CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP040751	Desulfovibrio sp. IOR2 chromosome, complete genome	3 crisprs	csa3,cas3,cas3HD,cas5,cas8c,cas7b,cas2	0	4	3	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP040751_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP040751_1

1474048-1475999

TypeI

Consensus_repeat	Method
GTCGCGCTCCCTGCGGGCGCGTGGTTTGAAAC	PILER-CR
GTCGCGCTCCCTGCGGGCGCGTGGTTTGAAAC	CRISPRCasFinder
GTCGCGCTCCCTGCGGGCGCGTGGTTTGAAAC	CRT

29 spacers

cas3,cas7b,cas8c,cas5

The CRISPR arrays of NZ_CP040751_1

>merge|NZ_CP040751|1|1474048-1475999|PILER-CR,CRISPRCasFinder,CRT
GTCGCGCTCCCTGCGGGCGCGTGGTTTGAAACATTCGTGATCCTGAGGCAGATGGAGAGGTAGGTGTCGCGCTCCCTGCGGGCGCGTGGTTTGAAACCAGGTCCGGTCAAGTGGTAATCTCGGACTGCATTGTCGCGCTCCCTGCGGGCGCGTGGTTTGAAACAAGGCCAACCCCGGCAGCGCGCCAACCCCGCTTTGTCGCGCTCCCTGCGGGCGCGTGGTTTGAAACACCTGATTTTGAGACATCAGAAAATCTTGGAAAGGTCGCGCTCCCTGCGGGCGCGTGGTTTGAAACACGAGGTCATCGACCGCAAGGGCTGTTTTGAAAAGGTCGCGCTCCCTGCGGGCGCGTGGTTTGAAACTTGGTGGTCTACGCCTCCACACCGAACGAAGCCGCGTCGCGCTCCCTGCGGGCGCGTGGTTTGAAACACGATGATGTAATACGCGGCTCCGCGCTGGCCTATGTCGCGCTCCCTGCGGGCGCGTGGTTTGAAACCCGCTACTTAATGAGGAGACGCCCTTCACGCCCAGGTCGCGCTCCCTGCGGGCGCGTGGTTTGAAACGTGAACCCGGAAACCGGCACCCGCTATACATGGGGTCGCGCTCCCTGCGGGCGCGTGGTTTGAAACCGGTTGGCTTTTGCGAGTTGTGCGACACTCCTCTGTCGCGCTCCCTGCGGGCGCGTGGTTTGAAACTCAGCTTAAGGGAGTCCTCTATGCAATTGGTAAGGTCGCGCTCCCTGCGGGCGCGTGGTTTGAAACCTTCGGTGAGGACGTTGGCGGGCAGCTTATCACGCGTCGCGCTCCCTGCGGGCGCGTGGTTTGAAACCGTATCGATCCTCCAGCATCGTCCGGTACTGCTGTCGCGCTCCCTGCGGGCGCGTGGTTTGAAACGAGCAAGCTGCCAATGCTTGGTCTGGGCTTTGGTGTCGCGCTCCCTGCGGGCGCGTGGTTTGAAACCAAGTAACTACAGTTCACACAAAGCAGAGTGAGGGGTCGCGCTCCCTGCGGGCGCGTGGTTTGAAACCTCTCCGCGACACGCCGCCAGGCGGACGTCTTCGTCGCGCTCCCTGCGGGCGCGTGGTTTGAAACCATACAGGGAGATGAAGGGCAAGACGGTATCAACGTCGCGCTCCCTGCGGGCGCGTGGTTTGAAACTGGGTGCGCTGTCCTTCCTGCGGCACCTATCATGGTCGCGCTCCCTGCGGGCGCGTGGTTTGAAACTTGCGCTTCTTGGTGGAGCCGCCGCCGGTTGTACGTCGCGCTCCCTGCGGGCGCGTGGTTTGAAACCTTACCCAGTTTGCGCTGTTGTCGTCCTATCCGCAGGTCGCGCTCCCTGCGGGCGCGTGGTTTGAAACAAGGTCTACTTTAAGCAGGAATACGAGCTTGAAAGTCGCGCTCCCTGCGGGCGCGTGGTTTGAAACGCGTAAAGCCATGAGAAAGGTCTTTTGCTGGTCTCGTCGCGCTCCCTGCGGGCGCGTGGTTTGAAACTGGACAAAGCGGGCATGCGCACTCTTGGAGAGATGTCGCGCTCCCTGCGGGCGCGTGGTTTGAAACAGCCGCGACAGGATGGGAGAATGAGTCTTTCGGCAGTCGCGCTCCCTGCGGGCGCGTGGTTTGAAACTGGCGGCTCCTTAGAGCGGAGGCCAGCTAAGCCCAAGTCGCGCTCCCTGCGGGCGCGTGGTTTGAAACCAAGAATGAAGCCATCAAACTCCTGACAGAGGATGTCGCGCTCCCTGCGGGCGCGTGGTTTGAAACAAGCCCCAGATGGACGATCGGGGTAATGAAAAGGTCGCGCTCCCTGCGGGCGCGTGGTTTGAAACGTGACACCCAAGGCCGTTGCAGACGCAAAAGGTCGCGCTCCCTGCGGGCGCGTGGTTTGAAACATTCGAGGTCAAAGAACGCGCTGGACGTGTTGGGCGTCGCGCTCCTTGCGAGCGCGTGGTTTGAAAC

>NZ_CP040751|1|1|1474048-1475999|PILER-CR
GTCGCGCTCCCTGCGGGCGCGTGGTTTGAAAC	ATTCGTGATCCTGAGGCAGATGGAGAGGTAGGT
GTCGCGCTCCCTGCGGGCGCGTGGTTTGAAAC	CAGGTCCGGTCAAGTGGTAATCTCGGACTGCATT
GTCGCGCTCCCTGCGGGCGCGTGGTTTGAAAC	AAGGCCAACCCCGGCAGCGCGCCAACCCCGCTTT
GTCGCGCTCCCTGCGGGCGCGTGGTTTGAAAC	ACCTGATTTTGAGACATCAGAAAATCTTGGAAAG
GTCGCGCTCCCTGCGGGCGCGTGGTTTGAAAC	ACGAGGTCATCGACCGCAAGGGCTGTTTTGAAAAG
GTCGCGCTCCCTGCGGGCGCGTGGTTTGAAAC	TTGGTGGTCTACGCCTCCACACCGAACGAAGCCGC
GTCGCGCTCCCTGCGGGCGCGTGGTTTGAAAC	ACGATGATGTAATACGCGGCTCCGCGCTGGCCTAT
GTCGCGCTCCCTGCGGGCGCGTGGTTTGAAAC	CCGCTACTTAATGAGGAGACGCCCTTCACGCCCAG
GTCGCGCTCCCTGCGGGCGCGTGGTTTGAAAC	GTGAACCCGGAAACCGGCACCCGCTATACATGGG
GTCGCGCTCCCTGCGGGCGCGTGGTTTGAAAC	CGGTTGGCTTTTGCGAGTTGTGCGACACTCCTCT
GTCGCGCTCCCTGCGGGCGCGTGGTTTGAAAC	TCAGCTTAAGGGAGTCCTCTATGCAATTGGTAAG
GTCGCGCTCCCTGCGGGCGCGTGGTTTGAAAC	CTTCGGTGAGGACGTTGGCGGGCAGCTTATCACGC
GTCGCGCTCCCTGCGGGCGCGTGGTTTGAAAC	CGTATCGATCCTCCAGCATCGTCCGGTACTGCT
GTCGCGCTCCCTGCGGGCGCGTGGTTTGAAAC	GAGCAAGCTGCCAATGCTTGGTCTGGGCTTTGGT
GTCGCGCTCCCTGCGGGCGCGTGGTTTGAAAC	CAAGTAACTACAGTTCACACAAAGCAGAGTGAGGG
GTCGCGCTCCCTGCGGGCGCGTGGTTTGAAAC	CTCTCCGCGACACGCCGCCAGGCGGACGTCTTC
GTCGCGCTCCCTGCGGGCGCGTGGTTTGAAAC	CATACAGGGAGATGAAGGGCAAGACGGTATCAAC
GTCGCGCTCCCTGCGGGCGCGTGGTTTGAAAC	TGGGTGCGCTGTCCTTCCTGCGGCACCTATCATG
GTCGCGCTCCCTGCGGGCGCGTGGTTTGAAAC	TTGCGCTTCTTGGTGGAGCCGCCGCCGGTTGTAC
GTCGCGCTCCCTGCGGGCGCGTGGTTTGAAAC	CTTACCCAGTTTGCGCTGTTGTCGTCCTATCCGCAG
GTCGCGCTCCCTGCGGGCGCGTGGTTTGAAAC	AAGGTCTACTTTAAGCAGGAATACGAGCTTGAAA
GTCGCGCTCCCTGCGGGCGCGTGGTTTGAAAC	GCGTAAAGCCATGAGAAAGGTCTTTTGCTGGTCTC
GTCGCGCTCCCTGCGGGCGCGTGGTTTGAAAC	TGGACAAAGCGGGCATGCGCACTCTTGGAGAGAT
GTCGCGCTCCCTGCGGGCGCGTGGTTTGAAAC	AGCCGCGACAGGATGGGAGAATGAGTCTTTCGGCA
GTCGCGCTCCCTGCGGGCGCGTGGTTTGAAAC	TGGCGGCTCCTTAGAGCGGAGGCCAGCTAAGCCCAA
GTCGCGCTCCCTGCGGGCGCGTGGTTTGAAAC	CAAGAATGAAGCCATCAAACTCCTGACAGAGGAT
GTCGCGCTCCCTGCGGGCGCGTGGTTTGAAAC	AAGCCCCAGATGGACGATCGGGGTAATGAAAAG
GTCGCGCTCCCTGCGGGCGCGTGGTTTGAAAC	GTGACACCCAAGGCCGTTGCAGACGCAAAAG
GTCGCGCTCCCTGCGGGCGCGTGGTTTGAAAC	ATTCGAGGTCAAAGAACGCGCTGGACGTGTTGGGC
GTCGCGCTCCTTGCGAGCGCGTGGTTTGAAAC

>NZ_CP040751|1|1|1474048-1475999|CRISPRCasFinder
GTCGCGCTCCCTGCGGGCGCGTGGTTTGAAAC	ATTCGTGATCCTGAGGCAGATGGAGAGGTAGGT
GTCGCGCTCCCTGCGGGCGCGTGGTTTGAAAC	CAGGTCCGGTCAAGTGGTAATCTCGGACTGCATT
GTCGCGCTCCCTGCGGGCGCGTGGTTTGAAAC	AAGGCCAACCCCGGCAGCGCGCCAACCCCGCTTT
GTCGCGCTCCCTGCGGGCGCGTGGTTTGAAAC	ACCTGATTTTGAGACATCAGAAAATCTTGGAAAG
GTCGCGCTCCCTGCGGGCGCGTGGTTTGAAAC	ACGAGGTCATCGACCGCAAGGGCTGTTTTGAAAAG
GTCGCGCTCCCTGCGGGCGCGTGGTTTGAAAC	TTGGTGGTCTACGCCTCCACACCGAACGAAGCCGC
GTCGCGCTCCCTGCGGGCGCGTGGTTTGAAAC	ACGATGATGTAATACGCGGCTCCGCGCTGGCCTAT
GTCGCGCTCCCTGCGGGCGCGTGGTTTGAAAC	CCGCTACTTAATGAGGAGACGCCCTTCACGCCCAG
GTCGCGCTCCCTGCGGGCGCGTGGTTTGAAAC	GTGAACCCGGAAACCGGCACCCGCTATACATGGG
GTCGCGCTCCCTGCGGGCGCGTGGTTTGAAAC	CGGTTGGCTTTTGCGAGTTGTGCGACACTCCTCT
GTCGCGCTCCCTGCGGGCGCGTGGTTTGAAAC	TCAGCTTAAGGGAGTCCTCTATGCAATTGGTAAG
GTCGCGCTCCCTGCGGGCGCGTGGTTTGAAAC	CTTCGGTGAGGACGTTGGCGGGCAGCTTATCACGC
GTCGCGCTCCCTGCGGGCGCGTGGTTTGAAAC	CGTATCGATCCTCCAGCATCGTCCGGTACTGCT
GTCGCGCTCCCTGCGGGCGCGTGGTTTGAAAC	GAGCAAGCTGCCAATGCTTGGTCTGGGCTTTGGT
GTCGCGCTCCCTGCGGGCGCGTGGTTTGAAAC	CAAGTAACTACAGTTCACACAAAGCAGAGTGAGGG
GTCGCGCTCCCTGCGGGCGCGTGGTTTGAAAC	CTCTCCGCGACACGCCGCCAGGCGGACGTCTTC
GTCGCGCTCCCTGCGGGCGCGTGGTTTGAAAC	CATACAGGGAGATGAAGGGCAAGACGGTATCAAC
GTCGCGCTCCCTGCGGGCGCGTGGTTTGAAAC	TGGGTGCGCTGTCCTTCCTGCGGCACCTATCATG
GTCGCGCTCCCTGCGGGCGCGTGGTTTGAAAC	TTGCGCTTCTTGGTGGAGCCGCCGCCGGTTGTAC
GTCGCGCTCCCTGCGGGCGCGTGGTTTGAAAC	CTTACCCAGTTTGCGCTGTTGTCGTCCTATCCGCAG
GTCGCGCTCCCTGCGGGCGCGTGGTTTGAAAC	AAGGTCTACTTTAAGCAGGAATACGAGCTTGAAA
GTCGCGCTCCCTGCGGGCGCGTGGTTTGAAAC	GCGTAAAGCCATGAGAAAGGTCTTTTGCTGGTCTC
GTCGCGCTCCCTGCGGGCGCGTGGTTTGAAAC	TGGACAAAGCGGGCATGCGCACTCTTGGAGAGAT
GTCGCGCTCCCTGCGGGCGCGTGGTTTGAAAC	AGCCGCGACAGGATGGGAGAATGAGTCTTTCGGCA
GTCGCGCTCCCTGCGGGCGCGTGGTTTGAAAC	TGGCGGCTCCTTAGAGCGGAGGCCAGCTAAGCCCAA
GTCGCGCTCCCTGCGGGCGCGTGGTTTGAAAC	CAAGAATGAAGCCATCAAACTCCTGACAGAGGAT
GTCGCGCTCCCTGCGGGCGCGTGGTTTGAAAC	AAGCCCCAGATGGACGATCGGGGTAATGAAAAG
GTCGCGCTCCCTGCGGGCGCGTGGTTTGAAAC	GTGACACCCAAGGCCGTTGCAGACGCAAAAG
GTCGCGCTCCCTGCGGGCGCGTGGTTTGAAAC	ATTCGAGGTCAAAGAACGCGCTGGACGTGTTGGGC
GTCGCGCTCCTTGCGAGCGCGTGGTTTGAAAC

>NZ_CP040751|1|1|1474048-1475999|CRT
GTCGCGCTCCCTGCGGGCGCGTGGTTTGAAAC	ATTCGTGATCCTGAGGCAGATGGAGAGGTAGGT
GTCGCGCTCCCTGCGGGCGCGTGGTTTGAAAC	CAGGTCCGGTCAAGTGGTAATCTCGGACTGCATT
GTCGCGCTCCCTGCGGGCGCGTGGTTTGAAAC	AAGGCCAACCCCGGCAGCGCGCCAACCCCGCTTT
GTCGCGCTCCCTGCGGGCGCGTGGTTTGAAAC	ACCTGATTTTGAGACATCAGAAAATCTTGGAAAG
GTCGCGCTCCCTGCGGGCGCGTGGTTTGAAAC	ACGAGGTCATCGACCGCAAGGGCTGTTTTGAAAAG
GTCGCGCTCCCTGCGGGCGCGTGGTTTGAAAC	TTGGTGGTCTACGCCTCCACACCGAACGAAGCCGC
GTCGCGCTCCCTGCGGGCGCGTGGTTTGAAAC	ACGATGATGTAATACGCGGCTCCGCGCTGGCCTAT
GTCGCGCTCCCTGCGGGCGCGTGGTTTGAAAC	CCGCTACTTAATGAGGAGACGCCCTTCACGCCCAG
GTCGCGCTCCCTGCGGGCGCGTGGTTTGAAAC	GTGAACCCGGAAACCGGCACCCGCTATACATGGG
GTCGCGCTCCCTGCGGGCGCGTGGTTTGAAAC	CGGTTGGCTTTTGCGAGTTGTGCGACACTCCTCT
GTCGCGCTCCCTGCGGGCGCGTGGTTTGAAAC	TCAGCTTAAGGGAGTCCTCTATGCAATTGGTAAG
GTCGCGCTCCCTGCGGGCGCGTGGTTTGAAAC	CTTCGGTGAGGACGTTGGCGGGCAGCTTATCACGC
GTCGCGCTCCCTGCGGGCGCGTGGTTTGAAAC	CGTATCGATCCTCCAGCATCGTCCGGTACTGCT
GTCGCGCTCCCTGCGGGCGCGTGGTTTGAAAC	GAGCAAGCTGCCAATGCTTGGTCTGGGCTTTGGT
GTCGCGCTCCCTGCGGGCGCGTGGTTTGAAAC	CAAGTAACTACAGTTCACACAAAGCAGAGTGAGGG
GTCGCGCTCCCTGCGGGCGCGTGGTTTGAAAC	CTCTCCGCGACACGCCGCCAGGCGGACGTCTTC
GTCGCGCTCCCTGCGGGCGCGTGGTTTGAAAC	CATACAGGGAGATGAAGGGCAAGACGGTATCAAC
GTCGCGCTCCCTGCGGGCGCGTGGTTTGAAAC	TGGGTGCGCTGTCCTTCCTGCGGCACCTATCATG
GTCGCGCTCCCTGCGGGCGCGTGGTTTGAAAC	TTGCGCTTCTTGGTGGAGCCGCCGCCGGTTGTAC
GTCGCGCTCCCTGCGGGCGCGTGGTTTGAAAC	CTTACCCAGTTTGCGCTGTTGTCGTCCTATCCGCAG
GTCGCGCTCCCTGCGGGCGCGTGGTTTGAAAC	AAGGTCTACTTTAAGCAGGAATACGAGCTTGAAA
GTCGCGCTCCCTGCGGGCGCGTGGTTTGAAAC	GCGTAAAGCCATGAGAAAGGTCTTTTGCTGGTCTC
GTCGCGCTCCCTGCGGGCGCGTGGTTTGAAAC	TGGACAAAGCGGGCATGCGCACTCTTGGAGAGAT
GTCGCGCTCCCTGCGGGCGCGTGGTTTGAAAC	AGCCGCGACAGGATGGGAGAATGAGTCTTTCGGCA
GTCGCGCTCCCTGCGGGCGCGTGGTTTGAAAC	TGGCGGCTCCTTAGAGCGGAGGCCAGCTAAGCCCAA
GTCGCGCTCCCTGCGGGCGCGTGGTTTGAAAC	CAAGAATGAAGCCATCAAACTCCTGACAGAGGAT
GTCGCGCTCCCTGCGGGCGCGTGGTTTGAAAC	AAGCCCCAGATGGACGATCGGGGTAATGAAAAG
GTCGCGCTCCCTGCGGGCGCGTGGTTTGAAAC	GTGACACCCAAGGCCGTTGCAGACGCAAAAG
GTCGCGCTCCCTGCGGGCGCGTGGTTTGAAAC	ATTCGAGGTCAAAGAACGCGCTGGACGTGTTGGGC
GTCGCGCTCCTTGCGAGCGCGTGGTTTGAAAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP040751.1\|WP_147820329.1\|1465619_1466009_-\|NUDIX-domain-containing-protein	unknown	unknown	gnl\|CDD\|239517
NZ_CP040751.1\|WP_147820335.1\|1468692_1470774_+\|hypothetical-protein	cas8c	mkCas0173_cas8c_CAS-I-C	gnl\|CDD\|273839
NZ_CP040751.1\|WP_147820322.1\|1463523_1463772_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040751.1\|WP_147820347.1\|1479483_1480281_-\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|378964
NZ_CP040751.1\|WP_147820333.1\|1467167_1467770_-\|recombinase-family-protein	unknown	unknown	gnl\|CDD\|239737
NZ_CP040751.1\|WP_147820331.1\|1466088_1467018_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040751.1\|WP_147820341.1\|1476127_1477933_-\|tyrosine-type-recombinase/integrase	unknown	unknown	gnl\|CDD\|271184
NZ_CP040751.1\|WP_147820324.1\|1464175_1464649_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040751.1\|WP_147820339.1\|1471670_1473869_+\|CRISPR-associated-protein	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|350688
NZ_CP040751.1\|WP_147822690.1\|1487532_1489074_-\|ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|224053
NZ_CP040751.1\|WP_147820349.1\|1480373_1483016_-\|cytochrome-C	unknown	unknown	gnl\|CDD\|224190
NZ_CP040751.1\|WP_147820327.1\|1464784_1465627_-\|HNH-endonuclease	unknown	unknown	gnl\|CDD\|238038
NZ_CP040751.1\|WP_147820337.1\|1470783_1471668_+\|CRISPR-associated-protein	cas7b	pfam05107_cas7b_CAS-I-B:CAS-I-C	gnl\|CDD\|377458
NZ_CP040751.1\|WP_147822689.1\|1486377_1487490_-\|inner-membrane-translocator	unknown	unknown	gnl\|CDD\|226669
NZ_CP040751.1\|WP_147822688.1\|1468106_1468700_+\|CRISPR-associated-protein-Cas5	cas5	cd09651_cas5_CAS-I-C	gnl\|CDD\|187782
NZ_CP040751.1\|WP_147820355.1\|1485283_1486342_-\|substrate-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|380647
NZ_CP040751.1\|WP_147820351.1\|1483019_1484078_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040751.1\|WP_147820343.1\|1478253_1478529_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040751.1\|WP_147820345.1\|1478566_1479406_-\|methyltransferase-domain-containing-protein	unknown	unknown	gnl\|CDD\|379312
NZ_CP040751.1\|WP_147820353.1\|1484217_1485204_-\|glucokinase	unknown	unknown	gnl\|CDD\|367143

Protein	Function_ID	Function_description	E-value
NZ_CP040751.1\|WP_147820329.1\|1465619_1466009_-\|NUDIX-domain-containing-protein	gnl\|CDD\|239517	cd03425, MutT_pyrophosphohydrolase, The MutT pyrophosphohydrolase is a prototypical Nudix hydrolase that catalyzes the hydrolysis of nucleoside and deoxynucleoside triphosphates (NTPs and dNTPs) by substitution at a beta-phosphorus to yield a nucleotide monophosphate (NMP) and inorganic pyrophosphate (PPi). This enzyme requires two divalent cations for activity; one coordinates the phosphoryl groups of the NTP/dNTP substrate, and the other coordinates to the enzyme. It also contains the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as metal binding and catalytic site. MutT pyrophosphohydrolase is important in preventing errors in DNA replication by hydrolyzing mutagenic nucleotides such as 8-oxo-dGTP (a product of oxidative damage), which can mispair with template adenine during DNA replication, to guanine nucleotides.	6.12551e-46
NZ_CP040751.1\|WP_147820335.1\|1468692_1470774_+\|hypothetical-protein	gnl\|CDD\|273839	TIGR01863, CRISPR-associated_protein_CT1133_family, CRISPR-associated protein Cas8c/Csd1, subtype I-C/DVULG. CRISPR loci appear to be mobile elements with a wide host range. This model represents a protein that tends to be found near CRISPR repeats of the DVULG subtype of CRISPR/Cas locus. We designate this family Csd1 (CRISPR/Cas Subtype DVULG protein 1). The species range for this subtype, so far, is exclusively bacterial and mesophilic, although CRISPR loci in general are particularly common among archaea and thermophilic bacteria. In a few species (Xanthomonas axonopodis pv. citri str. 306 and Streptococcus mutans UA159), homology to this protein family is split across two tandem genes; the trusted cutoff to this family is set low enough to capture at least the longer of the two.	0.00615149
NZ_CP040751.1\|WP_147820347.1\|1479483_1480281_-\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|378964	pfam12833, HTH_18, Helix-turn-helix domain.	3.05118e-17
NZ_CP040751.1\|WP_147820333.1\|1467167_1467770_-\|recombinase-family-protein	gnl\|CDD\|239737	cd03768, SR_ResInv, Serine Recombinase (SR) family, Resolvase and Invertase subfamily, catalytic domain; members contain a C-terminal DNA binding domain. Serine recombinases catalyze site-specific recombination of DNA molecules by a concerted, four-strand cleavage and rejoining mechanism which involves a transient phosphoserine linkage between DNA and the enzyme. They are functionally versatile and include resolvases, invertases, integrases, and transposases. Resolvases and invertases affect resolution or inversion and comprise a major phylogenic group. Resolvases (e.g. Tn3, gamma-delta, and Tn5044) normally recombine two sites in direct repeat causing deletion of the DNA between the sites. Invertases (e.g. Gin and Hin) recombine sites in inverted repeat to invert the DNA between the sites. Cointegrate resolution with gamma-delta resolvase requires the formation of a synaptosome of three resolvase dimers bound to each of two res sites on the DNA. Also included in this subfamily are some putative integrases including a sequence from bacteriophage phi-FC1.	6.54469e-51
NZ_CP040751.1\|WP_147820353.1\|1484217_1485204_-\|glucokinase	gnl\|CDD\|367143	pfam02685, Glucokinase, Glucokinase. This is a family of glucokinases or glucose kinases EC:2.7.1.2. These enzymes phosphorylate glucose using ATP as a donor to give glucose-6-phosphate and ADP.	2.47749e-119
NZ_CP040751.1\|WP_147820341.1\|1476127_1477933_-\|tyrosine-type-recombinase/integrase	gnl\|CDD\|271184	cd01184, INT_C_like_1, Uncharacterized site-specific tyrosine recombinase, C-terminal catalytic domain. Tyrosine recombinase (integrase) belongs to a DNA breaking-rejoining enzyme superfamily. The catalytic domain containing six conserved active site residues. The recombination reaction involves cleavage of a single strand of a DNA duplex by nucleophilic attack of a conserved tyrosine to give a 3' phosphotyrosyl protein-DNA adduct. In the second rejoining step, a terminal 5' hydroxyl attacks the covalent adduct to release the enzyme and generate duplex DNA. Many DNA breaking-rejoining enzymes also have N-terminal domains, which show little sequence or structure similarity.	1.07719e-51
NZ_CP040751.1\|WP_147820339.1\|1471670_1473869_+\|CRISPR-associated-protein	gnl\|CDD\|350688	cd17930, DEXHc_cas3, DEXH/Q-box helicase domain of Cas3. CRISPR-associated (Cas) 3 is a nuclease-helicase responsible for degradation of dsDNA. The two enzymatic units of Cas3, a histidine-aspartate (HD) nuclease and a Superfamily 2 (SF2) helicase, may be expressed from separate genes as Cas3' (SF2 helicase) and Cas3'' (HD nuclease) or may be fused as a single HD-SF2 polypeptide. The nucleolytic activity of most Cas3 enzymes is transition metal ion-dependent. Cas3 is a member of the DEAD-like helicase superfamily, a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.	2.14085e-20
NZ_CP040751.1\|WP_147820349.1\|1480373_1483016_-\|cytochrome-C	gnl\|CDD\|224190	COG1271, CydA, Cytochrome bd-type quinol oxidase, subunit 1 [Energy production and conversion].	1.99363e-11
NZ_CP040751.1\|WP_147820327.1\|1464784_1465627_-\|HNH-endonuclease	gnl\|CDD\|238038	cd00085, HNHc, HNH nucleases; HNH endonuclease signature which is found in viral, prokaryotic, and eukaryotic proteins. The alignment includes members of the large group of homing endonucleases, yeast intron 1 protein, MutS, as well as bacterial colicins, pyocins, and anaredoxins.	3.04905e-09
NZ_CP040751.1\|WP_147820337.1\|1470783_1471668_+\|CRISPR-associated-protein	gnl\|CDD\|377458	pfam05107, Cas_Cas7, CRISPR-associated protein Cas7. CRISPR-associated protein Cas7 is one of the components of the type I-B cascade-like antiviral defense complex. In Haloferax volcanii, Cas5, Cas6 and Cas7 form a small complex that aids the stability of CRISPR-derived RNA.	4.13782e-57
NZ_CP040751.1\|WP_147822689.1\|1486377_1487490_-\|inner-membrane-translocator	gnl\|CDD\|226669	COG4214, XylH, ABC-type xylose transport system, permease component [Carbohydrate transport and metabolism].	8.13093e-102
NZ_CP040751.1\|WP_147822688.1\|1468106_1468700_+\|CRISPR-associated-protein-Cas5	gnl\|CDD\|187782	cd09651, Cas5_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas5 is a RAMP superfamily protein; Subunit of the Cascade complex; in subtype I-C this protein might be the endoribonuclease that generates crRNAs; also known as DevS family.	1.50494e-22
NZ_CP040751.1\|WP_147822690.1\|1487532_1489074_-\|ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|224053	COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism].	0
NZ_CP040751.1\|WP_147820355.1\|1485283_1486342_-\|substrate-binding-domain-containing-protein	gnl\|CDD\|380647	cd19992, PBP1_ABC_xylose_binding-like, periplasmic xylose-like sugar-binding component of the ABC-type transport systems. Periplasmic xylose-binding component of the ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type 1 periplasmic binding protein (PBP1) superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes a transition from an open to a closed conformational state upon ligand binding. Moreover, the periplasmic xylose-binding protein is homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR.	4.98067e-99
NZ_CP040751.1\|WP_147820345.1\|1478566_1479406_-\|methyltransferase-domain-containing-protein	gnl\|CDD\|379312	pfam13649, Methyltransf_25, Methyltransferase domain. This family appears to be a methyltransferase domain.	3.84302e-16

>NZ_CP040751.1|WP_147820339.1|1471670_1473869_+|CRISPR-associated-protein
MTYYAHSGRTAQKGRPAVSPHPYADHVRAVIKQAVRSATEMVQYLNDDEQRVSLVNAVEQAARFHDLGKLGKQNNDMLSRTYGEDQPSRLPVNHVDAGVAHLLAEEAYDSALLTWSHHRGLPDRIAETCRHFPFRDAVIREEVDSELTILLDRHFKCVPNDGSRSGGTLPFAAKASLDWRFALSCLVDADHGDTATHFHSERIPEFRPTLRAEERLARLDQFIERLSATAEQCERNSVRASIYQSVRNASANMGVVACDSPVGTGKTLSIMGHLLKVAAVNGLRRIFVVLPFTNIIDQAVAVYREALVLEGEDPEQVVSAHHHRAEFESPESRSLAYLWRAPIVVVTAVQFFETMAAASTGALRKLHEFPGAAVFVDEAHAAMPADLWLPAWGWVRASCERWNCHWVLASGSLTRFWELQPFRSVEDLLGISHVEVPELVSSDVRSKAVSVEKGRVRYESLPQSLGLDDLANLVMDTPGPRVVVMNTVRGAAKLALRLSSILGREAVEHLSTALCPRDRASTLGRVRERLDAGDENWTLVATSCVEAGVDISFRNGFRERFGLCNLLQLGGRVCREARAVGIVYDFVLKAEEVFPHPGAQKPALALKTLVAQGKVGPAYCKEALDMEIKLSGEREECSRGYAIAGLDFNGEFKEVQRRFRIIDSDTRMVVIDRPTVESLQQGRHVSKSTLQDVSVQIWSNQIEKLPVQDVDGYPDLYVWNGAYDEFLGYLAE
>NZ_CP040751.1|WP_147820337.1|1470783_1471668_+|CRISPR-associated-protein
MSTDKYLNKITGLLLIEAVNSNPNGDPDRESDPRHRPNGIGEISPVSFKAKVRGLVGDKEGPVWGEFSHRNGLAADNFEILESKGRSIGELRRLSTDDLLSRFWDVRIFGTSLLEKEKGETEKDGETYQQHIHTGALQFGTGLSLDPVKIIRNTTTIKRGVQEGKDRGMAPLAYRVVEYGLYAMPFFLNPTVAGRTLCTDEDIQLLLDVIPYAYSHTASYIRPHVNIRHAWVAEHKNPLGSCPDWKILEALTPKRTNPKDANLPAESIEEYTVPSGLPEEIASKLAGIRDIVNE
>NZ_CP040751.1|WP_147820335.1|1468692_1470774_+|hypothetical-protein
MFEFFQTADALEKAGINVRQRDASLKPCPNKPRVIVYLNEDGAPVGFDLAERPGNGNAMIERWAPDNHKAFPTFAVDPVFVAESAHLSSLKKVFKDNDTSSKVIRGAVNGLKESAVPAWSERLAKKLNRQFTMGESLLESASALSEEAAPFIELVRRAALIDYYQFQQFLCESIMSGLAEFPLGWRYHVDACFGQTDKSVTPNTLLVSLELDDWHVYAYPANSPAMFDILNDGILGASASQTGEVDAFGLPLEGYEAPMPKILLPKSGEKPMRSMFSDVPANFRYHRAGADSFPVGSQSRLRMLAAAKWITAPEREGRTWAFLTQKIKVGRSEIQPTIVVIAPQDMPEVPPAFGALFAPLSERAKEVAEVTKYGEVAKIVADAISGAWQGDLSVPINVSVITSYDKGRYKLLMSESYTAEHMLESARRWNEGCANIPLLRYRVQAKKKAYSISPVTPAPSEIISLLSNVWLRSGTEVRATRQVAQELPALLLLASGQQEHDIAVALLTKHVSDQEAVLIALGPTLLRNRELVLPTSDRNAYHHLEILPSILGLLLLKAGRKMEEYMQDSYFLVGRLMSLADTLHEQYCKGVRGGDLPSSLLGNSLMRVALANPVDAFDQLADRILVYHSWARTNRSEESRLAKWTLGLFSEVSEALKQKGVPDMVNSTGKAEMLLGYLAGFPRKNNNSTDTNA
>NZ_CP040751.1|WP_147822688.1|1468106_1468700_+|CRISPR-associated-protein-Cas5
MFTRPDTGSSPVSYPVPTYSAVKGIFETILMLRQASVVPTKVEICAPVAFHSYTTNYLGPARQSGKNGALQIPATVLTDVRYRLYARAYHDDRPLPYSKNGKEGGSRCSHGGHAYRDIFNRRIDSGQSFRVPFLGWKEFTVDYFGPFRNGTTVQDDINLFIPSLFKSFCKDGRGKATQWKPVFMNNVEIRGGVLHYV
>NZ_CP040751.1|WP_147820333.1|1467167_1467770_-|recombinase-family-protein
MSIRSLPMIIGYARVSTHEQDPTIQVEAIRKEYPEALVHEEQASASSRNGRPRLETILQTIREGDTLVVLKLDRLARNVLDLLQIVEELEAKKASLVILDQKIDTNTSAGRCFLQMLGVFAEFETNLRRERQMAGIAKAKAEGKYKGRPATANRDAIGEMLANGSSHASIAKILGVSTKTVQRVRREIESKDYEGSPMDH
>NZ_CP040751.1|WP_147820331.1|1466088_1467018_-|hypothetical-protein
MADLDIKLPYHEQTYTIRLATGYLSIIDDSREQPERTSRQEQSTPKEPVARARSRFTKKSQLSLQKALNELRPHCDPTHYIVLSFRGRSSENPKQWKRDISNLRRRVVSCYPASWFFWRLIPEKQRGIPVVHLLGSLGDDLSSDVLENQLNAWWQKIIGCDPRTHDGCVSVQEVTETPERLKIKMSAPEPSTHHTSFYEAWGKLGKRWDVWNRKMIPFCPVEELTITHECHHEVKRVLLDTVEKEIADIEAELGNRPEIGRFDQLRESLHAKKEFLGKLHSADDNFMFLQHEQMEFVWKLIREFNAAGE
>NZ_CP040751.1|WP_147820329.1|1465619_1466009_-|NUDIX-domain-containing-protein
MVTVTAAVLELDGKILIARRTDKYLGGLWEFPGGKLEPGEDPKQCLERELFEEFGVKTSVGSHVVTHVHEYEHVTVELISYWVKHLDGEFELRDHDQMEWVGPHEFEMYDMAPADVPTVEAILKERLHV
>NZ_CP040751.1|WP_147820327.1|1464784_1465627_-|HNH-endonuclease
MFDPGLGRGQIINNQAIREIFGCSPQGGMRRSLTTNTLVIVSDKTRGVYDDRWEECVLHYTGMGQRGDQELAFAQNKTLAESSTNGVDIHLFEALVPQQYIYQGRVKLVEDPYQEQQPDVDGIQREVWVFPVQLESGEEVVKPPHEALEMQFERREKEASKLAPGDLLRRAKAANSKPGSRGSVTKQYSRDPHVAALVKMIAAGCCHLCGEPAPFQKSTGEPYLEVHHVEWLSKGGDDALHNVVALCPNCHRRMHVLDRADDRRKLASVAEGNEVRANLL
>NZ_CP040751.1|WP_147820324.1|1464175_1464649_+|hypothetical-protein
MLFSFSAYQDRTIFRPVVRFARRYFNGVCNLIYWFPVIWRDRCFDHHYLFAILHHKLANMERFFWTESLAANAHKYARQIHICTLALDRILKDGYLAEKYEDHFRKWGDFRNLRTEKEQALYRKELRGLMEREEMLIKQDVDYVLRLIGKHGRSWWD
>NZ_CP040751.1|WP_147820322.1|1463523_1463772_+|hypothetical-protein
MSGFLTGSSRQDRARQIGSFESLSFDMPDFVLLLCGKIPLLSILENGHFVELLLFLIGFLFVGHESSSPGKGFSHHQATESA
>NZ_CP040751.1|WP_147820341.1|1476127_1477933_-|tyrosine-type-recombinase/integrase
MQAFFTSEPITSCSRNRNLDDFWTIRSEIVQKKRDVMPSYLTLHGTTYHFRFFVPEALQPVIGQKVVKMSLRTGRKRLAKRKAGQLASAARKIILKAKESEFMDMQQLQRSLRTYLKYLLDMDDVLRAVPVEIENDESHAELFFDTIQQGLRKSDNASIKHFVDEFLSMTGHASLSENSLEYNLLARQMHKILVQFAHVGKLRAEGDVIAEQDYLDKLFPDAVSDGQTHAAAPTSTGRQQASESKDVLIEGLIEAFTGATDTTPETRDKYNTTIREFLAITSIRNIAEINHPVLRDYIEVLKSLPPNYAKLYAETPVLEVAQMSHEKTVTARTVNDKIGIMGRFFKWAINQGYMEINYADGKRLPKGKPQHSTHEPYTIDDLRKMFNALQYVKDSFRSPYQFWMVPLALYTGARQSELAQLRCKDVYQPEEGIWAIRVMPDDDDESSSVKTVNAIRTIPLHPVLTEQLNFHAFVRRVRRAGNDRVFPEIKPRQGKYGKVVSQWFNDRFKKNLDLQPPRSGFKKDFHSFRNTFIDAAKQARVEISMIEETVGHASALGMRQQSMSGDYYANEYSERIRYEELMLKVNFDIDLSHLKKSKYTK
>NZ_CP040751.1|WP_147820343.1|1478253_1478529_+|hypothetical-protein
MKQCLMAMLVACVLVLGFAVVAVNAQSGGDVSAACSSCHNLKRVCLMVGSKDKAGWEKTINRMVANGASVGNPGAMAGYLAGLAPGTGPCQ
>NZ_CP040751.1|WP_147820345.1|1478566_1479406_-|methyltransferase-domain-containing-protein
MSRQSLQTIFDITPPQDNFWDGAYKIPWNEPGFSARMLEIHLSQETDLASRKLETIKKQAKWLKDNALRDEVSRILDLGCGPGLYADHFARDRHIYRGIDFSPASIAHARKQTGFPALCEFSEGDVTTTDFGEGYDLAMMIYGELNVFSPDQCRDILARAHAALNTGGTLALELHTVDAVKAAGTAPASWHKADSGLFSPRPYICLQENHWNGEHAVAVQYFHVLDAANGSAATMRSTTKAWSDDELEALLSAAGFRDMRFREDWPKAGEHFRLLTAIK
>NZ_CP040751.1|WP_147820347.1|1479483_1480281_-|helix-turn-helix-domain-containing-protein
MLAFKPQKHLASHVDTLWVTNGPLETRATFEYYPVPTSDVLIILDERTCEIFHCSAATTRGTVTASAGKAYFALRLRPGMGADLFGTWETRRTDATTSLDRLFGIPSDSLGQMLLEAATPRRQADLLFSTLQNQRPGSAGLAHGQLAGRIIETTGGGIPVANVARELGISPRQMERQVRLFTGLTPKGLARSVRLQHCFERLHHGGFANLASLAQDLGYMDQPHFIRDFKSMTGKTPGQYLAGTRMAAHVTDVAVPAPDRPLFQF
>NZ_CP040751.1|WP_147820349.1|1480373_1483016_-|cytochrome-C
MQYPFWELTTFGGGFFIALIAVIHVFLAHFAVGGGLFLPLFEGMARKRGSAPLLAYVRSHTKFFLLVTMVLGGMTGVGIWFTISVLAPQATSTLIHTFVFGWAAEWVCFLAEIVALLIYHYRFEQMSPRNHLIVGWLYFIFAWLSLFLINGIIGFMLTPGQWLETGSFWDGFFNPSFWPSLFFRTFAAATIAGLFGFVTAHRVQDAEARETIYRTCAWWTTIPLLLALACGWWYTSVIPPEALHRLALRASRITRFYSLVPLFAAAVFVLGAVMLVRLPRNLRISVSVALLLLGFGFLGSFEFLREAARKPYLIHGYMYSNQIRPMDMQQYTEAGMLGSSKWVSGKELTEDDMERLGGELFQLQCASCHSVGGPMNDILPLTEKYPVTGMDAKLSGMGTISPMMPLFAGTGQERMALARYIVNTLHGGRPGNIAFAGKDLPLEIPPFDKNKDQYVLLAWNNLGMHCISDSYSEWVLLPPANDIYAQLVKRGDKPQVITKGVTLTYSVEPGFENPAALCSFWDHAQSLFGARPQENVGLCGNGLTGKLKPHEELNCFEAALIPVKPYPASGGFNPYPVFTVRAEDAETGELLAETKTVAPTSTEMGCKNCHGGPWLVDNLAGISQATGRDVLKSHDRLSNTELVASAQSGNPRLCQSCHPDPVLGAEGNPELLNLPAAIHGFHANFLTDRGSEACAFCHPNRPDGPTKCLRGLHAQADIGCVRCHGYLEDHALSLLKHEDGKGKQGAKRLMAHLKARTVESADQVMPRLPWMNEPDCRTCHTDPGTRPDKKTANAFNTWTHDGHALYRNSLDANGNMMCIACHNSPHANYPALNKYGANRDNIAPLQYQGNTRSVGADNNCGVCHLKEVTGNAHHVKTAQN
>NZ_CP040751.1|WP_147820351.1|1483019_1484078_-|hypothetical-protein
MDPTALIPVPDAIPMAWGWFEGLNILTFTLHMILVNVLVGGGFFALYLTLNKRADLAAPITRKLPTVFALVVNFGVAPLLFLQVVYGHFFYSGSVLSAAWWLGVILLLIAGYYALYIHQHKSAADPANRGGYLLAALAVILCVGLVMVNVLTLMLRPDLWVSGVGGSSGTLFNFMDATFAPRFLHFLFASLAVGGLAAALLARFGKERGTTSSEIVQHSGLRLFVTASVLQIASGLWWLVALDRPVLLQFMGDSVPGTALLLVSVALAVLALMAGATRKPVSAAIWTGLTILSMSGVRAVVRNATLEPWFSPGQLQVTGEISPFVFFLVTLVIGLAALAYMLRLAFFASKEG
>NZ_CP040751.1|WP_147820353.1|1484217_1485204_-|glucokinase
MILAGDIGGTKTRLGIFSADRGPDDPVVRQTYPSQEFAGLEDIVRAFLKKHGLSAERASFGVAGPIKQNRAQITNLPWIIDGDRLQRETGIGRVALLNDLEAMAHAVPHLDESMLVTINQGVPVPECTKALVAPGTGLGEVFLTWDGHGRYRPNSSEGGHTEFGPRTELQMELLAYLLEKYDHVSYERVCAGVGIPNLYAFLRDTGKHPEPEALARDLAEAEDQTPVIVRAGLERPEENPICVAVLELFTEILGAEAGNLALKVSCYGGMYIGGGIPPRMPEYIRSPRFLEAFRAKGRLSPMVADMPIHLVTHRDTALMGAACHALGL
>NZ_CP040751.1|WP_147820355.1|1485283_1486342_-|substrate-binding-domain-containing-protein
MLHTFPQAVRTMTVALCAVILAAGLATTAQAKELRIGFLLKTMQEERYRTDKALFMARAEGKGATVLFDSSRNDELVQLRQVEKMLDQGIQVLVLQPVETGTAGSLVKLAHERGVRVVGYDSMLQNGPLDVMVMQDSWAVGELQAKALKKWLLKHRGAVKGNVALIMGRPGDANAEAMSQGMLDFAAKHPDINLVARKSHMDWSPDLARETAETLLLKHRDRIDAFICNNSGLASGVMGALHEQDLDSVDKVFVAGSDADLRNIRMVAQGRQAFEVWKKIKPLAYRAADIAVAMAEQPEKTVKELAPDARAVDNGFAEIPTIITPVVGVDRENLDATVIADGHFTHEEVYGK
>NZ_CP040751.1|WP_147822689.1|1486377_1487490_-|inner-membrane-translocator
MMGFLKENGTLIALVILAAIFGFMDDAFFTPRNITNLARQTTIIGIISVGMTMVIIINGIDLSVGSIVGLSAIMVTLLMQQGMNVWAAILLTLLVAGVLIGLWNGFWVAHYNIPPFIITLGMMTIARGLALTLSNGSSVPVTDPLFPELGGSFISPAYSGILIAAALVFFFLSLFRGVQQKKKYNVTIRAQKIVASSIIAVAGLGLAFWVFTAYRGIPYPVLIFGVIAALGVFILNNTMLGRRIYAIGGNEEAARLSGIRIYRVKLIVYSIITTLSALSGILLASRLNGASPNLGNMFELDAISAVIIGGTSFSGGVGTITGTVIGAFIIGIMNNGMSLLGVETFYQLIIKGLIIILAVWFDVLNKRKSA
>NZ_CP040751.1|WP_147822690.1|1487532_1489074_-|ATP-binding-cassette-domain-containing-protein
MGEVVLEMKNIVKDFPGVRALDDVNFEARAGEVLALVGENGAGKSTLMKVLSGVWPYPTYEGDIFVKGKRCRFRNTREAEAAKVAIIYQELNLIPELTVAENIFLDRQFCSRLGVVNWSRVYAEAQNLLDQLHIKGVNPTDKVSELTVGKQQMVEIAKALSKDAEILVFDEPTSALTDKEVDALFKTIRKLKENGVCMTYISHKMDELEIIADRVAVLRDGKTIGEVTPMSEITMDEIINRMVGRDIKDMFPKMKANRGEKVLEVKNLCLKHPTLPGKQLIKDVSFDAYRGEILGISGLMGSGRSELVSSIFGAYRRGVCGEVHLHGKKLKIKRPQDAIRNGIALVTEDRKALGLVLGQSVLTNMTIGSLETVAHQWGVINKAKERNLARDYIGKLNIKTPGLDVAIDTLSGGNQQKVIVAKWLNTAPKVLILDEPTRGIDIGAKVEIYNLLNKLVEEGVTVIMISSELPEIMGMCHRILVMCEGEIAAELDETEATKELIMEYGTGSKKKGE

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Crispr_ID: NZ_CP040751_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP040751_2

1709474-1709578

Orphan

Consensus_repeat	Method
CGACGCCCAGGCTGCCCTGGATGCCGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP040751_2

>merge|NZ_CP040751|2|1709474-1709578|CRISPRCasFinder
CGACGCCCAGACCGCTGTTGACGACGCCCAGGCTGCCCTGGATGCCGCCGAGGAGAGCGGTGACGAAGCCGCCATCGCCGACGCCCAGGCAGCCCTGGATGCCGC

>NZ_CP040751|2|2|1709474-1709578|CRISPRCasFinder
CGACGCCCAGACCGCTGTTGACGACGC	CCAGGCTGCCCTGGATGCCGCCGAGGAGAGCGGTGACGAAGCCGCCATCGC
CGACGCCCAGGCAGCCCTGGATGCCGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP040751.1\|WP_147820654.1\|1703323_1703635_-\|50S-ribosomal-protein-L21	unknown	unknown	gnl\|CDD\|235510
NZ_CP040751.1\|WP_147820670.1\|1716336_1717128_-\|molybdate-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270257
NZ_CP040751.1\|WP_147820665.1\|1712757_1713492_-\|acyl-ACP-thioesterase	unknown	unknown	gnl\|CDD\|366738
NZ_CP040751.1\|WP_147820669.1\|1715659_1716334_-\|molybdate-ABC-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|226629
NZ_CP040751.1\|WP_147820660.1\|1707720_1708299_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|199889
NZ_CP040751.1\|WP_147822697.1\|1712332_1712761_-\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|379228
NZ_CP040751.1\|WP_147820656.1\|1704256_1704979_-\|ComF-family-protein	unknown	unknown	gnl\|CDD\|223970
NZ_CP040751.1\|WP_147820666.1\|1713577_1714354_-\|transporter-substrate-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|270228
NZ_CP040751.1\|WP_147820659.1\|1706474_1706996_-\|nitroreductase-family-protein	unknown	unknown	gnl\|CDD\|380313
NZ_CP040751.1\|WP_147820658.1\|1705841_1706474_-\|MBL-fold-metallo-hydrolase	unknown	unknown	gnl\|CDD\|293792
NZ_CP040751.1\|WP_147820668.1\|1715003_1715663_-\|ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|213226
NZ_CP040751.1\|WP_147820663.1\|1710210_1711173_+\|tetratricopeptide-repeat-protein	unknown	unknown	gnl\|CDD\|276809
NZ_CP040751.1\|WP_147820661.1\|1708276_1709041_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040751.1\|WP_147820657.1\|1704978_1705596_-\|flavodoxin-family-protein	unknown	unknown	gnl\|CDD\|223728
NZ_CP040751.1\|WP_147820653.1\|1703034_1703304_-\|50S-ribosomal-protein-L27	unknown	unknown	gnl\|CDD\|235464
NZ_CP040751.1\|WP_147820671.1\|1717416_1719189_+\|AAA-domain-containing-protein	unknown	unknown	gnl\|CDD\|226350
NZ_CP040751.1\|WP_147820664.1\|1711287_1712340_+\|HD-domain-containing-protein	unknown	unknown	gnl\|CDD\|225116
NZ_CP040751.1\|WP_147822696.1\|1707173_1707719_+\|sigma-70-family-RNA-polymerase-sigma-factor	unknown	unknown	gnl\|CDD\|182012
NZ_CP040751.1\|WP_147820667.1\|1714375_1714969_-\|NAAT-family-transporter	unknown	unknown	gnl\|CDD\|280149
NZ_CP040751.1\|WP_147820655.1\|1703806_1704235_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP040751.1\|WP_147820654.1\|1703323_1703635_-\|50S-ribosomal-protein-L21	gnl\|CDD\|235510	PRK05573, rplU, 50S ribosomal protein L21; Validated.	6.56917e-47
NZ_CP040751.1\|WP_147820670.1\|1716336_1717128_-\|molybdate-ABC-transporter-substrate-binding-protein	gnl\|CDD\|270257	cd13539, PBP2_AvModA, Substrate binding domain of ModA/WtpA from Azotobacter vinelandii and its closest homologs;the type 2 periplasmic binding protein fold. This subfamily contains domains found in ModA proteins that serve as initial receptors in the ABC transport of molybdate in eubacteria and archaea. Bacteria and archaea import molybdenum and tungsten from the environment in the form of the oxyanions molybdate (MoO(4) (2-)) and tungstate (WO(4) (2-)). After binding molybdate with high affinity, they interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. In contrast to the structure of the two ModA homologs from Escherichia coli and Azotobacter vinelandii, where the oxygen atoms are tetrahedrally arranged around the metal center, the structure of Pyrococcus furiosus ModA/WtpA (PfModA) has shown that a binding site for molybdate and tungstate is where the central metal atom is in a hexacoordinate configuration. This octahedral geometry was rather unexpected. The ModA proteins belong to the PBP2 superfamily of periplasmic binding proteins that differ in size and ligand specificity, but have similar tertiary structures consisting of two globular subdomains connected by a flexible hinge. They have been shown to bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	4.68821e-75
NZ_CP040751.1\|WP_147820665.1\|1712757_1713492_-\|acyl-ACP-thioesterase	gnl\|CDD\|366738	pfam01643, Acyl-ACP_TE, Acyl-ACP thioesterase. This family consists of various acyl-acyl carrier protein (ACP) thioesterases (TE) these terminate fatty acyl group extension via hydrolysing an acyl group on a fatty acid.	1.19652e-36
NZ_CP040751.1\|WP_147820669.1\|1715659_1716334_-\|molybdate-ABC-transporter-permease-subunit	gnl\|CDD\|226629	COG4149, ModC, ABC-type molybdate transport system, permease component [Inorganic ion transport and metabolism].	4.56973e-67
NZ_CP040751.1\|WP_147820660.1\|1707720_1708299_+\|hypothetical-protein	gnl\|CDD\|199889	cd02859, E_set_AMPKbeta_like_N, N-terminal Early set domain, a glycogen binding domain, associated with the catalytic domain of AMP-activated protein kinase beta subunit. E or "early" set domains are associated with the catalytic domain of AMP-activated protein kinase beta subunit glycogen binding domain at the N-terminal end. AMPK is a metabolic stress sensing protein that senses AMP/ATP and has recently been found to act as a glycogen sensor as well. The protein functions as an alpha-beta-gamma heterotrimer. This N-terminal domain is the glycogen binding domain of the beta subunit. This domain is also a member of the CBM48 (Carbohydrate Binding Module 48) family whose members include pullulanase, maltooligosyl trehalose synthase, starch branching enzyme, glycogen branching enzyme, glycogen debranching enzyme, and isoamylase.	6.983e-14
NZ_CP040751.1\|WP_147822697.1\|1712332_1712761_-\|GNAT-family-N-acetyltransferase	gnl\|CDD\|379228	pfam13508, Acetyltransf_7, Acetyltransferase (GNAT) domain. This domain catalyzes N-acetyltransferase reactions.	2.97591e-13
NZ_CP040751.1\|WP_147820656.1\|1704256_1704979_-\|ComF-family-protein	gnl\|CDD\|223970	COG1040, ComFC, Predicted amidophosphoribosyltransferases [General function prediction only].	4.96284e-53
NZ_CP040751.1\|WP_147820666.1\|1713577_1714354_-\|transporter-substrate-binding-domain-containing-protein	gnl\|CDD\|270228	cd01007, PBP2_BvgS_HisK_like, The type 2 periplasmic ligand-binding protein domain of the sensor-kinase BvgS and histidine kinase receptors, and related proteins. This family comprises the periplasmic sensor domain of the two-component sensor-kinase systems, such as the sensor protein BvgS of Bordetella pertussis and histidine kinase receptors (HisK), and uncharacterized related proteins. Typically, the two-component system consists of a membrane spanning sensor-kinase and a cytoplasmic response regulator. It serves as a stimulus-response coupling mechanism to enable microorganisms to sense and respond to changes in environmental conditions. The N-terminal sensing domain of the sensor kinase detects extracellular signals, such as small molecule ligands and ions, which then modulate the catalytic activity of the cytoplasmic kinase domain through a phosphorylation cascade. The periplasmic sensor domain belongs to the type 2 periplasmic-binding fold protein (PBP2) superfamily, whose members are involved in chemotaxis and uptake of nutrients and other small molecules from the extracellular space as a primary receptor. PBP2 typically comprises of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two receptor cytoplasmically-located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	4.76795e-14
NZ_CP040751.1\|WP_147820659.1\|1706474_1706996_-\|nitroreductase-family-protein	gnl\|CDD\|380313	cd02136, PnbA_NfnB-like, nitroreductase similar to Mycobacterium smegmatis NfnB. Members of this family utilize FMN as a cofactor and catalyze reduction of a variety of nitroaromatic compounds, including nitrofurans, nitrobenzens, nitrophenol, nitrobenzoate and quinones by using either NADH or NADPH as a source of reducing equivalents in an obligatory two-election transfer mechanism. The enzyme is typically a homodimer. Mycobacterium smegmatis nitroreductase NfnB plays a role in resistance to benzothiazinone.	6.62142e-40
NZ_CP040751.1\|WP_147820658.1\|1705841_1706474_-\|MBL-fold-metallo-hydrolase	gnl\|CDD\|293792	cd06262, metallo-hydrolase-like_MBL-fold, mainly hydrolytic enzymes and related proteins which carry out various biological functions; MBL-fold metallohydrolase domain. Members of the MBL-fold metallohydrolase superfamily are mainly hydrolytic enzymes which carry out a variety of biological functions. The class B metal beta-lactamases (MBLs) for which this fold was named perform only a small fraction of the activities included in this superfamily. Activities carried out by superfamily members include class B beta-lactamases which can catalyze the hydrolysis of a wide range of beta-lactam antibiotics, hydroxyacylglutathione hydrolases (also called glyoxalase II) which hydrolyze S-d-lactoylglutathione to d-lactate in the second step of the glycoxlase system, AHL lactonases which catalyze the hydrolysis and opening of the homoserine lactone rings of acyl homoserine lactones (AHLs), persulfide dioxygenase which catalyze the oxidation of glutathione persulfide to glutathione and persulfite in the mitochondria, flavodiiron proteins which catalyze the reduction of oxygen and/or nitric oxide to water or nitrous oxide respectively, cleavage and polyadenylation specificity factors such as the Int9 and Int11 subunits of Integrator, Sdsa1-like and AtsA-like arylsulfatases, 5'-exonucleases human SNM1A and yeast Pso2p, ribonuclease J which has both 5'-3' exoribonucleolytic and endonucleolytic activity and ribonuclease Z which catalyzes the endonucleolytic removal of the 3' extension of the majority of tRNA precursors, cyclic nucleotide phosphodiesterases which decompose cyclic adenosine and guanosine 3', 5'-monophosphate (cAMP and cGMP) respectively, insecticide hydrolases, and proteins required for natural transformation competence. The diversity of biological roles is reflected in variations in the active site metallo-chemistry, for example classical members of the superfamily are di-, or less commonly mono-, zinc-ion-dependent hydrolases, human persulfide dioxygenase ETHE1 is a mono-iron binding member of the superfamily; Arabidopsis thaliana hydroxyacylglutathione hydrolases incorporates iron, manganese, and zinc in its dinuclear metal binding site, and flavodiiron proteins contains a diiron site.	4.43642e-61
NZ_CP040751.1\|WP_147820668.1\|1715003_1715663_-\|ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|213226	cd03259, ABC_Carb_Solutes_like, ATP-binding cassette domain of the carbohydrate and solute transporters-like. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.	9.21492e-79
NZ_CP040751.1\|WP_147820663.1\|1710210_1711173_+\|tetratricopeptide-repeat-protein	gnl\|CDD\|276809	sd00006, TPR, Tetratricopeptide repeat. The Tetratricopeptide repeat (TPR) typically contains 34 amino acids and is found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans. It is present in a variety of proteins including those involved in chaperone, cell-cycle, transcription, and protein transport complexes. The number of TPR motifs varies among proteins. Those containing 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accommodate an alpha-helix of a target protein. It has been proposed that TPR proteins preferentially interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes.	9.25469e-15
NZ_CP040751.1\|WP_147820657.1\|1704978_1705596_-\|flavodoxin-family-protein	gnl\|CDD\|223728	COG0655, WrbA, Multimeric flavodoxin WrbA [General function prediction only].	5.29052e-17
NZ_CP040751.1\|WP_147820653.1\|1703034_1703304_-\|50S-ribosomal-protein-L27	gnl\|CDD\|235464	PRK05435, rpmA, 50S ribosomal protein L27; Validated.	2.35974e-51
NZ_CP040751.1\|WP_147820671.1\|1717416_1719189_+\|AAA-domain-containing-protein	gnl\|CDD\|226350	COG3829, RocR, Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms].	5.85714e-150
NZ_CP040751.1\|WP_147820664.1\|1711287_1712340_+\|HD-domain-containing-protein	gnl\|CDD\|225116	COG2206, COG2206, c-di-GMP phosphodiesterase class II (HD-GYP domain) [Signal transduction mechanisms].	4.59099e-27
NZ_CP040751.1\|WP_147822696.1\|1707173_1707719_+\|sigma-70-family-RNA-polymerase-sigma-factor	gnl\|CDD\|182012	PRK09641, PRK09641, RNA polymerase sigma factor SigW; Provisional.	1.21538e-34
NZ_CP040751.1\|WP_147820667.1\|1714375_1714969_-\|NAAT-family-transporter	gnl\|CDD\|280149	pfam01914, MarC, MarC family integral membrane protein. Integral membrane protein family that includes the protein MarC. MarC was thought to be a multiple antibiotic resistance protein. Nevertheless, a study has shown that MarC is not involved in multiple antibiotic resistance. The function of this family is unclear.	5.7094e-34

>NZ_CP040751.1|WP_147820661.1|1708276_1709041_+|hypothetical-protein
MKVNSRFRISALAAMLLLLLSSAVLAGAKLDSLAARAGKCGVDDAVIAGVMRHAQEGAPAGQAAQSILDILIRSCEAGLPQAPFAGKVSEGLAKRVPLQRIVPILETRFKDYSFVRELLVREGTDSSGLQQDTAILGDALASGMTRQELEILFARLHRENPMDAVLGVQLYSYMFLAGLGKDACERVVAAGLEHDALNPDWLGFSRVVVLAKRKGLEDEAIARAAVQALSEKADVKRAMMLLGFTARPVLNSDE
>NZ_CP040751.1|WP_147820660.1|1707720_1708299_+|hypothetical-protein
MSKERDQYSDECIGRLIQEMPESTPPPWLASRVMANLEAKRPGVWERFRAWMTTPVSLMVSPARVAFASLLLVAALGVAGLMGTGMPGAGPGNADGLMPVSFVLKDPSMGFRSVSVIGSFNGWDARNNQMEYVPETGMWVFRTRLPAGDHEYVFLVDGEKVLQDPQSVLSRDDGFGNRNSVLLIKHESEQSL
>NZ_CP040751.1|WP_147822696.1|1707173_1707719_+|sigma-70-family-RNA-polymerase-sigma-factor
MDEEHEREIVHCVLQGDVQAFEALVLRYQKPLYNLALRATGNEDAAADLTQEAFTRAYAQLERFDRKKRFFPWLYTIAVNVVRDHLRKKGRERVMGVEDPEGMAARAWSGDRDAMQDHMELKRLVREMENLPLDYREALVLRFRQDFSMKEIAQALGIGLSGAKMRVSRGLQMLRKRLKEQ
>NZ_CP040751.1|WP_147820659.1|1706474_1706996_-|nitroreductase-family-protein
MINDTNAVLRAIRERRSIRKYTEEPVSRDHLTAMLEAGQWAPSGLNNQPWRFLVILPGDERREELAQCTKYGHIVRNAGALVCVLLQREAMYSETKDHQGAGACIQNMLLAAHALGLGAVWLGQIINDQAASLGALGLSPDDYELQAVLAVGHPAQRGDSQRKPLTELLLEDF
>NZ_CP040751.1|WP_147820658.1|1705841_1706474_-|MBL-fold-metallo-hydrolase
MQIKTFPLGPLETNCHVLSHDGKAVVVDPGGDPSEVLAHLEKEGLTLTHILNTHLHFDHTYGNRALSEATGVSILAGADDKPLLSTELGRGGMMGLPSVEMFEIEEIGEGEHEFAGLACKVFTTPGHSTGSLSFYFPEAGACFVGDLIFYRSIGRTDFPGGSLEVLKASVAEKIFTLPKETRLFSGHGPDTTVGDEMHHNPFFSEFRGDV
>NZ_CP040751.1|WP_147820657.1|1704978_1705596_-|flavodoxin-family-protein
MKPKAVIYACSHRKGNTDHAAELLLKGIEEAGGAAEIIRLRKHEVLPCLACGHCDSNVDGRLEDRCVLAQKDEAARLYAPLFTAPVVFFTSPIYFYHLPSRFKTWIDRAQQFWKARMDKEPWVASLPRRKAYSVFVAGRPEGEKLFEGARLSLKFFLWNFNVRPEETLQYRGVDESRDLAAHETYGREIQRMGRDAWVDAMKDND
>NZ_CP040751.1|WP_147820656.1|1704256_1704979_-|ComF-family-protein
MRPLIRRLTARLGLLQGRCPVCGVLRGTDHGPLCPACARDLRPRTGGYCPRCGLFFGAETDEAHLCSDCRLHPRPWDRLHFHGRHDGALRELILAYKFSGGLHLSRLLQDMALAAFERHNESRPDLIVPVPLHRRRLLWRGYNQSLELARRIATRHNIPLDARALVRTRNTVPQTRVEAGERRRNIRDAFRADAASVAGKSVLLVDDVLTTGATLEECAKTLHKAGSSAVDILILSVAQE
>NZ_CP040751.1|WP_147820655.1|1703806_1704235_+|hypothetical-protein
MKRVVLPTLLFCLLLLVLPGCKKQYVGDVVSPQCGYGFVAPVTESRASYKNMTIDYTVSLLEEDGKYRFEGAAEMHGKAQSGVRIKSIEFRILLIRDNTIVDNIRLNARGVDPDQPMDLFKEFECKEGFDRLTFDWVIWYYH
>NZ_CP040751.1|WP_147820654.1|1703323_1703635_-|50S-ribosomal-protein-L21
MFAIIETGGKQYRVEEGLEFNVDLLKVEAGDKLALDKVLLVDKDGDTKVGAPYVDGAQVECEVLGHTRGKKVIVFHKLPKKDARKTQGHRHDYTQLKVKSIKA
>NZ_CP040751.1|WP_147820653.1|1703034_1703304_-|50S-ribosomal-protein-L27
MAHKKAGGSSRNGRDSAGQRRGVKRYGGQEVLAGNILVRQLGTKIHPGENVGMGKDYTLFALVDGVVKYEKYTRKRVVKTRVSIVPAEA
>NZ_CP040751.1|WP_147820663.1|1710210_1711173_+|tetratricopeptide-repeat-protein
MTRFSGIVVLLLLMVAGGCAEVMGPYYLQQREYGRGIETYSQTVKENPGDSSAWYYLGRLYLGDDKPKEAQVALVRAVELKPDDADYLFWLGVSKWAQQDFDGEREAYKRALSYDDDHVQAMLYLGHNHLDRGEWAEAKALYDRVLKWDRYNPEALYNRAVALGRLGDREGEVSQLKQFLEYYPDGSLALYATVRLNQHGDFTYRNFIIGSRNLTLMPSAFREGTAEQVFETKPSLAVLGAMMEENDKLSIHIVSYCKGDKELARKRAQAVRGYILSGHPHFDPARLPLSWFDVSETVEVRGKKYFLDESVQFITAVPEK
>NZ_CP040751.1|WP_147820664.1|1711287_1712340_+|HD-domain-containing-protein
MRKAYKGGEESCVGEHMAEPDDIQLAEDYLQISPNILETFPRDRAPVDLYILDEGIGNVRPLYHKGDPLGGQRYARILDHCRDEQLFLYRKDYREYAQHLSKRLGLVLVESDLNDREVAEIFFLALHYRLVDFFDQPMQGRLRDLKRDLSILSEFLWIDPVRTDFLCHNLDKHNDLATHAVNCTFIGLGLYAMHYRKKVGRLNLTHMALGLALHDLGMTMVPESVKEKEGVLLHRDKEALQKHPDLAMGMLKRLKVDDQIVEKCVMEHHERLDGSGYPARLSGERISVPGRVCALADSFCAGVEERSFRSGKNALEVAASLVKQDSKYDVVLARKLYELVECGFEGCRTR
>NZ_CP040751.1|WP_147822697.1|1712332_1712761_-|GNAT-family-N-acetyltransferase
MMPNIELTFDIENIDWEHACTIFERAPLGTRKPDRLQKIFENSQLVCFAWDNGTLVGLARALSDQVAWSVIYDLCMFPEYQGQGLGKRMMRAMIERLDTPNVQLHSVPAMMGFYEKLGFRKMTTAMVLTADPERLERGGYII
>NZ_CP040751.1|WP_147820665.1|1712757_1713492_-|acyl-ACP-thioesterase
MNDLTLTRNYDIRSYETDEHWRATLPALCNHLQDIATRHAADLGFGYEDLIRTRRIWVLSRAYLHMDAMPGFGESVAVQTWPSGTLKTVATRDFVVRQNEHVIGRGVSAWAVIDLDTRKATSVDDLLEQRVIPDLPPALEFEGRAVKRIKEGEREVRIIARKGDHDVNGHVNSIRQVEFLLESAPEQWQRERRCVGGDVQYRAECHAGDELRCLCMPQDDDTALHILMRTSDDREVARMKTWWK
>NZ_CP040751.1|WP_147820666.1|1713577_1714354_-|transporter-substrate-binding-domain-containing-protein
MNRRDFIKSMAATGAAGLLAPLRAIAGPLLSVNYAEGAPPYSYAVDGTVHGLLPDSLDFLLGEKMGFGLRHRTFPWKRSQLLVRQDDGDALCTTPTPERRLYLDFSAEPVVRTKTYLFYSATNPRAEAIQGIRTLEDLGGFQVVNYLGDAWMYSILPAGLWVYRAKTVQEAFHLVGKNRQDVFIGSLPDVKGTLSRLRLAPPVTCHEIENPRTASFHLGIRKQYPEVRDILARFDALVRRERKSGALDAVIAGRPKDA
>NZ_CP040751.1|WP_147820667.1|1714375_1714969_-|NAAT-family-transporter
MTSLFFSLYIKLFFLLTPFFVLTVFLSMTKGMELKQQRSIAVRVACAAIVIGLVLYSVGNEIFATLDITLDAFRIGAGSLLFLSAVKLVGGRSGPEAPEEEGDISVVPLAIPVTIGPATIGTLLILGAELGDTTQKLLGAAALVAAGMSIGVLLLLGPAIRRLVGKMGLSMLQKITGLVLSALAAQIVFTGIRNFLG
>NZ_CP040751.1|WP_147820668.1|1715003_1715663_-|ATP-binding-cassette-domain-containing-protein
MIEATLRKKLEAYSLTMDLTCDPGEILCIVGPSGAGKTTLIRMLAGLERPDSGSVRCNGELWNDTDTNTFVPPQQRHIGFVFQDYTLFPHLTLEKNVLFAASDENRARELMKRMGIWELRHRKPSAISGGERQRGALAQAFARSPRALFLDEPFSSLDSRTRQELHALLREIVHENAVPTVMITHNLHEAYALGDRVVAMQDGRRDDNWLLPFAAEQSM
>NZ_CP040751.1|WP_147820669.1|1715659_1716334_-|molybdate-ABC-transporter-permease-subunit
MDITSLFITGKLALVVTPLLLAASLPVAWLLAFSRIPGKGFVEATCCLPLVLPPTVLGFYLLVFLGPHGALGAAWESLFGGRLVFTFSGLVLASMVYSLPFAILPLKAAFQKLDPRLMEAAAVLGLSSRQAFFRVVLPNSLGGLATAAVLVFAHTMGEFGVALMIGGSIPGQTKVASISIYESVESLEYADAWALSAVLLGLSYVVLFLISRLDRNGQYGGGRR
>NZ_CP040751.1|WP_147820670.1|1716336_1717128_-|molybdate-ABC-transporter-substrate-binding-protein
MKTSHPITAKASDRIKMITLCKHFFAAAILTVCLASPALAETITVACAANFTAPMKQLAALYSEKTGVEVQCTFGSTGMLYGQIKNGAPIDLFFAADEKRPAMLQEAGMAGEPKVYAKGKSVLWSKLDALKNLKDWKDVLKNGQVKSIAIATPKTAPYGAAAEKAMQDVGAYKNVADKLVFAKNVGQSFQFAFSGSADAAFVALSQGLSENGAMGTTWPMPEAGLISQAVCPLKDHAAEADKFLTFVLQAPEARDIVKKFGYE
>NZ_CP040751.1|WP_147820671.1|1717416_1719189_+|AAA-domain-containing-protein
MLKSIQPYVKRYARVIAKVVGIDVEVVDADMIRIAGTGIYEQGVGESIDQEGEVYRHVMKSRDPFIMENPREHGLCGSCQRKDQCRETMSVCTPIVDGADVVGVIGLVCFSDDERKTILQNRETYVDFLVQIAALIAHKLRDQRQVAEAQDFLDLMMQVMDVYNRGVVVFNAGGCISYINRLARLELGLEPDEEPGCIRVERTGDFFSDLEEFTVNVHGSRRSLVGRLEELPSANQNFASVLVFDSLPRMTQRMSQFSAGEHSGLNAILGKSRSLIRLKEQIRRVAASTSTVLITGESGTGKELVARAIHATSDRADKPFIAINCGALPDNLLESELFGYTKGAFTGANPKGKIGKFELADGGVIFLDEIGTLPLYLQVKLLRVLQERQFCRLGSNRLIHVDIRVIAATNDNLSDLIDQGHFREDLFYRLNVIPLETPPLRNRPEDMEVLGDYFLHKYCERFGKRPAPMDDAVLDAFKVYNWPGNVREFENAIEYMVNMMPDGGPLHPGLLPRKLLGSLGHGAPASAPVAANGEESLPLLPLKVLERRAIVAALQHFGSDTKGKKLAAESLQIGIATLYRKIKEYDIAGA

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Crispr_ID: NZ_CP040751_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP040751_3

3686508-3686599

Orphan

Consensus_repeat	Method
CAAAACTGAGCGCCCACTCAGTTTT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP040751_3

>merge|NZ_CP040751|3|3686508-3686599|CRISPRCasFinder
CAAAACTGAGCGCCCACTCAGTTTTTCGAAGAATAGGGTGTGAGCCCGCACAAGTCAAAGAAAACGCCAAAACTGAGCGCCTACTCAGTTTT

>NZ_CP040751|3|3|3686508-3686599|CRISPRCasFinder
CAAAACTGAGCGCCCACTCAGTTTT	TCGAAGAATAGGGTGTGAGCCCGCACAAGTCAAAGAAAACGC
CAAAACTGAGCGCCTACTCAGTTTT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP040751.1\|WP_147822460.1\|3686934_3687876_-\|zinc-ABC-transporter-solute-binding-protein	unknown	unknown	gnl\|CDD\|376518
NZ_CP040751.1\|WP_147822456.1\|3682526_3683744_-\|response-regulator	unknown	unknown	gnl\|CDD\|333815
NZ_CP040751.1\|WP_147822468.1\|3693100_3695611_-\|ferrous-iron-transport-protein-B	unknown	unknown	gnl\|CDD\|223447
NZ_CP040751.1\|WP_147822462.1\|3688781_3689504_-\|ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|224046
NZ_CP040751.1\|WP_147822451.1\|3678648_3679170_+\|amphi-Trp-domain-containing-protein	unknown	unknown	gnl\|CDD\|275149
NZ_CP040751.1\|WP_147822459.1\|3686782_3687016_-\|FeoB-associated-Cys-rich-membrane-protein	unknown	unknown	gnl\|CDD\|378908
NZ_CP040751.1\|WP_147822457.1\|3683767_3685891_-\|STAS-domain-containing-protein	unknown	unknown	gnl\|CDD\|223732
NZ_CP040751.1\|WP_147822466.1\|3691851_3692679_-\|DUF4198-domain-containing-protein	unknown	unknown	gnl\|CDD\|378467
NZ_CP040751.1\|WP_147822461.1\|3687872_3688778_-\|iron-chelate-uptake-ABC-transporter-family-permease-subunit	unknown	unknown	gnl\|CDD\|224033
NZ_CP040751.1\|WP_147822464.1\|3690414_3691089_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040751.1\|WP_147822458.1\|3685904_3686489_-\|TetR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224228
NZ_CP040751.1\|WP_147822467.1\|3692782_3693100_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040751.1\|WP_147822463.1\|3689500_3690418_-\|zinc-ABC-transporter-solute-binding-protein	unknown	unknown	gnl\|CDD\|238499
NZ_CP040751.1\|WP_147822465.1\|3691085_3691742_-\|HD-domain-containing-protein	unknown	unknown	gnl\|CDD\|225116
NZ_CP040751.1\|WP_147822812.1\|3675940_3677173_+\|HAMP-domain-containing-protein	unknown	unknown	gnl\|CDD\|185008
NZ_CP040751.1\|WP_147822452.1\|3679285_3679714_-\|response-regulator	unknown	unknown	gnl\|CDD\|225114
NZ_CP040751.1\|WP_147822450.1\|3677252_3678356_-\|BMP-family-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|380577
NZ_CP040751.1\|WP_147822453.1\|3679769_3680405_-\|HAMP-domain-containing-histidine-kinase	unknown	unknown	gnl\|CDD\|223715
NZ_CP040751.1\|WP_147822454.1\|3680409_3680769_-\|response-regulator	unknown	unknown	gnl\|CDD\|333815
NZ_CP040751.1\|WP_147822455.1\|3680765_3682505_-\|two-component-sensor-histidine-kinase	unknown	unknown	gnl\|CDD\|236901

Protein	Function_ID	Function_description	E-value
NZ_CP040751.1\|WP_147822460.1\|3686934_3687876_-\|zinc-ABC-transporter-solute-binding-protein	gnl\|CDD\|376518	pfam01297, ZnuA, Zinc-uptake complex component A periplasmic. ZnuA includes periplasmic solute binding proteins such as TroA that interacts with an ATP-binding cassette transport system in Treponema pallidum. ZnuA is part of the bacterial zinc-uptake complex ZnuABC, whose components are the following families, ZinT, pfam09223, pfam00950, pfam00005, all of which are regulated by the transcription-regulator family FUR, pfam01475. ZinT acts as a Zn2+-buffering protein that delivers Zn2+ to ZnuA (TroA), a high-affinity zinc-uptake protein. In Gram-negative bacteria the ZnuABC transporter system ensures an adequate import of zinc in Zn2+-poor environments, such as those encountered by pathogens within the infected host.	1.14635e-09
NZ_CP040751.1\|WP_147822456.1\|3682526_3683744_-\|response-regulator	gnl\|CDD\|333815	pfam00072, Response_reg, Response regulator receiver domain. This domain receives the signal from the sensor partner in bacterial two-component systems. It is usually found N-terminal to a DNA binding effector domain.	5.00577e-27
NZ_CP040751.1\|WP_147822468.1\|3693100_3695611_-\|ferrous-iron-transport-protein-B	gnl\|CDD\|223447	COG0370, FeoB, Fe2+ transport system protein B [Inorganic ion transport and metabolism].	4.875e-165
NZ_CP040751.1\|WP_147822462.1\|3688781_3689504_-\|ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|224046	COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism].	7.43177e-82
NZ_CP040751.1\|WP_147822451.1\|3678648_3679170_+\|amphi-Trp-domain-containing-protein	gnl\|CDD\|275149	TIGR04354, conserved_hypothetical_protein, amphi-Trp domain. This domain usually comprises most of the span of bacterial or archaeal proteins with a length of about 90 amino acids. Some members, however, are extended by one or two copies of domain pfam07411 in the C-terminal region. No residue in this domain is invariant. A striking feature of this domain is a C-terminal region that alternates strongly charged with strongly hydrophobic residues and usually ends with a Trp residue, e.g. LEIEIEW or FEIKVRW, suggesting an amphipathic beta strand structure. We suggest the name amphi-Trp for this domain. Some members of this function occur regularly in genomic contexts that include putative kinases of unknown specificity related to (but distinct from) HPr kinase, a Ser-specific protein kinase. The function is unknown.	1.02836e-10
NZ_CP040751.1\|WP_147822459.1\|3686782_3687016_-\|FeoB-associated-Cys-rich-membrane-protein	gnl\|CDD\|378908	pfam12669, P12, Virus attachment protein p12 family. This family of proteins are related to Virus attachment protein p12 from the African swine fever virus. The family appears to contain an N-terminal signal peptide followed by a short cysteine rich region. The cysteine rich region is extremely variable and it is possible that only the N-terminal region is homologous.	0.000198139
NZ_CP040751.1\|WP_147822457.1\|3683767_3685891_-\|STAS-domain-containing-protein	gnl\|CDD\|223732	COG0659, SUL1, Sulfate permease and related transporters (MFS superfamily) [Inorganic ion transport and metabolism].	1.11562e-69
NZ_CP040751.1\|WP_147822466.1\|3691851_3692679_-\|DUF4198-domain-containing-protein	gnl\|CDD\|378467	pfam10670, DUF4198, Domain of unknown function (DUF4198). This family was previously missannotated in Pfam as NikM.	5.92841e-52
NZ_CP040751.1\|WP_147822461.1\|3687872_3688778_-\|iron-chelate-uptake-ABC-transporter-family-permease-subunit	gnl\|CDD\|224033	COG1108, ZnuB, ABC-type Mn2+/Zn2+ transport systems, permease components [Inorganic ion transport and metabolism].	2.09645e-56
NZ_CP040751.1\|WP_147822458.1\|3685904_3686489_-\|TetR-family-transcriptional-regulator	gnl\|CDD\|224228	COG1309, AcrR, Transcriptional regulator [Transcription].	1.58289e-12
NZ_CP040751.1\|WP_147822463.1\|3689500_3690418_-\|zinc-ABC-transporter-solute-binding-protein	gnl\|CDD\|238499	cd01017, AdcA, Metal binding protein AdcA. These proteins have been shown to function in the ABC uptake of Zn2+ and Mn2+ and in competence for genetic transformation and adhesion. The AdcA proteins belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. They are comprised of two globular subdomains connected by a long alpha helix and they bind their ligand in the cleft between these domains. In addition, many of these proteins have a low complexity region containing metal binding histidine-rich motif (repetitive HDH sequence).	3.72361e-85
NZ_CP040751.1\|WP_147822465.1\|3691085_3691742_-\|HD-domain-containing-protein	gnl\|CDD\|225116	COG2206, COG2206, c-di-GMP phosphodiesterase class II (HD-GYP domain) [Signal transduction mechanisms].	1.99398e-64
NZ_CP040751.1\|WP_147822812.1\|3675940_3677173_+\|HAMP-domain-containing-protein	gnl\|CDD\|185008	PRK15048, PRK15048, methyl-accepting chemotaxis protein II; Provisional.	5.37646e-55
NZ_CP040751.1\|WP_147822452.1\|3679285_3679714_-\|response-regulator	gnl\|CDD\|225114	COG2204, AtoC, Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms].	5.83188e-35
NZ_CP040751.1\|WP_147822450.1\|3677252_3678356_-\|BMP-family-ABC-transporter-substrate-binding-protein	gnl\|CDD\|380577	cd06354, PBP1_PrnA-like, periplasmic binding domain of basic membrane lipoprotein, PnrA, in Treponema pallidum and its homologs from other bacteria and Archaea. Periplasmic binding domain of basic membrane lipoprotein, PnrA, in Treponema pallidum and its homologs from other bacteria and Archaea. The PnrA lipoprotein, also known as Tp0319 or TmpC, represents a novel family of bacterial purine nucleoside receptor encoded within an ATP-binding cassette (ABC) transport system (pnrABCDE). It shows a striking structural similarity to another basic membrane lipoprotein Med which regulates the competence transcription factor gene, comK, in Bacillus subtilis. The members of PnrA-like subgroup are likely to have similar nucleoside-binding functions and a similar type 1 periplasmic sugar-binding protein-like fold.	1.16872e-80
NZ_CP040751.1\|WP_147822453.1\|3679769_3680405_-\|HAMP-domain-containing-histidine-kinase	gnl\|CDD\|223715	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms].	1.7141e-08
NZ_CP040751.1\|WP_147822454.1\|3680409_3680769_-\|response-regulator	gnl\|CDD\|333815	pfam00072, Response_reg, Response regulator receiver domain. This domain receives the signal from the sensor partner in bacterial two-component systems. It is usually found N-terminal to a DNA binding effector domain.	1.01299e-23
NZ_CP040751.1\|WP_147822455.1\|3680765_3682505_-\|two-component-sensor-histidine-kinase	gnl\|CDD\|236901	PRK11360, PRK11360, two-component system sensor histidine kinase AtoS.	7.11404e-52

>NZ_CP040751.1|WP_147822458.1|3685904_3686489_-|TetR-family-transcriptional-regulator
MKKKDAILKVATVLFANKGFADTSVHELAELTGAAEGTIFYHYKSKERLLLAILDKTRESIVGQFDEYLSGRGFESGMEMVEELISFYLYMAGLMEDQFLLLHRHFLYKFSETNPEFRSNLEEIYNCITRYFERAIATGQEDGSITTDVEARKSALVLFTMVDGLVRFKNYNLYDAGALLKELMRSCRRMLQAH
>NZ_CP040751.1|WP_147822457.1|3683767_3685891_-|STAS-domain-containing-protein
MLTRIFPFIGWFKGYNMASFRADAISGLTVALVLIPQSMAYAQLAGMPAYYGLYASFLPPLIAALFGSSRQLATGPVAVVSLMTAASLEPLATAGGEGYIAYAILLAFMVGLFQFLLGVLRLGLVVNFLSHPVVNGFTNAAAIIIASSQLSKLFGVYVDKAEHHYETIINVVKGAFHYTHWPTLAMGAGAIAIMVVLKRINPRIPNVLVAVAVTTVVSWGTGFNHDASVALDAIQVPAVHEKVVKFNAAIDGIDALAEARTQLGVKLDQTKTAGDVIGTLDMEHDLNVVNIEISRLKHEAHLLREDLRSGLYDGVERDGSLLLFPQGEVPAGMQADGRTWRIKVGNKKLDPGKLRAIGGGAVVGTVPSGLPSLTVPTFDIKVMLHLLPFAAIISLLGFMEAISIAKAMAAKTGQRLDPNQELIGQGLANMLGACGKSYPASGSFSRSAVNLQAGAVSGMSSVFTSLMVVIALLFFTPLLYHLPQAVLAAVIMMAVIGLVNASGFIHAWKAQWYDGAISVLSFVATLAFAPHLDKGIMIGVALSLLVFLYKSMRPRVASLSRTEDETLGDAVVFGLRECKHIAVVRFDGPLFFANASFLEDQITDRLMNNRQLRHIIVVSNGINDMDASGEEALSLIVDRVRSTGVDISFSGVNEAVMDVLQRTHLLEKIGEDHIYPTMETALCATHESAHLDGEEETCPLTTVCRLT
>NZ_CP040751.1|WP_147822456.1|3682526_3683744_-|response-regulator
MSVITVFNGLFSEAGIVVKRVVDATGSRLVTDQEIVADAAGLSGMAEEKIARAFSARTSVFNAFSHEKERAVAWLRLAMARKLLDTDNLVFSGFASQLPPANIGHILKVCLISDMHNRLAIAEREEGYAEKHAQKIIHHDDKDRAAWVKALKGVDDPWNPALYDMVVPVAKTGVDESAALIVEQAANQAVTITPATRKAVEDFLLSATVGSVLAGEGHNVTASAKGGDVTLTINKHVLMLERLEHELKEIVGRVEGVKSVTTKVGKGFHQTDIYRKMDFDIPSKVLLVDDEREFVQTLSERLLLRDMGSAVVYDGESALNLVEEDEPEVMILDLKMPGIDGIEVLRRVKASRPNIEVIILTGHGSEADRAVCMDLGAFAYLHKPVDIDVLSETLKAANDKIKAGK
>NZ_CP040751.1|WP_147822455.1|3680765_3682505_-|two-component-sensor-histidine-kinase
MSFLKRFKPDFWETDPEAGPYKSLFNYQRTWRKTIVLLAVVALVPLIVMTLIDYNVTRKSLESENELRIARVTSNTRRSVTYFLDERKSALEFIAQRESLRSLRSPKRLSAILAGLKESFGGFVDIGLIDSNGKQVAYVGPYELQGRDYSDQYWYLRTLERGAFISGVFRGFRGVPHLIVAVRCPDLGNGKCFVLRATLDTAQFNALLADIDLAGSGDVFIINQQGMLQTPSRWHGEVLEQVALPAPEYSEKTRVYKAHEADGRGILAGYAYITDTPFILMTVKVTDEIMRPWQSIRMELLWMLVVSILVILIVIVGVATRMVSKIYIADQSRAKTLHRMEHTNRMASIGRLAAGVAHEINNPLAIINEKAGLIKDMFTYLDKYQADERLMGNIDSIINSVDRCGTITKRLLSFARHIDVSYQRIVFKDLADEVLGFLHKEAEYRSITIDKVIPSDLPEFESDRGKLQQIFLNLVNNAFQAMNNGGHLRITANRGAEDTLIFTVADDGCGIPESDRKRIFEPFFSTKKTRGGTGLGLSITYGLVQELGGSMSVESEVGRGTSFTITLPLSRKPQEAEQQ
>NZ_CP040751.1|WP_147822454.1|3680409_3680769_-|response-regulator
MKILLVDDEKELVTAMAERLELRGLEAHWALGGEQALMRVAKCDYDVAVLDMKMPGLSGLELRRILSERCPSMKFIFLSGHGSEDDFKAGSAEAESYLIKPVSIEDLMNKIREATSGGE
>NZ_CP040751.1|WP_147822453.1|3679769_3680405_-|HAMP-domain-containing-histidine-kinase
MPLDNREDLQFFGRICASVSHDIKNVLAVVNEGAGLLSDLSIMAEKGMPLEPEKLRSVAGSIQNQIRRGDGIIKDLNTFAHSVDEPVGTVNLAEVITLVAALAKRLAAAKCVTLEAGECADALVRTEVYGLEYLLHGMVTHSLARAGDGGTLTFSCRPEDGGAVVSLCGPGLDSNDELPGTMTALAAELGMAFRAEPANRILELAVPEKTS
>NZ_CP040751.1|WP_147822452.1|3679285_3679714_-|response-regulator
MAEKVLLIDDEVEFLKNLSERMTLRGMNVTTASSGAEAVKSLEAEGYDAIVLDLQMPGMDGIEVLRRIREVSSTMQVILLTGHATLEKGVEAIKLGAMDFMEKPADIDVLTEKIKKAQAKKMVLVESETEAKMKDIMASKGW
>NZ_CP040751.1|WP_147822451.1|3678648_3679170_+|amphi-Trp-domain-containing-protein
MHKNKIDMKLSLSREEAISYLEDLLKSLKAGTVVVQEGEDFVSMVPGEQVLVNLGAQMDTDRNSFNFTMSWSQTEHRDLAVQEKAAVPAKTERTPLARRFAAPPARSRGAKGLARKRSITKPCTTDPVEHKPPVKPGDCMPEPVFEEKAAPKTTSVKPHCDLMTKPTTTGTKP
>NZ_CP040751.1|WP_147822450.1|3677252_3678356_-|BMP-family-ABC-transporter-substrate-binding-protein
MAEAGARKQEDFVRRVALAVLACCLLISLAACSEQPREEAGTIAGHRTGRLLQPSKMLFGMFLDYSGLGDRGYMDMQYKGLVSGCQKHGAGFVLEQRQESSPEASERLLETLVANDCKAVFCTSYSMKQPMMVVAERHPEVLFILMDNTLDTYLPNTASATFRVGQAAYLAGFLAANMSETRSLGVIAGTDAPPIREFVQGFSAGVEMAGKDVSLQTRYIDHVDPGFNPWNNPAVAVRIAREMAEQEQVDVFFPVAGASGLGVFQYVKDIGKYAIGVDSDQDHLAQGHILTSVMKRLDVAVETLVGEIAHGRFENRNYLYELGNGGVSLSPMKYTRGRIPRQVLERMAELEAAIVSGAITVPSAMAR
>NZ_CP040751.1|WP_147822812.1|3675940_3677173_+|HAMP-domain-containing-protein
MAMARNAEGTVAQVDRLNQGDLILQSKEVLKDGKDKLGLVTVAISLSKVNRQLQSIIWGILIQLVSMNVVIILLLSVIINRTLVRPVQDLKEFAARFGDGDLSASISVNSKDEVGDLADAFRSMRDKLTGIVKNVQEVSENVAGGSEELYSTSESLAQGATEQAASVEQISSSIEQMSSNLAQSAENAQKTRSLAQKAAKDAEEGGRAVEQTVGAMKEIAEKIAIVEEIARQTNLLALNAAIEAARAGENGKGFAVVAAEVRKLAERSGQAAAEISELSISSVDVADKAGKMLKQTVPDIKETAELIEEISVSANEQTEGVSQISAAISQLDRVVQQNAAGSEEVSTSSSELADQAQAMQKTMSFFKTGNGGSPRFTTKRTKVKTAKALPQQGTAAQALPEQDEDDFERF
>NZ_CP040751.1|WP_147822459.1|3686782_3687016_-|FeoB-associated-Cys-rich-membrane-protein
MDRGGSDGPFRREPEQAAGRLVRPGRIGGYMDNVLVFIIVAAAVVYVGLRLWRNLSGKKPTSCGCAGCSCKNKDCEE
>NZ_CP040751.1|WP_147822460.1|3686934_3687876_-|zinc-ABC-transporter-solute-binding-protein
MRNYLILFLLVCLFPACSSRQVPLEQARLHSSLRSAMLASQDATMALGCILARGTGVEVLRAVPEGYAMRGHAAYFKKHWEEFRALAARADAVLTITASWPEDPLYPWARRADIRIVQVDATRPLDGSRAGVPLMEAPGTGAVSPYVWNSPGTFARMADIVAADMARLYPGEARKIEANLRELKQSLFRLRSAFETRFGMLERFEAVALTGQFVSLTDEFGLEVVEYLTAPEYRWTKRDHARLRSALRESGAKAVICAWEPRPEIAATVRECGAAVVVLQPFALDGPWTVGAVTAHFDANLNRLLAALSGPAE
>NZ_CP040751.1|WP_147822461.1|3687872_3688778_-|iron-chelate-uptake-ABC-transporter-family-permease-subunit
MEAIYNAIRLPLMGMGKAGILPEFFQYAFVVNALLCSLLIGPVLGGVGTMVVTKRLAFFSQAVGQAALTGVALGILLGEPVTAPYASLFGFCILFGLLMNYTRNRTRMSQDTVIGVFLSISLALGACVLLYVTGRVNMHVLDNILFGSVLTVNDTDMNVLLAICALCLLVGTPLFNRMLLASFNPSLAHVRGVNARLYDYIFILMITVITVASLKIVGAVLVEALFIIPAAAARNVSRSMRGFFCYSVLIATASCVLGVILPMQFEIPVPSGGAIILVATGFFALTALVRSLSGSFREASI
>NZ_CP040751.1|WP_147822462.1|3688781_3689504_-|ATP-binding-cassette-domain-containing-protein
MTVSEFLAVGPSVHFENVSLRLGGNSVLDRVSFSVQPGTIHCLVGPNGGGKTSLIRSLLGQMPHEGSIRIGWGTNQVTGYVPQTLDFGRSLPMTVHDFMAMICQDRPAFAGLRRDKRSLVRRALEQVNMQGKEERPFGALSGGERQRVLLAQALIPHPALLVLDEPAAGLDQEGAVVMHGLLQRLREQGTTIVMVHHDLAEVKGMADSVTCLNRQLLFSGPPETELTPEKILDIFTAKAA
>NZ_CP040751.1|WP_147822463.1|3689500_3690418_-|zinc-ABC-transporter-solute-binding-protein
MIRKFVFALVLACLLAGGARAQDRLRIGVTLHPYYSYTANIVGDAAEVVPLIGEGFNPHNYRPQPADIKRCMDLDVLVVNGVGHDEFAFEILEASGMKGKLPVIQANRDVSLIPVAGTLDGRKTVNPHTFVSVTASIRQIFTISSRLQEIDPEHAGLYRKNTRDYVRRLRRMKAEYMRRVADLPELDFRCATIHGGYDYLLQEFGLQVTAVIEPGHGLKPSASQLAETIKEIRRLGVDVIFTEMDFPDKYVETIHAETGVRIRHLSHLTGGTYAPDDFEKGIRANLEALTSALLEAHSLKQGDPS
>NZ_CP040751.1|WP_147822464.1|3690414_3691089_-|hypothetical-protein
MIQGRRLEDIHPIREELVRPAGGGNETLWLAVAAVVVVVACALGMGLRDRGARTAELLPWQMNAFTALNPEELGTFNALYTAAVEIDAVHEDGDGGWMDISEMEDLFMPPFARDAAWRRQGRMVWTRRVPESPDLDLALYLGVPQQRERSGSFLLVMRHDHSAGRGHGAAEPGHGRFEVWYQASHRGGFPAVIKDQALIAAGWKEVVAFKGGDEIERVKGEVVS
>NZ_CP040751.1|WP_147822465.1|3691085_3691742_-|HD-domain-containing-protein
MKLEEMCGFQVVDAVRLTIHVFAESLGNAIDAKDHCTRSHSEEVAVVSQAIGQQVGLSASQADILHIAGHLHDIGKIGISDAILKKSGPLTDAEYKVIKTHPQMGAEIIGPLTTLMGNDGIAKMVLHHHERYDGTGYPHGLRGTRIPLGARIIAVADSLSAMLQTRPYRPAMDFGKAADEVARCAGTQFDPRIVEAFLDIQDTIKGYIDSMRDLKVAV
>NZ_CP040751.1|WP_147822466.1|3691851_3692679_-|DUF4198-domain-containing-protein
MKKAILAAFALLAVLAMSIPASAHFMMVYTPEIAMEKGGDMDFRMVFTHPAEAGHTMDMGGVKEFYAMYQRGDAKAKKIDLMKYVKEIEWKNPESKNKAFSALLPKKEVRSMGDYTFVFVPGYYFEEEEGVYMQQVTKLIANVGGIPGNWAEPVGLPCEIVPLIKPYGMWTGNVFKAQVLSQGKPVAGAEVEVEYMSHMPDMKSNSMPAASSVDYPQDSFVTQTIFTDANGYITFGVPKAGWWGFAALGVGPDKEYKGKELSQDAVIWVKAVDMK
>NZ_CP040751.1|WP_147822467.1|3692782_3693100_-|hypothetical-protein
MKKLMTLTLTLALLCLAATAFAHSPLCDCFDNGDGTVSCEGGFSDGSSASGVKMYVKDGAGKVLQEGQMNADSEFSFSKPQGAYMVLFDAGEGHKVEINGADIVE
>NZ_CP040751.1|WP_147822468.1|3693100_3695611_-|ferrous-iron-transport-protein-B
MGRTNLLVAMAGQPNCGKSTVFNMLTGARQHVANYPGVTVEKKTGQFRMGDTRVELVDLPGTYSLTSYSMEERVARDFILHDKPGVIVDVVDASNLKRNLYLTLQLLEMEVPTIVDLNMMDVAERRGIRVDYKGMAEHLGVPVVPTTGKKGVGGDAIKRAVSETADGSGSRTFVVDYGALEPFIERLGESVAEDHRMASAYPARWLALKLLENDSEARELVKKYHADASAVFTAVDGLRDEFQREADLPAERHIAFARHRACAEIAKQFVKAPSEKRKTLSDLADRYVCNRFFGPLILIAILLVLYEVSIVFGGWVAVKVWPVWGGIESFTAGILPPPDFLGEPLLRSLGVWVVKSTTAILNYLPIFFLLFALIAVLEDSGYMPRMAFILDRLFRRFGLHGQSTLPLILGGVYVGGCAIPGVMATKAIPDERARLATILVVPMMNCLAKVPLYLILIGAYFADQAGLALFFIATVTLFMALPVAKALSLTVLSKRESAPFIMEMPPYHLPTVDGVLRRAIERIWLFVKKIVTVVVAVAVVIFVLINFPGVGKERMAFYEAKRDAAVSKFMKVVDKTSYKGTLAASDVTALILFEEDLKDAKRGVTDKEESAKINQRFETANPVFYSVVKRKGADGKKLNKALKNVVKTRKKLRREIRAERFESSFLGVLGHALEPVTQYAGFNWRINIALLSAFAAKENSAATLGSIYGLDGSDQSVQESMKSGEAGFTALHALALMLFMALYPPCIPTSIMVRMQSNSTKWMLFSIVYQTTLGLGIATLVFTGGTLLGLTGFQAMWAFYGLCVAATIVMAMIPYREAKKETCQSTNTNCLEGGTN

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Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP040751_1	1.13\|1474876\|33\|NZ_CP040751\|PILER-CR,CRISPRCasFinder,CRT	1474876-1474908	33	NZ_CP027025	Streptomyces sp. WAC00288 plasmid p3, complete sequence	18283-18315	6	0.818
NZ_CP040751_1	1.19\|1475271\|34\|NZ_CP040751\|PILER-CR,CRISPRCasFinder,CRT	1475271-1475304	34	LC585292	Siphovirus Jomon_CT89 DNA, nearly complete genome	2743-2776	7	0.794
NZ_CP040751_1	1.16\|1475074\|33\|NZ_CP040751\|PILER-CR,CRISPRCasFinder,CRT	1475074-1475106	33	NZ_CP016080	Mesorhizobium loti NZP2037 plasmid pML2037, complete sequence	241097-241129	9	0.727
NZ_CP040751_1	1.19\|1475271\|34\|NZ_CP040751\|PILER-CR,CRISPRCasFinder,CRT	1475271-1475304	34	NZ_LN831789	Streptomyces leeuwenhoekii strain type strain (C34 = DSM 42122 = NRRL B-24963) plasmid pSLE2	70441-70474	9	0.735
NZ_CP040751_1	1.19\|1475271\|34\|NZ_CP040751\|PILER-CR,CRISPRCasFinder,CRT	1475271-1475304	34	NZ_CP007515	Rubrobacter radiotolerans strain RSPS-4 plasmid 1, complete sequence	93543-93576	9	0.735
NZ_CP040751_1	1.19\|1475271\|34\|NZ_CP040751\|PILER-CR,CRISPRCasFinder,CRT	1475271-1475304	34	NZ_CP007517	Rubrobacter radiotolerans strain RSPS-4 plasmid 3, complete sequence	39174-39207	9	0.735
NZ_CP040751_1	1.17\|1475139\|34\|NZ_CP040751\|PILER-CR,CRISPRCasFinder,CRT	1475139-1475172	34	NZ_CP017783	Rhodobacter sp. LPB0142 plasmid pEJ02, complete sequence	538-571	11	0.676
NZ_CP040751_1	1.17\|1475139\|34\|NZ_CP040751\|PILER-CR,CRISPRCasFinder,CRT	1475139-1475172	34	NZ_CP017784	Rhodobacter sp. LPB0142 plasmid pEJ03, complete sequence	4482-4515	11	0.676
NZ_CP040751_1	1.19\|1475271\|34\|NZ_CP040751\|PILER-CR,CRISPRCasFinder,CRT	1475271-1475304	34	NC_013855	Azospirillum sp. B510 plasmid pAB510a, complete sequence	445105-445138	11	0.676

1. spacer 1.13|1474876|33|NZ_CP040751|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP027025 (Streptomyces sp. WAC00288 plasmid p3, complete sequence) position: , mismatch: 6, identity: 0.818

-cgtatcgatcctccagcatcgtccggtactgct	CRISPR spacer
tcggaccgg-cctccagcgccgtccggtactgct	Protospacer
 ** *.**. ********..**************

2. spacer 1.19|1475271|34|NZ_CP040751|PILER-CR,CRISPRCasFinder,CRT matches to LC585292 (Siphovirus Jomon_CT89 DNA, nearly complete genome) position: , mismatch: 7, identity: 0.794

ttgcgcttcttggtggagccgccgccggttgtac	CRISPR spacer
ttgcgcttcttggtggagccagcgcctcctgaag	Protospacer
********************. ****  .** *

3. spacer 1.16|1475074|33|NZ_CP040751|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP016080 (Mesorhizobium loti NZP2037 plasmid pML2037, complete sequence) position: , mismatch: 9, identity: 0.727

ctctccgcgacacgccgccaggcggacgtcttc	CRISPR spacer
gaagcggcgacacgccgtcaggcggccgtcgac	Protospacer
    * ***********.******* ****  *

4. spacer 1.19|1475271|34|NZ_CP040751|PILER-CR,CRISPRCasFinder,CRT matches to NZ_LN831789 (Streptomyces leeuwenhoekii strain type strain (C34 = DSM 42122 = NRRL B-24963) plasmid pSLE2) position: , mismatch: 9, identity: 0.735

ttgcgcttcttggtggagccgccgccggttgtac	CRISPR spacer
ttgcggttcgtggtggagccgccgccaccggagg	Protospacer
***** *** ****************. . * .

5. spacer 1.19|1475271|34|NZ_CP040751|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP007515 (Rubrobacter radiotolerans strain RSPS-4 plasmid 1, complete sequence) position: , mismatch: 9, identity: 0.735

ttgcgcttcttggtggagccgccg---ccggttgtac	CRISPR spacer
ctgcgcttcttcgtggagctgccgcacccgttca---	Protospacer
.********** *******.****   *** *..

6. spacer 1.19|1475271|34|NZ_CP040751|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP007517 (Rubrobacter radiotolerans strain RSPS-4 plasmid 3, complete sequence) position: , mismatch: 9, identity: 0.735

ttgcgcttcttggtggagccgccg---ccggttgtac	CRISPR spacer
ctgcgcttcttcgtggagctgccgcacccgttca---	Protospacer
.********** *******.****   *** *..

7. spacer 1.17|1475139|34|NZ_CP040751|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP017783 (Rhodobacter sp. LPB0142 plasmid pEJ02, complete sequence) position: , mismatch: 11, identity: 0.676

catacagggagatgaagggcaagacggtatcaac	CRISPR spacer
ttgccgaggagatgaagggcaagaccgcatcggt	Protospacer
.   *..****************** *.***...

8. spacer 1.17|1475139|34|NZ_CP040751|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP017784 (Rhodobacter sp. LPB0142 plasmid pEJ03, complete sequence) position: , mismatch: 11, identity: 0.676

catacagggagatgaagggcaagacggtatcaac	CRISPR spacer
ttgccgaggagatgaagggcaagaccgcatcggt	Protospacer
.   *..****************** *.***...

9. spacer 1.19|1475271|34|NZ_CP040751|PILER-CR,CRISPRCasFinder,CRT matches to NC_013855 (Azospirillum sp. B510 plasmid pAB510a, complete sequence) position: , mismatch: 11, identity: 0.676

ttgcgcttcttggtggagccgccgccggttgtac	CRISPR spacer
acgcgctccttggtggcgccgccgccgacgtcga	Protospacer
 .*****.******** **********..  ..

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

592901 : 602912

Methanothermobacter_phage(14.29%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_147819538.1\|592901_594128_+	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC	Q9HH70	Methanothermobacter_phage	2.4e-38	32.4
WP_147819539.1\|594415_594799_+	hypothetical protein	NA	NA	NA	NA
WP_147819540.1\|594844_596158_+	nodulation protein NfeD	NA	NA	NA	NA
WP_147819541.1\|596177_596945_+	slipin family protein	A0A2K9KZA2	Tupanvirus	7.5e-30	32.6
WP_147819542.1\|596941_597949_+	SDR family NAD(P)-dependent oxidoreductase	A0A218MKE7	uncultured_virus	1.9e-12	28.1
WP_147819543.1\|598175_598952_+	AAA family ATPase	Q8JL10	Natrialba_phage	3.6e-24	34.6
WP_147819544.1\|598991_599411_-	hypothetical protein	NA	NA	NA	NA
WP_147819545.1\|599508_600426_+	ParB/RepB/Spo0J family partition protein	I3NLC2	Bifidobacterium_phage	4.5e-21	38.2
WP_147819546.1\|600549_601551_+	D-glycero-beta-D-manno-heptose-7-phosphate kinase	M4QF80	Synechococcus_phage	1.5e-09	31.0
WP_147819547.1\|601589_602912_+	ATP-dependent 6-phosphofructokinase	M4QN38	Ostreococcus_lucimarinus_virus	9.0e-15	28.9

DBSCAN-SWA_2

825448 : 834521

uncultured_marine_virus(16.67%)

tail

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_147819734.1\|825448_827536_+	hypothetical protein	A0A0F7L7G6	uncultured_marine_virus	4.9e-100	32.6
WP_147819735.1\|827550_828072_+	hypothetical protein	NA	NA	NA	NA
WP_147819736.1\|828074_828974_+	hypothetical protein	A0A1B1IW61	uncultured_Mediterranean_phage	4.2e-24	37.5
WP_147819737.1\|829002_831360_+	hypothetical protein	M1T360	Cyanophage	6.0e-86	31.8
WP_147819738.1\|831366_831885_+	hypothetical protein	NA	NA	NA	NA
WP_147819739.1\|832072_832891_+	hypothetical protein	A0A193GYM0	Enterobacter_phage	2.4e-26	45.8
WP_147819740.1\|832961_833645_+\|tail	tail fiber protein	A0A291LA10	Bordetella_phage	1.2e-34	49.4
WP_147819741.1\|833714_834521_+	hypothetical protein	B2ZY49	Ralstonia_phage	4.3e-28	35.8

DBSCAN-SWA_3

2616895 : 2625746

Klosneuvirus(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_147821395.1\|2616895_2617414_-	adenine phosphoribosyltransferase	A0A1V0SKE5	Klosneuvirus	1.3e-25	44.3
WP_147821396.1\|2617541_2618318_+	ribosomal RNA small subunit methyltransferase A	NA	NA	NA	NA
WP_147821397.1\|2618587_2618860_+	HU family DNA-binding protein	B5TA87	Burkholderia_phage	2.8e-16	50.6
WP_147821398.1\|2619247_2619448_+	30S ribosomal protein S21	NA	NA	NA	NA
WP_147821399.1\|2619452_2619899_+	GatB/YqeY domain-containing protein	A0A292GL36	Xanthomonas_phage	4.8e-21	44.5
WP_147821400.1\|2619928_2622238_+	endonuclease MutS2	Q94M10	Lactobacillus_phage	2.6e-09	41.9
WP_147821401.1\|2622250_2623996_+	DNA primase	B8Q5B5	Abalone_shriveling_syndrome-associated_virus	1.8e-39	31.2
WP_147821402.1\|2623982_2625746_+	RNA polymerase sigma factor RpoD	A0A2I7SAT0	Vibrio_phage	5.5e-36	34.3

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP040751

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection