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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP042296 Escherichia coli strain RM9088 plasmid p1RM9088, complete sequence 0 crisprs NA 0 0 1 0
NZ_CP042298 Escherichia coli strain RM9088 chromosome, complete genome 7 crisprs DinG,cas3,c2c9_V-U4,DEDDh,Cas14u_CAS-V,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2 1 15 14 0
NZ_CP042297 Escherichia coli strain RM9088 plasmid p2RM9088, complete sequence 0 crisprs NA 0 0 1 0

Results visualization

1. NZ_CP042296
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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity

CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 11054 : 150198 110 Stx2-converting_phage(25.93%) transposase,integrase,plate attL 11000:11059|attR 110240:111550

Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
2. NZ_CP042298
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP042298_1 280547-280688 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP042298_2 486775-486919 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP042298_3 998132-998280 Orphan I-F
2 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP042298_4 2224059-2224200 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP042298_5 4295877-4296332 Unclear I-E
7 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP042298_6 4322030-4323217 TypeI-E I-E
19 spacers
cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP042298_7 4417350-4417447 Orphan NA
1 spacers
csa3

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
NZ_CP042298_1 1.1|280588|60|NZ_CP042298|CRISPRCasFinder 280588-280647 60 NZ_CP042298.1 279846-279905 1 0.983

1. spacer 1.1|280588|60|NZ_CP042298|CRISPRCasFinder matches to position: 279846-279905, mismatch: 1, identity: 0.983 

tttacgccgcatccggcggttatgcgcagatgcctgatgcgacgctgacgcgtcttatca	CRISPR spacer
tttacgccgcatccggcggttgtgcgcagatgcctgatgcgacgctgacgcgtcttatca	Protospacer
*********************.**************************************

CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_CP042298_6 6.19|4323157|32|NZ_CP042298|PILER-CR,CRISPRCasFinder,CRT 4323157-4323188 32 NZ_CP029832 Azospirillum ramasamyi strain M2T2B2 plasmid unnamed2, complete sequence 175621-175652 6 0.812
NZ_CP042298_6 6.19|4323157|32|NZ_CP042298|PILER-CR,CRISPRCasFinder,CRT 4323157-4323188 32 NZ_CP016620 Microvirga ossetica strain V5/3m plasmid unnamed4, complete sequence 17783-17814 6 0.812
NZ_CP042298_5 5.2|4295967|32|NZ_CP042298|PILER-CR,CRISPRCasFinder,CRT 4295967-4295998 32 NZ_CP025510 Rhizobium leguminosarum bv. viciae strain UPM791 plasmid pRlvD, complete sequence 28936-28967 7 0.781
NZ_CP042298_5 5.6|4296211|32|NZ_CP042298|PILER-CR,CRISPRCasFinder,CRT 4296211-4296242 32 NZ_MG299151 Shigella sonnei strain SH287-2 plasmid pSH287-2, complete sequence 51276-51307 7 0.781
NZ_CP042298_5 5.6|4296211|32|NZ_CP042298|PILER-CR,CRISPRCasFinder,CRT 4296211-4296242 32 NZ_KY471628 Shigella sonnei strain SH15sh99 plasmid pSH15sh99, complete sequence 45716-45747 7 0.781
NZ_CP042298_5 5.6|4296211|32|NZ_CP042298|PILER-CR,CRISPRCasFinder,CRT 4296211-4296242 32 NZ_MG299131 Shigella sonnei strain SH271-2 plasmid pSH271-2, complete sequence 51276-51307 7 0.781
NZ_CP042298_5 5.6|4296211|32|NZ_CP042298|PILER-CR,CRISPRCasFinder,CRT 4296211-4296242 32 NZ_KY471629 Shigella sonnei strain SH15sh105 plasmid pSH15sh104, complete sequence 45716-45747 7 0.781
NZ_CP042298_5 5.6|4296211|32|NZ_CP042298|PILER-CR,CRISPRCasFinder,CRT 4296211-4296242 32 NZ_MG299133 Shigella sonnei strain SH272-2 plasmid pSH272-2, complete sequence 51276-51307 7 0.781
NZ_CP042298_5 5.6|4296211|32|NZ_CP042298|PILER-CR,CRISPRCasFinder,CRT 4296211-4296242 32 NZ_MG299128 Shigella sonnei strain SH262-2 plasmid pSH262-2, complete sequence 51276-51307 7 0.781
NZ_CP042298_5 5.6|4296211|32|NZ_CP042298|PILER-CR,CRISPRCasFinder,CRT 4296211-4296242 32 NZ_MG299147 Shigella sonnei strain SH284-2 plasmid pSH284-2, complete sequence 51276-51307 7 0.781
NZ_CP042298_5 5.6|4296211|32|NZ_CP042298|PILER-CR,CRISPRCasFinder,CRT 4296211-4296242 32 NC_018995 Escherichia coli plasmid pHUSEC41-1, complete sequence 29015-29046 7 0.781
NZ_CP042298_5 5.6|4296211|32|NZ_CP042298|PILER-CR,CRISPRCasFinder,CRT 4296211-4296242 32 NZ_CP053235 Escherichia coli strain SCU-106 plasmid pSCU-106-1, complete sequence 78292-78323 7 0.781
NZ_CP042298_5 5.6|4296211|32|NZ_CP042298|PILER-CR,CRISPRCasFinder,CRT 4296211-4296242 32 NZ_CP005999 Escherichia coli B7A plasmid pEB1, complete sequence 39563-39594 7 0.781
NZ_CP042298_5 5.6|4296211|32|NZ_CP042298|PILER-CR,CRISPRCasFinder,CRT 4296211-4296242 32 KU932021 Escherichia coli plasmid pEC3I, complete sequence 51902-51933 7 0.781
NZ_CP042298_5 5.6|4296211|32|NZ_CP042298|PILER-CR,CRISPRCasFinder,CRT 4296211-4296242 32 NZ_CP024154 Escherichia coli strain 14EC033 plasmid p14EC033g, complete sequence 18560-18591 7 0.781
NZ_CP042298_5 5.6|4296211|32|NZ_CP042298|PILER-CR,CRISPRCasFinder,CRT 4296211-4296242 32 NC_011754 Escherichia coli ED1a plasmid pECOED, complete sequence 49240-49271 7 0.781
NZ_CP042298_5 5.6|4296211|32|NZ_CP042298|PILER-CR,CRISPRCasFinder,CRT 4296211-4296242 32 NZ_CP015141 Escherichia coli strain Ecol_732 plasmid pEC732_3, complete sequence 81434-81465 7 0.781
NZ_CP042298_5 5.6|4296211|32|NZ_CP042298|PILER-CR,CRISPRCasFinder,CRT 4296211-4296242 32 NZ_LR213460 Shigella sonnei strain AUSMDU00008333 isolate AUSMDU00008333 plasmid 3 28916-28947 7 0.781
NZ_CP042298_5 5.6|4296211|32|NZ_CP042298|PILER-CR,CRISPRCasFinder,CRT 4296211-4296242 32 NZ_MH287044 Escherichia coli strain 5.1-R1 plasmid pCERC6, complete sequence 36182-36213 7 0.781
NZ_CP042298_5 5.6|4296211|32|NZ_CP042298|PILER-CR,CRISPRCasFinder,CRT 4296211-4296242 32 NZ_MH618673 Escherichia coli strain 838B plasmid p838B-R, complete sequence 32230-32261 7 0.781
NZ_CP042298_6 6.19|4323157|32|NZ_CP042298|PILER-CR,CRISPRCasFinder,CRT 4323157-4323188 32 NZ_KX443401 Rhodococcus hoagii strain PAM1572 plasmid pVAPN1572, complete sequence 30475-30506 7 0.781
NZ_CP042298_6 6.1|4322059|32|NZ_CP042298|PILER-CR,CRISPRCasFinder,CRT 4322059-4322090 32 NZ_CP032678 Pseudomonas sp. Leaf58 plasmid pBASL58, complete sequence 226962-226993 8 0.75
NZ_CP042298_6 6.2|4322120|32|NZ_CP042298|PILER-CR,CRISPRCasFinder,CRT 4322120-4322151 32 NC_010418 Clostridium botulinum A3 str. Loch Maree plasmid pCLK, complete sequence 220869-220900 8 0.75
NZ_CP042298_6 6.6|4322364|32|NZ_CP042298|PILER-CR,CRISPRCasFinder,CRT 4322364-4322395 32 MN234174 Mycobacterium phage Efra2, complete genome 11517-11548 8 0.75
NZ_CP042298_6 6.6|4322364|32|NZ_CP042298|PILER-CR,CRISPRCasFinder,CRT 4322364-4322395 32 MN234165 Mycobacterium phage Yunkel11, complete genome 11533-11564 8 0.75
NZ_CP042298_6 6.6|4322364|32|NZ_CP042298|PILER-CR,CRISPRCasFinder,CRT 4322364-4322395 32 MN234201 Mycobacterium phage Guanica15, complete genome 11533-11564 8 0.75
NZ_CP042298_6 6.6|4322364|32|NZ_CP042298|PILER-CR,CRISPRCasFinder,CRT 4322364-4322395 32 CP021891 Bacillus velezensis strain SRCM101413 plasmid pBV1413 sequence 3349-3380 8 0.75
NZ_CP042298_6 6.19|4323157|32|NZ_CP042298|PILER-CR,CRISPRCasFinder,CRT 4323157-4323188 32 NZ_CP020951 Rhizobium sp. CIAT894 plasmid pRheCIAT894d, complete sequence 539320-539351 8 0.75
NZ_CP042298_5 5.2|4295967|32|NZ_CP042298|PILER-CR,CRISPRCasFinder,CRT 4295967-4295998 32 NZ_CP021914 Sagittula sp. P11 plasmid unnamed1, complete sequence 50200-50231 9 0.719
NZ_CP042298_5 5.2|4295967|32|NZ_CP042298|PILER-CR,CRISPRCasFinder,CRT 4295967-4295998 32 NZ_CP003988 Streptomyces sp. 769 plasmid pSGZL, complete sequence 175100-175131 9 0.719
NZ_CP042298_5 5.4|4296089|32|NZ_CP042298|PILER-CR,CRISPRCasFinder,CRT 4296089-4296120 32 NC_007105 Bacillus cereus E33L plasmid pE33L54, complete sequence 9931-9962 9 0.719
NZ_CP042298_5 5.4|4296089|32|NZ_CP042298|PILER-CR,CRISPRCasFinder,CRT 4296089-4296120 32 NZ_CP009966 Bacillus cereus E33L plasmid pBCO_2, complete sequence 10500-10531 9 0.719
NZ_CP042298_6 6.1|4322059|32|NZ_CP042298|PILER-CR,CRISPRCasFinder,CRT 4322059-4322090 32 NC_005241 Cupriavidus necator H16 megaplasmid pHG1, complete sequence 396441-396472 9 0.719
NZ_CP042298_6 6.1|4322059|32|NZ_CP042298|PILER-CR,CRISPRCasFinder,CRT 4322059-4322090 32 NZ_CP039289 Cupriavidus necator H16 plasmid pHG1, complete sequence 396440-396471 9 0.719
NZ_CP042298_6 6.2|4322120|32|NZ_CP042298|PILER-CR,CRISPRCasFinder,CRT 4322120-4322151 32 NC_012654 Clostridium botulinum Ba4 str. 657 plasmid pCLJ, complete sequence 176095-176126 9 0.719
NZ_CP042298_6 6.2|4322120|32|NZ_CP042298|PILER-CR,CRISPRCasFinder,CRT 4322120-4322151 32 NZ_CP031095 Clostridium botulinum strain CFSAN034200 plasmid p1_CDC51232, complete sequence 206057-206088 9 0.719
NZ_CP042298_6 6.2|4322120|32|NZ_CP042298|PILER-CR,CRISPRCasFinder,CRT 4322120-4322151 32 NC_018878 Bacillus thuringiensis Bt407 plasmid BTB_502p, complete sequence 403168-403199 9 0.719
NZ_CP042298_6 6.2|4322120|32|NZ_CP042298|PILER-CR,CRISPRCasFinder,CRT 4322120-4322151 32 NZ_CP006909 Clostridium botulinum CDC_1436 plasmid pCBG, complete sequence 61214-61245 9 0.719
NZ_CP042298_6 6.4|4322242|32|NZ_CP042298|PILER-CR,CRISPRCasFinder,CRT 4322242-4322273 32 NZ_MK422609 Psychrobacter sp. DAB_AL32B plasmid pP32BP2, complete sequence 50425-50456 9 0.719
NZ_CP042298_6 6.5|4322303|32|NZ_CP042298|PILER-CR,CRISPRCasFinder,CRT 4322303-4322334 32 MK765664 Tortoise microvirus 107 isolate 107_SP_2, complete genome 3812-3843 9 0.719
NZ_CP042298_6 6.6|4322364|32|NZ_CP042298|PILER-CR,CRISPRCasFinder,CRT 4322364-4322395 32 CP053577 Salmonella enterica strain 2012K-0845 plasmid unnamed2, complete sequence 126517-126548 9 0.719
NZ_CP042298_6 6.6|4322364|32|NZ_CP042298|PILER-CR,CRISPRCasFinder,CRT 4322364-4322395 32 NZ_CP047178 Rathayibacter sp. VKM Ac-2759 plasmid unnamed2, complete sequence 39260-39291 9 0.719
NZ_CP042298_6 6.11|4322669|32|NZ_CP042298|PILER-CR,CRISPRCasFinder,CRT 4322669-4322700 32 NZ_CP011665 Streptomyces sp. Mg1 plasmid pSMg1-1, complete sequence 448358-448389 9 0.719
NZ_CP042298_6 6.11|4322669|32|NZ_CP042298|PILER-CR,CRISPRCasFinder,CRT 4322669-4322700 32 NZ_CP033582 Streptomyces sp. ADI95-16 plasmid pADI95-16a, complete sequence 185689-185720 9 0.719
NZ_CP042298_2 2.1|486818|59|NZ_CP042298|CRISPRCasFinder 486818-486876 59 MT230312 Escherichia coli strain DH5alpha plasmid pESBL31, complete sequence 97-155 10 0.831
NZ_CP042298_5 5.3|4296028|32|NZ_CP042298|PILER-CR,CRISPRCasFinder,CRT 4296028-4296059 32 MK249872 Vibrio phage LP.1, complete genome 42049-42080 10 0.688
NZ_CP042298_6 6.1|4322059|32|NZ_CP042298|PILER-CR,CRISPRCasFinder,CRT 4322059-4322090 32 NC_006569 Ruegeria pomeroyi DSS-3 megaplasmid, complete sequence 420067-420098 10 0.688
NZ_CP042298_6 6.2|4322120|32|NZ_CP042298|PILER-CR,CRISPRCasFinder,CRT 4322120-4322151 32 NZ_CP014152 Clostridium botulinum strain BrDura plasmid pRSJ20_1, complete sequence 234806-234837 10 0.688
NZ_CP042298_6 6.2|4322120|32|NZ_CP042298|PILER-CR,CRISPRCasFinder,CRT 4322120-4322151 32 NZ_CP013710 Clostridium botulinum strain F634 plasmid pRSJ2_3, complete sequence 44548-44579 10 0.688
NZ_CP042298_6 6.2|4322120|32|NZ_CP042298|PILER-CR,CRISPRCasFinder,CRT 4322120-4322151 32 NZ_CP013700 Clostridium botulinum strain AM1195 plasmid pRSJ11_1, complete sequence 232639-232670 10 0.688
NZ_CP042298_6 6.5|4322303|32|NZ_CP042298|PILER-CR,CRISPRCasFinder,CRT 4322303-4322334 32 NC_030948 Ralstonia phage RSP15 DNA, complete genome 99068-99099 10 0.688
NZ_CP042298_6 6.12|4322730|32|NZ_CP042298|PILER-CR,CRISPRCasFinder,CRT 4322730-4322761 32 KM389362 UNVERIFIED: Escherichia phage Phi05_1387 B clone contig00003 genomic sequence 444-475 10 0.688
NZ_CP042298_6 6.18|4323096|32|NZ_CP042298|PILER-CR,CRISPRCasFinder,CRT 4323096-4323127 32 NZ_CP009112 Rhodococcus opacus strain 1CP plasmid pR1CP1, complete sequence 89254-89285 10 0.688
NZ_CP042298_2 2.1|486818|59|NZ_CP042298|CRISPRCasFinder 486818-486876 59 NZ_AP023206 Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence 40375-40433 11 0.814
NZ_CP042298_6 6.3|4322181|32|NZ_CP042298|PILER-CR,CRISPRCasFinder,CRT 4322181-4322212 32 CP031017 Lactobacillus helveticus isolate NWC_2_3 plasmid pNWC_2_3, complete sequence 16345-16376 11 0.656

1. spacer 6.19|4323157|32|NZ_CP042298|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP029832 (Azospirillum ramasamyi strain M2T2B2 plasmid unnamed2, complete sequence) position: , mismatch: 6, identity: 0.812 

tcgcg-atatccggcagctttgccagtgcctca	CRISPR spacer
-cgcgcgcctccggcagcttcgccagtgcctcc	Protospacer
 **** .. ***********.***********

2. spacer 6.19|4323157|32|NZ_CP042298|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP016620 (Microvirga ossetica strain V5/3m plasmid unnamed4, complete sequence) position: , mismatch: 6, identity: 0.812 

tcgcgata-tccggcagctttgccagtgcctca	CRISPR spacer
-agccatagtcccgcagctttgcgagtgcctcc	Protospacer
  ** *** *** ********** ********

3. spacer 5.2|4295967|32|NZ_CP042298|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP025510 (Rhizobium leguminosarum bv. viciae strain UPM791 plasmid pRlvD, complete sequence) position: , mismatch: 7, identity: 0.781 

gtgagtccgtcagcggtgcgccgctgc-aacac	CRISPR spacer
ccgcgtccgtcaccgatgcgccgctgctgaca-	Protospacer
 .* ******** **.*********** .***

4. spacer 5.6|4296211|32|NZ_CP042298|PILER-CR,CRISPRCasFinder,CRT matches to NZ_MG299151 (Shigella sonnei strain SH287-2 plasmid pSH287-2, complete sequence) position: , mismatch: 7, identity: 0.781 

aaatatccagggctgggctggaggcagacggc--	CRISPR spacer
cgttatccagggctgagctgcaggcag--ggcca	Protospacer
 . ************.**** ******  ***

5. spacer 5.6|4296211|32|NZ_CP042298|PILER-CR,CRISPRCasFinder,CRT matches to NZ_KY471628 (Shigella sonnei strain SH15sh99 plasmid pSH15sh99, complete sequence) position: , mismatch: 7, identity: 0.781 

aaatatccagggctgggctggaggcagacggc--	CRISPR spacer
cgttatccagggctgagctgcaggcag--ggcca	Protospacer
 . ************.**** ******  ***

6. spacer 5.6|4296211|32|NZ_CP042298|PILER-CR,CRISPRCasFinder,CRT matches to NZ_MG299131 (Shigella sonnei strain SH271-2 plasmid pSH271-2, complete sequence) position: , mismatch: 7, identity: 0.781 

aaatatccagggctgggctggaggcagacggc--	CRISPR spacer
cgttatccagggctgagctgcaggcag--ggcca	Protospacer
 . ************.**** ******  ***

7. spacer 5.6|4296211|32|NZ_CP042298|PILER-CR,CRISPRCasFinder,CRT matches to NZ_KY471629 (Shigella sonnei strain SH15sh105 plasmid pSH15sh104, complete sequence) position: , mismatch: 7, identity: 0.781 

aaatatccagggctgggctggaggcagacggc--	CRISPR spacer
cgttatccagggctgagctgcaggcag--ggcca	Protospacer
 . ************.**** ******  ***

8. spacer 5.6|4296211|32|NZ_CP042298|PILER-CR,CRISPRCasFinder,CRT matches to NZ_MG299133 (Shigella sonnei strain SH272-2 plasmid pSH272-2, complete sequence) position: , mismatch: 7, identity: 0.781 

aaatatccagggctgggctggaggcagacggc--	CRISPR spacer
cgttatccagggctgagctgcaggcag--ggcca	Protospacer
 . ************.**** ******  ***

9. spacer 5.6|4296211|32|NZ_CP042298|PILER-CR,CRISPRCasFinder,CRT matches to NZ_MG299128 (Shigella sonnei strain SH262-2 plasmid pSH262-2, complete sequence) position: , mismatch: 7, identity: 0.781 

aaatatccagggctgggctggaggcagacggc--	CRISPR spacer
cgttatccagggctgagctgcaggcag--ggcca	Protospacer
 . ************.**** ******  ***

10. spacer 5.6|4296211|32|NZ_CP042298|PILER-CR,CRISPRCasFinder,CRT matches to NZ_MG299147 (Shigella sonnei strain SH284-2 plasmid pSH284-2, complete sequence) position: , mismatch: 7, identity: 0.781 

aaatatccagggctgggctggaggcagacggc--	CRISPR spacer
cgttatccagggctgagctgcaggcag--ggcca	Protospacer
 . ************.**** ******  ***

11. spacer 5.6|4296211|32|NZ_CP042298|PILER-CR,CRISPRCasFinder,CRT matches to NC_018995 (Escherichia coli plasmid pHUSEC41-1, complete sequence) position: , mismatch: 7, identity: 0.781 

aaatatccagggctgggctggaggcagacggc--	CRISPR spacer
cgttatccagggctgagctgcaggcag--ggcca	Protospacer
 . ************.**** ******  ***

12. spacer 5.6|4296211|32|NZ_CP042298|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP053235 (Escherichia coli strain SCU-106 plasmid pSCU-106-1, complete sequence) position: , mismatch: 7, identity: 0.781 

aaatatccagggctgggctggaggcagacggc--	CRISPR spacer
cgttatccagggctgagctgcaggcag--ggcca	Protospacer
 . ************.**** ******  ***

13. spacer 5.6|4296211|32|NZ_CP042298|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP005999 (Escherichia coli B7A plasmid pEB1, complete sequence) position: , mismatch: 7, identity: 0.781 

aaatatccagggctgggctggaggcagacggc--	CRISPR spacer
cgttatccagggctgagctgcaggcag--ggcca	Protospacer
 . ************.**** ******  ***

14. spacer 5.6|4296211|32|NZ_CP042298|PILER-CR,CRISPRCasFinder,CRT matches to KU932021 (Escherichia coli plasmid pEC3I, complete sequence) position: , mismatch: 7, identity: 0.781 

aaatatccagggctgggctggaggcagacggc--	CRISPR spacer
cgttatccagggctgagctgcaggcag--ggcca	Protospacer
 . ************.**** ******  ***

15. spacer 5.6|4296211|32|NZ_CP042298|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP024154 (Escherichia coli strain 14EC033 plasmid p14EC033g, complete sequence) position: , mismatch: 7, identity: 0.781 

aaatatccagggctgggctggaggcagacggc--	CRISPR spacer
cgttatccagggctgagctgcaggcag--ggcca	Protospacer
 . ************.**** ******  ***

16. spacer 5.6|4296211|32|NZ_CP042298|PILER-CR,CRISPRCasFinder,CRT matches to NC_011754 (Escherichia coli ED1a plasmid pECOED, complete sequence) position: , mismatch: 7, identity: 0.781 

aaatatccagggctgggctggaggcagacggc--	CRISPR spacer
cgttatccagggctgagctgcaggcag--ggcca	Protospacer
 . ************.**** ******  ***

17. spacer 5.6|4296211|32|NZ_CP042298|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP015141 (Escherichia coli strain Ecol_732 plasmid pEC732_3, complete sequence) position: , mismatch: 7, identity: 0.781 

aaatatccagggctgggctggaggcagacggc--	CRISPR spacer
cgttatccagggctgagctgcaggcag--ggcca	Protospacer
 . ************.**** ******  ***

18. spacer 5.6|4296211|32|NZ_CP042298|PILER-CR,CRISPRCasFinder,CRT matches to NZ_LR213460 (Shigella sonnei strain AUSMDU00008333 isolate AUSMDU00008333 plasmid 3) position: , mismatch: 7, identity: 0.781 

aaatatccagggctgggctggaggcagacggc--	CRISPR spacer
cgttatccagggctgagctgcaggcag--ggcca	Protospacer
 . ************.**** ******  ***

19. spacer 5.6|4296211|32|NZ_CP042298|PILER-CR,CRISPRCasFinder,CRT matches to NZ_MH287044 (Escherichia coli strain 5.1-R1 plasmid pCERC6, complete sequence) position: , mismatch: 7, identity: 0.781 

aaatatccagggctgggctggaggcagacggc--	CRISPR spacer
cgttatccagggctgagctgcaggcag--ggcca	Protospacer
 . ************.**** ******  ***

20. spacer 5.6|4296211|32|NZ_CP042298|PILER-CR,CRISPRCasFinder,CRT matches to NZ_MH618673 (Escherichia coli strain 838B plasmid p838B-R, complete sequence) position: , mismatch: 7, identity: 0.781 

aaatatccagggctgggctggaggcagacggc--	CRISPR spacer
cgttatccagggctgagctgcaggcag--ggcca	Protospacer
 . ************.**** ******  ***

21. spacer 6.19|4323157|32|NZ_CP042298|PILER-CR,CRISPRCasFinder,CRT matches to NZ_KX443401 (Rhodococcus hoagii strain PAM1572 plasmid pVAPN1572, complete sequence) position: , mismatch: 7, identity: 0.781 

tcgcgatatccggcagctttgccagtgcctca	CRISPR spacer
gcgcgatgtccggcagcttcgccagcgggtcg	Protospacer
 ******.***********.*****.*  **.

22. spacer 6.1|4322059|32|NZ_CP042298|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP032678 (Pseudomonas sp. Leaf58 plasmid pBASL58, complete sequence) position: , mismatch: 8, identity: 0.75 

gcttgc--agcagctgcgccaacgtctgaatatg	CRISPR spacer
--tggccaagcagctgcgccaacagctgaatggc	Protospacer
  * **  ***************. ******.

23. spacer 6.2|4322120|32|NZ_CP042298|PILER-CR,CRISPRCasFinder,CRT matches to NC_010418 (Clostridium botulinum A3 str. Loch Maree plasmid pCLK, complete sequence) position: , mismatch: 8, identity: 0.75 

catatatagatcgtaaagataactcgtattta	CRISPR spacer
catatatagatcgaaaagaaaaccaaaataaa	Protospacer
************* ***** ***. . **  *

24. spacer 6.6|4322364|32|NZ_CP042298|PILER-CR,CRISPRCasFinder,CRT matches to MN234174 (Mycobacterium phage Efra2, complete genome) position: , mismatch: 8, identity: 0.75 

gggtgattaccgtcggcggctcgctggatttg	CRISPR spacer
cgctgtttaccgtcggcgcctcgctggcgatc	Protospacer
 * ** ************ ********   *

25. spacer 6.6|4322364|32|NZ_CP042298|PILER-CR,CRISPRCasFinder,CRT matches to MN234165 (Mycobacterium phage Yunkel11, complete genome) position: , mismatch: 8, identity: 0.75 

gggtgattaccgtcggcggctcgctggatttg	CRISPR spacer
cgctgtttaccgtcggcgcctcgctggcgatc	Protospacer
 * ** ************ ********   *

26. spacer 6.6|4322364|32|NZ_CP042298|PILER-CR,CRISPRCasFinder,CRT matches to MN234201 (Mycobacterium phage Guanica15, complete genome) position: , mismatch: 8, identity: 0.75 

gggtgattaccgtcggcggctcgctggatttg	CRISPR spacer
cgctgtttaccgtcggcgcctcgctggcgatc	Protospacer
 * ** ************ ********   *

27. spacer 6.6|4322364|32|NZ_CP042298|PILER-CR,CRISPRCasFinder,CRT matches to CP021891 (Bacillus velezensis strain SRCM101413 plasmid pBV1413 sequence) position: , mismatch: 8, identity: 0.75 

gggtgattaccgtcggcggctcgctggatttg	CRISPR spacer
tgctgattaccgtcggcggcgggctgtgcatg	Protospacer
 * *****************  **** .. **

28. spacer 6.19|4323157|32|NZ_CP042298|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP020951 (Rhizobium sp. CIAT894 plasmid pRheCIAT894d, complete sequence) position: , mismatch: 8, identity: 0.75 

tcgcgatatccggcagctttgccagtgcctca	CRISPR spacer
tcgcgatatccggcagcgtcgccgaggccatc	Protospacer
***************** *.***.. *** .

29. spacer 5.2|4295967|32|NZ_CP042298|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP021914 (Sagittula sp. P11 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.719 

gtgagtccgtcagcggtgcgccgctgcaacac	CRISPR spacer
tggagtccgacatcggtgcgccgcttttcgac	Protospacer
  ******* ** ************ .   **

30. spacer 5.2|4295967|32|NZ_CP042298|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP003988 (Streptomyces sp. 769 plasmid pSGZL, complete sequence) position: , mismatch: 9, identity: 0.719 

gtgagtccgtcagcggtgcgccgctgcaacac	CRISPR spacer
gtgaggcggtcagcggtgcgccggcggtgttc	Protospacer
***** * *************** .*  .. *

31. spacer 5.4|4296089|32|NZ_CP042298|PILER-CR,CRISPRCasFinder,CRT matches to NC_007105 (Bacillus cereus E33L plasmid pE33L54, complete sequence) position: , mismatch: 9, identity: 0.719 

gctaatttacgtaatttacgtgctattgcact	CRISPR spacer
acaagtttacgaaatctacgtgctattgagtc	Protospacer
.* *.****** ***.************ ...

32. spacer 5.4|4296089|32|NZ_CP042298|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP009966 (Bacillus cereus E33L plasmid pBCO_2, complete sequence) position: , mismatch: 9, identity: 0.719 

gctaatttacgtaatttacgtgctattgcact	CRISPR spacer
acaagtttacgaaatctacgtgctattgagtc	Protospacer
.* *.****** ***.************ ...

33. spacer 6.1|4322059|32|NZ_CP042298|PILER-CR,CRISPRCasFinder,CRT matches to NC_005241 (Cupriavidus necator H16 megaplasmid pHG1, complete sequence) position: , mismatch: 9, identity: 0.719 

gcttgcagcagctgcgccaacgtctgaatatg	CRISPR spacer
tacgccatcagctgcgccagcgtctgaatgtc	Protospacer
  .  ** ***********.*********.*

34. spacer 6.1|4322059|32|NZ_CP042298|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP039289 (Cupriavidus necator H16 plasmid pHG1, complete sequence) position: , mismatch: 9, identity: 0.719 

gcttgcagcagctgcgccaacgtctgaatatg	CRISPR spacer
tacgccatcagctgcgccagcgtctgaatgtc	Protospacer
  .  ** ***********.*********.*

35. spacer 6.2|4322120|32|NZ_CP042298|PILER-CR,CRISPRCasFinder,CRT matches to NC_012654 (Clostridium botulinum Ba4 str. 657 plasmid pCLJ, complete sequence) position: , mismatch: 9, identity: 0.719 

catatatagatcgtaaagataactcgtattta	CRISPR spacer
catatatagatcgaaaagaaaaccaaaataag	Protospacer
************* ***** ***. . **  .

36. spacer 6.2|4322120|32|NZ_CP042298|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP031095 (Clostridium botulinum strain CFSAN034200 plasmid p1_CDC51232, complete sequence) position: , mismatch: 9, identity: 0.719 

catatatagatcgtaaagataactcgtattta	CRISPR spacer
catatatagatcgaaaagaaaaccaaaataag	Protospacer
************* ***** ***. . **  .

37. spacer 6.2|4322120|32|NZ_CP042298|PILER-CR,CRISPRCasFinder,CRT matches to NC_018878 (Bacillus thuringiensis Bt407 plasmid BTB_502p, complete sequence) position: , mismatch: 9, identity: 0.719 

catatatagatcgtaaagataactcgtattta	CRISPR spacer
aaatggaagatggtaaagaaaactcgtattaa	Protospacer
 *   . **** ******* ********** *

38. spacer 6.2|4322120|32|NZ_CP042298|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP006909 (Clostridium botulinum CDC_1436 plasmid pCBG, complete sequence) position: , mismatch: 9, identity: 0.719 

catatatagatcgtaaagataactcgtattta	CRISPR spacer
catatatagatcgaaaagaaaaccaaaataag	Protospacer
************* ***** ***. . **  .

39. spacer 6.4|4322242|32|NZ_CP042298|PILER-CR,CRISPRCasFinder,CRT matches to NZ_MK422609 (Psychrobacter sp. DAB_AL32B plasmid pP32BP2, complete sequence) position: , mismatch: 9, identity: 0.719 

agaatctaccgcgtcggctatggcctgatagt	CRISPR spacer
gaaccctaccgcgtcagctacggcctgaaacg	Protospacer
..* .**********.****.******* *

40. spacer 6.5|4322303|32|NZ_CP042298|PILER-CR,CRISPRCasFinder,CRT matches to MK765664 (Tortoise microvirus 107 isolate 107_SP_2, complete genome) position: , mismatch: 9, identity: 0.719 

cggccgaagccgcttggattactgct--tcgagt	CRISPR spacer
acaccgatgcggcttggattactgctaaccaa--	Protospacer
  .**** ** ***************  .*.*

41. spacer 6.6|4322364|32|NZ_CP042298|PILER-CR,CRISPRCasFinder,CRT matches to CP053577 (Salmonella enterica strain 2012K-0845 plasmid unnamed2, complete sequence) position: , mismatch: 9, identity: 0.719 

gggtgattaccgtcggcggctcgctggatttg	CRISPR spacer
agcagattaccggcggcggcacgctggaaagt	Protospacer
.*  ******** ******* *******

42. spacer 6.6|4322364|32|NZ_CP042298|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP047178 (Rathayibacter sp. VKM Ac-2759 plasmid unnamed2, complete sequence) position: , mismatch: 9, identity: 0.719 

gggtgattaccgtcggcggctcgctggatttg	CRISPR spacer
tcgctcccaccgtcggcggctcgatggatgtg	Protospacer
  *.  ..*************** ***** **

43. spacer 6.11|4322669|32|NZ_CP042298|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP011665 (Streptomyces sp. Mg1 plasmid pSMg1-1, complete sequence) position: , mismatch: 9, identity: 0.719 

tcgcgccagaactggaggatctccgggttatg	CRISPR spacer
gggagccggagctggaggatctccgggagcgg	Protospacer
  * ***.**.****************    *

44. spacer 6.11|4322669|32|NZ_CP042298|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP033582 (Streptomyces sp. ADI95-16 plasmid pADI95-16a, complete sequence) position: , mismatch: 9, identity: 0.719 

tcgcgccagaactggaggatctccgggttatg	CRISPR spacer
gggagccggagctggaggatctccgggagcgg	Protospacer
  * ***.**.****************    *

45. spacer 2.1|486818|59|NZ_CP042298|CRISPRCasFinder matches to MT230312 (Escherichia coli strain DH5alpha plasmid pESBL31, complete sequence) position: , mismatch: 10, identity: 0.831 

ggtgccagaaccgtaggccggataaggcgttcacgccgcatccggcaataagtgctccg-	CRISPR spacer
gagcacagaaccgtaggacggataaggcgttcacgccgcatccggcgat-cgtgcactga	Protospacer
*.   ************ ****************************.**  **** *.*

46. spacer 5.3|4296028|32|NZ_CP042298|PILER-CR,CRISPRCasFinder,CRT matches to MK249872 (Vibrio phage LP.1, complete genome) position: , mismatch: 10, identity: 0.688 

tagtcaagcggtaattcatcgtctgcagatcc	CRISPR spacer
tccacaagcactaattcatcgtctgcaccagt	Protospacer
*   *****. ****************    .

47. spacer 6.1|4322059|32|NZ_CP042298|PILER-CR,CRISPRCasFinder,CRT matches to NC_006569 (Ruegeria pomeroyi DSS-3 megaplasmid, complete sequence) position: , mismatch: 10, identity: 0.688 

gcttgcagcagctgcgccaacgtctgaatatg	CRISPR spacer
ttgtgcagcagctgcgccagcgcctgctgaac	Protospacer
 . ****************.**.***   *

48. spacer 6.2|4322120|32|NZ_CP042298|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP014152 (Clostridium botulinum strain BrDura plasmid pRSJ20_1, complete sequence) position: , mismatch: 10, identity: 0.688 

catatatagatcgtaaagataactcgtattta	CRISPR spacer
catatatagatcgaaaagaaaaccaaagcaaa	Protospacer
************* ***** ***. . ..  *

49. spacer 6.2|4322120|32|NZ_CP042298|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013710 (Clostridium botulinum strain F634 plasmid pRSJ2_3, complete sequence) position: , mismatch: 10, identity: 0.688 

catatatagatcgtaaagataactcgtattta	CRISPR spacer
catatatagatcgaaaagaaaaccaaagcaaa	Protospacer
************* ***** ***. . ..  *

50. spacer 6.2|4322120|32|NZ_CP042298|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013700 (Clostridium botulinum strain AM1195 plasmid pRSJ11_1, complete sequence) position: , mismatch: 10, identity: 0.688 

catatatagatcgtaaagataactcgtattta	CRISPR spacer
catatatagatcgaaaagaaaaccaaagcaaa	Protospacer
************* ***** ***. . ..  *

51. spacer 6.5|4322303|32|NZ_CP042298|PILER-CR,CRISPRCasFinder,CRT matches to NC_030948 (Ralstonia phage RSP15 DNA, complete genome) position: , mismatch: 10, identity: 0.688 

cggccgaagccgcttggattactgcttcgagt	CRISPR spacer
gggccgaagccccttgaattactgacccttaa	Protospacer
 ********** ****.******* ..*  .

52. spacer 6.12|4322730|32|NZ_CP042298|PILER-CR,CRISPRCasFinder,CRT matches to KM389362 (UNVERIFIED: Escherichia phage Phi05_1387 B clone contig00003 genomic sequence) position: , mismatch: 10, identity: 0.688 

agttccgcacaatcccggagggcgaaaaacag	CRISPR spacer
tgttccgcacaatccagcagggcgtccgtcgc	Protospacer
 ************** * ******   . *.

53. spacer 6.18|4323096|32|NZ_CP042298|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP009112 (Rhodococcus opacus strain 1CP plasmid pR1CP1, complete sequence) position: , mismatch: 10, identity: 0.688 

ctgatttgatgggggccggtgcaggggataag	CRISPR spacer
gcgatctgatgcgggccggtgcaggacggcgg	Protospacer
 .***.***** *************. .  .*

54. spacer 2.1|486818|59|NZ_CP042298|CRISPRCasFinder matches to NZ_AP023206 (Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence) position: , mismatch: 11, identity: 0.814 

-ggtgccagaaccgtaggccggataaggcgttcacgccgcatccggcaataagtgctccg	CRISPR spacer
tcgcacca-aaccgtaggccggataaggcgtttacgccgcatccggcaaaaagccgtacc	Protospacer
  *..*** ***********************.**************** ***.  * *

55. spacer 6.3|4322181|32|NZ_CP042298|PILER-CR,CRISPRCasFinder,CRT matches to CP031017 (Lactobacillus helveticus isolate NWC_2_3 plasmid pNWC_2_3, complete sequence) position: , mismatch: 11, identity: 0.656 

cctccacgccagatgaggcgagggagatcaga	CRISPR spacer
ttcatacgcctgatcaggcgagggagatggcc	Protospacer
... .***** *** ************* .

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 197230 : 271623 60 Stx2-converting_phage(25.0%) transposase,tRNA,protease,plate NA
DBSCAN-SWA_2 1373029 : 1440376 86 Escherichia_phage(38.18%) capsid,transposase,holin,plate,portal,head,terminase,integrase,tail,protease attL 1372866:1372893|attR 1424533:1424560
DBSCAN-SWA_3 1516308 : 1592189 92 Escherichia_phage(81.16%) transposase,tRNA,holin,plate,terminase,integrase,tail attL 1539082:1539107|attR 1590256:1590281
DBSCAN-SWA_4 1791777 : 1853138 71 Enterobacteria_phage(38.0%) transposase,portal,lysis,terminase,integrase,tail,protease attL 1823769:1823785|attR 1857833:1857849
DBSCAN-SWA_5 1985356 : 2089103 129 Enterobacteria_phage(41.11%) capsid,transposase,tRNA,holin,plate,portal,head,terminase,integrase,tail attL 1981349:1981365|attR 2032674:2032690
DBSCAN-SWA_6 2312327 : 2374319 76 Enterobacteria_phage(33.33%) capsid,transposase,holin,portal,head,terminase,integrase,tail attL 2337878:2337893|attR 2376514:2376529
DBSCAN-SWA_7 2665789 : 2705721 53 Vibrio_phage(48.72%) transposase,plate,head,integrase,tail,protease attL 2663437:2663451|attR 2706681:2706695
DBSCAN-SWA_8 2730169 : 2773910 65 Shigella_phage(55.93%) capsid,tRNA,plate,holin,portal,head,terminase,integrase,tail,protease attL 2724443:2724457|attR 2754318:2754332
DBSCAN-SWA_9 3973403 : 4024013 52 Stx2-converting_phage(33.33%) transposase,protease NA
DBSCAN-SWA_10 4027995 : 4100422 59 Stx2-converting_phage(40.0%) transposase,tRNA,integrase,protease attL 4059223:4059238|attR 4093331:4093346
DBSCAN-SWA_11 4330642 : 4343825 12 Escherichia_phage(50.0%) NA NA
DBSCAN-SWA_12 4690325 : 4763668 98 Enterobacteria_phage(29.41%) capsid,tRNA,holin,plate,portal,lysis,head,terminase,integrase,tail,protease attL 4686635:4686651|attR 4734982:4734998
DBSCAN-SWA_13 4979681 : 4989122 10 Enterobacteria_phage(85.71%) NA NA
DBSCAN-SWA_14 5123209 : 5240837 104 Enterobacteria_phage(31.34%) capsid,transposase,holin,portal,head,terminase,integrase,tail,protease attL 5145928:5145942|attR 5195096:5195110

Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
3. NZ_CP042297
Click the left colored region to show detailed information

CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity

CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 711 : 14481 18 Stx2-converting_phage(46.15%) transposase NA

Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage