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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP038034 Achromobacter insolitus strain LCu2 chromosome, complete genome 7 crisprs WYL,csa3,DEDDh,DinG,PD-DExK 2 2 2 0

Results visualization

1. NZ_CP038034
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP038034_1 328035-328141 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP038034_2 522454-522560 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP038034_3 2126019-2126154 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP038034_4 2560267-2560499 Orphan NA
2 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP038034_5 4460149-4460276 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP038034_6 4635414-4635545 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP038034_7 5157943-5158062 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
NZ_CP038034_5 5.1|4460198|30|NZ_CP038034|CRISPRCasFinder 4460198-4460227 30 NZ_CP038034.1 4460120-4460149 0 1.0
NZ_CP038034_5 5.1|4460198|30|NZ_CP038034|CRISPRCasFinder 4460198-4460227 30 NZ_CP038034.1 951199-951228 1 0.967
NZ_CP038034_6 6.1|4635463|34|NZ_CP038034|CRISPRCasFinder 4635463-4635496 34 NZ_CP038034.1 4635548-4635581 1 0.971
NZ_CP038034_5 5.1|4460198|30|NZ_CP038034|CRISPRCasFinder 4460198-4460227 30 NZ_CP038034.1 4119197-4119226 2 0.933

1. spacer 5.1|4460198|30|NZ_CP038034|CRISPRCasFinder matches to position: 4460120-4460149, mismatch: 0, identity: 1.0

ttttttttgccgccgggccgccccaaggca	CRISPR spacer
ttttttttgccgccgggccgccccaaggca	Protospacer
******************************

2. spacer 5.1|4460198|30|NZ_CP038034|CRISPRCasFinder matches to position: 951199-951228, mismatch: 1, identity: 0.967

ttttttttgccgccgggccgccccaaggca	CRISPR spacer
tttttttttccgccgggccgccccaaggca	Protospacer
******** *********************

3. spacer 6.1|4635463|34|NZ_CP038034|CRISPRCasFinder matches to position: 4635548-4635581, mismatch: 1, identity: 0.971

cgcgttttcccttggggcggcccggcggcaaaac	CRISPR spacer
cgcgttttgccttggggcggcccggcggcaaaac	Protospacer
******** *************************

4. spacer 5.1|4460198|30|NZ_CP038034|CRISPRCasFinder matches to position: 4119197-4119226, mismatch: 2, identity: 0.933

ttttttttgccgccgggccgccccaaggca	CRISPR spacer
ttcttgttgccgccgggccgccccaaggca	Protospacer
**.** ************************

CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_CP038034_5 5.1|4460198|30|NZ_CP038034|CRISPRCasFinder 4460198-4460227 30 NZ_CP012477 Arthrobacter sp. ERGS1:01 isolate water plasmid unnamed2, complete sequence 337993-338022 7 0.767
NZ_CP038034_5 5.1|4460198|30|NZ_CP038034|CRISPRCasFinder 4460198-4460227 30 NZ_CP019241 Rhodoferax antarcticus strain DSMZ24876 plasmid unnamed1 24210-24239 8 0.733
NZ_CP038034_5 5.1|4460198|30|NZ_CP038034|CRISPRCasFinder 4460198-4460227 30 NC_019847 Sinorhizobium meliloti GR4 plasmid pRmeGR4b, complete sequence 142246-142275 8 0.733
NZ_CP038034_5 5.1|4460198|30|NZ_CP038034|CRISPRCasFinder 4460198-4460227 30 NZ_CP017105 Rhizobium gallicum strain IE4872 plasmid pRgalIE4872d, complete sequence 816-845 9 0.7
NZ_CP038034_5 5.1|4460198|30|NZ_CP038034|CRISPRCasFinder 4460198-4460227 30 NC_020548 Azoarcus sp. KH32C plasmid pAZKH, complete sequence 679218-679247 10 0.667
NZ_CP038034_6 6.1|4635463|34|NZ_CP038034|CRISPRCasFinder 4635463-4635496 34 NC_009958 Dinoroseobacter shibae DFL 12 = DSM 16493 plasmid pDSHI04, complete sequence 84233-84266 10 0.706

1. spacer 5.1|4460198|30|NZ_CP038034|CRISPRCasFinder matches to NZ_CP012477 (Arthrobacter sp. ERGS1:01 isolate water plasmid unnamed2, complete sequence) position: , mismatch: 7, identity: 0.767

ttttttttgccgccgggccgccccaaggca	CRISPR spacer
gtcatttggccgccgggccgccccaaaact	Protospacer
 *. *** ******************..* 

2. spacer 5.1|4460198|30|NZ_CP038034|CRISPRCasFinder matches to NZ_CP019241 (Rhodoferax antarcticus strain DSMZ24876 plasmid unnamed1) position: , mismatch: 8, identity: 0.733

ttttttttgccgccgggccgccccaaggca	CRISPR spacer
ggctgagcgccgccgggccgccccaaggcg	Protospacer
  .*   .*********************.

3. spacer 5.1|4460198|30|NZ_CP038034|CRISPRCasFinder matches to NC_019847 (Sinorhizobium meliloti GR4 plasmid pRmeGR4b, complete sequence) position: , mismatch: 8, identity: 0.733

ttttttttgccgccgggccgccccaaggca	CRISPR spacer
ctgatttcgccgccgggccgacccaagagt	Protospacer
.*  ***.************ ******.  

4. spacer 5.1|4460198|30|NZ_CP038034|CRISPRCasFinder matches to NZ_CP017105 (Rhizobium gallicum strain IE4872 plasmid pRgalIE4872d, complete sequence) position: , mismatch: 9, identity: 0.7

ttttttttgccgccgggccgccccaaggca	CRISPR spacer
gcgtggttgccgccgggccgcccgaagcgg	Protospacer
 . *  ***************** ***  .

5. spacer 5.1|4460198|30|NZ_CP038034|CRISPRCasFinder matches to NC_020548 (Azoarcus sp. KH32C plasmid pAZKH, complete sequence) position: , mismatch: 10, identity: 0.667

ttttttttgccgccgggccgccccaaggca	CRISPR spacer
gcagcgccgccgccgggccgtcccaaggcg	Protospacer
 .  . ..************.********.

6. spacer 6.1|4635463|34|NZ_CP038034|CRISPRCasFinder matches to NC_009958 (Dinoroseobacter shibae DFL 12 = DSM 16493 plasmid pDSHI04, complete sequence) position: , mismatch: 10, identity: 0.706

cgcgttttcccttggggcggcccggcggcaaaac	CRISPR spacer
ttcctttgcccttggggcggccctgcggtgcggc	Protospacer
. * *** *************** ****.. ..*

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 1878195 : 1900906 22 uncultured_Caudovirales_phage(30.77%) portal,head,tail,terminase,capsid,protease NA
DBSCAN-SWA_2 3103131 : 3111356 9 Moraxella_phage(28.57%) tRNA NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage