CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP043051	[Ruminococcus] gnavus ATCC 29149 strain JCM6515 chromosome, complete genome	3 crisprs	cas3HD,csa3,DEDDh,cas3,RT,PD-DExK,cas5,cas8c,cas7,cas4,cas1,cas2,DinG,cas14j	4	2	8	5

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP043051_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP043051_1

404474-404563

Orphan

Consensus_repeat	Method
TCTGCTGCGTCCTCTGCTTTTTCC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP043051_1

>merge|NZ_CP043051|1|404474-404563|CRISPRCasFinder
TCTGCTGCGTCCTCTGCTTTTTCCTTCACTGCCTCTGAAAGGTCTTTGACATGCTCACAGGCAGCCTCTGCTGCGTCCTCTGTTTTTTCC

>NZ_CP043051|1|1|404474-404563|CRISPRCasFinder
TCTGCTGCGTCCTCTGCTTTTTCC	TTCACTGCCTCTGAAAGGTCTTTGACATGCTCACAGGCAGCC
TCTGCTGCGTCCTCTGTTTTTTCC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP043051.1\|WP_009244879.1\|416584_417253_-\|GTP-pyrophosphokinase-family-protein	unknown	unknown	gnl\|CDD\|225232
NZ_CP043051.1\|WP_004840152.1\|405230_406937_+\|S8-family-peptidase	unknown	unknown	gnl\|CDD\|173804
NZ_CP043051.1\|WP_004840155.1\|403953_404436_-\|signal-peptidase-II	unknown	unknown	gnl\|CDD\|376504
NZ_CP043051.1\|WP_004840151.1\|406972_408226_-\|cation:proton-antiporter	unknown	unknown	gnl\|CDD\|223551
NZ_CP043051.1\|WP_004840159.1\|401376_402606_+\|peptidase-T	unknown	unknown	gnl\|CDD\|235484
NZ_CP043051.1\|WP_004840165.1\|396911_399509_-\|ATP-dependent-chaperone-ClpB	unknown	unknown	gnl\|CDD\|274529
NZ_CP043051.1\|WP_009244878.1\|415757_416516_-\|phospholipase	unknown	unknown	gnl\|CDD\|238879
NZ_CP043051.1\|WP_022037294.1\|400168_400591_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP043051.1\|WP_004840145.1\|415269_415761_-\|DUF4358-domain-containing-protein	unknown	unknown	gnl\|CDD\|379531
NZ_CP043051.1\|WP_039959122.1\|408393_409830_-\|ATP-dependent-Clp-protease-ATP-binding-subunit-ClpX	unknown	unknown	gnl\|CDD\|235422
NZ_CP043051.1\|WP_004840148.1\|411916_412675_-\|23S-rRNA-pseudouridine(2604)-synthase-RluF	unknown	unknown	gnl\|CDD\|236698
NZ_CP043051.1\|WP_081448171.1\|394206_394728_+\|VanZ-family-protein	unknown	unknown	gnl\|CDD\|377417
NZ_CP043051.1\|WP_004840156.1\|403115_403952_-\|NAD(+)-diphosphatase	unknown	unknown	gnl\|CDD\|234699
NZ_CP043051.1\|WP_004840166.1\|395679_396915_-\|DNA-polymerase-IV	unknown	unknown	gnl\|CDD\|176459
NZ_CP043051.1\|WP_004840167.1\|394668_395679_-\|acyltransferase-family-protein	unknown	unknown	gnl\|CDD\|225813
NZ_CP043051.1\|WP_004840160.1\|400649_401249_-\|TetR/AcrR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224228
NZ_CP043051.1\|WP_004840149.1\|409928_411896_-\|NAD-dependent-DNA-ligase-LigA	unknown	unknown	gnl\|CDD\|236137
NZ_CP043051.1\|WP_004840147.1\|412667_413828_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|270205
NZ_CP043051.1\|WP_004840157.1\|402681_403104_-\|hemerythrin-family-protein	unknown	unknown	gnl\|CDD\|274154
NZ_CP043051.1\|WP_004840146.1\|413836_415249_-\|MBOAT-family-protein	unknown	unknown	gnl\|CDD\|224610

Protein	Function_ID	Function_description	E-value
NZ_CP043051.1\|WP_009244879.1\|416584_417253_-\|GTP-pyrophosphokinase-family-protein	gnl\|CDD\|225232	COG2357, COG2357, PpGpp synthetase catalytic domain [General function prediction only].	8.1189e-68
NZ_CP043051.1\|WP_004840152.1\|405230_406937_+\|S8-family-peptidase	gnl\|CDD\|173804	cd07478, Peptidases_S8_CspA-like, Peptidase S8 family domain in CspA-like proteins. GSP (germination-specific protease) converts the spore peptidoglycan hydrolase (SleC) precursor to an active enzyme during germination of Clostridium perfringens S40 spores. Analysis of an enzyme fraction of GSP showed that it was composed of a gene cluster containing the processed forms of products of cspA, cspB, and cspC which are positioned in a tandem array just upstream of the 5' end of sleC. The amino acid sequences deduced from the nucleotide sequences of the csp genes showed significant similarity and showed a high degree of homology with those of the catalytic domain and the oxyanion binding region of subtilisin-like serine proteases. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a catalytic triad Glu/Asp/Ser. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.	0
NZ_CP043051.1\|WP_004840155.1\|403953_404436_-\|signal-peptidase-II	gnl\|CDD\|376504	pfam01252, Peptidase_A8, Signal peptidase (SPase) II.	9.18751e-24
NZ_CP043051.1\|WP_004840151.1\|406972_408226_-\|cation:proton-antiporter	gnl\|CDD\|223551	COG0475, KefB, Kef-type K+ transport systems, membrane components [Inorganic ion transport and metabolism].	2.00007e-57
NZ_CP043051.1\|WP_004840159.1\|401376_402606_+\|peptidase-T	gnl\|CDD\|235484	PRK05469, PRK05469, tripeptide aminopeptidase PepT.	0
NZ_CP043051.1\|WP_004840165.1\|396911_399509_-\|ATP-dependent-chaperone-ClpB	gnl\|CDD\|274529	TIGR03346, chaperone_ClpB, ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins. [Protein fate, Protein folding and stabilization].	0
NZ_CP043051.1\|WP_009244878.1\|415757_416516_-\|phospholipase	gnl\|CDD\|238879	cd01841, NnaC_like, NnaC (CMP-NeuNAc synthetase) _like subfamily of SGNH_hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles two of the three components of typical Ser-His-Asp(Glu) triad from other serine hydrolases. E. coli NnaC appears to be involved in polysaccharide synthesis.	1.26258e-26
NZ_CP043051.1\|WP_004840145.1\|415269_415761_-\|DUF4358-domain-containing-protein	gnl\|CDD\|379531	pfam14270, DUF4358, Domain of unknown function (DUF4358). This domain family is found in bacteria, and is approximately 110 amino acids in length.	3.76937e-28
NZ_CP043051.1\|WP_039959122.1\|408393_409830_-\|ATP-dependent-Clp-protease-ATP-binding-subunit-ClpX	gnl\|CDD\|235422	PRK05342, clpX, ATP-dependent Clp protease ATP-binding subunit ClpX.	0
NZ_CP043051.1\|WP_004840148.1\|411916_412675_-\|23S-rRNA-pseudouridine(2604)-synthase-RluF	gnl\|CDD\|236698	PRK10475, PRK10475, 23S rRNA pseudouridine(2604) synthase RluF.	1.3055e-106
NZ_CP043051.1\|WP_081448171.1\|394206_394728_+\|VanZ-family-protein	gnl\|CDD\|377417	pfam04892, VanZ, VanZ like family. This family contains several examples of the VanZ protein, but also contains examples of phosphotransbutyrylases.	3.73294e-17
NZ_CP043051.1\|WP_004840156.1\|403115_403952_-\|NAD(+)-diphosphatase	gnl\|CDD\|234699	PRK00241, nudC, NAD(+) diphosphatase.	5.98702e-64
NZ_CP043051.1\|WP_004840166.1\|395679_396915_-\|DNA-polymerase-IV	gnl\|CDD\|176459	cd03586, PolY_Pol_IV_kappa, DNA Polymerase IV/Kappa. Pol IV, also known as Pol kappa, DinB, and Dpo4, is a translesion synthesis (TLS) polymerase. Translesion synthesis is a process that allows the bypass of a variety of DNA lesions. TLS polymerases lack proofreading activity and have low fidelity and low processivity. They use damaged DNA as templates and insert nucleotides opposite the lesions. Known primarily as Pol IV in prokaryotes and Pol kappa in eukaryotes, this polymerase has a propensity for generating frameshift mutations. The eukaryotic Pol kappa differs from Pol IV and Dpo4 by an N-terminal extension of ~75 residues known as the "N-clasp" region. The structure of Pol kappa shows DNA that is almost totally encircled by Pol kappa, with the N-clasp region augmenting the interactions between DNA and the polymerase. Pol kappa is more resistant than Pol eta and Pol iota to bulky guanine adducts and is efficient at catalyzing the incorporation of dCTP. Bacterial pol IV has a higher error rate than other Y-family polymerases.	2.51678e-115
NZ_CP043051.1\|WP_004840167.1\|394668_395679_-\|acyltransferase-family-protein	gnl\|CDD\|225813	COG3274, COG3274, Predicted O-acyltransferase [General function prediction only].	2.44149e-30
NZ_CP043051.1\|WP_004840160.1\|400649_401249_-\|TetR/AcrR-family-transcriptional-regulator	gnl\|CDD\|224228	COG1309, AcrR, Transcriptional regulator [Transcription].	2.38841e-11
NZ_CP043051.1\|WP_004840149.1\|409928_411896_-\|NAD-dependent-DNA-ligase-LigA	gnl\|CDD\|236137	PRK07956, ligA, NAD-dependent DNA ligase LigA; Validated.	0
NZ_CP043051.1\|WP_004840147.1\|412667_413828_-\|hypothetical-protein	gnl\|CDD\|270205	cd14439, AlgX_N_like, N-terminal catalytic domain of putative alginate O-acetyltranferase and similar proteins. The alginate biosynthesis protein AlgX appears to be directly involved in the O-acetylation of alginate, an exopolysaccharide that is associated with the formation of persistent biofilms, such as those by mucoid strains of Pseudomonas aeruginosa that affect patients suffering from cystic fibrosis. Its N-terminal catalytic domain resembles SGNH hydrolases, though with a permuted topology. The active site matches that of the SGNH hydrolases, is well conserved, and has been verified experimentally. This wider family includes AlgX, AlgJ, AlgV, and a number of uncharacterized families, some of which may have been mis-annotated in sequence databases.	1.51256e-43
NZ_CP043051.1\|WP_004840157.1\|402681_403104_-\|hemerythrin-family-protein	gnl\|CDD\|274154	TIGR02481, hemeryth_dom, hemerythrin-like metal-binding domain. This model describes both members of the hemerythrin (TIGR00058) family of marine invertebrates and a broader collection of bacterial and archaeal homologs. Many of the latter group are multidomain proteins with signal-transducing domains such as the GGDEF diguanylate cyclase domain (TIGR00254, pfam00990) and methyl-accepting chemotaxis protein signaling domain (pfam00015). Most hemerythrins are oxygen-carriers with a bound non-heme iron, but at least one example is a cadmium-binding protein, apparently with a role in sequestering toxic metals rather than in binding oxygen. Patterns of conserved residues suggest that all prokaryotic instances of this domain bind iron or another heavy metal, but the exact function is unknown. Not surprisingly, the prokaryote with the most instances of this domain is Magnetococcus sp. MC-1, a magnetotactic bacterium.	1.49391e-29
NZ_CP043051.1\|WP_004840146.1\|413836_415249_-\|MBOAT-family-protein	gnl\|CDD\|224610	COG1696, DltB, Predicted membrane protein involved in D-alanine export [Cell envelope biogenesis, outer membrane].	3.59698e-84

>NZ_CP043051.1|WP_004840155.1|403953_404436_-|signal-peptidase-II
MKNLFGAGATAFLTCLDMAVKSEVEKWPDEEEKPFADSKKIVLRKVHNKGMCMSLLKEYPQFVKYTSLVMAAILTVWDILCLRKKGSYLKKAGLSLGVAGAWSNTLDRWMRGYVVDYIGFQTSDEKLTKITYNLGDFFLAAGSILILLSEFLHNFRKGSE
>NZ_CP043051.1|WP_004840156.1|403115_403952_-|NAD(+)-diphosphatase
MIQDIAPHQFKNEYRPVSPQKDSIALYYEEHTALMRRTQTGIEFPTFGELERLNEEIYENSIYLFTIDEKQYYLVDNLNREPHSEFTMENTEIFRTADPQYSAFAGITGYQLYQWYQTRRYCGRCGHKMRHDTKERMLFCEHCRNMEFPKICPAVIVGVTDGNRILMSKYAGRSYKKYALLAGFTEIGETVEETVAREVMEEVGLKVKNIRYYKSQPWAFSDTLLMGFYCDLDGDAEVTLDEEELALAEWFERDEIPVEPSRDSLTNEMIIKFKQGEV
>NZ_CP043051.1|WP_004840157.1|402681_403104_-|hemerythrin-family-protein
MRAEFDESLVTGNEMIDSQHKELIDKINKLLDSCETSKDKVVSVKTLDYLADYTEFHFGEEEKLQEEITYPGVEKHKEEHEKLRQVVRDLYNMLEEEEGPSAAFVEAVNKNVVEWLYNHIKTFDRSVAEYKFMHENGERL
>NZ_CP043051.1|WP_004840159.1|401376_402606_+|peptidase-T
MRAYERLLKYVTVRTPSDETSTTVPSSACQFDLAQDLIREFINLGLPKARTDEKCYVYAQIPATPGYENCPKIGFIAHLDTVSDFCDKKIVPVVTENYDGRDLPLGGSDGRVLSVSMFPHLKDLKGRTLITSNGDTILGADDKAGVAEIMTMAERVLTENIPHGQISIGFTPDEEVGRGADHFDVEKFDADFAYTMDGDTEGEIQYENFNAADAIFEIKGVNVHPGSAKDVMVNAALVAMEINAALPEGETPADTEDYEGFYHLVSMSGDVACAKLHYIVRDHDTDKFAARLETLKEISKQMNLKWGLGTVKLTIDEQYRNMAEIIKDGNMHLIENAKKACLAADVTPLILPIRGGTDGARLSFMGLPCPNLGTGGHGYHGPFEHITAEGMDKSVEVMIELVKLYAEMK
>NZ_CP043051.1|WP_004840160.1|400649_401249_-|TetR/AcrR-family-transcriptional-regulator
MNVVQNGGADLNMAVTSREEILAVCREIVAEEGLSSVNMRLVASRCNIALGSVYNYFPSKSELLLATIESVWMDIFHMNGQVLVFESFTACIAWLFDTVYKSSQKYPEFFNLHSMSFAAKDKNEGRKMMEISLMHLKKNLVQILTEDQNVRENAFENELTPEIFVEYVFTLLMSILLEKQKSCEPLLTMIAHSIYESHF
>NZ_CP043051.1|WP_022037294.1|400168_400591_-|hypothetical-protein
MKVKKRTLLLLASIVWLIAGFNIIRIGILSYTGHVTVVNILLSALVFAVFWSMVFYKLVIRHTDRIQNYEDELQFFWHFFDKKSFLIMAFMMTFGIGLRASHFAPDVFIAVFYSGLGMALFLAGVLFGVHYFQQERKVSR
>NZ_CP043051.1|WP_004840165.1|396911_399509_-|ATP-dependent-chaperone-ClpB
MNINKFTQNSMQAVQNCEKIAYDYGNQELAQEHLLYALVTQDDSLILKLLEKMSIQGPLFINRVEELLNKRPKVQGGQVFVGQDLNNALIHAEDEAKQMGDEYVSVEHIFLSLLKYASRDLKPLFREFGISREGFLHALSTVRGNQRVTSDNPEATYDTLNKYGQDLVERARDQKLDPVIGRDEEIRNVIRILSRKTKNNPVLIGEPGVGKTAAVEGLAQRIVSGDVPEGLKDKTIFALDMGALVAGAKYRGEFEERLKAVLEEVKNSDGKIILFIDELHTIVGAGKTDGAMDAGNMLKPMLARGELHCIGATTLDEYRQYIEKDAALERRFQPVMVEEPSVEDAISILRGLKERYEVFHGVKITDSALVAAATLSNRYISDRFLPDKAIDLVDEACALIKTELDSMPTELDELRRRVMQLEIEEEALKKEEDRLSRERLEHLQEELAGLKEEYAGKKVQWENEKTSVERVQKVREEIEQVNKEIQKAQREYDLNKAAELQYGRLPQLQKQLEEEEEKVKAKDLSLVHEAVTDEEIARIISRWTGIPVAKLNESERSKTLHLGDELHRRVIGQDEGVELVTEAIIRSKAGIKDPTKPIGSFLFLGPTGVGKTELAKALAQSLFDDENNMVRIDMSEYMEKYSVSRLIGAPPGYVGYDEGGQLTEAVRRKPYSVVLFDEIEKAHPDVFNVLLQVLDDGRITDSQGRTVDFKNTILIMTSNIGANYLLEGIREDGTIEESYQNLVMNDLRAHFRPEFLNRLDEIIMFKPLTKSNIHAIIDLLVKDVNKRLADKELSIELTDAAKNFVVEGGYDPMYGARPLKRYLQKNVETLAAKLILAGNVGRGDRIEIDVVDGKLEAKVKGQIVA
>NZ_CP043051.1|WP_004840166.1|395679_396915_-|DNA-polymerase-IV
MTPVIFHIDVNSAYLSWTAVEQLKNGAGTDLRMIPSIIGGDQKSRHGVVLAKSIPAKRYGIRTGEPVANAFRKCPNLVMEPPDHKMYREKSRMLMDYLRIFTKEIEQVSVDECYVDMTQAMEGFCSPVDAAMLIKNGVREKFGFTVNVGISSNKLLAKMASDFEKPDKVHTLFPEEIRVKMWPLPIGELYMAGHSSVEILKKLEILTIGDLAQADPRLITLHLKSHGQMLWEFANGIDHSSVQSQQAEAKGVGNSTTLSKDAETLEEIRPVFAHLAASVGERLKKAGQKASMVSMEIKYYDFRKISHQKQLMRPTSDQNVLYESACELFEEVWTGEPVRLLGIRTAKLVDEKEPMQLSIFDIEIPKPLDEKHQKLKDAMEKLDARFGKGTVIKASLMKKEPDTKEKDEKRR
>NZ_CP043051.1|WP_004840167.1|394668_395679_-|acyltransferase-family-protein
MRRNYNLEIIRMISCIFVIVIHVTNYFCRAYGEITQSEYLFALLLDTLARVSVPCFFMISGALLLGREEPLKKHGERLLRFLIALVVWSVVYYIWNRAFMKTEYDLKEILYVPTEPHLWYLYAMIPIYMVLPFFQVMCKGMSGKLERALLVVCSASVVFNYVVSLQNGEAYYDLPLIGDKVYMLYIFIGYFIYKYRRYIRISQKWAAAIFIGCMTGVFALTVFITQRSGEHYERVLEYGCPLIVLAGAAFFMILIRWQDCEIRLKERTRRLLDIGCGCSFGIYLIHILFLDGYKKYAEPATVSAWIAVPVLIAGIGGLSFLCITLLRRSRIGRAIT
>NZ_CP043051.1|WP_081448171.1|394206_394728_+|VanZ-family-protein
MKQERWKSILKPLTILPVIVMLCTIFGFSNQNGTTSGGLSQKVSRQIVTVCDTLFHQDLAEETIEHYTEKIEYPLRKAAHATEYLILTLLAALPLYTYGLRGKKLLLALFLFCVICASGDEFHQSFIPGRSPQITDVFVDSIGILTGCGITYLVLRNRPSDTASSKKRNTQKG
>NZ_CP043051.1|WP_004840152.1|405230_406937_+|S8-family-peptidase
MPYSDLCREKILSEDYHDFIVSDIRMPFLQDMLEKDCCLQNPGFFYQCAYLSKSVIKPVSLENYSYFSIPKCYSLLSMQALNQAGILPIQNHSTIQLSGKQVMIGFLDTGIDYQNPVFQHLDKTTRIAGIWDQTIQSGTPPESFDYGSHYTPDMINEALASEDPYSLVPSVDNNGHGTFLASIAAGSGDPDAQFIGAAPESVIAVVKLKQAKQYLRDYYFIPNTAPAFQENDIMLGMRYLHLLAEKLGLPLIFCLALGSNLGGHSGSLPLSIIAQQYTLLSNRIPVIGVGNEADQRHHFYSEIMNTSDTKTVEIRVGENTSGFVMELWTELPNILSISLTSPSGESTSRIPIRAGTSTTFNFLFENTTVYIDYRLFVESTASELIHFRFSDAAPGIWKLVVEPVQIIDGRFHIWLPVREFLSGEVYFLNSNPYYTLTAPSDSVQPISVSYYDSFNNGLALSSGRGFTRTEQVKPDFTAPGISITGALPGGQFESRSGSSTSVGITAGAAALLVEWHLQQKKIPSVSTALIKSLLTLGATRNPDMKYPNREWGYGQLNLYNTFEAMRQL
>NZ_CP043051.1|WP_004840151.1|406972_408226_-|cation:proton-antiporter
MDYKYLLDLVIILLCTKALGLLTRRVQMPQVVGALLAGLLLGPAGVGILTETSFLQSVAEIGVIVLMFCAGMETDIKELKACGKASFIIALCGVLVPLAGGFATAYFFNRPGMIESDASASIFLQNIFIGVILTATSVSITVETLKELGKLKTRSGNAILGAAIIDDILGIVALTIVTSISDPSVKIGMVMLKIVGFFVFAAVVGFIFYKLYKNWVDKANKEKHRHTIVAFVFCLLMAYIAEDVFGVADITGAFIAGLIISNVQRSTYLETKFDTLSYLLLSPVFFASIGLKVELPKMSAAIVGFAVALTIVAVLTKVVGCGFGAKICHYKNYQAKRIGIGMISRGEVALIVASKGAALGLLGSAFLGPIIIVVVITTIITPVFLKVVFAPGTAPVPEQIVPESERVKTIYESKKRE
>NZ_CP043051.1|WP_039959122.1|408393_409830_-|ATP-dependent-Clp-protease-ATP-binding-subunit-ClpX
MSDNDFIIIDEEKETPVTTEGKESSAKEEHEDEYEKICFICHRPESVTGKMIDLPNHITVCPDCMQKSFDAMTNGSIDYSRLMNMPGVQFLNLSDLENMAPPKTQKIKKKKEKPKEFQKLDIKNIPAPHKIKGKLDEYVVGQEYAKKAMAVAVYNHYKRVATDSVDDIEIEKSNMLMIGPTGSGKTYLVKTLARLLDVPLAITDATSLTEAGYIGDDIESVVSKLLAAADNDVEKAEQGIIFIDEIDKIAKKRNSSQRDVSGESVQQGLLKLLEGSEVEVPVGANSKNAMVPLTTVNTKNILFICGGAFPDLEGIIKERLMHKTSMGFNAELKDQYDNDKDILSKVTVEDLRNFGMIPEFIGRLPIIFTLKGLDKDMYVKILKEPKNAILKQYQKLLALDEVKLDFDDGALEAIAEKAMKKETGARALRAIIEEFMLDIMYEIPKDENIGEVTITRSYIEGTGGPLISLRGQEVPRLP
>NZ_CP043051.1|WP_004840149.1|409928_411896_-|NAD-dependent-DNA-ligase-LigA
MEAKKKRMQELVELLNRARRAYEQEDTEIMSNYEYDRLYDELEGLERELGTTLASSPTVNVGYEVLSELPKERHEKPMLSLDKTKDVEQLKSFLGEQKAVISWKMDGLTIVLTYQNGRLQKAVTRGNGEVGEVITNNAKVFRNLPLQIPYQGELILRGEAVIGYKDFERINEQIEDVDARYKNPRNLCSGSVRQLNNEITARRNVKFFAFTLVKADGAEFENSRMQQLSWLEKQGFEVVEHHLADRASIEEEVAWFSEQIVHNDFPSDGLVLVYDDIAYGQSLGTTAKFPRDSYAFKWADEIRETTLLEIEWSPSRTGLINPVAIFEPVELEGTTVSRASVHNISIMEDLELGVGDVIQVYKANMIIPQIAENLTRSGVKDIPQVCPVCGGATKIKMENETKTLYCTNPECQAKHLKSFALFVSRDAMNIEGLSEATLEKFIGEGFIRDFTDIYHLDRYEETIKTLEGFGEKSYAKLITSVENSRSTTMPKVIYSLGIANIGLSNAKMICRAFDNDPQRMMQATVEELVDIQGVGEVIARTFVDYFSDETHRDLFKRLLQEVKLQKEEGEESAQIFENMNFVITGSVEHFANRREVKEIIESRGGKVTGSVTGKTNYLINNDVQSASSKNKKAKELNVPIISESQFLEMLETGTV
>NZ_CP043051.1|WP_004840148.1|411916_412675_-|23S-rRNA-pseudouridine(2604)-synthase-RluF
MNNRILQEYQKTKEEVRLNKYLSEAGVCSRREADRLIESGRVSVDGKRAQTGMKIVPGQVVKVGKKVVSKQDEMVVLAVNKPAGIVCTEERRERNSIVRFLDYPIRITYVGRLDKDSKGLLLMTNNGDIINKMMRAGNRHEKEYKVTVDKEITQEFLEKMASGVPILDTVTRPCKVEKIGKYTFSIILTQGLNRQIRRMCEALGYQVRELIRVRIMNIHLGRLKEGEYRKLTDAELNELYDQIKDSSNETVI
>NZ_CP043051.1|WP_004840147.1|412667_413828_-|hypothetical-protein
MSERRKTRKRKRIEYMIGIGFLICVFGIGIINLLLPSKKISEEENRGLQQKPELSVSAVTSGSYMDQYEKYQADQFMGRNMWRSLKVGFSRLAGSKEENGVFIGKKGQLLEDIAVPDQDVLKANMKAIQSFSQKYSDIPVNMLLVPDAANILSDRLPFTATVADQSQYIAQVKKELGDSVQWIDAVKPLTRHSDEKIYYKTDHHWTAKGAYYVFQEAARTLNLEEQETEYASYPITTDFNGSLASKSGCRLNEKEQIDIYVPKTEDNDVVVNYVDEQKKTASLYDSSKLNSRDKYAVYLGGNFSVVDIRTVSESNRRLLLIKDSYANSFVPFLTPYFREIVMVDPRYYSGTIGDIMDTYEITDTLFLYSANIFLQDNNISGVLSSE
>NZ_CP043051.1|WP_004840146.1|413836_415249_-|MBOAT-family-protein
MLFSSITFLFVFLPIVLAVYFLVPYRFKNLVMLIASLFFYAWGEPVYVILMILSICLNYVCGLDIAEKADDDRKKRNSLIFAVVVNLLLLGFFKYYGFLMESVNAVLPFDIPYRELPLPIGISFYTFQALSYIIDVYRGEVKPQKKLMYFALYISMFPQLIAGPIVRYVDIEEQLEHRFMNLTKFGQGAMYFMRGLAKKVILANTTGAVFEQIAAMHLGSYSVMTAWIGCISYAFQIYFDFGGYSDMAIGLGKMFGFEFLENFHYPYVSTSVTEFWRRWHISLSTWFREYVYIPLGGNRKGDSRTITNLLIVWMLTGFWHGAAWNFVAWGLYYGIILILEKFVWGQYVEKWPGAVRHIYAMVLILIGWVLFFSPSLGYALKYVGVMFGIGASGLMDKLGWFYLLSNWLIYLMAVLGSSSIGYRLMRNIQRAPGSRVGKYIMTGVMYLVMFALSLAFLVTQSFNPFLYFRF
>NZ_CP043051.1|WP_004840145.1|415269_415761_-|DUF4358-domain-containing-protein
MTDKIKNLKKTVVIKYALVAVIVVYVALLLIFTSGSTKSFAAVEKKVEASLDTKAMKKAGVQGLKRYYGLNSADYEGVMLYTAESSMSAQEILLVKTKTTEQAEEVKAAVEQRRANRRNDFDGYAPDQVQLLDEAQISVRGKFVFYAVSPKAETYKSVFSKSL
>NZ_CP043051.1|WP_009244878.1|415757_416516_-|phospholipase
MKRQKKKYVIIGAGAVAVLAAVTLIAEGISYFSAETVDTKEGLAIIKAAEKENVKDIEKKINKLDTKDKLESQEASGEINYKSLFSSSVVMGDSISEAFTEYDLLNASSVVAKIGVELDELDDQIKTVADINPQVIFLSYGMNDVIATNGDTDLFIKEYKAVIDQLRKKLPDTTLYVNSIFPVSAAKQEEKPVFQKIPEYNAALQKMCDENQIAFLDNTSLVSDTYYEEDGIHFKADFYPIWLKRMAEVATL
>NZ_CP043051.1|WP_009244879.1|416584_417253_-|GTP-pyrophosphokinase-family-protein
MEEMKFEELTELKEPERLLESAMPFQKLIMQYQCALLEVKTKFEVLNHELSINSDQNPILSIESRIKKPISILEKMKRKNIEISVQAIEENICDIAGIRVICCFPKDIYTLAEKICEQDDIRLIERKDYIKNPKPNGYRSLHLILEVPVFFMNEKKPMKVEVQMRTIAMDFWASIEHKLYYKKQTDGFPDSVSEDLGICAEQLHTIDMKMQEISERIYHQER

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Crispr_ID: NZ_CP043051_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP043051_2

2292635-2294523

TypeI

I-C

Consensus_repeat	Method
GTCACTCCCTTCGCGGGAGTGTGGATTGAAAT	PILER-CR
GTCACTCCCTTCGCGGGAGTGTGGATTGAAAT	CRISPRCasFinder
GTCACTCCCTTCGCGGGAGTGTGGATTGAAAT	CRT

28 spacers

cas2,cas1,cas4,cas7,cas8c,cas5,cas3

The CRISPR arrays of NZ_CP043051_2

>merge|NZ_CP043051|2|2292635-2294523|PILER-CR,CRISPRCasFinder,CRT
GTCACTCCCTTCGCGGGAGTGTGGATTGAAATATCATTTGCAATCAAATCACAGACGGAGCAGGCGGCAAGTCACTCCCTTCGCGGGAGTGTGGATTGAAATGATGTGTGGTTGAATCACGTTCGAGAACTGAGGGGTCACTCCCTTCGCGGGAGTGTGGATTGAAATCCCGGTGCCTTATCCTGTGAATCTACTCCATCACGTCACTCCCTTCGCGGGAGTGTGGATTGAAATAAATCTGGCGATCTCGGATTATATGAATATCGAGGTCACTCCCTTCGCGGGAGTGTGGATTGAAATAAACCTATCATTATCCGTATTTCCTTTCGATTCGTCACTCCCTTCGCGGGAGTGTGGATTGAAATTTGCAGATGTTTTGCTCGTATCGTCCAGAAACATGTCACTCCCTTCGCGGGAGTGTGGATTGAAATTATAAATCCGCCCAATTCTCCCTCTGCTACATCAGTCACTCCCTTCGCGGGAGTGTGGATTGAAATTTGTTGAATCTTTCTTGTCATTTGTTTCCTTATCTGTCACTCCCTTCGCGGGAGTGTGGATTGAAATCTGTCGATTATGAGCCGGGGATTGTCCAAAGACGTCACTCCCTTCGCGGGAGTGTGGATTGAAATAGTGAATAATCATCATTTAACACAGTCTGGAACTCGTCACTCCCTTCGCGGGAGTGTGGATTGAAATAGAACTTAATCAAAAAGAAAGGAGTGATTGATACGGTCACTCCCTTCGCGGGAGTGTGGATTGAAATCTCATCGGTCAGAATAGAGTCATTGAACTTGCAAGGTCACTCCCTTCGCGGGAGTGTGGATTGAAATAAGGTGATGCAGGGGCTTACGTGGGATGAAGTGGCGTCACTCCCTTCGCGGGAGTGTGGATTGAAATATTCCACGGTACAGCTTGTTTTTGAGTTTCGGAAGGTCACTCCCTTCGCGGGAGTGTGGATTGAAATCCCATCCCGTGTGTTTAGGGATCAGGTCGGGAAAAACGTCACTCCCTTCGCGGGAGTGTGGATTGAAATGTCTTAGGTTGTTTAAGGTGTGTAACCATCCACGTCACTCCCTTCGCGGGAGTGTGGATTGAAATCTCGGTATACTGCTGCCGATAGTCTCCATACAGGTCACTCCCTTCGCGGGAGTGTGGATTGAAATAGCATAACCTTCCAACTTTTCCTCTACGCCTGTGTCACTCCCTTCGCGGGAGTGTGGATTGAAATCCCCAACTGTAGCATGGCATATCCTTTCCAAAGTGTCACTCCCTTCGCGGGAGTGTGGATTGAAATGAAAGTACGGCACAAGAAATCCACTTGAGATTGTGTCACTCCCTTCGCGGGAGTGTGGATTGAAATCCAGAGTTTTTGATCTCCTGCGGATATTCTGGGCGTCACTCCCTTCGCGGGAGTGTGGATTGAAATTCAACATTCCATAGCTAAAATCAATACCATAGGCCGTCACTCCCTTCGCGGGAGTGTGGATTGAAATATGGTTGTGAGTGATATCGTAGCTTACCGGAACGTCACTCCCTTCGCGGGAGTGTGGATTGAAATAAGTTCCGGTTGCCAGAAGGGATGATCCTGACAGTCACTCCCTTCGCGGGAGTGTGGATTGAAATATGTCACGTTCGATTGTGTATTCGAACGCATCCAAGGTCACTCCCTTCGCGGGAGTGTGGATTGAAATCAGTCCATAAGCGCAAGCTCCGGATACTCTTCCAGTCACTCCCTTCGCGGGAGTGTGGATTGAAATCAAACATACCAGTTGTACATAAATTACTATCACAAGTCACTCCCTTCGCGGGAGTGTGGATTGAAATCAGGCGGGACTTTCGGATAATTGGATCCATTAAGTCACTCCCTTCGCGGGAGTGTGGTGGTATAT

>NZ_CP043051|2|1|2292635-2294458|PILER-CR
GTCACTCCCTTCGCGGGAGTGTGGATTGAAAT	ATCATTTGCAATCAAATCACAGACGGAGCAGGCGGCAA
GTCACTCCCTTCGCGGGAGTGTGGATTGAAAT	GATGTGTGGTTGAATCACGTTCGAGAACTGAGGG
GTCACTCCCTTCGCGGGAGTGTGGATTGAAAT	CCCGGTGCCTTATCCTGTGAATCTACTCCATCAC
GTCACTCCCTTCGCGGGAGTGTGGATTGAAAT	AAATCTGGCGATCTCGGATTATATGAATATCGAG
GTCACTCCCTTCGCGGGAGTGTGGATTGAAAT	AAACCTATCATTATCCGTATTTCCTTTCGATTC
GTCACTCCCTTCGCGGGAGTGTGGATTGAAAT	TTGCAGATGTTTTGCTCGTATCGTCCAGAAACAT
GTCACTCCCTTCGCGGGAGTGTGGATTGAAAT	TATAAATCCGCCCAATTCTCCCTCTGCTACATCA
GTCACTCCCTTCGCGGGAGTGTGGATTGAAAT	TTGTTGAATCTTTCTTGTCATTTGTTTCCTTATCT
GTCACTCCCTTCGCGGGAGTGTGGATTGAAAT	CTGTCGATTATGAGCCGGGGATTGTCCAAAGAC
GTCACTCCCTTCGCGGGAGTGTGGATTGAAAT	AGTGAATAATCATCATTTAACACAGTCTGGAACTC
GTCACTCCCTTCGCGGGAGTGTGGATTGAAAT	AGAACTTAATCAAAAAGAAAGGAGTGATTGATACG
GTCACTCCCTTCGCGGGAGTGTGGATTGAAAT	CTCATCGGTCAGAATAGAGTCATTGAACTTGCAAG
GTCACTCCCTTCGCGGGAGTGTGGATTGAAAT	AAGGTGATGCAGGGGCTTACGTGGGATGAAGTGGC
GTCACTCCCTTCGCGGGAGTGTGGATTGAAAT	ATTCCACGGTACAGCTTGTTTTTGAGTTTCGGAAG
GTCACTCCCTTCGCGGGAGTGTGGATTGAAAT	CCCATCCCGTGTGTTTAGGGATCAGGTCGGGAAAAAC
GTCACTCCCTTCGCGGGAGTGTGGATTGAAAT	GTCTTAGGTTGTTTAAGGTGTGTAACCATCCAC
GTCACTCCCTTCGCGGGAGTGTGGATTGAAAT	CTCGGTATACTGCTGCCGATAGTCTCCATACAG
GTCACTCCCTTCGCGGGAGTGTGGATTGAAAT	AGCATAACCTTCCAACTTTTCCTCTACGCCTGT
GTCACTCCCTTCGCGGGAGTGTGGATTGAAAT	CCCCAACTGTAGCATGGCATATCCTTTCCAAAGT
GTCACTCCCTTCGCGGGAGTGTGGATTGAAAT	GAAAGTACGGCACAAGAAATCCACTTGAGATTGT
GTCACTCCCTTCGCGGGAGTGTGGATTGAAAT	CCAGAGTTTTTGATCTCCTGCGGATATTCTGGGC
GTCACTCCCTTCGCGGGAGTGTGGATTGAAAT	TCAACATTCCATAGCTAAAATCAATACCATAGGCC
GTCACTCCCTTCGCGGGAGTGTGGATTGAAAT	ATGGTTGTGAGTGATATCGTAGCTTACCGGAAC
GTCACTCCCTTCGCGGGAGTGTGGATTGAAAT	AAGTTCCGGTTGCCAGAAGGGATGATCCTGACA
GTCACTCCCTTCGCGGGAGTGTGGATTGAAAT	ATGTCACGTTCGATTGTGTATTCGAACGCATCCAAG
GTCACTCCCTTCGCGGGAGTGTGGATTGAAAT	CAGTCCATAAGCGCAAGCTCCGGATACTCTTCCA
GTCACTCCCTTCGCGGGAGTGTGGATTGAAAT	CAAACATACCAGTTGTACATAAATTACTATCACAA
GTCACTCCCTTCGCGGGAGTGTGGATTGAAAT

>NZ_CP043051|2|2|2292635-2294523|CRISPRCasFinder
GTCACTCCCTTCGCGGGAGTGTGGATTGAAAT	ATCATTTGCAATCAAATCACAGACGGAGCAGGCGGCAA
GTCACTCCCTTCGCGGGAGTGTGGATTGAAAT	GATGTGTGGTTGAATCACGTTCGAGAACTGAGGG
GTCACTCCCTTCGCGGGAGTGTGGATTGAAAT	CCCGGTGCCTTATCCTGTGAATCTACTCCATCAC
GTCACTCCCTTCGCGGGAGTGTGGATTGAAAT	AAATCTGGCGATCTCGGATTATATGAATATCGAG
GTCACTCCCTTCGCGGGAGTGTGGATTGAAAT	AAACCTATCATTATCCGTATTTCCTTTCGATTC
GTCACTCCCTTCGCGGGAGTGTGGATTGAAAT	TTGCAGATGTTTTGCTCGTATCGTCCAGAAACAT
GTCACTCCCTTCGCGGGAGTGTGGATTGAAAT	TATAAATCCGCCCAATTCTCCCTCTGCTACATCA
GTCACTCCCTTCGCGGGAGTGTGGATTGAAAT	TTGTTGAATCTTTCTTGTCATTTGTTTCCTTATCT
GTCACTCCCTTCGCGGGAGTGTGGATTGAAAT	CTGTCGATTATGAGCCGGGGATTGTCCAAAGAC
GTCACTCCCTTCGCGGGAGTGTGGATTGAAAT	AGTGAATAATCATCATTTAACACAGTCTGGAACTC
GTCACTCCCTTCGCGGGAGTGTGGATTGAAAT	AGAACTTAATCAAAAAGAAAGGAGTGATTGATACG
GTCACTCCCTTCGCGGGAGTGTGGATTGAAAT	CTCATCGGTCAGAATAGAGTCATTGAACTTGCAAG
GTCACTCCCTTCGCGGGAGTGTGGATTGAAAT	AAGGTGATGCAGGGGCTTACGTGGGATGAAGTGGC
GTCACTCCCTTCGCGGGAGTGTGGATTGAAAT	ATTCCACGGTACAGCTTGTTTTTGAGTTTCGGAAG
GTCACTCCCTTCGCGGGAGTGTGGATTGAAAT	CCCATCCCGTGTGTTTAGGGATCAGGTCGGGAAAAAC
GTCACTCCCTTCGCGGGAGTGTGGATTGAAAT	GTCTTAGGTTGTTTAAGGTGTGTAACCATCCAC
GTCACTCCCTTCGCGGGAGTGTGGATTGAAAT	CTCGGTATACTGCTGCCGATAGTCTCCATACAG
GTCACTCCCTTCGCGGGAGTGTGGATTGAAAT	AGCATAACCTTCCAACTTTTCCTCTACGCCTGT
GTCACTCCCTTCGCGGGAGTGTGGATTGAAAT	CCCCAACTGTAGCATGGCATATCCTTTCCAAAGT
GTCACTCCCTTCGCGGGAGTGTGGATTGAAAT	GAAAGTACGGCACAAGAAATCCACTTGAGATTGT
GTCACTCCCTTCGCGGGAGTGTGGATTGAAAT	CCAGAGTTTTTGATCTCCTGCGGATATTCTGGGC
GTCACTCCCTTCGCGGGAGTGTGGATTGAAAT	TCAACATTCCATAGCTAAAATCAATACCATAGGCC
GTCACTCCCTTCGCGGGAGTGTGGATTGAAAT	ATGGTTGTGAGTGATATCGTAGCTTACCGGAAC
GTCACTCCCTTCGCGGGAGTGTGGATTGAAAT	AAGTTCCGGTTGCCAGAAGGGATGATCCTGACA
GTCACTCCCTTCGCGGGAGTGTGGATTGAAAT	ATGTCACGTTCGATTGTGTATTCGAACGCATCCAAG
GTCACTCCCTTCGCGGGAGTGTGGATTGAAAT	CAGTCCATAAGCGCAAGCTCCGGATACTCTTCCA
GTCACTCCCTTCGCGGGAGTGTGGATTGAAAT	CAAACATACCAGTTGTACATAAATTACTATCACAA
GTCACTCCCTTCGCGGGAGTGTGGATTGAAAT	CAGGCGGGACTTTCGGATAATTGGATCCATTAA
GTCACTCCCTTCGCGGGAGTGTGGTGGTATAT

>NZ_CP043051|2|1|2292635-2294523|CRT
GTCACTCCCTTCGCGGGAGTGTGGATTGAAAT	ATCATTTGCAATCAAATCACAGACGGAGCAGGCGGCAA
GTCACTCCCTTCGCGGGAGTGTGGATTGAAAT	GATGTGTGGTTGAATCACGTTCGAGAACTGAGGG
GTCACTCCCTTCGCGGGAGTGTGGATTGAAAT	CCCGGTGCCTTATCCTGTGAATCTACTCCATCAC
GTCACTCCCTTCGCGGGAGTGTGGATTGAAAT	AAATCTGGCGATCTCGGATTATATGAATATCGAG
GTCACTCCCTTCGCGGGAGTGTGGATTGAAAT	AAACCTATCATTATCCGTATTTCCTTTCGATTC
GTCACTCCCTTCGCGGGAGTGTGGATTGAAAT	TTGCAGATGTTTTGCTCGTATCGTCCAGAAACAT
GTCACTCCCTTCGCGGGAGTGTGGATTGAAAT	TATAAATCCGCCCAATTCTCCCTCTGCTACATCA
GTCACTCCCTTCGCGGGAGTGTGGATTGAAAT	TTGTTGAATCTTTCTTGTCATTTGTTTCCTTATCT
GTCACTCCCTTCGCGGGAGTGTGGATTGAAAT	CTGTCGATTATGAGCCGGGGATTGTCCAAAGAC
GTCACTCCCTTCGCGGGAGTGTGGATTGAAAT	AGTGAATAATCATCATTTAACACAGTCTGGAACTC
GTCACTCCCTTCGCGGGAGTGTGGATTGAAAT	AGAACTTAATCAAAAAGAAAGGAGTGATTGATACG
GTCACTCCCTTCGCGGGAGTGTGGATTGAAAT	CTCATCGGTCAGAATAGAGTCATTGAACTTGCAAG
GTCACTCCCTTCGCGGGAGTGTGGATTGAAAT	AAGGTGATGCAGGGGCTTACGTGGGATGAAGTGGC
GTCACTCCCTTCGCGGGAGTGTGGATTGAAAT	ATTCCACGGTACAGCTTGTTTTTGAGTTTCGGAAG
GTCACTCCCTTCGCGGGAGTGTGGATTGAAAT	CCCATCCCGTGTGTTTAGGGATCAGGTCGGGAAAAAC
GTCACTCCCTTCGCGGGAGTGTGGATTGAAAT	GTCTTAGGTTGTTTAAGGTGTGTAACCATCCAC
GTCACTCCCTTCGCGGGAGTGTGGATTGAAAT	CTCGGTATACTGCTGCCGATAGTCTCCATACAG
GTCACTCCCTTCGCGGGAGTGTGGATTGAAAT	AGCATAACCTTCCAACTTTTCCTCTACGCCTGT
GTCACTCCCTTCGCGGGAGTGTGGATTGAAAT	CCCCAACTGTAGCATGGCATATCCTTTCCAAAGT
GTCACTCCCTTCGCGGGAGTGTGGATTGAAAT	GAAAGTACGGCACAAGAAATCCACTTGAGATTGT
GTCACTCCCTTCGCGGGAGTGTGGATTGAAAT	CCAGAGTTTTTGATCTCCTGCGGATATTCTGGGC
GTCACTCCCTTCGCGGGAGTGTGGATTGAAAT	TCAACATTCCATAGCTAAAATCAATACCATAGGCC
GTCACTCCCTTCGCGGGAGTGTGGATTGAAAT	ATGGTTGTGAGTGATATCGTAGCTTACCGGAAC
GTCACTCCCTTCGCGGGAGTGTGGATTGAAAT	AAGTTCCGGTTGCCAGAAGGGATGATCCTGACA
GTCACTCCCTTCGCGGGAGTGTGGATTGAAAT	ATGTCACGTTCGATTGTGTATTCGAACGCATCCAAG
GTCACTCCCTTCGCGGGAGTGTGGATTGAAAT	CAGTCCATAAGCGCAAGCTCCGGATACTCTTCCA
GTCACTCCCTTCGCGGGAGTGTGGATTGAAAT	CAAACATACCAGTTGTACATAAATTACTATCACAA
GTCACTCCCTTCGCGGGAGTGTGGATTGAAAT	CAGGCGGGACTTTCGGATAATTGGATCCATTAA
GTCACTCCCTTCGCGGGAGTGTGGTGGTATAT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP043051.1\|WP_004612300.1\|2281509_2283198_+\|recombinase-family-protein	unknown	unknown	gnl\|CDD\|214861
NZ_CP043051.1\|WP_004612296.1\|2286672_2287113_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP043051.1\|WP_039960138.1\|2306640_2306817_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP043051.1\|WP_004844659.1\|2301664_2301847_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP043051.1\|WP_004612274.1\|2297000_2297507_+\|ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|224059
NZ_CP043051.1\|WP_004612294.1\|2287797_2289552_+\|type-I-C-CRISPR-associated-protein-Cas8c/Csd1	cas8c	cd09757_cas8c_CAS-I-C	gnl\|CDD\|378245
NZ_CP043051.1\|WP_004844656.1\|2303611_2304769_+\|TlpA-family-protein-disulfide-reductase	unknown	unknown	gnl\|CDD\|239264
NZ_CP043051.1\|WP_039960142.1\|2299471_2300716_-\|DDE-type-integrase/transposase/recombinase	unknown	unknown	gnl\|CDD\|366234
NZ_CP043051.1\|WP_004612298.1\|2283721_2285887_+\|CRISPR-associated-helicase/endonuclease-Cas3	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|224124
NZ_CP043051.1\|WP_009245303.1\|2286221_2286689_+\|DUF3990-domain-containing-protein	unknown	unknown	gnl\|CDD\|379042
NZ_CP043051.1\|WP_004844667.1\|2294788_2295121_+\|GGDEF-domain-containing-protein	unknown	unknown	gnl\|CDD\|143635
NZ_CP043051.1\|WP_148844610.1\|2301919_2303476_+\|MarR-family-transcriptional-regulator	unknown	unknown	unknown
NZ_CP043051.1\|WP_004844664.1\|2296019_2296958_+\|HAMP-domain-containing-histidine-kinase	unknown	unknown	gnl\|CDD\|223715
NZ_CP043051.1\|WP_004844655.1\|2304935_2305826_+\|4Fe-4S-binding-protein	unknown	unknown	gnl\|CDD\|223425
NZ_CP043051.1\|WP_004612292.1\|2290463_2291126_+\|CRISPR-associated-protein-Cas4	cas4	pfam01930_cas4_CAS-I	gnl\|CDD\|273040
NZ_CP043051.1\|WP_004612295.1\|2287138_2287801_+\|type-I-C-CRISPR-associated-protein-Cas5	cas5	cd09752_cas5_CAS-I-C	gnl\|CDD\|187782
NZ_CP043051.1\|WP_131588787.1\|2294526_2294802_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|379945
NZ_CP043051.1\|WP_004612293.1\|2289552_2290464_+\|type-I-C-CRISPR-associated-protein-Cas7/Csd2	cas7	cd09689_cas7_CAS-I-C	gnl\|CDD\|377458
NZ_CP043051.1\|WP_004844676.1\|2291125_2292157_+\|type-I-C-CRISPR-associated-endonuclease-Cas1	cas1	cd09721_cas1_CAS-I-C	gnl\|CDD\|188360
NZ_CP043051.1\|WP_004612290.1\|2292169_2292460_+\|CRISPR-associated-endonuclease-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|187856

Protein	Function_ID	Function_description	E-value
NZ_CP043051.1\|WP_004612300.1\|2281509_2283198_+\|recombinase-family-protein	gnl\|CDD\|214861	smart00857, Resolvase, Resolvase, N terminal domain. The N-terminal domain of the resolvase family contains the active site and the dimer interface. The extended arm at the C-terminus of this domain connects to the C-terminal helix-turn-helix domain of resolvase.	4.13869e-43
NZ_CP043051.1\|WP_004612274.1\|2297000_2297507_+\|ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|224059	COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms].	2.47052e-72
NZ_CP043051.1\|WP_004612294.1\|2287797_2289552_+\|type-I-C-CRISPR-associated-protein-Cas8c/Csd1	gnl\|CDD\|378245	pfam09709, Cas_Csd1, CRISPR-associated protein (Cas_Csd1). CRISPR loci appear to be mobile elements with a wide host range. This entry represents proteins that tend to be found near CRISPR repeats. The species range, so far, is exclusively bacterial and mesophilic, although CRISPR loci are particularly common among the archaea and thermophilic bacteria. Clusters of short DNA repeats with nonhomologous spacers, which are found at regular intervals in the genomes of phylogenetically distinct prokaryotic species, comprise a family with recognisable features. This family is known as CRISPR (short for Clustered, Regularly Interspaced Short Palindromic Repeats). A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins.	0
NZ_CP043051.1\|WP_004844656.1\|2303611_2304769_+\|TlpA-family-protein-disulfide-reductase	gnl\|CDD\|239264	cd02966, TlpA_like_family, TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.	7.49787e-26
NZ_CP043051.1\|WP_039960142.1\|2299471_2300716_-\|DDE-type-integrase/transposase/recombinase	gnl\|CDD\|366234	pfam00665, rve, Integrase core domain. Integrase mediates integration of a DNA copy of the viral genome into the host chromosome. Integrase is composed of three domains. The amino-terminal domain is a zinc binding domain pfam02022. This domain is the central catalytic domain. The carboxyl terminal domain that is a non-specific DNA binding domain pfam00552. The catalytic domain acts as an endonuclease when two nucleotides are removed from the 3' ends of the blunt-ended viral DNA made by reverse transcription. This domain also catalyzes the DNA strand transfer reaction of the 3' ends of the viral DNA to the 5' ends of the integration site.	3.87818e-25
NZ_CP043051.1\|WP_004612298.1\|2283721_2285887_+\|CRISPR-associated-helicase/endonuclease-Cas3	gnl\|CDD\|224124	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms].	2.40111e-61
NZ_CP043051.1\|WP_009245303.1\|2286221_2286689_+\|DUF3990-domain-containing-protein	gnl\|CDD\|379042	pfam13151, DUF3990, Protein of unknown function (DUF3990). A family of uncharacterized proteins found by clustering human gut metagenomic sequences.	5.65773e-70
NZ_CP043051.1\|WP_004844667.1\|2294788_2295121_+\|GGDEF-domain-containing-protein	gnl\|CDD\|143635	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain. Diguanylate-cyclase (DGC) or GGDEF domain: Originally named after a conserved residue pattern, and initially described as a domain of unknown function 1 (DUF1). This domain is widely present in bacteria, linked to a wide range of non-homologous domains in a variety of cell signaling proteins. The domain shows homology to the adenylyl cyclase catalytic domain. This correlates with the functional information available on two GGDEF-containing proteins, namely diguanylate cyclase and phosphodiesterase A of Acetobacter xylinum, both of which regulate the turnover of cyclic diguanosine monophosphate. Together with the EAL domain, GGDEF might be involved in regulating cell surface adhesion in bacteria.	3.01452e-25
NZ_CP043051.1\|WP_004844664.1\|2296019_2296958_+\|HAMP-domain-containing-histidine-kinase	gnl\|CDD\|223715	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms].	4.49333e-37
NZ_CP043051.1\|WP_004844655.1\|2304935_2305826_+\|4Fe-4S-binding-protein	gnl\|CDD\|223425	COG0348, NapH, Polyferredoxin [Energy production and conversion].	7.18495e-26
NZ_CP043051.1\|WP_004612292.1\|2290463_2291126_+\|CRISPR-associated-protein-Cas4	gnl\|CDD\|273040	TIGR00372, conserved_hypothetical_protein, CRISPR-associated protein Cas4. This model represents a family of proteins associated with CRISPR repeats in a wide set of prokaryotic genomes. This scope of this model has been broadened since it was first built to describe an archaeal subset only. The function of the protein is undefined. Distantly related proteins, excluded from this model, include ORFs from Mycobacteriophage D29 and Sulfolobus islandicus filamentous virus and a region of the Schizosaccharomyces pombe DNA replication helicase Dna2p.	1.91466e-30
NZ_CP043051.1\|WP_004612295.1\|2287138_2287801_+\|type-I-C-CRISPR-associated-protein-Cas5	gnl\|CDD\|187782	cd09651, Cas5_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas5 is a RAMP superfamily protein; Subunit of the Cascade complex; in subtype I-C this protein might be the endoribonuclease that generates crRNAs; also known as DevS family.	3.88536e-99
NZ_CP043051.1\|WP_131588787.1\|2294526_2294802_+\|hypothetical-protein	gnl\|CDD\|379945	pfam17202, sCache_3_3, Single cache domain 3.	0.00639816
NZ_CP043051.1\|WP_004612293.1\|2289552_2290464_+\|type-I-C-CRISPR-associated-protein-Cas7/Csd2	gnl\|CDD\|377458	pfam05107, Cas_Cas7, CRISPR-associated protein Cas7. CRISPR-associated protein Cas7 is one of the components of the type I-B cascade-like antiviral defense complex. In Haloferax volcanii, Cas5, Cas6 and Cas7 form a small complex that aids the stability of CRISPR-derived RNA.	6.41001e-148
NZ_CP043051.1\|WP_004844676.1\|2291125_2292157_+\|type-I-C-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|188360	TIGR03640, cas1_DVULG, CRISPR-associated endonuclease Cas1, subtype I-C/DVULG. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the DVULG subtype of CRISPR/Cas system.	0
NZ_CP043051.1\|WP_004612290.1\|2292169_2292460_+\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|187856	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas2 is present in majority of CRISPR/Cas systems along with Cas1; RNAse specific to U-rich regions; Possesses an RRM/ferredoxin fold.	2.78357e-28

>NZ_CP043051.1|WP_004612290.1|2292169_2292460_+|CRISPR-associated-endonuclease-Cas2
MLVLITYDVNTETAAGKRRLRQVAKQCVNYGRRVQNSVFECILDNAQCVMLKAKLTDIIDEEVDSLRFYYLGNQYKTKVEHVGVDRGISADGILIM
>NZ_CP043051.1|WP_004844676.1|2291125_2292157_+|type-I-C-CRISPR-associated-endonuclease-Cas1
MRKLLNTLYVTSENSYLALDGENIVILEDSTEIGRLPLHNLEGIVSFGYKGTSPALMGACADRNISLCYMTPQGKFLARVTGKVKGNVILREQQYASTKSEEQSLEIAKNCILGKVHNARWVLERAVRDHSFQIDVERVKAASEYLKNSLGYIQNSQSKDQLRGYEGEAASIYFGVFEQLILQQKKDFKFQGRNKRPPKDNVNALLSFVYTLLTNQIISALESVGLDPYVGYLHTERPGRASLALDLIEELRAVLADRFVLSLINKRIISGKNFVTKENGAVLMDDDLRKKLLTEWQNKKKETLTHPYLKEKIEWGMVPYVQAMLLARYLRGDLDGYPVFLWK
>NZ_CP043051.1|WP_004612292.1|2290463_2291126_+|CRISPR-associated-protein-Cas4
MEYAEDDYLMLSGIQHFKFCRRQWALIHIEQQWAENVHTVVGELMHKRAHDPYLVEKRKDLLVARSLPIASRLLGVSGECDVVEFHRCEDGVKLHGHRGLFSVYPIEYKKGKPKVTEEDRLQLAAQVLCLEEMFSTEIPEGALFYGETRRREVITITEELRQEVIDMFQEMHQYFDRKYTPKMKYSKSCNACSLRDICLPRLGKSGSVRAYITQMLKEEE
>NZ_CP043051.1|WP_004612293.1|2289552_2290464_+|type-I-C-CRISPR-associated-protein-Cas7/Csd2
MSEVIKNRYEFVVLFDVENGNPNGDPDAGNMPRIDPESGLGLVTDVCLKRKIRNYIETVKEDAEGYKIYIKDDVPLNRSDREACASVGVEETDEKKVTESLKKLKKNDENVDVKIRDYMCQNFFDIRTFGAVMTTFVKAALNCGQVRGPVQLGFARSIDPIVSQEVTITRVAITTEKDAANKSTEMGRKSVVPYGLYRVEGYVSANLARKVTGFSEEDLELLWEAIINMFEHDHSAARGNMAVRELIVFKHSKELGDCPAYKLFDSVEVRKKEEVEYPRSYRDYIVEVHEENIPDSVEMKRMI
>NZ_CP043051.1|WP_004612294.1|2287797_2289552_+|type-I-C-CRISPR-associated-protein-Cas8c/Csd1
MILQALAKYYENLAEEGKVPKPGWCSAKVSYQINLSEEGDVKGISCLKTEEERGKKTVQVPQVFLVPEMVTRSSGVSANFLCDNAKYLLGISQETDEKSKKRAKECFDAARERHLSILAPGKSTMAKAVYLFFEKWNPEEAMEHPEIRDNWEEITDGSNLIFGMDMDYAQDDTEVKVAWDSHNSGESKDVQGICLVTGERAEIARIHRGIKGVPGAQSSGAALVSFNAPAFESYGKEQSYNAPVGTYGEFAYTTALNYLLSNRTYSLQIGDTMVVFWAESAETDYQAVFMGCMDSPTDNQEELKSLFERIRLGQPVIYQGNELDPEQRFYVLGLAPNAARLSVRFFYENSFGNILKNIFAHYKRMELIRPKWEQKEYLSVREMLFETVNKKSTDKKPVSNMAAMTFRAILSGSRYPERLYSDTLIRIRAEQDEGKLNWRRIAIIKAYLMRNRNWEKGEDYMGLNEESNDIAYVLGRLFFVLEAIQIEANPDIQATIRDRYYNSACGTPASVFPILIKLKNSHLKKIGREKDGAKKYYEKLLAELMWKIDCQKGFPKRLSLEEQGMFAIGYYHQKQKKYEKREEK
>NZ_CP043051.1|WP_004612295.1|2287138_2287801_+|type-I-C-CRISPR-associated-protein-Cas5
MGMGVKVKVWGDYALFSRPELKVERYSYDVMTPSAARGILEAIYWHPGMRWIIDKIYVKNPIHFTSVRRNEVKSKVLASNVLSAYNGGKKPLYISSKEEIVQRASMILTNVEYVIEAHFEMTEKANETDNPGKFKDIMMRRLRRGECYHMPYFGCREFPANFALCEEEEIKTAFDDVPEKDFGLMLFDMDYSDKENISPMFFRAVMKRGVIDLQNCEVIR
>NZ_CP043051.1|WP_004612296.1|2286672_2287113_+|hypothetical-protein
MARKNNNHLFFTCSLIEYIGRKVKRTRKQVVDFLGEERIERIYEYADVFHCEPIEKVADEFIEESKITLGNFDNEKECKYLVPDYWNIGEVYERLIEDSYGDEEVIKGIWEVYHSWIDEHISDYNTDFYYQPRDYIAACYEEGVIL
>NZ_CP043051.1|WP_009245303.1|2286221_2286689_+|DUF3990-domain-containing-protein
MILYHGSNAIVEYPEIRKAKYNKDFYFGFYCTRYQEQAERWATRYGKKGYVNQYEYEPNEKLNYLLFEEMTEEWLDFIVACRQGKSHKYDIVEGPMADDTIYNYIQNFIDGKISRAAFWELVKFKYPTHQISFHTISALDTLKFVGCEVSYGKKK
>NZ_CP043051.1|WP_004612298.1|2283721_2285887_+|CRISPR-associated-helicase/endonuclease-Cas3
MEYIAHIDEKDKKRIQTVKNHLEGTAKLSGEFAGKFGKEDWGYCNGMLHDIGKYSVDFLKRITGESNQRVDHSTAGARVCVEKGGKYRFLEYCIGGHHTGLPDYGSNYDNAGDPTLMGRRKKKISDYQVYQTEIDIPEIVTDPFDFKKTVNLDFSMSVFIRMLYSCLVDADFLDTEAFMSRGKKVRNSGEPVGVLLEKLEKHVSEWLKNQDMDTVNGRRTEILKHCLEEGRSERGLFRLTVPTGGGKTIASLAFALRHAVENQMDRVIYVIPYTSIIEQNAKVFREILGDENVLENHCNIAYEVDSQRAEELQPMQLAAENWDKPVVVTTNVQFFESLFANKPSKCRKLHNIANSVIIFDEAQMLPNDYLKPCIAMIEELLNNYKTSVVLCTATQPALKSFFQSEVLATELCPRMDEQFHFFKRTLFENIGTVTEDCLMNKLTEEYQALCIVNTKKRAQNIYKELKEDGVYHLSTSMYPKHRKRVLNEIRERLGENKKCILISTSLVEAGVDLDFQSVYRELAGVDSMIQAAGRCNREGQRKVEESKVLIFRFEEKENILGQRQQIDVTKSLIADGRNLSDRETITRYFEMLYHIKGESLDKKKIMDEFTNKKIKYRFAQVGKDFRLIEQNTKTVFINCEEEADKILRELKVKGFTRSGMRNATQYCVTVYDQTFDKMYGAGMLKPIAENMEDFYELTDESRYTEEMGLELEIDNGMVLFF
>NZ_CP043051.1|WP_004612300.1|2281509_2283198_+|recombinase-family-protein
MKNKKIKCDIYTRVSTTMQVDGYSLDAQKEKLKRYAEFQNMEIVNEYSDEGKSGKSVEGRPEFQRMLDNIENGTDEVQFVLVFKLSRFGRNAADVLNSLQRMQDFGVNLICVEDGIDSSKDSGKLMISVLSAVAEIERENILVQTIEGRKQKAREGKWNGGFAPYGYELVNGELQIAEDEAEIIRLIYDKFIHTNMGISAIAAWLNQHGYKKKKRQNNTLDAFAASFIKGVLDNPVYCGKLAYGRRKNEKVSGTRNEYRIVKQENYMLHDGIHEGIVSETDWELAHQKREKTGVKYEKTHSLDHEHILSGILRCPLCGSGMYGNVNRKKKKDGTLYKDYFYYACKHRRLVDGHKCGYRKQWSEEKINNAVEEVIRKLVKNPKFEEAILNKIGSRIDTEEIEKEIERLEKQHRQLTGAKGRLGQQMDSLDIMDKFYEKKYQDMETRLYRLYDEIEGVENSIEEVKNRLLNIRQQKISEENVYQFLLYFDKLYDKFTDLEKKEFLNSFVEQVDIYEQEQPDGRFLKHIKFRFPVYFGDRETQELCWDNESIVETVCCLQKREII
>NZ_CP043051.1|WP_131588787.1|2294526_2294802_+|hypothetical-protein
MDGLPEDADDFRYPGDAIEPEIQSELERALSGETVLPEKILDTDWGNIFIAYYPLYNESGEVIGALGIEVAADIEAEAVHDKSIIQRHGKY
>NZ_CP043051.1|WP_004844667.1|2294788_2295121_+|GGDEF-domain-containing-protein
MANTDFMTELKNRNSYETDRQNLDAKKKWNGLTVAVIDVNNLKLVNDRLGHAVGDDCIVNAARVLQSVESQKVTAYRYGGDEFILLLENYSEPEKLLVRVKEKFAKYGDK
>NZ_CP043051.1|WP_004844664.1|2296019_2296958_+|HAMP-domain-containing-histidine-kinase
MRWETVALLVFGFLCGMTVMYILNRRQRIQEFNKIAEITEDILNERKVQAFSTGEETLYSKLEHQLVRVQEMLQGRSEEAERSRDEIQKLISQIAHQMRTPLMNMETYIGFLEDGKEQMSEELFFQSVDALKNSQGKLGFLVESFIRMARLEQHILQIKKEEPDLLKTVRNGFGQIQRRAEEKEIQFQIILPEQVTCLHDPNWLGEAFYNILDNAVKYSEYKGLIKVDVQQKERFVKIQVRDYGIGIEPGEENAVFQRFYRGKRVTTQDGFGIGLYLAREIVSRHQGFLMIRRKEKGVLIEINLPSGLLEVC
>NZ_CP043051.1|WP_004612274.1|2297000_2297507_+|ATP-binding-cassette-domain-containing-protein
MEMVKAIGLKKYYVTDSYEVHALDGVTFSVEDGEFLAIVGTSGSGKTTLLNLLGGLDVPTEGGVWIRGKSLKDMVAEERTIFRRRNIGFVFQQYNLVPMLSVYENIVLPLWLDGTGIDQELFEEIVMLLGIQNQLERLPGTLSGGQQQRVAIARALMTKPAVVLADVN
>NZ_CP043051.1|WP_039960142.1|2299471_2300716_-|DDE-type-integrase/transposase/recombinase
MKQEKQQEIALMRYGAIAPIIAGLDERYPSKTAFYTEISAKGLMEPDGKLHHYAPATIEKWYLDYQNHGFEGLVPKGRSDAGMSRKLDEELQERIRYFKTNYPRMSAAAIYRQLKSDGSVINGQVSESTVSRFVKRLQSELRQTPNKDMRRYERPHINEVWCGDSSVGPRLTDSDGKKHRIYIIALIDDASRFITGIDVFYNDNFINLMSVMRSAIAKYGRPKVFNFDNGKSYKNKQMELLAARIGTTLSYCQPYTPTGKAKIERWFRTMKDQWMAALDMRDFHSLEELRGSLHAFVQRYNQSPHSSLHGLSPQDRFFSEPEQIRRLSEEDITQNFLLEIERRVSADSVIVIDQIEYEVDYRFARQRIRLRYSPDMKEIFIVESDGTLTPIRLLNKTENALIKREKVHLCKGDE
>NZ_CP043051.1|WP_004844659.1|2301664_2301847_+|hypothetical-protein
MYLFDEQPIVANKTLARELGLNEALVLQQINYWIEINKKSGKNYHDGKYWTYNSIRACIP
>NZ_CP043051.1|WP_148844610.1|2301919_2303476_+|MarR-family-transcriptional-regulator
MLLTDKYADKIHGIITCYDRMIIQGYIPNWSHAEAMTAYMKLNGIRIFDYPTSFSQPLTEQVRQNAEKIDHENGMEIEFIRKLHAFRKDDRIQNIIAETGKTEGLIHIFSAMECCNTYRPWHDKTTGKTFLKFDQSKCLHYYFYFIDRELGLCYLRVPTWPPFRLQFYMNGHNLLAYKLDKKQLSYRMQDNAFLEISDIETAQKLSDRINPQGLHKVLDVFARRYSPVPESLGLGYTWTVQQIECATDIMFRKPEYLAPIYDEIIHTAIYTVKPDNIATFLGQRITYNCTKEIGTNYNQRILGTRIKHHMGDVSIKMYDKFGCVLRIESTCNDISTFRVEREVQHRDGTSDIRKAPLKKSIYSLYQLFTILKSTNYRYLEFISSFDDHSSGRKKLDEVSHSRREKERTYRGFNFFDSRDLSVLEAISKGEYMTFGIQGKQIRQHLPKITPSAMTRIFKRLKVHELIEKIPGSYKYLITALGKEIIAAGLSIKNLILVPALRLDFPDAEILPFCVENHL
>NZ_CP043051.1|WP_004844656.1|2303611_2304769_+|TlpA-family-protein-disulfide-reductase
MKKIVSRGACLLLASCLSLNAVGCQKSNENNKIKEGQSISSEEAGMSINANGKNETFKPSDYTLEAKKEYVYEYLGLEFKLSDKFRNYIADKKIAMLDDQSPIDKELKYAILTFEKMTEEQKNAVIEKMGDGYKNWQNELERIGTIGIFEKNTSEEKISKITKCDTHTKIGVSSDGKYDCYLSTNSGAESNLLDELKRTEIQIIDKKERPENGFVLSEKTDLENTEAFNKESVKDLRKLSTKDINGKDFTSKDFEKYDLTMVNVFATWCTACVKEIPDLVEVQNEMKSKGVNIVGVVTDTVDDTGENKEAIEKSKLIHEKTKASYPFLMPDKTNFNGRLNGIQAMPETFFVDSNGNIVGDTYSGAKSAKEWKQVIEKELEKIKNK
>NZ_CP043051.1|WP_004844655.1|2304935_2305826_+|4Fe-4S-binding-protein
MDRIKNIINGSTKKDKYKIRDRFRHLFQSVWFLITNSYFEGFKTGKIYGGNLKKICVPGMNCYSCPGAKGSCPIGSLQAVIGNSKYKISYYIVGILFFIGALVGRFVCGWLCPFGLIQDLLHKIPFFKKVETFKFDKHLRKLKYIILLVFVIILPLFLVDILGQGSPYFCKLICPIGMLEGGLPLVLLNKSMRNAIGFLYYWKGIILIVTLLLSIIIYRPFCKYICPLGAIYSIFNPISIFRYRLDTDKCINCGKCKKVCQMNIDPVENCNHLECIRCGRCKNACPVDAISYGVRK
>NZ_CP043051.1|WP_039960138.1|2306640_2306817_+|hypothetical-protein
MFERIDYRVIRIDGEYAYLQKLEDENAEEKCVAMALLPPEIQEGCHIAYEMMEYRMIK

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Crispr_ID: NZ_CP043051_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP043051_3

3357932-3358018

Orphan

Consensus_repeat	Method
CTCGCCGGACGATCCTGACGGGAT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP043051_3

>merge|NZ_CP043051|3|3357932-3358018|CRISPRCasFinder
CTCGCCGGACGATCCTGACGGGATCCATTCTGACCGGAAGCCGGACGCTGTCCGTTTCTTCCGCCTGCCGGACGATCCTGACGGGAT

>NZ_CP043051|3|3|3357932-3358018|CRISPRCasFinder
CTCGCCGGACGATCCTGACGGGAT	CCATTCTGACCGGAAGCCGGACGCTGTCCGTTTCTTCCG
CCTGCCGGACGATCCTGACGGGAT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP043051.1\|WP_039960197.1\|3349725_3350796_-\|response-regulator	unknown	unknown	gnl\|CDD\|381091
NZ_CP043051.1\|WP_039960200.1\|3345912_3346833_-\|sugar-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224096
NZ_CP043051.1\|WP_004844759.1\|3354387_3355347_-\|bifunctional-oligoribonuclease/PAP-phosphatase-NrnA	unknown	unknown	gnl\|CDD\|223691
NZ_CP043051.1\|WP_004844753.1\|3360142_3360610_-\|ribosome-maturation-factor-RimP	unknown	unknown	gnl\|CDD\|234627
NZ_CP043051.1\|WP_009244317.1\|3367714_3367978_+\|30S-ribosomal-protein-S20	unknown	unknown	gnl\|CDD\|376586
NZ_CP043051.1\|WP_009244308.1\|3352543_3353443_-\|bifunctional-riboflavin-kinase/FAD-synthetase	unknown	unknown	gnl\|CDD\|235536
NZ_CP043051.1\|WP_004844765.1\|3346921_3348247_-\|carbohydrate-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270451
NZ_CP043051.1\|WP_004844749.1\|3366547_3367525_-\|GPR-endopeptidase	unknown	unknown	gnl\|CDD\|237076
NZ_CP043051.1\|WP_004844754.1\|3358929_3360123_-\|transcription-termination/antitermination-protein-NusA	unknown	unknown	gnl\|CDD\|237061
NZ_CP043051.1\|WP_101870972.1\|3345049_3345832_-\|carbohydrate-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|223472
NZ_CP043051.1\|WP_039960202.1\|3365308_3366478_-\|stage-II-sporulation-protein-P	unknown	unknown	gnl\|CDD\|377838
NZ_CP043051.1\|WP_022037037.1\|3358628_3358907_-\|YlxR-family-protein	unknown	unknown	gnl\|CDD\|377288
NZ_CP043051.1\|WP_004844762.1\|3350783_3352535_-\|sensor-histidine-kinase	unknown	unknown	gnl\|CDD\|225519
NZ_CP043051.1\|WP_004844756.1\|3358318_3358642_-\|ribosomal-L7Ae/L30e/S12e/Gadd45-family-protein	unknown	unknown	gnl\|CDD\|236077
NZ_CP043051.1\|WP_009244315.1\|3363288_3365211_-\|DNA-gyrase-subunit-B	unknown	unknown	gnl\|CDD\|235542
NZ_CP043051.1\|WP_004844760.1\|3353445_3354366_-\|tRNA-pseudouridine(55)-synthase-TruB	unknown	unknown	gnl\|CDD\|178886
NZ_CP043051.1\|WP_004844752.1\|3361015_3363259_-\|DNA-topoisomerase-4-subunit-A	unknown	unknown	gnl\|CDD\|235502
NZ_CP043051.1\|WP_039960195.1\|3368067_3368709_-\|orotate-phosphoribosyltransferase	unknown	unknown	gnl\|CDD\|234771
NZ_CP043051.1\|WP_004844758.1\|3355353_3355725_-\|30S-ribosome-binding-factor-RbfA	unknown	unknown	gnl\|CDD\|376719
NZ_CP043051.1\|WP_004844764.1\|3348472_3349729_-\|extracellular-solute-binding-protein	unknown	unknown	gnl\|CDD\|224567

Protein	Function_ID	Function_description	E-value
NZ_CP043051.1\|WP_039960197.1\|3349725_3350796_-\|response-regulator	gnl\|CDD\|381091	cd17536, REC_YesN-like, phosphoacceptor receiver (REC) domain of YesN and related helix-turn-helix containing response regulators. This family is composed of uncharacterized response regulators that contain a REC domain and a AraC family helix-turn-helix (HTH) DNA-binding output domain, including Bacillus subtilis uncharacterized transcriptional regulatory protein YesN and Staphylococcus aureus uncharacterized response regulatory protein SAR0214. YesN is a member of the two-component regulatory system YesM/YesN and SAR0214 is a member of the probable two-component regulatory system SAR0215/SAR0214. Also included in this family is the AlgR-like group of LytTR/AlgR family response, which includes Pseudomonas aeruginosa positive alginate biosynthesis regulatory protein AlgR and Bacillus subtilis sensory transduction protein LytT, among others. REC domains function as phosphorylation-mediated switches within response regulators, but some also transfer phosphoryl groups in multistep phosphorelays.	3.9495e-55
NZ_CP043051.1\|WP_039960200.1\|3345912_3346833_-\|sugar-ABC-transporter-permease	gnl\|CDD\|224096	COG1175, UgpA, ABC-type sugar transport systems, permease components [Carbohydrate transport and metabolism].	2.07129e-46
NZ_CP043051.1\|WP_004844759.1\|3354387_3355347_-\|bifunctional-oligoribonuclease/PAP-phosphatase-NrnA	gnl\|CDD\|223691	COG0618, COG0618, Exopolyphosphatase-related proteins [General function prediction only].	5.27992e-64
NZ_CP043051.1\|WP_004844753.1\|3360142_3360610_-\|ribosome-maturation-factor-RimP	gnl\|CDD\|234627	PRK00092, PRK00092, ribosome maturation protein RimP; Reviewed.	7.0186e-62
NZ_CP043051.1\|WP_009244317.1\|3367714_3367978_+\|30S-ribosomal-protein-S20	gnl\|CDD\|376586	pfam01649, Ribosomal_S20p, Ribosomal protein S20. Bacterial ribosomal protein S20 interacts with 16S rRNA.	6.42822e-21
NZ_CP043051.1\|WP_009244308.1\|3352543_3353443_-\|bifunctional-riboflavin-kinase/FAD-synthetase	gnl\|CDD\|235536	PRK05627, PRK05627, bifunctional riboflavin kinase/FAD synthetase.	1.21805e-114
NZ_CP043051.1\|WP_004844765.1\|3346921_3348247_-\|carbohydrate-ABC-transporter-substrate-binding-protein	gnl\|CDD\|270451	cd14748, PBP2_UgpB, The periplasmic-binding component of ABC transport system specific for sn-glycerol-3-phosphate; possesses type 2 periplasmic binding fold. This group includes the periplasmic component of an ABC transport system specific for sn-glycerol-3-phosphate (G3P) and closely related proteins from archaea and bacteria. Under phophate starvation conditions, Escherichia coli can utilize G3P as phosphate source when exclusively imported by an ATP-binding cassette (ABC) transporter composed of the periplasmic binding protein, UgpB, the transmembrane subunits, UgpA and UgpE, and a homodimer of the nucleotide binding subunit, UgpC. Members of this group belong to the type 2 periplasmic-binding fold superfamily. PBP2 proteins are comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. The majority of PBP2 proteins function in the uptake of small soluble substrates in eubacteria and archaea. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	1.77239e-30
NZ_CP043051.1\|WP_004844749.1\|3366547_3367525_-\|GPR-endopeptidase	gnl\|CDD\|237076	PRK12362, PRK12362, germination protease; Provisional.	2.43845e-138
NZ_CP043051.1\|WP_004844754.1\|3358929_3360123_-\|transcription-termination/antitermination-protein-NusA	gnl\|CDD\|237061	PRK12327, nusA, transcription elongation factor NusA; Provisional.	1.14891e-180
NZ_CP043051.1\|WP_101870972.1\|3345049_3345832_-\|carbohydrate-ABC-transporter-permease	gnl\|CDD\|223472	COG0395, UgpE, ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism].	7.10338e-72
NZ_CP043051.1\|WP_039960202.1\|3365308_3366478_-\|stage-II-sporulation-protein-P	gnl\|CDD\|377838	pfam07454, SpoIIP, Stage II sporulation protein P (SpoIIP). This family contains the bacterial stage II sporulation protein P (SpoIIP) (approximately 350 residues long). It has been shown that a block in polar cytokinesis in Bacillus subtilis is mediated partly by transcription of spoIID, spoIIM and spoIIP. This inhibition of polar division is involved in the locking in of asymmetry after the formation of a polar septum during sporulation. Engulfment in Bacillus subtilis is mediated by two complementary systems: the first includes the proteins SpoIID, SpoIIM and SpoIIP (DMP) which carry out the engulfment, and the second includes the SpoIIQ-SpoIIIAGH (Q-AH) zipper, that recruits other proteins to the septum in a second-phase of the engulfment. The course of events follows as the incorporation firstly of SpoIIB into the septum during division to serve directly or indirectly as a landmark for localising SpoIIM and then SpoIIP and SpoIID to the septum. SpoIIP and SpoIID interact together to form part of the DMP complex. SpoIIP itself has been identified as an autolysin with peptidoglycan hydrolase activity.	1.77085e-60
NZ_CP043051.1\|WP_022037037.1\|3358628_3358907_-\|YlxR-family-protein	gnl\|CDD\|377288	pfam04296, DUF448, Protein of unknown function (DUF448).	2.71372e-35
NZ_CP043051.1\|WP_004844762.1\|3350783_3352535_-\|sensor-histidine-kinase	gnl\|CDD\|225519	COG2972, COG2972, Predicted signal transduction protein with a C-terminal ATPase domain [Signal transduction mechanisms].	3.13903e-46
NZ_CP043051.1\|WP_004844756.1\|3358318_3358642_-\|ribosomal-L7Ae/L30e/S12e/Gadd45-family-protein	gnl\|CDD\|236077	PRK07714, PRK07714, YlxQ family RNA-binding protein.	2.51852e-31
NZ_CP043051.1\|WP_009244315.1\|3363288_3365211_-\|DNA-gyrase-subunit-B	gnl\|CDD\|235542	PRK05644, gyrB, DNA gyrase subunit B; Validated.	0
NZ_CP043051.1\|WP_004844760.1\|3353445_3354366_-\|tRNA-pseudouridine(55)-synthase-TruB	gnl\|CDD\|178886	PRK00130, truB, tRNA pseudouridine synthase B; Provisional.	1.06224e-124
NZ_CP043051.1\|WP_004844752.1\|3361015_3363259_-\|DNA-topoisomerase-4-subunit-A	gnl\|CDD\|235502	PRK05560, PRK05560, DNA gyrase subunit A; Validated.	0
NZ_CP043051.1\|WP_039960195.1\|3368067_3368709_-\|orotate-phosphoribosyltransferase	gnl\|CDD\|234771	PRK00455, pyrE, orotate phosphoribosyltransferase; Validated.	1.69226e-11
NZ_CP043051.1\|WP_004844758.1\|3355353_3355725_-\|30S-ribosome-binding-factor-RbfA	gnl\|CDD\|376719	pfam02033, RBFA, Ribosome-binding factor A.	1.68171e-40
NZ_CP043051.1\|WP_004844764.1\|3348472_3349729_-\|extracellular-solute-binding-protein	gnl\|CDD\|224567	COG1653, UgpB, ABC-type sugar transport system, periplasmic component [Carbohydrate transport and metabolism].	2.73497e-43

>NZ_CP043051.1|WP_004844758.1|3355353_3355725_-|30S-ribosome-binding-factor-RbfA
MRKNSIKNTRINTEVQRELSNILRGGIKDPRVAPMTSVVAVEVAPDLKTCKAYISVLGDKKAQEDTITGLQSAEGYIRRELARTINMRNTPEIRFIMDQSIEYGVNMTKKINDLTKDLKSEDE
>NZ_CP043051.1|WP_004844759.1|3354387_3355347_-|bifunctional-oligoribonuclease/PAP-phosphatase-NrnA
MKIVLSDILKGKKRIALSGHVRPDGDCVGSSMGLYLYLTEQFPEIEVDLYLEKIPASFSIISRTEEIRHTLSEETAYDLFICLDCGDEQRLGPFAPLLRQAAHTVCIDHHVSNDAFAELNYIRPEASSTSELVYTLLEDEKISKACAEALYMGIAHDTGVFQYSCTSPETMEAAAQLLRKGIDGSEIIEKTYFEKTYIQNQILGRALLESMLVLEKQVVVSVVSRKEMEFFEAVPSDLEGIVAQLRQTKGVEVAIFLHETDTREYKVSLRSKGKVNVSSIAQYFGGGGHVRAAGVTMKGSAHDVINNLLRQITLQLKEA
>NZ_CP043051.1|WP_004844760.1|3353445_3354366_-|tRNA-pseudouridine(55)-synthase-TruB
MVNGILNVYKEKGYTSHDVVAKLRGIVGQKKIGHTGTLDPDAEGVLPVCLGRATKVCDMLTEKDKTYEAVLLLGKETDTQDISGTVLRVGETEGLTQEQVKDCVMSFVGEYDQIPPMYSALKVNGKKLYELAREGKTIERKSRKVEIKEIRILEMALPRVRMEVSCSKGTYIRTLCHDIGEKLGCFGCMESLLRTKVSRFEIESSLKLSEIQKKREEGKLSEIITPLDAVFFQYPAVTVKKEGQALAYNGNEIPIRFVTDMEERKNQEWIRVYDLENHFIGIFCFDKNRKKLTVEKMFLDQEEIRG
>NZ_CP043051.1|WP_009244308.1|3352543_3353443_-|bifunctional-riboflavin-kinase/FAD-synthetase
MQYVTDLSKYQTENRTAVTLGKFDGLHRGHQELISRIQRFADQEKAESVVFAFDMGKEALMTGEEKKAYLEGCVDTLIICPFTEAIREMEAEEFIEKILIEQLHAAYIAVGTDFHFGHQKRGDICMLKQYAKRYGYELEIVEKAVYRKREISSTYIREALKVGNVELAEKLLGYRYRTEGVVEHGQKLGRTLGFPTLNVAWKPEKAAPRFGVYACRVKMDGTWYCGIGNLGIKPTVTDAKRILTEVYVFDYKGDAYGKYVEIEFCAFERPESRFASLEELKTQVDRDILFGMEYFRAQQ
>NZ_CP043051.1|WP_004844762.1|3350783_3352535_-|sensor-histidine-kinase
MKKGKKKPSFRTKLIFLTLSACIISTLILGIAQMVLSVFHFSRQARSDLEFYLENTSGQFDTRIKNMENMVISLRHNNVLKHFIAGEAYNEQEAREQFANSTDLFSEMNMVDSASPFIDCIYLFNENGEWVSSRFYPETVENMELQNQIYKEINSSFLKSSNEYWYMTHDERAYVCMRVYNEEMEESGCCIISLGKSAVDTLFSKTKEYPESSWLITGEKGQILFANEKGKEQAKQMLEIQDLGSSEEKIGNQMTLFYGGKTGFGIELRMALPKNLIYASIRSTVQPFAVIFLIVIGITAIVVFAVSMRMTRPLKFIGEDIRKFGNGRLDAQMREFDTREFDEISTRFNEMTGQIKNLITEVYEKQLLATQAQVKYLQSQINPHFMFNILSMLSMKAGLQGNKELQKLLSAFSRLIQGKIFRNGEIEIPLFQEMELIEFYLLLQGERFAGKITYDILCSEEVKNARIPRLSVEPLVENAVSHGLEPKPGSGHIRVEAKEENGKLRIQIKDDGVGFDVEEQKKNKGQAVEDEKHTHIGLTNTQQMLHTIYGEEASMKIESTPGAGTCVTMCLPLEKGGRKSCGE
>NZ_CP043051.1|WP_039960197.1|3349725_3350796_-|response-regulator
MWRVMIADDEPYIREGLEKLIPWEELGCELIYVAENGQDLLEQIRSCPPDIAIIDIKMPLMDGMEVAEYIYKNHIRTSVIFLTAYADFQYARKAIQYQVSDYIVKTAALEEIPAAIANIKQRLESKNMTWYRMLLVTPVRQGEKVRKFFLHAFHSFEYRALSSGTEEEGLVLTVNDSERTEEIFSCCEKMKAFCKNFLGETPQILCSRAYQQGDDSSLLYEQTKAYAKGRSAEQILIVPQNAEEGDGTDTLLKRVQTYIRNHYTERLTLADIAEAVHVSSSYLSRFYKLKAGENLFDTINSLRVEKAKELLLRGDKKIYEIAALTGFEDTAYFSKVFKKYAGCPPKEYEQSGGRNL
>NZ_CP043051.1|WP_004844764.1|3348472_3349729_-|extracellular-solute-binding-protein
MRKGTWVLLLLMTACLLGGCSKESAEQTEITLIHGWGSMESEHVRMRQIYKDFEKEHPEIKLNLMSMTSSDEVIKKTKNMLSVGEVPDLIFTGGYGKDSVYRFMEEKNKAADLMPYLEKDQEFADSVAPEIISYWQKDGKLYTLSDVLLLGGGYWYNADIFEKAGIESVPETWDEFLEACEKIQSWSQNEGKSVIPVQITKENSAYLADALLLDTSKEAQDAVENHSMMLSAKELFPVLETMKQIRQYGDSTDKNYGYRDEGSMFNSGNTAMYINGVWASKLIDEKIDACYAPFPGKNGSTIASSSVCLGYIVGNTGNQETMDASVEFLKYMLSEKVQKRILLETGQMPSSPKIHLEEYKEQIPRMCNAVEAIRGADRIIEVPDNLWTADQLENFRNQIMEVLNGTLDEEQFCTNLYQ
>NZ_CP043051.1|WP_004844765.1|3346921_3348247_-|carbohydrate-ABC-transporter-substrate-binding-protein
MKKKRIISLILATTMAATVVVSGCGKSGDSEKTDDGKKKTEASDDKVLEFYHGYYQDASEWAPAQVMRDIYDEFAKEHADGEVEFKAIPTEDIDSVVENKVAGGSYPDMVDLAGRSVSLAAISQDLLLDMKPYIDEEGIKDNVGINYTQNDVDGKIYTVHDQLLTLGYWYNDKVLKDAGATTPDTWKNWSDFEGAMEKVRSAGGDVYAYGAGQGSTRCFNAILGMSENGRKIVGEPLTEEAIESKEFEEAFKQVANMDQKNGSSNASSNADDGANDWAADFNKGQSAVFFNGVWAAGGFEDTTNFKPAIFPGSVSLSSASGGITAANDMSDAEKELALEFVKYMTSDEVQTKIFKEVGANPCTTTLDLNALAEGSDEKTKLLAEACSQANDAEYVIATIDSTWGTDIANAIGNKLIESTVSGTDVNAKFEELKSELIGLIG
>NZ_CP043051.1|WP_039960200.1|3345912_3346833_-|sugar-ABC-transporter-permease
MEITGKKQKLRKNAFILFFLLPTLVCFCVFYLYPIATVVISSFAKWDYTNLNDMQMYSFGHLFDNYKYIFEKYPYFWEGLRNSCIWALCGLVIQVPIATGVALVISKKCRGWKLTRNIYVIPNIISSAAMGLIFLQLYNPKYGIINEIIRVFVPNFQDNVLFIPKVNMIALTCAYIFFAGTNMIMVLGQISAIPEEVREAALLDGAKGWTLDRCIVLPLIKDTIKTISILSVSAGFLLYNEVYFLTNGAAGTKSISFLIRELAVVSPRAQYARANAIGAIQILGGLVLILIINMLFRERKQKGGRR
>NZ_CP043051.1|WP_101870972.1|3345049_3345832_-|carbohydrate-ABC-transporter-permease
MILVCFISLFPVIWVAISSLKADPLAEPGFTLPSALCFDGYIGVFRDMHIMRYFFNSFKVAGISVVLSIIMISMSAYVVARMNFKFKSVVSVMLMSTLFIPPTAMTFPVYNLINSMGINDTHAGLILIYTCSGIAVSFMVIKNYFLTIPVELEEAARIDGCGYTQTFFKIMLPIARPGILTAAMLAFMNYWNEYYWASMVLTTKELKTVPAILAQFQNAFSTNYNGMFSAIVVILLPPVILFCCFSKYFIEALSGGAVKG
>NZ_CP043051.1|WP_004844756.1|3358318_3358642_-|ribosomal-L7Ae/L30e/S12e/Gadd45-family-protein
MKQDRVLSLIGLATKAGKCASGEFMTENETKSGKAALVIVAEDASDNTKKKFRDMCKFYEVPIYFYGDKDTLGHAMGKEFRASLAILDEGFAKGIRKQLEIKNNTIA
>NZ_CP043051.1|WP_022037037.1|3358628_3358907_-|YlxR-family-protein
MNGKKKIPMRKCVGCGEMKAKKELLRVLRTEDDEFVLDTTGRKNGRGAYVCLSSECFAKAAKNKGLERSFKQAIPKEVYERLEKEMEQFEAR
>NZ_CP043051.1|WP_004844754.1|3358929_3360123_-|transcription-termination/antitermination-protein-NusA
MNTELMEALTILEKEKNISRDTMMDAIENSLISACKNHFGTSDNIKVIMNRETCDYAVYAEKEVVEEVFDPAIEITLEDAEEIDSALQIGDVCQVPVQSKEFGRIATMNAKNLILQKIREEERKVVYDQYFEKEKDIVTGIVQRYVGKNISVNLGKADAMLTENEQVKGEVFKPTDRIKLYIVEVKNTPKGPKILVSRTHPELVKRLFEAEVAEVKDGTVEIKSIAREAGSRTKMAVWSNDENVDPVGACVGMNGARVNAVVEELRGEKIDIINWSDNPALLIENALSPAKVISVMADPDEKVASVIVPDYQLSLAIGKEGQNARLAARLTGYKIDIKSETQAIESGELPEDYMDQMNMMEEDGYAEDYEETVNYTDGYPEDADAYEEIEFVEAEEE
>NZ_CP043051.1|WP_004844753.1|3360142_3360610_-|ribosome-maturation-factor-RimP
MSRREEYEKQTEELLEPIVAEQGFELVDVEYVKEAGNWYLRAYIDKPGGITVDDCEVVSRRFSDILDEKDYIEDSYIFEVSSPGLGRPLKKEKDFIRSVGQEVEIRTYRAINRQKEFVGILKEFDQNTVTISYEDDSTQTFEKSEIALIRLALDF
>NZ_CP043051.1|WP_004844752.1|3361015_3363259_-|DNA-topoisomerase-4-subunit-A
MSSESQIIRTEYSDVMRKSYIDYAMSVIISRALPDVRDGLKPVQRRTLYDMYELGIRYDKPYRKCARIVGDTMGKYHPHGDSSIYESLVVMAQEFKKGMVLVDGHGNFGSIEGDGAAAMRYTEARLTKFTQEAYLADLDKDIIDFGPNFDETEKEPLVLPVRVPNLLINGAEGIAVGMATSIPTHNLGEVIDAVKAYMKNDAITTKQLMKYIKGPDFPTGGIVVNKDDLPEIYETGQGKIKIRGKVEVEDLKGGKKQLVITEIPYTMIGAGIGKFLNDVCNLVETKKTTDIVDISNQSSKEGIRIVLELKKGADVENLKNMLYKKTRLEDTFGVNMLAVANGRPETLGLKAIIEHHVDFQFELTTRKYKTLLAKELDKKEVQEGLIKACDVIDLIIEILRGSKSVKDAKACLTQGITENIKFKSQISKKMAAMLRFTERQASAILEMRLYKLIGLEIEALQKEHETTLKNIARYEDILNHYDSMATLIMEELDAFKKEYGRKRRTAIENAEAAVFEEKKVEEQEVIFLMDRFGYAKTVDVSVYERNKEAADSENKYVVNCLNTGKICLFTDTGKMHQIKVMDLPYGRFRDKGVPIDNVSNYSSSEEQIVTICDAQQIAFEKLLFATKQGMIKRVDGSEFQVAKRTIAATKLQEEDALIHVGMVQENQNIVLQTRDGYFLRFLTAEIPEKKKGAVGVRGIKLQKTDELEQIHLFEEGTDTKVKYGEKEVTLNRLKLAKRDGVGTKQRK
>NZ_CP043051.1|WP_009244315.1|3363288_3365211_-|DNA-gyrase-subunit-B
MGKSNTYDADSISVLEGLEAVRKRPGMYIGSVSTKGLNHLIYEIVDNAVDEHLAGFCKNIHVTLEKDGSATVEDDGRGVPVGMHQKGISAARLVYTTLHAGGKFDDSAYKTSGGLHGVGSSVVNALSVYMDVQISREGYIHHDRYERGVPVVELEDGLLPTIGKTRKTGTKVNFLPDDTIFEKTKFRAEEVKSRLHETAYLNPELTIVFDDKRPDSQEHIEYHEPDGILGFIRDLNQKKEVLHDPIYFKGTAEGIEVEAAFQYVNEFHENVLGFCNNIYNAEGGTHLTGFKTTFTTVMNQYARELGILKEKDSNFTGADIRNGMTAIISIKHPDPRFEGQTKTKLDNPDAAKATGKVTGDEIVLYFDRNVETLKKVLSCAEKAAKIRKTEEKAKTNLLTKQKYSFDSNGKLANCESRDAKKCEIFIVEGDSAGGSAKTARNRNYQAILPIRGKILNVEKASIDKVLANAEIKTMINAFGCGFSEGYGNDFDITKLRYDKIIIMADADVDGAHISTLLLTLFYRFMPELIYEGHVYIAMPPLYKVMPKKGEEEYLYDDKALEKYRRTHDGGFTLQRYKGLGEMDADQLWETTLNPETRILKLVEIEDARMASGVTEMLMGTEVPPRRAFIYENATEAELDI
>NZ_CP043051.1|WP_039960202.1|3365308_3366478_-|stage-II-sporulation-protein-P
MKREQSRAWMLMAVLVLLAALIGGKEFWRAFRYESRQVLQEYTEKMYMPGVAYQRADETRSSKDWFREKALSWLPLVKYVSDRENLEQEVEDEETLAKILEKQANDESVVDADGNLVGESKTAEVPANLGENKSSIDMSIERLRDFDYLLSNFYTVDSSTMIGPEQLNADDLLGRSMKIDRKQKGPKILIFHTHSQEEFADSIPGDPSTSIVGIGDYLTELLNQKGIETIHDKGVYDIINGQLDRSNAYEYAEAGVRPILEANPTIEVAIDLHRDGVAEGTHLVTEVNGKPTAKIMYFNGLSRTRANGDITYLPNPYIQDNLAFSLQMELASERMFPGFARHIYLRAYRYNLHLLPKSLLIEAGAQTNTVQEMKNAMEVLAETLCQVIG
>NZ_CP043051.1|WP_004844749.1|3366547_3367525_-|GPR-endopeptidase
MLEKYSVRTDLALEEKERFESDHVEIQGVILEEDYDKEKEIRITRVKIETEKGAKAMGKPVGTYITLEAPNMAVPDTDYHREVSEKIAGFVQELLKAQNVKTEELSVLIVGLGNRQVTPDALGPYVTDNLCATRHIVKEYGKYAMGMQHVNLVSTLAPGVMGQTGMETVEVVRGVVKETKPDLVIAVDALAARNSRRLNRTIQIADTGIHPGSGVGNHRNGITRESIGVPVIGIGVPTVVDAATIVNDTMENLILALESSEALKSVGEVLRSYNAAEKYELIKELIAPHLNGMFVTPKDVDEMVKQISYTISEGLNLLFSNAEES
>NZ_CP043051.1|WP_009244317.1|3367714_3367978_+|30S-ribosomal-protein-S20
MANIKSAKKRILVNETKAAKNKAIKSRVKTSVKKVEAAVAQKDMEAAKTALKAAIGEISKAGSKGVYHKKTVSRKISRLTKAVNGIA
>NZ_CP043051.1|WP_039960195.1|3368067_3368709_-|orotate-phosphoribosyltransferase
MTEEFVNLRSRKNPKARIKLMGGHFATMNSHVNTYIDMSTVKTRHNNARETAATLAEEYKTDTMVETIVCLKNTEVIGAFMAEHLADTGRISMSAGNNISVVTPEFDTMGQILFRDSNQRMIEGKQVLILTDSVTTGALLAKAVEAVLYYGGRVCGICAVFSAVNRAAGMDVRSIFTVSDLPDYKGYAAKDCPLCREGQKLDGIVNTFGLVKF

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NZ_CP043051_2	2.1\|2292667\|38\|NZ_CP043051\|PILER-CR,CRISPRCasFinder,CRT	2292667-2292704	38	NZ_CP043051.1	2235079-2235116	0	1.0
NZ_CP043051_2	2.14\|2293532\|35\|NZ_CP043051\|PILER-CR,CRISPRCasFinder,CRT	2293532-2293566	35	NZ_CP043051.1	2229347-2229381	0	1.0
NZ_CP043051_2	2.15\|2293599\|37\|NZ_CP043051\|PILER-CR,CRISPRCasFinder,CRT	2293599-2293635	37	NZ_CP043051.1	2239569-2239605	1	0.973
NZ_CP043051_2	2.24\|2294193\|33\|NZ_CP043051\|PILER-CR,CRISPRCasFinder,CRT	2294193-2294225	33	NZ_CP043051.1	2246899-2246931	2	0.939

1. spacer 2.1|2292667|38|NZ_CP043051|PILER-CR,CRISPRCasFinder,CRT matches to position: 2235079-2235116, mismatch: 0, identity: 1.0

atcatttgcaatcaaatcacagacggagcaggcggcaa	CRISPR spacer
atcatttgcaatcaaatcacagacggagcaggcggcaa	Protospacer
**************************************

2. spacer 2.14|2293532|35|NZ_CP043051|PILER-CR,CRISPRCasFinder,CRT matches to position: 2229347-2229381, mismatch: 0, identity: 1.0

attccacggtacagcttgtttttgagtttcggaag	CRISPR spacer
attccacggtacagcttgtttttgagtttcggaag	Protospacer
***********************************

3. spacer 2.15|2293599|37|NZ_CP043051|PILER-CR,CRISPRCasFinder,CRT matches to position: 2239569-2239605, mismatch: 1, identity: 0.973

cccatcccgtgtgtttagggatcaggtcgggaaaaac	CRISPR spacer
cccatcccgtgtatttagggatcaggtcgggaaaaac	Protospacer
************.************************

4. spacer 2.24|2294193|33|NZ_CP043051|PILER-CR,CRISPRCasFinder,CRT matches to position: 2246899-2246931, mismatch: 2, identity: 0.939

aagttccggttgccagaagggatgatcctgaca	CRISPR spacer
aaattccggctgccagaagggatgatcctgaca	Protospacer
**.******.***********************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP043051_2	2.11\|2293331\|35\|NZ_CP043051\|PILER-CR,CRISPRCasFinder,CRT	2293331-2293365	35	MN582082	Podoviridae sp. ctrTa16, complete genome	13844-13878	9	0.743
NZ_CP043051_2	2.26\|2294326\|34\|NZ_CP043051\|PILER-CR,CRISPRCasFinder,CRT	2294326-2294359	34	NC_016585	Azospirillum lipoferum 4B plasmid AZO_p1, complete sequence	627879-627912	11	0.676

1. spacer 2.11|2293331|35|NZ_CP043051|PILER-CR,CRISPRCasFinder,CRT matches to MN582082 (Podoviridae sp. ctrTa16, complete genome) position: , mismatch: 9, identity: 0.743

agaacttaatcaaaaagaaaggagtgattgatacg	CRISPR spacer
ctactgaaatcaaaaagaaaggagtgtttgaaaca	Protospacer
  * .  ******************* **** **.

2. spacer 2.26|2294326|34|NZ_CP043051|PILER-CR,CRISPRCasFinder,CRT matches to NC_016585 (Azospirillum lipoferum 4B plasmid AZO_p1, complete sequence) position: , mismatch: 11, identity: 0.676

cagtccataagcgcaagctccggatactcttcca	CRISPR spacer
acggtggcgagcgccagctccggatactcgtccg	Protospacer
  * . ...***** ************** ***.

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

323491 : 377362

Faecalibacterium_phage(75.0%)

plate,terminase,portal,protease,transposase,head,tail

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004841879.1\|323491_324577_+\|transposase	transposase	NA	NA	NA	NA
WP_004841880.1\|324591_325773_-	amino acid permease	NA	NA	NA	NA
WP_004841882.1\|326175_327702_+	FGGY-family carbohydrate kinase	NA	NA	NA	NA
WP_004841885.1\|327872_328607_-	GntR family transcriptional regulator	NA	NA	NA	NA
WP_004841887.1\|328649_329375_-	GntR family transcriptional regulator	NA	NA	NA	NA
WP_004841888.1\|329452_330847_-	MATE family efflux transporter	NA	NA	NA	NA
WP_101884892.1\|330984_331827_+	TIM barrel protein	NA	NA	NA	NA
WP_004841892.1\|331909_332740_-	fructoselysine 3-epimerase	NA	NA	NA	NA
WP_004841895.1\|332855_333659_-	Cof-type HAD-IIB family hydrolase	NA	NA	NA	NA
WP_004841899.1\|334127_335663_+	Na+/H+ antiporter NhaC family protein	NA	NA	NA	NA
WP_039959509.1\|335964_337434_-	ABC-F type ribosomal protection protein	A0A1V0SKJ1	Klosneuvirus	2.9e-22	22.0
WP_009244858.1\|337741_338089_-	arsenate reductase family protein	M1PLC0	Streptococcus_phage	1.7e-21	47.2
WP_004841909.1\|338162_339533_-	HAMP domain-containing histidine kinase	NA	NA	NA	NA
WP_004841910.1\|339523_340183_-	response regulator transcription factor	NA	NA	NA	NA
WP_009244860.1\|340201_340975_-	lantibiotic immunity ABC transporter MutG family permease subunit	NA	NA	NA	NA
WP_004841915.1\|340962_341742_-	lantibiotic immunity ABC transporter MutE/EpiE family permease subunit	NA	NA	NA	NA
WP_004841916.1\|341748_342441_-	lantibiotic protection ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	2.7e-55	49.3
WP_004841918.1\|342638_343844_+	FprA family A-type flavoprotein	NA	NA	NA	NA
WP_004841920.1\|343873_344359_+	cytidylate kinase-like family protein	NA	NA	NA	NA
WP_105084828.1\|344477_344840_-	hypothetical protein	NA	NA	NA	NA
WP_159308430.1\|344882_345032_-	hypothetical protein	NA	NA	NA	NA
WP_004840241.1\|345284_347270_-	ABC transporter permease	NA	NA	NA	NA
WP_004840239.1\|347672_349313_-	hypothetical protein	H7BV84	unidentified_phage	1.5e-48	39.6
WP_039959152.1\|349370_349625_-	hypothetical protein	NA	NA	NA	NA
WP_039959151.1\|349644_349998_-	hypothetical protein	A0A2K9V2T8	Faecalibacterium_phage	6.5e-29	68.2
WP_004840235.1\|350186_350333_-	XkdX family protein	NA	NA	NA	NA
WP_039959148.1\|350325_350724_-	hypothetical protein	NA	NA	NA	NA
WP_004840233.1\|350683_351829_-	RNA-directed DNA polymerase	H7BVE9	unidentified_phage	5.9e-55	33.3
WP_004840232.1\|352289_354167_-\|tail	phage tail protein	A0A2K9V330	Faecalibacterium_phage	5.7e-31	50.7
WP_039959146.1\|354179_354995_-	hypothetical protein	A0A2K9V337	Faecalibacterium_phage	8.0e-30	41.3
WP_004840230.1\|354987_356130_-\|plate	baseplate J/gp47 family protein	A0A2K9V320	Faecalibacterium_phage	2.1e-100	47.4
WP_004840229.1\|356131_356443_-	hypothetical protein	NA	NA	NA	NA
WP_004840228.1\|356456_356852_-\|tail	phage tail protein	A0A2K9V364	Faecalibacterium_phage	4.3e-21	39.8
WP_004840227.1\|356864_357263_-	hypothetical protein	NA	NA	NA	NA
WP_004840226.1\|357280_358573_-	hypothetical protein	A0A2K9V340	Faecalibacterium_phage	4.6e-64	38.3
WP_004840225.1\|358565_358826_-\|tail	tail protein X	A0A0C5AEF4	Bacteriophage	5.0e-10	45.3
WP_004840224.1\|358842_363342_-\|tail	phage tail tape measure protein	A0A2K9V313	Faecalibacterium_phage	4.4e-05	41.9
WP_004840222.1\|363487_363826_-	hypothetical protein	A0A2K9V324	Faecalibacterium_phage	1.8e-20	52.0
WP_004840221.1\|363843_364368_-\|tail	phage major tail tube protein	A0A2K9V323	Faecalibacterium_phage	4.6e-31	43.1
WP_004840220.1\|364370_365819_-\|tail	phage tail sheath family protein	A0A2K9V328	Faecalibacterium_phage	1.2e-137	49.9
WP_004840219.1\|365822_366131_-	hypothetical protein	NA	NA	NA	NA
WP_004840218.1\|366105_366603_-	hypothetical protein	A0A2K9V310	Faecalibacterium_phage	2.1e-09	27.2
WP_004840217.1\|366606_367173_-\|tail	phage tail protein	A0A2K9V354	Faecalibacterium_phage	7.0e-17	36.2
WP_004840216.1\|367169_367493_-	hypothetical protein	A0A2K9V315	Faecalibacterium_phage	1.4e-22	50.5
WP_004840215.1\|367489_367798_-	hypothetical protein	NA	NA	NA	NA
WP_004840214.1\|367794_368124_-	DUF2190 family protein	A0A2K9V343	Faecalibacterium_phage	4.8e-18	45.0
WP_004840213.1\|368143_369715_-	hypothetical protein	A0A2K9V304	Faecalibacterium_phage	9.6e-165	58.3
WP_081448173.1\|369711_370359_-\|head,protease	HK97 family phage prohead protease	A0A2K9V308	Faecalibacterium_phage	2.5e-55	60.3
WP_105084790.1\|370294_371842_-\|portal	phage portal protein	A0A2K9V303	Faecalibacterium_phage	3.3e-186	63.4
WP_105084829.1\|371847_372069_-	peptidylprolyl isomerase	A0A2K9V311	Faecalibacterium_phage	2.5e-15	63.6
WP_004840209.1\|372089_373931_-\|terminase	phage terminase large subunit family protein	A0A2K9V301	Faecalibacterium_phage	7.4e-201	60.0
WP_004840208.1\|373945_374488_-	hypothetical protein	A0A2K9V441	Faecalibacterium_phage	5.3e-06	26.8
WP_004840207.1\|374478_374718_-	hypothetical protein	NA	NA	NA	NA
WP_131588770.1\|374833_375121_-	hypothetical protein	NA	NA	NA	NA
WP_004840205.1\|375229_375895_-	hypothetical protein	A0A2K9V317	Faecalibacterium_phage	3.0e-19	38.9
WP_131588769.1\|375900_376152_-	hypothetical protein	NA	NA	NA	NA
WP_004840203.1\|376244_376910_-	DUF2226 domain-containing protein	NA	NA	NA	NA
WP_039959137.1\|376933_377362_-	single-stranded DNA-binding protein	A0A2H4J8K2	uncultured_Caudovirales_phage	1.0e-28	56.6

DBSCAN-SWA_2

737642 : 803527

Indivirus(50.0%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_009245178.1\|737642_738032_-\|transposase	transposase	A0A1V0SCG6	Indivirus	2.0e-10	29.0
WP_009245180.1\|738169_738574_-	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_004842341.1\|738984_740313_-	RNA polymerase factor sigma-54	NA	NA	NA	NA
WP_023924019.1\|740328_742989_-	sigma 54-interacting transcriptional regulator	NA	NA	NA	NA
WP_004842328.1\|744323_745442_-	DUF2961 domain-containing protein	NA	NA	NA	NA
WP_004842326.1\|745425_747600_-	hypothetical protein	NA	NA	NA	NA
WP_004842325.1\|747616_748441_-	PTS system mannose/fructose/sorbose family transporter subunit IID	NA	NA	NA	NA
WP_172624260.1\|748437_749232_-	PTS sugar transporter subunit IIC	NA	NA	NA	NA
WP_004842320.1\|749263_749749_-	PTS sugar transporter subunit IIB	NA	NA	NA	NA
WP_009245182.1\|750025_750451_-	PTS fructose transporter subunit IIA	NA	NA	NA	NA
WP_004842314.1\|750783_751599_+	hypothetical protein	NA	NA	NA	NA
WP_004842311.1\|751592_752549_-	U32 family peptidase	NA	NA	NA	NA
WP_004842310.1\|752565_753906_-	hypothetical protein	NA	NA	NA	NA
WP_009245184.1\|754136_755219_+	dihydrodipicolinate reductase	NA	NA	NA	NA
WP_004842306.1\|755221_756136_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_022037539.1\|756260_757697_+	aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA
WP_004842302.1\|757750_759289_-	asparagine synthase (glutamine-hydrolyzing)	NA	NA	NA	NA
WP_004842300.1\|759524_759941_-	hypothetical protein	NA	NA	NA	NA
WP_004842298.1\|759925_761158_-	SEC-C domain-containing protein	NA	NA	NA	NA
WP_004842296.1\|761159_762479_-	DUF2399 domain-containing protein	NA	NA	NA	NA
WP_004842295.1\|762475_766567_-	TIGR02680 family protein	NA	NA	NA	NA
WP_004842293.1\|766559_767705_-	TIGR02678 family protein	NA	NA	NA	NA
WP_039959623.1\|767701_769192_-	TIGR02677 family protein	NA	NA	NA	NA
WP_159308433.1\|769477_769627_-	hypothetical protein	NA	NA	NA	NA
WP_148844599.1\|769873_770959_+\|transposase	transposase	NA	NA	NA	NA
WP_004842282.1\|770973_771177_-	hypothetical protein	NA	NA	NA	NA
WP_004842280.1\|771191_772931_-	ATP-binding protein	NA	NA	NA	NA
WP_004842276.1\|773327_774263_+	response regulator transcription factor	W8CYM9	Bacillus_phage	5.0e-28	34.1
WP_004842274.1\|774249_775302_+	sensor histidine kinase	NA	NA	NA	NA
WP_039959593.1\|775387_775720_+	hypothetical protein	NA	NA	NA	NA
WP_105084794.1\|775866_776943_+	iron-containing alcohol dehydrogenase	NA	NA	NA	NA
WP_039959622.1\|776872_777871_+	aldehyde dehydrogenase family protein	NA	NA	NA	NA
WP_009245200.1\|777851_778928_-	hypothetical protein	NA	NA	NA	NA
WP_004842266.1\|779207_780848_-	hydroxylamine reductase	NA	NA	NA	NA
WP_009242442.1\|781151_781484_-	cupin domain-containing protein	NA	NA	NA	NA
WP_004842261.1\|781497_782208_-	4Fe-4S binding protein	NA	NA	NA	NA
WP_004842258.1\|782299_782947_+	Crp/Fnr family transcriptional regulator	NA	NA	NA	NA
WP_004842257.1\|783413_783740_-\|transposase	transposase	NA	NA	NA	NA
WP_148844601.1\|783748_784048_-\|transposase	transposase	NA	NA	NA	NA
WP_004614566.1\|784053_784563_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_004842253.1\|784824_785556_-	hypothetical protein	NA	NA	NA	NA
WP_004842252.1\|785540_786422_-	class C sortase	NA	NA	NA	NA
WP_004842250.1\|786519_788130_-	SpaH/EbpB family LPXTG-anchored major pilin	NA	NA	NA	NA
WP_039959587.1\|788161_796285_-	Cna B-type domain-containing protein	NA	NA	NA	NA
WP_004842246.1\|796438_797899_-	Rrf2 family transcriptional regulator	NA	NA	NA	NA
WP_004842245.1\|798030_798351_-	LPXTG cell wall anchor domain-containing protein	NA	NA	NA	NA
WP_004842240.1\|800024_801110_+\|transposase	transposase	NA	NA	NA	NA
WP_004842238.1\|801134_801692_-	PucR family transcriptional regulator ligand-binding domain-containing protein	NA	NA	NA	NA
WP_009246078.1\|801893_802214_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_039959586.1\|802369_803527_-\|transposase	IS630 family transposase	NA	NA	NA	NA

DBSCAN-SWA_3

2096803 : 2149413

unidentified_phage(28.57%)

capsid,holin,tRNA,terminase,portal,protease,transposase,head,tail

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004843005.1\|2096803_2097985_+\|tRNA	tRNA 4-thiouridine(8) synthase ThiI	NA	NA	NA	NA
WP_004843006.1\|2098037_2098271_-	HPr family phosphocarrier protein	NA	NA	NA	NA
WP_004843007.1\|2098395_2099688_+\|tRNA	tRNA (N(6)-L-threonylcarbamoyladenosine(37)-C(2))- methylthiotransferase MtaB	NA	NA	NA	NA
WP_004843008.1\|2099795_2100059_+	IreB family regulatory phosphoprotein	NA	NA	NA	NA
WP_004843009.1\|2100065_2100512_+	Holliday junction resolvase RuvX	NA	NA	NA	NA
WP_004843010.1\|2100537_2100798_+	DUF1292 domain-containing protein	NA	NA	NA	NA
WP_004843011.1\|2100833_2101316_+	transcriptional repressor	NA	NA	NA	NA
WP_004843012.1\|2101339_2103004_+	ribonuclease J	NA	NA	NA	NA
WP_004843013.1\|2103007_2103661_+	O-methyltransferase	A0A2P1JQT7	Mycobacterium_phage	7.1e-13	32.9
WP_004843014.1\|2103662_2104895_+	U32 family peptidase	Q6DW11	Phage_TP	6.5e-60	38.4
WP_004843016.1\|2104868_2105495_-	RNA polymerase sporulation sigma factor SigK	A0A2H4JC68	uncultured_Caudovirales_phage	1.2e-12	33.3
WP_004843017.1\|2105769_2107293_+	YifB family Mg chelatase-like AAA ATPase	NA	NA	NA	NA
WP_004843018.1\|2107305_2108388_+	DNA-protecting protein DprA	NA	NA	NA	NA
WP_004843019.1\|2108422_2110495_+	type I DNA topoisomerase	A0A1V0SB35	Catovirus	7.8e-98	37.3
WP_003023424.1\|2110686_2110881_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_003023421.1\|2111066_2111294_+	hypothetical protein	NA	NA	NA	NA
WP_003023418.1\|2111526_2111964_+	hypothetical protein	NA	NA	NA	NA
WP_003023416.1\|2111935_2112490_+	hypothetical protein	W8VMA8	Pseudomonas_phage	2.9e-07	30.5
WP_003023414.1\|2112461_2112833_+	hypothetical protein	NA	NA	NA	NA
WP_003023411.1\|2112825_2113167_+	hypothetical protein	NA	NA	NA	NA
WP_003023408.1\|2113179_2113503_+	hypothetical protein	NA	NA	NA	NA
WP_003023406.1\|2113499_2114228_+	single-stranded DNA-binding protein	NA	NA	NA	NA
WP_003023403.1\|2114217_2114472_+	hypothetical protein	NA	NA	NA	NA
WP_002591249.1\|2114461_2114782_+	hypothetical protein	NA	NA	NA	NA
WP_003023400.1\|2114778_2115306_+	hypothetical protein	NA	NA	NA	NA
WP_003023394.1\|2116244_2116418_+	hypothetical protein	NA	NA	NA	NA
WP_003023388.1\|2116633_2117044_+	VRR-NUC domain-containing protein	H7BUL6	unidentified_phage	1.2e-23	50.9
WP_003023383.1\|2117071_2117860_+	ParA family protein	H7BUL8	unidentified_phage	5.3e-47	40.3
WP_003023380.1\|2117865_2118039_+	hypothetical protein	NA	NA	NA	NA
WP_003023376.1\|2118044_2119313_+	DUF3850 domain-containing protein	H7BVD1	unidentified_phage	7.2e-54	33.0
WP_003023374.1\|2119305_2119539_+	hypothetical protein	NA	NA	NA	NA
WP_002591259.1\|2119695_2119974_+	hypothetical protein	NA	NA	NA	NA
WP_002591261.1\|2120054_2120450_+	single-stranded DNA-binding protein	Q9AZV6	Lactococcus_phage	1.6e-15	39.9
WP_003023366.1\|2120470_2121037_+	hypothetical protein	NA	NA	NA	NA
WP_002591263.1\|2121037_2121457_+	hypothetical protein	NA	NA	NA	NA
WP_002591264.1\|2121632_2121932_+	HNH endonuclease	R9TNN2	Paenibacillus_phage	2.1e-20	50.5
WP_003023363.1\|2121977_2122391_+	hypothetical protein	A0A290GJQ7	Caldibacillus_phage	9.3e-11	40.0
WP_003023360.1\|2122397_2124053_+\|terminase	terminase large subunit	H7BUQ3	unidentified_phage	3.2e-203	62.9
WP_003023358.1\|2124070_2125321_+\|portal	phage portal protein	A0A290G4I4	Caldibacillus_phage	2.1e-50	34.7
WP_003023355.1\|2125310_2125910_+\|head,protease	HK97 family phage prohead protease	U5U3W0	Lactobacillus_phage	3.2e-12	30.9
WP_003023352.1\|2125941_2127174_+\|capsid	phage major capsid protein	NA	NA	NA	NA
WP_004843022.1\|2127190_2127805_+	hypothetical protein	NA	NA	NA	NA
WP_003023345.1\|2127822_2128173_+	hypothetical protein	R9TMB7	Paenibacillus_phage	1.2e-11	47.9
WP_003023344.1\|2128187_2128901_+	hypothetical protein	NA	NA	NA	NA
WP_003023341.1\|2128914_2129142_+	hypothetical protein	NA	NA	NA	NA
WP_003023338.1\|2129156_2129480_+	hypothetical protein	NA	NA	NA	NA
WP_003023335.1\|2129482_2129914_+	hypothetical protein	NA	NA	NA	NA
WP_002591274.1\|2129910_2130237_+	hypothetical protein	NA	NA	NA	NA
WP_002591275.1\|2130244_2130808_+\|tail	phage tail protein	A0A2K5B294	Erysipelothrix_phage	2.2e-34	44.4
WP_003023331.1\|2130857_2131262_+	hypothetical protein	U3PCS7	Lactobacillus_phage	1.8e-06	30.0
WP_004843024.1\|2131467_2134599_+	hypothetical protein	A5GYM8	Lactococcus_phage	1.2e-65	65.7
WP_003023324.1\|2134602_2135490_+\|tail	phage tail family protein	E2ELJ6	Clostridium_phage	4.6e-39	33.9
WP_003023321.1\|2135494_2136649_+	siphovirus ReqiPepy6 Gp37-like family protein	NA	NA	NA	NA
WP_003023320.1\|2136654_2137791_+	hypothetical protein	E2ELJ8	Clostridium_phage	3.2e-37	40.0
WP_003023317.1\|2137805_2138243_+	hypothetical protein	NA	NA	NA	NA
WP_004843025.1\|2138235_2139378_+	hypothetical protein	H7BUP0	unidentified_phage	4.0e-104	51.7
WP_003023311.1\|2139418_2139775_+	diversity-generating retroelement protein Avd	H7BUN9	unidentified_phage	5.0e-21	50.9
WP_003023298.1\|2141187_2141367_+	hypothetical protein	NA	NA	NA	NA
WP_003023294.1\|2141363_2141852_+\|holin	phage holin family protein	A0A090D848	Clostridium_phage	1.3e-24	47.9
WP_003023292.1\|2141930_2143340_+	N-acetylmuramoyl-L-alanine amidase	H7BV89	unidentified_phage	2.0e-57	37.4
WP_003023288.1\|2143805_2144003_+	helix-turn-helix transcriptional regulator	U5PVN3	Bacillus_phage	9.5e-06	42.6
WP_003023284.1\|2144800_2145862_+\|transposase	IS30 family transposase	H7BUM7	unidentified_phage	3.5e-110	57.2
WP_004843029.1\|2146131_2146911_+	GTP-sensing pleiotropic transcriptional regulator CodY	NA	NA	NA	NA
WP_004843030.1\|2146993_2147320_+	hypothetical protein	NA	NA	NA	NA
WP_004843031.1\|2147443_2147728_+	co-chaperone GroES	A0A221S4A8	uncultured_virus	2.5e-15	44.7
WP_024853031.1\|2147790_2149413_+	chaperonin GroEL	A0A240F779	uncultured_virus	1.9e-152	52.7

DBSCAN-SWA_4

2214755 : 2266267

Streptococcus_phage(17.86%)

capsid,holin,portal,transposase,tail

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004843112.1\|2214755_2214953_+	helix-turn-helix transcriptional regulator	I3VYZ1	Thermoanaerobacterium_phage	5.6e-06	49.1
WP_004843115.1\|2215256_2215649_-	helix-turn-helix transcriptional regulator	A0A2K9V305	Faecalibacterium_phage	5.9e-15	39.2
WP_039959728.1\|2215818_2216094_+	hypothetical protein	NA	NA	NA	NA
WP_004843117.1\|2216112_2216469_+	hypothetical protein	NA	NA	NA	NA
WP_039959730.1\|2216438_2216666_-	hypothetical protein	NA	NA	NA	NA
WP_004843118.1\|2216792_2217566_+	phage antirepressor KilAC domain-containing protein	A0A2P0VK28	Streptococcus_phage	2.8e-56	45.7
WP_004843119.1\|2217576_2217735_+	hypothetical protein	NA	NA	NA	NA
WP_004843123.1\|2217923_2218109_+	hypothetical protein	NA	NA	NA	NA
WP_004843125.1\|2218098_2218287_+	hypothetical protein	NA	NA	NA	NA
WP_004843126.1\|2218373_2219030_+	hypothetical protein	K4JTL7	Streptococcus_phage	2.6e-07	55.8
WP_004843127.1\|2219041_2219305_+	hypothetical protein	NA	NA	NA	NA
WP_004843129.1\|2219430_2219895_+	siphovirus Gp157 family protein	NA	NA	NA	NA
WP_004843130.1\|2219904_2220447_+	hypothetical protein	A0A0E3Y6D2	Fusobacterium_phage	1.1e-51	71.2
WP_004843131.1\|2220443_2220983_+	hypothetical protein	A0A2H4J4U8	uncultured_Caudovirales_phage	9.6e-24	39.9
WP_105084848.1\|2221096_2221360_+	phosphoenolpyruvate carboxykinase	NA	NA	NA	NA
WP_004843133.1\|2221473_2221884_+	RusA family crossover junction endodeoxyribonuclease	A0A0A8WIA1	Clostridium_phage	1.9e-19	40.2
WP_004843134.1\|2221883_2222705_+	phage replisome organizer N-terminal domain-containing protein	A0A0A7RTL4	Clostridium_phage	9.8e-36	42.0
WP_004843135.1\|2222709_2222892_+	hypothetical protein	NA	NA	NA	NA
WP_004843136.1\|2222869_2223316_+	hypothetical protein	A0A1B1P7V7	Bacillus_phage	5.7e-06	37.8
WP_004843137.1\|2223315_2223504_+	hypothetical protein	NA	NA	NA	NA
WP_004843138.1\|2223500_2223701_+	Lar family restriction alleviation protein	NA	NA	NA	NA
WP_004843139.1\|2223702_2223894_+	hypothetical protein	NA	NA	NA	NA
WP_105084813.1\|2223899_2224490_+	hypothetical protein	NA	NA	NA	NA
WP_004843141.1\|2224486_2224711_+	hypothetical protein	NA	NA	NA	NA
WP_039959732.1\|2224712_2225126_+	hypothetical protein	NA	NA	NA	NA
WP_039959733.1\|2225702_2226341_+	DUF4417 domain-containing protein	H7BVQ9	unidentified_phage	5.4e-66	57.6
WP_004843145.1\|2226330_2226693_+	hypothetical protein	NA	NA	NA	NA
WP_039959750.1\|2226710_2227208_+	helix-turn-helix domain-containing protein	A0A0A7RTX1	Clostridium_phage	6.1e-33	49.3
WP_004843147.1\|2227182_2228511_+\|portal	phage portal protein	A0A2K9V3G6	Faecalibacterium_phage	8.1e-56	34.5
WP_004843148.1\|2228503_2229856_+	hypothetical protein	A0A1J1JA89	Escherichia_phage	4.5e-62	33.3
WP_039959751.1\|2229865_2231059_+\|capsid	phage minor capsid protein	A0A1J1J8Z3	Escherichia_phage	1.1e-48	34.7
WP_004843150.1\|2231055_2231337_+	hypothetical protein	NA	NA	NA	NA
WP_004843151.1\|2231321_2232830_+	hypothetical protein	NA	NA	NA	NA
WP_004843152.1\|2232831_2233119_+	hypothetical protein	NA	NA	NA	NA
WP_039959735.1\|2233474_2234026_+	phage scaffolding protein	Q9T1B8	Listeria_phage	6.2e-18	35.2
WP_004843155.1\|2234051_2234909_+	hypothetical protein	A0A1S5SAC9	Streptococcus_phage	1.5e-26	31.6
WP_004843156.1\|2234921_2235302_+	hypothetical protein	A0A0A8WEA0	Clostridium_phage	5.2e-08	34.7
WP_004843157.1\|2235298_2235634_+	hypothetical protein	NA	NA	NA	NA
WP_004843158.1\|2235633_2236023_+	hypothetical protein	NA	NA	NA	NA
WP_004843159.1\|2236006_2236426_+	hypothetical protein	A0A1J1J8Y6	Escherichia_phage	2.7e-21	34.1
WP_004843160.1\|2236428_2236956_+	hypothetical protein	NA	NA	NA	NA
WP_039959738.1\|2236976_2237339_+	hypothetical protein	NA	NA	NA	NA
WP_004843162.1\|2237335_2237890_+	hypothetical protein	NA	NA	NA	NA
WP_004843164.1\|2238096_2239953_+	tape measure protein	A0A2K9V3J7	Faecalibacterium_phage	5.6e-47	47.0
WP_004843165.1\|2239949_2241419_+\|tail	phage tail family protein	Q8LTK1	Lactococcus_phage	7.6e-55	28.7
WP_004843166.1\|2241418_2243920_+\|tail	phage tail protein	Q2I7P5	Streptococcus_phage	2.5e-82	36.2
WP_105084849.1\|2243953_2244274_+	hypothetical protein	NA	NA	NA	NA
WP_105084814.1\|2244287_2244536_+\|holin	phage holin	J7KDR1	Streptococcus_phage	1.2e-21	64.1
WP_004844723.1\|2244688_2245426_+	N-acetylmuramoyl-L-alanine amidase	Q09WT3	Lactococcus_virus	2.7e-53	45.1
WP_101884753.1\|2245746_2246190_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_004844721.1\|2246268_2246694_-	hypothetical protein	NA	NA	NA	NA
WP_105084815.1\|2246820_2247000_+	hypothetical protein	NA	NA	NA	NA
WP_004844719.1\|2247010_2247277_-	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_004844718.1\|2247388_2248531_-	hypothetical protein	NA	NA	NA	NA
WP_004844716.1\|2248977_2249703_+	phosphatase	NA	NA	NA	NA
WP_004844715.1\|2249825_2250113_+	TrpR YerC/YecD	NA	NA	NA	NA
WP_004844714.1\|2250159_2250777_-	DUF1836 domain-containing protein	NA	NA	NA	NA
WP_004844713.1\|2250893_2251241_+	hypothetical protein	NA	NA	NA	NA
WP_004844712.1\|2251369_2253604_+	DNA helicase PcrA	A7KV33	Bacillus_phage	1.4e-129	41.5
WP_004844711.1\|2253707_2253947_+	hypothetical protein	NA	NA	NA	NA
WP_004844709.1\|2254058_2255738_+	23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	A0A2K5B251	Erysipelothrix_phage	1.3e-55	32.3
WP_004844708.1\|2255978_2256587_+	type IV toxin-antitoxin system AbiEi family antitoxin domain-containing protein	NA	NA	NA	NA
WP_004844707.1\|2256586_2257519_+	nucleotidyl transferase AbiEii/AbiGii toxin family protein	NA	NA	NA	NA
WP_004844705.1\|2258340_2259012_+	ATP-binding cassette domain-containing protein	A0A2H4PQG7	Staphylococcus_phage	1.8e-11	29.0
WP_004844704.1\|2259004_2260204_+	ABC transporter ATP-binding protein	NA	NA	NA	NA
WP_004844586.1\|2260140_2261649_+	MarR family transcriptional regulator	NA	NA	NA	NA
WP_004844702.1\|2261723_2262377_+	ATP-binding cassette domain-containing protein	F2Y302	Organic_Lake_phycodnavirus	1.0e-11	31.1
WP_004844700.1\|2263471_2264113_+	ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	2.6e-28	35.4
WP_004844699.1\|2264126_2264684_+	hypothetical protein	NA	NA	NA	NA
WP_004844698.1\|2264706_2265276_+	hypothetical protein	NA	NA	NA	NA
WP_004844697.1\|2265275_2265512_+	hypothetical protein	NA	NA	NA	NA
WP_114149247.1\|2265595_2266267_-\|transposase	IS630 family transposase	NA	NA	NA	NA

DBSCAN-SWA_5

2490570 : 2515178

Streptococcus_phage(72.22%)

integrase

attL 2492899:2492914|attR 2500913:2500928

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004844483.1\|2490570_2492397_+	glutamine--fructose-6-phosphate transaminase (isomerizing)	Q84421	Paramecium_bursaria_Chlorella_virus	2.2e-104	37.6
WP_004844482.1\|2492497_2493799_+	trypsin-like peptidase domain-containing protein	W5SAB9	Pithovirus	8.0e-08	33.7
2492899:2492914	attL	NA	NA	NA	NA
WP_004843378.1\|2494272_2495463_-\|integrase	site-specific integrase	A0A1S5SEW7	Streptococcus_phage	1.4e-155	67.0
WP_004613735.1\|2495541_2495745_-	excisionase	A0A1S5SF07	Streptococcus_phage	2.5e-25	82.1
WP_002322727.1\|2496116_2496371_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_003061815.1\|2496374_2496794_-	sigma-70 family RNA polymerase sigma factor	A0A1S5SEW0	Streptococcus_phage	6.7e-25	41.6
WP_004843374.1\|2497189_2497855_+	response regulator transcription factor	W8CYM9	Bacillus_phage	1.3e-25	31.9
WP_004843373.1\|2497910_2498828_+	ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	1.6e-42	47.8
WP_004843372.1\|2498820_2499642_+	ABC transporter permease	NA	NA	NA	NA
WP_004843371.1\|2499668_2500547_+	HAMP domain-containing histidine kinase	W8CYF6	Bacillus_phage	6.0e-15	25.5
WP_015530300.1\|2500581_2500944_-	hypothetical protein	NA	NA	NA	NA
2500913:2500928	attR	NA	NA	NA	NA
WP_004843369.1\|2500963_2501188_-	hypothetical protein	NA	NA	NA	NA
WP_004843367.1\|2501336_2501699_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_004843366.1\|2501754_2502666_-	conjugal transfer protein	A0A1S5SF22	Streptococcus_phage	5.3e-83	53.0
WP_004843365.1\|2502682_2503690_-	lysozyme family protein	A0A1S5SEZ8	Streptococcus_phage	9.2e-137	70.8
WP_004843364.1\|2503686_2505888_-	MFS transporter	A0A1S5SF30	Streptococcus_phage	5.6e-187	60.4
WP_004843363.1\|2505887_2508338_-	ATP-binding protein	A0A1S5SF64	Streptococcus_phage	0.0e+00	76.2
WP_004843362.1\|2508315_2508714_-	conjugal transfer protein	A0A1S5SEX7	Streptococcus_phage	3.2e-48	73.0
WP_004843360.1\|2508830_2509334_-	antirestriction protein ArdA	A0A1S5SF25	Streptococcus_phage	2.9e-54	60.2
WP_004843359.1\|2509351_2509855_-	antirestriction protein ArdA	NA	NA	NA	NA
WP_004843358.1\|2509773_2510070_-	hypothetical protein	NA	NA	NA	NA
WP_004843356.1\|2510157_2510466_-	hypothetical protein	NA	NA	NA	NA
WP_004843355.1\|2510539_2510761_-	hypothetical protein	A0A1S5SEY0	Streptococcus_phage	4.5e-28	86.3
WP_004843354.1\|2510762_2510897_-	DUF3789 domain-containing protein	NA	NA	NA	NA
WP_004843353.1\|2510909_2512106_-	replication initiation factor domain-containing protein	A0A1S5SEX3	Streptococcus_phage	1.9e-149	62.8
WP_004843352.1\|2512255_2512645_-	hypothetical protein	NA	NA	NA	NA
WP_004843351.1\|2512739_2514131_-	cell division protein FtsK	A0A1S5SFB5	Streptococcus_phage	1.7e-173	66.0
WP_004843350.1\|2514222_2514708_-	hypothetical protein	NA	NA	NA	NA
WP_004843349.1\|2514794_2515178_-	YdcP family protein	A0A1S5SF96	Streptococcus_phage	2.3e-32	55.9

DBSCAN-SWA_6

2573089 : 2607832

Streptococcus_phage(36.67%)

capsid,terminase,portal,protease,transposase,head,tail

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004843289.1\|2573089_2573491_+	DUF4406 domain-containing protein	A0A2K9V2W4	Faecalibacterium_phage	5.9e-18	39.8
WP_004843288.1\|2573501_2573693_+	hypothetical protein	NA	NA	NA	NA
WP_004843287.1\|2573689_2574049_+	hypothetical protein	NA	NA	NA	NA
WP_004843286.1\|2574048_2575176_+	DUF2800 domain-containing protein	A0A2K5B2A8	Erysipelothrix_phage	1.5e-95	48.4
WP_004843285.1\|2575179_2575722_+	DUF2815 family protein	A0A0A7RVM4	Clostridium_phage	2.2e-60	68.3
WP_004843284.1\|2575792_2575963_+	hypothetical protein	NA	NA	NA	NA
WP_004843283.1\|2575943_2577878_+	DNA polymerase	A0A0A7RTL3	Clostridium_phage	7.1e-202	53.8
WP_004843282.1\|2577887_2578034_+	hypothetical protein	NA	NA	NA	NA
WP_004843281.1\|2578017_2580375_+	hypothetical protein	A0A1W6JQ82	Corynebacterium_phage	3.3e-225	50.6
WP_004843280.1\|2580592_2580874_+	VRR-NUC domain-containing protein	A0A2K5B272	Erysipelothrix_phage	8.5e-24	62.2
WP_004843279.1\|2580854_2582228_+	DEAD/DEAH box helicase	A0A2K5B273	Erysipelothrix_phage	4.2e-148	64.7
WP_004843278.1\|2582211_2582682_+	hypothetical protein	M1PSN8	Streptococcus_phage	2.5e-12	29.5
WP_004843277.1\|2582691_2583048_+	type II toxin-antitoxin system PemK/MazF family toxin	Q332J9	Clostridium_botulinum_C_phage	1.2e-09	31.7
WP_004843276.1\|2583129_2584524_+	hypothetical protein	NA	NA	NA	NA
WP_004843274.1\|2584693_2585047_+	HNH endonuclease	M1PLL8	Streptococcus_phage	3.9e-34	55.5
WP_004843272.1\|2585309_2585765_+	hypothetical protein	NA	NA	NA	NA
WP_004843271.1\|2585745_2587002_+	DNA modification methylase	Q6DMV0	Streptococcus_phage	5.3e-182	75.6
WP_004843270.1\|2586979_2588248_+	DNA (cytosine-5-)-methyltransferase	M1NSK8	Streptococcus_phage	1.6e-154	62.1
WP_004843269.1\|2588312_2589140_+	hypothetical protein	A0A2K5B280	Erysipelothrix_phage	2.4e-13	26.5
WP_004843268.1\|2589127_2589355_+	DUF4314 domain-containing protein	E4ZFL7	Streptococcus_phage	3.3e-10	42.3
WP_004843267.1\|2589478_2590426_+	amidoligase family protein	A0A1B1IUD7	uncultured_Mediterranean_phage	7.8e-45	37.0
WP_039959824.1\|2590518_2590992_+	gamma-glutamylcyclotransferase	NA	NA	NA	NA
WP_004843265.1\|2590981_2591179_+	hypothetical protein	NA	NA	NA	NA
WP_004843263.1\|2591499_2591937_+\|terminase	phage terminase small subunit P27 family	A0A1X9I6K0	Streptococcus_phage	6.5e-55	74.8
WP_004843262.1\|2591936_2593484_+\|terminase	terminase large subunit	A0A2K5B285	Erysipelothrix_phage	5.6e-234	73.6
WP_004843261.1\|2593570_2593849_+	hypothetical protein	NA	NA	NA	NA
WP_004843260.1\|2593907_2595206_+\|portal	phage portal protein	Q6DMU2	Streptococcus_phage	9.0e-193	77.9
WP_004843259.1\|2595202_2596009_+\|protease	Clp protease ClpP	A0A1X9I749	Streptococcus_phage	4.9e-72	57.6
WP_004843258.1\|2596023_2597229_+\|capsid	phage major capsid protein	A0A2I4R671	Erysipelothrix_phage	2.4e-152	67.2
WP_004843257.1\|2597238_2597514_+\|head,tail	phage gp6-like head-tail connector protein	A0A1B0RXE3	Streptococcus_phage	1.4e-15	49.5
WP_004843256.1\|2597513_2597843_+\|head	phage head closure protein	A0A0A7RUH8	Clostridium_phage	1.0e-15	39.4
WP_004843255.1\|2597847_2598228_+	HK97 gp10 family phage protein	Q6DMT7	Streptococcus_phage	2.3e-11	46.8
WP_004843254.1\|2598227_2598545_+	hypothetical protein	E4ZFM8	Streptococcus_phage	9.3e-19	43.6
WP_004843253.1\|2598548_2599169_+\|tail	tail protein	A0A2H4JDV4	uncultured_Caudovirales_phage	6.2e-43	49.5
WP_039959799.1\|2599172_2599550_+	hypothetical protein	A0A290GJX3	Caldibacillus_phage	1.2e-12	39.4
WP_004842223.1\|2600783_2601698_-\|transposase	IS3 family transposase	A0A1P8CWQ3	Bacillus_phage	1.6e-42	36.6
WP_004842221.1\|2601694_2601979_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_004844827.1\|2602169_2605097_+\|tail	phage tail tape measure protein	B6CXF2	Clostridium_phage	6.3e-85	48.6
WP_005335835.1\|2605460_2605658_-	hypothetical protein	NA	NA	NA	NA
WP_044930255.1\|2605905_2607282_-	virulence-associated protein E	W8CQP1	Croceibacter_phage	2.7e-54	31.9
WP_003021647.1\|2607193_2607832_-	DNA primase	A0A2R3UAP7	Myoviridae_environmental_samples	1.4e-05	38.5

DBSCAN-SWA_7

3141590 : 3162496

Streptococcus_phage(81.25%)

integrase

attL 3156414:3156428|attR 3164287:3164301

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004843349.1\|3141590_3141974_+	YdcP family protein	A0A1S5SF96	Streptococcus_phage	2.3e-32	55.9
WP_004843350.1\|3142060_3142546_+	hypothetical protein	NA	NA	NA	NA
WP_004843351.1\|3142637_3144029_+	cell division protein FtsK	A0A1S5SFB5	Streptococcus_phage	1.7e-173	66.0
WP_004843352.1\|3144123_3144513_+	hypothetical protein	NA	NA	NA	NA
WP_004843353.1\|3144662_3145859_+	replication initiation factor domain-containing protein	A0A1S5SEX3	Streptococcus_phage	1.9e-149	62.8
WP_004843354.1\|3145871_3146006_+	DUF3789 domain-containing protein	NA	NA	NA	NA
WP_004843355.1\|3146007_3146229_+	hypothetical protein	A0A1S5SEY0	Streptococcus_phage	4.5e-28	86.3
WP_004843356.1\|3146302_3146611_+	hypothetical protein	NA	NA	NA	NA
WP_004843358.1\|3146698_3146995_+	hypothetical protein	NA	NA	NA	NA
WP_004843359.1\|3146913_3147417_+	antirestriction protein ArdA	NA	NA	NA	NA
WP_004843360.1\|3147434_3147938_+	antirestriction protein ArdA	A0A1S5SF25	Streptococcus_phage	2.9e-54	60.2
WP_004843362.1\|3148054_3148453_+	conjugal transfer protein	A0A1S5SEX7	Streptococcus_phage	3.2e-48	73.0
WP_004843363.1\|3148430_3150881_+	ATP-binding protein	A0A1S5SF64	Streptococcus_phage	0.0e+00	76.2
WP_004843364.1\|3150880_3153082_+	MFS transporter	A0A1S5SF30	Streptococcus_phage	5.6e-187	60.4
WP_004843365.1\|3153078_3154086_+	lysozyme family protein	A0A1S5SEZ8	Streptococcus_phage	9.2e-137	70.8
WP_004843366.1\|3154102_3155014_+	conjugal transfer protein	A0A1S5SF22	Streptococcus_phage	5.3e-83	53.0
WP_004843367.1\|3155069_3155432_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_004843369.1\|3155580_3155805_+	hypothetical protein	NA	NA	NA	NA
WP_015530300.1\|3155824_3156187_+	hypothetical protein	NA	NA	NA	NA
WP_004843371.1\|3156221_3157100_-	HAMP domain-containing histidine kinase	W8CYF6	Bacillus_phage	6.0e-15	25.5
3156414:3156428	attL	NA	NA	NA	NA
WP_004843372.1\|3157126_3157948_-	ABC transporter permease	NA	NA	NA	NA
WP_004843373.1\|3157940_3158858_-	ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	1.6e-42	47.8
WP_004843374.1\|3158913_3159579_-	response regulator transcription factor	W8CYM9	Bacillus_phage	1.3e-25	31.9
WP_003061815.1\|3159974_3160394_+	sigma-70 family RNA polymerase sigma factor	A0A1S5SEW0	Streptococcus_phage	6.7e-25	41.6
WP_002322727.1\|3160397_3160652_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_004613735.1\|3161023_3161227_+	excisionase	A0A1S5SF07	Streptococcus_phage	2.5e-25	82.1
WP_004843378.1\|3161305_3162496_+\|integrase	site-specific integrase	A0A1S5SEW7	Streptococcus_phage	1.4e-155	67.0
3164287:3164301	attR	NA	NA	NA	NA

DBSCAN-SWA_8

3525198 : 3539049

Streptococcus_phage(41.67%)

protease,coat

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004844222.1\|3525198_3525522_+	YdcP family protein	A0A1S5SF38	Streptococcus_phage	1.7e-39	74.5
WP_004844221.1\|3525537_3525921_+	YdcP family protein	A0A1S5SF96	Streptococcus_phage	2.3e-43	71.0
WP_004844220.1\|3526041_3526422_+	DUF4825 domain-containing protein	NA	NA	NA	NA
WP_004844219.1\|3526476_3526809_+	DUF3784 domain-containing protein	NA	NA	NA	NA
WP_004844218.1\|3526878_3527274_+	hypothetical protein	NA	NA	NA	NA
WP_004844217.1\|3527377_3528775_+	hypothetical protein	A0A1S5SFB5	Streptococcus_phage	4.5e-174	64.6
WP_004844216.1\|3528933_3530166_+	replication initiation factor domain-containing protein	A0A1S5SEX3	Streptococcus_phage	7.1e-147	63.6
WP_004844215.1\|3530169_3530304_+	DUF3789 domain-containing protein	NA	NA	NA	NA
WP_004844214.1\|3530300_3530522_+	hypothetical protein	A0A1S5SEY0	Streptococcus_phage	5.3e-29	86.3
WP_039960037.1\|3531070_3531358_-\|protease	ribosomal-processing cysteine protease Prp	A0A059NT85	Lactococcus_phage	6.9e-05	37.5
WP_004844210.1\|3531419_3531602_-	hypothetical protein	NA	NA	NA	NA
WP_004844209.1\|3531692_3531926_-	hypothetical protein	NA	NA	NA	NA
WP_004844208.1\|3531970_3532132_-	hypothetical protein	NA	NA	NA	NA
WP_004844207.1\|3532191_3532848_-	Rha family transcriptional regulator	A0A0A7DN29	Lactobacillus_phage	1.3e-22	55.0
WP_004844206.1\|3532860_3533091_-	DUF739 family protein	A7TW90	Staphylococcus_phage	3.5e-15	54.1
WP_004844205.1\|3533256_3533826_+	transcriptional regulator	A5GYQ3	Lactococcus_phage	1.6e-16	55.6
WP_039960033.1\|3533830_3534292_+	membrane protein	B6SBW7	Clostridium_virus	4.8e-40	55.3
WP_004844203.1\|3534351_3534843_+	hypothetical protein	NA	NA	NA	NA
WP_004844202.1\|3535017_3536550_+	recombinase family protein	R9W007	Paenibacillus_phage	6.0e-87	36.0
WP_004844200.1\|3536793_3537063_-\|coat	spore coat protein CotJB	NA	NA	NA	NA
WP_039960039.1\|3537059_3537290_-\|coat	spore coat associated protein CotJA	NA	NA	NA	NA
WP_009244403.1\|3537492_3539049_+	ABC-F family ATP-binding cassette domain-containing protein	A0A1V0SKJ1	Klosneuvirus	9.2e-51	28.8

Anti-CRISPR protein detection

Acr_ID: NZ_CP043051.1|WP_039959728.1|2215818_2216094_+|hypothetical-protein

Click the colored protein region to show detailed information

Acr_ID: NZ_CP043051.1|WP_004843117.1|2216112_2216469_+|hypothetical-protein

Click the colored protein region to show detailed information

Acr_ID: NZ_CP043051.1|WP_039959730.1|2216438_2216666_-|hypothetical-protein

Click the colored protein region to show detailed information

Acr_ID: NZ_CP043051.1|WP_004844721.1|2246268_2246694_-|hypothetical-protein

Click the colored protein region to show detailed information

Acr_ID: NZ_CP043051.1|WP_105084815.1|2246820_2247000_+|hypothetical-protein

Click the colored protein region to show detailed information

Acr ID

Acr position

Acr size

Homology with known anti

Neighbor HTH/AcRanker

Neighbor Aca

In prophage

Protospacer in prophage

NZ_CP043051.1|WP_039959728.1|2215818_2216094_+|hypothetical-protein

2215818_2216094_+

91 aa aa

2214755-2266267

yes

CRISPR ID	CRISPR type	Spacer info	Spacer location	Spacer length	Protospacer location	Mismatch
NZ_CP043051_2	TypeI	2.1\|2292667\|38\|NZ_CP043051\|PILER-CR,CRISPRCasFinder,CRT	2292667-2292704	38	2235116-2235079	0
NZ_CP043051_2	TypeI	2.14\|2293532\|35\|NZ_CP043051\|PILER-CR,CRISPRCasFinder,CRT	2293532-2293566	35	2229381-2229347	0
NZ_CP043051_2	TypeI	2.15\|2293599\|37\|NZ_CP043051\|PILER-CR,CRISPRCasFinder,CRT	2293599-2293635	37	2239569-2239605	1
NZ_CP043051_2	TypeI	2.24\|2294193\|33\|NZ_CP043051\|PILER-CR,CRISPRCasFinder,CRT	2294193-2294225	33	2246899-2246931	2

1. spacer 2.1|2292667|38|NZ_CP043051|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP043051 position: 2235116-2235079, mismatch: 0

atcatttgcaatcaaatcacagacggagcaggcggcaa	CRISPR spacer
atcatttgcaatcaaatcacagacggagcaggcggcaa	Protospacer
**************************************

2. spacer 2.14|2293532|35|NZ_CP043051|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP043051 position: 2229381-2229347, mismatch: 0

attccacggtacagcttgtttttgagtttcggaag	CRISPR spacer
attccacggtacagcttgtttttgagtttcggaag	Protospacer
***********************************

3. spacer 2.15|2293599|37|NZ_CP043051|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP043051 position: 2239569-2239605, mismatch: 1

cccatcccgtgtgtttagggatcaggtcgggaaaaac	CRISPR spacer
cccatcccgtgtatttagggatcaggtcgggaaaaac	Protospacer
************.************************

4. spacer 2.24|2294193|33|NZ_CP043051|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP043051 position: 2246899-2246931, mismatch: 2

aagttccggttgccagaagggatgatcctgaca	CRISPR spacer
aaattccggctgccagaagggatgatcctgaca	Protospacer
**.******.***********************

NZ_CP043051.1|WP_004843117.1|2216112_2216469_+|hypothetical-protein

2216112_2216469_+

118 aa aa

2214755-2266267

yes

CRISPR ID	CRISPR type	Spacer info	Spacer location	Spacer length	Protospacer location	Mismatch
NZ_CP043051_2	TypeI	2.1\|2292667\|38\|NZ_CP043051\|PILER-CR,CRISPRCasFinder,CRT	2292667-2292704	38	2235116-2235079	0
NZ_CP043051_2	TypeI	2.14\|2293532\|35\|NZ_CP043051\|PILER-CR,CRISPRCasFinder,CRT	2293532-2293566	35	2229381-2229347	0
NZ_CP043051_2	TypeI	2.15\|2293599\|37\|NZ_CP043051\|PILER-CR,CRISPRCasFinder,CRT	2293599-2293635	37	2239569-2239605	1
NZ_CP043051_2	TypeI	2.24\|2294193\|33\|NZ_CP043051\|PILER-CR,CRISPRCasFinder,CRT	2294193-2294225	33	2246899-2246931	2

1. spacer 2.1|2292667|38|NZ_CP043051|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP043051 position: 2235116-2235079, mismatch: 0

atcatttgcaatcaaatcacagacggagcaggcggcaa	CRISPR spacer
atcatttgcaatcaaatcacagacggagcaggcggcaa	Protospacer
**************************************

2. spacer 2.14|2293532|35|NZ_CP043051|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP043051 position: 2229381-2229347, mismatch: 0

attccacggtacagcttgtttttgagtttcggaag	CRISPR spacer
attccacggtacagcttgtttttgagtttcggaag	Protospacer
***********************************

3. spacer 2.15|2293599|37|NZ_CP043051|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP043051 position: 2239569-2239605, mismatch: 1

cccatcccgtgtgtttagggatcaggtcgggaaaaac	CRISPR spacer
cccatcccgtgtatttagggatcaggtcgggaaaaac	Protospacer
************.************************

4. spacer 2.24|2294193|33|NZ_CP043051|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP043051 position: 2246899-2246931, mismatch: 2

aagttccggttgccagaagggatgatcctgaca	CRISPR spacer
aaattccggctgccagaagggatgatcctgaca	Protospacer
**.******.***********************

NZ_CP043051.1|WP_039959730.1|2216438_2216666_-|hypothetical-protein

2216438_2216666_-

75 aa aa

2214755-2266267

yes

CRISPR ID	CRISPR type	Spacer info	Spacer location	Spacer length	Protospacer location	Mismatch
NZ_CP043051_2	TypeI	2.1\|2292667\|38\|NZ_CP043051\|PILER-CR,CRISPRCasFinder,CRT	2292667-2292704	38	2235116-2235079	0
NZ_CP043051_2	TypeI	2.14\|2293532\|35\|NZ_CP043051\|PILER-CR,CRISPRCasFinder,CRT	2293532-2293566	35	2229381-2229347	0
NZ_CP043051_2	TypeI	2.15\|2293599\|37\|NZ_CP043051\|PILER-CR,CRISPRCasFinder,CRT	2293599-2293635	37	2239569-2239605	1
NZ_CP043051_2	TypeI	2.24\|2294193\|33\|NZ_CP043051\|PILER-CR,CRISPRCasFinder,CRT	2294193-2294225	33	2246899-2246931	2

1. spacer 2.1|2292667|38|NZ_CP043051|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP043051 position: 2235116-2235079, mismatch: 0

atcatttgcaatcaaatcacagacggagcaggcggcaa	CRISPR spacer
atcatttgcaatcaaatcacagacggagcaggcggcaa	Protospacer
**************************************

2. spacer 2.14|2293532|35|NZ_CP043051|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP043051 position: 2229381-2229347, mismatch: 0

attccacggtacagcttgtttttgagtttcggaag	CRISPR spacer
attccacggtacagcttgtttttgagtttcggaag	Protospacer
***********************************

3. spacer 2.15|2293599|37|NZ_CP043051|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP043051 position: 2239569-2239605, mismatch: 1

cccatcccgtgtgtttagggatcaggtcgggaaaaac	CRISPR spacer
cccatcccgtgtatttagggatcaggtcgggaaaaac	Protospacer
************.************************

4. spacer 2.24|2294193|33|NZ_CP043051|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP043051 position: 2246899-2246931, mismatch: 2

aagttccggttgccagaagggatgatcctgaca	CRISPR spacer
aaattccggctgccagaagggatgatcctgaca	Protospacer
**.******.***********************

NZ_CP043051.1|WP_004844721.1|2246268_2246694_-|hypothetical-protein

2246268_2246694_-

141 aa aa

2214755-2266267

yes

CRISPR ID	CRISPR type	Spacer info	Spacer location	Spacer length	Protospacer location	Mismatch
NZ_CP043051_2	TypeI	2.1\|2292667\|38\|NZ_CP043051\|PILER-CR,CRISPRCasFinder,CRT	2292667-2292704	38	2235116-2235079	0
NZ_CP043051_2	TypeI	2.14\|2293532\|35\|NZ_CP043051\|PILER-CR,CRISPRCasFinder,CRT	2293532-2293566	35	2229381-2229347	0
NZ_CP043051_2	TypeI	2.15\|2293599\|37\|NZ_CP043051\|PILER-CR,CRISPRCasFinder,CRT	2293599-2293635	37	2239569-2239605	1
NZ_CP043051_2	TypeI	2.24\|2294193\|33\|NZ_CP043051\|PILER-CR,CRISPRCasFinder,CRT	2294193-2294225	33	2246899-2246931	2

1. spacer 2.1|2292667|38|NZ_CP043051|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP043051 position: 2235116-2235079, mismatch: 0

atcatttgcaatcaaatcacagacggagcaggcggcaa	CRISPR spacer
atcatttgcaatcaaatcacagacggagcaggcggcaa	Protospacer
**************************************

2. spacer 2.14|2293532|35|NZ_CP043051|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP043051 position: 2229381-2229347, mismatch: 0

attccacggtacagcttgtttttgagtttcggaag	CRISPR spacer
attccacggtacagcttgtttttgagtttcggaag	Protospacer
***********************************

3. spacer 2.15|2293599|37|NZ_CP043051|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP043051 position: 2239569-2239605, mismatch: 1

cccatcccgtgtgtttagggatcaggtcgggaaaaac	CRISPR spacer
cccatcccgtgtatttagggatcaggtcgggaaaaac	Protospacer
************.************************

4. spacer 2.24|2294193|33|NZ_CP043051|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP043051 position: 2246899-2246931, mismatch: 2

aagttccggttgccagaagggatgatcctgaca	CRISPR spacer
aaattccggctgccagaagggatgatcctgaca	Protospacer
**.******.***********************

NZ_CP043051.1|WP_105084815.1|2246820_2247000_+|hypothetical-protein

2246820_2247000_+

59 aa aa

2214755-2266267

yes

CRISPR ID	CRISPR type	Spacer info	Spacer location	Spacer length	Protospacer location	Mismatch
NZ_CP043051_2	TypeI	2.1\|2292667\|38\|NZ_CP043051\|PILER-CR,CRISPRCasFinder,CRT	2292667-2292704	38	2235116-2235079	0
NZ_CP043051_2	TypeI	2.14\|2293532\|35\|NZ_CP043051\|PILER-CR,CRISPRCasFinder,CRT	2293532-2293566	35	2229381-2229347	0
NZ_CP043051_2	TypeI	2.15\|2293599\|37\|NZ_CP043051\|PILER-CR,CRISPRCasFinder,CRT	2293599-2293635	37	2239569-2239605	1
NZ_CP043051_2	TypeI	2.24\|2294193\|33\|NZ_CP043051\|PILER-CR,CRISPRCasFinder,CRT	2294193-2294225	33	2246899-2246931	2

1. spacer 2.1|2292667|38|NZ_CP043051|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP043051 position: 2235116-2235079, mismatch: 0

atcatttgcaatcaaatcacagacggagcaggcggcaa	CRISPR spacer
atcatttgcaatcaaatcacagacggagcaggcggcaa	Protospacer
**************************************

2. spacer 2.14|2293532|35|NZ_CP043051|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP043051 position: 2229381-2229347, mismatch: 0

attccacggtacagcttgtttttgagtttcggaag	CRISPR spacer
attccacggtacagcttgtttttgagtttcggaag	Protospacer
***********************************

3. spacer 2.15|2293599|37|NZ_CP043051|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP043051 position: 2239569-2239605, mismatch: 1

cccatcccgtgtgtttagggatcaggtcgggaaaaac	CRISPR spacer
cccatcccgtgtatttagggatcaggtcgggaaaaac	Protospacer
************.************************

4. spacer 2.24|2294193|33|NZ_CP043051|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP043051 position: 2246899-2246931, mismatch: 2

aagttccggttgccagaagggatgatcctgaca	CRISPR spacer
aaattccggctgccagaagggatgatcctgaca	Protospacer
**.******.***********************

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP043051

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CRISPR-Cas detection and classification

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

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Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information