domain-containing protein	F2Y2R6	Organic_Lake_phycodnavirus	6.6e-13	28.0
WP_149128726.1\|339754_340000_+	twin-arginine translocase TatA/TatE family subunit	A0A1B1IVR9	uncultured_Mediterranean_phage	2.6e-08	57.7
WP_149128727.1\|340098_340800_+	twin-arginine translocase subunit TatB	NA	NA	NA	NA
WP_149128728.1\|340796_341600_+	twin-arginine translocase subunit TatC	A0A1B1IVR7	uncultured_Mediterranean_phage	1.3e-53	48.0
WP_149128729.1\|341729_342014_+	GIY-YIG nuclease family protein	NA	NA	NA	NA
WP_149128730.1\|342218_343517_+\|tRNA	serine--tRNA ligase	A0A1B1IVT2	uncultured_Mediterranean_phage	2.6e-91	47.5
WP_149128731.1\|343709_344471_+	5'/3'-nucleotidase SurE	A0A1B1ITZ2	uncultured_Mediterranean_phage	2.9e-34	38.3
WP_149128732.1\|344490_345153_+	methyltransferase domain-containing protein	NA	NA	NA	NA
WP_149133599.1\|345720_346977_+	peptidoglycan DD-metalloendopeptidase family protein	I2E8W3	Clostridium_phage	1.7e-15	45.5

DBSCAN-SWA_2

2218111 : 2294976

Paramecium_bursaria_Chlorella_virus(22.22%)

integrase,holin,tRNA,transposase

attL 2212877:2212896|attR 2267871:2267890

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
2212877:2212896	attL	NA	NA	NA	NA
WP_149130209.1\|2218111_2219809_-\|holin	choline dehydrogenase	A0A1V0S9M4	Catovirus	2.2e-58	31.7
WP_149130210.1\|2219902_2221525_-	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_149130211.1\|2221602_2223312_-	NAD(P)-binding protein	A0A1V0SI18	Klosneuvirus	4.5e-35	23.7
WP_149130212.1\|2223343_2223922_-	hypothetical protein	NA	NA	NA	NA
WP_149130213.1\|2224115_2225375_-	FAD-dependent oxidoreductase	NA	NA	NA	NA
WP_149130214.1\|2225503_2226442_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_149130215.1\|2226483_2227494_-	metallophosphoesterase	A0A2C9CX42	Yersinia_phage	4.9e-21	28.8
WP_149130216.1\|2227312_2228434_-	HAD-IA family hydrolase	NA	NA	NA	NA
WP_149130217.1\|2230410_2230644_+	hypothetical protein	NA	NA	NA	NA
WP_149130218.1\|2230845_2231544_+	hypothetical protein	NA	NA	NA	NA
WP_149130219.1\|2231540_2232113_+	hypothetical protein	NA	NA	NA	NA
WP_149130220.1\|2232109_2234245_+\|integrase,transposase	DDE-type integrase/transposase/recombinase	NA	NA	NA	NA
WP_149130221.1\|2234265_2235327_+	AAA family ATPase	NA	NA	NA	NA
WP_149130222.1\|2235328_2237233_+	TniQ family protein	NA	NA	NA	NA
WP_149130223.1\|2237218_2237437_-	hypothetical protein	NA	NA	NA	NA
WP_149130224.1\|2237449_2237641_-	hypothetical protein	NA	NA	NA	NA
WP_149130225.1\|2237787_2239590_-	hypothetical protein	NA	NA	NA	NA
WP_149130226.1\|2239925_2243429_-	DEAD/DEAH box helicase	M1H1D9	Paramecium_bursaria_Chlorella_virus	2.6e-13	24.9
WP_149130227.1\|2243415_2244198_-	DUF1837 domain-containing protein	NA	NA	NA	NA
WP_149130228.1\|2244344_2245496_-	DUF2235 domain-containing protein	NA	NA	NA	NA
WP_149130229.1\|2245492_2246779_-	hypothetical protein	NA	NA	NA	NA
WP_149130230.1\|2246775_2248509_-	hypothetical protein	NA	NA	NA	NA
WP_149130231.1\|2248909_2250406_+	hypothetical protein	NA	NA	NA	NA
WP_149130232.1\|2250706_2251786_+	DUF1837 domain-containing protein	NA	NA	NA	NA
WP_149130233.1\|2251782_2254401_+	DEAD/DEAH box helicase	NA	NA	NA	NA
WP_149130234.1\|2254972_2255974_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_149133771.1\|2256172_2256505_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_149130235.1\|2256739_2258170_+	DUF1254 domain-containing protein	M1HNU9	Paramecium_bursaria_Chlorella_virus	3.3e-47	34.6
WP_149130236.1\|2258230_2258587_+	hypothetical protein	NA	NA	NA	NA
WP_149130237.1\|2259133_2260468_+	C4-dicarboxylate ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_149130238.1\|2260641_2260857_-	hypothetical protein	NA	NA	NA	NA
WP_149130239.1\|2261249_2261729_+	VOC family protein	NA	NA	NA	NA
WP_149130240.1\|2261791_2262787_-\|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	NA	NA	NA	NA
WP_149130241.1\|2263532_2264717_+	winged helix-turn-helix transcriptional regulator	D7RWK9	Brochothrix_phage	1.1e-32	27.2
WP_149130242.1\|2265097_2266300_-	mandelate racemase/muconate lactonizing enzyme family protein	Q6A202	Oenococcus_phage	8.7e-49	32.1
WP_149130243.1\|2266305_2267526_-	mandelate racemase/muconate lactonizing enzyme family protein	Q6A202	Oenococcus_phage	4.1e-54	35.0
WP_149130244.1\|2267546_2269274_-	dipeptide ABC transporter ATP-binding protein	Q6GZ03	Mycoplasma_phage	1.8e-07	30.7
2267871:2267890	attR	NA	NA	NA	NA
WP_149130245.1\|2269270_2270398_-	ABC transporter permease subunit	NA	NA	NA	NA
WP_149130246.1\|2270401_2271388_-	ABC transporter permease subunit	NA	NA	NA	NA
WP_149130247.1\|2271451_2273410_-	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_149130248.1\|2273496_2274438_-	aldose 1-epimerase	NA	NA	NA	NA
WP_149130249.1\|2274671_2276399_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_149133772.1\|2276479_2277301_+	NAD-dependent epimerase/dehydratase family protein	NA	NA	NA	NA
WP_149130250.1\|2277357_2278614_+	glucarate dehydratase	NA	NA	NA	NA
WP_149130251.1\|2278637_2279528_-	SMP-30/gluconolactonase/LRE family protein	NA	NA	NA	NA
WP_149130252.1\|2279751_2280630_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_149133773.1\|2280704_2281778_+	four-carbon acid sugar kinase family protein	NA	NA	NA	NA
WP_149130253.1\|2281774_2282785_+	4-hydroxythreonine-4-phosphate dehydrogenase PdxA	NA	NA	NA	NA
WP_149130254.1\|2282784_2283840_+	cupin domain-containing protein	NA	NA	NA	NA
WP_149128711.1\|2284222_2285239_-\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_149130255.1\|2285419_2286865_+\|transposase	IS1182 family transposase	NA	NA	NA	NA
WP_149128711.1\|2287059_2288076_+\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_149133774.1\|2288460_2288706_-	hypothetical protein	NA	NA	NA	NA
WP_149133775.1\|2288639_2289158_+	hypothetical protein	NA	NA	NA	NA
WP_149130256.1\|2289200_2290643_-	oligosaccharide flippase family protein	NA	NA	NA	NA
WP_149130257.1\|2290840_2291884_+	hypothetical protein	NA	NA	NA	NA
WP_149130258.1\|2293057_2293426_+	hypothetical protein	NA	NA	NA	NA
WP_149130259.1\|2293818_2294976_-\|transposase	IS110 family transposase	NA	NA	NA	NA

DBSCAN-SWA_3

2342471 : 2381841

Rhodobacter_phage(18.18%)

protease,transposase,tail,head

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_149129006.1\|2342471_2343226_-\|transposase	IS5 family transposase	A0A0N9SHJ4	Paenibacillus_phage	4.8e-13	33.9
WP_149130297.1\|2343285_2344170_-	DUF1003 domain-containing protein	NA	NA	NA	NA
WP_149130298.1\|2344768_2345755_-	sugar kinase	NA	NA	NA	NA
WP_149130299.1\|2345669_2346119_-	lactoylglutathione lyase	NA	NA	NA	NA
WP_149130300.1\|2346211_2347657_+	cation diffusion facilitator family transporter	NA	NA	NA	NA
WP_149130301.1\|2347779_2350425_+	aminopeptidase N	A0A0P0IY26	Acinetobacter_phage	5.4e-19	22.8
WP_149130302.1\|2350777_2353075_+	PAS domain-containing protein	A0A1V0SGX0	Hokovirus	9.1e-31	36.3
WP_149130303.1\|2353619_2354348_-	methyltransferase domain-containing protein	NA	NA	NA	NA
WP_149130304.1\|2354687_2355443_-	cyclic nucleotide-binding domain-containing protein	NA	NA	NA	NA
WP_149130305.1\|2355679_2355988_-	hypothetical protein	NA	NA	NA	NA
WP_149130306.1\|2356113_2357565_-	porin	NA	NA	NA	NA
WP_149130307.1\|2358083_2361041_-	bifunctional [glutamine synthetase] adenylyltransferase/[glutamine synthetase]-adenylyl-L-tyrosine phosphorylase	NA	NA	NA	NA
WP_149133780.1\|2361054_2362551_-	HAMP domain-containing protein	NA	NA	NA	NA
WP_149130308.1\|2362642_2363326_-	response regulator	W8CYM9	Bacillus_phage	8.2e-28	33.3
WP_149133781.1\|2363548_2364610_-	PDZ domain-containing protein	A0A1B1IT49	uncultured_Mediterranean_phage	1.7e-19	27.5
WP_149130309.1\|2364906_2365428_+	hypothetical protein	NA	NA	NA	NA
WP_149130310.1\|2365417_2365894_-	cytochrome c-type biogenesis protein CcmH	NA	NA	NA	NA
WP_149130311.1\|2365898_2367878_-	heme lyase CcmF/NrfE family subunit	NA	NA	NA	NA
WP_149133782.1\|2367885_2368356_-	cytochrome c maturation protein CcmE	NA	NA	NA	NA
WP_149130312.1\|2368397_2369501_-	c-type cytochrome biogenesis protein CcmI	NA	NA	NA	NA
WP_149130313.1\|2369671_2371045_-	sensor histidine kinase	NA	NA	NA	NA
WP_149130314.1\|2371054_2371723_-	response regulator	NA	NA	NA	NA
WP_149130315.1\|2371762_2372086_-	hypothetical protein	NA	NA	NA	NA
WP_149130316.1\|2372149_2376067_-	hypothetical protein	A0A0K1LLC1	Rhodobacter_phage	1.1e-209	37.9
WP_149130317.1\|2376066_2376498_-	peptidase P60	F4YXU4	Roseobacter_phage	2.8e-34	48.6
WP_149130318.1\|2376494_2377376_-	DUF2163 domain-containing protein	A0A0B5A5B8	Paracoccus_phage	1.9e-53	38.6
WP_149130319.1\|2377385_2378027_-	TIGR02217 family protein	A0A0B5A2K3	Paracoccus_phage	9.6e-55	51.9
WP_149130320.1\|2378036_2378630_-\|tail	phage tail tape measure protein	A0A0A7DVI6	Escherichia_phage	4.8e-08	30.0
WP_149130321.1\|2378666_2378864_-\|tail	phage tail assembly chaperone	NA	NA	NA	NA
WP_149130322.1\|2378860_2379205_-	gene transfer agent family protein	NA	NA	NA	NA
WP_149130323.1\|2379215_2379626_-\|tail	phage major tail protein, TP901-1 family	I3UM07	Rhodobacter_phage	5.4e-19	40.1
WP_149130324.1\|2379662_2380073_-	DUF3168 domain-containing protein	NA	NA	NA	NA
WP_149130325.1\|2380069_2380408_-\|head	phage head closure protein	NA	NA	NA	NA
WP_149130326.1\|2380411_2380987_-	hypothetical protein	NA	NA	NA	NA
WP_149133783.1\|2381106_2381841_+\|protease	trypsin-like serine protease	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP042331

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection