CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_AP019841	Leptotrichia wadei strain JMUB3936	6 crisprs	cas14j,cas14k,cas3,WYL,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,cas6,csm6,cas2,csx1,csx20,DEDDh,DinG,csa3	1	6	3
NZ_AP019842	Leptotrichia wadei strain JMUB3936 plasmid pJMUB3934p1, complete sequence	1 crisprs	NA	1	0	0
NZ_AP019843	Leptotrichia wadei strain JMUB3936 plasmid pJMUB3934p2, complete sequence	1 crisprs	NA	1	0	1
NZ_AP019844	Leptotrichia wadei strain JMUB3936 plasmid pJMUB3936p3, complete sequence	0 crisprs	NA	0	0	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_AP019841_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_AP019841_1

891462-891641

TypeIII

Consensus_repeat	Method
ATAAAAGAGAATTGAACTCCGAAAGGAGAC	CRISPRCasFinder

2 spacers

cas2,csm6,cas6,csm5gr7,csm4gr5,csm3gr7,csm2gr11,cas10

The CRISPR arrays of NZ_AP019841_1

>merge|NZ_AP019841|1|891462-891641|CRISPRCasFinder
ATAAAAGAGAATTGAACTCCGAAAGGAGACGGAAACACTCATAACGAGTGTAATTATCATTATTGAATAGATATAAAAGAGAATTGAACTCCGAAAGGAGACGGAAACATTTTCTAGTCATTTCAATATTAGTATGCCCAATTACTGCTGATAAAAGAGAATTGAACTCCGAAAGGAGAC

>NZ_AP019841|1|1|891462-891641|CRISPRCasFinder
ATAAAAGAGAATTGAACTCCGAAAGGAGAC	GGAAACACTCATAACGAGTGTAATTATCATTATTGAATAGAT
ATAAAAGAGAATTGAACTCCGAAAGGAGAC	GGAAACATTTTCTAGTCATTTCAATATTAGTATGCCCAATTACTGCTG
ATAAAAGAGAATTGAACTCCGAAAGGAGAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_AP019841.1\|WP_147003388.1\|886747_888010_+\|type-III-A-CRISPR-associated-RAMP-protein-Csm5	csm5gr7	cd09662_csm5gr7_CAS-III-A	gnl\|CDD\|224251
NZ_AP019841.1\|WP_147004558.1\|888011_888734_+\|CRISPR-system-precrRNA-processing-endoribonuclease-RAMP-protein-Cas6	cas6	pfam10040_cas6_CAS-III:CAS-IV	gnl\|CDD\|227838
NZ_AP019841.1\|WP_147003391.1\|894300_894492_+\|type-II-toxin-antitoxin-system-HicA-family-toxin	unknown	unknown	gnl\|CDD\|377942
NZ_AP019841.1\|WP_147003384.1\|881902_884554_+\|type-III-A-CRISPR-associated-protein-Cas10/Csm1	cas10	cd09680_cas10_CAS-III	gnl\|CDD\|187811
NZ_AP019841.1\|WP_147003385.1\|884625_884970_+\|type-III-A-CRISPR-associated-protein-Csm2	csm2gr11	cd09647_csm2gr11_CAS-III-A	gnl\|CDD\|367635
NZ_AP019841.1\|WP_147004560.1\|902073_902376_+\|PTS-sugar-transporter-subunit-IIB	unknown	unknown	gnl\|CDD\|99906
NZ_AP019841.1\|WP_147003396.1\|899938_901291_-\|DUF21-domain-containing-protein	unknown	unknown	gnl\|CDD\|224173
NZ_AP019841.1\|WP_147003386.1\|885003_885741_+\|type-III-A-CRISPR-associated-RAMP-protein-Csm3	csm3gr7	cd09684_csm3gr7_CAS-III-A:CAS-III-D	gnl\|CDD\|187815
NZ_AP019841.1\|WP_147003397.1\|901442_901781_-\|PTS-lactose/cellobiose-transporter-subunit-IIA	unknown	unknown	gnl\|CDD\|376749
NZ_AP019841.1\|WP_147003390.1\|891935_894044_-\|NAD-dependent-DNA-ligase-LigA	unknown	unknown	gnl\|CDD\|236137
NZ_AP019841.1\|WP_147004559.1\|888819_890160_+\|CRISPR-associated-protein	csm6	pfam09659_csm6_CAS-III-A	gnl\|CDD\|312974
NZ_AP019841.1\|WP_147003387.1\|885750_886764_+\|type-III-A-CRISPR-associated-RAMP-protein-Csm4	csm4gr5	COG1567_csm4gr5_CAS-III-A	gnl\|CDD\|224483
NZ_AP019841.1\|WP_147003389.1\|891001_891325_+\|CRISPR-associated-endonuclease-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|187856
NZ_AP019841.1\|WP_147003382.1\|879339_880860_+\|glutamate--tRNA-ligase	unknown	unknown	gnl\|CDD\|234953
NZ_AP019841.1\|WP_147003383.1\|881261_881732_+\|hypothetical-protein	unknown	unknown	unknown
NZ_AP019841.1\|WP_147003393.1\|895090_896203_+\|23S-rRNA-(adenine(2503)-C(2))-methyltransferase-RlmN	unknown	unknown	gnl\|CDD\|223890
NZ_AP019841.1\|WP_147003395.1\|898456_899839_-\|NCS2-family-permease	unknown	unknown	gnl\|CDD\|225161
NZ_AP019841.1\|WP_147003398.1\|902824_904177_+\|chorismate-binding-protein	unknown	unknown	gnl\|CDD\|223225
NZ_AP019841.1\|WP_147003394.1\|896302_898348_+\|PBP1A-family-penicillin-binding-protein	unknown	unknown	gnl\|CDD\|273955
NZ_AP019841.1\|WP_147003392.1\|894521_894914_+\|type-II-toxin-antitoxin-system-HicB-family-antitoxin	unknown	unknown	gnl\|CDD\|224514

Protein	Function_ID	Function_description	E-value
NZ_AP019841.1\|WP_147003388.1\|886747_888010_+\|type-III-A-CRISPR-associated-RAMP-protein-Csm5	gnl\|CDD\|224251	COG1332, COG1332, CRISPR system related protein, RAMP superfamily [Defense mechanisms].	3.3564e-07
NZ_AP019841.1\|WP_147004558.1\|888011_888734_+\|CRISPR-system-precrRNA-processing-endoribonuclease-RAMP-protein-Cas6	gnl\|CDD\|227838	COG5551, COG5551, CRISPR system related protein, RAMP superfamily [Defense mechanisms].	2.16479e-06
NZ_AP019841.1\|WP_147003391.1\|894300_894492_+\|type-II-toxin-antitoxin-system-HicA-family-toxin	gnl\|CDD\|377942	pfam07927, HicA_toxin, HicA toxin of bacterial toxin-antitoxin,. HicA_toxin is a bacterial family of toxins that act as mRNA interferases. The antitoxin that neutralizes this is family HicB, pfam15919.	2.24085e-08
NZ_AP019841.1\|WP_147003384.1\|881902_884554_+\|type-III-A-CRISPR-associated-protein-Cas10/Csm1	gnl\|CDD\|187811	cd09680, Cas10_III, CRISPR/Cas system-associated protein Cas10. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Multidomain protein with permuted HD nuclease domain, palm domain and Zn-ribbon; signature gene for type III; also known as Csm1 family.	0
NZ_AP019841.1\|WP_147003385.1\|884625_884970_+\|type-III-A-CRISPR-associated-protein-Csm2	gnl\|CDD\|367635	pfam03750, Csm2_III-A, Csm2 Type III-A. Clusters of short DNA repeats with non-homologous spacers, which are found at regular intervals in the genomes of phylogenetically distinct prokaryotic species, comprise a family with recognisable features. This family is known as CRISPR (short for Clustered Regularly Interspaced Short Palindromic Repeats). A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-associated) proteins. This entry represents Csm2 Type III-A, a family of Cas proteins also known as TM1810/Csm2.	5.28761e-09
NZ_AP019841.1\|WP_147003396.1\|899938_901291_-\|DUF21-domain-containing-protein	gnl\|CDD\|224173	COG1253, TlyC, Hemolysins and related proteins containing CBS domains [General function prediction only].	4.5423e-118
NZ_AP019841.1\|WP_147003386.1\|885003_885741_+\|type-III-A-CRISPR-associated-RAMP-protein-Csm3	gnl\|CDD\|187815	cd09684, Csm3_III-A, CRISPR/Cas system-associated RAMP superfamily protein Csm3. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; RAMP superfamily protein.	4.44413e-81
NZ_AP019841.1\|WP_147003397.1\|901442_901781_-\|PTS-lactose/cellobiose-transporter-subunit-IIA	gnl\|CDD\|376749	pfam02255, PTS_IIA, PTS system, Lactose/Cellobiose specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. The lactose/cellobiose-specific family are one of four structurally and functionally distinct group IIA PTS system enzymes. This family of proteins normally function as a homotrimer, stabilized by a centrally located metal ion. Separation into subunits is thought to occur after phosphorylation.	7.85226e-36
NZ_AP019841.1\|WP_147003390.1\|891935_894044_-\|NAD-dependent-DNA-ligase-LigA	gnl\|CDD\|236137	PRK07956, ligA, NAD-dependent DNA ligase LigA; Validated.	0
NZ_AP019841.1\|WP_147004559.1\|888819_890160_+\|CRISPR-associated-protein	gnl\|CDD\|312974	pfam09659, Cas_Csm6, CRISPR-associated protein (Cas_Csm6). Clusters of short DNA repeats with nonhomologous spacers, which are found at regular intervals in the genomes of phylogenetically distinct prokaryotic species, comprise a family with recognisable features. This family is known as CRISPR (short for Clustered, Regularly Interspaced Short Palindromic Repeats). A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins.	6.06503e-30
NZ_AP019841.1\|WP_147003387.1\|885750_886764_+\|type-III-A-CRISPR-associated-RAMP-protein-Csm4	gnl\|CDD\|224483	COG1567, COG1567, CRISPR system related protein, RAMP superfamily [Defense mechanisms].	2.03143e-34
NZ_AP019841.1\|WP_147003389.1\|891001_891325_+\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|187856	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas2 is present in majority of CRISPR/Cas systems along with Cas1; RNAse specific to U-rich regions; Possesses an RRM/ferredoxin fold.	4.62368e-16
NZ_AP019841.1\|WP_147003382.1\|879339_880860_+\|glutamate--tRNA-ligase	gnl\|CDD\|234953	PRK01406, gltX, glutamyl-tRNA synthetase; Reviewed.	0
NZ_AP019841.1\|WP_147004560.1\|902073_902376_+\|PTS-sugar-transporter-subunit-IIB	gnl\|CDD\|99906	cd05564, PTS_IIB_chitobiose_lichenan, PTS_IIB_chitobiose_lichenan: subunit IIB of enzyme II (EII) of the N,N-diacetylchitobiose-specific and lichenan-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In these systems, EII is either a lichenan- or an N,N-diacetylchitobiose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. In the chitobiose system, these subunits are expressed as separate proteins from chbA, chbB, and chbC of the chb operon (formerly the cel (cellulose) operon). In the lichenan system, these subunits are expressed from licA, licB, and licC of the lic operon. The lic operon of Bacillus subtilis is required for the transport and degradation of oligomeric beta-glucosides, which are produced by extracellular enzymes on substrates such as lichenan or barley glucan. The lic operon is transcribed from a gammaA-dependent promoter and is inducible by lichenan, lichenan hydrolysate, and cellobiose. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include chitobiose/lichenan, ascorbate, lactose, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.	9.95362e-44
NZ_AP019841.1\|WP_147003393.1\|895090_896203_+\|23S-rRNA-(adenine(2503)-C(2))-methyltransferase-RlmN	gnl\|CDD\|223890	COG0820, COG0820, Predicted Fe-S-cluster redox enzyme [General function prediction only].	3.18664e-139
NZ_AP019841.1\|WP_147003395.1\|898456_899839_-\|NCS2-family-permease	gnl\|CDD\|225161	COG2252, COG2252, Xanthine/uracil/vitamin C permease [Nucleotide transport and metabolism].	2.75962e-143
NZ_AP019841.1\|WP_147003398.1\|902824_904177_+\|chorismate-binding-protein	gnl\|CDD\|223225	COG0147, TrpE, Anthranilate/para-aminobenzoate synthases component I [Amino acid transport and metabolism / Coenzyme metabolism].	4.34646e-130
NZ_AP019841.1\|WP_147003394.1\|896302_898348_+\|PBP1A-family-penicillin-binding-protein	gnl\|CDD\|273955	TIGR02074, Includes:_Penicillin-insensitive_transglycosylase, penicillin-binding protein, 1A family. Bacterial that synthesize a cell wall of peptidoglycan (murein) generally have several transglycosylases and transpeptidases for the task. This family consists of bifunctional transglycosylase/transpeptidase penicillin-binding proteins (PBP). In the Proteobacteria, this family includes PBP 1A but not the paralogous PBP 1B (TIGR02071). This family also includes related proteins, often designated PBP 1A, from other bacterial lineages. [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan].	0
NZ_AP019841.1\|WP_147003392.1\|894521_894914_+\|type-II-toxin-antitoxin-system-HicB-family-antitoxin	gnl\|CDD\|224514	COG1598, COG1598, Predicted nuclease of the RNAse H fold, HicB family [General function prediction only].	4.21042e-10

>NZ_AP019841.1|WP_147003389.1|891001_891325_+|CRISPR-associated-endonuclease-Cas2
MDEWDFLDEDFCHEFFEDTFTVVVIYDIIDNKRRAFLKNLLNSYGNRIQRSAFECLLTREKCKTLLKEIEKFAEEGDLIRIYRLNQNVKKVIYGELNEIENEDYYFF
>NZ_AP019841.1|WP_147004559.1|888819_890160_+|CRISPR-associated-protein
MLHICRYFRPEKIYLVLTSEMQKRNENRIYEKAIKESLEDYNPIFEYINTDIDNAHLFDIYFNKINETFNKIKLEHPNAEVLVNITSGTAQMISNLVMYIVDAVNINIVPIQVATPEGRGNTSKVVNNSYEVNDEKENNFDNIEEFRTNRILFPDLRQYSRLLVKNQIKELLKKYEYSTCLELLKRDIFQENSKLNGLLNFANDRRHLKGLKSNGKLKSLNDKKLDKFYYYNKNETVENKVKEWYKIVDYFSLANIKQKSGDIAGYTIMLEPLIVNIYLSILRDIFGKRLSDLFLEKRKEGEFSYKTDILKIKNYVGLKEKIEHELGILELKNSTFVSDSVLIATIKYFIEKSESETLEKMDLEYFSNFSKTLHKIKEVRNMIAHSLKTINRDDFNSEAKVGIDTINSKITDFFNKCYTNLGYKENMIYVYDEINEAINEILGTEK
>NZ_AP019841.1|WP_147004558.1|888011_888734_+|CRISPR-system-precrRNA-processing-endoribonuclease-RAMP-protein-Cas6
MLAKIEMEIEGNGLDVNMSSLFHGYLMNSIDSAYADYLHYNETHPYTSCIYKDMESGKIFWRITTFNKNAYEMLIKYFLENDVKNIYLEKKGIEIVVKSISMTKTSFDELFFSNEKKSKIYFLTPTTHKSNGVLQIFPNISTLLLGVINKINQHSDTIKLEDENVINELLEKVYIDEYYLRTRYFFLENIRVRGFIGNLKIKIKGKDEMLYQLLNFLLKVSEYTGLGVKTALGMGGIKIG
>NZ_AP019841.1|WP_147003388.1|886747_888010_+|type-III-A-CRISPR-associated-RAMP-protein-Csm5
MGKIVKYKMEMEVLTPVHIAGANYKSKLNKTEYIFNPNTNDLTIIDNNKFVNFLVEKKIIDKYLDEIRKNNRLNLYSFLTNKSGLYDNNNYDNKNKNEALKKDLKNFTKKSYKNLDIELKIKENEKKENLNNITLLNKNVKDEVYIPGSSIKGALVNLLLVSYIINNRDEFVNEIKQIENEVENFDKKRNEFVSKENITEKEIEIFDKKNSKFFQGKVKNVINKIQEKILYENCSNKKIKKFGISVSDSYENKKDIDVNFYQDIDEKIKDKKESYLPVVREYIEPKNIFEFDITLDFELLLRTRLKINDFDDLINALEESTDYLIENTLKLPDELCCQNLILGANTGFHQKTIVHALFKDKSERTQVVKILLHKGGTNAIRLHLNDKDSPRVINRIRKNGKLELAGLVEIRKISEKEVGK
>NZ_AP019841.1|WP_147003387.1|885750_886764_+|type-III-A-CRISPR-associated-RAMP-protein-Csm4
MTYLLYKLKFPNGIHVGANSSLELTSTTVSSDVFYSAFYAEYIRIFGENDRELFQLTENDEFKISDLLPFKEMKTETVFYVPKPFVNDIERKQSNDENEQVVDRKKVKKLSYIPANRLKEYFEFLETGKNFPEIDDDFGEKELHTKNKVSRIGEDTELYNVEVFRFNKDSGLYFIVQLPEKWQEKFENVLESLSLAGIGGKKSAGYGQFSITDDAMIFDGEYFDIIESEDDRFINESLYKESEKYLLLSSYLPQKDEIEKIKNKENGYQLIKRSGFVNSPKYSENPQKRKQVYMISSGAVLNFKPAGRLADLKLHGNHSIYRMGKPIAIGVTYGKDS
>NZ_AP019841.1|WP_147003386.1|885003_885741_+|type-III-A-CRISPR-associated-RAMP-protein-Csm3
MNTLKGKFIITGKIKVLTGLHIGTSGDFSAIGAVDNIVIRDTVTNKPIIPGSSLKGKMRYLLSRTKYNDNSTLTMPNIKEEHNEIRRLFGSSGNKEKNEMIVLSRLQFCDMLLREKDYGRDVEFDLPYTEIKYENTIDRGTCVANPRQQERVPAGSEFDFRLIYNIENTENMKKEVKCDFENILLMFGLLEDDYLGGHGTRGYGRVKFEDLKLIEKVYIKENEDDIEYLRSEIENIENYTEIFGK
>NZ_AP019841.1|WP_147003385.1|884625_884970_+|type-III-A-CRISPR-associated-protein-Csm2
MENKTVEKLVEENKNNMVTTTQLRQLLSNSVIVKNKISSNVLKKEDKLSDKLLNDVKYLLIKHTYQCGREFKVKEFDKKFEISEKLKKIKTKEDFDIFYRYLEEIVAYVKYYIG
>NZ_AP019841.1|WP_147003384.1|881902_884554_+|type-III-A-CRISPR-associated-protein-Cas10/Csm1
MDEKLINLQIGALLHDIGKIVRRAGKGGKNRHSKAGSDYLENRELLDKEKYREVYDMIKYHHNEEINEKLKQNDKLDDSSLAYLVYEADNIASGVDRVKYEDEINEKGEKVKITEIEGLPLNSIFNKLNLQKNKIEKNFGFLRNDRRNFNIPKEIKEKNKIENTEYLNVLEQLRDDLEEMKKKNILTPEKLNSVLEESCIYFPSSSYVDYVPYYDHVKLTAAVAVCMYIYDMEKENNRDYKNKYFKKSQKKEREKTKFLFVSGEFTGIQNFIYTITSKMAMKSLRGRSFYLELFIEHIIDEILEALNLSRVNLIYSAGSQFYMLLPNVPKTIEILENYKKIVNDFLLKELGTPVYYEISHTETSAEELGNKLSENIKKENQIKEIFKRNSIETSRKKLNRYSEKQLEEIFDEDSDLNKIYNDTKECVICKKSEKEEILIKNSQNESNGNIEICDSCKNYIKLGRDISKSFHQKRTFFMEKNCEEKSSKLKFPKYPKGSVEIVFRNFETVEEVEKESDKFYRFYSINDDYFGKGNSRNIKIGNYNIKPTNEEKENSLVEFTELVKKGKGIERLAVLRADIDNLGTLFQTGFEDTGFVNIDGEKEPYKFVRFSKTVVLSRYLSDFFKRVINLILERKNLTDEKNELFKEYCNIITERTKEKTDGRNIVLVYSGGDDVFAIGTWNDIIEFSVDLRTAFKEFSSDRVTLSAGIGFFDENYPIFQMAQKTGELEKLAKSYNENEIGKTAKDAIALFGVEKNDKLNHVYKWDDFIGKVLNEKYSYLKSRISLKENEETEKVFVGKSKWYSLMNLIRSQFEEKENEKHRIDIARFAYIIARIKYDKQNERQQKNYLDLKKQLFEWIKNEEDAKQLLTAINILIYEYRESK
>NZ_AP019841.1|WP_147003383.1|881261_881732_+|hypothetical-protein
MMLFSVTVFAGTVNAKVANKINFGISPKELKNIIKSEPLSNSHDNGNYAVYYFVNVEDPLGVKRELNSFAFSDNQLFSAVFDSATTDEEHAKIIEDYKKNASKVLKEKLNVKERKGELLLYNSKKLIEIYRIMDHTFITSSLYDSEKLAEILSDYE
>NZ_AP019841.1|WP_147003382.1|879339_880860_+|glutamate--tRNA-ligase
MSNSDNKRVRVRIAPSPTGDPHVGTAYIGLFNYVFAKHNGGDFLLRIEDTDRTRFSEDSEQQIFDAMKWLGLNYDEGPDVGGDRGPYRQSERFEIYKEYAEKLVEKGEAYYCFCTPERLQKLRERQTAMKQAPGYDGHCRNLSKEEVEAKLAAGEPYTIRLKMPYEGETIVNDGLRGEIRFENSKIDDQVLLKSDGFPTYHLANIVDDHLMGITHVIRAEEWISSTPKHIQLYKAFGWDEPKWYHMPLLRNADKTKISKRKNPVSLNYYQEEGYLKEGLLNFLALMGWSFGENKEIFTIEEMIENFSFDKISLGGPVFDLVKLGWVNNHHMRLKDLDELTKLAIPYFVKAGYYADENLSDEEFSKLRRIVEISREGAHTLKELPEISSIYFEDEFELPIVEEGMNKKARKSVERLRNSLETEVGKKSIELFVEKINALNEEISEEEAKEILHGLQDELGEGPAAVLMPLRAVVTGKARGADLYTVIAIIGKERTLKRVQNTLKKIK
>NZ_AP019841.1|WP_147003390.1|891935_894044_-|NAD-dependent-DNA-ligase-LigA
MNLFNQEENNENQNIENKKNNNFSEIQEKYTKLRNEIEYHNNLYYNEDNPIISDMEYDFLIRELKELEQKYPELLEYNKNGENSPTEKIGGTASEKFSKVRHRVPMLSLSNTYNISEIEDFNKRVKKIILAENIENNSKELEYILELKLDGLSISLIYENGMLVQAVTRGDGQVGEDVTENIREIPTIPKKLKENISLEVRGEIILPISSFNRINQEREDEGEDVFANPRNAASGTIRQLDKTIVAERGLDCYLYYLVNAENYGIKTHLESIEYIEKLGFKTTKIFEKYTDFKKLEKAIDKWHDERKKLDYETDGLVIKVNNFSLYEILGYTTKSPRWAIAYKFPAEQVKTKLMDVTFQVGRTGVITPVAELEAVNLSGSVVKRASLHNFDEIRRKDIKIGDNVIVEKAAEIIPQVVNVVFNDRTGEEIEIQEPANCPVCNSELAHEEGLVALKCHNPLCPEKVKRQIAYFVSRDAMNISGLGDKIVEKFIELGKIKTIVDIYSLKEYREELENLEKMGQKSVDNLINNIETSKNRDFSKVLYALGIPFVGKFNANLLTKNFKNIENLKNQSIENLLAVKGIGDKVAIAVNTFLNNENNWKIITDLQNIGLQFAINESDLKEIADNPIKGKNFLVTGKLQKYKRNDIKDIILSKGGNYLSAVSKNLDFLIAGEKAGSKLEKAEKLGVRVLTEEEFEREFLEI
>NZ_AP019841.1|WP_147003391.1|894300_894492_+|type-II-toxin-antitoxin-system-HicA-family-toxin
MSRTKPYRSVVKVLKKNGWELDHTTGSHEIYIKNGKICPLKCTKKDIPSGTLTNIERITGLKF
>NZ_AP019841.1|WP_147003392.1|894521_894914_+|type-II-toxin-antitoxin-system-HicB-family-antitoxin
MKSRLLYPCIVKKEDGIFYANFLDFEGCFTDGETLEEVVINAKDVLSGTLFTMAKHNIPFPSSENKKIDLKDGEFLIYIDVWISPILEKAKNQSIKKTLTIPKWLNDEAEKHSLNFSNILQTALKETLGL
>NZ_AP019841.1|WP_147003393.1|895090_896203_+|23S-rRNA-(adenine(2503)-C(2))-methyltransferase-RlmN
MERSNSEMIDENVKNIDTIEKIDILGMDLESLQEKFIGIGLKKFNASQVFDWLHNKLVFDFDEFSNISKKDREILKEKFYVAKLEFKTHQVSEDGDTEKFLFELKDKRLIESVLISHKNRHTLCVSSQIGCLIGCDFCATATMTYERNLSISEILLQYYYVQKHLMKRGEKLGNVVYMGMGEPFLNYDAVLGSINMLNSPKGQNFSKRNFTISTSGIVNGIKRFTESENQINLAISLHSVRDDVRSEIMPINKRWGVKQLKEALLDYQKKTKNRITFEYILIDNLNCEPEDARELAGFLNSFSCLVNLIPYNPVGGKPYKTPSKQKQREFYKLLKDKNVNVTLRETKGQDIAAACGQLKAKKQMDSSQNV
>NZ_AP019841.1|WP_147003394.1|896302_898348_+|PBP1A-family-penicillin-binding-protein
MKKNNKKVKVEKPRKKFSLLSFFFKVFLFLFVIGIGAGAYLVYTVSKETPVDLIDGYAPVSPSVIYDINGNQIDTIMVQNRAPIGIGEIPPHVQNAFLAIEDRKFRTHHGFDFIRTAKAAFLTLTGRRIEGGSTITQQLAKNAFLSPEQTITRKIKEAILAVEIERKYTKDEILENYLNTIYFGQGAYGIKNAAIKYFNKQPKQLTIAQAAILASLPKSPTKYSKIENALGRERLVLSQMKNYGFITDEEYNEAINEKIKFVNGNIKSRNEEEQISTSNVAPEFTTVVLSEVRKILKIPEEDQKFLFDGYKIYATVDLDLQRAAYTAFNNNYNLKSRADLNGALFSIDPSNGFVKAMVGGKNYKKGNFNRAMSSLRQPGSSFKPVVYLAALQKKMAMNSVMEDSPVKIGNWSPKNYDGVYRDSMTLAKALEISNNVIPVKLLQYVGIDAAEKVWRNAGIVGGDFPKNYTLALGSISTRPVDMAMFYAALANGGYQVQPQYIYKIENKYGEVIYEAKPKMKKVYDSKDVAILTYMLENAVNYGTGQPAKVFKDGKLIPMAGKTGTTSDYVSAWFTGYTPTLATVVYVGNDDNKSMGPGMTGGAAAAPIWKNYMQAVVDLPNYNVGVFEFIDDYIMRKDLTTRDIDLQIGLLDRDGVNKRTALFKAGTEPIEYEGKFRRGVTF
>NZ_AP019841.1|WP_147003395.1|898456_899839_-|NCS2-family-permease
MSTSNIHETSGLKRLFPLLTNENVNMKKEIMAGITTFLTMAYIIAVNPNILSKTGMNAGALVTATCFSAALGCFLMGLIANLPFALASGMGLNAFFAFTVVLKGGISWQTALTAVFCEGIIFIVLTLFKIREAVVNSIPENMKHAVTGGIGVFIAFVGFSGSGLVVLNESTKVSMGHFSPAVIISFIGLILISILDKKNVRGSILYGIVLSSLLAWGYALLNPAHAKELGIYLPSGIFKYESMMPVMGKLDFSLFTDFKMFGNLFVIICTFLFVDFFDTVGTLVGVCSKADMLDENGNVPNVGRALMADAIATTAGAALGVSTVTTYVESSTGVIAGGRTGWTAITTGVLFLISMFFSPIFISIPGCATAPALIYVGYLMLSSVKNIDLHDVLEGVPSFITITTMALTYSIGDGLTLGILSYVLINLFYNLFSKKEDRRPVSWVMIILGALFIVKLLFMS
>NZ_AP019841.1|WP_147003396.1|899938_901291_-|DUF21-domain-containing-protein
MSEGSLLLQIVIIIILTGINAFFSSAEMAIVSLNKNKLKILIEDGNKKAILLDNLLKEPSKFLSTIQVGITLASFFASASAATGLSQFLSEALKPLKIPYSSQISMILITFILSYVTLVFGELIPKRIALRNSENIALSSVGVIVFISTIFSPFVKFLTFSTNLVLTILRMREDNIEEKVSKEELRSLVEVGKEHGVINETEQEMIENIIEFDEKIAREIMIPRTKVFLIDKNISIHELFENKEIEKYSRIPVYENEADNIIGILMAKDLMIEAYKKGFDNIKISDLVQEAYFVPETKNVNELFNEMQLEKKHITILIDEYGGFSGIVTLEDLIEEVMGNIDDEFDDEDLSIHQISKNKYLVNGDVSLYNLNDNFHFELESKYYDTLSGILIENLGYIPEDNENIEPITINGVIFKPQRVRNKKIEKVVMTFDKEKLEEEKMKNKENEED
>NZ_AP019841.1|WP_147003397.1|901442_901781_-|PTS-lactose/cellobiose-transporter-subunit-IIA
MAEEVLDTEMIAMTLIGHAGETKSLAYHAMNAAKEGKFDEAQELMRQSTEEMLKAHELQTDLIVREAGGEKLNVGLIMVHSQDHLMTAILFKELAKEFIEVYKRLEQKADKK
>NZ_AP019841.1|WP_147004560.1|902073_902376_+|PTS-sugar-transporter-subunit-IIB
MKKILLCCAAGMSTSLLINKMKSEAEKRGIEVKIWAEPLDRAKEEFAKADVVLLGPQVKYALTEAKKIAEENNINIDVINMVDYGMMNGAKVLDQALKLL
>NZ_AP019841.1|WP_147003398.1|902824_904177_+|chorismate-binding-protein
MLINKPTYYYSIIRQKFNNSYFAEDERQVIIGIDCEYFDSNEYSYNSLKKIYNSFVKQKKVAPFAGLFGTFAYESIHFFENIEKIEKEQFKFPQFIFANAKAYLHYSKTSKEYSFYGDEKTYFDFLNDEIEKRAENSELLYDIKTDFDEERSHFYGILEKAKEYIKAGDIFQVVLSEQLKLATNMDSLDFYEKLSKANPSPYMYHFPTKYGDIVGSSPEILVDISSDNIYIAPIAGTRPRGKDANEDVFLANDLLNDEKECAEHRMLVDLARNDIGKFAESGSVVVKNLMHIKNYEHVMHIVTDVYGKKRKDVSIFEVIAQALPAGTLSGSPKIRAMQIISELEVFKRNVYAGGIGFLRFNGDVQLAIIIRTAFFENKNYDLNEVDKVRNVFIQAGAGIVFDSVKEKEYDEICHKRASVLNIFKKFCKEEKEIEKVKNKEKKNEKGKDVK

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Crispr_ID: NZ_AP019841_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_AP019841_2

1079464-1080324

Orphan

I-B

Consensus_repeat	Method
GTTAAAGTAAGTTATCCATTAAAACAAGGATTGAAAC	PILER-CR
GTTAAAGTAAGTTATCCATTAAAACAAGGATTGAAAC	CRISPRCasFinder
GTTAAAGTAAGTTATCCATTAAAACAAGGATTGAAAC	CRT

11 spacers

The CRISPR arrays of NZ_AP019841_2

>merge|NZ_AP019841|2|1079464-1080324|PILER-CR,CRISPRCasFinder,CRT
GTTAAAGTAAGTTATCCATTAAAACAAGGATTGAAACAAAATAGAAGCCTCAACATCTGTGATGGGTTCATGTTGTTAAAGTAAGTTATCCATTAAAACAAGGATTGAAACACAATAAAGGAAGATTTAATGCTAAAAAACTTTATTATTGTTAAAGTAAGTTATCCATTAAAACAAGGATTGAAACAGACGGCGAACTTGCTACCTTAGAAAACTTAATTAAAGAGGTTAAAGTAAGTTATCCATTAAAACAAGGATTGAAACCTGCTAGCTCTTTTCCGAACCACATTATAAAGAGGCTGGTTAAAGTAAGTTATCCATTAAAACAAGGATTGAAACCTGTAAGTCCAGTCCTTTATTTCTGGATGTTTATCTATAATGTTAAAGTAAGTTATCCATTAAAACAAGGATTGAAACTTTTCTTAATGTTCCCAGTTACATCAAATTTCATTTTGTTAAAGTAAGTTATCCATTAAAACAAGGATTGAAACTCTATGATAACATCTTTGATTAATCCTTTCTGTGGGTTGTTAAAGTAAGTTATCCATTAAAACAAGGATTGAAACAATGGTGTATCTAATCTGGATTTCTCCATATATATCACGTTAAAGTAAGTTATCCATTAAAACAAGGATTGAAACAATCTATCGATCCAACTTTCGCTCATCCCTTCATTTGTTAAAGTAAGTTATCCATTAAAACAAGGATTGAAACAATCTATCGATCCAACTTTCGCTCATCCCTTCATTTGTTAAAGTAAGTTATCCATTAAAACAAGGATTGAAACAGTATTTGCTTTATTTAATATTCCATTTATAGAAGAAGTTAAAGTAAGTTATCCATTAAAACAAGGTTTAAAAA

>NZ_AP019841|2|1|1079464-1080177|PILER-CR
GTTAAAGTAAGTTATCCATTAAAACAAGGATTGAAAC	AAAATAGAAGCCTCAACATCTGTGATGGGTTCATGTT
GTTAAAGTAAGTTATCCATTAAAACAAGGATTGAAAC	ACAATAAAGGAAGATTTAATGCTAAAAAACTTTATTATT
GTTAAAGTAAGTTATCCATTAAAACAAGGATTGAAAC	AGACGGCGAACTTGCTACCTTAGAAAACTTAATTAAAGAG
GTTAAAGTAAGTTATCCATTAAAACAAGGATTGAAAC	CTGCTAGCTCTTTTCCGAACCACATTATAAAGAGGCTG
GTTAAAGTAAGTTATCCATTAAAACAAGGATTGAAAC	CTGTAAGTCCAGTCCTTTATTTCTGGATGTTTATCTATAAT
GTTAAAGTAAGTTATCCATTAAAACAAGGATTGAAAC	TTTTCTTAATGTTCCCAGTTACATCAAATTTCATTTT
GTTAAAGTAAGTTATCCATTAAAACAAGGATTGAAAC	TCTATGATAACATCTTTGATTAATCCTTTCTGTGGGTT
GTTAAAGTAAGTTATCCATTAAAACAAGGATTGAAAC	AATGGTGTATCTAATCTGGATTTCTCCATATATATCAC
GTTAAAGTAAGTTATCCATTAAAACAAGGATTGAAAC	AATCTATCGATCCAACTTTCGCTCATCCCTTCATTT
GTTAAAGTAAGTTATCCATTAAAACAAGGATTGAAAC

>NZ_AP019841|2|2|1079464-1080324|CRISPRCasFinder
GTTAAAGTAAGTTATCCATTAAAACAAGGATTGAAAC	AAAATAGAAGCCTCAACATCTGTGATGGGTTCATGTT
GTTAAAGTAAGTTATCCATTAAAACAAGGATTGAAAC	ACAATAAAGGAAGATTTAATGCTAAAAAACTTTATTATT
GTTAAAGTAAGTTATCCATTAAAACAAGGATTGAAAC	AGACGGCGAACTTGCTACCTTAGAAAACTTAATTAAAGAG
GTTAAAGTAAGTTATCCATTAAAACAAGGATTGAAAC	CTGCTAGCTCTTTTCCGAACCACATTATAAAGAGGCTG
GTTAAAGTAAGTTATCCATTAAAACAAGGATTGAAAC	CTGTAAGTCCAGTCCTTTATTTCTGGATGTTTATCTATAAT
GTTAAAGTAAGTTATCCATTAAAACAAGGATTGAAAC	TTTTCTTAATGTTCCCAGTTACATCAAATTTCATTTT
GTTAAAGTAAGTTATCCATTAAAACAAGGATTGAAAC	TCTATGATAACATCTTTGATTAATCCTTTCTGTGGGTT
GTTAAAGTAAGTTATCCATTAAAACAAGGATTGAAAC	AATGGTGTATCTAATCTGGATTTCTCCATATATATCAC
GTTAAAGTAAGTTATCCATTAAAACAAGGATTGAAAC	AATCTATCGATCCAACTTTCGCTCATCCCTTCATTT
GTTAAAGTAAGTTATCCATTAAAACAAGGATTGAAAC	AATCTATCGATCCAACTTTCGCTCATCCCTTCATTT
GTTAAAGTAAGTTATCCATTAAAACAAGGATTGAAAC	AGTATTTGCTTTATTTAATATTCCATTTATAGAAGAA
GTTAAAGTAAGTTATCCATTAAAACAAGGTTTAAAAA

>NZ_AP019841|2|1|1079464-1080324|CRT
GTTAAAGTAAGTTATCCATTAAAACAAGGATTGAAAC	AAAATAGAAGCCTCAACATCTGTGATGGGTTCATGTT
GTTAAAGTAAGTTATCCATTAAAACAAGGATTGAAAC	ACAATAAAGGAAGATTTAATGCTAAAAAACTTTATTATT
GTTAAAGTAAGTTATCCATTAAAACAAGGATTGAAAC	AGACGGCGAACTTGCTACCTTAGAAAACTTAATTAAAGAG
GTTAAAGTAAGTTATCCATTAAAACAAGGATTGAAAC	CTGCTAGCTCTTTTCCGAACCACATTATAAAGAGGCTG
GTTAAAGTAAGTTATCCATTAAAACAAGGATTGAAAC	CTGTAAGTCCAGTCCTTTATTTCTGGATGTTTATCTATAAT
GTTAAAGTAAGTTATCCATTAAAACAAGGATTGAAAC	TTTTCTTAATGTTCCCAGTTACATCAAATTTCATTTT
GTTAAAGTAAGTTATCCATTAAAACAAGGATTGAAAC	TCTATGATAACATCTTTGATTAATCCTTTCTGTGGGTT
GTTAAAGTAAGTTATCCATTAAAACAAGGATTGAAAC	AATGGTGTATCTAATCTGGATTTCTCCATATATATCAC
GTTAAAGTAAGTTATCCATTAAAACAAGGATTGAAAC	AATCTATCGATCCAACTTTCGCTCATCCCTTCATTT
GTTAAAGTAAGTTATCCATTAAAACAAGGATTGAAAC	AATCTATCGATCCAACTTTCGCTCATCCCTTCATTT
GTTAAAGTAAGTTATCCATTAAAACAAGGATTGAAAC	AGTATTTGCTTTATTTAATATTCCATTTATAGAAGAA
GTTAAAGTAAGTTATCCATTAAAACAAGGTTTAAAAA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_AP019841.1\|WP_018497786.1\|1075558_1077151_+\|phosphoglycerate-dehydrogenase	unknown	unknown	gnl\|CDD\|237436
NZ_AP019841.1\|WP_147003535.1\|1080477_1080966_+\|ribosome-maturation-factor-RimP	unknown	unknown	gnl\|CDD\|234627
NZ_AP019841.1\|WP_147003538.1\|1085977_1086346_+\|30S-ribosome-binding-factor-RbfA	unknown	unknown	gnl\|CDD\|376719
NZ_AP019841.1\|WP_147003542.1\|1091710_1094086_+\|endopeptidase-La	unknown	unknown	gnl\|CDD\|223542
NZ_AP019841.1\|WP_147003533.1\|1077884_1078778_+\|homoserine-kinase	unknown	unknown	gnl\|CDD\|234920
NZ_AP019841.1\|WP_147003541.1\|1090364_1091594_+\|ATP-dependent-Clp-protease-ATP-binding-subunit-ClpX	unknown	unknown	gnl\|CDD\|235422
NZ_AP019841.1\|WP_147003537.1\|1082893_1085959_+\|translation-initiation-factor-IF-2	unknown	unknown	gnl\|CDD\|235401
NZ_AP019841.1\|WP_147003534.1\|1078878_1079064_+\|hypothetical-protein	unknown	unknown	unknown
NZ_AP019841.1\|WP_147003530.1\|1073098_1073866_+\|OmpA-family-protein	unknown	unknown	gnl\|CDD\|143586
NZ_AP019841.1\|WP_036059259.1\|1070764_1071493_+\|amino-acid-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224051
NZ_AP019841.1\|WP_147003527.1\|1069959_1070697_+\|ABC-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|223836
NZ_AP019841.1\|WP_147003539.1\|1086549_1088241_+\|single-stranded-DNA-specific-exonuclease-RecJ	unknown	unknown	gnl\|CDD\|273193
NZ_AP019841.1\|WP_147003531.1\|1073998_1075153_-\|sporulation-integral-membrane-protein-YtvI	unknown	unknown	gnl\|CDD\|274334
NZ_AP019841.1\|WP_147003532.1\|1077178_1077853_+\|hypothetical-protein	unknown	unknown	unknown
NZ_AP019841.1\|WP_147003529.1\|1072322_1073066_+\|transporter-substrate-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|270342
NZ_AP019841.1\|WP_147003536.1\|1080965_1082165_+\|transcription-termination/antitermination-protein-NusA	unknown	unknown	gnl\|CDD\|237061
NZ_AP019841.1\|WP_147003540.1\|1088297_1089584_+\|trigger-factor	unknown	unknown	gnl\|CDD\|234956
NZ_AP019841.1\|WP_147004566.1\|1082318_1082897_+\|DUF448-domain-containing-protein	unknown	unknown	gnl\|CDD\|225350
NZ_AP019841.1\|WP_147003528.1\|1071537_1072296_+\|transporter-substrate-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|270342
NZ_AP019841.1\|WP_018450081.1\|1089746_1090322_+\|ATP-dependent-Clp-endopeptidase-proteolytic-subunit-ClpP	unknown	unknown	gnl\|CDD\|178955

Protein	Function_ID	Function_description	E-value
NZ_AP019841.1\|WP_018497786.1\|1075558_1077151_+\|phosphoglycerate-dehydrogenase	gnl\|CDD\|237436	PRK13581, PRK13581, D-3-phosphoglycerate dehydrogenase; Provisional.	0
NZ_AP019841.1\|WP_147003535.1\|1080477_1080966_+\|ribosome-maturation-factor-RimP	gnl\|CDD\|234627	PRK00092, PRK00092, ribosome maturation protein RimP; Reviewed.	4.82393e-41
NZ_AP019841.1\|WP_147003538.1\|1085977_1086346_+\|30S-ribosome-binding-factor-RbfA	gnl\|CDD\|376719	pfam02033, RBFA, Ribosome-binding factor A.	1.5723e-23
NZ_AP019841.1\|WP_147003533.1\|1077884_1078778_+\|homoserine-kinase	gnl\|CDD\|234920	PRK01212, PRK01212, homoserine kinase; Provisional.	4.20835e-105
NZ_AP019841.1\|WP_147003541.1\|1090364_1091594_+\|ATP-dependent-Clp-protease-ATP-binding-subunit-ClpX	gnl\|CDD\|235422	PRK05342, clpX, ATP-dependent Clp protease ATP-binding subunit ClpX.	0
NZ_AP019841.1\|WP_147003537.1\|1082893_1085959_+\|translation-initiation-factor-IF-2	gnl\|CDD\|235401	PRK05306, infB, translation initiation factor IF-2; Validated.	0
NZ_AP019841.1\|WP_147003528.1\|1071537_1072296_+\|transporter-substrate-binding-domain-containing-protein	gnl\|CDD\|270342	cd13624, PBP2_Arg_Lys_His, Substrate binding domain of the arginine-, lysine-, histidine-binding protein ArtJ; the type 2 periplasmic binding protein fold. This group includes the periplasmic substrate-binding protein ArtJ of the ATP-binding cassette (ABC) transport system from the thermophilic bacterium Geobacillus stearothermophilus, which is specific for arginine, lysine, and histidine. ArtJ belongs to the type 2 periplasmic-binding fold protein (PBP2) superfamily, whose members are involved in chemotaxis and uptake of nutrients and other small molecules from the extracellular space as a primary receptor. PBP2 typically comprises of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two receptor cytoplasmically-located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	1.49166e-82
NZ_AP019841.1\|WP_147003530.1\|1073098_1073866_+\|OmpA-family-protein	gnl\|CDD\|143586	cd07185, OmpA_C-like, Peptidoglycan binding domains similar to the C-terminal domain of outer-membrane protein OmpA. OmpA-like domains (named after the C-terminal domain of Escherichia coli OmpA protein) have been shown to non-covalently associate with peptidoglycan, a network of glycan chains composed of disaccharides, which are crosslinked via short peptide bridges. Well-studied members of this family include the Escherichia coli outer membrane protein OmpA, the Escherichia coli lipoprotein PAL, Neisseria meningitdis RmpM, which interact with the outer membrane, as well as the Escherichia coli motor protein MotB, and the Vibrio flagellar motor proteins PomB and MotY, which interact with the inner membrane.	1.4252e-29
NZ_AP019841.1\|WP_036059259.1\|1070764_1071493_+\|amino-acid-ABC-transporter-ATP-binding-protein	gnl\|CDD\|224051	COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism].	4.32645e-163
NZ_AP019841.1\|WP_147003527.1\|1069959_1070697_+\|ABC-transporter-permease-subunit	gnl\|CDD\|223836	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism].	2.96914e-59
NZ_AP019841.1\|WP_147003539.1\|1086549_1088241_+\|single-stranded-DNA-specific-exonuclease-RecJ	gnl\|CDD\|273193	TIGR00644, recJ, single-stranded-DNA-specific exonuclease RecJ. All proteins in this family are 5'-3' single-strand DNA exonucleases. These proteins are used in some aspects of mismatch repair, recombination, and recombinational repair. [DNA metabolism, DNA replication, recombination, and repair].	5.82554e-133
NZ_AP019841.1\|WP_147003531.1\|1073998_1075153_-\|sporulation-integral-membrane-protein-YtvI	gnl\|CDD\|274334	TIGR02872, UPF0118_membrane_protein_YtvI, sporulation integral membrane protein YtvI. Three lines of evidence show this protein to be involved in sporulation. First, it is under control of a sporulation-specific sigma factor, sigma-E. Second, mutation leads to a sporulation defect. Third, it if found in exactly those genomes whose bacteria are capable of sporulation, except for being absent in Clostridium acetobutylicum ATCC824. This protein has extensive hydrophobic regions and is likely an integral membrane protein. [Cellular processes, Sporulation and germination].	5.90744e-64
NZ_AP019841.1\|WP_147003542.1\|1091710_1094086_+\|endopeptidase-La	gnl\|CDD\|223542	COG0466, Lon, ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones].	0
NZ_AP019841.1\|WP_147003529.1\|1072322_1073066_+\|transporter-substrate-binding-domain-containing-protein	gnl\|CDD\|270342	cd13624, PBP2_Arg_Lys_His, Substrate binding domain of the arginine-, lysine-, histidine-binding protein ArtJ; the type 2 periplasmic binding protein fold. This group includes the periplasmic substrate-binding protein ArtJ of the ATP-binding cassette (ABC) transport system from the thermophilic bacterium Geobacillus stearothermophilus, which is specific for arginine, lysine, and histidine. ArtJ belongs to the type 2 periplasmic-binding fold protein (PBP2) superfamily, whose members are involved in chemotaxis and uptake of nutrients and other small molecules from the extracellular space as a primary receptor. PBP2 typically comprises of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two receptor cytoplasmically-located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	1.91184e-77
NZ_AP019841.1\|WP_147003536.1\|1080965_1082165_+\|transcription-termination/antitermination-protein-NusA	gnl\|CDD\|237061	PRK12327, nusA, transcription elongation factor NusA; Provisional.	7.62938e-148
NZ_AP019841.1\|WP_147003540.1\|1088297_1089584_+\|trigger-factor	gnl\|CDD\|234956	PRK01490, tig, trigger factor; Provisional.	4.07331e-122
NZ_AP019841.1\|WP_147004566.1\|1082318_1082897_+\|DUF448-domain-containing-protein	gnl\|CDD\|225350	COG2740, COG2740, Predicted nucleic-acid-binding protein implicated in transcription termination [Transcription].	6.31984e-08
NZ_AP019841.1\|WP_018450081.1\|1089746_1090322_+\|ATP-dependent-Clp-endopeptidase-proteolytic-subunit-ClpP	gnl\|CDD\|178955	PRK00277, clpP, ATP-dependent Clp protease proteolytic subunit; Reviewed.	7.03625e-135

>NZ_AP019841.1|WP_147003534.1|1078878_1079064_+|hypothetical-protein
MAIIVKKGELAKINKGMSQKGLAERCTYTVKEFPKSNLSKKAEEALNKIFSSMKQSYWKQI
>NZ_AP019841.1|WP_147003533.1|1077884_1078778_+|homoserine-kinase
MGLKFKVKVPGTSANIGVGYDCLGVALDYFLELEVEESNKIEFLENGKPFSIPIEENLIFEAIKYTEKHLVKNIPSYKVNIVRNDIPISRGLGSSSSAIVAGILIANKFAGNVLDINEVAKLAVEMEGHPDNVVPAIFGGMVLTAHDKENLVCSSLISSDDLCFYVMIPNFKLSTEKARSVLPKMYLVSDAINNISKLGLLVNAFNKGEYDNLRFLLGDKIHQPYRFALINNSEKIFEASKKHGALGEYISGAGPTLISLNYDNDEFLENMKKELAKLSDNWTIEKKKINLKGAEVY
>NZ_AP019841.1|WP_147003532.1|1077178_1077853_+|hypothetical-protein
MDVSKYLKELKKLIKKVDFLNYSKIIFLTVSIVLSKNNLFFITNAGLIFSILNSFVKKENDKFGNKFVFDFEIFIFQSITLFYLNRQTLLMGIKLFDIEYFSKVILNARYLNGELLFFILFGLLYIFIRKKSKAYKYYICIIVLYFCLFEDIFHTGFSLLGINYWIGLLFIFVNIIFLPTFIDFVIISLAVLYFMKDNKNYKVMYLLLIFCCIFRLSLAARLFL
>NZ_AP019841.1|WP_018497786.1|1075558_1077151_+|phosphoglycerate-dehydrogenase
MYKVLVGEYIDDEAVARLQNARDVKVDVKVGISREEILEIIHEYDALIVRSVIKVDKELLDKAKNLKIVGRAGNGTDNINIPEATAHGVIVANTPDSNTVSACEIAIGLMIASARNIVAANNFIKSGKWEREIFVGNELFEKTLGIIGLGRIGGLVATRMKAFGMKLVAYDPYISDERFKRYGCEKAKTLDELMEKADVITIHTPKTKETLDMINAENIHKLKDGVRLVNAARGGLFNEEAVAEGLRSGKIASFGYDVHAVEPRSECVLYEFDNVVTTPHIGATTYEAQRNVGTQVVKQVLNGLRGEIVETAVNLPAIGREEFLIVKPYINLAEKLGKIYFQIEKTPITNVAINYYGEIAEQETALVDSTAIKGILEPVLKEEVNYINSKPLAEKRGINISINKKDHKYKNYSSAIEFVITNEDGKKIYVVGTIGMNNEERIVSIKNHDVDMAISDNMIYLGNEDVPGVIGAVGATLGRGNINIATMNVGRRENSAIMLLTVDNEVGRRTLKALRELSQIKWAHYLDLTI
>NZ_AP019841.1|WP_147003531.1|1073998_1075153_-|sporulation-integral-membrane-protein-YtvI
MASYKNFDFKKLYFIVYIALILIVVFLAFKLGIFLFPFTIALFFSILTRPFTRFLQNKLKLSKKLSTIISIVSFLLIFFGIIGWGSLKLISEIYKLSQNLNSYSEMMQKLWTDGMGKVYAYLGNFPSGFTKQVNDTINAFISTGSAKLGTFIKGLINFITSIPTVILYICITILATFFISLDKDEIVVFLEHQFPKSWLDKVFNIKTDMFTVLGSYIKAQIILMTICFFELLICLNLLSFLGLNVPYPLLMSIIICLIDALPILGAGTVLIPWAVISFALSDIKLGVALIIIYLFVLSVRQMMEPKLVSQNLGVHPLITLISMYSGFKIFGVIGFLIGPVVMIILKNVFSKELEVGFFRDIFGDTADNKSSNNKKLKKQDKFKQ
>NZ_AP019841.1|WP_147003530.1|1073098_1073866_+|OmpA-family-protein
MKKPTLVAVSSMVAMTVPLASEKITTSEMRKDIIRPNVADIQHDVKDIPTLDTPNPEKTVPGAVSSKDNPDLITVELNQNRTGTQISKDSSSSQNSENMQQKPEEPSTVSQNAVQPETFEIQKEPISNPERVKMSSSEIISLSSDELSFHKNSIDLKKEAYPILRDVKDYIEKNDFLVSIIGYTDTSGMASYNKRLSRRRAEVVSSKLIELGLSKDRVVGIIGRGENNPAENNDTGEGRGKNRRVEFRFVKKGQV
>NZ_AP019841.1|WP_147003529.1|1072322_1073066_+|transporter-substrate-binding-domain-containing-protein
MKKIFLVLALLIFGVMSCGKKDNGDKKLRVGLNAIFAPFEYVENGKITGFDVDMINEIGKNLGYKIEIIDQSFDGLIPSLKAGKIDIIVSGMSSTEQRKKSVDFTDDYFISKETYLRRKGDKSVTPNSLSGKKIGVQLGTIQEIEARTIKGAIVVPNESTVNIILDLKAGKIDAIILEKAVATEYMKKNPEMEIFDEKPASIGMAMAIDKGKNPELIKQINAELKKMRENGKYDELIKKYGLENSQK
>NZ_AP019841.1|WP_147003528.1|1071537_1072296_+|transporter-substrate-binding-domain-containing-protein
MKKVLIVITMIVFGILSCGNKNNADNKGVKKLVVGTDGVFPPFGYIEKGELVGFDIDLIKQIGKDLGYEIEMKVQPFDALIPSLKAGKLDAIISGMSATEERKRSVDFTDEYYKSTQMFLKKKGNSQLTSKKSLAGKKIGVQLGTIQELEARKIKNANVVTNDATVNLILDLKNGKTDAVILENIVAKEFIKKNPDIEVFYEEKLPYGMAIAFNKGKNTEIIKKINEDLKKLKENGKYNELIKKYGLETGKK
>NZ_AP019841.1|WP_036059259.1|1070764_1071493_+|amino-acid-ABC-transporter-ATP-binding-protein
MIRIKNLKKKYGNLEVLKGISTEVKEGEVISIIGPSGSGKSTFLRCINRLEEPTSGEIRIDGKNILERRVDINKIREEVGMVFQHFNLYPHKTVLENITLGPIRLKKISKPEAEKLAMELLEKVGLADKRNVYPNKLSGGQKQRVAIARALAMNPKIILFDEPTSALDPEMIGEVLEVMRELAHAGMTMIVVTHEMGFAKNVANRVFFMDGGYILEDAKPADLFENPKTERAKEFLDKVLNH
>NZ_AP019841.1|WP_147003527.1|1069959_1070697_+|ABC-transporter-permease-subunit
MEDLEKTRKIIKTSFFVAVVVITVLLVFPHDMQPHEWEIYASSYFVTTLGLTVVGAAIGILFGMFLAFLKFQKTGNEVFNMIKDAVIDEYVDIMRGTPMMLQLLTLSFVIVIFNNYWVAAIALGLNSAAYVEETIRSGIESIDKGQMEAARATGMPYRMAMNEIIMPQAVKNILPALVNEFINLFKETSIVGYISVMDVTMNSKSLQAAYYSIKPILFTGVVYYVSVKLFSFIGKRLEMKLKEND
>NZ_AP019841.1|WP_147003535.1|1080477_1080966_+|ribosome-maturation-factor-RimP
MEQILNEFEKKIESHLKEMNLELADLEYVRDGGYNYLRVYVEKMDGTTTLDDCIDFSREIDGIADELIEEKFFLEVSTPGVERRLKKPKDFVRFLGEKVNVQAKSNIEGAKRFVGKLEKFEDDTIFLLDDKLGKIVEIPLSKLKKANLIYELPNGILNSEEE
>NZ_AP019841.1|WP_147003536.1|1080965_1082165_+|transcription-termination/antitermination-protein-NusA
MKGRDQKIFLEALDELEKEKGILKEELLETIETALLAAYKKNYGEKDNVKVTINRNSGDVKVYSQRLIVENVENPEEEISLEDVISVKKRAKLGDILDLEINAESFKRNAIQNAKQIVVQKVRECEKRNIFNKFKEIENSIVSANVRKTDEKGNLYVDINGLEAIVPQKELSPTDKFVQGDRIKIFIGEVEEATKFTKTFVSRKSEELLRGLLELEVPEIYEGIIEIKNIAREAGSRSKVAVYSDDKNLDVKGACIGRNGMRIQTIIDELQGEKIDIVLWNEDVKEFVKNALNPAQVLSVEVVEEGEDNLKVAKVVVAENQLSLAIGKKGQNSRLAARLCGVKIDIHTKSDEVAESDEDELEEGSAFQDTLDERENAEKNSDSFEVEESAFAGLGEDKE
>NZ_AP019841.1|WP_147004566.1|1082318_1082897_+|DUF448-domain-containing-protein
MDTVDEKKLENKEKSKPERMCVCCRRKGEKSEFFRISEQNGKYIFDREMKVQARGFYVCKTNECVERLSKNKKYNIEIEQLVKMMEQIKCEKKYIIDILKPMKNSEYFVFGIDETIDGVKKGKVKLLIIPRDIKAKYIEEFEKLKENFNFEIIFVEKKEELIRLFSRDVNVVGIFNKKVIKGILSKVEVMNG
>NZ_AP019841.1|WP_147003537.1|1082893_1085959_+|translation-initiation-factor-IF-2
MKVHELAKENGFTASKFMEEIRKFGIDKKHHMNVLSGEEVDLIRKKLQKGVQNQSQSDGSKTENLNRNEEKTAKFAAKKENDHSDSQKNSNAEHSKINNENKNINENYEKFKQPLEKNIKLNAEKKSEGINKGNLNNIKNLDNNKNQKFEKSNRLDKNENKKKMEMKVNLSNQNNKQNEINKDKQNYKNRDNRDNRENGTRNFQNRDNRNKDGFKREGRENNFRKDNKSFNKDGNNQSRDNRDSRGFQKRDNRDNRDNRENGPRNFQNRDNRNKDGFKREGRENNFRKDNRNFNRDGSNQSRDNRDNRGFQNRDNRDNRENGPRNFRDRQDNRGFSDRGGFNRDRDDFRKDNRNNFSGGRKDVQTEIPAATVAEKGKAGGKGKGKFEKKKYEKNRRDREQHEKELRSDFRKDDKKKKKNKKHEKVVKDEIIRIEGESIGMITIGDEIVIKDLAEKLGINVSDIIKKFFMEGKLLTANAILSFEEAEEVALDYEVIVEKEEVEEVSYGEKYHLEQEDKEDELITRAPVITIMGHVDHGKTSLLDALRHTNVIGDEAGGITQKIGAYQVNWKGQRITFIDTPGHEAFTEMRARGANITDISILIVAADDGVKPQTVEAISHAKEAGVPIIVAINKIDKPGADPMKVRTELTEYGLMAPDWGGNTEFVEISAKKKINLEELLETILITAELEELKANPNKRPKAVVVESRLDPKMGAVADVLVQEGTLKIGDVFVAGESHGRVRSMLDDRGKKINKAIISQPVEITGFNVVPNAGDILYGVESDKQAKKIVEDFIRERKVNEQNKKKHISLESLSQELEEQELKELKCIIRADSKGSVEALRESLEKLNTEKVVVNVIQGSAGAVTEGDVKLAEASNAIIIAFNVRPTTPARIIAEKTGVEIRNYNVIYHATEEIEKAMKGMLDPEFKEVYFGRIEVKQVFKVSNVGNVAGAAVVDGKVTKDSKIRVIRDGIIIFDGELGSLKRFKDDVKEVVMGQECGIGIQDFNDIKAGDIIESYIMEEIPR
>NZ_AP019841.1|WP_147003538.1|1085977_1086346_+|30S-ribosome-binding-factor-RbfA
MNDRRKKGLEKEISRIVGMTLLTEIKNEKIRNLVTIHKVELTKDGRYLDLTFSILDLNDNVNKEKIAEDLNKLKGFFRKKIGSQLTVRFVPEVRIHLDDSVEYGVKIASILSEIKKENSDTE
>NZ_AP019841.1|WP_147003539.1|1086549_1088241_+|single-stranded-DNA-specific-exonuclease-RecJ
MKWELKSYDKNYLVSKSSEFGESKLISRLLLNRGINTKEKVQKFLNSDKKDIHNPFLFEDMENAVKRIQKAGKNKEKIIIYGDYDVDGISGVAYLVIMLRRLGLNVDYYIPNRVHKGTGINKHVLAFLKKWDAKLFITVDTSINNLEEMMLLKDRGIDIIITDHHRKTGISENEEKNLGVLTINPKSSKNYPNKFLSGSGVAFKLADAVYEAYGANKKILYDYLDIIMIGTVADVVPMTDENRFIIKKGLNNLKKTKIKGLKYIINYLKINPKNITTSDIGFFVAPIFNALGRIDNSKIVVNFFIQEDDFKLFSIIEEMKRANKIRRYLENEIYNELEEKIQRLERPKYIFMKSRKWHSGVIGVVCSRISIKYNIPVILVSIKNGYGKASCRSIEGINIFDILKSVSDKLERFGGHDLAAGFLVSEKYLGEIERHLRNKLARKNRENVQKVLCIDAWLNIENLNKRRLHDINRLSPFGLDNQEPNFMDADVSFLNLTKFGINNRHFKGFVKKNNRIISVIGYNLGHKLKTNNFYKKKFKIVYTPIFKSVHSDLFIELKIKDFK
>NZ_AP019841.1|WP_147003540.1|1088297_1089584_+|trigger-factor
MAVKKLNETTYEVSAVREGEELKHLKDHVLVHFKDAKVDGFRPGHVPAKVIESKFKKEIEGEILNHIISDEYRKAVAENELKPIADIKLEKYENNDDKVEVVFTIPVLPAFELGQYKGVEVEKENVEVTDETVNEEIERLRESAAKLKEIAEDEEAKNDDVVNINFEGFIDGEAFDGGKAEGYDLTLGSHSFIDTFEDQIAGHKKGDEFDVNVTFPENYGAANLSGKPALFKVKVNSIKRKEEAELNDDLAKELGFDSVEDMKNKTRENITKREETRAENEFKNKVVEAVVNATEVEVPEALVQREIDYQINRFAQQLQMQGINLNQYFQMTGQTMDSMRENAKENAEKAVKTELVLAEIAKAEEIKATDEEVAKEIETLAAMYGLEKDALIADVRKNGNYERFIDETNYRLVNQKTIDLLVNEAKVK
>NZ_AP019841.1|WP_018450081.1|1089746_1090322_+|ATP-dependent-Clp-endopeptidase-proteolytic-subunit-ClpP
MSVYSPVVIENDGRGERSYDIYSRLLKDRIIFVSGEVEDGMANAIVAQLLFLDAQDNEKDIVMYINSPGGVITAGLAIYDTMRHIKSDVSTVCVGQAASMGAVLLSAGAKGKRYSLPNSRIMIHQPLGGARGQATDIQIQAKEIERMKEITSKILSEATGKSVEEIYADTERDNFMSPEEAVNYGLIDKIL
>NZ_AP019841.1|WP_147003541.1|1090364_1091594_+|ATP-dependent-Clp-protease-ATP-binding-subunit-ClpX
MAKKKNYCSFCGREEDEVERLVQSPEEDDVFICNECIEDSAELLDSFREYDKNEQNREITLLKPKEIKAKLDEYIIGQEQPKKVLSVAVYNHFKRITHKQQKKTDDDVELQKSNVLLVGPTGSGKTLLAQTLAKTLNVPLAIADATTLTEAGYVGDDVENVLLKLIKAADYDIETAEHGIIYIDEIDKIARKSENMSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPNQEMIEINTKDILFIVGGAFEGLEAKVKDRVNEKRVGFGLETNKTKLDDLTLFENVLPEDLIKFGLIPELIGRLPVITALHGLDEEAMIKILTEPKNSLVKQYKKYFEMENVDLEFDKDAIVEIAQLALKRKIGARGLRSIIESVMTDLMYEIPSKDNVKKVIITKEAVTDKDKVIVE
>NZ_AP019841.1|WP_147003542.1|1091710_1094086_+|endopeptidase-La
MQNKPFIATRELVVFPGVVTPIFIGRQSSLKSLEEAVARFDNKLILTSQKDANIEEPKFPEDVYETGVLVHIIQTVKMPNGNVKVLVEAKHRVLINQFSKDENGIIYAEYEEIFSKPIDESKAEALKRKVIDEFSKYAKKTNKVLPDIIYNIKEISSIDKVFDLICTNLMIATDVKQGLLETLDVEERAYKILSILEREIEIFMLEREIENRVKEQMAEVQKNYYLREKIKVMREEMGEGTDSDEELEELDQRVKDAKIPQDLKDKLVKELSRMKKMPDFSAESSVIRTYIETVLELPWEVSTNDEIDIKKAEKILNEDHYGLEEVKERILEFLAIKKLNNTLKGSIICLVGPPGVGKTSLAHSVARAMNRKFTRISLGGVRDEAEIRGHRRTYVGAMPGRIINSLKQVGVNNPVMLFDEIDKMASDFRGDPASAMLEVLDPAQNNSFEDHYIDHTFDLSNVFFICTANDLGGIPGPLRDRMEIISIESYTEFEKLNIAKKYLIPQTQEENGLKEFKISFSDKAVMKIINEYTREAGVRNLRREIGKLFRKIAKEILLSKSDSKKISVSEAKVKKYLGNAKFRIDKIKEKEGKIGVVNGLAWTAVGGTTLEVQAVKMEGKGVLQLTGKLGDVMKESARVAYSYVRHIKNELGIKEKFNETTDVHLHFPEGAVPKDGPSAGITITTAIISVLTNKEVRQDVAMTGEITITGEVLAVGGIKEKVIGAHRVGIRDVVLPFDNKVDTEELPKEIADQMKFYFAKTYDDVKKIVFVDKKDSEKKKEAKKSETAKEK

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Crispr_ID: NZ_AP019841_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_AP019841_3

1396550-1396657

Orphan

Consensus_repeat	Method
CTTGCAATAATGCAAGATAATTTTT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_AP019841_3

>merge|NZ_AP019841|3|1396550-1396657|CRISPRCasFinder
CTTGCAATAATGCAAGATAATTTTTAAAAAAATATAGATGTTTATTGGCTTTTTTCCATCTACAAAACTATTATACCACATAACTTGCAATAATGCAAGATATTTTTT

>NZ_AP019841|3|3|1396550-1396657|CRISPRCasFinder
CTTGCAATAATGCAAGATAATTTTT	AAAAAAATATAGATGTTTATTGGCTTTTTTCCATCTACAAAACTATTATACCACATAA
CTTGCAATAATGCAAGATATTTTTT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_AP019841.1\|WP_147003788.1\|1401841_1402135_+\|hypothetical-protein	unknown	unknown	unknown
NZ_AP019841.1\|WP_147003776.1\|1393821_1394568_-\|hypothetical-protein	unknown	unknown	unknown
NZ_AP019841.1\|WP_147003786.1\|1399255_1399828_-\|hypothetical-protein	unknown	unknown	unknown
NZ_AP019841.1\|WP_147003778.1\|1394796_1394994_-\|hypothetical-protein	unknown	unknown	unknown
NZ_AP019841.1\|WP_147003773.1\|1391327_1392209_-\|recombinase-RecT	unknown	unknown	gnl\|CDD\|226246
NZ_AP019841.1\|WP_147003787.1\|1399989_1400211_+\|hypothetical-protein	unknown	unknown	unknown
NZ_AP019841.1\|WP_147003774.1\|1392388_1393129_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|377772
NZ_AP019841.1\|WP_147003783.1\|1397157_1397580_+\|ImmA/IrrE-family-metallo-endopeptidase	unknown	unknown	gnl\|CDD\|368753
NZ_AP019841.1\|WP_147003784.1\|1397633_1397819_+\|excalibur-calcium-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|377566
NZ_AP019841.1\|WP_147003777.1\|1394598_1394787_-\|hypothetical-protein	unknown	unknown	unknown
NZ_AP019841.1\|WP_172617447.1\|1395662_1395809_-\|hypothetical-protein	unknown	unknown	unknown
NZ_AP019841.1\|WP_147003781.1\|1396175_1396523_-\|hypothetical-protein	unknown	unknown	unknown
NZ_AP019841.1\|WP_147003785.1\|1397846_1398434_+\|hypothetical-protein	unknown	unknown	unknown
NZ_AP019841.1\|WP_147004575.1\|1401167_1401833_+\|ATP-binding-protein	unknown	unknown	gnl\|CDD\|236153
NZ_AP019841.1\|WP_147003782.1\|1396728_1397148_+\|hypothetical-protein	unknown	unknown	unknown
NZ_AP019841.1\|WP_147003780.1\|1395972_1396176_-\|hypothetical-protein	unknown	unknown	unknown
NZ_AP019841.1\|WP_172617449.1\|1400299_1401181_+\|conserved-phage-C-terminal-domain-containing-protein	unknown	unknown	gnl\|CDD\|378197
NZ_AP019841.1\|WP_172617446.1\|1393131_1393800_-\|YqaJ-viral-recombinase-family-protein	unknown	unknown	gnl\|CDD\|378216
NZ_AP019841.1\|WP_172617448.1\|1398631_1398787_+\|hypothetical-protein	unknown	unknown	unknown
NZ_AP019841.1\|WP_147003779.1\|1395312_1395621_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_AP019841.1\|WP_172617449.1\|1400299_1401181_+\|conserved-phage-C-terminal-domain-containing-protein	gnl\|CDD\|378197	pfam09524, Phg_2220_C, Conserved phage C-terminus (Phg_2220_C). This entry represents the conserved C-terminal domain of a family of proteins found exclusively in bacteriophage and in bacterial prophage regions. The functions of this domain and the proteins containing it are unknown.	1.07971e-24
NZ_AP019841.1\|WP_147004575.1\|1401167_1401833_+\|ATP-binding-protein	gnl\|CDD\|236153	PRK08116, PRK08116, hypothetical protein; Validated.	1.09128e-31
NZ_AP019841.1\|WP_147003773.1\|1391327_1392209_-\|recombinase-RecT	gnl\|CDD\|226246	COG3723, RecT, Recombinational DNA repair protein (RecE pathway) [DNA replication, recombination, and repair].	9.50169e-72
NZ_AP019841.1\|WP_147003783.1\|1397157_1397580_+\|ImmA/IrrE-family-metallo-endopeptidase	gnl\|CDD\|368753	pfam06114, Peptidase_M78, IrrE N-terminal-like domain. This entry includes the catalytic domain of the protein ImmA, which is a metallopeptidase containing an HEXXH zinc-binding motif from peptidase family M78. ImmA is encoded on a conjugative transposon. Conjugating bacteria are able to transfer conjugative transposons that can, for example, confer resistance to antibiotics. The transposon is integrated into the chromosome, but during conjugation excises itself and then moves to the recipient bacterium and re-integrate into its chromosome. Typically a conjugative tranposon encodes only the proteins required for this activity and the proteins that regulate it. During exponential growth, the ICEBs1 transposon of Bacillus subtilis is inactivated by the immunity repressor protein ImmR, which is encoded by the transposon and represses the genes for excision and transfer. Cleavage of ImmR relaxes repression and allows transfer of the transposon. ImmA has been shown to be essential for the cleavage of ImmR. This domain is also found in in metalloprotease IrrE, a central regulator of DNA damage repair in Deinococcaceae, HTH-type transcriptional regulators RamB and PrpC.	1.67499e-14
NZ_AP019841.1\|WP_172617446.1\|1393131_1393800_-\|YqaJ-viral-recombinase-family-protein	gnl\|CDD\|378216	pfam09588, YqaJ, YqaJ-like viral recombinase domain. This protein family is found in many different bacterial species but is of viral origin. The protein forms an oligomer and functions as a processive alkaline exonuclease that digests linear double-stranded DNA in a Mg(2+)-dependent reaction, It has a preference for 5'-phosphorylated DNA ends. It thus forms part of the two-component SynExo viral recombinase functional unit.	1.16609e-35
NZ_AP019841.1\|WP_147003784.1\|1397633_1397819_+\|excalibur-calcium-binding-domain-containing-protein	gnl\|CDD\|377566	pfam05901, Excalibur, Excalibur calcium-binding domain. Extracellular Ca2+-dependent nuclease YokF from Bacillus subtilis and several other surface-exposed proteins from diverse bacteria are encoded in the genomes in two paralogous forms that differ by a ~45 amino acid fragment, which comprises a novel conserved domain. Sequence analysis of this domain revealed a conserved DxDxDGxxCE motif, which is strikingly similar to the Ca2+-binding loop of the calmodulin-like EF-hand domains, suggesting an evolutionary relationship between them. Functions of many of the other proteins in which the novel domain, named Excalibur (extracellular calcium-binding region), is found, as well as a structural model of its conserved motif are consistent with the notion that the Excalibur domain binds calcium. This domain is but one more example of the diversity of structural contexts surrounding the EF-hand-like calcium-binding loop in bacteria. This loop is thus more widespread than hitherto recognized and the evolution of EF-hand-like domains is probably more complex than previously appreciated.	6.06803e-18
NZ_AP019841.1\|WP_147003774.1\|1392388_1393129_-\|hypothetical-protein	gnl\|CDD\|377772	pfam07083, DUF1351, Protein of unknown function (DUF1351). This family consists of several bacterial and phage proteins of around 230 residues in length. The function of this family is unknown.	0.00286899

>NZ_AP019841.1|WP_147003781.1|1396175_1396523_-|hypothetical-protein
MSFSEGLKYEEGARKKIIREWAEENCFGYPQQGIAKMEYYESGFKELKKRIPDVTEDEIKGFEYDGIYDEYELSPSEYGNEDLIKIMKKSDMIHNVSNIKCVIVGRKRKFSLGEM
>NZ_AP019841.1|WP_147003780.1|1395972_1396176_-|hypothetical-protein
MDKMCELAKTISDLKLTKCEIRKGLSGFEVLTISKRCKLTVNETCELIERLLENNTNIKFLKNEVTK
>NZ_AP019841.1|WP_172617447.1|1395662_1395809_-|hypothetical-protein
MKFGALKIVNENSQKAREEIEAKKFKNRIKKLFNKKQPKRLILNPDWK
>NZ_AP019841.1|WP_147003779.1|1395312_1395621_-|hypothetical-protein
MDKILIKKNRRKQNEKRIKKIEKFVKQNCGNFAYDEEIGTKEIKELKGLTIISEYRGWDQKYGEPAFETKIFNKAGIELAYKEFLPVFSYEEFVGNDDWYIF
>NZ_AP019841.1|WP_147003778.1|1394796_1394994_-|hypothetical-protein
MQNFRKLPAMKRKIAGASNKLGKMNEMIEKIKNDSEIDENIKKLMEQNLRYYVQKEYGIDAGFKK
>NZ_AP019841.1|WP_147003777.1|1394598_1394787_-|hypothetical-protein
MTSEKNLIKSIILIVATALMQIATIEAKGHWIIGGNVAFPFLVVMLLWWCPRAVKEFMGSCK
>NZ_AP019841.1|WP_147003776.1|1393821_1394568_-|hypothetical-protein
MGVLKKAKKKKIRKEIIEKAVTTKEIFKDENRKSKIMIMMSLSNLCKSYRNYFKIPKITDKNLESGDTKIEKITEEQTLWCTFSLEDIIQRSFRALTRLINEFEFEDLHNPEQTVIKDFKNEFIIVHFRKMFEQELMEIKSKFKIYSKTRYNTTETALHQMFIIFAYYKIFKREVEQRKFSKITGMYLKTLITKTNRKFKEIEEVIKENEKTDFEKDMLELLKFEEAGFKIKWAGYSRKQALKLRSRA
>NZ_AP019841.1|WP_172617446.1|1393131_1393800_-|YqaJ-viral-recombinase-family-protein
MNYKAISYKNEEEWLSIRKKGIGGSDAGAIMGKNKYRNIIDVWKDKTGRIQNNFASPAAQRGKNLEKNIFNSYKEDNLDKKILEVNKMYIHPKYDFIRANLDGEIVYQDKKGILEIKTTTINKWNKYVEEWQNNIPETYLYQILHYFLVTGYEYAVLVAEIKFECFKNEDTTPFDLDKRLQTIVINRSDWEDEIQELLNKEIEFWECVKNDTEPRMIKSYGG
>NZ_AP019841.1|WP_147003774.1|1392388_1393129_-|hypothetical-protein
MEKIIETSLVALPKMEFVFDSEKITPAKIDKDMIDFEKAEQKVEEIEKLYNIVFTDVKDIKKYREEVASTKSSAEKFKKDLMDYLTADTKEINQKLINLIKRVDAVRKYLHDKEKELDNAKREKIKSIKEFVFKYRPEYLVYLVENKKWENKTFKEDDIETEMQRQYDELIRKEDFIKQEIEKANKEIKFKIVFESMKYLIQEDYTVISKAINDKMNEIKQTEENLRIRAEEENKEKSLNLKEKRN
>NZ_AP019841.1|WP_147003773.1|1391327_1392209_-|recombinase-RecT
MAGTLTNPKKQTKGIVGAATLKSMINDERTKNKFKELLGNKAAGFLTSLLNTTNGNKQLQEAEPQSVLKAGAIAATLDLPIDPNLGFAYVVPYKRKYKDNRGNWQEKNEAQFQLGYKGFIQLAIRTGQYKKINVTELYEGQFESYDPITDELKYNLDGKISDEVTHYIAYFQTTNGFEKYNVMSKEEVREHAKKFSKTFLKSSSSWQTNFDSMAKKTVLKLLLSKFGILSIEMQTAQKVDQAVIKEVEPNGNVEVEYVDSPDNASDIVEEETADNDTQSDNEIVENFNSEDLF
>NZ_AP019841.1|WP_147003782.1|1396728_1397148_+|hypothetical-protein
MEDKEKLRKIIKETRLQKNIARDKISELLKKRGIKYAESSLSRYENGITESIKAEVLKGISEILGLDVIEMYKLAGLLNENEDIRFAKLNKRERDQYSEIEKGAAYFFNDNSISDEDKKRLHDSLQELFFDAKMKNKRK
>NZ_AP019841.1|WP_147003783.1|1397157_1397580_+|ImmA/IrrE-family-metallo-endopeptidase
MRKRRNMKLRVKNLVEKYNTSNPYILCEKLNIEIRYFYYEGIKGFFRRILKRKYIVINEKLDEYSKLVVLCHELGHAIYHSSKNKLLMKINFFNYNPELENEANEFAAELMKYQEEVSYEVARNCDLGLQVLEEMKRYIK
>NZ_AP019841.1|WP_147003784.1|1397633_1397819_+|excalibur-calcium-binding-domain-containing-protein
MKKLFVILTLAFISTNAFTETLYFKNCKEARSKGYKNIKKGEPGYARHLDRDRDGIACESK
>NZ_AP019841.1|WP_147003785.1|1397846_1398434_+|hypothetical-protein
MKKMLLILCLGVLIASCGDGKGVELKETKANKKVEKENTQTEAYEVELSAGHYVVGVDIPAGIYDITAIKGTGNVSSSNMYDGGINQVMGTQDDGVSVKEFKNLKLDKKDISITVNGTAVIKLSSKAAQTKNLKPKENPAKKEYTFSSGNYVVGKDIERGIYDVIAVKGNGNISSDNMFEGGINEVLVRAGTDSM
>NZ_AP019841.1|WP_172617448.1|1398631_1398787_+|hypothetical-protein
MKIDKYTQIRMKMIEKKIYWKDIMDKIGYSNWGLRLAIKNNNSEIIKKVEK
>NZ_AP019841.1|WP_147003786.1|1399255_1399828_-|hypothetical-protein
MMNYPSVQRMQQIFDNYPKINEFREKVYYSNLNIQMPIQIMDSQLQIIKNYSEVYSKTYNWNNIISSAIGAYNSTQEEEFEVVIENFPVIFLKPRLNEYIRIFQNLEIPENISVYLGFASYIFLWLAPYATFVPALEPVLLEVLKWIVEVLKSFGVIVLEYKTPKKFAELTFSIGTPAFISFIFRKLSKK
>NZ_AP019841.1|WP_147003787.1|1399989_1400211_+|hypothetical-protein
MFKEFLEKCLRYENLYILEETGNREKIKRVSKRHGKVTGASILLFDSRTKRTTVNEIYFNSQGYFIIRGSEKD
>NZ_AP019841.1|WP_172617449.1|1400299_1401181_+|conserved-phage-C-terminal-domain-containing-protein
MFKNTIYREREKMRFSTYLNNAKCMEWQIKATQGILFSLLYEAPAWAKEEIIENKTYYFVSRNLILDELPMFFEKSDTVYRNLKALQEKGLIEYIKQGKKDLIRITAKGKTWNEFKENNSEKNPSFEENSEKNPNNLGKKSEKESKNSEKNPTNNNTIYNYNNTNILNNIYSSVIDYLNRKTERTGKEKYSSTSPKTQKLIKARLREKYELEDFKTVIDKKCKEWLGTDMEKYLRPETLFGNKFESYLKQKTGGNNNGNTRNKRSYTGNAEKKGFDKHNDYKPDYSKGFDDWN
>NZ_AP019841.1|WP_147004575.1|1401167_1401833_+|ATP-binding-protein
MTGISAPSVSASIFKEKEIEKYMGLSKLMEQDWHKRFENAEVKSTKEMEFKKSFEKYCKNFEIIKQKGLGILMSGNPGTGKTYYTTCIMNVLNQKYLVYKTTLSDLLEEIRKSYKSFENENDDFLFSRLSKAELIIFDDLGNEFLSDWGKEKMFMILNFIYENNKPLIINTNLDAKQLSSFFNINGSDKLLDRIRSKCKTYIFSWESRRKDLYKKDFEELY
>NZ_AP019841.1|WP_147003788.1|1401841_1402135_+|hypothetical-protein
MDKINQLEGKVICFKGLPEDFFEQTEKLKKIFEEKNMKKEELVFILETLELQEIKAEKSVEQRSLIYKEILFLIFLSIVIAIITTITILLVRKLLIL

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Crispr_ID: NZ_AP019841_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_AP019841_4

1501556-1501742

TypeV

Consensus_repeat	Method
GGGTTAAAGTAGAGTATCCATTAAAATAAGGGTGAAAAC	PILER-CR
GTTTTCACCCTTATTTTAATGGATACTCTACTTTAAC	CRISPRCasFinder

2 spacers

The CRISPR arrays of NZ_AP019841_4

>merge|NZ_AP019841|4|1501556-1501742|PILER-CR,CRISPRCasFinder
GTTTTCACCCTTATTTTAATGGATACTCTACTTTAACACCTTGTTAAAAAATTAGATTTGCTACATACTGAATACGTTTTCACCCTTATTTTAATGGATACTCTACTTTAACCTCTAGAACAAGGTATGGTTAAATTCTCTAAATCAGGTTTTCACCCTTATTTTAATGGATACTCTACTTTAACCC

>NZ_AP019841|4|2|1501556-1501742|PILER-CR
GTTTTCACCCTTATTTTAATGGATACTCTACTTTAACAC	CTTGTTAAAAAATTAGATTTGCTACATACTGAATAC
GTTTTCACCCTTATTTTAATGGATACTCTACTTTAACCT	CTAGAACAAGGTATGGTTAAATTCTCTAAATCAG
GTTTTCACCCTTATTTTAATGGATACTCTACTTTAACCC

>NZ_AP019841|4|4|1501556-1501740|CRISPRCasFinder
GTTTTCACCCTTATTTTAATGGATACTCTACTTTAAC	ACCTTGTTAAAAAATTAGATTTGCTACATACTGAATAC
GTTTTCACCCTTATTTTAATGGATACTCTACTTTAAC	CTCTAGAACAAGGTATGGTTAAATTCTCTAAATCAG
GTTTTCACCCTTATTTTAATGGATACTCTACTTTAAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_AP019841.1\|WP_147003890.1\|1491906_1492173_+\|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin	unknown	unknown	gnl\|CDD\|224937
NZ_AP019841.1\|WP_147003903.1\|1499908_1501411_+\|4-alpha-glucanotransferase	unknown	unknown	gnl\|CDD\|237738
NZ_AP019841.1\|WP_147003897.1\|1496002_1496710_+\|UTRA-domain-containing-protein	unknown	unknown	gnl\|CDD\|225099
NZ_AP019841.1\|WP_147003899.1\|1496945_1498541_-\|PTS-transporter-subunit-EIIC	unknown	unknown	gnl\|CDD\|273925
NZ_AP019841.1\|WP_147003905.1\|1502897_1503896_-\|phosphoribosylformylglycinamidine-cyclo-ligase	unknown	unknown	gnl\|CDD\|235439
NZ_AP019841.1\|WP_147003901.1\|1498833_1499625_-\|endonuclease/exonuclease/phosphatase-family-protein	unknown	unknown	gnl\|CDD\|197313
NZ_AP019841.1\|WP_147003911.1\|1505809_1506526_-\|phosphoribosylaminoimidazolesuccinocarboxamide-synthase	unknown	unknown	gnl\|CDD\|181800
NZ_AP019841.1\|WP_147003919.1\|1511924_1513286_-\|sodium/proline-symporter-PutP	unknown	unknown	gnl\|CDD\|273981
NZ_AP019841.1\|WP_147003894.1\|1494377_1495700_-\|6-phospho-alpha-glucosidase	unknown	unknown	gnl\|CDD\|133434
NZ_AP019841.1\|WP_147003888.1\|1491098_1491596_+\|methylated-DNA--[protein]-cysteine-S-methyltransferase	unknown	unknown	gnl\|CDD\|234860
NZ_AP019841.1\|WP_147003907.1\|1503932_1504220_-\|GTP-cyclohydrolase	unknown	unknown	gnl\|CDD\|225225
NZ_AP019841.1\|WP_147003886.1\|1489221_1490925_+\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|313108
NZ_AP019841.1\|WP_147003915.1\|1507195_1511002_-\|phosphoribosylformylglycinamidine-synthase	unknown	unknown	gnl\|CDD\|130916
NZ_AP019841.1\|WP_147003913.1\|1506695_1507175_-\|5-(carboxyamino)imidazole-ribonucleotide-mutase	unknown	unknown	gnl\|CDD\|376377
NZ_AP019841.1\|WP_147004581.1\|1491680_1491917_+\|hypothetical-protein	unknown	unknown	unknown
NZ_AP019841.1\|WP_147003921.1\|1514823_1515309_-\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|379240
NZ_AP019841.1\|WP_147003892.1\|1492341_1494081_-\|alpha-glucosidase-C-terminal-domain-containing-protein	unknown	unknown	gnl\|CDD\|200472
NZ_AP019841.1\|WP_147003917.1\|1511495_1511822_+\|ribosome-associated-translation-inhibitor-RaiA	unknown	unknown	gnl\|CDD\|238308
NZ_AP019841.1\|WP_147003909.1\|1504229_1505681_-\|amidophosphoribosyltransferase	unknown	unknown	gnl\|CDD\|235984
NZ_AP019841.1\|WP_147004582.1\|1502263_1502857_-\|phosphoribosylglycinamide-formyltransferase	unknown	unknown	gnl\|CDD\|187714

Protein	Function_ID	Function_description	E-value
NZ_AP019841.1\|WP_147003890.1\|1491906_1492173_+\|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin	gnl\|CDD\|224937	COG2026, RelE, Cytotoxic translational repressor of toxin-antitoxin stability system [Translation, ribosomal structure and biogenesis / Cell division and chromosome partitioning].	4.32882e-14
NZ_AP019841.1\|WP_147003903.1\|1499908_1501411_+\|4-alpha-glucanotransferase	gnl\|CDD\|237738	PRK14508, PRK14508, 4-alpha-glucanotransferase; Provisional.	0
NZ_AP019841.1\|WP_147003897.1\|1496002_1496710_+\|UTRA-domain-containing-protein	gnl\|CDD\|225099	COG2188, PhnF, Transcriptional regulators [Transcription].	9.16018e-53
NZ_AP019841.1\|WP_147003899.1\|1496945_1498541_-\|PTS-transporter-subunit-EIIC	gnl\|CDD\|273925	TIGR02005, PTS-IIBC-alpha, PTS system, alpha-glucoside-specific IIBC component. This model represents a family of fused PTS enzyme II B and C domains. A gene from Clostridium has been partially characterized as a maltose transporter, while genes from Fusobacterium and Klebsiella have been proposed to transport the five non-standard isomers of sucrose. [Transport and binding proteins, Carbohydrates, organic alcohols, and acids].	0
NZ_AP019841.1\|WP_147003905.1\|1502897_1503896_-\|phosphoribosylformylglycinamidine-cyclo-ligase	gnl\|CDD\|235439	PRK05385, PRK05385, phosphoribosylaminoimidazole synthetase; Provisional.	0
NZ_AP019841.1\|WP_147003901.1\|1498833_1499625_-\|endonuclease/exonuclease/phosphatase-family-protein	gnl\|CDD\|197313	cd09079, RgfB-like, Streptococcus agalactiae RgfB, part of a putative two component signal transduction system, and related proteins. This family includes Streptococcus agalactiae RgfB (for regulator of fibrinogen binding) and related proteins. The function of RgfB is unknown. It is part of a putative two component signal transduction system designated rgfBDAC (the rgf locus was identified in a screen for mutants of Streptococcus agalactiae with altered binding to fibrinogen). RgfA,-C,and -D do not belong to this superfamily: rgfA encodes a putative response regulator, and rgfC, a putative histidine kinase. All four genes are co-transcribed, and may be involved in regulating expression of bacterial cell surface components. This family belongs to the large EEP (exonuclease/endonuclease/phosphatase) superfamily that contains functionally diverse enzymes that share a common catalytic mechanism of cleaving phosphodiester bonds.	1.53739e-112
NZ_AP019841.1\|WP_147003911.1\|1505809_1506526_-\|phosphoribosylaminoimidazolesuccinocarboxamide-synthase	gnl\|CDD\|181800	PRK09362, PRK09362, phosphoribosylaminoimidazole-succinocarboxamide synthase; Reviewed.	4.65936e-139
NZ_AP019841.1\|WP_147003919.1\|1511924_1513286_-\|sodium/proline-symporter-PutP	gnl\|CDD\|273981	TIGR02121, Osmoregulated_proline_transporter, sodium/proline symporter. This family consists of the sodium/proline symporter (proline permease) from a number of Gram-negative and Gram-positive bacteria and from the archaeal genus Methanosarcina. Using the related pantothenate permease as an outgroup, candidate sequences from Bifidobacterium longum and several from archaea are found to be outside the clade defined by known proline permeases. These sequences, scoring between 570 and -40, define the range between trusted and noise cutoff scores. [Transport and binding proteins, Amino acids, peptides and amines].	0
NZ_AP019841.1\|WP_147003894.1\|1494377_1495700_-\|6-phospho-alpha-glucosidase	gnl\|CDD\|133434	cd05298, GH4_GlvA_pagL_like, Glycoside Hydrolases Family 4; GlvA- and pagL-like glycosidases. Bacillus subtilis GlvA and Clostridium acetobutylicum pagL are 6-phospho-alpha-glucosidase, catalyzing the hydrolysis of alpha-glucopyranoside bonds to release glucose from oligosaccharides. The substrate specificities of other members of this subgroup are unknown. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP_PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases, which include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. Members of this subfamily are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.	0
NZ_AP019841.1\|WP_147003888.1\|1491098_1491596_+\|methylated-DNA--[protein]-cysteine-S-methyltransferase	gnl\|CDD\|234860	PRK00901, PRK00901, methylated-DNA--protein-cysteine methyltransferase; Provisional.	1.20459e-76
NZ_AP019841.1\|WP_147003907.1\|1503932_1504220_-\|GTP-cyclohydrolase	gnl\|CDD\|225225	COG2350, COG2350, Uncharacterized protein conserved in bacteria [Function unknown].	1.55389e-19
NZ_AP019841.1\|WP_147003886.1\|1489221_1490925_+\|AAA-family-ATPase	gnl\|CDD\|313108	pfam09820, AAA-ATPase_like, Predicted AAA-ATPase. This family contains many hypothetical bacterial proteins. This family was previously the N-terminal part of the Pfam DUF1703 (pfam08011) family before it was split into two. This region is predicted to be an AAA-ATPase domain.	3.01589e-67
NZ_AP019841.1\|WP_147003915.1\|1507195_1511002_-\|phosphoribosylformylglycinamidine-synthase	gnl\|CDD\|130916	TIGR01857, FGAM-synthase, phosphoribosylformylglycinamidine synthase, clade II. This model represents a single-molecule form of phosphoribosylformylglycinamidine synthase, also called FGAM synthase, an enzyme of purine de novo biosynthesis. This model represents a second clade of these enzymes found in Clostridia, Bifidobacteria and Streptococcus species. This enzyme performs the fourth step in IMP biosynthesis (the precursor of all purines) from PRPP. [Purines, pyrimidines, nucleosides, and nucleotides, Purine ribonucleotide biosynthesis].	0
NZ_AP019841.1\|WP_147003913.1\|1506695_1507175_-\|5-(carboxyamino)imidazole-ribonucleotide-mutase	gnl\|CDD\|376377	pfam00731, AIRC, AIR carboxylase. Members of this family catalyze the decarboxylation of 1-(5-phosphoribosyl)-5-amino-4-imidazole-carboxylate (AIR). This family catalyze the sixth step of de novo purine biosynthesis. Some members of this family contain two copies of this domain.	3.92624e-78
NZ_AP019841.1\|WP_147003921.1\|1514823_1515309_-\|GNAT-family-N-acetyltransferase	gnl\|CDD\|379240	pfam13527, Acetyltransf_9, Acetyltransferase (GNAT) domain. This domain catalyzes N-acetyltransferase reactions.	3.41998e-09
NZ_AP019841.1\|WP_147003892.1\|1492341_1494081_-\|alpha-glucosidase-C-terminal-domain-containing-protein	gnl\|CDD\|200472	cd11333, AmyAc_SI_OligoGlu_DGase, Alpha amylase catalytic domain found in Sucrose isomerases, oligo-1,6-glucosidase (also called isomaltase; sucrase-isomaltase; alpha-limit dextrinase), dextran glucosidase (also called glucan 1,6-alpha-glucosidase), and related proteins. The sucrose isomerases (SIs) Isomaltulose synthase (EC 5.4.99.11) and Trehalose synthase (EC 5.4.99.16) catalyze the isomerization of sucrose and maltose to produce isomaltulose and trehalulose, respectively. Oligo-1,6-glucosidase (EC 3.2.1.10) hydrolyzes the alpha-1,6-glucosidic linkage of isomaltooligosaccharides, pannose, and dextran. Unlike alpha-1,4-glucosidases (EC 3.2.1.20), it fails to hydrolyze the alpha-1,4-glucosidic bonds of maltosaccharides. Dextran glucosidase (DGase, EC 3.2.1.70) hydrolyzes alpha-1,6-glucosidic linkages at the non-reducing end of panose, isomaltooligosaccharides and dextran to produce alpha-glucose.The common reaction chemistry of the alpha-amylase family enzymes is based on a two-step acid catalytic mechanism that requires two critical carboxylates: one acting as a general acid/base (Glu) and the other as a nucleophile (Asp). Both hydrolysis and transglycosylation proceed via the nucleophilic substitution reaction between the anomeric carbon, C1 and a nucleophile. Both enzymes contain the three catalytic residues (Asp, Glu and Asp) common to the alpha-amylase family as well as two histidine residues which are predicted to be critical to binding the glucose residue adjacent to the scissile bond in the substrates. The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase.	0
NZ_AP019841.1\|WP_147003917.1\|1511495_1511822_+\|ribosome-associated-translation-inhibitor-RaiA	gnl\|CDD\|238308	cd00552, RaiA, RaiA ("ribosome-associated inhibitor A", also known as Protein Y (PY), YfiA, and SpotY, is a stress-response protein that binds the ribosomal subunit interface and arrests translation by interfering with aminoacyl-tRNA binding to the ribosomal A site. RaiA is also thought to counteract miscoding at the A site thus reducing translation errors. The RaiA fold structurally resembles the double-stranded RNA-binding domain (dsRBD).	3.03122e-28
NZ_AP019841.1\|WP_147003909.1\|1504229_1505681_-\|amidophosphoribosyltransferase	gnl\|CDD\|235984	PRK07272, PRK07272, amidophosphoribosyltransferase; Provisional.	0
NZ_AP019841.1\|WP_147004582.1\|1502263_1502857_-\|phosphoribosylglycinamide-formyltransferase	gnl\|CDD\|187714	cd08645, FMT_core_GART, Phosphoribosylglycinamide formyltransferase (GAR transformylase, GART). Phosphoribosylglycinamide formyltransferase, also known as GAR transformylase or GART, is an essential enzyme that catalyzes the third step in de novo purine biosynthesis. This enzyme uses formyl tetrahydrofolate as a formyl group donor to produce 5'-phosphoribosyl-N-formylglycinamide. In prokaryotes, GART is a single domain protein but in most eukaryotes it is the C-terminal portion of a large multifunctional protein which also contains GAR synthetase and aminoimidazole ribonucleotide synthetase activities.	4.28359e-91

>NZ_AP019841.1|WP_147003903.1|1499908_1501411_+|4-alpha-glucanotransferase
MFERSSGILLHPTSLPGKYGIGTLGKEAFAFVDFLKKSNQKLWQIFPLGPTGYGDSPYQSFSTFAGNPYLIDFDLLVEENLLSQSDLEGISFGENPENVDYGAIYNQKYPLLRKAYENYKNTKENKEREELKYLFEEFKAHNQSWLNDFAMYISLKNHFNGLPWNEWPEDIKSRQPEAMEKYYETVKEEVEYQKFIQFLFFKQWNAVKKYANENGVKIIGDIPIFVAADSSDAWANPEIFLFDEERKPVKVAGVPPDYFSATGQLWGNPLYNWDKLKELNYKWWIDRVKANLSTCDIIRIDHFRGFDEYWAVPYGDKTAENGTWCPGPRMDLFDAIKNELGELPIIAEDLGTMTQGVIDLREATGFPGMKILGFAFDSKEENDYLPHTYTKNCVVYTGTHDNDTLIGWFTKANENDKQFARDYLNSRSDDEIHWDAIRGAWSSVASMAIVPIQDFLGLGSEARINTPGLASGNWQWRLKEGVLTDELAERIAKLTKVYSR
>NZ_AP019841.1|WP_147003901.1|1498833_1499625_-|endonuclease/exonuclease/phosphatase-family-protein
MKILTINVHAWLEKNQMEKIDILAKAIAEKQYDVIAMQEVNQLMNNPVIFDDIRQENYGWVLLEKLQEYTDTDYYYHWSNSHIGYGKYNEGVAIITRHKIKEEDEFYCTFAQSVRTISSRRIVSITIDYNGQEIEFYSCHMNLPNCETEDMGKSIQNILTRTKNDNLKILMGDFNTDAIGSSEDYKNIISQGLFDTYTLAEKKDSGITVDKSIDGWANDKSQKRIDYIFSNKEIKVKESKVIFNNENKKIVSDHFGVEVEIEL
>NZ_AP019841.1|WP_147003899.1|1496945_1498541_-|PTS-transporter-subunit-EIIC
MMKKIQRFGGAMMAPVLLFAFTGIVVGIASLFTNPQVMGSIANEGTNWYKFWFVISEGGWTVFRQMPLLFAIGLPISLANKTNARACLEAFALYTTYNYFVAAMLAQWSFFGVDMSKEAGGTSGLAVIAGVKTLDTNLFGAIIISAIVVYLHNKYFDKKLPDFLGVFQGTVFVYIIGFLVMIPCAFITALCWPKVQIGINNLQQLLKVSGPIGVWIYTFLERALIPTGLHHFVYTPFIFGPAAVPGGIQTYWVQHISQFAQSTRPLKEMFPQGGFALHGNSKIFGSVGIALAMYSTAKPENKRKVAGLLLPVLLTAIVSGITEPLEFTFLFIAPVLFGLHAVLAATMSTLMYMFGVVGNFGGGFLDFMFLNWIPMFKNHSGTVITQIVIGLIFTCIYFVLFRFLILKMDLKTPGREDEDEEMKLYTKADYRAKHGEGGAQGAAAVAGGDEYAQKGAIILEALGGRENIEELNNCATRLRVSVKDASKLLPDAAFKAAGAHGVVRKGTAIQVIIGLSVPQVRERIEEMMKKG
>NZ_AP019841.1|WP_147003897.1|1496002_1496710_+|UTRA-domain-containing-protein
MKKYEKVYQDIKEKIKNGELKPGDFLKKEDDLAEEYNFSKLTVRKALSMLETEGRIQKVKGKKSIILEKKNLENISLTSIQTTQELNKIQNIHLEKELISLYIVQGVKELMDKFQVSENADFYKVVRTTSLNGEVLNYSTSFFDRRIVPFLNEKIAKNSIYEYLEKELKLKIAYSRREIKFRKITSEEQKYFKLKDINMVVVIETHAYLSNGTLFQYETIIHHPEKFTFTAIAKR
>NZ_AP019841.1|WP_147003894.1|1494377_1495700_-|6-phospho-alpha-glucosidase
MKKFSIVVAGGGSTFTPGIVLMLLDNLDKFPIRQIKFYDNDAERQEVIAKACDIIIKEKAPDINFVYTTDPETAFTDVDFVMAHIRVGKYAMREKDEKIPLKHGVLGQETCGPGGIAYGMRSIGGVIELVDFMEKYSPNAWMLNYSNPAAIVAEATRRLRPNSKILNICDMPIGIEIRMAEMLGLKSRKDMVIRYFGLNHFGWWTDIRDKHGKDLMPELKEKVAKIGYNVEIEGENTEASWNDTFTKARDVFAIDPTTMPNTYLKYYFFPDYVVEHSDPNHTRANEVMEGREKFVFGECRAIAEKGTAKDSKLHVDDHASYIVDLARAIAYDTKERMLLIVENDGALSNFDPTAMVEVPCLVGSNGPEKIVQGKIPQFQKGLMEQQVSVEKLTVEAWIEGSYQKLWQAITLSRTVPSASVAKAILDDLIEANKDFWPVLK
>NZ_AP019841.1|WP_147003892.1|1492341_1494081_-|alpha-glucosidase-C-terminal-domain-containing-protein
MDIKKLDKKWRKKEVGYQIYPRSFYDSNNDGIGDLNGITEKLDYLKNLGITLIWVCPIFKSPMDDNGYDISDYYDVNPEFGTKEDLEKLIAEAEKRGIKVILDLVINHTSDEHEWFLEALKNPESKYRNYYIFKRGENGLPPTNWRSHFGGSAWEKVEGEADENGNEMYYLHLFTKKQPDLNWENPEVRKELYEMVNYWLEKGIAGFRVDAINSIKKDARYLDLPVDGADGMAYNVEYTLNQPGIEEFLSELAKETFKKYNAMTVAETPMLEYERYNDFIGEDGFFTMIFDFSYADLDMTKGGFYYSLRDIPTIELRDAIFESQLTQQKYGWGAPFFENHDLPRSLNKFFGEKANETNAKLLANVFFFLRGTPFIYQGQEIGMDNFVRNDISEFDDIASKDQYQRALGEGFSSEEALYFVNKRSRDNSRTPMQWDNSKNAGFSKDENSKSWIKLTGSQATTNVADQINDKDSIFSHYKKMIDLRQNGKYSDCLTFGDFISVPLENEKIIAYVRKYGNQKVLCISNFSELKQEVKLSEIAKALGEKEIKIGEILINNFDGFENNGEKVIFEGFQSLLVEI
>NZ_AP019841.1|WP_147003890.1|1491906_1492173_+|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin
MKYKVIIREKAEKQLNKLDNSIKLKIMRYIKQNLNETDNPKKFGKALRYNLKGFWRYRVENYRIIVKIEENELLILVVQIDKRDKIYI
>NZ_AP019841.1|WP_147004581.1|1491680_1491917_+|hypothetical-protein
MITVSINANPDIENKINNYVKENNINLNQVMLDLILEKIEDEEDYKLAVEAYEEYKANKEKAISFDDLVKKMGLEDEI
>NZ_AP019841.1|WP_147003888.1|1491098_1491596_+|methylated-DNA--[protein]-cysteine-S-methyltransferase
MKKNIYFYETNTPIGKIGIATTEDDSHITDLTWESDFENLIKENDFQICETELIKQAKKQLFEYFEKKRKNFDLPLLKEGTPFQISVWSALEKIPYGETCSYKDIAIAIDNPKAVRAVGMANNRNKIAIFIPCHRVIGADGKLVGYGGGLHIKRFLLELEGIKIK
>NZ_AP019841.1|WP_147003886.1|1489221_1490925_+|AAA-family-ATPase
MGNRKKKKLPIGISDFKEIIENNYYYFDKTKFIENILEDGSKVKLFTRPRRFGKTLNISMLKYFFDIKNKDENRKLFENLEISKSEYFEKQGNFFVISISFKNYDAESWESGFNTIKNEIKLLYNEFYLIRDNLNQSDLADFDAIWLKKDNADWINSLFNLTRYLYEISGKKVVVLIDEYDQPIIDSYIKGNYEKCIAFFKAFYGKVLKDNNYLEMGILTGILRVAKENVFSGLNNLEVHTILDDEFTEYFGIMENEVEKSLEDFDLKYELNDVQKWYNGYLFGEKKVYNPWSIINFLKNEKLKPYWVNTSGNGLINLYLQKLKNDVFDDFSKLLNKENILKKINNNMTFENLKTNFGKNIWNLFFHSGYLTLADKYDVMKKNASIKIPNKEILEMFSEMFIEIYFKDSETFLDMTDALTTGNIEKFKFELNKILLENIGIFDVIGIYKEQFYHGLMLGLILMLKNEYEISSNNFAGKGRYDLLLKPKNIFERKEGIIIELKAINIDNLKLDLEKIHEKLLNECEVALNQIEKKEYTSILKNAGIDNILKIGIAFFGKEFEVKFERE
>NZ_AP019841.1|WP_147004582.1|1502263_1502857_-|phosphoribosylglycinamide-formyltransferase
MSNKNKKRIAVLVSGGGSNLQSIIDNIEQGNLNCEISYVIADRECYGLERAEKHGIKNVLLDRKVLKEKLSDEISSVLENDDEKTDYIVLAGYLSILSPEFIKKWSRKIINIHPSLLPKFGGKGMYGMNVHRAVIEEKETESGCTIHFVDTGVDTGEIILQMKVPVLSDDTPEILQKRVLEKEHVLLIEGIKKLLGK
>NZ_AP019841.1|WP_147003905.1|1502897_1503896_-|phosphoribosylformylglycinamidine-cyclo-ligase
MSISYKDSGVDKEEGYRSVEKIKERVKATYNKNVMNELGSFGALYKLGEYKKPILVSGTDGVGTKLKVAFETNKYDTVGIDCVAMCVNDILCHGAQPLFFLDYLACGKLDSNVSSEIIKGVVEGCLQGDSALVGGETAEMPGFYADGEYDIAGFAVGVVEEEKMVNGSKVQEGDVIVAIPSSGAHSNGFSLLRKLFTDFNEEFNGKTIGEHLLTPTKIYVKPIQKVMEKVQVNGMAHITGGGLIENVPRTIPDGLCANIEKAKVKVHPLFKHETFSRVPEEEMWGTFNMGVGFVVIVNKNDAQTVIDILAENGEEAYELGTIVKGDEKINLY
>NZ_AP019841.1|WP_147003907.1|1503932_1504220_-|GTP-cyclohydrolase
MYIVSLNYVKAVSEVEKYLEEHIKFLEKYYEMGKFICSGRKNPRTGGVILLNAENLEEVKKIISEDPFNINGIAEYEITEFFPTKYAEDFANFVK
>NZ_AP019841.1|WP_147003909.1|1504229_1505681_-|amidophosphoribosyltransferase
MIKSLNEECGVFGVFGHHEAARLTYYGLHSLQHRGQEAAGIVVSDGKRVNGHRGPGLVSEVFNDDRIFNRLQGNCAIGHVRYATSGSSSGRNIQPFLFQFFDGSIALAHNGNLINAKKLKRELEKHGAIFHSTSDTEVLVHLIRRSKEKDFLSQLKDALRQVKGGFSFLVQTQTELYGAVDPFEFRPLILGKTKNGAYILASETCALEIVGAEFVRNIRSGEVVIIDKDGYRIEKYTDDTSTAIAAMEYVYFARPDSDISGINVHSARKRCGRRLAQEAPVENADIIIGVPNSSLSAASGYAEESGKPYEMGLIKNQYVARTFIQPTQELREQGVRMKLSAVKGVVKDKVVVMIDDSIVRGTTSSRIVQLLKEAGAKEVHVRIASPEFKFPIFYGIDVSNSSELISANKTVEEVRDYIGADSLAFLSIDGLIDSIGLNFDAPYTGLCMECFNGDYPAGLGDYEEEFYASLTPIQKEALKELEK
>NZ_AP019841.1|WP_147003911.1|1505809_1506526_-|phosphoribosylaminoimidazolesuccinocarboxamide-synthase
MEKREQIYEGKAKSIFATDNADEIIMYFKDDATAFNGVKKDQLEDKGILNNKISTLLYGYLIKHGVKTHWIKTLNEREQLCKKVEIVPLEVIIRNRATGSFVKRYAAEEGKIFKRPTFELSYKNDDLGDPLLNDDHALALELLTEEELAEIKKQTFLINDLLSALFDKMNLILVDYKIEFGRDKDGNILLADEISPDSMRLWDKDTLKKLDKDRFRQDLGDVMGAYREVLRRMEEVLK
>NZ_AP019841.1|WP_147003913.1|1506695_1507175_-|5-(carboxyamino)imidazole-ribonucleotide-mutase
MKVAIFFGSQSDTDKMRGAANCLREFGIEFEAYVLSAHRVPEKLEEVLADVEKRGAEVIIAGAGLAAHLPGVIASKTILPVVGVPLNGALEGLDALYSIVQMPKSIPVATVGINNSYNSGMLAVQILAIKYPEIREKLVTFRKEMKAKFIADNEKKVEL
>NZ_AP019841.1|WP_147003915.1|1507195_1511002_-|phosphoribosylformylglycinamidine-synthase
MNYRIFVEKKKDFRVEAQNLFSDLKENVGISELSDVRVLNIYDVFNLGENDLEKLERTVFSEINADNVFRSLDEVFEEKNSENVYFSVEFLPGQYDQRADSAIQCVNLLIDKNNNINVKSGKLIILYGKISPEELAKVKKYYINEVEAREKDLNVLSENVETENKDDVIVYDGFTEKTKEEIADLKDKLELAMTVNDLLFIQEYFKNEEKRNPTETEIRVLDTYWSDHCRHTTFETIIDDIKIENETYKNIIEKAISEYLESRKYVHADRISKKPMTLMDLATIFGKEQRKNGNLPDLEVSDEINACSIYIDVPIERIGEDGEKSITTEKWILQFKNETHNHPTEIEPFGGASTCIGGAIRDPLSGRTYVYQAVRISGSADPTEKIADTMAGKLPQKVITQVAAHGFSSYGNQIGLATTHVNEIYDEGYKAKRMELGLVVGAAPAENIIREKPENGDVVILLGGRTGRDGIGGATGSSKEHTTESSEKSSAEVQKGNAIVERKIQRLFRNRNVTKLIKKCNDFGAGGVSVAIGELADGLEIDLNKVRVKYIGLNGTELAISESQERMAVVIEKQNLDKFIEFANEENLEAYQVAEINDSNRLVMKYNGKAIVDISRDFLNTNGAASNINITIENTPKLNLNREIEGNDFRSKFVNNLKDLNVASQRGLVETFDSTIGATTVLMPFGGKYQLTPAEVSVQKVSVINAETDVASMVGYGYNPYVAKQSTFHGGAYAVIESMAKVVAGGGNYKNIRFTFQEYFERLGQDSKKWGRPLSALLGALHIQKAFGLPSIGGKDSMSGTFNDISVPPTLVSFAVSVTDAENVISSEFKKAGNNVYLITTPNDEDDLPKLDELKANFDFVTENIRNRKIVSAMAVKNGGIAESIAKMAFGNKLGVDVAADLSENEWFKVNYGAFIVETAGNIENKNAVLLGKVTDNAKISVNSITFDLDELIGTWESKLERIFPTKKEVEEEHKIAHCKGVKYEKIEKIETQNIISNISNTYAKPRVFIPVFPGTNSEYDLERAFNREGGLAKIGVFNNLSHSNILSSIDNFVKEINNSQILMLPGGFSAGDEPDGSAKFMVAVLKNKKVKEAVENLLKRDGLILGICNGFQALIKSGLLPYGEIRELNEDSPTLTFNTIDKHMSKIVQTKIITNNSPWLANMKEGDIHSVAISHGEGRIVITEEEYKKLFKNNQIATKYVDLDGNSTMDSQFNPNGSYYAIEGMLAYNGRIFGKMGHSERKGKNVYKNIYGDKEQNIFRNGIKFFK
>NZ_AP019841.1|WP_147003917.1|1511495_1511822_+|ribosome-associated-translation-inhibitor-RaiA
MKIIISGKQLKVTDAIKTYTEEKISRISKYSDAITEIDVVLTVEDTKSEGPVHKADGLVFASGTKIKIEAENKDLYAAIDDLSDRLERQVRKYKEKQKDHNKKGTRQS
>NZ_AP019841.1|WP_147003919.1|1511924_1513286_-|sodium/proline-symporter-PutP
MAIGVYFYVKTDTHEEYILGGRGVGYWVTAMSAQASDMSGWLLLGLPGAVYLSGLKQVWVIIGLIIGTYINWKIVAPRLRMQTEEHEALTIPTFISKKSNDTKGYVKTFSAIVILFFFTIYSASGLVSNGKLFESLLGIDYKLGVLVGGGTIIFYTFLGGYLAGVWTDFFQGILMFFAIIIVPVTAYFVVGGSSAIDVAMTQKHISLNLLKYPEALSIPVIISGLGWGLGYFGQPHIIVKFMSIKSVNELWKARLIAMVWVIISLVCSIAIGITGIALFKNVQDPEKIFIYMIGKLFNPWIAGILYAAILSAIMSTISAQLLVASNTLTEDFYKYIVKREKTNKELIWVGRICIIIIFIIATLLSMNPNSEVLSLVSYAWAGFGAVFSPVILFILYKKEMNWKNILISMVVATITVIFWNQSGLGKKIYEIVPGFLVNMFCLYILEKFIKSKK
>NZ_AP019841.1|WP_147003921.1|1514823_1515309_-|GNAT-family-N-acetyltransferase
MKIRKATINDLEELTRIEAECFPAAEAATEESFRGRLEIYPDFFWILENEDGKIISFVNGMATNDEILTDEMFENPNLHDENGDWQMIFGVNTLPEFRRRGYAEKVLRKVVEDAKSAGRKGVVLTCKDRLVPFYGKIGFVNEGLSESTHGGAVWYNMRIIF

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Crispr_ID: NZ_AP019841_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_AP019841_5

2143362-2143476

Orphan

Consensus_repeat	Method
GTATATGTAAAAAAAGAACCTACACGTA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_AP019841_5

>merge|NZ_AP019841|5|2143362-2143476|CRISPRCasFinder
GTATATGTAAAAAAAGAACCTACACGTAAAATCGTAAGAAGAAGATACATTTTCGTGAAAGTTCCTAAAAAGAAAAATTCAAAAGTAGTATATGTGAAAAAAGAACCTACACGTA

>NZ_AP019841|5|5|2143362-2143476|CRISPRCasFinder
GTATATGTAAAAAAAGAACCTACACGTA	AAATCGTAAGAAGAAGATACATTTTCGTGAAAGTTCCTAAAAAGAAAAATTCAAAAGTA
GTATATGTGAAAAAAGAACCTACACGTA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_AP019841.1\|WP_147004399.1\|2135793_2137461_-\|5'-nucleotidase-C-terminal-domain-containing-protein	unknown	unknown	gnl\|CDD\|223808
NZ_AP019841.1\|WP_147004401.1\|2137908_2138763_-\|carboxylating-nicotinate-nucleotide-diphosphorylase	unknown	unknown	gnl\|CDD\|235831
NZ_AP019841.1\|WP_147004409.1\|2147083_2147965_-\|hypothetical-protein	unknown	unknown	unknown
NZ_AP019841.1\|WP_147004412.1\|2152509_2153394_+\|peptidyl-prolyl-cis-trans-isomerase	unknown	unknown	gnl\|CDD\|379040
NZ_AP019841.1\|WP_147004404.1\|2141251_2143042_-\|NAD-nucleotidase	unknown	unknown	gnl\|CDD\|211667
NZ_AP019841.1\|WP_147004402.1\|2138740_2140042_-\|L-aspartate-oxidase	unknown	unknown	gnl\|CDD\|180442
NZ_AP019841.1\|WP_147004410.1\|2148078_2148843_-\|site-2-protease-family-protein	unknown	unknown	gnl\|CDD\|100079
NZ_AP019841.1\|WP_147004413.1\|2153556_2155110_+\|hypothetical-protein	unknown	unknown	unknown
NZ_AP019841.1\|WP_010126479.1\|2145333_2145711_+\|DUF1304-family-protein	unknown	unknown	gnl\|CDD\|377753
NZ_AP019841.1\|WP_147004407.1\|2144529_2145303_+\|type-I-methionyl-aminopeptidase	unknown	unknown	gnl\|CDD\|235576
NZ_AP019841.1\|WP_015770275.1\|2149920_2150232_-\|hypothetical-protein	unknown	unknown	unknown
NZ_AP019841.1\|WP_147004395.1\|2129971_2132248_-\|ribonuclease-R	unknown	unknown	gnl\|CDD\|273947
NZ_AP019841.1\|WP_147004398.1\|2134196_2135378_-\|tRNA-guanosine(34)-transglycosylase-Tgt	unknown	unknown	gnl\|CDD\|234642
NZ_AP019841.1\|WP_147004408.1\|2145825_2146995_-\|hypothetical-protein	unknown	unknown	unknown
NZ_AP019841.1\|WP_147004411.1\|2150281_2152111_-\|glutamine--fructose-6-phosphate-transaminase-(isomerizing)	unknown	unknown	gnl\|CDD\|234729
NZ_AP019841.1\|WP_147004400.1\|2137466_2137886_-\|nucleotide-pyrophosphohydrolase	unknown	unknown	gnl\|CDD\|212143
NZ_AP019841.1\|WP_147004397.1\|2133091_2133757_+\|cyclic-nucleotide-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|223736
NZ_AP019841.1\|WP_147004403.1\|2140043_2140940_-\|quinolinate-synthase-NadA	unknown	unknown	gnl\|CDD\|376787
NZ_AP019841.1\|WP_147004406.1\|2143821_2144451_+\|adenylate-kinase	unknown	unknown	gnl\|CDD\|234711
NZ_AP019841.1\|WP_147004396.1\|2132270_2132846_-\|HD-domain-containing-protein	unknown	unknown	gnl\|CDD\|224627

Protein	Function_ID	Function_description	E-value
NZ_AP019841.1\|WP_147004399.1\|2135793_2137461_-\|5'-nucleotidase-C-terminal-domain-containing-protein	gnl\|CDD\|223808	COG0737, UshA, 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases [Nucleotide transport and metabolism].	4.08599e-91
NZ_AP019841.1\|WP_147004401.1\|2137908_2138763_-\|carboxylating-nicotinate-nucleotide-diphosphorylase	gnl\|CDD\|235831	PRK06559, PRK06559, carboxylating nicotinate-nucleotide diphosphorylase.	8.29574e-156
NZ_AP019841.1\|WP_147004412.1\|2152509_2153394_+\|peptidyl-prolyl-cis-trans-isomerase	gnl\|CDD\|379040	pfam13145, Rotamase_2, PPIC-type PPIASE domain.	7.36352e-12
NZ_AP019841.1\|WP_147004404.1\|2141251_2143042_-\|NAD-nucleotidase	gnl\|CDD\|211667	TIGR01530, Probable_5'-nucleotidase, NAD pyrophosphatase/5'-nucleotidase NadN. This model describes NadN of Haemophilus influenzae and a small number of close homologs in pathogenic, Gram-negative bacteria. NadN is a periplasmic enzyme that cleaves NAD (nicotinamide adenine dinucleotide) to NMN (nicotinamide mononucleotide) and AMP. The NMN must be converted by a 5'-nucleotidase to nicotinamide riboside for import. NadN belongs a large family of 5'-nucleotidases and has NMN 5'-nucleotidase activity for NMN, AMP, etc. [Transport and binding proteins, Other, Biosynthesis of cofactors, prosthetic groups, and carriers, Pyridine nucleotides].	0
NZ_AP019841.1\|WP_147004402.1\|2138740_2140042_-\|L-aspartate-oxidase	gnl\|CDD\|180442	PRK06175, PRK06175, L-aspartate oxidase; Provisional.	0
NZ_AP019841.1\|WP_147004410.1\|2148078_2148843_-\|site-2-protease-family-protein	gnl\|CDD\|100079	cd06158, S2P-M50_like_1, Uncharacterized homologs of Site-2 protease (S2P), zinc metalloproteases (MEROPS family M50) which cleave transmembrane domains of substrate proteins, regulating intramembrane proteolysis (RIP) of diverse signal transduction mechanisms. Members of the S2P/M50 family of RIP proteases use proteolytic activity within the membrane to transfer information across membranes to integrate gene expression with physiologic stresses occurring in another cellular compartment. In eukaryotic cells they regulate such processes as sterol and lipid metabolism, and endoplasmic reticulum stress responses. In prokaryotes they regulate such processes as sporulation, cell division, stress response, and cell differentiation. This group includes bacterial, eukaryotic, and Archaeal S2P/M50s homologs with a minimal core protein and no PDZ domains.	1.03444e-54
NZ_AP019841.1\|WP_010126479.1\|2145333_2145711_+\|DUF1304-family-protein	gnl\|CDD\|377753	pfam06993, DUF1304, Protein of unknown function (DUF1304). This family consists of several hypothetical bacterial proteins of around 120 residues in length. The function of this family is unknown.	2.74949e-36
NZ_AP019841.1\|WP_147004407.1\|2144529_2145303_+\|type-I-methionyl-aminopeptidase	gnl\|CDD\|235576	PRK05716, PRK05716, methionine aminopeptidase; Validated.	9.40121e-129
NZ_AP019841.1\|WP_147004395.1\|2129971_2132248_-\|ribonuclease-R	gnl\|CDD\|273947	TIGR02063, Ribonuclease_R, ribonuclease R. This family consists of an exoribonuclease, ribonuclease R, also called VacB. It is one of the eight exoribonucleases reported in E. coli and is broadly distributed throughout the bacteria. In E. coli, double mutants of this protein and polynucleotide phosphorylase are not viable. Scoring between trusted and noise cutoffs to the model are shorter, divergent forms from the Chlamydiae, and divergent forms from the Campylobacterales (including Helicobacter pylori) and Leptospira interrogans. [Transcription, Degradation of RNA].	0
NZ_AP019841.1\|WP_147004398.1\|2134196_2135378_-\|tRNA-guanosine(34)-transglycosylase-Tgt	gnl\|CDD\|234642	PRK00112, tgt, queuine tRNA-ribosyltransferase; Provisional.	0
NZ_AP019841.1\|WP_147004411.1\|2150281_2152111_-\|glutamine--fructose-6-phosphate-transaminase-(isomerizing)	gnl\|CDD\|234729	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase.	0
NZ_AP019841.1\|WP_147004400.1\|2137466_2137886_-\|nucleotide-pyrophosphohydrolase	gnl\|CDD\|212143	cd11536, NTP-PPase_iMazG, Nucleoside Triphosphate Pyrophosphohydrolase (EC 3.6.1.8) MazG-like domain found in integron-associated MazG (iMazG) proteins. This family corresponds to the iMazG proteins representing a new subfamily of MazG NTP-PPases. iMazG is likely to act as a house-cleaning enzyme capable of removing aberrant dNTPs, preventing the incorporation of damaging non-canonical nucleotides into host-cell DNA. It can convert dNTP to dNMP and pyrophosphate by cleaving between the alpha- and beta-phosphates of its dNTP substrates, with a marked preference for dCTP and dATP. Unlike typical tandem-domain MazG proteins, iMazG contains a single MazG-like domain and functions as a tetramer (a dimer of dimers) with a typical four-helical bundle. The divalent ions, such as Mg2+, are required for its pyrophosphatase activity.	2.51111e-31
NZ_AP019841.1\|WP_147004397.1\|2133091_2133757_+\|cyclic-nucleotide-binding-domain-containing-protein	gnl\|CDD\|223736	COG0664, Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms].	1.15831e-19
NZ_AP019841.1\|WP_147004403.1\|2140043_2140940_-\|quinolinate-synthase-NadA	gnl\|CDD\|376787	pfam02445, NadA, Quinolinate synthetase A protein. Quinolinate synthetase catalyzes the second step of the de novo biosynthetic pathway of pyridine nucleotide formation. In particular, quinolinate synthetase is involved in the condensation of dihydroxyacetone phosphate and iminoaspartate to form quinolinic acid. This synthesis requires two enzymes, a FAD-containing "B protein" and an "A protein".	1.16454e-157
NZ_AP019841.1\|WP_147004406.1\|2143821_2144451_+\|adenylate-kinase	gnl\|CDD\|234711	PRK00279, adk, adenylate kinase; Reviewed.	4.85021e-120
NZ_AP019841.1\|WP_147004396.1\|2132270_2132846_-\|HD-domain-containing-protein	gnl\|CDD\|224627	COG1713, COG1713, Predicted HD superfamily hydrolase involved in NAD metabolism [Coenzyme metabolism].	3.87312e-54

>NZ_AP019841.1|WP_147004404.1|2141251_2143042_-|NAD-nucleotidase
MKKLLLLGLVLALLPAANLEAKTIKKAAGKNSQSTFELNVAHINDHHSHLEEEKMPIKLDGKTVTVHIGGLPRVGQEIKNFRKNNKNTLVVHAGDAVTGTLYYTLFEGKADAELMNAINFDAYTLGNHEFDDGNKFLRSFLDALKIPVVSSNVVPDKGSILEGKWKPYIIKNIGGQNVGIIGIDVVKKTKESSSPGEDIKFLDEVETAKKYAKELQDKGINKIVLLSHAGYEKNVEIGQKVDGIDLIISGDTHYLLGKEFEQFGLVPEADSYPKKVNSPNGNPVYIAEAWNYSYLLGEMKAKFDKNGVITELTPAPKLLIGDDFFEVKDADGKAVQLDEKEKSKILNSIKNNKNIVAIKNDPALSKLLERYQKEKTELGKRTIGKITEEIPGGSDNRVPSEHNKDGSFATTLVAESVLHKLRNTGTGNVDFVIGNAGNVRITLNPGDFSYDLAYSLLPFTSNTVFITDVTGAEVKQILEDAIDYVLNGGSTGAFPYGAGIRYEATKEGTLGTRVKKIEVFDFKANKWIPIDAKKTYMLAVNSYIAKGKDGYTTLGKITAQKRGNDTHLSDTKMFIDYLKEKKELGKPKSTNVIFKY
>NZ_AP019841.1|WP_147004403.1|2140043_2140940_-|quinolinate-synthase-NadA
MKERIKKLQKEKDVAILAHYYVDGDVQEIADYVGDSFYLAKTATKLKNKTIIMAGVYFMGESIKILNPEKTVYMVDIYADCPMAHMITIKKIKEMREKYSDLSVVCYINSTAEIKAHCDVCITSSNALKIVSKLKEKNIFIVPDGNLASYIAKQVKNKNIILNEGYCCVHNLVHLENVKKLKEEYPNAKVLAHPECKEEILKLADYIGSTSGIIAEALKEGDEFIIVTERGIRFEIYKKAPDKKLHFADTLICRSMKKNTLEKIEKILTEGGDELKVDDEIAKKALIPLERMLELAGD
>NZ_AP019841.1|WP_147004402.1|2138740_2140042_-|L-aspartate-oxidase
MKAENYDVVIIGSGVAALICALTLDDSINICLITKKKLRDSNSYLAQGGISVCRGKEDREDYIEDTLIAGHYKNDRKAVEILVDESEEAVKTLIEMGVKFTGDKKGLFYTREGGHRKFRILYCEDRTGKYIMESLIKKVLEKKNIKTIENCEFLDIVEENNTCLGIVAKNKEIFSIRSKFTVLATGGIGGIYKNTTNFSHIRGDGIAAAIRHNIELKDISYVQIHPTTFYTKDNERKFLISESVRGEGAVLLNQKLQRFTDELKPRDEVTRAILEEMKKDKSEYEWLDFSTIKLDIEKRFPNIYKQLIKKDINVLKDKVPVVPAQHYTMGGIKVNMDSKTSMKNLYAVGEVACTGVHGQNRLASNSLLESVVFGKRAAHSINVENNVSNYNNVTVDNAFKNIEKEVFEIENKIKENKNIIEQRIKEDEFEKNR
>NZ_AP019841.1|WP_147004401.1|2137908_2138763_-|carboxylating-nicotinate-nucleotide-diphosphorylase
MSLRKIDKFQMDNSIKLALKEDITSEDVSTNAIYKDDRLAEISLYSKGEGILAGLDVFRRVFELNGSPVFTEYKKDGDEVFKKDLILKIRDDVKALLSSERVALNYLQRMSGIATYTKKMIEALDDKNIYLLDTRKTVPNMRIFEKYAVVAGGGYNHRYNLSDAIMLKDNHISAAGSITKAIKLAREYSPFIKKIEIEVEDLEGVEEAVRAGADIIMLDNMDIETIKKAIKVIGKKAIIECSGNIDINNINRFKGLEIDYVSSGAITHSAKILDLSLKNLRYIE
>NZ_AP019841.1|WP_147004400.1|2137466_2137886_-|nucleotide-pyrophosphohydrolase
MKRNAEDMTLKEVQYLIKRIEKGTLDESRDKENLQQKRENGQRLVLKLIEEFGELAENIRKNVRFDGENIKGTIEEEVFDVFYYVIAIANDYGIDLEKIFYIKDELNKVKYGREFSIYEAREKWKNMMENKKNKKEEGK
>NZ_AP019841.1|WP_147004399.1|2135793_2137461_-|5'-nucleotidase-C-terminal-domain-containing-protein
MSMKNIDACLGKKENKREVNIKILGTSDVHGRVLAWNYGADEEDRSGSYAQISTLVKKIRKENKNVILVEVGDAIQDNWIEKFAMVPKHPVPQILNYMGYDVFVPGNHEFNFGMPTLSNILRDMKFNKLAANLYYNENAENDTNFSKNKKRYLNASVIIERDGIKIGVIGLSTPMSAQFEEDTGYLKDFYFVSPINETRRQIEKLKSEGANAIVVVAHMGIENENNIPETGVRDLANAVSEIDVIVAGHMHQNVPKEIINGVLITEPHRYGTFVSEVDLKFEIENGKISLISKDSTTVPVKDEEPDPEIEKIYKPFHNRLCKIANEKVGETLNDMVPKGKFHGVSAAFAKDTGLSSFITDVELYYSGADVVSFAYNYENVRLNKGEIRRKDIVYNYRYAGGDVTIYKMTGKQLKDYMEWAADYFDTIQPGDTEYRYNDERAGRKYVTFDIFGGVKYKIDLRNEKGKKITNLMLVNGKKITSEMELKVGMNAYRFEQLARKGGIFDGQEIPVLWASKEAIGEIDGTIQNMMIDYIKNVKNGIIEGKSHNNWEIIGL
>NZ_AP019841.1|WP_147004398.1|2134196_2135378_-|tRNA-guanosine(34)-transglycosylase-Tgt
MSIEKENQDFNNPIKYKLEKSDGNARAGVITTPHGEIKTPVFMPVGTQATVKAMTKEELEEINSQIILGNTYHLYLRPGDELVNDFGGLHGFMRWDRPILTDSGGFQVFSLGDLRKIKEEGVYFCSHLDGSKHFLSPEKSISIQNNLGSDIMMVLDECPPGLSTREYLIPSIERTSRWAKRCIEANRNKDRQGLFAIVQGGIYEDLRDKSLEELYEADYGFAGYALGGLAVGEPREDMYRILKYITPKLPENKPRYLMGVGEPADMLEAVEHGIDMMDCVQPTRIGRHGTVFTKYGRLVIKNAVYSRDDRPLDEDCDCYACRNYTRAYIRHLFKAGEILGQRLATYHNLHFLLKLMDNAREAIIDGRFKEYKEEVLKNYAMGKESDWIKPKSI
>NZ_AP019841.1|WP_147004397.1|2133091_2133757_+|cyclic-nucleotide-binding-domain-containing-protein
MKIEDLSLFLTKVSLFKGLNPDKIAKYLTEVDFKIKEYKKNEIVFFRGDILKKIIIIVKGTARGEMQKFNGDTIVINQMKAGEVLASAFLFGKNNVFPVDLIALENSEFLFLDKEKYLDLIQSDKRLLLNFIREISNKSQYLSKRIWFNFTHKTIEEKILSYIKENAQDDKIKFLPSISALAKKFEVTRPALSREISSLCKRKILKKIENNVYLINFSNFF
>NZ_AP019841.1|WP_147004396.1|2132270_2132846_-|HD-domain-containing-protein
MNMEVIKANVRNFLDEKRYEHVKRVAKCAVELARIYGVPVEKVEASAWLHDVAKFFNLSVMIDLTRGKYPEVADKMSQSTAVLHGFAGAEFVRQNYDLFGVDDEEILDGIKYHTIGCENMSTLAKIIYLADAIEEKRSWEGVEKARELAKTDLDEAIKFEIEEKLKYLLAKDSIIHPNVIKFRNSIIANKI
>NZ_AP019841.1|WP_147004395.1|2129971_2132248_-|ribonuclease-R
MGNKKKKERHRNIENSDKDFHKEKRFGKKNYNPKKENQKTPKMELKEERELKYLKQVLSEYEFTFQEILQLLEWSQKKRKMYKQLLNAWEESGEIYLKRNGKYTLPEKEGFVKGEISISSGNFGFLDINGQASVFIPGTYLNTAMNGDTVLVRILKESSDNKKREGEVYKVIKRNRDVIVGIFEHNLSFGFVRPRNSPKDIYIPKKLIRGAKTGDLVAVKVDFWGDEERKPEGGIVSILGSPKDTEALISSLLLNEGIEEKFPNEVLQELDKIDEDFSDELENRKDLRHLDIITIDGSDAKDLDDAVYVEKTEDGYKLFVSIADVSCYVKENTELDTEALKRGNSIYLVDRVIPMLPRKLSNNLCSLNPNEDKLTFTVEMDLDKRGKVIKNDFYKSVIKSKYRMTYENVNIILEKNEESEEYRNLYDKYRKIDEMLKNMLELSKIIRSNKKRRGSIDFELPEIKVVLDENKAVKDIVLRSRGEAERIIEDFMVIANETVAEKLFWEEIPAIYRVHEDPDKAKVQALNETLIKFGYSLKGLEEIHPGKFQNIIERTTGLPEGYLIHKLILRAMQRARYANKNLGHFGLASKYYLHFTSPIRRYSDLIVHRMLGRSIEKFMSEKEKAKYGANFEAIASSISRTERVADKLEEDSVKIKLIEYMQDKIGQVYVARLSGMNKNKIFMELENHVEVVYNVTTARDNFIYDEENFKIVDKRNNESYTMGSTMKVSIVSASYAKMEIEVIPYVEEKVKIEEMEEE
>NZ_AP019841.1|WP_147004406.1|2143821_2144451_+|adenylate-kinase
MNIVLFGAPGAGKGTQAKELIKKYEIPQISTGDILRAAIANKTPLGLEAKKLMDEGKLVSDNIVNGLVEARLKEDDCKKGFILDGFPRTVAQAEELDKILAKSNREIEKVIALEVSDEEIIERITGRRVSKKTGKIYHIKYNPPVDENPEDLEQRADDNEETVKKRLAVYNEQTAPVLDFYKKQNKVYSVDGAKKLEEITKDIIDILEK
>NZ_AP019841.1|WP_147004407.1|2144529_2145303_+|type-I-methionyl-aminopeptidase
MIIYKTLDEIKKIKKANEIIARLFEDVLPKYVKAGISTYELDQIAEDYIRSQGAIPGTKGYDIGSPYPPYPAATCISVNEVVVHGIPSKKQILKEGDILTIDTVTVLDGYFGDSAITYAVGEIDETSKKLMEVTEKARAIGIEAAHAGNRIGDIGHAIQEYVESFGFSLVRDFAGHGVGKEMHEDPIIPNYGRAGTGAKIENGMVITVEPMVNVGTYKVKILPDMWTAVTKDGKRSAQYEHSFAIIDGKPVILSVRD
>NZ_AP019841.1|WP_010126479.1|2145333_2145711_+|DUF1304-family-protein
MSILAFILILFVAMEHYYILILEMYLNESKSIQKNFGLELDFLKDERVKKMLANQGLYNGFLASGLMWSLTESGEFQFQIAIFFLICIICAAIYGSVTVSKKIFLLQGIPALMAFILLLLPLIIS
>NZ_AP019841.1|WP_147004408.1|2145825_2146995_-|hypothetical-protein
MKKLFILLSLPLFFSLNSKSLAYTRAELIQDRLSKIGIKQDIIDETIKFQYDIKDEKNFFTEEGKESDDFQKLKEIYEKDERNETLGATIAGAYMVGEQKDFKKARQYMDKISKYLSKFDRLSNELSYYKLKGDEKNSKKYYNLLKRSYKGTPVMDLVEILNDNLEMISFLNTLGDYLNEEDNNINNEANDLPDGFLYDEKNGIIQNKDEDENDDSDEAENDEEDNQTYSESIKEILDDGKETLKSQKEEADKYRRIADYFKIDKNQKEFGIPDDYVRGFELKFAEIEISKNMLNYGVGSAVKYYLDNVSTKDVSYEDVYFNEQSELALYLSIAQMLAAADESVINKYRKEFENTRVIKLLDEVLENERKKEKDKIENPDKNSKKHIKG
>NZ_AP019841.1|WP_147004409.1|2147083_2147965_-|hypothetical-protein
MRKLFLILGIFLMMNFEIYGFTQKEKIQETLSKLGVRQELIDETLALDYEIRDTQYFEEDEKIIRERVAKLEKLLQKDKRNYIAAQALITIFESKISGDYKKYLDLFEKYTPYEYTKTFSKMMYALEQGNMPEFEKYMDEIPKKYSDPAIIALSKIFVAKDFNEKQMLTEKVLKLLKDEGERRKIGVSDEEYHMMKLTYYLNKIRGLFDSGELKQAVAEYLDNVVNEDVSDEIRNYNLRAEVILYFNVVIMNEGIQEVMLKISNGAKLEDTWIARKIQEETEKDKDFLAKMVN
>NZ_AP019841.1|WP_147004410.1|2148078_2148843_-|site-2-protease-family-protein
MKKLKDYYDRFKNLNPQYSGIKLGIIVAVVVYFIARIFFVVEISRDMIISLAVFVISMTFHEVAHGYVAYKFGDNTAKMNGRITLNPLRHIDLTGILLPILILLSGFKFLVGWAKPVPVNFDNLRPHRLGLFCVAIAGIVVNFIIAAVSLLLLKYLGKHLDIENIFMTILLYTYLINLLLGMFNLIPITPLDGGRIIYSFSGEKVRKFYNKIEKYGILIIFAIVYFGSRTLMNGFIAIVEFFLKLAGIQLNLMF
>NZ_AP019841.1|WP_015770275.1|2149920_2150232_-|hypothetical-protein
MKFDDLKKGAEDALKKTVDGAKDLADKAADKTKEIAGSEVAQNIKKGTEEVFEKTVEGAKDLANKAANNKIVKDVEKGAEKAVDKTVEGAKDLAGKVTGMFKK
>NZ_AP019841.1|WP_147004411.1|2150281_2152111_-|glutamine--fructose-6-phosphate-transaminase-(isomerizing)
MCGIVGYIGAKNAQDFVIDGLEKLEYRGYDSAGIAVNTGSEKFEIVKKVGRLKNLADELEKHPLKGTVAIGHTRWATHGKPSDENSHPHFNKDKTLVVVHNGIIENYLELKRDLIAKGYEFKSETDTEVVAHLLDELYTGDILETVKKLLKVIKGAYALGIMSVKEPDRIIAARKESPLIVGIGKGENFIASDIPAILKYTRDVYLIENNEIVEIKKDSVKIMDIDGNEIKRDITHIEWDLEAASKGGYEYFMEKEIFEQPEVLVKTLNSRVDENYNINFDDAGLTKEYLSGINDIYIVACGTAYHAGLAGKHIIEKKTRIRVDVDIASEFRYRNPVIDDKALVIVLSQSGETLDTLEAMKEAKRHGARVVAITNVVGSSVAREADHVIYTWAGPEIAVASTKAYTTQMVILNLMAIDFAYKFGKITKDEAAEDIKKLYEVEQSIQRMLEYDEKIKDVADKIKDSESMFYLGRGLDYVIAVEGALKSKEISYIHSEAFASGELKHGTIALITDGVPVVVNATQSDLFEKSVSNIKEVTSRGAYVIAIAKEGNTVVEEVADEVFYIPNVEDDYAGFPTIVIHQLLAYYLSKLKGNDVDKPRNLAKSVTVE
>NZ_AP019841.1|WP_147004412.1|2152509_2153394_+|peptidyl-prolyl-cis-trans-isomerase
MNNKLKMGILTALCLFALSCGNGNGQSGKVLFESSDKKIKVYENEVNIELEKNLFSSGISQKDLTPDQIKQMKQSIIKNIALNRALAIKGKEEKLDKDKKYTENQDVIKEQLLASLTLVNEVNGKVNVTDEEAKKYYDANPAAFTLQEDTAKLQIIAFKATDSATASQVLKDVLANPNNFTTYARKYNANIPGVPENGETSEIPESRLGALGTAIKNVAAGQIVNSVVKVDNALYIVRVLEKNSKGVIPFEKVKETIKTQMRNQKRQIEQQNYLKSVSDEFKLSNMDDAIKNIK
>NZ_AP019841.1|WP_147004413.1|2153556_2155110_+|hypothetical-protein
MKILKYLLSAVLLVLVIFLFGIMFSSNIVSFMARSKHSEFENVKYSVKNSQMVFDNFAVNGKNLGKGRATVGIVRTGLFKLVPKLTISNLKLEDVNLESIYKEKNSQIDTFTEKIDSLSAQEKSDKTTADFIKETTDKVASLTTNTDNLINSKWRENIEKTNILKKNYAELTDLKSKAQKIVELNNEIKPLVKSINSEKENIEKNISEIELERDIALANVSDNLTKLEKEISLNDFNNNSSSSVQNMNLYIFLDKGKDLETSLNTALKATALVKEIKDLNIRISDVDINEGKIVAKGLNGNFSQVSGEILLQNNSKALIKGQNNGYEITYNKDNFTSKTLFAANKIGSLIEYSKNDLIAGKTVKLSSELVMENNNFKNLNHTVLTDEEKTLLTQKIENLRNNNYQQIMTKYEEDNKNIETLIDTVYAQKDKLDKLQRDLLSLGTIIAVEQPAVTNNENTPQSNNQNNSSAINILNNNASSSNTNNSNNDNNNTNSSSNNAEKQNNNQNTNKINIGNR

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Crispr_ID: NZ_AP019841_6

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_AP019841_6

2149053-2149612

Orphan

I-B

Consensus_repeat	Method
GTTTCAATCCTTATTTTAATGGATACTCTATTTTAAC	CRISPRCasFinder
GTTTCAATCCTTNTTTTAATGGATACTCTA	CRT
AGTTAAAATAGAGTATCCATTAAAATAAGGATTGAAAC	PILER-CR

7 spacers

The CRISPR arrays of NZ_AP019841_6

>merge|NZ_AP019841|6|2149053-2149612|CRISPRCasFinder,CRT,PILER-CR
AATTTAACCCTTGTTTTGATGGATACTCTACTTTAACGAAATATAATATAGATATTTCGGCATTTATAATTGAGTTTCAATCCTTATTTTAATGGATACTCTACTTTAACATTTAGAAAAAAATAATCCTCCGATTCATCAAGATGGGGTTTCAATCCTTATTTTAATGGATACTCTATTTTAACTATTCAAACAGAAAATTAGAAAGCGAATTAAGAGAATTGTTTCAATCCTTATTTTAATGGATACTCTATTTTAACGGTTTTGAAATTTCTTTTTTCTTATTAGTAATGATTCGTTTTAATCCTTGTTTTAATGGATATTCTACTTTAACACTATTTCAAGAAAGTACAGAGAGATGCTAAAAGATGTTTCAATCCTTGTTTTAATGGATACTCTATTTTAACTTACGGTCTTCGATAGAATAATGGAGTTTGAGAATTAGTTTCAATCCTTATTTTAATGGATACTCTATTTTAACCGTCATTCTTTGTTCTTCACAATATCTCATATAACTTACAGGTTTCAATCCTTATTTTAATGGATACTCTATTTTAACT

>NZ_AP019841|6|6|2149053-2149611|CRISPRCasFinder
AATTTAACCCTTGTTTTGATGGATACTCTACTTTAAC	GAAATATAATATAGATATTTCGGCATTTATAATTGA
GTTTCAATCCTTATTTTAATGGATACTCTACTTTAAC	ATTTAGAAAAAAATAATCCTCCGATTCATCAAGATGGG
GTTTCAATCCTTATTTTAATGGATACTCTATTTTAAC	TATTCAAACAGAAAATTAGAAAGCGAATTAAGAGAATT
GTTTCAATCCTTATTTTAATGGATACTCTATTTTAAC	GGTTTTGAAATTTCTTTTTTCTTATTAGTAATGATTC
GTTTTAATCCTTGTTTTAATGGATATTCTACTTTAAC	ACTATTTCAAGAAAGTACAGAGAGATGCTAAAAGAT
GTTTCAATCCTTGTTTTAATGGATACTCTATTTTAAC	TTACGGTCTTCGATAGAATAATGGAGTTTGAGAATTA
GTTTCAATCCTTATTTTAATGGATACTCTATTTTAAC	CGTCATTCTTTGTTCTTCACAATATCTCATATAACTTACAG
GTTTCAATCCTTATTTTAATGGATACTCTATTTTAAC

>NZ_AP019841|6|2|2149053-2149604|CRT
AATTTAACCCTTGTTTTGATGGATACTCTA	CTTTAACGAAATATAATATAGATATTTCGGCATTTATAATTGA
GTTTCAATCCTTATTTTAATGGATACTCTA	CTTTAACATTTAGAAAAAAATAATCCTCCGATTCATCAAGATGGG
GTTTCAATCCTTATTTTAATGGATACTCTA	TTTTAACTATTCAAACAGAAAATTAGAAAGCGAATTAAGAGAATT
GTTTCAATCCTTATTTTAATGGATACTCTA	TTTTAACGGTTTTGAAATTTCTTTTTTCTTATTAGTAATGATTC
GTTTTAATCCTTGTTTTAATGGATATTCTA	CTTTAACACTATTTCAAGAAAGTACAGAGAGATGCTAAAAGAT
GTTTCAATCCTTGTTTTAATGGATACTCTA	TTTTAACTTACGGTCTTCGATAGAATAATGGAGTTTGAGAATTA
GTTTCAATCCTTATTTTAATGGATACTCTA	TTTTAACCGTCATTCTTTGTTCTTCACAATATCTCATATAACTTACAG
GTTTCAATCCTTATTTTAATGGATACTCTA

>NZ_AP019841|6|3|2149423-2149612|PILER-CR
GTTTCAATCCTTGTTTTAATGGATACTCTATTTTAACT	TACGGTCTTCGATAGAATAATGGAGTTTGAGAATTA
GTTTCAATCCTTATTTTAATGGATACTCTATTTTAACC	GTCATTCTTTGTTCTTCACAATATCTCATATAACTTACAG
GTTTCAATCCTTATTTTAATGGATACTCTATTTTAACT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_AP019841.1\|WP_147004416.1\|2157736_2159044_-\|preprotein-translocase-subunit-SecY	unknown	unknown	gnl\|CDD\|236412
NZ_AP019841.1\|WP_147004412.1\|2152509_2153394_+\|peptidyl-prolyl-cis-trans-isomerase	unknown	unknown	gnl\|CDD\|379040
NZ_AP019841.1\|WP_006806072.1\|2159711_2159891_-\|50S-ribosomal-protein-L30	unknown	unknown	gnl\|CDD\|180163
NZ_AP019841.1\|WP_147004404.1\|2141251_2143042_-\|NAD-nucleotidase	unknown	unknown	gnl\|CDD\|211667
NZ_AP019841.1\|WP_147004402.1\|2138740_2140042_-\|L-aspartate-oxidase	unknown	unknown	gnl\|CDD\|180442
NZ_AP019841.1\|WP_147004415.1\|2156768_2157644_+\|ABC-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|273441
NZ_AP019841.1\|WP_147004410.1\|2148078_2148843_-\|site-2-protease-family-protein	unknown	unknown	gnl\|CDD\|100079
NZ_AP019841.1\|WP_147004413.1\|2153556_2155110_+\|hypothetical-protein	unknown	unknown	unknown
NZ_AP019841.1\|WP_010126479.1\|2145333_2145711_+\|DUF1304-family-protein	unknown	unknown	gnl\|CDD\|377753
NZ_AP019841.1\|WP_147004405.1\|2143262_2143520_+\|hypothetical-protein	unknown	unknown	unknown
NZ_AP019841.1\|WP_147004407.1\|2144529_2145303_+\|type-I-methionyl-aminopeptidase	unknown	unknown	gnl\|CDD\|235576
NZ_AP019841.1\|WP_010139318.1\|2155206_2155956_+\|phosphonate-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|213223
NZ_AP019841.1\|WP_015770275.1\|2149920_2150232_-\|hypothetical-protein	unknown	unknown	unknown
NZ_AP019841.1\|WP_147004408.1\|2145825_2146995_-\|hypothetical-protein	unknown	unknown	unknown
NZ_AP019841.1\|WP_147004411.1\|2150281_2152111_-\|glutamine--fructose-6-phosphate-transaminase-(isomerizing)	unknown	unknown	gnl\|CDD\|234729
NZ_AP019841.1\|WP_147004409.1\|2147083_2147965_-\|hypothetical-protein	unknown	unknown	unknown
NZ_AP019841.1\|WP_147004414.1\|2155968_2156763_+\|ABC-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|273441
NZ_AP019841.1\|WP_147004403.1\|2140043_2140940_-\|quinolinate-synthase-NadA	unknown	unknown	gnl\|CDD\|376787
NZ_AP019841.1\|WP_147004406.1\|2143821_2144451_+\|adenylate-kinase	unknown	unknown	gnl\|CDD\|234711
NZ_AP019841.1\|WP_147004417.1\|2159090_2159705_-\|50S-ribosomal-protein-L15	unknown	unknown	gnl\|CDD\|235523

Protein	Function_ID	Function_description	E-value
NZ_AP019841.1\|WP_147004412.1\|2152509_2153394_+\|peptidyl-prolyl-cis-trans-isomerase	gnl\|CDD\|379040	pfam13145, Rotamase_2, PPIC-type PPIASE domain.	7.36352e-12
NZ_AP019841.1\|WP_147004404.1\|2141251_2143042_-\|NAD-nucleotidase	gnl\|CDD\|211667	TIGR01530, Probable_5'-nucleotidase, NAD pyrophosphatase/5'-nucleotidase NadN. This model describes NadN of Haemophilus influenzae and a small number of close homologs in pathogenic, Gram-negative bacteria. NadN is a periplasmic enzyme that cleaves NAD (nicotinamide adenine dinucleotide) to NMN (nicotinamide mononucleotide) and AMP. The NMN must be converted by a 5'-nucleotidase to nicotinamide riboside for import. NadN belongs a large family of 5'-nucleotidases and has NMN 5'-nucleotidase activity for NMN, AMP, etc. [Transport and binding proteins, Other, Biosynthesis of cofactors, prosthetic groups, and carriers, Pyridine nucleotides].	0
NZ_AP019841.1\|WP_147004402.1\|2138740_2140042_-\|L-aspartate-oxidase	gnl\|CDD\|180442	PRK06175, PRK06175, L-aspartate oxidase; Provisional.	0
NZ_AP019841.1\|WP_147004415.1\|2156768_2157644_+\|ABC-transporter-permease-subunit	gnl\|CDD\|273441	TIGR01097, PhnE, phosphonate ABC transporter, permease protein PhnE. Phosphonates are a class of compound analogous to organic phosphates, but in which the C-O-P linkage is replaced by a direct, stable C-P bond. Some bacteria can utilize phosphonates as a source of phosphorus. This family consists of permease proteins of known or predicted phosphonate ABC transporters. Often this protein is found as a duplicated pair, occasionally as a fused pair. Certain "second" copies score in between the trusted and noise cutoff and should be considered true hits (by context). [Transport and binding proteins, Anions].	7.58547e-59
NZ_AP019841.1\|WP_147004410.1\|2148078_2148843_-\|site-2-protease-family-protein	gnl\|CDD\|100079	cd06158, S2P-M50_like_1, Uncharacterized homologs of Site-2 protease (S2P), zinc metalloproteases (MEROPS family M50) which cleave transmembrane domains of substrate proteins, regulating intramembrane proteolysis (RIP) of diverse signal transduction mechanisms. Members of the S2P/M50 family of RIP proteases use proteolytic activity within the membrane to transfer information across membranes to integrate gene expression with physiologic stresses occurring in another cellular compartment. In eukaryotic cells they regulate such processes as sterol and lipid metabolism, and endoplasmic reticulum stress responses. In prokaryotes they regulate such processes as sporulation, cell division, stress response, and cell differentiation. This group includes bacterial, eukaryotic, and Archaeal S2P/M50s homologs with a minimal core protein and no PDZ domains.	1.03444e-54
NZ_AP019841.1\|WP_010126479.1\|2145333_2145711_+\|DUF1304-family-protein	gnl\|CDD\|377753	pfam06993, DUF1304, Protein of unknown function (DUF1304). This family consists of several hypothetical bacterial proteins of around 120 residues in length. The function of this family is unknown.	2.74949e-36
NZ_AP019841.1\|WP_147004407.1\|2144529_2145303_+\|type-I-methionyl-aminopeptidase	gnl\|CDD\|235576	PRK05716, PRK05716, methionine aminopeptidase; Validated.	9.40121e-129
NZ_AP019841.1\|WP_010139318.1\|2155206_2155956_+\|phosphonate-ABC-transporter-ATP-binding-protein	gnl\|CDD\|213223	cd03256, ABC_PhnC_transporter, ATP-binding cassette domain of the binding protein-dependent phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only prokaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.	4.36802e-128
NZ_AP019841.1\|WP_006806072.1\|2159711_2159891_-\|50S-ribosomal-protein-L30	gnl\|CDD\|180163	PRK05611, rpmD, 50S ribosomal protein L30; Reviewed.	6.14348e-18
NZ_AP019841.1\|WP_147004411.1\|2150281_2152111_-\|glutamine--fructose-6-phosphate-transaminase-(isomerizing)	gnl\|CDD\|234729	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase.	0
NZ_AP019841.1\|WP_147004416.1\|2157736_2159044_-\|preprotein-translocase-subunit-SecY	gnl\|CDD\|236412	PRK09204, secY, preprotein translocase subunit SecY; Reviewed.	1.63014e-164
NZ_AP019841.1\|WP_147004414.1\|2155968_2156763_+\|ABC-transporter-permease-subunit	gnl\|CDD\|273441	TIGR01097, PhnE, phosphonate ABC transporter, permease protein PhnE. Phosphonates are a class of compound analogous to organic phosphates, but in which the C-O-P linkage is replaced by a direct, stable C-P bond. Some bacteria can utilize phosphonates as a source of phosphorus. This family consists of permease proteins of known or predicted phosphonate ABC transporters. Often this protein is found as a duplicated pair, occasionally as a fused pair. Certain "second" copies score in between the trusted and noise cutoff and should be considered true hits (by context). [Transport and binding proteins, Anions].	2.17688e-53
NZ_AP019841.1\|WP_147004403.1\|2140043_2140940_-\|quinolinate-synthase-NadA	gnl\|CDD\|376787	pfam02445, NadA, Quinolinate synthetase A protein. Quinolinate synthetase catalyzes the second step of the de novo biosynthetic pathway of pyridine nucleotide formation. In particular, quinolinate synthetase is involved in the condensation of dihydroxyacetone phosphate and iminoaspartate to form quinolinic acid. This synthesis requires two enzymes, a FAD-containing "B protein" and an "A protein".	1.16454e-157
NZ_AP019841.1\|WP_147004406.1\|2143821_2144451_+\|adenylate-kinase	gnl\|CDD\|234711	PRK00279, adk, adenylate kinase; Reviewed.	4.85021e-120
NZ_AP019841.1\|WP_147004417.1\|2159090_2159705_-\|50S-ribosomal-protein-L15	gnl\|CDD\|235523	PRK05592, rplO, 50S ribosomal protein L15; Reviewed.	4.89776e-63

>NZ_AP019841.1|WP_147004410.1|2148078_2148843_-|site-2-protease-family-protein
MKKLKDYYDRFKNLNPQYSGIKLGIIVAVVVYFIARIFFVVEISRDMIISLAVFVISMTFHEVAHGYVAYKFGDNTAKMNGRITLNPLRHIDLTGILLPILILLSGFKFLVGWAKPVPVNFDNLRPHRLGLFCVAIAGIVVNFIIAAVSLLLLKYLGKHLDIENIFMTILLYTYLINLLLGMFNLIPITPLDGGRIIYSFSGEKVRKFYNKIEKYGILIIFAIVYFGSRTLMNGFIAIVEFFLKLAGIQLNLMF
>NZ_AP019841.1|WP_147004409.1|2147083_2147965_-|hypothetical-protein
MRKLFLILGIFLMMNFEIYGFTQKEKIQETLSKLGVRQELIDETLALDYEIRDTQYFEEDEKIIRERVAKLEKLLQKDKRNYIAAQALITIFESKISGDYKKYLDLFEKYTPYEYTKTFSKMMYALEQGNMPEFEKYMDEIPKKYSDPAIIALSKIFVAKDFNEKQMLTEKVLKLLKDEGERRKIGVSDEEYHMMKLTYYLNKIRGLFDSGELKQAVAEYLDNVVNEDVSDEIRNYNLRAEVILYFNVVIMNEGIQEVMLKISNGAKLEDTWIARKIQEETEKDKDFLAKMVN
>NZ_AP019841.1|WP_147004408.1|2145825_2146995_-|hypothetical-protein
MKKLFILLSLPLFFSLNSKSLAYTRAELIQDRLSKIGIKQDIIDETIKFQYDIKDEKNFFTEEGKESDDFQKLKEIYEKDERNETLGATIAGAYMVGEQKDFKKARQYMDKISKYLSKFDRLSNELSYYKLKGDEKNSKKYYNLLKRSYKGTPVMDLVEILNDNLEMISFLNTLGDYLNEEDNNINNEANDLPDGFLYDEKNGIIQNKDEDENDDSDEAENDEEDNQTYSESIKEILDDGKETLKSQKEEADKYRRIADYFKIDKNQKEFGIPDDYVRGFELKFAEIEISKNMLNYGVGSAVKYYLDNVSTKDVSYEDVYFNEQSELALYLSIAQMLAAADESVINKYRKEFENTRVIKLLDEVLENERKKEKDKIENPDKNSKKHIKG
>NZ_AP019841.1|WP_010126479.1|2145333_2145711_+|DUF1304-family-protein
MSILAFILILFVAMEHYYILILEMYLNESKSIQKNFGLELDFLKDERVKKMLANQGLYNGFLASGLMWSLTESGEFQFQIAIFFLICIICAAIYGSVTVSKKIFLLQGIPALMAFILLLLPLIIS
>NZ_AP019841.1|WP_147004407.1|2144529_2145303_+|type-I-methionyl-aminopeptidase
MIIYKTLDEIKKIKKANEIIARLFEDVLPKYVKAGISTYELDQIAEDYIRSQGAIPGTKGYDIGSPYPPYPAATCISVNEVVVHGIPSKKQILKEGDILTIDTVTVLDGYFGDSAITYAVGEIDETSKKLMEVTEKARAIGIEAAHAGNRIGDIGHAIQEYVESFGFSLVRDFAGHGVGKEMHEDPIIPNYGRAGTGAKIENGMVITVEPMVNVGTYKVKILPDMWTAVTKDGKRSAQYEHSFAIIDGKPVILSVRD
>NZ_AP019841.1|WP_147004406.1|2143821_2144451_+|adenylate-kinase
MNIVLFGAPGAGKGTQAKELIKKYEIPQISTGDILRAAIANKTPLGLEAKKLMDEGKLVSDNIVNGLVEARLKEDDCKKGFILDGFPRTVAQAEELDKILAKSNREIEKVIALEVSDEEIIERITGRRVSKKTGKIYHIKYNPPVDENPEDLEQRADDNEETVKKRLAVYNEQTAPVLDFYKKQNKVYSVDGAKKLEEITKDIIDILEK
>NZ_AP019841.1|WP_147004405.1|2143262_2143520_+|hypothetical-protein
MNIRNLIKKMILIFGVIGISLTAFAAPRRNNKVVYVKKEPTRKIVRRRYIFVKVPKKKNSKVVYVKKEPTRRQRAAARARAARRR
>NZ_AP019841.1|WP_147004404.1|2141251_2143042_-|NAD-nucleotidase
MKKLLLLGLVLALLPAANLEAKTIKKAAGKNSQSTFELNVAHINDHHSHLEEEKMPIKLDGKTVTVHIGGLPRVGQEIKNFRKNNKNTLVVHAGDAVTGTLYYTLFEGKADAELMNAINFDAYTLGNHEFDDGNKFLRSFLDALKIPVVSSNVVPDKGSILEGKWKPYIIKNIGGQNVGIIGIDVVKKTKESSSPGEDIKFLDEVETAKKYAKELQDKGINKIVLLSHAGYEKNVEIGQKVDGIDLIISGDTHYLLGKEFEQFGLVPEADSYPKKVNSPNGNPVYIAEAWNYSYLLGEMKAKFDKNGVITELTPAPKLLIGDDFFEVKDADGKAVQLDEKEKSKILNSIKNNKNIVAIKNDPALSKLLERYQKEKTELGKRTIGKITEEIPGGSDNRVPSEHNKDGSFATTLVAESVLHKLRNTGTGNVDFVIGNAGNVRITLNPGDFSYDLAYSLLPFTSNTVFITDVTGAEVKQILEDAIDYVLNGGSTGAFPYGAGIRYEATKEGTLGTRVKKIEVFDFKANKWIPIDAKKTYMLAVNSYIAKGKDGYTTLGKITAQKRGNDTHLSDTKMFIDYLKEKKELGKPKSTNVIFKY
>NZ_AP019841.1|WP_147004403.1|2140043_2140940_-|quinolinate-synthase-NadA
MKERIKKLQKEKDVAILAHYYVDGDVQEIADYVGDSFYLAKTATKLKNKTIIMAGVYFMGESIKILNPEKTVYMVDIYADCPMAHMITIKKIKEMREKYSDLSVVCYINSTAEIKAHCDVCITSSNALKIVSKLKEKNIFIVPDGNLASYIAKQVKNKNIILNEGYCCVHNLVHLENVKKLKEEYPNAKVLAHPECKEEILKLADYIGSTSGIIAEALKEGDEFIIVTERGIRFEIYKKAPDKKLHFADTLICRSMKKNTLEKIEKILTEGGDELKVDDEIAKKALIPLERMLELAGD
>NZ_AP019841.1|WP_147004402.1|2138740_2140042_-|L-aspartate-oxidase
MKAENYDVVIIGSGVAALICALTLDDSINICLITKKKLRDSNSYLAQGGISVCRGKEDREDYIEDTLIAGHYKNDRKAVEILVDESEEAVKTLIEMGVKFTGDKKGLFYTREGGHRKFRILYCEDRTGKYIMESLIKKVLEKKNIKTIENCEFLDIVEENNTCLGIVAKNKEIFSIRSKFTVLATGGIGGIYKNTTNFSHIRGDGIAAAIRHNIELKDISYVQIHPTTFYTKDNERKFLISESVRGEGAVLLNQKLQRFTDELKPRDEVTRAILEEMKKDKSEYEWLDFSTIKLDIEKRFPNIYKQLIKKDINVLKDKVPVVPAQHYTMGGIKVNMDSKTSMKNLYAVGEVACTGVHGQNRLASNSLLESVVFGKRAAHSINVENNVSNYNNVTVDNAFKNIEKEVFEIENKIKENKNIIEQRIKEDEFEKNR
>NZ_AP019841.1|WP_015770275.1|2149920_2150232_-|hypothetical-protein
MKFDDLKKGAEDALKKTVDGAKDLADKAADKTKEIAGSEVAQNIKKGTEEVFEKTVEGAKDLANKAANNKIVKDVEKGAEKAVDKTVEGAKDLAGKVTGMFKK
>NZ_AP019841.1|WP_147004411.1|2150281_2152111_-|glutamine--fructose-6-phosphate-transaminase-(isomerizing)
MCGIVGYIGAKNAQDFVIDGLEKLEYRGYDSAGIAVNTGSEKFEIVKKVGRLKNLADELEKHPLKGTVAIGHTRWATHGKPSDENSHPHFNKDKTLVVVHNGIIENYLELKRDLIAKGYEFKSETDTEVVAHLLDELYTGDILETVKKLLKVIKGAYALGIMSVKEPDRIIAARKESPLIVGIGKGENFIASDIPAILKYTRDVYLIENNEIVEIKKDSVKIMDIDGNEIKRDITHIEWDLEAASKGGYEYFMEKEIFEQPEVLVKTLNSRVDENYNINFDDAGLTKEYLSGINDIYIVACGTAYHAGLAGKHIIEKKTRIRVDVDIASEFRYRNPVIDDKALVIVLSQSGETLDTLEAMKEAKRHGARVVAITNVVGSSVAREADHVIYTWAGPEIAVASTKAYTTQMVILNLMAIDFAYKFGKITKDEAAEDIKKLYEVEQSIQRMLEYDEKIKDVADKIKDSESMFYLGRGLDYVIAVEGALKSKEISYIHSEAFASGELKHGTIALITDGVPVVVNATQSDLFEKSVSNIKEVTSRGAYVIAIAKEGNTVVEEVADEVFYIPNVEDDYAGFPTIVIHQLLAYYLSKLKGNDVDKPRNLAKSVTVE
>NZ_AP019841.1|WP_147004412.1|2152509_2153394_+|peptidyl-prolyl-cis-trans-isomerase
MNNKLKMGILTALCLFALSCGNGNGQSGKVLFESSDKKIKVYENEVNIELEKNLFSSGISQKDLTPDQIKQMKQSIIKNIALNRALAIKGKEEKLDKDKKYTENQDVIKEQLLASLTLVNEVNGKVNVTDEEAKKYYDANPAAFTLQEDTAKLQIIAFKATDSATASQVLKDVLANPNNFTTYARKYNANIPGVPENGETSEIPESRLGALGTAIKNVAAGQIVNSVVKVDNALYIVRVLEKNSKGVIPFEKVKETIKTQMRNQKRQIEQQNYLKSVSDEFKLSNMDDAIKNIK
>NZ_AP019841.1|WP_147004413.1|2153556_2155110_+|hypothetical-protein
MKILKYLLSAVLLVLVIFLFGIMFSSNIVSFMARSKHSEFENVKYSVKNSQMVFDNFAVNGKNLGKGRATVGIVRTGLFKLVPKLTISNLKLEDVNLESIYKEKNSQIDTFTEKIDSLSAQEKSDKTTADFIKETTDKVASLTTNTDNLINSKWRENIEKTNILKKNYAELTDLKSKAQKIVELNNEIKPLVKSINSEKENIEKNISEIELERDIALANVSDNLTKLEKEISLNDFNNNSSSSVQNMNLYIFLDKGKDLETSLNTALKATALVKEIKDLNIRISDVDINEGKIVAKGLNGNFSQVSGEILLQNNSKALIKGQNNGYEITYNKDNFTSKTLFAANKIGSLIEYSKNDLIAGKTVKLSSELVMENNNFKNLNHTVLTDEEKTLLTQKIENLRNNNYQQIMTKYEEDNKNIETLIDTVYAQKDKLDKLQRDLLSLGTIIAVEQPAVTNNENTPQSNNQNNSSAINILNNNASSSNTNNSNNDNNNTNSSSNNAEKQNNNQNTNKINIGNR
>NZ_AP019841.1|WP_010139318.1|2155206_2155956_+|phosphonate-ABC-transporter-ATP-binding-protein
MLLSVKNISKEYNNGTTALKNVSFDVEKGEFISIIGPSGSGKSTLLRSINKMIDISQGSILFENRNIEKLKKKEIELVRREIGMIFQNYNLVERLTVIENVLHGRLGYKSVFSGILGIYSEEEKKEAFKFLEKLNMTKYAYQKCNELSGGQKQRVGIARAIMQKPKLLLCDEPIASLDPKTAENIMDYLKKIVTELKITCIVNLHQVDIAKKYSNRIIALNKGEKIFDDKPEYLTDDIIEFIYKDEELD
>NZ_AP019841.1|WP_147004414.1|2155968_2156763_+|ABC-transporter-permease-subunit
MNLNEKDIFKQRFYSKIIFVLIIILLYIISSIISGFQNGMAFSSIPAGIFWLIQKFIPTQNALQYFPEIINSALQTVLLAITATTISAIFALFLAIIGSNSTGINIFTKIITKVIASFFRNMPIVAWSLILVFSFKQSQFTGFLALFLITFGYLTRAFSETIDDIAGDVIEALKSVGASYFQIIFCGVIPSISSQLLSWLLFFIETGVRESTLVGILTGTGIGFTFSLYYKSFRYDAAGLVILVVTIIVVGVEMLSNKLRSELM
>NZ_AP019841.1|WP_147004415.1|2156768_2157644_+|ABC-transporter-permease-subunit
MNNSLYYKNQKEINKIKKKVNILLEKIKIKKLTKSRIYLYTTLSVLLIITVYTLSTMDFGGVNIIEATRHFFKDLKTMFFSPNLSDRYTYAQVFQSLAVTIALAVLTTIIGSFIALFLSFFAAQNLSSKHLSKTIKLGLSFIRAIPTILWVMVFSVVANVGVEAAIIGMTFHSIAYLVKAYSESIEEIDSGIIEALRATGASFWKIIFQGVLPSTITSILSWTFIRFEINFTNAVLVGAAAGAGGIGYDMFMSGTMYFDIREIGVFVYLIFGVAIILEFISYLLRKKYLKN
>NZ_AP019841.1|WP_147004416.1|2157736_2159044_-|preprotein-translocase-subunit-SecY
MTLAEAVSSRVKAIFNIPELEKRVTFTLLMIMVARVGIHIAVPGINTEAFKNFQQGNAIAQFLNLFSGGAVERASIFALGIVPYINASIVFQLLGVIFPKIDEMQKEGGKERDKITQWSRYVTIVLAIIQSFGIAILMQNQGLVLEPGPKFVLSTVVLITGGTSFLMWISERISIRGIGNGTSMLIFLNIVAGLPSVISNMYAGLPSGMGKVLLGLSVIVFIVFIALMVIVQLAERRIPIQYAGKGSLGFGGGQSTVGKRTYLPLKINMSGVMPIIFASVLMAAPPFLVSMMKSGSLKNFLAAQFEPKGIFYLLLFAILITVFSFFYTLTIAFDPDKVSDDLKQSGGTIPTVRAGKETADYLEKVATRVTFGSAIFLSLLGIMPNIWFGYILNLPVMLGGTSLLILVGTAVEILLQMDSFLAVKHMKSFVNRRHR
>NZ_AP019841.1|WP_147004417.1|2159090_2159705_-|50S-ribosomal-protein-L15
MNLNELRPAAGSKRERRRVGRGHGTGWGKTAGKGHNGQKQRSGSYVSPIFEGGQMPIIRRIPKRGFSNAPFKKDIIAITLADIVERFNDGDVVSLETLVENGIVKNPKFIKKYSDEALRNVKGRRAVKEYLNSNIEAYVKEKELTSLLKIIGNTEVNKKLTVKAHRISKAAKELIEKAGGSVELLEIKSYSAKAGNNKKEDGDK
>NZ_AP019841.1|WP_006806072.1|2159711_2159891_-|50S-ribosomal-protein-L30
MSKVKVTLVKGINGRKPNHVATVKSLGLRKISQSAVHNKTADIEGKIKLVSYLLKVEEV

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_AP019841_3	3.1\|1396575\|58\|NZ_AP019841\|CRISPRCasFinder	1396575-1396632	58	NZ_AP019842	Leptotrichia wadei strain JMUB3936 plasmid pJMUB3934p1, complete sequence	56-113	0	1.0

1. spacer 3.1|1396575|58|NZ_AP019841|CRISPRCasFinder matches to NZ_AP019842 (Leptotrichia wadei strain JMUB3936 plasmid pJMUB3934p1, complete sequence) position: , mismatch: 0, identity: 1.0

aaaaaaatatagatgtttattggcttttttccatctacaaaactattataccacataa	CRISPR spacer
aaaaaaatatagatgtttattggcttttttccatctacaaaactattataccacataa	Protospacer
**********************************************************

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

283476 : 326108

Clostridium_phage(17.65%)

tRNA,terminase,tail,plate,integrase,capsid

attL 288909:288925|attR 308336:308352

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_147002872.1\|283476_284748_+\|tRNA	serine--tRNA ligase	A0A1B1IVT2	uncultured_Mediterranean_phage	1.0e-95	49.3
WP_147002873.1\|285000_285720_+	glycoside hydrolase family 25 protein	NA	NA	NA	NA
WP_010128740.1\|285824_286808_+	class II fructose-1,6-bisphosphate aldolase	NA	NA	NA	NA
WP_147002874.1\|287111_288725_+	CTP synthase	A0A1J0FA14	Only_Syngen_Nebraska_virus	9.2e-147	50.2
WP_147002875.1\|288840_289305_-	DUF333 domain-containing protein	NA	NA	NA	NA
288909:288925	attL	NA	NA	NA	NA
WP_147002876.1\|289548_290598_-\|integrase	tyrosine-type recombinase/integrase	A0A0A8WF08	Clostridium_phage	2.5e-92	51.1
WP_146964860.1\|290603_290780_-	transcriptional regulator	A0A0S2MV91	Bacillus_phage	3.5e-07	49.0
WP_147002877.1\|290819_291542_-	phage recombination protein Bet	A0A1P8BKG8	Lactococcus_phage	1.5e-35	45.0
WP_147002878.1\|291554_292481_-	DUF1351 domain-containing protein	NA	NA	NA	NA
WP_147002879.1\|292489_293149_-	YqaJ viral recombinase family protein	A0A0P0IJW5	Lactobacillus_phage	5.3e-16	32.9
WP_147002880.1\|293158_293905_-	hypothetical protein	NA	NA	NA	NA
WP_147002881.1\|293935_294115_-	hypothetical protein	NA	NA	NA	NA
WP_147002882.1\|294279_294495_-	hypothetical protein	NA	NA	NA	NA
WP_147002883.1\|294505_294916_-	hypothetical protein	NA	NA	NA	NA
WP_172617423.1\|295097_295547_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_147002885.1\|295784_296543_+	VRR-NUC domain-containing protein	NA	NA	NA	NA
WP_147002886.1\|296652_296850_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_147002887.1\|297420_298110_-	hypothetical protein	NA	NA	NA	NA
WP_147002888.1\|298202_298382_+	hypothetical protein	NA	NA	NA	NA
WP_172617424.1\|298397_298655_-	DUF1883 domain-containing protein	NA	NA	NA	NA
WP_147002890.1\|298822_299062_+	hypothetical protein	NA	NA	NA	NA
WP_147002891.1\|299399_300161_+	helix-turn-helix domain-containing protein	A0A0E3Y6I4	Fusobacterium_phage	2.1e-32	69.8
WP_147004543.1\|300147_300813_+	ATP-binding protein	A0A2P1JXE1	Rhodococcus_phage	1.3e-06	25.5
WP_147002892.1\|300821_301028_+	hypothetical protein	NA	NA	NA	NA
WP_147002893.1\|301049_301427_+	hypothetical protein	NA	NA	NA	NA
WP_147002894.1\|301430_301787_+	RusA family crossover junction endodeoxyribonuclease	G7YZ89	Streptococcus_phage	5.0e-05	31.8
WP_147002895.1\|301787_302285_+	dUTP diphosphatase	NA	NA	NA	NA
WP_147002896.1\|302284_303052_+	phage antirepressor KilAC domain-containing protein	A0A0C5AEJ9	Bacteriophage	4.1e-20	37.0
WP_147002897.1\|303160_304402_+	Fic family protein	Q9AZ49	Lactococcus_phage	1.9e-35	27.5
WP_172617425.1\|304459_304636_+	hypothetical protein	NA	NA	NA	NA
WP_147002898.1\|304602_305319_+	hypothetical protein	A0A0E3Y6J2	Fusobacterium_phage	4.4e-16	32.5
WP_147002899.1\|305320_305524_+	hypothetical protein	NA	NA	NA	NA
WP_147002900.1\|305637_305832_+	hypothetical protein	NA	NA	NA	NA
WP_018450301.1\|306019_306166_+	hypothetical protein	NA	NA	NA	NA
WP_147002901.1\|306190_306421_+	hypothetical protein	NA	NA	NA	NA
WP_147002902.1\|306558_307341_+	TIR domain-containing protein	NA	NA	NA	NA
WP_147002903.1\|307418_307946_+	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA
WP_147002904.1\|308105_308507_+\|terminase	terminase small subunit	Q9AZ67	Lactococcus_phage	4.3e-13	41.5
308336:308352	attR	NA	NA	NA	NA
WP_147002905.1\|308499_309951_+\|terminase	phage terminase large subunit	A0A2H4J7G6	uncultured_Caudovirales_phage	2.1e-73	35.1
WP_147002906.1\|309963_312927_+	DUF935 family protein	H6V8N8	Pseudomonas_phage	5.5e-12	29.5
WP_147002907.1\|312905_313121_+	hypothetical protein	NA	NA	NA	NA
WP_172617426.1\|313180_313660_+	phage virion morphogenesis protein	NA	NA	NA	NA
WP_147002909.1\|313738_314689_+	hypothetical protein	NA	NA	NA	NA
WP_147002910.1\|314712_315087_+	hypothetical protein	NA	NA	NA	NA
WP_147002911.1\|315107_316112_+\|capsid	major capsid protein	NA	NA	NA	NA
WP_147002912.1\|316124_316550_+	hypothetical protein	NA	NA	NA	NA
WP_147002913.1\|316561_317020_+	hypothetical protein	NA	NA	NA	NA
WP_147002914.1\|317071_318205_+	hypothetical protein	NA	NA	NA	NA
WP_147002915.1\|318222_318651_+	hypothetical protein	A0A090DCP2	Clostridium_phage	1.3e-10	34.7
WP_147002916.1\|318668_319118_+	hypothetical protein	NA	NA	NA	NA
WP_147002917.1\|319129_319315_+	hypothetical protein	NA	NA	NA	NA
WP_147002918.1\|319304_322034_+\|tail	phage tail tape measure protein	A0A1L6BY19	Clostridium_phage	2.5e-43	43.3
WP_147002919.1\|322037_322724_+	hypothetical protein	NA	NA	NA	NA
WP_147002920.1\|322727_323663_+	hypothetical protein	NA	NA	NA	NA
WP_147002921.1\|323662_324046_+	hypothetical protein	NA	NA	NA	NA
WP_147002922.1\|324048_324513_+	DUF2577 family protein	NA	NA	NA	NA
WP_147002923.1\|324515_324995_+	DUF2634 domain-containing protein	NA	NA	NA	NA
WP_147002924.1\|325010_326108_+\|plate	baseplate J/gp47 family protein	NA	NA	NA	NA

DBSCAN-SWA_2

477736 : 506388

Bacteriophage(50.0%)

transposase,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_147003035.1\|477736_478984_+\|transposase	IS200/IS605 family element transposase accessory protein TnpB	A0A1L2BWW3	Bacteriophage	9.2e-62	39.5
WP_147003036.1\|479105_479954_+	sulfate ABC transporter permease subunit CysT	NA	NA	NA	NA
WP_147003037.1\|479968_480808_+	sulfate ABC transporter permease subunit	NA	NA	NA	NA
WP_147003038.1\|481011_484581_+	pyruvate:ferredoxin (flavodoxin) oxidoreductase	NA	NA	NA	NA
WP_147004547.1\|484748_484886_+\|transposase	transposase family protein	NA	NA	NA	NA
WP_147003039.1\|484858_485104_+\|transposase	transposase family protein	NA	NA	NA	NA
WP_147003040.1\|485176_486655_+	ABC-F type ribosomal protection protein Lsa(C)	A0A1B0RXA0	Streptococcus_phage	1.5e-34	25.9
WP_147003041.1\|488035_491047_+	single-stranded-DNA-specific exonuclease RecJ	A7KV88	Bacillus_phage	5.9e-78	32.7
WP_147003042.1\|491064_491964_+	YegS/Rv2252/BmrU family lipid kinase	NA	NA	NA	NA
WP_147003043.1\|492835_494425_+	DUF1957 domain-containing protein	NA	NA	NA	NA
WP_147003044.1\|494593_496054_+	oligosaccharide flippase family protein	NA	NA	NA	NA
WP_147003045.1\|496791_496977_+	hypothetical protein	NA	NA	NA	NA
WP_147003046.1\|497206_498454_+\|transposase	IS200/IS605 family element transposase accessory protein TnpB	A0A1L2BWW3	Bacteriophage	3.4e-64	40.7
WP_147003047.1\|498895_499990_+\|tRNA	tRNA 2-thiouridine(34) synthase MnmA	NA	NA	NA	NA
WP_147003048.1\|500179_500488_-	hypothetical protein	NA	NA	NA	NA
WP_172617428.1\|500574_500715_-	hypothetical protein	NA	NA	NA	NA
WP_147003049.1\|500813_501329_-	tetratricopeptide repeat protein	NA	NA	NA	NA
WP_147003050.1\|501363_501948_-	hypothetical protein	NA	NA	NA	NA
WP_147003051.1\|502697_504017_+	glutamate-1-semialdehyde 2,1-aminomutase	NA	NA	NA	NA
WP_147003054.1\|504158_505325_+	nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase	NA	NA	NA	NA
WP_147003055.1\|505486_506056_+\|transposase	ISAs1 family transposase	NA	NA	NA	NA
WP_147003057.1\|506001_506388_+\|transposase	ISAs1 family transposase	NA	NA	NA	NA

DBSCAN-SWA_3

1090364 : 1101053

Bacillus_virus(33.33%)

protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_147003541.1\|1090364_1091594_+\|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	G3M9Z9	Bacillus_virus	1.2e-125	58.9
WP_147003542.1\|1091710_1094086_+	endopeptidase La	A0A0R6PGP8	Moraxella_phage	1.3e-173	43.3
WP_147003543.1\|1094291_1097798_-	methionine synthase	A0A140XBC7	Dickeya_phage	1.2e-10	51.7
WP_018498041.1\|1098172_1098412_+	thiol reductase thioredoxin	A0A1I9S651	Bacillus_phage	1.4e-14	50.0
WP_147003544.1\|1098558_1098936_+	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	G3MBF1	Bacillus_virus	2.6e-20	46.6
WP_147003545.1\|1098953_1101053_+	class 1b ribonucleoside-diphosphate reductase subunit alpha	U5PY35	Bacillus_phage	1.3e-246	59.4

DBSCAN-SWA_4

1397157 : 1406680

Listeria_phage(14.29%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_147003783.1\|1397157_1397580_+	ImmA/IrrE family metallo-endopeptidase	A8ATJ8	Listeria_phage	9.9e-08	28.2
WP_147003784.1\|1397633_1397819_+	excalibur calcium-binding domain-containing protein	NA	NA	NA	NA
WP_147003785.1\|1397846_1398434_+	hypothetical protein	NA	NA	NA	NA
WP_172617448.1\|1398631_1398787_+	hypothetical protein	NA	NA	NA	NA
WP_147003786.1\|1399255_1399828_-	hypothetical protein	NA	NA	NA	NA
WP_147003787.1\|1399989_1400211_+	hypothetical protein	NA	NA	NA	NA
WP_172617449.1\|1400299_1401181_+	conserved phage C-terminal domain-containing protein	A0A0M3LS90	Mannheimia_phage	2.0e-34	61.9
WP_147004575.1\|1401167_1401833_+	ATP-binding protein	A0A2P1JXE1	Rhodococcus_phage	2.2e-06	27.3
WP_147003788.1\|1401841_1402135_+	hypothetical protein	NA	NA	NA	NA
WP_147003789.1\|1402599_1402851_+	hypothetical protein	NA	NA	NA	NA
WP_147003790.1\|1402840_1403233_+	hypothetical protein	A0A1J0GV60	Vibrio_phage	1.2e-12	40.4
WP_147004576.1\|1403286_1403709_+	hypothetical protein	M1PL93	Synechococcus_phage	8.9e-09	34.1
WP_147003791.1\|1403727_1403928_+	Rha family transcriptional regulator	NA	NA	NA	NA
WP_147003792.1\|1403873_1404341_+	ORF6C domain-containing protein	A0A0U4IS08	Exiguobacterium_phage	3.9e-05	29.5
WP_147003793.1\|1404342_1404531_+	hypothetical protein	NA	NA	NA	NA
WP_147003794.1\|1404491_1405268_+	hypothetical protein	NA	NA	NA	NA
WP_147003795.1\|1405267_1405486_+	hypothetical protein	NA	NA	NA	NA
WP_147003796.1\|1405677_1406058_+	hypothetical protein	NA	NA	NA	NA
WP_147003797.1\|1406073_1406388_+	hypothetical protein	NA	NA	NA	NA
WP_147003798.1\|1406407_1406680_+	DUF5052 domain-containing protein	F8WQ63	Bacillus_phage	2.0e-09	39.1

DBSCAN-SWA_5

1409916 : 1436915

Fusobacterium_phage(28.57%)

transposase,terminase,tail,plate,capsid

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_147003805.1\|1409916_1411119_+\|terminase	PBSX family phage terminase large subunit	A7YGT8	Staphylococcus_virus	4.4e-101	47.5
WP_147003806.1\|1411131_1412364_+	hypothetical protein	NA	NA	NA	NA
WP_147003807.1\|1412356_1412932_+\|capsid	minor capsid protein	D6PSX3	Lactobacillus_phage	6.4e-10	39.8
WP_147003808.1\|1413050_1413671_+	hypothetical protein	NA	NA	NA	NA
WP_147003809.1\|1413680_1414073_+	hypothetical protein	NA	NA	NA	NA
WP_147003810.1\|1414082_1415138_+\|capsid	major capsid protein	A0A2H4J044	uncultured_Caudovirales_phage	1.4e-15	25.9
WP_172617451.1\|1415147_1415321_+	hypothetical protein	NA	NA	NA	NA
WP_147003811.1\|1415320_1415632_+	hypothetical protein	NA	NA	NA	NA
WP_068157229.1\|1415642_1415924_+	hypothetical protein	NA	NA	NA	NA
WP_147003812.1\|1415874_1416297_+	hypothetical protein	L7TME2	Rhizobium_phage	1.1e-06	26.9
WP_147003813.1\|1416296_1416677_+	hypothetical protein	NA	NA	NA	NA
WP_147003814.1\|1416660_1417125_+	hypothetical protein	NA	NA	NA	NA
WP_147003815.1\|1417124_1418273_+	hypothetical protein	NA	NA	NA	NA
WP_147003816.1\|1418288_1418720_+	DUF3277 family protein	NA	NA	NA	NA
WP_147003817.1\|1418899_1419586_+	hypothetical protein	NA	NA	NA	NA
WP_172617452.1\|1419654_1419798_+	hypothetical protein	NA	NA	NA	NA
WP_147004577.1\|1419912_1420449_+	Rha family transcriptional regulator	A0A0E3Y6H2	Fusobacterium_phage	4.4e-45	51.1
WP_147003818.1\|1420534_1420753_+	hypothetical protein	NA	NA	NA	NA
WP_172617453.1\|1420827_1421049_+	hypothetical protein	NA	NA	NA	NA
WP_147003820.1\|1421312_1422245_+\|tail	phage tail tape measure protein	NA	NA	NA	NA
WP_172617454.1\|1422241_1422406_+	hypothetical protein	NA	NA	NA	NA
WP_172617455.1\|1422576_1422750_+	hypothetical protein	NA	NA	NA	NA
WP_147003821.1\|1422782_1423553_+	hypothetical protein	NA	NA	NA	NA
WP_172617456.1\|1423712_1423859_+	hypothetical protein	NA	NA	NA	NA
WP_147003822.1\|1423964_1424210_+	hypothetical protein	NA	NA	NA	NA
WP_147003823.1\|1424285_1424624_+	hypothetical protein	NA	NA	NA	NA
WP_172617457.1\|1424653_1424809_+	hypothetical protein	NA	NA	NA	NA
WP_172617458.1\|1425138_1425312_+	hypothetical protein	NA	NA	NA	NA
WP_147003824.1\|1425469_1425745_+	hypothetical protein	NA	NA	NA	NA
WP_147003825.1\|1425852_1426086_+	hypothetical protein	NA	NA	NA	NA
WP_147003826.1\|1426332_1426881_+	hypothetical protein	NA	NA	NA	NA
WP_147003827.1\|1426890_1427268_+	hypothetical protein	NA	NA	NA	NA
WP_147003828.1\|1427280_1427583_+	hypothetical protein	NA	NA	NA	NA
WP_147003829.1\|1427665_1427944_+\|plate	baseplate J/gp47 family protein	NA	NA	NA	NA
WP_147003830.1\|1428058_1428457_+	hypothetical protein	NA	NA	NA	NA
WP_147003831.1\|1428538_1428748_+	hypothetical protein	NA	NA	NA	NA
WP_147003832.1\|1431739_1432114_+	M15 family metallopeptidase	A0A0E3Y6B0	Fusobacterium_phage	2.7e-17	43.0
WP_147003833.1\|1434036_1434297_+	hypothetical protein	NA	NA	NA	NA
WP_147003834.1\|1434379_1435078_+	hypothetical protein	NA	NA	NA	NA
WP_172617459.1\|1435204_1435345_-	hypothetical protein	NA	NA	NA	NA
WP_147003835.1\|1435817_1436915_+\|transposase	IS200/IS605 family element transposase accessory protein TnpB	A0A288TXV8	Enterococcus_phage	2.5e-71	42.5

DBSCAN-SWA_6

1886515 : 1895523

Phaeocystis_pouchetii_virus(16.67%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_147004207.1\|1886515_1888855_+	endonuclease MutS2	F2QAF8	Phaeocystis_pouchetii_virus	1.2e-14	27.2
WP_147004208.1\|1888885_1890022_+	AAA family ATPase	A0A2I7RNF1	Vibrio_phage	7.7e-07	31.2
WP_147004209.1\|1890005_1890659_+	TIGR02646 family protein	NA	NA	NA	NA
WP_147004210.1\|1890701_1892153_+\|tRNA	cysteine--tRNA ligase	F1C984	Moumouvirus	2.3e-48	34.6
WP_147004211.1\|1892178_1893387_+	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC	Q9HH70	Methanothermobacter_phage	8.4e-44	33.3
WP_147004212.1\|1893425_1894373_+	peptidoglycan DD-metalloendopeptidase family protein	A0A2H4JIA8	uncultured_Caudovirales_phage	1.8e-17	38.7
WP_147004213.1\|1894425_1895523_-	chorismate synthase	A0A291AU41	Pandoravirus	3.3e-55	37.1

Anti-CRISPR protein detection

Acr_ID: NZ_AP019841.1|WP_147002890.1|298822_299062_+|hypothetical-protein

Click the colored protein region to show detailed information

Acr_ID: NZ_AP019841.1|WP_147003406.1|913187_913769_+|GNAT-family-N-acetyltransferase

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Acr_ID: NZ_AP019841.1|WP_147003787.1|1399989_1400211_+|hypothetical-protein

Click the colored protein region to show detailed information

Acr ID

Acr position

Acr size

Homology with known anti

Neighbor HTH/AcRanker

Neighbor Aca

In prophage

Protospacer in prophage

NZ_AP019841.1|WP_147002890.1|298822_299062_+|hypothetical-protein

298822_299062_+

79 aa aa

hit_Aca_id	identity	query_coverage	hit_coverage
gnl\|BL_ORD_ID\|82	0.9493670886075949	1	1.0

283476-326108

NZ_AP019841.1|WP_147003406.1|913187_913769_+|GNAT-family-N-acetyltransferase

913187_913769_+

193 aa aa

hit_Aca_id	identity	query_coverage	hit_coverage
gnl\|BL_ORD_ID\|89	0.8860103626943006	1	1.0

NZ_AP019841.1|WP_147003787.1|1399989_1400211_+|hypothetical-protein

1399989_1400211_+

73 aa aa

hit_Aca_id	identity	query_coverage	hit_coverage
gnl\|BL_ORD_ID\|82	0.8055555555555556	1.0	0.9113924050632911

1397157-1406680

2. NZ_AP019842

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NZ_AP019842_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_AP019842_1

32-138

Orphan

Consensus_repeat	Method
AAAAATATCTTGCATTATTGCAAG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_AP019842_1

>merge|NZ_AP019842|1|32-138|CRISPRCasFinder
AAAAATATCTTGCATTATTGCAAGTTATGTGGTATAATAGTTTTGTAGATGGAAAAAAGCCAATAAACATCTATATTTTTTTAAAAATTATCTTGCATTATTGCAAG

>NZ_AP019842|1|1|32-138|CRISPRCasFinder
AAAAATATCTTGCATTATTGCAAG	TTATGTGGTATAATAGTTTTGTAGATGGAAAAAAGCCAATAAACATCTATATTTTTTTA
AAAATTATCTTGCATTATTGCAAG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_AP019842.1\|WP_147004600.1\|1683_1965_+\|hypothetical-protein	unknown	unknown	unknown
NZ_AP019842.1\|WP_147004602.1\|2956_3211_+\|YqaJ-viral-recombinase-family-protein	unknown	unknown	gnl\|CDD\|378216
NZ_AP019842.1\|WP_147004599.1\|1095_1365_+\|hypothetical-protein	unknown	unknown	unknown
NZ_AP019842.1\|WP_172617447.1\|867_1014_+\|hypothetical-protein	unknown	unknown	unknown
NZ_AP019842.1\|WP_147004601.1\|2388_2592_+\|hypothetical-protein	unknown	unknown	unknown
NZ_AP019842.1\|WP_147004603.1\|3241_3508_+\|hypothetical-protein	unknown	unknown	unknown
NZ_AP019842.1\|WP_172617487.1\|162_300_+\|hypothetical-protein	unknown	unknown	unknown
NZ_AP019842.1\|WP_147004598.1\|266_506_+\|hypothetical-protein	unknown	unknown	unknown
NZ_AP019842.1\|WP_147004604.1\|3763_3967_+\|hypothetical-protein	unknown	unknown	unknown
NZ_AP019842.1\|WP_147003780.1\|505_709_+\|hypothetical-protein	unknown	unknown	unknown

>NZ_AP019842.1|WP_172617487.1|162_300_+|hypothetical-protein
MSFSEGLKYEEGARKNNKRMGRRKLLWLSTQGIAKWNTMKAVLKN
>NZ_AP019842.1|WP_147004598.1|266_506_+|hypothetical-protein
MEYYESGFKELKKRIPDVTEDEIKGFEYDGIYDEYELSPSEYGNEDLIKIMKKSDMIHNVSNIKCVIVGRKRKFSLGEM
>NZ_AP019842.1|WP_147003780.1|505_709_+|hypothetical-protein
MDKMCELAKTISDLKLTKCEIRKGLSGFEVLTISKRCKLTVNETCELIERLLENNTNIKFLKNEVTK
>NZ_AP019842.1|WP_172617447.1|867_1014_+|hypothetical-protein
MKFGALKIVNENSQKAREEIEAKKFKNRIKKLFNKKQPKRLILNPDWK
>NZ_AP019842.1|WP_147004599.1|1095_1365_+|hypothetical-protein
MRKELKKIEKFVKQNCGNFAYDEEIGTKEIKELKGLTIISEYRGWDQKYGEPAFETKIFNKAGIELAYKEFLPVFSYEEFVGNDDWYIF
>NZ_AP019842.1|WP_147004600.1|1683_1965_+|hypothetical-protein
MQNFRKLPAMKKKIAGASNKLGKMNEMIEKIKNDSEIDENIKKLMEQNLRYYVQKNTVSMQGLKVGGGNDVRKKFDKINNFNCSNCSNADRNN
>NZ_AP019842.1|WP_147004601.1|2388_2592_+|hypothetical-protein
MTRLINEFEFEDLHNPEQTVIKDFKNEFIIVHFRKMFEQELMEIKSKFKIYSKLDTIRLKLLYIKCL
>NZ_AP019842.1|WP_147004602.1|2956_3211_+|YqaJ-viral-recombinase-family-protein
MGKNKYRNIIDVWKDKTGRIQNNFASPAAQRGKNLKNIFNSYKEDNLDKKILEVNKMYIHPKYDFIRANLDGEIVYQDKKGYLK
>NZ_AP019842.1|WP_147004603.1|3241_3508_+|hypothetical-protein
MLRNGRTIFLKLFISNFTLLLVTGYEYAVLVAEIKFECFKNEDTTPFDLDKRLQTIVINRSDWEDEIQELLNKEIEFWECVKTIQNQE
>NZ_AP019842.1|WP_147004604.1|3763_3967_+|hypothetical-protein
MDYLTADTKEINQKLINLIKRVDAVRKYLHDKEKELDNAKREKIKSIKEFVFKYRPEYLVYLVENKK

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_AP019842_1	1.1\|56\|59\|NZ_AP019842\|CRISPRCasFinder	56-114	59	NZ_AP019842	Leptotrichia wadei strain JMUB3936 plasmid pJMUB3934p1, complete sequence	56-114	0	1.0

1. spacer 1.1|56|59|NZ_AP019842|CRISPRCasFinder matches to NZ_AP019842 (Leptotrichia wadei strain JMUB3936 plasmid pJMUB3934p1, complete sequence) position: , mismatch: 0, identity: 1.0

ttatgtggtataatagttttgtagatggaaaaaagccaataaacatctatattttttta	CRISPR spacer
ttatgtggtataatagttttgtagatggaaaaaagccaataaacatctatattttttta	Protospacer
***********************************************************

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site	Prophage annotation

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

3. NZ_AP019843

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NZ_AP019843_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_AP019843_1

22014-22115

Orphan

Consensus_repeat	Method
TTTTTTAAAAATATCTTGCATTATTGCAAG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_AP019843_1

>merge|NZ_AP019843|1|22014-22115|CRISPRCasFinder
TTTTTTAAAAATATCTTGCATTATTGCAAGTTATGTGGTATAATAGTTTTGTAGAAAAAATAAACATCTATATTTTTTAAAATTATCTTGCATTATTGCAAG

>NZ_AP019843|1|1|22014-22115|CRISPRCasFinder
TTTTTTAAAAATATCTTGCATTATTGCAAG	TTATGTGGTATAATAGTTTTGTAGAAAAAATAAACATCTATA
TTTTTTAAAATTATCTTGCATTATTGCAAG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_AP019843.1\|WP_172617510.1\|22848_22998_+\|hypothetical-protein	unknown	unknown	unknown
NZ_AP019843.1\|WP_147004661.1\|21208_21391_-\|ImmA/IrrE-family-metallo-endopeptidase	unknown	unknown	gnl\|CDD\|368753
NZ_AP019843.1\|WP_147003772.1\|27450_27645_+\|hypothetical-protein	unknown	unknown	unknown
NZ_AP019843.1\|WP_147004659.1\|25979_26414_+\|hypothetical-protein	unknown	unknown	unknown
NZ_AP019843.1\|WP_147004657.1\|24926_25094_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|378216
NZ_AP019843.1\|WP_147004650.1\|17149_17335_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|236153
NZ_AP019843.1\|WP_172617507.1\|15376_15892_-\|hypothetical-protein	unknown	unknown	unknown
NZ_AP019843.1\|WP_147004655.1\|23159_23339_+\|hypothetical-protein	unknown	unknown	unknown
NZ_AP019843.1\|WP_147004660.1\|27652_27844_+\|hypothetical-protein	unknown	unknown	unknown
NZ_AP019843.1\|WP_147004658.1\|25498_25723_+\|hypothetical-protein	unknown	unknown	unknown
NZ_AP019843.1\|WP_172617508.1\|19435_19573_-\|hypothetical-protein	unknown	unknown	unknown
NZ_AP019843.1\|WP_147004654.1\|21564_21786_-\|hypothetical-protein	unknown	unknown	unknown
NZ_AP019843.1\|WP_147004656.1\|24208_24622_+\|hypothetical-protein	unknown	unknown	unknown
NZ_AP019843.1\|WP_147004653.1\|20185_20593_-\|hypothetical-protein	unknown	unknown	unknown
NZ_AP019843.1\|WP_147004652.1\|18814_19285_+\|hypothetical-protein	unknown	unknown	unknown
NZ_AP019843.1\|WP_147004651.1\|17912_18296_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|133478
NZ_AP019843.1\|WP_172617509.1\|19899_20070_-\|hypothetical-protein	unknown	unknown	unknown
NZ_AP019843.1\|WP_060918244.1\|18475_18715_-\|hypothetical-protein	unknown	unknown	unknown
NZ_AP019843.1\|WP_172617511.1\|23732_23894_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_AP019843.1\|WP_147004651.1\|17912_18296_-\|hypothetical-protein	gnl\|CDD\|133478	cd07153, Fur_like, Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions. For example, PerR, a metal-dependent sensor of hydrogen peroxide. PerR regulates DNA-binding activity through metal-based protein oxidation, and co-ordinates Mn2+ or Fe2+ at its regulatory site. Fur family proteins contain an N-terminal winged-helix DNA-binding domain followed by a dimerization domain; this CD spans both those domains.	0.00485672
NZ_AP019843.1\|WP_147004650.1\|17149_17335_-\|hypothetical-protein	gnl\|CDD\|236153	PRK08116, PRK08116, hypothetical protein; Validated.	3.10584e-07
NZ_AP019843.1\|WP_147004661.1\|21208_21391_-\|ImmA/IrrE-family-metallo-endopeptidase	gnl\|CDD\|368753	pfam06114, Peptidase_M78, IrrE N-terminal-like domain. This entry includes the catalytic domain of the protein ImmA, which is a metallopeptidase containing an HEXXH zinc-binding motif from peptidase family M78. ImmA is encoded on a conjugative transposon. Conjugating bacteria are able to transfer conjugative transposons that can, for example, confer resistance to antibiotics. The transposon is integrated into the chromosome, but during conjugation excises itself and then moves to the recipient bacterium and re-integrate into its chromosome. Typically a conjugative tranposon encodes only the proteins required for this activity and the proteins that regulate it. During exponential growth, the ICEBs1 transposon of Bacillus subtilis is inactivated by the immunity repressor protein ImmR, which is encoded by the transposon and represses the genes for excision and transfer. Cleavage of ImmR relaxes repression and allows transfer of the transposon. ImmA has been shown to be essential for the cleavage of ImmR. This domain is also found in in metalloprotease IrrE, a central regulator of DNA damage repair in Deinococcaceae, HTH-type transcriptional regulators RamB and PrpC.	5.50793e-07
NZ_AP019843.1\|WP_147004657.1\|24926_25094_+\|hypothetical-protein	gnl\|CDD\|378216	pfam09588, YqaJ, YqaJ-like viral recombinase domain. This protein family is found in many different bacterial species but is of viral origin. The protein forms an oligomer and functions as a processive alkaline exonuclease that digests linear double-stranded DNA in a Mg(2+)-dependent reaction, It has a preference for 5'-phosphorylated DNA ends. It thus forms part of the two-component SynExo viral recombinase functional unit.	0.00306289

>NZ_AP019843.1|WP_147004654.1|21564_21786_-|hypothetical-protein
MKGISEILGLDVIEMYKLAGLLNENEDIRFAKLNKRERDQYSEIEKGSLLFNDNSISDEDKKRLHDSLQELFF
>NZ_AP019843.1|WP_147004661.1|21208_21391_-|ImmA/IrrE-family-metallo-endopeptidase
MKRKYIVINEKLDEYSKLVVLCHELGHAIYHSSKNKLLMKINFLIIIQSWKTKQMNLQQN
>NZ_AP019843.1|WP_147004653.1|20185_20593_-|hypothetical-protein
MGTQDDGVSVKEFKNLKLDKKDISITVNGTAVIKLSSKAAQTKNLKPKENPAKKEYTFSSGNYVVGKDIERGIYDVIAVKGNGNISSDNMFEGGINEVFGTSGDGFYVKEFKNAYFNDDVQLTVSGVTIKLVPSK
>NZ_AP019843.1|WP_172617509.1|19899_20070_-|hypothetical-protein
MKIDKYTQIRMKMIEKKIYWKDIMDKIGYSNWGLRLAIKNNNSEIIKKVEKIIDDF
>NZ_AP019843.1|WP_172617508.1|19435_19573_-|hypothetical-protein
MKDIIALIISMIIYHFSGKIKKIVMYSLPFAMLYLLIKSILYVTF
>NZ_AP019843.1|WP_147004652.1|18814_19285_+|hypothetical-protein
MPLPESLQKLLNNPNIQKMQLMMNYPSVQRMQQIFDNYPKINEFREKVYYSNLNIQMPIQIMDSQLQIIKNYSEVYSKTYNWNNIISSAIGAYNSTQEEEFEVVIENFPVIFLKPRLNEYIRIFQNLEIPENISVYLGFASYIFFGLHHMRHLFLL
>NZ_AP019843.1|WP_060918244.1|18475_18715_-|hypothetical-protein
MFKEFLEKCLRYENLYILEETGNREKIKRVSKRHGKVTGASILLFDSRTKRTTVNEIYFNSQGYFIIRDQKRLRLGKFN
>NZ_AP019843.1|WP_147004651.1|17912_18296_-|hypothetical-protein
MLYEAPAWAKEEIIENKTYYFVSRNLILDELPMFFEKSDTVYRNLKALQEKGLIEYIKQGKKDLIRITAKGKTWNEFKENNSEKNPSFEENSEKNPNNLGKNPKRVKNSEKIRQIIILYIIIIILIY
>NZ_AP019843.1|WP_147004650.1|17149_17335_-|hypothetical-protein
MSGNPGTGKTYYTTCIMNVLNQKYLVYKTTLSDLLEEIRKSYKSFENENDDFYSADYPKRN
>NZ_AP019843.1|WP_172617507.1|15376_15892_-|hypothetical-protein
MVIRLELPVYWNVNKKQQTLIGMNWYQRANGFQINEVKKAYHELIRLKLLSNKEKIKGSYQVRYKYFYKNDNSDLKNVTSVIDKFFNDALQELGIVKNDNVKYFKESIDRVGGMDKKNPRVEIEVEEIKNDKCRNIRFKKNGYKIFGENEKTCQGVLCGFWTREISEQGSI
>NZ_AP019843.1|WP_172617510.1|22848_22998_+|hypothetical-protein
MKFGALKIVNENSQKQEKKLKQRNLKQNQKLFNKKTAKATNFKSRLEIN
>NZ_AP019843.1|WP_147004655.1|23159_23339_+|hypothetical-protein
MELKGLTIISEYRGWDQKYGEPAFETKFFNKAGIELAYKEFLPVFSYEEFVGNDDWYIF
>NZ_AP019843.1|WP_172617511.1|23732_23894_+|hypothetical-protein
MIEKIKNDSEIDENIKKLMEQNLRYYVQKEYGIDAGFKSRRWKMRKNLIILEQ
>NZ_AP019843.1|WP_147004656.1|24208_24622_+|hypothetical-protein
MQKLQKLFQDSKITDKNLESGDTKIEKITEEQTLWCTFSLEDIIQRSFRALTRLINEFEFEDLHNPEQTVIKDFKNEFIIVHFRKMFEQELMEIKSKFKIYSKTRYNTTETALHQMFIIFAYYKIFKEKSNKESLAR
>NZ_AP019843.1|WP_147004657.1|24926_25094_+|hypothetical-protein
MGKNKYRNIIDVWKDKTGRIQNNFASPAAQRGKNLEKNIFNSYKETISIKNIRSQ
>NZ_AP019843.1|WP_147004658.1|25498_25723_+|hypothetical-protein
MEKIIETSLVALPKMEFVFDSEKITPAKIDKDMIDFEKAEQKVEEIEKLYNIVFTDVKDIKKYREEVASIKNKC
>NZ_AP019843.1|WP_147004659.1|25979_26414_+|hypothetical-protein
MQRQYDELIRKEDFIKQEIEKANKEIKFKIVFESMKYLIQEDYTVISKAINDKMNEIKQTEENLRIRAEEEKQREIAELERKRESEKQEAIARALQEKEQKETDNTQKKDTYTCVKVNGLSKEIALELKRFLDKNNIKYFKEMK
>NZ_AP019843.1|WP_147003772.1|27450_27645_+|hypothetical-protein
MIKYAEIHKIKIENETRYVAKMYVTYRDEMIDSFSSSYLEKVVEYLISKEYVISNYFDMTEMEG
>NZ_AP019843.1|WP_147004660.1|27652_27844_+|hypothetical-protein
MKLLLNVEEACSFLQMNERTLKSGLISGTLDIGSAIITKVINNKPRYKYHIPIKELKIYGNKL

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_AP019843_1	1.1\|22044\|42\|NZ_AP019843\|CRISPRCasFinder	22044-22085	42	NZ_AP019843	Leptotrichia wadei strain JMUB3936 plasmid pJMUB3934p2, complete sequence	22044-22085	0	1.0

1. spacer 1.1|22044|42|NZ_AP019843|CRISPRCasFinder matches to NZ_AP019843 (Leptotrichia wadei strain JMUB3936 plasmid pJMUB3934p2, complete sequence) position: , mismatch: 0, identity: 1.0

ttatgtggtataatagttttgtagaaaaaataaacatctata	CRISPR spacer
ttatgtggtataatagttttgtagaaaaaataaacatctata	Protospacer
******************************************

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site	Prophage annotation

Anti-CRISPR protein detection

Acr_ID: NZ_AP019843.1|WP_060918244.1|18475_18715_-|hypothetical-protein

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Acr ID

Acr position

Acr size

Homology with known anti

Neighbor HTH/AcRanker

Neighbor Aca

In prophage

Protospacer in prophage

NZ_AP019843.1|WP_060918244.1|18475_18715_-|hypothetical-protein

18475_18715_-

79 aa aa

hit_Aca_id	identity	query_coverage	hit_coverage
gnl\|BL_ORD_ID\|82	0.8461538461538461	1.0	0.9873417721518988

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_AP019841

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CRISPR-Cas detection and classification

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Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

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Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

2. NZ_AP019842

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CRISPR-Cas detection and classification

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

3. NZ_AP019843

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CRISPR-Cas detection and classification

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

Click the colored protein region to show detailed information