CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP017513	Mannheimia haemolytica strain 23533 chromosome, complete genome	3 crisprs	cas3,DEDDh,WYL,DinG,cas2,cas1,cas4,cas7,cas8c,cas5,PD-DExK,RT	1	5	7	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP017513_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP017513_1

1045530-1045604

Orphan

Consensus_repeat	Method
TTCTGGTGTCTGCCACCGCTAGG	CRISPRCasFinder

1 spacers

DinG

The CRISPR arrays of NZ_CP017513_1

>merge|NZ_CP017513|1|1045530-1045604|CRISPRCasFinder
TTCTGGTGTCTGCCACCGCTAGGTCTTTATACCCTAGATTAGTATCAGGTCTTTCTGGTGCCTGCCACCGCTAGG

>NZ_CP017513|1|1|1045530-1045604|CRISPRCasFinder
TTCTGGTGTCTGCCACCGCTAGG	TCTTTATACCCTAGATTAGTATCAGGTCT
TTCTGGTGCCTGCCACCGCTAGG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP017513.1\|WP_006250508.1\|1055347_1055569_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP017513.1\|WP_006253136.1\|1053529_1054462_+\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|226605
NZ_CP017513.1\|WP_006250509.1\|1054463_1055261_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224026
NZ_CP017513.1\|WP_006252259.1\|1039020_1043217_-\|autotransporter-domain-containing-protein	unknown	unknown	gnl\|CDD\|367071
NZ_CP017513.1\|WP_006252260.1\|1035689_1036730_-\|LLM-class-flavin-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|274646
NZ_CP017513.1\|WP_006249416.1\|1051554_1053288_-\|C4-dicarboxylic-acid-transporter-DauA	unknown	unknown	gnl\|CDD\|183265
NZ_CP017513.1\|WP_006248319.1\|1037871_1038966_+\|molybdenum-cofactor-guanylyltransferase	unknown	unknown	gnl\|CDD\|237727
NZ_CP017513.1\|WP_006250513.1\|1046961_1047165_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|213767
NZ_CP017513.1\|WP_006252261.1\|1035394_1035688_-\|YfcZ/YiiS-family-protein	unknown	unknown	gnl\|CDD\|367851
NZ_CP017513.1\|WP_006250186.1\|1057750_1058116_+\|CidA/LrgA-family-protein	unknown	unknown	gnl\|CDD\|234983
NZ_CP017513.1\|WP_006252258.1\|1043365_1044139_+\|D-hexose-6-phosphate-mutarotase	unknown	unknown	gnl\|CDD\|223748
NZ_CP017513.1\|WP_006250514.1\|1045720_1046962_-\|HipA-domain-containing-protein	unknown	unknown	gnl\|CDD\|377920
NZ_CP017513.1\|WP_006248320.1\|1037515_1037785_-\|DUF1040-family-protein	unknown	unknown	gnl\|CDD\|368826
NZ_CP017513.1\|WP_020824044.1\|1044292_1045333_+\|IS481-family-transposase	unknown	unknown	gnl\|CDD\|366234
NZ_CP017513.1\|WP_006252489.1\|1032353_1032911_+\|DUF2857-domain-containing-protein	unknown	unknown	gnl\|CDD\|378591
NZ_CP017513.1\|WP_020824046.1\|1048634_1051463_+\|excinuclease-ABC-subunit-UvrA	unknown	unknown	gnl\|CDD\|234734
NZ_CP017513.1\|WP_020824074.1\|1034163_1035204_-\|IS481-family-transposase	unknown	unknown	gnl\|CDD\|366234
NZ_CP017513.1\|WP_006253491.1\|1047964_1048480_-\|single-stranded-DNA-binding-protein	unknown	unknown	gnl\|CDD\|136097
NZ_CP017513.1\|WP_006248321.1\|1036813_1037452_-\|thioredoxin-domain-containing-protein	unknown	unknown	gnl\|CDD\|182863
NZ_CP017513.1\|WP_006250506.1\|1055751_1057677_+\|ATP-dependent-DNA-helicase	DinG	COG1199_DinG_CAS-IV-A	gnl\|CDD\|224120

Protein	Function_ID	Function_description	E-value
NZ_CP017513.1\|WP_006253136.1\|1053529_1054462_+\|ABC-transporter-permease	gnl\|CDD\|226605	COG4120, COG4120, ABC-type uncharacterized transport system, permease component [General function prediction only].	1.63801e-98
NZ_CP017513.1\|WP_006250509.1\|1054463_1055261_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224026	COG1101, PhnK, ABC-type uncharacterized transport system, ATPase component [General function prediction only].	2.67049e-138
NZ_CP017513.1\|WP_006252259.1\|1039020_1043217_-\|autotransporter-domain-containing-protein	gnl\|CDD\|367071	pfam02395, Peptidase_S6, Immunoglobulin A1 protease. This family consists of immunoglobulin A1 protease proteins. The immunoglobulin A1 protease cleaves immunoglobulin IgA and is found in pathogenic bacteria such as Neisseria gonorrhoeae. Not all of the members of this family are IgA proteases, EspP from E. coli O157:H7 cleaves human coagulation factor V and hbp is a hemoglobin protease from E. coli EB1.	0
NZ_CP017513.1\|WP_006252260.1\|1035689_1036730_-\|LLM-class-flavin-dependent-oxidoreductase	gnl\|CDD\|274646	TIGR03558, oxido_grp_1, luciferase family oxidoreductase, group 1. The Pfam domain family pfam00296 is named for luciferase-like monooxygenases, but the family also contains several coenzyme F420-dependent enzymes. This protein family represents a well-resolved clade within family pfam00296 and shows no restriction to coenzyme F420-positive species, unlike some other clades within pfam00296. [Unknown function, Enzymes of unknown specificity].	1.11109e-154
NZ_CP017513.1\|WP_006249416.1\|1051554_1053288_-\|C4-dicarboxylic-acid-transporter-DauA	gnl\|CDD\|183265	PRK11660, PRK11660, putative transporter; Provisional.	0
NZ_CP017513.1\|WP_006248319.1\|1037871_1038966_+\|molybdenum-cofactor-guanylyltransferase	gnl\|CDD\|237727	PRK14489, PRK14489, putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobA/MobB; Provisional.	0
NZ_CP017513.1\|WP_006250513.1\|1046961_1047165_-\|hypothetical-protein	gnl\|CDD\|213767	TIGR03070, couple_hipB, transcriptional regulator, y4mF family. Members of this family belong to a clade of helix-turn-helix DNA-binding proteins, among the larger family pfam01381 (HTH_3; Helix-turn-helix). Members are similar in sequence to the HipB protein of E. coli. Genes for members of the seed alignment for this protein family were found to be closely linked to genes encoding proteins related to HipA. The HibBA operon appears to have some features in common with toxin-antitoxin post-segregational killing systems. [Regulatory functions, DNA interactions].	0.00480946
NZ_CP017513.1\|WP_006252261.1\|1035394_1035688_-\|YfcZ/YiiS-family-protein	gnl\|CDD\|367851	pfam04175, DUF406, Protein of unknown function (DUF406). Members of this family appear to be found only in gamma proteobacteria. The function of this protein family is undetermined. Solution of the structures of the two members of this family investigated bear some resemblance to that of the single domain enzyme pterin-4a-carbinolamine dehydratase, PDC. Although the residues of PCDs involved in binding of metabolite are not conserved in the two structures under study, they do correspond to a surface-region structurally aligned with residues that are highly conserved, eg Glu 89, suggesting that this region is also involved in binding of a ligand, thereby possibly constituting a catalytic site of a yet uncharacterized enzyme specific for gamma proteobacteria.	7.66966e-31
NZ_CP017513.1\|WP_006250186.1\|1057750_1058116_+\|CidA/LrgA-family-protein	gnl\|CDD\|234983	PRK01821, PRK01821, hypothetical protein; Provisional.	3.61345e-25
NZ_CP017513.1\|WP_006252258.1\|1043365_1044139_+\|D-hexose-6-phosphate-mutarotase	gnl\|CDD\|223748	COG0676, COG0676, Uncharacterized enzymes related to aldose 1-epimerase [Carbohydrate transport and metabolism].	2.73894e-101
NZ_CP017513.1\|WP_006250514.1\|1045720_1046962_-\|HipA-domain-containing-protein	gnl\|CDD\|377920	pfam07804, HipA_C, HipA-like C-terminal domain. The members of this family are similar to a region close to the C-terminus of the HipA protein expressed by various bacterial species. This protein is known to be involved in high-frequency persistence to the lethal effects of inhibition of either DNA or peptidoglycan synthesis. When expressed alone, it is toxic to bacterial cells, but it is usually tightly associated with HipB, and the HipA-HipB complex may be involved in autoregulation of the hip operon. The hip proteins may be involved in cell division control and may interact with cell division genes or their products.	5.96698e-62
NZ_CP017513.1\|WP_006248320.1\|1037515_1037785_-\|DUF1040-family-protein	gnl\|CDD\|368826	pfam06288, DUF1040, Protein of unknown function (DUF1040). This family consists of several bacterial YihD proteins of unknown function.	8.73032e-44
NZ_CP017513.1\|WP_020824044.1\|1044292_1045333_+\|IS481-family-transposase	gnl\|CDD\|366234	pfam00665, rve, Integrase core domain. Integrase mediates integration of a DNA copy of the viral genome into the host chromosome. Integrase is composed of three domains. The amino-terminal domain is a zinc binding domain pfam02022. This domain is the central catalytic domain. The carboxyl terminal domain that is a non-specific DNA binding domain pfam00552. The catalytic domain acts as an endonuclease when two nucleotides are removed from the 3' ends of the blunt-ended viral DNA made by reverse transcription. This domain also catalyzes the DNA strand transfer reaction of the 3' ends of the viral DNA to the 5' ends of the integration site.	2.23372e-24
NZ_CP017513.1\|WP_006252489.1\|1032353_1032911_+\|DUF2857-domain-containing-protein	gnl\|CDD\|378591	pfam11198, DUF2857, Protein of unknown function (DUF2857). This is a bacterial family of uncharacterized proteins.	2.15508e-72
NZ_CP017513.1\|WP_020824046.1\|1048634_1051463_+\|excinuclease-ABC-subunit-UvrA	gnl\|CDD\|234734	PRK00349, uvrA, excinuclease ABC subunit UvrA.	0
NZ_CP017513.1\|WP_020824074.1\|1034163_1035204_-\|IS481-family-transposase	gnl\|CDD\|366234	pfam00665, rve, Integrase core domain. Integrase mediates integration of a DNA copy of the viral genome into the host chromosome. Integrase is composed of three domains. The amino-terminal domain is a zinc binding domain pfam02022. This domain is the central catalytic domain. The carboxyl terminal domain that is a non-specific DNA binding domain pfam00552. The catalytic domain acts as an endonuclease when two nucleotides are removed from the 3' ends of the blunt-ended viral DNA made by reverse transcription. This domain also catalyzes the DNA strand transfer reaction of the 3' ends of the viral DNA to the 5' ends of the integration site.	2.18245e-24
NZ_CP017513.1\|WP_006253491.1\|1047964_1048480_-\|single-stranded-DNA-binding-protein	gnl\|CDD\|136097	PRK06863, PRK06863, single-stranded DNA-binding protein; Provisional.	2.51083e-99
NZ_CP017513.1\|WP_006248321.1\|1036813_1037452_-\|thioredoxin-domain-containing-protein	gnl\|CDD\|182863	PRK10954, PRK10954, thiol:disulfide interchange protein DsbA.	7.23879e-76
NZ_CP017513.1\|WP_006250506.1\|1055751_1057677_+\|ATP-dependent-DNA-helicase	gnl\|CDD\|224120	COG1199, DinG, Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair].	0

>NZ_CP017513.1|WP_020824044.1|1044292_1045333_+|IS481-family-transposase
MFYSNNPLIKHKTGLLNLAEELGNISQACKVMGMSRDTFYRYQQAVEQGGVEALLNQNRRVPNLKNRVDEAIEQAVVKFALDNPAFGQVRVSNELRKQGIFVSAGGVRSIWLRHHLANFKQRLIALEKLVAEQGIILSETQVQALERKKEDEIACGEIETTHPGYLGSQDTFYVGNLKGVGRIYQQTFIDTYSKVAFAKLYTMKTAISAADMLNDKVLPYFESQGLPMLRILTDRGSEYCGKVENHDYELYLAINDIEHSKTKVKHPQTNGICERFHKTILQEFYQVAFRKKIYTDLTTLQADLDEWLMYYNHHRTHQGKMCCGRTPMATLLDGKRIWVEKNLSSN
>NZ_CP017513.1|WP_006252258.1|1043365_1044139_+|D-hexose-6-phosphate-mutarotase
MNLSNALKLIKYNELDVLEVNHNKFKAKIALQGAQLLSWQPYNAEQDVLWLSEIEPFRIGSAIRGGIPICYPWFGSIKEPAHGTARIQEWRLVEHTCSDENVGLVFALENKAKMEMMLGETCELYFTHLDPEPAQLALHSYFNIGDIEKVEVQGLPTRCFDKLTDQEVEVPSPRKISENVDCIYPAQAVNFIQDFANQRTIKVEHINATETVLWNPWHNTVSAMTETAYQNMVCVETARINTLLQQNETLGVRVLVR
>NZ_CP017513.1|WP_006252259.1|1039020_1043217_-|autotransporter-domain-containing-protein
MKTKTFTRSYLASFVTIVLSLPAVASVVRNDVDYQYFRDFAENKGPFSVGSMNIDIKDNNGQLVGTMLHNLPMVDFSAMVRGGYSTLIAPQYLVSVAHNTGYKNVQFGAAGYNPDSHHYTYKIVDRNDYEKVQGGLHPDYHTPRLNKLVTEVVPAAVTNAGTSIKPYLNEERFPMFLRAGSGTQALRGKESNKTTGIAGAYEYLTGGTTLQLSKSSPDHWLDYSSNLYQVSYGPLSTYALPGDSGSGSYAYDMNEKRWVLVGVLNFYNGMDNQFNRSAIIRKDFHEKKFAEDIAGTINNTVQNAQFNWTAQGKSSSLSQSNNVQKLNVDLKDSSIANQNTSLPQENHGKTINFNGKDATIVLKQDIDQGAGALNLNANLTIRPETDQTWQGAGIIVGKDKKVNWQVKNPQGDRLSKLGEGTLYVNGRGQNLGDISVGDGIVILNQQADHQGRKQAFNTVGIVSGRPTVVLGSADQVNPDNIYFGFRGGRLDLNGNSIAFKRIQNSDKHARIVNHNRDHISTLIIQGQDPLTSNDLIWGKWASNSPADIYEYTNPYQNKRKDYFRLKGNSRVYYPTNATSNDHWEFLSSNREQAIQKILDAKNLRQRYDTFNGFIGEDASNKTNGILNVVFDTKTEVNTEQDKLKNIYTMSGGFNLNGELTLKGGTLLLSGHPTPHAYDIKNKHDVVRENDWQDSHFTAKNITVNKMAQLYIGRNVNEVNSHFTATDKAKLNLGFINRSTPSCYDSEYTGTTHCEVQAVISDNIFANLATTAIKGNVKLQNHSQLNLGKANLTGSVQADQTTHITLANHSHWLNNGTSQIGHLTMEKGSILSLNDKFATTEIPVRFNKMIIQGNLKGNGRINYTANLAKGESDHLQVDGIAEGNFVLAVRNSTTEANPKSSLNLLSLKNSNQEGNKVSISLENNYVDLGTYRYVLENRNHNYHLFNPLIPNSTSKEMNATSVSSIPKKESVTNVPTLDKKETEQNLTQLQKDFSAHQLENQKAKQSMINAQSELRRLNSQLNVLQKYVNSRRLGYYTQQAVLEQISIIQNKIKQTQTIFNDANATVKLTDQKLEEAKLALGSVNDLVLIKASAPAMQATNQDTSMMNIIQADWISQYANTALSELSAQANSALQISNSLDRQLFKQSDKFNVWSSVEHQKTEHKSDLYRPYKQQTNLTQLGIQMPIDNGLMFGVALSKNHANAEFNEGVNGKSNLLMASLYGKWQSQQGTFISLDGSYGKAKNQLYLFGENHFTRRISSIGANIGHQFDLAGVQIQPTIGARYYHFSGQDYTLGGAKISSPNTHFMTYQAGLKASKTFSLDDWKVEPSITTHYVDASNKRLAVNVNNNNINQRFGRYLKTEAGIRFEHNQWQFDLHAGFINGNEIKKQHFAGVKLGYSW
>NZ_CP017513.1|WP_006248319.1|1037871_1038966_+|molybdenum-cofactor-guanylyltransferase
MSKTIEERISAVILAGGLARRMNGVEKGLQLFEGKPLISHILARLSPQVSDIWLNVNRSIEQYQQLYPAFSYYQDSLPDFQGPLSGMLAGFEQIESDYLLFVPCDTPFMPELLLQKLKTALRINNVQIAYAHDGERPHPTFALIHRSVQEDLKAYLGSNQQQLLAFFQSQKSVAVDFSEQKSAFTNVNTLEDLSRVSQFPVKNLAITGYSGTGKTTLLEKLIPKLTACGIRVGLIKHSHHNVDVDKKGKDSYRLREAGANPTMIVCDERWALMTETKQAVEFSQLIAKFNPQEVDLVFVEGFKHETLPKIQLHRKGIEKPLPELDQWTIATATDYPLERENWLDINNIGGIADFIKNWLENKAS
>NZ_CP017513.1|WP_006248320.1|1037515_1037785_-|DUF1040-family-protein
MKCERLEELLELLGEHWRKNPDLHLIDILQQLSVEVGEPDNFKALSDEVLIYQLKMRNAGKFEPIPGIKKDYEDDFKTALLRARGILND
>NZ_CP017513.1|WP_006248321.1|1036813_1037452_-|thioredoxin-domain-containing-protein
MKKLALKTAFVALSALFTFNSTAIAADPTAGKEYIEVRKAPSAQKEVVEFFSFYCPHCYDFELSYKIPSQIKEKLPSDSKLVQYHVNFLGRQSEDLTRAWALAMALGAEDKVKTALFEGAQKDAFKSMDDIRSVFLANGITAEQFDSGINSFAVNGLVNKQVQLAEDFQIRGVPAFFVNGQYQLNLEGFADSSSTNDFIKRYVDAVVFLSKK
>NZ_CP017513.1|WP_006252260.1|1035689_1036730_-|LLM-class-flavin-dependent-oxidoreductase
MTKLSILNLVPIREGQTAKQAVDSMVKLAKHAESIGIERYWIAEHHNMKNLASSATQLLIQHALSHTEKLRVGSGGVMLPNHSPYIVAEQYGTLETLYPNRVELGLGRAPGTDMRTATALRRNAQSLPFPDEISELKGYFEGTNPVSAYPAQGLNVPFYILGSSPESAYLAAERGLPYAFASHFAPRFMDDAVRIYRTHFKPSEVLDKPYVILGVNAIAAETDQEAEQLATTQTQFFLNVVTNAQNYLQPPVESDDKVWENFVKAEIVPHFGPVSFQQNALYNQEKTVVRQMTACSLIGSRESVEQQLKSLKARIEIDEIMAVSYIFDEQKQHQSYTWLKEIADKV
>NZ_CP017513.1|WP_006252261.1|1035394_1035688_-|YfcZ/YiiS-family-protein
MSKTMQQKAADAHNMCKLKGDSMLDNSDRQIAFEAVYDSEEIAVQAVEFFTQKAKSVETEPCDIQSEITPIIDGFLMKMWITFSCQAEVILFQMAVR
>NZ_CP017513.1|WP_020824074.1|1034163_1035204_-|IS481-family-transposase
MFYSNNPLIKHKTGLLNLAEELGNISQACKVMGMSRDTFYRYQQAVEQGGVEALLNQNRRVPNLKNRVDEAIEQAVVKFALDNPAFGQVRVSNELRKQGIFVSAGGVRSIWLRHHLANFKQRLIALEKLVAEQGIILSETQVQALERKKEDEIACGEIETAHPGYLGSQDTFYVGNLKGVGRIYQQTFIDTYSKVAFAKLYTMKTAISAADMLNDKVLPYFESQGLPMLRILTDRGSEYCGKVENHDYELYLAINDIEHSKTKVKHPQTNGICERFHKTILQEFYQVAFRKKIYTDLTTLQADLDEWLMYYNHHRTHQGKMCCGRTPMATLLDGKRIWVEKNLSSN
>NZ_CP017513.1|WP_006252489.1|1032353_1032911_+|DUF2857-domain-containing-protein
MIKTITVNEALIGNALLNIKEGNIHPCLKMGFSEEQLKAINNLSLDEIMDISNSVVSFAKVEINHETFWKLLAIAQANTQQRQIIDRALLLGASIEMLHQYFGLSTSEVSARRQLLGIEEKMGRKAAASDEESTHIWEIWQKYKQKMESLDSQEGLELLCLIAEEGNMNLTVVWKLVSEWQSKHK
>NZ_CP017513.1|WP_006250514.1|1045720_1046962_-|HipA-domain-containing-protein
MMNKRIYVFADWETFSQPELVGVLSSDVVRGKENFRFSYDNEWLSSPYVQQIDPNLYLYPGEQYSTDTQNFHIFLDSCPDRWGRLLMKRREAALASQENRKPKLLIESDYLLGVHDMNRMGALRFKTELNGPFLDNNTRLAAPPLSSLRELEFAAIQLESSDNVDDPDYLKWLHMLISPGSSLGGARPKASVIDELNQLWIAKFPSRYDDYDIALWEYLAYRLAIQAKIEMATCRIERFNQEHHTFLTQRFDRHCGKRRHFTSALTQLGYYDGDYEASYLEIAQFLTESGSNTRIDLAQLWRRIVFNIAISNTDDHLRNHGFIYAQEGWILSPAYDLNPVPLSQGLHLNITDSDNRLDYQLAFDVADFFQLSKQQAVQIYDEVLKEVNNWQNVAKEIGIPRQEQEQMKFAFNV
>NZ_CP017513.1|WP_006250513.1|1046961_1047165_-|hypothetical-protein
MFTQTLLAQRTGLSRVTVRKIMNGDPTVAIGYYLMVLGVLGLEQDFTDVGKDDELGRKLQDIELLRK
>NZ_CP017513.1|WP_006253491.1|1047964_1048480_-|single-stranded-DNA-binding-protein
MAGINKVIIVGNLGNDPEMRTMPNGEAVANISVATSESWTDKNTGERREVTEWHRIVFYRRQAEVCGQYLRKGSQVYVEGRLKTRKWQDQNGQDRYTTEIQGDVLQMLGSRQGNDMGGQQGGWGNSAPAGNSYNQGNSNYGYNQTQSAAPQSKPAPQPEPAMNNFDDDIPF
>NZ_CP017513.1|WP_020824046.1|1048634_1051463_+|excinuclease-ABC-subunit-UvrA
MQHIDIRGARTHNLKNINLTLPRDKFIVITGLSGSGKSSLAFDTLYAEGQRRYVESLSAYARQFLSLMEKPDVDHIEGLSPAISIEQKSTSHNPRSTVGTVTEIHDYLRLLFARVGEPRCPDHDVPLAAQTISQMVDRVLEEPEGKRMMLLAPVVKERKGEHVKLLENLTASGYLRARIDGEICDLSDPPALELQKKHTIEVVVDRFKVRADLATRLAESFETALDLSGSTAIIADMDDPNAEEIVFSSSFACPHCGYSLHELEPRLFSFNNPAGACPTCDGLGVEQFFDAKKVVQNEEVSLAAGAIKGWDRRSFYYFGLLKAVAEHYGFDLETPFGQLPKKYQNIILNGTKEEIEFVYVNDRGDKVKRKHAFEGVLNNMARRYKETESNAVREELAKYINNRPCMDCEGSRLRREARYVFLDKTNLPMVSEKSIGEALTFFEELKLAGQKEKIAEKILKEIRERLQFLVNVGLNYLSLSRSAETLSGGEAQRIRLASQIGAGLVGVMYVLDEPSIGLHQRDNERLLNTLVHLRNLGNTVIVVEHDEDAIRAADHIVDIGPGAGVHGGQVIAQGTAAEIMQIEESITGQFLSGKQKIEIPAQRVPYEPTKLLTLSGASGNNLKKVKLEIPVGLFTCITGVSGSGKSTLVNDTLFLLAQNALNRAENSDVAPYESIDGLSHFDKVIDIDQSPIGRTPRSNPATYTGLFTPIRELFAGTQEARARGYNVGRFSFNVRGGRCEACQGDGVIKVEMHFLPDVYVPCDHCKGKRYNRETLEIRYKGKTIHQVLEMTVEEAREFFAPVPMIARKLQTLMDVGLSYIRLGQSSTTLSGGEAQRVKLATELSKRDTGKTLYILDEPTTGLHFADIKQLLGVLHRLRDQGNTIVVIEHNLDVIKTADWIVDLGPEGGSGGGEIIATGTPEEVAKDKRSHTARFLKEILAKG
>NZ_CP017513.1|WP_006249416.1|1051554_1053288_-|C4-dicarboxylic-acid-transporter-DauA
MLNKWFLTKNAFLAVKPFSALKDALNAGYGKQHLIRDIISGLTVGVIAIPLSMALAIASGVPPQHGLYTAIVAGIVIALTGGSRFNISGPTAAFVVILYPVTQQFGLSGLLMATMLSGGILVLMALLRLGRLIEYIPLPVTLGFTCGIGIVIATLQIKDFLGLSIEKMPEHYLGKLEAIFSALPTINWADTLVGVVTLLVLTRWHKLRLPIPGHLPAVFIGTLLSLLLIHFGQNVATIGSAFHYTLSDGTTGYGIPSVLPEFVLPWNLPNAEGNRIDWNLTTIQALLPAAFSMAMLGAIESLLCAVVCDNMTDTKHHSNNELLAQGLGNIASPFLGGITATAAIARSAANVRSGAVSPISSVVHALLVLFALLFLAKALSYLPLSSMAALLLVVAWNMADIPQIIQLTRRSGKNEIAVLLTCITLTVLFDMVIAITVGVLLASLLFIRTIAEMTKSFEMAHPTDLNDVLVYRISGPLFFAAADNLFADLHNKTVHTDHQIKHIVLQCDAVTVLDAGGIHALTRFVQHMLPHQQLHLCNVQFQPMRMLVRSQKTVNEIPQIQFSSDLESAFDKIRQAN
>NZ_CP017513.1|WP_006253136.1|1053529_1054462_+|ABC-transporter-permease
MDSLIHFLSAFLTNITWIGALELGLIYSLVALGVLISYKILDFPDLTADGSFPLGGAVCVISILNQVDPWLATLYGTLAGAVAGMVTASLHIGFKIEKLLASILMMIALYSINLRIMGMPNIAILGETTIYDVMPIESDLQLALVRLVMTLLVVIIVKGLFDLFFATEIGLAVRATGTNSRMAKAQGIAINKMTILGMAISNALIALGGALYVQSNGGVDISIGVGTIVIGLAAVIIGEAIFSVKRIIWLTFAVIIGSILYRFFIALALNNETLNGIGFGPQDLNLITALLVVIVLVVPRIKHKLLGKRG
>NZ_CP017513.1|WP_006250509.1|1054463_1055261_+|ABC-transporter-ATP-binding-protein
MIELNNLFITFNKGTAIENPVLRGLSLKVEQGEFVSVIGSNGAGKSTLLNAISGDCAVDSGEILIQGNKVNQSTTWQRANQVARVFQDPMAGTCESLTIEENMALAYQRGRKRGLGFAIKRQMRELFKDKLALLGLGLENRLTDQMGRLSGGQRQAVSLLMASLQPSNVLLLDEHTAALDPKTTDFVLELTNKIVREQKLTTLMVTHSMRQALDYGDRTVMLHQGQVAFDVSGEQRQKMDVPDLLQLFQQSRHEQLSDDGLLLGN
>NZ_CP017513.1|WP_006250508.1|1055347_1055569_+|hypothetical-protein
MLSIFKTPVEKETLDDWAKISVDVAKVAILAIPVILFGKEPTLIKLTNLALLVLSIYVFLTLGRKLRQLKEVL
>NZ_CP017513.1|WP_006250506.1|1055751_1057677_+|ATP-dependent-DNA-helicase
MTKYDDKIQHAFSENGLLSQNISGFRPRQAQLEMAQVVAKAVKFATPVVVEAGTGTGKTFAYLVPALLSGKKTILSTGSKNLQDQLFNRDLPTIQKALKYKGKIALLKGRANYLCLERLDQVTAMGVLGDKSVLTDLKKVSKWQNATKTGDLSECITIAEDSPILPQLVSTTESCLGSDCPHFKDCYVVQARRKAMEADVVVVNHHLFCADMAVKETGFGELIPEAELVIFDEAHQLPDIASQYFGQSLSSRQLFDICKDTNIVYRTELKDLSQLGKAADHLTKVVQDFRLLMGGEGQIRGNLRELFRDKKVVDGLVKVAENIDFLSEVAKKSLGRSEMLDKIFERLAEVKVQLKKLMDTSVTGYCYWYEANGRSFGLHITPLMVADKFGEQLKNQQIGWVFTSATLEVGGKFDHFCQRLGIENAEQLVLQSPFDYQHQSLLCVPRYLPDTNKSNTLTALGQLLKPVIEANKGRCFLLCTSYYMMRGLADFLREHSSLNVLLQGETSKSRLLEKFVKEDHSVLVATQSFWEGIDVRGDDLSLVIIDKLPFTSPDEPLLKARMEDCKIQGGDPFNDIQIPEAVITLKQGVGRLIRDVTDRGVVIICDSRLVMRNYGQTFLKSLPPSRRTRDLGNVIQFLKQK
>NZ_CP017513.1|WP_006250186.1|1057750_1058116_+|CidA/LrgA-family-protein
MLSTLLRMVASLALLFVMLYLGKLIVYLFPIGIPDSILGMLILFGCLVIGIVKVEWVIPSAKPLTRYITLFFLPICVELIEHLELLRQNLNTFVLATALSTLVSVVAIGVFAQWIFHYKRG

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Crispr_ID: NZ_CP017513_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP017513_2

1498252-1498615

TypeI

Consensus_repeat	Method
GTTTCAATTCACAGCCACGCGTAGGTGGCTGC	PILER-CR
GTTTCAATTCACAGCCACGCGTAGGTGGCTGC	CRISPRCasFinder
GTTTCAATTCACAGCCACGCGTAGGTGGCTGC	CRT

5 spacers

cas2,cas1,cas4,cas7,cas8c,cas5,cas3

The CRISPR arrays of NZ_CP017513_2

>merge|NZ_CP017513|2|1498252-1498615|PILER-CR,CRISPRCasFinder,CRT
GTTTCAATACACAGCCACGCGTAGGTGGCTGCAATTGCCTGTACATCAACATAACCACAAACACGGAGTTTCAATTCACAGCCACGCGTAGGTGGCTGCTCGAAAATCTTCCACGCATTTACGCCGATGTCAGTGTTTCAATTCACAGCCACGCGTAGGTGGCTGCGTTTCAGCACTTGCTCGTCTGTCTAGATGTAAGCGTTTCAATTCACAGCCACGCGTAGGTGGCTGCTAATGCAATGCAGCGAGGGCGAAGAGCTTATCCCTGTTTCAATTCACAGCCACGCGTAGGTGGCTGCACGAATTTACCCCCGAAATGGCCGCCTTGATTGGTTTCAATTCACAGCCACGCGTAGGTGGCTGC

>NZ_CP017513|2|1|1498252-1498615|PILER-CR
GTTTCAATACACAGCCACGCGTAGGTGGCTGC	AATTGCCTGTACATCAACATAACCACAAACACGGA
GTTTCAATTCACAGCCACGCGTAGGTGGCTGC	TCGAAAATCTTCCACGCATTTACGCCGATGTCAGT
GTTTCAATTCACAGCCACGCGTAGGTGGCTGC	GTTTCAGCACTTGCTCGTCTGTCTAGATGTAAGC
GTTTCAATTCACAGCCACGCGTAGGTGGCTGC	TAATGCAATGCAGCGAGGGCGAAGAGCTTATCCCT
GTTTCAATTCACAGCCACGCGTAGGTGGCTGC	ACGAATTTACCCCCGAAATGGCCGCCTTGATTG
GTTTCAATTCACAGCCACGCGTAGGTGGCTGC

>NZ_CP017513|2|2|1498252-1498615|CRISPRCasFinder
GTTTCAATACACAGCCACGCGTAGGTGGCTGC	AATTGCCTGTACATCAACATAACCACAAACACGGA
GTTTCAATTCACAGCCACGCGTAGGTGGCTGC	TCGAAAATCTTCCACGCATTTACGCCGATGTCAGT
GTTTCAATTCACAGCCACGCGTAGGTGGCTGC	GTTTCAGCACTTGCTCGTCTGTCTAGATGTAAGC
GTTTCAATTCACAGCCACGCGTAGGTGGCTGC	TAATGCAATGCAGCGAGGGCGAAGAGCTTATCCCT
GTTTCAATTCACAGCCACGCGTAGGTGGCTGC	ACGAATTTACCCCCGAAATGGCCGCCTTGATTG
GTTTCAATTCACAGCCACGCGTAGGTGGCTGC

>NZ_CP017513|2|1|1498252-1498615|CRT
GTTTCAATACACAGCCACGCGTAGGTGGCTGC	AATTGCCTGTACATCAACATAACCACAAACACGGA
GTTTCAATTCACAGCCACGCGTAGGTGGCTGC	TCGAAAATCTTCCACGCATTTACGCCGATGTCAGT
GTTTCAATTCACAGCCACGCGTAGGTGGCTGC	GTTTCAGCACTTGCTCGTCTGTCTAGATGTAAGC
GTTTCAATTCACAGCCACGCGTAGGTGGCTGC	TAATGCAATGCAGCGAGGGCGAAGAGCTTATCCCT
GTTTCAATTCACAGCCACGCGTAGGTGGCTGC	ACGAATTTACCCCCGAAATGGCCGCCTTGATTG
GTTTCAATTCACAGCCACGCGTAGGTGGCTGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP017513.1\|WP_006248114.1\|1498804_1499098_-\|CRISPR-associated-endonuclease-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|187856
NZ_CP017513.1\|WP_006250677.1\|1492768_1493452_-\|DUF218-domain-containing-protein	unknown	unknown	gnl\|CDD\|225500
NZ_CP017513.1\|WP_006248107.1\|1504396_1505074_-\|type-I-C-CRISPR-associated-protein-Cas5	cas5	cd09752_cas5_CAS-I-C	gnl\|CDD\|187534
NZ_CP017513.1\|WP_006248118.1\|1496526_1498002_-\|ribonuclease-G	unknown	unknown	gnl\|CDD\|183285
NZ_CP017513.1\|WP_020824138.1\|1486455_1487262_-\|tryptophan-synthase-subunit-alpha	unknown	unknown	gnl\|CDD\|161792
NZ_CP017513.1\|WP_006250678.1\|1491412_1491823_+\|H-NS-histone-family-protein	unknown	unknown	gnl\|CDD\|182380
NZ_CP017513.1\|WP_006250676.1\|1494870_1496373_-\|lysine--tRNA-ligase	unknown	unknown	gnl\|CDD\|234778
NZ_CP017513.1\|WP_006250669.1\|1505311_1507063_-\|DUF87-domain-containing-protein	unknown	unknown	gnl\|CDD\|223510
NZ_CP017513.1\|WP_006248812.1\|1493719_1494793_+\|homoserine-O-acetyltransferase	unknown	unknown	gnl\|CDD\|234678
NZ_CP017513.1\|WP_020824140.1\|1507052_1508108_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|238697
NZ_CP017513.1\|WP_006250671.1\|1501742_1502606_-\|type-I-C-CRISPR-associated-protein-Cas7/Csd2	cas7	cd09689_cas7_CAS-I-C	gnl\|CDD\|377458
NZ_CP017513.1\|WP_006250672.1\|1501077_1501743_-\|CRISPR-associated-protein-Cas4	cas4	cd09637_cas4_CAS-I:CAS-II:CAS-V	gnl\|CDD\|273040
NZ_CP017513.1\|WP_006250670.1\|1502615_1504400_-\|type-I-C-CRISPR-associated-protein-Cas8c/Csd1	cas8c	cd09757_cas8c_CAS-I-C	gnl\|CDD\|187887
NZ_CP017513.1\|WP_006250680.1\|1488465_1489218_-\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|187604
NZ_CP017513.1\|WP_006250674.1\|1499164_1500178_-\|type-I-C-CRISPR-associated-endonuclease-Cas1	cas1	cd09721_cas1_CAS-I-C	gnl\|CDD\|188360
NZ_CP017513.1\|WP_006250679.1\|1489443_1490976_-\|Na+/H+-antiporter-NhaC-family-protein	unknown	unknown	gnl\|CDD\|224671
NZ_CP017513.1\|WP_006248815.1\|1491892_1492732_+\|formyltetrahydrofolate-deformylase	unknown	unknown	gnl\|CDD\|235676
NZ_CP017513.1\|WP_006250667.1\|1508238_1510527_-\|CRISPR-associated-helicase/endonuclease-Cas3	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|350688
NZ_CP017513.1\|WP_006250681.1\|1487263_1488454_-\|tryptophan-synthase-subunit-beta	unknown	unknown	gnl\|CDD\|235288
NZ_CP017513.1\|WP_006250673.1\|1500295_1500976_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP017513.1\|WP_006248114.1\|1498804_1499098_-\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|187856	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas2 is present in majority of CRISPR/Cas systems along with Cas1; RNAse specific to U-rich regions; Possesses an RRM/ferredoxin fold.	8.20021e-33
NZ_CP017513.1\|WP_006250677.1\|1492768_1493452_-\|DUF218-domain-containing-protein	gnl\|CDD\|225500	COG2949, SanA, Uncharacterized membrane protein [Function unknown].	3.48782e-75
NZ_CP017513.1\|WP_006248107.1\|1504396_1505074_-\|type-I-C-CRISPR-associated-protein-Cas5	gnl\|CDD\|187534	cd09752, Cas5_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas5 is a RAMP superfamily protein; Subunit of the Cascade complex; in subtype I-C this protein might be the endoribonuclease that generates crRNAs; also known as DevS family.	2.38632e-113
NZ_CP017513.1\|WP_006248118.1\|1496526_1498002_-\|ribonuclease-G	gnl\|CDD\|183285	PRK11712, PRK11712, ribonuclease G; Provisional.	0
NZ_CP017513.1\|WP_020824138.1\|1486455_1487262_-\|tryptophan-synthase-subunit-alpha	gnl\|CDD\|161792	TIGR00262, Tryptophan_synthase_alpha_chain, tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences. [Amino acid biosynthesis, Aromatic amino acid family].	2.62732e-123
NZ_CP017513.1\|WP_006250678.1\|1491412_1491823_+\|H-NS-histone-family-protein	gnl\|CDD\|182380	PRK10328, PRK10328, DNA-binding protein StpA.	1.90925e-33
NZ_CP017513.1\|WP_006250676.1\|1494870_1496373_-\|lysine--tRNA-ligase	gnl\|CDD\|234778	PRK00484, lysS, lysyl-tRNA synthetase; Reviewed.	0
NZ_CP017513.1\|WP_006248812.1\|1493719_1494793_+\|homoserine-O-acetyltransferase	gnl\|CDD\|234678	PRK00175, metX, homoserine O-acetyltransferase; Provisional.	0
NZ_CP017513.1\|WP_020824140.1\|1507052_1508108_-\|hypothetical-protein	gnl\|CDD\|238697	cd01406, SIR2-like, Sir2-like: Prokaryotic group of uncharacterized Sir2-like proteins which lack certain key catalytic residues and conserved zinc binding cysteines; and are members of the SIR2 superfamily of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation.	1.63776e-08
NZ_CP017513.1\|WP_006250671.1\|1501742_1502606_-\|type-I-C-CRISPR-associated-protein-Cas7/Csd2	gnl\|CDD\|377458	pfam05107, Cas_Cas7, CRISPR-associated protein Cas7. CRISPR-associated protein Cas7 is one of the components of the type I-B cascade-like antiviral defense complex. In Haloferax volcanii, Cas5, Cas6 and Cas7 form a small complex that aids the stability of CRISPR-derived RNA.	6.00618e-155
NZ_CP017513.1\|WP_006250672.1\|1501077_1501743_-\|CRISPR-associated-protein-Cas4	gnl\|CDD\|273040	TIGR00372, conserved_hypothetical_protein, CRISPR-associated protein Cas4. This model represents a family of proteins associated with CRISPR repeats in a wide set of prokaryotic genomes. This scope of this model has been broadened since it was first built to describe an archaeal subset only. The function of the protein is undefined. Distantly related proteins, excluded from this model, include ORFs from Mycobacteriophage D29 and Sulfolobus islandicus filamentous virus and a region of the Schizosaccharomyces pombe DNA replication helicase Dna2p.	5.92936e-41
NZ_CP017513.1\|WP_006250670.1\|1502615_1504400_-\|type-I-C-CRISPR-associated-protein-Cas8c/Csd1	gnl\|CDD\|187887	cd09757, Cas8c_I-C, CRISPR/Cas system-associated protein Cas8c. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Zn-finger domain containing protein, distant homologs of Cas8 proteins; signature gene for I-C subtype; also known as Csd1 family.	0
NZ_CP017513.1\|WP_006250680.1\|1488465_1489218_-\|SDR-family-oxidoreductase	gnl\|CDD\|187604	cd05346, SDR_c5, classical (c) SDR, subgroup 5. These proteins are members of the classical SDR family, with a canonical active site tetrad and a typical Gly-rich NAD-binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.	4.41499e-146
NZ_CP017513.1\|WP_006250674.1\|1499164_1500178_-\|type-I-C-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|188360	TIGR03640, cas1_DVULG, CRISPR-associated endonuclease Cas1, subtype I-C/DVULG. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the DVULG subtype of CRISPR/Cas system.	0
NZ_CP017513.1\|WP_006250679.1\|1489443_1490976_-\|Na+/H+-antiporter-NhaC-family-protein	gnl\|CDD\|224671	COG1757, NhaC, Na+/H+ antiporter [Energy production and conversion].	4.15788e-96
NZ_CP017513.1\|WP_006248815.1\|1491892_1492732_+\|formyltetrahydrofolate-deformylase	gnl\|CDD\|235676	PRK06027, purU, formyltetrahydrofolate deformylase; Reviewed.	2.87146e-173
NZ_CP017513.1\|WP_006250667.1\|1508238_1510527_-\|CRISPR-associated-helicase/endonuclease-Cas3	gnl\|CDD\|350688	cd17930, DEXHc_cas3, DEXH/Q-box helicase domain of Cas3. CRISPR-associated (Cas) 3 is a nuclease-helicase responsible for degradation of dsDNA. The two enzymatic units of Cas3, a histidine-aspartate (HD) nuclease and a Superfamily 2 (SF2) helicase, may be expressed from separate genes as Cas3' (SF2 helicase) and Cas3'' (HD nuclease) or may be fused as a single HD-SF2 polypeptide. The nucleolytic activity of most Cas3 enzymes is transition metal ion-dependent. Cas3 is a member of the DEAD-like helicase superfamily, a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.	4.9519e-57
NZ_CP017513.1\|WP_006250681.1\|1487263_1488454_-\|tryptophan-synthase-subunit-beta	gnl\|CDD\|235288	PRK04346, PRK04346, tryptophan synthase subunit beta; Validated.	0
NZ_CP017513.1\|WP_006250669.1\|1505311_1507063_-\|DUF87-domain-containing-protein	gnl\|CDD\|223510	COG0433, COG0433, HerA helicase [Replication, recombination, and repair].	3.53798e-29

>NZ_CP017513.1|WP_006248118.1|1496526_1498002_-|ribonuclease-G
MSSTELLVNVTPSETRVALVENGILKELHIEREAKRGIVGNIYKGRVTRVLPGMQSAFVDIGLEKAAFLHASDIVSHTECVDENEKKQFLVKDISELVREGQDIVVQVVKDPIGTKGARLTTDITLPSRYLVFMPENSHVGVSQRIESEEERARLKSLVEPYCDELGGFIVRTAAEEATEESLKQDVEFLKRLWRKVLERKGKYSAKSMLYGELALAQRVLRDFIGTHINSVRIDSKLTYEQVREFLAEFMPELTDCVTLYTGQQTLFDAYGVEKAIQKALDKRVDLKSGGYLIIEQTEAMTTIDINTGAFVGHRNLAHTIFNTNIEAIQAIAHQLQLRNLGGIIIIDFIDMQEEEHRERVLQSLQEALKGDRVKTNVNGFTQLGLVEMTRKRTRESLERILCCDCQACQGRGTVKTVETVCYEIMREIVRVHHLFKTENIHVYAAKDVAEYLINEESHALLAELQAFIGKKIEIKLEPYYHQEQFDVVVM
>NZ_CP017513.1|WP_006250676.1|1494870_1496373_-|lysine--tRNA-ligase
MSEVENQELDLNGEMLARREKLNKIREQGNAFPNTFRRDALAKDLHAQYDAVEGETLKEQNIQVKVAGRIMLKRVMGKASFFTIQDVSGAIQLYVARDNLSDSVYEEKVSLWDLGDIVGVEGALFKTKTGELTVRCSEVQLLTKSLRPLPDKHHGLTDLETRYRQRYLDLISNEESRRTFMIRSQVVSGIRKFFLERDFIEVETPMLQVIPGGAAAKPFITHHNALDVDMYLRIAPELYLKRLVVGGFERVFELNRNFRNEGVSVRHNPEFTMIEYYQAYADYHDLMDNTEELLRQLALDILGTTDVPYGDYVFDFGKPFERITMHDAIVKYGNGIQREDLDSFEKSVEIAKGLGIEIQKSWGLGSVVNAIFEEVAEHQLIQPTFLMAHPAEISPLARRNDENPEVTDRFELFIGGREIGNGFSELNDAEDQAERFDAQVAAKDAGDDEAMFKDEDFIVALEHGLPPTAGEGLGIDRLAMIFANAPSIRDVILFPAMRQK
>NZ_CP017513.1|WP_006248812.1|1493719_1494793_+|homoserine-O-acetyltransferase
MAQQITLFEDVPLPLTLGGELSPITVAYQTYGRLNAEKSNAVLLCHALTGDAKPYYDSPTEKGWWQDFIGKGLAFDTDKYFFICSNVLGGCKGTTGPASINPKTNKPYGSLFPIITVQDIVNVQKALLDYLEIPQLHAVVGGSFGGMQATQWGISYPDKVRNIINLCSSLTLSAEAIGFNHVMRQAIINDPHFNGGNYYDGIAPDNGLKIARMLGMLTYRTDIQLAKAFGRETKQQGQIWGDHFQVESYLSYQGTKFLGRFDANTYLRLLRALDLYDPALGYENEETALKRIKANYTFVAVTSDQLFKQVDVYKSKQKLEQAGVNLEFHEFHSDFGHDAFLVDYDFFEPMIKAGLAK
>NZ_CP017513.1|WP_006250677.1|1492768_1493452_-|DUF218-domain-containing-protein
MNQTRDRLEKLPLFHKMQQFIIKALKIIAIFPLLGIAILLLVDSLTSYIVRDKIYTDSKQIPYREYAVVLGTAKFYSKDVINQYYKYRLEAAKQLVQEGKVNQLLLSGDNKTPYYNEPKTMTSDLLKMGIATSKIKQDYAGYTTFDSIIRAKKVYKLPPFTIISQKFHCERALFIAKFRDIDAICYAATYPEGAYQVRMREILARSAMVFSLLIGKEPESLEDIRSK
>NZ_CP017513.1|WP_006248815.1|1491892_1492732_+|formyltetrahydrofolate-deformylase
MLQQHKILLTECPDDTGLVAKITNICYKHQLNIIKNSEFVENETKRFFMRTELNGIFNDETLLTDLKFTLPEGSSYKLLPKQRKRIVILVTKEAHCLGDLLMKNYYGGLDVEIAAVIGNHETLKSLVERFDIPFHLVSHENLTRVEHDKLLAEKIDEYSPDYIVLAKYMRVLNPEFVARYPNRVVNIHHSFLPAFIGAKPYHRAYERGVKIIGATAHFVNDELDEGPIIMQNVINVDHTYTAEAMMRAGRDVEKTVLSQALELVLADKVFVYKNKTIIL
>NZ_CP017513.1|WP_006250678.1|1491412_1491823_+|H-NS-histone-family-protein
MSALKSLLNIRSLRALAKDLALEQLKSISEKLDIIIAEKEEEMKQEELEKLKQLESLNKYREMLKQDGLSIDELAELLADKVIKTRKARKALSPRPAKYKFVDANGNEKTWTGQGRTPKALQDALDSGKKLEDFAI
>NZ_CP017513.1|WP_006250679.1|1489443_1490976_-|Na+/H+-antiporter-NhaC-family-protein
MNLVDYSTSLWSVLPALIALILAIVTRKVIISLSIGILFGAFMLTNSNFLDALTYIKNSVVSLVYKGAEEGLNSNNVNIILFLLLLGVLTSLLSISGSNQAFANWAQKKVKGKRGAKLMAAGLVFFTFIDDYFHSLAVGAIARPVTDKFRVSRAKLAYILDSTAAPMCVLMPISSWGAYIITLIAGLLATHSITGYSPLGAFMTMSAMNFYAIFAMIMVFFVAYFSFDIGSMARFERQAAHLAELDDEQIETKGHVRDLILPIIALIVATVSMMMKTGADALAESGASFSILGAFENTTVGISLVVGGVAGLIVATICIITSGNISFKNYVRAYGLGVKMMSGAITILFFAWTINGVVSDMQTGKYLSGLVAESIGAEFLPAILFVLAAAMAFSTGTSWGTFGIMLPIGASMAVHSDPALIIPCLSAVMAGAVCGDHCSPVSDTTILSSTGAQCNHMDHVISQLPYALLVATASIVGYLVVGFTQSAVLGFIATAIVMAILILLFKEKKH
>NZ_CP017513.1|WP_006250680.1|1488465_1489218_-|SDR-family-oxidoreductase
MKIALVTGVTAGFGLAICKLLLQSGYKVIGTGRRAERLEELHLQFGDKFLPLAFDIQQPDEVEKALNSRPKAWQQIDLLVNNAGLALGLEPAQKADLNDWYQMIDTNIKGLVTMTRLVLPEMVERNSGHIINIGSIAGTYPYPGGNVYGGTKAFVKQFSLNLRADLAGTKVRVSNVEPGLCGGTEFSNVRFKGDDEKAAKVYENVQFVRPEDVANIVLWLNQQPEHVNINRVEVMPVAQTSSALNVARNI
>NZ_CP017513.1|WP_006250681.1|1487263_1488454_-|tryptophan-synthase-subunit-beta
MSDTLLNPYFGEFGGMYVPEILVPVLKELEQAFVDAQQDPTFQAEFADLLKNYAGRPTALTLCRNLTKGSKTKLYLKREDLLHGGAHKTNQVLGQILLAKRMGKTRIIAETGAGQHGVATALACAMLGMPCVVYMGAKDVERQSPNVFRMRLMGAEVIPVQKGSCSLKDACCEAMRDWAANYDTTHYLIGTAAGPHPFPTMVREFQKMIGEETKRQILAKEDRLPDAVIAAVGGGSNAIGMFADFIEEQSVKLIGVEPAGKGIETGEHGAPLKHGTTGIYFGMKSPIMQDKDGQIEESYSISAGLDFPSVGPQHAYLNATGRAEYVSITDAEALEAFQALAKNEGIIPALESSHALAYALKMIKQNPEKEQLLVVNLSGRGDKDIFTVDKILNGGE
>NZ_CP017513.1|WP_020824138.1|1486455_1487262_-|tryptophan-synthase-subunit-alpha
MSRFDTLFTALKAKNEGAFVPFVTLCDPGFERSFEIIDTMIKNGADALELGFPFSDPLLDGPVIQAANKRALDGGYSTDSCFELIAKIRAKYPDIPIGLLLCANLIFVPIAEVFFQRCQQSGVDAVLIADLPVFAAQEFVPTAEKYGIQPVFICPPNADQNTIERIAQLTQGYTYLVSRAGVTSAENQAHASNLDNLVESLKQTGAAPILQGFGIAKPEQVKEALRLGADGAISGSAIVKIIERNLSNQANLLKELAEFVQVMKAATK
>NZ_CP017513.1|WP_006248114.1|1498804_1499098_-|CRISPR-associated-endonuclease-Cas2
MLMLITYDISFDDPEGQARLRRIAKHCLDYGVRAQYSVFECDVTPAQWVTLKNKLLATYNPDCDSLRFYHLGSKWRNKVEHHGAKPSVDIFKDTLIL
>NZ_CP017513.1|WP_006250674.1|1499164_1500178_-|type-I-C-CRISPR-associated-endonuclease-Cas1
MRKLQNTLYITSQGSYLHKERETLVVEQDRKKVAQLPIHSIGHIFCFGNVLVSPFLMGFCGENNVNLAFFTENGRYLGRLQGRQSGNVLLRRAQYKKSETNPVPVARNIIAAKIQASKRVLQRQIRNHGENADIQLAITALNYSLQQLKIADNLNLIRGIEGDAAARYFGMFSHLIKENSGFHFDGRNRRPPRDGVNALLSFLYSILGKDISGALQGVGLDPQIGFLHADRPGRDSLAQDILEEFRAWWVDRMVLSLINRGQVKPDDFVTEASGAVTLKPEARKLLFQTLQAKKQEKIIHPFLEEEVEIGLLPYIQAMLLARHLRGDLAEYPPFLMR
>NZ_CP017513.1|WP_006250673.1|1500295_1500976_+|hypothetical-protein
MKRRFLFKNYGPDDQTIIQAIQHSVEISRKNNNSNIHIVFPRKSDFESTNLGKIIDQILGAGSAKKLTKGESIGSLDLLLPSRINSSNSSGTILAVYCTSHDMHLIDSNSSADDIIFVSWLPDEANHWENTWHNHGLIIMKGETSLNIPQIPEEIVQSLTNLTAIINLSTGLSHPSDKKHAEQIFKELSQKGYKADEEQIASWAIAHGWNASHLSDLKKLVRRYLS
>NZ_CP017513.1|WP_006250672.1|1501077_1501743_-|CRISPR-associated-protein-Cas4
MDDLQNSTEILPLVQPKFGYDKRSISLSALQHYAFCPRQCALIHNEQVWAENYLTAQGQVLHERVDSGEPETRKGIRFERTVHVAAEKLGISGILDLVERDLKTGELKPVEYKRGKPKPEPMDEIQLCAQALCLEEMTGQTINEGALWYMQTRHRLPITFSTELRTKTLATISEVRSLLNSGTTPLPKYSKRCKACSLIDLCQPQLLDRDRSERYVEEIFK
>NZ_CP017513.1|WP_006250671.1|1501742_1502606_-|type-I-C-CRISPR-associated-protein-Cas7/Csd2
MSIQNRYEFVFFFDVTNGNPNGDPDAGNMPRLDPETSKGLVTDVCLKRKIRNFIEMSYENEAGYEIYVKEKSVLNLQNKRAYEALGIESEAKKLPKEEAKAREITAWMCKNFFDIRTFGAVMTTEVNSGQVRGPVQLAFAQSIDPIIPLEVSITRMAVTNEKDLEKERTMGRKYIVPYALYRVHGFISAKLAEKTGFSDEDVQKLWQALQLMFEHDRSAARGEMAARKLIVFKHDSELGNQPAHKLFDSVKVERINGEKDTPAKDYDDYRISVQAEGLTGVTVEELL
>NZ_CP017513.1|WP_006250670.1|1502615_1504400_-|type-I-C-CRISPR-associated-protein-Cas8c/Csd1
MILSALTRYYYRLAAQEDRLTGEAKVPSYGFSEEKIGWVLELDSKGNLVNVISNLTEDKKPKPKLMSVPRPEKRTSGIKPNFLWDKTAYVLGIESNPDKATAKDQPINFAEKTFEAFKQYHLDLLADSNDEGLMAIRNFLQQWQPTHFAESICPREILDANVVFKLVGTSGYIHQREAAQTLWTSLLINQSDNAEKGLCLISGKLSPIQRTHPPIKGVFGGQSSGGSIISFNKESFTSFGKEQGSNAPVSEQAAFAYTTALNYLLRTEKHRLTIGDASTVFWAEADNTTQAEAAEGFFAALMTPPDDEQENQKIFEELQKISKGRPLAEISPELSENTRFYVLGLAPNAARISVRFWLDTTFGQLAKNLSEHWQDLALEPCAWKTPPSIWRLLLQTASLGKSENISPVLAGEMARAVISGHLYPMSLLSQLVTRIRADGDINGLRVALMKAVLQRKFRKGFIKEGVPMSLNKESDNQAYLLGRLFAVLERIQTQALGELNAGIADRYYGSASAVPFSVFPRLLSGAKHHLSRLRKDKGGMAVNLDKDLGEIIASLPENFPRHLSIDEQGRFAIGYYHQKQSYFAKKETTESIEN
>NZ_CP017513.1|WP_006248107.1|1504396_1505074_-|type-I-C-CRISPR-associated-protein-Cas5
MPNKIRLHIWGDYACFTRPEMKVERVSYDVITPSAARGILAAVHWKPAIRWVIDKIYVLQPIQFESVRRNELGSKISASKISGAMKRKTVADLYTVIEDDRQQRAATVLKNVGYVIEAHAVLTKMAGEAETVTKHIEMFKRRAKKGQCFQQPCMGVREFAANFALIDDDEPLPECFLAENERDRDLGWMLHDIDFEHGNQPRFFRAEMKNGVIDVPPFYAEEVKS
>NZ_CP017513.1|WP_006250669.1|1505311_1507063_-|DUF87-domain-containing-protein
MANETLNFKDNARLGRVVTVDTSRVLISVEEHQQMTSIAVGNLIAIQGRTASEYLIGIIERVTRSISEKLLLEEISNEGEIPLGESQDDFIKAVLIGTYKAVDGSLSNTFKRGADCFPQIDRDCFHISGSNLQLFMNLLSANVKENERLTLGHFMADETAVAIANGDKFFQRHAAILGSTGSGKSWSVALILERAAALKAANLIVFDMHGEYSTLCEGKNAIAQQYRIAGPGDLDGSDERSLFIPYWLLNREEMLALILDRSDDNAPNQAARFTEHVRALKEQTLNKEERNDVLETFTVDSPIPYSIELLLARLDKDNSEMVPKEGGSGTKQGPWYSKLSRFMGRMKAKIDDRRCGFMFQPPVECNSYGWLENMLSKLFSASESEKGIKIIDFSEVPSDVLPIVTGVLARLLYNIQFWMDKDSRHPLTIICDEAHLYLPVRDSAEAAEKRALEAFERIAKEGRKYGVSLLVVSQRPSDVSRTILSQCNNFLVLRLTNDQDQSVVKRLLPESMVGITDILPLLDLGEALLLGDSILLPTRIKLAKPHIAPESATRQFWSDWANQEPKPNAVSNAVEALRRQVRS
>NZ_CP017513.1|WP_020824140.1|1507052_1508108_-|hypothetical-protein
MREPLLDEDELKKWLQTIFTDNLVIIVGSGLSCAEGLPGMGALADRLKERMPECLDDIDKVTWNTISDCLDSEGLEGALLKHQANETIEAAIIKITAEYVLSEEQKAINKCIAENQKLKFSYLLPHISASNPKIARVITTNYDRLIEFAAEYENWGIDSMMVGRYWGKHNPDLSRKLQIRDIRVKGKCPKLVYRDHIKIFKPHGSLDWFMAGDVPMTSCIGKVEEPLIITPGVGKYKKGYGQPFDAHREKANEAIDSASSILCIGYGFNDDHLQTHLTGKIKSGVKTLLLTRGLSENARNVVKEAPNCKALIFDGDKAGTRVVSKQEETFIPNVHWWDVEFFVKEILENGK
>NZ_CP017513.1|WP_006250667.1|1508238_1510527_-|CRISPR-associated-helicase/endonuclease-Cas3
MEEHTIQSLYAHSGKLSDHSDWQTLLSHANNVGLLAAEFAAPFASQEIARCTGLLHDLGKYSERYQKRLHGGERVNHSTAGAKIAVERWGPLGKMMAFCIAGHHAGLANGSGEGKNRSTLTQRLQEQFGYGHKDLPVLDAIWQQELNLPEKLPLPPLKPSKNEPFFSYAFFIRMLYSCLVDADFLDTEAFYANLEKRPLERGNSPNLTALHQQFNQFIAQFRERITIQTPNTQEAQRKAEVNRLRSEILDYAVSQVKQETGLFSLTVPTGGGKTFTSMAFALEHAKQYGLCRIIYVIPFTSIIEQNAAEFRKAFGELGEEAVLEHHSTFDHDSLPDKSSRDKLKLASENWDAPVVVTTAVQFFESLFADRSSRCRKLHNIAGSVIILDEAQMLPLNLLRPIMAAIDELARNYQCSVVLCTATQPAIHQANGFYKGFENVREIAPNPTALFEKLKRTTVKHIGIQTDVELQSKLADNPQMLIIVNNRRHARALYDSAKQLEGAYHLTTLMCAKHRSQTLTEIRLRLKQNLPCRVIATSLIEAGVDVDFPLVMRAEAGLDSVAQAAGRCNREGKRLSVESNVWVFQPEEQWKAPPELGLLSGCMRSTVQVHADDLLNPKAINHYFQAVYEAKGKELDKPNILKACHDAGQSLNFPFQKIAEDFRMITSHLIPVIIPFDQEAENLIDRLRYADQVGGILRKLQPYTVQVPEKALAELYNAGRVETINETNFGKQFYCLIGMDLYDEVAGLSWENVDFLESEKLVL

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Crispr_ID: NZ_CP017513_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP017513_3

2045153-2045258

Orphan

Consensus_repeat	Method
ACTGTCAGATTAGGTTTGATCTTCTACA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP017513_3

>merge|NZ_CP017513|3|2045153-2045258|CRISPRCasFinder
ACTGTCAGATTAGGTTTGATCTTCTACAAAGCATTTAAGCTCAAATTAATCTGACAGGCACTATAATTTTAAACGGGAACTGTCAGATTAGGTTTGATCTTCTACA

>NZ_CP017513|3|3|2045153-2045258|CRISPRCasFinder
ACTGTCAGATTAGGTTTGATCTTCTACA	AAGCATTTAAGCTCAAATTAATCTGACAGGCACTATAATTTTAAACGGGA
ACTGTCAGATTAGGTTTGATCTTCTACA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP017513.1\|WP_006250878.1\|2050101_2050875_-\|Na(+)-translocating-NADH-quinone-reductase-subunit-C	unknown	unknown	gnl\|CDD\|235423
NZ_CP017513.1\|WP_006251971.1\|2041323_2043129_-\|DUF4153-domain-containing-protein	unknown	unknown	gnl\|CDD\|372672
NZ_CP017513.1\|WP_006251975.1\|2034051_2034558_-\|DNA-starvation/stationary-phase-protection-protein	unknown	unknown	gnl\|CDD\|223854
NZ_CP017513.1\|WP_020824074.1\|2032232_2033273_+\|IS481-family-transposase	unknown	unknown	gnl\|CDD\|366234
NZ_CP017513.1\|WP_006250397.1\|2045464_2045710_-\|(Na+)-NQR-maturation-NqrM	unknown	unknown	gnl\|CDD\|225538
NZ_CP017513.1\|WP_020824250.1\|2043332_2043998_+\|IS1595-like-element-ISMha4-family-transposase	unknown	unknown	gnl\|CDD\|226201
NZ_CP017513.1\|WP_006250395.1\|2046805_2047099_-\|nucleotidyltransferase-domain-containing-protein	unknown	unknown	gnl\|CDD\|143393
NZ_CP017513.1\|WP_006250391.1\|2049475_2050102_-\|NADH:ubiquinone-reductase-(Na(+)-transporting)-subunit-D	unknown	unknown	gnl\|CDD\|236457
NZ_CP017513.1\|WP_020824243.1\|2048877_2049474_-\|NADH:ubiquinone-reductase-(Na(+)-transporting)-subunit-E	unknown	unknown	gnl\|CDD\|235074
NZ_CP017513.1\|WP_020824239.1\|2031376_2032135_+\|IS481-family-transposase	unknown	unknown	gnl\|CDD\|379256
NZ_CP017513.1\|WP_006251974.1\|2034732_2037135_-\|penicillin-binding-protein-1B	unknown	unknown	gnl\|CDD\|273952
NZ_CP017513.1\|WP_006250393.1\|2047637_2048867_-\|NADH:ubiquinone-reductase-(Na(+)-transporting)-subunit-F	unknown	unknown	gnl\|CDD\|235481
NZ_CP017513.1\|WP_041447975.1\|2033312_2033987_-\|methyltransferase	unknown	unknown	gnl\|CDD\|226608
NZ_CP017513.1\|WP_006249501.1\|2037217_2038075_-\|1,4-dihydroxy-2-naphthoyl-CoA-synthase	unknown	unknown	gnl\|CDD\|180958
NZ_CP017513.1\|WP_020824242.1\|2045722_2046757_-\|FAD:protein-FMN-transferase	unknown	unknown	gnl\|CDD\|224394
NZ_CP017513.1\|WP_006250399.1\|2030761_2031073_-\|nucleotidyltransferase-domain-containing-protein	unknown	unknown	gnl\|CDD\|376187
NZ_CP017513.1\|WP_020824074.1\|2044081_2045122_+\|IS481-family-transposase	unknown	unknown	gnl\|CDD\|366234
NZ_CP017513.1\|WP_006253177.1\|2047091_2047526_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|378048
NZ_CP017513.1\|WP_006250388.1\|2052105_2053464_-\|Na(+)-translocating-NADH-quinone-reductase-subunit-A	unknown	unknown	gnl\|CDD\|235426
NZ_CP017513.1\|WP_006250389.1\|2050867_2052103_-\|NADH:ubiquinone-reductase-(Na(+)-transporting)-subunit-B	unknown	unknown	gnl\|CDD\|235425

Protein	Function_ID	Function_description	E-value
NZ_CP017513.1\|WP_006250878.1\|2050101_2050875_-\|Na(+)-translocating-NADH-quinone-reductase-subunit-C	gnl\|CDD\|235423	PRK05346, PRK05346, Na(+)-translocating NADH-quinone reductase subunit C; Provisional.	1.35443e-143
NZ_CP017513.1\|WP_006251971.1\|2041323_2043129_-\|DUF4153-domain-containing-protein	gnl\|CDD\|372672	pfam13687, DUF4153, Domain of unknown function (DUF4153). Members of this family are annotated as putative inner membrane proteins.	4.67287e-51
NZ_CP017513.1\|WP_006251975.1\|2034051_2034558_-\|DNA-starvation/stationary-phase-protection-protein	gnl\|CDD\|223854	COG0783, Dps, DNA-binding ferritin-like protein (oxidative damage protectant) [Inorganic ion transport and metabolism].	4.42266e-61
NZ_CP017513.1\|WP_020824074.1\|2032232_2033273_+\|IS481-family-transposase	gnl\|CDD\|366234	pfam00665, rve, Integrase core domain. Integrase mediates integration of a DNA copy of the viral genome into the host chromosome. Integrase is composed of three domains. The amino-terminal domain is a zinc binding domain pfam02022. This domain is the central catalytic domain. The carboxyl terminal domain that is a non-specific DNA binding domain pfam00552. The catalytic domain acts as an endonuclease when two nucleotides are removed from the 3' ends of the blunt-ended viral DNA made by reverse transcription. This domain also catalyzes the DNA strand transfer reaction of the 3' ends of the viral DNA to the 5' ends of the integration site.	2.18245e-24
NZ_CP017513.1\|WP_006250397.1\|2045464_2045710_-\|(Na+)-NQR-maturation-NqrM	gnl\|CDD\|225538	COG2991, COG2991, Uncharacterized protein conserved in bacteria [Function unknown].	7.16881e-29
NZ_CP017513.1\|WP_020824250.1\|2043332_2043998_+\|IS1595-like-element-ISMha4-family-transposase	gnl\|CDD\|226201	COG3676, COG3676, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	2.734e-40
NZ_CP017513.1\|WP_006250395.1\|2046805_2047099_-\|nucleotidyltransferase-domain-containing-protein	gnl\|CDD\|143393	cd05403, NT_KNTase_like, Nucleotidyltransferase (NT) domain of Staphylococcus aureus kanamycin nucleotidyltransferase, and similar proteins. S. aureus KNTase is a plasmid encoded enzyme which confers resistance to a wide range of aminoglycoside antibiotics which have a 4'- or 4''-hydroxyl group in the equatorial position, such as kanamycin A. This enzyme transfers a nucleoside monophosphate group from a nucleotide (ATP,GTP, or UTP) to the 4'-hydroxyl group of kanamycin A. This enzyme is a homodimer, having two NT active sites. The nucleotide and antibiotic binding sites of each active site include residues from each monomer. Included in this subgroup is Escherichia coli AadA5 which confers resistance to the antibiotic spectinomycin and is a putative aminoglycoside-3'-adenylyltransferase. It is part of the aadA5 cassette of a class 1 integron. This subgroup also includes Haemophilus influenzae HI0073 which forms a 2:2 heterotetramer with an unrelated protein HI0074. Structurally HI0074 is related to the substrate-binding domain of S. aureus KNTase. The genes encoding HI0073 and HI0074 form an operon. Little is known about the substrate specificity or function of two-component NTs. The characterized members of this subgroup may not be representive of the function of this subgroup. This subgroup belongs to the Pol beta-like NT superfamily. In the majority of enzymes in this superfamily, two carboxylates, Dx[D/E], together with a third more distal carboxylate, co-ordinate two divalent metal cations involved in a two-metal ion mechanism of nucleotide addition. These carboxylate residues are conserved in this subgroup.	1.17974e-11
NZ_CP017513.1\|WP_006250391.1\|2049475_2050102_-\|NADH:ubiquinone-reductase-(Na(+)-transporting)-subunit-D	gnl\|CDD\|236457	PRK09292, PRK09292, Na(+)-translocating NADH-quinone reductase subunit D; Validated.	8.22874e-139
NZ_CP017513.1\|WP_020824243.1\|2048877_2049474_-\|NADH:ubiquinone-reductase-(Na(+)-transporting)-subunit-E	gnl\|CDD\|235074	PRK02830, PRK02830, Na(+)-translocating NADH-quinone reductase subunit E; Provisional.	4.0318e-125
NZ_CP017513.1\|WP_020824239.1\|2031376_2032135_+\|IS481-family-transposase	gnl\|CDD\|379256	pfam13551, HTH_29, Winged helix-turn helix. This helix-turn-helix domain is often found in transferases and is likely to be DNA-binding.	1.04126e-17
NZ_CP017513.1\|WP_006251974.1\|2034732_2037135_-\|penicillin-binding-protein-1B	gnl\|CDD\|273952	TIGR02071, Includes:_Penicillin-insensitive_transglycosylase, penicillin-binding protein 1B. Bacterial that synthesize a cell wall of peptidoglycan (murein) generally have several transglycosylases and transpeptidases for the task. This family consists of a particular bifunctional transglycosylase/transpeptidase in E. coli and other Proteobacteria, designated penicillin-binding protein 1B. [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan].	0
NZ_CP017513.1\|WP_006250393.1\|2047637_2048867_-\|NADH:ubiquinone-reductase-(Na(+)-transporting)-subunit-F	gnl\|CDD\|235481	PRK05464, PRK05464, Na(+)-translocating NADH-quinone reductase subunit F; Provisional.	0
NZ_CP017513.1\|WP_041447975.1\|2033312_2033987_-\|methyltransferase	gnl\|CDD\|226608	COG4123, COG4123, Predicted O-methyltransferase [General function prediction only].	7.16738e-58
NZ_CP017513.1\|WP_006249501.1\|2037217_2038075_-\|1,4-dihydroxy-2-naphthoyl-CoA-synthase	gnl\|CDD\|180958	PRK07396, PRK07396, dihydroxynaphthoic acid synthetase; Validated.	0
NZ_CP017513.1\|WP_020824242.1\|2045722_2046757_-\|FAD:protein-FMN-transferase	gnl\|CDD\|224394	COG1477, ApbE, Membrane-associated lipoprotein involved in thiamine biosynthesis [Coenzyme metabolism].	1.20967e-126
NZ_CP017513.1\|WP_006250399.1\|2030761_2031073_-\|nucleotidyltransferase-domain-containing-protein	gnl\|CDD\|376187	pfam18765, Polbeta, Polymerase beta, Nucleotidyltransferase. A member of the nucleotidyltransferase fold found in polymorphic toxins (NTox45) and polyvalent proteins.	7.26223e-19
NZ_CP017513.1\|WP_020824074.1\|2044081_2045122_+\|IS481-family-transposase	gnl\|CDD\|366234	pfam00665, rve, Integrase core domain. Integrase mediates integration of a DNA copy of the viral genome into the host chromosome. Integrase is composed of three domains. The amino-terminal domain is a zinc binding domain pfam02022. This domain is the central catalytic domain. The carboxyl terminal domain that is a non-specific DNA binding domain pfam00552. The catalytic domain acts as an endonuclease when two nucleotides are removed from the 3' ends of the blunt-ended viral DNA made by reverse transcription. This domain also catalyzes the DNA strand transfer reaction of the 3' ends of the viral DNA to the 5' ends of the integration site.	2.18245e-24
NZ_CP017513.1\|WP_006253177.1\|2047091_2047526_-\|hypothetical-protein	gnl\|CDD\|378048	pfam08780, NTase_sub_bind, Nucleotidyltransferase substrate binding protein like. Nucleotidyltransferases (EC 2.7.7) comprise a large enzyme family with diverse roles in polynucleotide synthesis and modification. This domain is structurally related to kanamycin nucleotidyltransferase (KNTase) and forms a complex with HI0073, a sequence homolog of the nucleotide-binding domain of this nucleotidyltransferase superfamily.	6.0995e-37
NZ_CP017513.1\|WP_006250388.1\|2052105_2053464_-\|Na(+)-translocating-NADH-quinone-reductase-subunit-A	gnl\|CDD\|235426	PRK05352, PRK05352, Na(+)-translocating NADH-quinone reductase subunit A; Provisional.	0
NZ_CP017513.1\|WP_006250389.1\|2050867_2052103_-\|NADH:ubiquinone-reductase-(Na(+)-transporting)-subunit-B	gnl\|CDD\|235425	PRK05349, PRK05349, Na(+)-translocating NADH-quinone reductase subunit B; Provisional.	0

>NZ_CP017513.1|WP_020824074.1|2044081_2045122_+|IS481-family-transposase
MFYSNNPLIKHKTGLLNLAEELGNISQACKVMGMSRDTFYRYQQAVEQGGVEALLNQNRRVPNLKNRVDEAIEQAVVKFALDNPAFGQVRVSNELRKQGIFVSAGGVRSIWLRHHLANFKQRLIALEKLVAEQGIILSETQVQALERKKEDEIACGEIETAHPGYLGSQDTFYVGNLKGVGRIYQQTFIDTYSKVAFAKLYTMKTAISAADMLNDKVLPYFESQGLPMLRILTDRGSEYCGKVENHDYELYLAINDIEHSKTKVKHPQTNGICERFHKTILQEFYQVAFRKKIYTDLTTLQADLDEWLMYYNHHRTHQGKMCCGRTPMATLLDGKRIWVEKNLSSN
>NZ_CP017513.1|WP_020824250.1|2043332_2043998_+|IS1595-like-element-ISMha4-family-transposase
MRKSRLSQYKQNKLIEQFVAGVTARTASELVNVNKNTAAYYFHRLRLLIYQHSPHLEMFEGEIEVDESYFGGHRKGKRGRGAAGKTAVFGLLKRDGKVYTVVVPNTQSATLLPIIREKVKPDSIVYTDFYRSYDVLDVSEFNHFRINHSTHFAENQNHINGIENFGSQAKRHLRKFNGIPKVHFELYLKECEWRFNHSDLKSQISFLKQLVKGSLGVEDQT
>NZ_CP017513.1|WP_006251971.1|2041323_2043129_-|DUF4153-domain-containing-protein
MLSKLQRFTLMIKSTIIKHPLEILFVTYVTILLINNVSDYELIKRFQNLIALFPICFILLYLIRDTKAYWLFALIPIAIVFFFDQINLTLLEDSRYWATIFCVFLCLISQYWYKNNHYFVAGTTNKLVNIVFATVLSGIIFATLSAITIAIIALFDLNKQNNFHIFEKFGIFSSFWAFPVLFLTLEQQTTNDSRYLNRISEMLLNWILSPALIIYTAIIYAYVIFIAAKGQMPDGVVANVALPYLAFGLAIQAVQLLLKNAKWQWFYSLFTYLALLPLTLIWYAIYIRFSHYGLTEARIYLVIGTITLSICYTLLLFKQLAQYRLFSAVSIAIILISVFILDPKTVALKDQTKRLDNYLLKHKLLDVNNKISTKAVLKYQESLNENRDEAEYFYSMLHYVARGMPAAQFKEKYGVNSSYDLMSEIRERNTDPRYFEATNSELVRLTKADMANAREYITFSSQLYRPNSFSHQKIENKLCQKLLSQGYYFEGNILNIEYQYSETAQDCSSITQDPTEFVIYFKGLGTTIEFNINDILKKIFAKHHLSITQQHKNEVLEKIKGDLLKMDLGNSVLGLKHIELRFEDNIGYIVESISTQYIMLK
>NZ_CP017513.1|WP_006249501.1|2037217_2038075_-|1,4-dihydroxy-2-naphthoyl-CoA-synthase
MLYPSEEFLYAPVEWVDHSEGYTDIRYHKSKDGIAKITINRPEVRNAFRPQTVKEMIEAFSDARFDEKIGVIVLTGEGEYAFCAGGDQKVRGDYGGYKDESGVHHLNVLDFQRDIRTCPKPVVAMVAGYAIGGGHVLHMLCDLTIAADNAKFGQTGPKVGSFDGGWGASYMARLVGQKKAREIWFLCRQYNAQEALDMGLINTVVPYADLEKETVRWCREMLQNSPIALRCLKAALNADCDGQAGLQELAGNATMLFYMTEEGQEGRNAFNEKREPDFSKFRRNP
>NZ_CP017513.1|WP_006251974.1|2034732_2037135_-|penicillin-binding-protein-1B
MSDVELNEQSEQEPEQKPKKRNYFLSTLFKIGVIGACSMAFYGIYLDGKIRSKMDGQIWELPAEVYARIESIKIEDNLTLEQTKQALLDNGYRQVSQVATPGDFKIEENQLVLLRRAFPFPETPESQRVLRLTFKQDKLTYIEDLVQGKLIEEFRLDPKLLALLHSDSDEERQALRLQQYPRLLIESLILTEDRRFYQHDGISPIGIARALITNYQAGRTVQGGSTLTQQLVKNLFLSNERSLVRKVNEALMSVILDFRYDKNRILETYLNEIYLGQNGSYQIHGFALASQFYFGRPIQEISLDQIALLVGMVKGPSLYNPWRNPQGAVERRNVVLRLLLDHQVINQELYALLSSRPLNIREKGTIYREQPAFMQALTIDLKNELGEIKSAQLSGTKIFTTLDRKQQRSAEQAVITGLENLESKNKKVSDLQSAIVVAEYRTGKVRAIVGDRLTQFAGFNRAIQSKRQIGSLVKPSVYAIALAQPELFRLNTPIQNKQISIKVGSTYWTPRNYDRSFSGSVMLMDALVRSLNIPTVNIGMKVGLKKVIAKQKEMGWDNAEIPPYPSTLLGSYSISPYDVTRSYQVIANEGLKTPLTTIEAIISHNGEMFYQRDSGKVSEQVLPPEAAVQTMYAMQQVVERGTARSLQNDFAKLKLAGKTGTTNNARDTWFVGIDGEHVTTVWLGKDNNGDTNLTGSSGALYVYKQYLERALPQAYRLPKLNTMQWVGINSYGSWNCDSGRQIPVWRDKGQRYCTSAGNVVATEKPSVWDALSLKKENIEAKAEEAEGKQPIPTEEVAPIE
>NZ_CP017513.1|WP_006251975.1|2034051_2034558_-|DNA-starvation/stationary-phase-protection-protein
MAMSNIGLDKEIAKKLADELNGLLATYQVFYTNVRGYHWNVRGVNFFELHAKFEEIYDDLVTKVDEIAERILTLGHTPQNAFSQYLTKSQIQEHIGVSAAQECLRGTLNGFKTLLGQQREILALASDANDEGTASQMSDYIKEQEKLVWMFTAACAECSDYAQGCSCN
>NZ_CP017513.1|WP_041447975.1|2033312_2033987_-|methyltransferase
MSQGFQFKQFFIRHDRCAMKVNTDGILLGAIAHIKDCQNILDLGTGSGLVALMLAQRTDDCCHITALELEPNAYQQAVENAQNSAWANRISVLQGDVMQQAFEQKFDLIVSNPPYFADSLAARTTERDLARSISHYSHLNWLAKAKPWLAENGKITLILPIAAAEKLVDQSEQIGLYCVEQWLIFTKSGKLAKRSIVSFSLNKQKREHKELIIYDLDNCVEDQT
>NZ_CP017513.1|WP_020824074.1|2032232_2033273_+|IS481-family-transposase
MFYSNNPLIKHKTGLLNLAEELGNISQACKVMGMSRDTFYRYQQAVEQGGVEALLNQNRRVPNLKNRVDEAIEQAVVKFALDNPAFGQVRVSNELRKQGIFVSAGGVRSIWLRHHLANFKQRLIALEKLVAEQGIILSETQVQALERKKEDEIACGEIETAHPGYLGSQDTFYVGNLKGVGRIYQQTFIDTYSKVAFAKLYTMKTAISAADMLNDKVLPYFESQGLPMLRILTDRGSEYCGKVENHDYELYLAINDIEHSKTKVKHPQTNGICERFHKTILQEFYQVAFRKKIYTDLTTLQADLDEWLMYYNHHRTHQGKMCCGRTPMATLLDGKRIWVEKNLSSN
>NZ_CP017513.1|WP_020824239.1|2031376_2032135_+|IS481-family-transposase
MFYSNNPLIKHKTGLLNLAEELGNISQACKVMGMSRDTFYRYQQAVEQGGVDALLNQNRRVPNLKNRVDEATEQAVVKFAFDNPAFGQVRVSNELRKQGIFISAGGVRSSWLRHNLANFKQRLNALEKAVAEKGIILSENQVQALERKKEDDVACGEIETAHPGYLGSQDTFYVGNLKGVGRIYQQTFIDTYSKVAFAKLYTMKTAISAADMLNDKVLPFFESQGLPMLRILTDRGSEYCGKVENHDYELYL
>NZ_CP017513.1|WP_006250399.1|2030761_2031073_-|nucleotidyltransferase-domain-containing-protein
MPNFGLSERATKTITDILAKYPEVEQAIIYGSRAKGNYREGSDVDLTFKGKDLTYDIVKRIWGDLDDSDSPYLFDLSIYHQLTNANFIEHIDRVGKVFYQREL
>NZ_CP017513.1|WP_006250397.1|2045464_2045710_-|(Na+)-NQR-maturation-NqrM
METVLLTFGFFVAVIFAMSIGFIVKGKTIKGSCGGITALGMKKMCDCEEPCDNLKSKIADGTADPEEVARFNKEPQFYEVK
>NZ_CP017513.1|WP_020824242.1|2045722_2046757_-|FAD:protein-FMN-transferase
MKKFFLLLIAFFTLSACEKAPEQITLSGKTMGTTYTVKYIDNGEVENLISPEKMKNELDGLLIEVNNQMSTYQQDSEISRFNQAKQANQAVEISQDFAKVVQEAIRLNKVTEGALDVTVGPLVNLWGFGPDKRLNKVPSDEQIAERSAYVGIDKILLEMSSKPKLTKSAANLYLDLSSIAKGFGVDKLAEHLETIGVSNYLVEIGGELRGKGKNLQGLDWRIAIEQPVMTQGQAAQITVPLHNLAMATSGNYRNYFEDEKGNRLSHIIDPKQLRPVNHNLASITVFAPTTMTADGLSTGLFVLGAEKALAVAEREKLAIFLIVKNGDKFETQMSSEFSKLIQSQ
>NZ_CP017513.1|WP_006250395.1|2046805_2047099_-|nucleotidyltransferase-domain-containing-protein
MIDLTESQRQQVLDIFKKYLPDTPVWVFGSRIKGTAKAYSDLDLALITKQPLTIRQQTELELAFTDSDLPFTVDLIDWASCNESFKQIILQRYEVLI
>NZ_CP017513.1|WP_006253177.1|2047091_2047526_-|hypothetical-protein
MEQLDITALENAFNSLEKTIVSLENQAWFNRQEAIIQDTLIAGAIQKFEFVYELSIKMLKRQLKNIESNDTDIDSTEFRDILRMAAQYGLIESPEVWLDYRKMRNITSHTYDQNKAQQVYNGISNFLESTYFLVKQLQKRNSYD
>NZ_CP017513.1|WP_006250393.1|2047637_2048867_-|NADH:ubiquinone-reductase-(Na(+)-transporting)-subunit-F
MDSNFIFGIIAFTALVLVLAVIILFAKSKLVDSGDITISINNDPEKGITLPAGGKLLGALASKGIFVSSACGGGGSCGQCKVQVKSGGGEILPTELSHISKKEAKEGWRLACQVNVKSSMDVELPEEIFGVKKWECTVISNDNKATFIKELKLQIPEGEEVPFRAGGYIQIEAEPHTVHYKDFDIPKEYHEDWDKFDLWRYTSKVDEHIIRAYSMASYPEEKGIIMLNVRIATPPPRNPDVPPGQMSSYIWSLKPGDKVTISGPFGEFFAKDTDAEMVFIGGGAGMAPMRSHIFDQLKRLKSKRKMSFWYGARSEREMFYVEDFDGLQAENDNFKWYVALSDPLPGDREDYFRGFIHNVLYENYLKNHEAPEDCEYYMCGPPVMNAAVIGMLKSLGVEDENILLDDFGG
>NZ_CP017513.1|WP_020824243.1|2048877_2049474_-|NADH:ubiquinone-reductase-(Na(+)-transporting)-subunit-E
MEHLLSIFVKSVFIENMALSFFLGMCTFLAVSKKVSTAFGLGIAVIVVLGIAVPANQLVYTHVLKEGALVEGVDLSFLNFITFIGVIAALVQILEMILDKFFPALYSALGIFLPLITVNCAIFGGVSFMVQREYNFVESVVYGVGAGTGWMLAIVALAGLTEKMKYSDVPAGLRGLGITFITVGLMALGFMSFSGIQL
>NZ_CP017513.1|WP_006250391.1|2049475_2050102_-|NADH:ubiquinone-reductase-(Na(+)-transporting)-subunit-D
MADNNNLKKLLLSPIVDNNPIALQILGICSALAVTTQLQTAVVMAIAVSLVTAFSSMFISMIRNYIPNSIRIIVQMAIIASLVILVDQILRAYAYDLSKQLSVFVGLIITNCIVMGRAEAFAMKSGPVESFVDGIGNGLGYGAMLIIVAFLRELIGSGKIFGITILETVQNGGWYQANGLFLLAPSAFFIIGFVIWAIRTWKPEQVEK
>NZ_CP017513.1|WP_006250878.1|2050101_2050875_-|Na(+)-translocating-NADH-quinone-reductase-subunit-C
MAKFNKDSVGGTLTVVVLLSLICSLIVAGAAVMLKPTQDIQKQLDKQKNILQAAGLLQKDTNVQETYTKFIEPKIVDLATGDYVEGVTGFDARAAAKDPAQNVVIAPEDDKANIKTRAKYAEVYLVKDESGKTTQVVLPMHGNGLWSIMYGFVAVQPDANTVNGITYYEQGETAGLGGEIVNPNWQKNFVGKKLYNEQNQVALRVGKGASADKDHGVDGLSGATLTSNGVDGSFKYWFGQNGFGPYLAKFKAAAGAN
>NZ_CP017513.1|WP_006250389.1|2050867_2052103_-|NADH:ubiquinone-reductase-(Na(+)-transporting)-subunit-B
MGLKNLFEKMEPAFHKGGKYEKWYTLFEAAYTIFYTPGTVTRKDAHVRDAIDSKRMMLIVWLALFPAMFYGMYNVGAQGILAALKMGTLTDLVANNWHYSLADSLGSVADAGWGTKMLLGATYFLPIYLTVFAVGGFWEVVFAMVRKHEINEGFFVTSILLALIVPPTLPLWQAALATTFGVVVAKEVFGGVGKNFMNPALAGRAFLFFAYPGQISGDAVWVAADGFSGATALSQWAVGGQGALQHVATGETITWMDAFLGNIPGSIGETSTLMLIIGAAIIVFARIASWRIIAGVMIGMAATATLFNVIGSDTNPLFSMPWHWHLVLGGFAIGMFFMATDPVSAAFTNKGKWAYGILIGFMCVLIRVVNPAYPEGMMLAILFANLFAPIFDYLVVQGNIKRRLARVANNG
>NZ_CP017513.1|WP_006250388.1|2052105_2053464_-|Na(+)-translocating-NADH-quinone-reductase-subunit-A
MITIKKGLDLPIAGKPEQVIHNGNTVTEVAMLGEEYVGMRPSMKVREGDVVKKGQVLFEDKKNPGVVFTAPASGTVTAINRGEKRVLQSVVIKVEGDEQITFARYEASQLASLTSEQVKQNLVESGLWTAFRTRPFSKVPALDAEPSSIFVNAMDTNPLAANPEVIIAEHQQAFFDGLTVLSRLFESKKVIHLCGSADSNILNAAQSRQINNVETNRFKGPHPAGLSGTHIHFIDPVGATKQVWYLNYQDVIAIGKLFTTGELFTDRVVALAGPQVKNPRLVRTRLGANLSQLTANELNAGENRVISGSVLSGAIATGVHDYLGRYALQVSALLEGREKAFFGMIAPYSDKYSITRTTLGHFAKKLFNFTTAVHGSERAMVPTGAYERVMPLDIIPTLLLRDLAAGDTDSAQALGCLELDEEDLALCTFVCSGKNNWGPLLRQALDKIEKDG

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NZ_CP017513_3	3.1\|2045181\|50\|NZ_CP017513\|CRISPRCasFinder	2045181-2045230	50	NZ_CP017513.1	697401-697450	0	1.0
NZ_CP017513_3	3.1\|2045181\|50\|NZ_CP017513\|CRISPRCasFinder	2045181-2045230	50	NZ_CP017513.1	1701062-1701111	0	1.0
NZ_CP017513_3	3.1\|2045181\|50\|NZ_CP017513\|CRISPRCasFinder	2045181-2045230	50	NZ_CP017513.1	1239969-1240018	1	0.98

1. spacer 3.1|2045181|50|NZ_CP017513|CRISPRCasFinder matches to position: 697401-697450, mismatch: 0, identity: 1.0

aagcatttaagctcaaattaatctgacaggcactataattttaaacggga	CRISPR spacer
aagcatttaagctcaaattaatctgacaggcactataattttaaacggga	Protospacer
**************************************************

2. spacer 3.1|2045181|50|NZ_CP017513|CRISPRCasFinder matches to position: 1701062-1701111, mismatch: 0, identity: 1.0

aagcatttaagctcaaattaatctgacaggcactataattttaaacggga	CRISPR spacer
aagcatttaagctcaaattaatctgacaggcactataattttaaacggga	Protospacer
**************************************************

3. spacer 3.1|2045181|50|NZ_CP017513|CRISPRCasFinder matches to position: 1239969-1240018, mismatch: 1, identity: 0.98

aagcatttaagctcaaattaatctgacaggcactataattttaaacggga	CRISPR spacer
aagcatttaagctcaaattaatctgacagacactataattttaaacggga	Protospacer
*****************************.********************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP017513_2	2.1\|1498284\|35\|NZ_CP017513\|PILER-CR,CRISPRCasFinder,CRT	1498284-1498318	35	NC_028853	Mannheimia phage vB_MhS_535AP2, complete genome	31900-31934	0	1.0
NZ_CP017513_2	2.1\|1498284\|35\|NZ_CP017513\|PILER-CR,CRISPRCasFinder,CRT	1498284-1498318	35	KP137439	Mannheimia phage vB_MhS_3927AP1, complete genome	33856-33890	0	1.0
NZ_CP017513_2	2.1\|1498284\|35\|NZ_CP017513\|PILER-CR,CRISPRCasFinder,CRT	1498284-1498318	35	NC_028956	Mannheimia phage vB_MhS_1152AP2, complete genome	33963-33997	0	1.0
NZ_CP017513_2	2.3\|1498418\|34\|NZ_CP017513\|PILER-CR,CRISPRCasFinder,CRT	1498418-1498451	34	NC_028853	Mannheimia phage vB_MhS_535AP2, complete genome	34963-34996	1	0.971
NZ_CP017513_2	2.3\|1498418\|34\|NZ_CP017513\|PILER-CR,CRISPRCasFinder,CRT	1498418-1498451	34	KP137439	Mannheimia phage vB_MhS_3927AP1, complete genome	36919-36952	1	0.971
NZ_CP017513_2	2.3\|1498418\|34\|NZ_CP017513\|PILER-CR,CRISPRCasFinder,CRT	1498418-1498451	34	NC_028956	Mannheimia phage vB_MhS_1152AP2, complete genome	37026-37059	1	0.971
NZ_CP017513_3	3.1\|2045181\|50\|NZ_CP017513\|CRISPRCasFinder	2045181-2045230	50	NC_007800	Bibersteinia trehalosi plasmid pCCK13698, complete sequence	913-962	1	0.98
NZ_CP017513_3	3.1\|2045181\|50\|NZ_CP017513\|CRISPRCasFinder	2045181-2045230	50	NZ_CP018033	Glaesserella parasuis D74 plasmid pD74, complete sequence	6036-6085	2	0.96
NZ_CP017513_3	3.1\|2045181\|50\|NZ_CP017513\|CRISPRCasFinder	2045181-2045230	50	NZ_CP054196	Glaesserella parasuis strain YHP170504 plasmid unnamed2, complete sequence	1676-1725	2	0.96
NZ_CP017513_3	3.1\|2045181\|50\|NZ_CP017513\|CRISPRCasFinder	2045181-2045230	50	NC_006829	Haemophilus parasuis plasmid pHS-Rec, complete sequence	8881-8930	2	0.96
NZ_CP017513_1	1.1\|1045553\|29\|NZ_CP017513\|CRISPRCasFinder	1045553-1045581	29	MH791397	UNVERIFIED: Enterococcus phage EfsSzw-1, complete genome	22354-22382	5	0.828
NZ_CP017513_2	2.1\|1498284\|35\|NZ_CP017513\|PILER-CR,CRISPRCasFinder,CRT	1498284-1498318	35	NZ_CP020003	Bacillus thuringiensis strain Bacillus thuringiensis L-7601 plasmid unnamed1, complete sequence	42539-42573	10	0.714
NZ_CP017513_2	2.2\|1498351\|35\|NZ_CP017513\|PILER-CR,CRISPRCasFinder,CRT	1498351-1498385	35	NZ_CP054028	Rhizobium sp. JKLM19E plasmid pPR19E01, complete sequence	627317-627351	10	0.714

1. spacer 2.1|1498284|35|NZ_CP017513|PILER-CR,CRISPRCasFinder,CRT matches to NC_028853 (Mannheimia phage vB_MhS_535AP2, complete genome) position: , mismatch: 0, identity: 1.0

aattgcctgtacatcaacataaccacaaacacgga	CRISPR spacer
aattgcctgtacatcaacataaccacaaacacgga	Protospacer
***********************************

2. spacer 2.1|1498284|35|NZ_CP017513|PILER-CR,CRISPRCasFinder,CRT matches to KP137439 (Mannheimia phage vB_MhS_3927AP1, complete genome) position: , mismatch: 0, identity: 1.0

aattgcctgtacatcaacataaccacaaacacgga	CRISPR spacer
aattgcctgtacatcaacataaccacaaacacgga	Protospacer
***********************************

3. spacer 2.1|1498284|35|NZ_CP017513|PILER-CR,CRISPRCasFinder,CRT matches to NC_028956 (Mannheimia phage vB_MhS_1152AP2, complete genome) position: , mismatch: 0, identity: 1.0

aattgcctgtacatcaacataaccacaaacacgga	CRISPR spacer
aattgcctgtacatcaacataaccacaaacacgga	Protospacer
***********************************

4. spacer 2.3|1498418|34|NZ_CP017513|PILER-CR,CRISPRCasFinder,CRT matches to NC_028853 (Mannheimia phage vB_MhS_535AP2, complete genome) position: , mismatch: 1, identity: 0.971

gtttcagcacttgctcgtctgtctagatgtaagc	CRISPR spacer
gtttcggcacttgctcgtctgtctagatgtaagc	Protospacer
*****.****************************

5. spacer 2.3|1498418|34|NZ_CP017513|PILER-CR,CRISPRCasFinder,CRT matches to KP137439 (Mannheimia phage vB_MhS_3927AP1, complete genome) position: , mismatch: 1, identity: 0.971

gtttcagcacttgctcgtctgtctagatgtaagc	CRISPR spacer
gtttcggcacttgctcgtctgtctagatgtaagc	Protospacer
*****.****************************

6. spacer 2.3|1498418|34|NZ_CP017513|PILER-CR,CRISPRCasFinder,CRT matches to NC_028956 (Mannheimia phage vB_MhS_1152AP2, complete genome) position: , mismatch: 1, identity: 0.971

gtttcagcacttgctcgtctgtctagatgtaagc	CRISPR spacer
gtttcggcacttgctcgtctgtctagatgtaagc	Protospacer
*****.****************************

7. spacer 3.1|2045181|50|NZ_CP017513|CRISPRCasFinder matches to NC_007800 (Bibersteinia trehalosi plasmid pCCK13698, complete sequence) position: , mismatch: 1, identity: 0.98

aagcatttaagctcaaattaatctgacaggcactataattttaaacggga	CRISPR spacer
aagcatttaagctcaaattaatctgacagacactataattttaaacggga	Protospacer
*****************************.********************

8. spacer 3.1|2045181|50|NZ_CP017513|CRISPRCasFinder matches to NZ_CP018033 (Glaesserella parasuis D74 plasmid pD74, complete sequence) position: , mismatch: 2, identity: 0.96

aagcatttaagctcaaattaatctgacaggcactataattttaaacggga	CRISPR spacer
aagtatttaagctcaaattaatctgacagacactataattttaaacggga	Protospacer
***.*************************.********************

9. spacer 3.1|2045181|50|NZ_CP017513|CRISPRCasFinder matches to NZ_CP054196 (Glaesserella parasuis strain YHP170504 plasmid unnamed2, complete sequence) position: , mismatch: 2, identity: 0.96

aagcatttaagctcaaattaatctgacaggcactataattttaaacggga	CRISPR spacer
aagtatttaagctcaaattaatctgacagacactataattttaaacggga	Protospacer
***.*************************.********************

10. spacer 3.1|2045181|50|NZ_CP017513|CRISPRCasFinder matches to NC_006829 (Haemophilus parasuis plasmid pHS-Rec, complete sequence) position: , mismatch: 2, identity: 0.96

aagcatttaagctcaaattaatctgacaggcactataattttaaacggga	CRISPR spacer
aagtatttaagctcaaattaatctgacagacactataattttaaacggga	Protospacer
***.*************************.********************

11. spacer 1.1|1045553|29|NZ_CP017513|CRISPRCasFinder matches to MH791397 (UNVERIFIED: Enterococcus phage EfsSzw-1, complete genome) position: , mismatch: 5, identity: 0.828

tctttataccctagattagtatcaggtct	CRISPR spacer
gccttataccctagattattatgaggttt	Protospacer
 *.*************** *** ****.*

12. spacer 2.1|1498284|35|NZ_CP017513|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP020003 (Bacillus thuringiensis strain Bacillus thuringiensis L-7601 plasmid unnamed1, complete sequence) position: , mismatch: 10, identity: 0.714

aattgcctgtacatcaacataaccacaaacacgga	CRISPR spacer
tctcttttgttcatcaacataaccataaacacgat	Protospacer
  *. ..*** **************.*******.

13. spacer 2.2|1498351|35|NZ_CP017513|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP054028 (Rhizobium sp. JKLM19E plasmid pPR19E01, complete sequence) position: , mismatch: 10, identity: 0.714

tcgaaaatcttccacgcatttacgccgatgtcagt	CRISPR spacer
aagaaaatcttccacccatttacgctgatcctttg	Protospacer
  ************* *********.*** ..

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

696380 : 746561

Mannheimia_phage(79.17%)

head,transposase,plate,tail,integrase,terminase

attL 745380:745439|attR 751464:751879

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_147009073.1\|696380_697421_+\|transposase	IS481 family transposase	A0A0M3LS26	Mannheimia_phage	1.2e-195	97.1
WP_051138299.1\|697544_698105_+	hypothetical protein	NA	NA	NA	NA
WP_020831169.1\|698085_700017_+	DUF262 domain-containing protein	NA	NA	NA	NA
WP_006253059.1\|700159_700342_-	hypothetical protein	NA	NA	NA	NA
WP_080542692.1\|700491_701532_+	selenide, water dikinase SelD	NA	NA	NA	NA
WP_006248779.1\|701531_702005_+	NUDIX hydrolase	NA	NA	NA	NA
WP_006251194.1\|701994_703203_+	2-octaprenyl-6-methoxyphenyl hydroxylase	NA	NA	NA	NA
WP_006248781.1\|703465_704698_+	uracil-xanthine permease	NA	NA	NA	NA
WP_006251193.1\|704764_705751_+	dihydroorotate dehydrogenase	NA	NA	NA	NA
WP_006248783.1\|705791_706202_-	DUF2251 domain-containing protein	NA	NA	NA	NA
WP_006251191.1\|706267_707578_-	phosphopyruvate hydratase	A0A1X9I5Z8	Streptococcus_phage	6.8e-132	60.9
WP_020831176.1\|707992_708712_-	helix-turn-helix transcriptional regulator	F6MII3	Haemophilus_phage	2.6e-64	60.0
WP_020831178.1\|708888_709167_+	DNA-binding protein	F6MII4	Haemophilus_phage	2.0e-17	58.8
WP_006251264.1\|711093_711975_+	AAA family ATPase	A0A0M3LP72	Mannheimia_phage	1.7e-155	99.3
WP_020831183.1\|711985_712234_+	hypothetical protein	NA	NA	NA	NA
WP_006251265.1\|712243_712564_+	hypothetical protein	A0A0M3LQH1	Mannheimia_phage	1.8e-41	90.3
WP_005822932.1\|712566_712758_+	hypothetical protein	A0A0M3LQK4	Mannheimia_phage	5.6e-27	95.2
WP_006251266.1\|712770_713388_+	DUF3164 family protein	A0A0M3LQ92	Mannheimia_phage	3.7e-112	99.5
WP_006251267.1\|713706_713919_+	ANR family transcriptional regulator	A0A0M3LSH0	Mannheimia_phage	1.9e-15	85.4
WP_032844828.1\|713924_714107_+	hypothetical protein	A0A0M3LSN0	Mannheimia_phage	5.0e-25	98.3
WP_006251269.1\|714129_714705_+	DUF5420 family protein	A0A0M3LP85	Mannheimia_phage	1.3e-98	93.2
WP_032848912.1\|714717_715086_+	hypothetical protein	F6MIJ4	Haemophilus_phage	1.5e-31	53.0
WP_006251272.1\|715327_715882_+	hypothetical protein	A0A0M3LPP6	Mannheimia_phage	9.7e-96	98.4
WP_020831190.1\|715865_716288_+	regulatory protein GemA	A0A0M3LP80	Mannheimia_phage	3.3e-72	97.1
WP_020831192.1\|716643_717243_+	antirepressor	A0A0R6PJV6	Moraxella_phage	8.7e-26	55.0
WP_006251275.1\|717253_717460_+	hypothetical protein	NA	NA	NA	NA
WP_006251276.1\|717552_718443_+	hypothetical protein	NA	NA	NA	NA
WP_006251277.1\|718570_719002_+	hypothetical protein	A0A0M3LRS6	Mannheimia_phage	3.3e-51	69.2
WP_006248646.1\|719087_719621_+	glycoside hydrolase family 108 protein	A0A0M3LSH2	Mannheimia_phage	5.6e-101	100.0
WP_020831193.1\|719623_719866_+	DUF2644 domain-containing protein	A0A0M3LSN9	Mannheimia_phage	3.2e-35	91.4
WP_020831194.1\|719862_720222_+	DUF2681 domain-containing protein	A0A0M3LP93	Mannheimia_phage	3.8e-53	86.6
WP_005606396.1\|720384_720642_+	hypothetical protein	A0A0M3LPQ4	Mannheimia_phage	9.5e-14	100.0
WP_005606393.1\|720641_720896_+	hypothetical protein	A0A0M3LP87	Mannheimia_phage	6.1e-29	100.0
WP_006251281.1\|720903_721404_+	DUF1804 family protein	A0A0M3LQI8	Mannheimia_phage	8.8e-80	97.0
WP_020831198.1\|721553_723179_+\|terminase	phage terminase large subunit	A0A0M3LQB7	Mannheimia_phage	0.0e+00	97.4
WP_020831201.1\|723247_724921_+	DUF935 domain-containing protein	A0A0M3LRU4	Mannheimia_phage	1.2e-298	92.8
WP_006251285.1\|724907_726197_+\|head	head morphogenesis protein	B7SDN5	Haemophilus_phage	2.1e-218	85.5
WP_006251286.1\|726344_726761_+	phage virion morphogenesis protein	A0A0M3LSP9	Mannheimia_phage	2.3e-70	96.4
WP_132303683.1\|726757_726976_-	hypothetical protein	NA	NA	NA	NA
WP_020831206.1\|727019_728087_+	hypothetical protein	A0A0M3LPA7	Mannheimia_phage	1.1e-183	93.2
WP_006251289.1\|728086_729004_+\|tail	tail sheath protein	B7SDP1	Haemophilus_phage	5.6e-149	84.9
WP_115262444.1\|729049_729367_+	hypothetical protein	A0A0M3LPR6	Mannheimia_phage	1.9e-27	90.8
WP_006248659.1\|729366_729792_+	DUF1320 domain-containing protein	A0A0M3LP98	Mannheimia_phage	4.0e-73	100.0
WP_006248660.1\|729788_730430_+	DUF1834 family protein	A0A0M3LQJ7	Mannheimia_phage	4.0e-117	100.0
WP_006248661.1\|730430_730610_+	DUF2635 domain-containing protein	A0A0M3LQM9	Mannheimia_phage	2.2e-25	100.0
WP_020831214.1\|730609_732019_+\|tail	tail sheath protein	A0A0M3LQC3	Mannheimia_phage	7.6e-254	99.4
WP_006251294.1\|732029_732404_+\|tail	phage tail protein	A0A0M3LRV6	Mannheimia_phage	3.3e-63	99.2
WP_006251295.1\|732403_732772_+	hypothetical protein	A0A0M3LSI2	Mannheimia_phage	1.0e-61	98.4
WP_006251296.1\|732801_732990_+	hypothetical protein	A0A0M3LSQ8	Mannheimia_phage	2.2e-28	100.0
WP_147009454.1\|733042_735322_+\|tail	phage tail tape measure protein	A0A0M3LPB6	Mannheimia_phage	0.0e+00	95.8
WP_006251298.1\|735321_736614_+	hypothetical protein	A0A0M3LQ21	Mannheimia_phage	1.2e-232	95.6
WP_006248665.1\|736616_737744_+	hypothetical protein	A0A0M3LPS4	Mannheimia_phage	1.6e-209	99.7
WP_006251299.1\|737745_738396_+\|plate	phage baseplate assembly protein	A0A0M3LPA3	Mannheimia_phage	6.0e-97	87.4
WP_020831216.1\|738504_738855_+	hypothetical protein	A0A0M3LQK5	Mannheimia_phage	1.2e-59	98.3
WP_020831218.1\|738867_739929_+\|plate	baseplate J/gp47 family protein	A0A0M3LQN4	Mannheimia_phage	1.7e-194	99.7
WP_006251302.1\|739928_740495_+	DUF2313 domain-containing protein	A0A0M3LQE1	Mannheimia_phage	1.9e-70	71.6
WP_147009455.1\|740495_743222_+	hypothetical protein	A0A0M3LS19	Mannheimia_phage	0.0e+00	90.3
WP_020824100.1\|743222_743846_+	DUF4376 domain-containing protein	A0A0M3LRX2	Mannheimia_phage	1.1e-111	97.1
WP_006252023.1\|743838_744303_+	hypothetical protein	F6MIM0	Haemophilus_phage	2.6e-54	63.0
WP_050412813.1\|744423_745212_+	hypothetical protein	F6MIM2	Haemophilus_phage	7.8e-107	68.7
745380:745439	attL	NA	NA	NA	NA
WP_006248925.1\|745796_746561_+\|integrase	site-specific integrase	A0A2H4JBC4	uncultured_Caudovirales_phage	8.0e-08	29.0
WP_006248925.1\|745796_746561_+\|integrase	site-specific integrase	A0A2H4JBC4	uncultured_Caudovirales_phage	8.0e-08	29.0
751464:751879	attR	NA	NA	NA	NA

DBSCAN-SWA_2

999209 : 1005994

Mycobacterium_phage(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_031200389.1\|999209_999992_+	alpha/beta fold hydrolase	G1DB77	Mycobacterium_phage	1.3e-05	36.4
WP_006252001.1\|1000001_1000730_+	carboxy-S-adenosyl-L-methionine synthase CmoA	H9YRL8	environmental_Halophage	1.2e-21	29.1
WP_006248949.1\|1000865_1001885_+	HTH-type transcriptional repressor PurR	C6ZCU4	Enterobacteria_phage	1.9e-33	32.9
WP_006248950.1\|1001886_1002489_+	DedA family protein	NA	NA	NA	NA
WP_006248951.1\|1002617_1002773_-	DUF1328 domain-containing protein	NA	NA	NA	NA
WP_006248952.1\|1002850_1003432_-	dCTP deaminase	I4AZP2	Saccharomonospora_phage	5.9e-27	38.4
WP_006248953.1\|1003446_1004094_-	uridine kinase	A0A1V0SAA3	Catovirus	4.7e-33	36.6
WP_006248954.1\|1004197_1004827_+	amino acid transporter	NA	NA	NA	NA
WP_006248955.1\|1004941_1005994_+	rod shape-determining protein	F2Y2E1	Organic_Lake_phycodnavirus	1.2e-06	22.1

DBSCAN-SWA_3

1315766 : 1391812

Mannheimia_phage(85.0%)

head,capsid,transposase,holin,terminase,plate,tRNA,tail,portal,integrase

attL 1318183:1318199|attR 1360210:1360226

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_006252789.1\|1315766_1318154_-\|tRNA	phenylalanine--tRNA ligase subunit beta	A0A1L3IZU3	BeAn_58058_virus	4.7e-06	23.6
1318183:1318199	attL	NA	NA	NA	NA
WP_006249336.1\|1318201_1319188_-\|tRNA	phenylalanine--tRNA ligase subunit alpha	A0A2K9L3A8	Tupanvirus	7.1e-33	37.4
WP_006249338.1\|1319416_1320076_+	NAD(P)H-dependent oxidoreductase	NA	NA	NA	NA
WP_006251547.1\|1321560_1322313_-	Zn-ribbon-containing protein	NA	NA	NA	NA
WP_020824087.1\|1322312_1323212_-	cation diffusion facilitator family transporter	NA	NA	NA	NA
WP_006251545.1\|1323220_1323784_-	hypothetical protein	NA	NA	NA	NA
WP_006251544.1\|1323783_1324560_-	peroxide stress protein YaaA	NA	NA	NA	NA
WP_006249344.1\|1324659_1325055_-	30S ribosomal protein S9	NA	NA	NA	NA
WP_006251543.1\|1325071_1325500_-	50S ribosomal protein L13	NA	NA	NA	NA
WP_006248128.1\|1325798_1326194_+	YhcB family protein	NA	NA	NA	NA
WP_006251541.1\|1326354_1327926_-	glutamine-hydrolyzing GMP synthase	NA	NA	NA	NA
WP_006248130.1\|1327942_1328254_-	hypothetical protein	NA	NA	NA	NA
WP_006248131.1\|1328375_1329047_-	HAD family phosphatase	NA	NA	NA	NA
WP_006252792.1\|1329167_1330631_-	IMP dehydrogenase	A0A1V0SHK8	Klosneuvirus	8.8e-96	40.6
WP_006248133.1\|1330858_1334026_-	MMPL family transporter	S5VTK5	Leptospira_phage	2.9e-51	22.2
WP_006248134.1\|1334039_1335245_-	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA
WP_006251539.1\|1335275_1335848_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_006248136.1\|1336086_1336308_+	DUF1414 domain-containing protein	NA	NA	NA	NA
WP_006253659.1\|1336312_1338046_+	DUF3413 domain-containing protein	NA	NA	NA	NA
WP_006251537.1\|1338757_1339138_-	hypothetical protein	NA	NA	NA	NA
WP_006251536.1\|1339179_1343640_-	chromosome partition protein MukB	NA	NA	NA	NA
WP_020824088.1\|1343815_1344532_-	chromosome partition protein MukE	NA	NA	NA	NA
WP_142777995.1\|1344580_1345924_-	chromosome partition protein MukF	NA	NA	NA	NA
WP_020824090.1\|1346181_1347069_-	UTP--glucose-1-phosphate uridylyltransferase GalU	A0A127AW70	Bacillus_phage	8.6e-62	47.6
WP_006248142.1\|1347204_1347390_-	carbon storage regulator CsrA	A0A2I7RT00	Vibrio_phage	8.4e-12	66.7
WP_006252798.1\|1347479_1350107_-\|tRNA	alanine--tRNA ligase	A0A2K9L1X7	Tupanvirus	9.3e-80	37.3
WP_006252799.1\|1350301_1350727_-	universal stress protein	NA	NA	NA	NA
WP_006252800.1\|1350957_1351731_+	FNR family transcription factor	NA	NA	NA	NA
WP_006252801.1\|1351874_1352666_+	SDR family oxidoreductase	NA	NA	NA	NA
WP_006248148.1\|1352718_1353015_-	hypothetical protein	A0A2R2X2B2	Escherichia_phage	2.1e-12	42.3
WP_006251532.1\|1353039_1353318_-	hypothetical protein	NA	NA	NA	NA
WP_006252803.1\|1353477_1355454_+	exoribonuclease II	NA	NA	NA	NA
WP_006251529.1\|1355545_1356358_+	bis(5'-nucleosyl)-tetraphosphatase (symmetrical)	S4TT53	Salmonella_phage	4.5e-09	35.6
WP_006248153.1\|1356725_1357724_+\|integrase	site-specific integrase	Q19US1	Mannheimia_phage	1.1e-185	100.0
WP_006248154.1\|1358001_1358184_+	hypothetical protein	Q19US2	Mannheimia_phage	2.7e-23	100.0
WP_006248155.1\|1358453_1358744_-	hypothetical protein	A0A0M3LQ35	Mannheimia_phage	3.2e-50	100.0
WP_142778027.1\|1358718_1358988_-	hypothetical protein	A0A0M3LQ12	Mannheimia_phage	7.1e-44	98.9
WP_006248157.1\|1358977_1359310_-	hypothetical protein	A0A0M3LNQ0	Mannheimia_phage	2.3e-60	100.0
WP_006248158.1\|1359320_1359773_-	single-stranded DNA-binding protein	A0A0M3LP44	Mannheimia_phage	1.7e-77	100.0
WP_006248159.1\|1359772_1360105_-	hypothetical protein	A0A0M3LPG9	Mannheimia_phage	2.5e-59	100.0
WP_061888586.1\|1360117_1362478_-	replication endonuclease	A0A0M3LNQ7	Mannheimia_phage	0.0e+00	100.0
1360210:1360226	attR	NA	NA	NA	NA
WP_061888587.1\|1362474_1362807_-	hypothetical protein	A0A0M3LRZ6	Mannheimia_phage	9.3e-62	100.0
WP_006248162.1\|1362803_1363046_-	hypothetical protein	Q19UT0	Mannheimia_phage	9.5e-40	100.0
WP_042803562.1\|1363196_1363490_-	hypothetical protein	A0A0M3LPS8	Mannheimia_phage	1.1e-50	100.0
WP_006248165.1\|1363498_1363831_-	hypothetical protein	Q19UT2	Mannheimia_phage	4.8e-50	100.0
WP_006248166.1\|1363913_1364186_-	hypothetical protein	Q19UN6	Mannheimia_phage	4.5e-46	100.0
WP_006253660.1\|1364325_1364571_+	hypothetical protein	A0A0M3LNP3	Mannheimia_phage	3.8e-36	100.0
WP_006248168.1\|1364669_1364882_-	helix-turn-helix domain-containing protein	Q19UN8	Mannheimia_phage	4.9e-32	100.0
WP_006248169.1\|1365005_1365692_+	helix-turn-helix domain-containing protein	A0A0M3LPF9	Mannheimia_phage	7.0e-128	100.0
WP_061888588.1\|1365695_1366214_+	hypothetical protein	A0A0M3LNP7	Mannheimia_phage	2.5e-93	100.0
WP_006253662.1\|1366231_1366642_+	hypothetical protein	A0A0M3LP57	Mannheimia_phage	5.5e-72	100.0
WP_020824074.1\|1366753_1367794_+\|transposase	IS481 family transposase	A0A0M3LS26	Mannheimia_phage	1.4e-201	100.0
WP_061888665.1\|1367853_1368228_-	hypothetical protein	A0A0M3LQX4	Mannheimia_phage	1.6e-73	100.0
WP_061888664.1\|1368227_1369469_-	phage late control D family protein	A0A0M3LPR9	Mannheimia_phage	1.2e-218	100.0
WP_061888663.1\|1369468_1369906_-\|tail	phage tail protein	A0A0M3LQ18	Mannheimia_phage	2.5e-75	100.0
WP_006250974.1\|1369905_1370292_-	hypothetical protein	A0A0M3LPZ9	Mannheimia_phage	2.0e-63	100.0
WP_100067200.1\|1370352_1370493_-\|tail	GpE family phage tail protein	R9QCM4	Mannheimia_phage	1.5e-18	93.5
WP_006248177.1\|1370492_1370807_-\|tail	phage tail assembly protein	Q19UP7	Mannheimia_phage	3.8e-49	100.0
WP_006250976.1\|1370887_1371394_-\|tail	phage major tail tube protein	A0A0M3LP31	Mannheimia_phage	3.5e-92	100.0
WP_061888662.1\|1371402_1372584_-\|tail	phage tail sheath protein	A0A0M3LPE9	Mannheimia_phage	8.1e-225	100.0
WP_061888661.1\|1372685_1372949_-	hypothetical protein	A0A0M3LNN9	Mannheimia_phage	5.7e-46	100.0
WP_061888660.1\|1372917_1373553_-	DUF4376 domain-containing protein	A0A0M3LRX2	Mannheimia_phage	1.1e-119	100.0
WP_062627915.1\|1373553_1376568_-	hypothetical protein	A0A0M3LQ17	Mannheimia_phage	0.0e+00	99.8
WP_061888620.1\|1376570_1377110_-\|tail	phage tail protein I	A0A0M3LQW2	Mannheimia_phage	4.5e-98	100.0
WP_061888619.1\|1377096_1378014_-\|plate	baseplate assembly protein	A0A0M3LPQ9	Mannheimia_phage	1.5e-165	100.0
WP_006250780.1\|1378010_1378346_-	hypothetical protein	A0A0M3LQ08	Mannheimia_phage	5.9e-56	100.0
WP_006248188.1\|1378345_1378951_-\|plate	phage baseplate assembly protein V	A0A0M3LPY9	Mannheimia_phage	9.3e-84	100.0
WP_062627916.1\|1379079_1379367_-	type II toxin-antitoxin system RelE/ParE family toxin	A0A0M3LNM7	Mannheimia_phage	6.2e-46	100.0
WP_006250778.1\|1379359_1379539_-	hypothetical protein	A0A0M3LP21	Mannheimia_phage	7.5e-26	100.0
WP_061888618.1\|1379600_1382513_-\|tail	phage tail protein	A0A0M3LPE0	Mannheimia_phage	0.0e+00	100.0
WP_006248191.1\|1382551_1382830_+	hypothetical protein	Q19UR1	Mannheimia_phage	2.6e-33	100.0
WP_061888617.1\|1382880_1383339_-	phage virion morphogenesis protein	A0A0M3LNN0	Mannheimia_phage	6.8e-79	100.0
WP_061888616.1\|1383331_1383817_-\|tail	phage tail protein	A0A0M3LRW0	Mannheimia_phage	4.5e-89	100.0
WP_006248194.1\|1383813_1384035_-	TraR/DksA family transcriptional regulator	A0A0M3LS11	Mannheimia_phage	3.4e-36	100.0
WP_006248210.1\|1384183_1384639_-	hypothetical protein	A0A0M3LQV2	Mannheimia_phage	1.4e-71	100.0
WP_006252831.1\|1384635_1385202_-	lysozyme	A0A0M3LPQ1	Mannheimia_phage	2.3e-105	100.0
WP_006250772.1\|1385194_1385401_-\|holin	holin	Q19UR7	Mannheimia_phage	7.6e-30	100.0
WP_006250771.1\|1385406_1385619_-\|tail	tail protein	A0A0M3LPY0	Mannheimia_phage	2.0e-33	100.0
WP_006248195.1\|1385615_1386131_-\|head	head completion/stabilization protein	A0A0M3LNL8	Mannheimia_phage	3.3e-90	100.0
WP_061888615.1\|1386242_1386932_-\|terminase	terminase endonuclease subunit	A0A0M3LP11	Mannheimia_phage	2.2e-121	100.0
WP_147009074.1\|1386941_1387970_-\|capsid	phage major capsid protein, P2 family	A0A0M3LPD2	Mannheimia_phage	7.8e-192	99.7
WP_006252839.1\|1387983_1388811_-\|capsid	GPO family capsid scaffolding protein	A0A0M3LNM2	Mannheimia_phage	5.4e-135	100.0
WP_081107628.1\|1388924_1390763_+\|terminase	terminase ATPase subunit family protein	A0A0M3LRV4	Mannheimia_phage	0.0e+00	100.0
WP_061888613.1\|1390771_1391812_+\|portal	phage portal protein	A0A0M3LS06	Mannheimia_phage	2.7e-200	100.0

DBSCAN-SWA_4

1423862 : 1476445

Mannheimia_phage(45.28%)

head,integrase,holin,terminase

attL 1426437:1426456|attR 1476597:1476616

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_006252023.1\|1423862_1424327_-	hypothetical protein	F6MIM0	Haemophilus_phage	2.6e-54	63.0
WP_020824100.1\|1424319_1424943_-	DUF4376 domain-containing protein	A0A0M3LRX2	Mannheimia_phage	1.1e-111	97.1
WP_147009459.1\|1424943_1427883_-	hypothetical protein	A0A0M3LS19	Mannheimia_phage	0.0e+00	93.5
1426437:1426456	attL	NA	NA	NA	NA
WP_006252064.1\|1427955_1428576_-	DUF2612 domain-containing protein	A0A220NQG4	Acinetobacter_phage	3.7e-27	37.2
WP_006252668.1\|1428572_1429769_-	hypothetical protein	K4I3B4	Acinetobacter_phage	3.0e-62	36.6
WP_006252062.1\|1429765_1430116_-	hypothetical protein	A0A2R3UAP1	Myoviridae_environmental_samples	1.7e-13	39.5
WP_006252669.1\|1430119_1430782_-	hypothetical protein	A0A2R3UAK1	Myoviridae_environmental_samples	2.1e-36	42.0
WP_006252670.1\|1430771_1431659_-	hypothetical protein	K4I0K5	Acinetobacter_phage	3.6e-44	34.2
WP_132303704.1\|1431658_1431955_-	hypothetical protein	NA	NA	NA	NA
WP_020824103.1\|1431957_1432665_-	hypothetical protein	A0A1X9SFH6	Acinetobacter_phage	1.8e-33	45.5
WP_020824105.1\|1432899_1433796_-	hypothetical protein	Q0H8C7	Salmonella_phage	1.4e-35	40.4
WP_006252056.1\|1434080_1434260_-	hypothetical protein	D0UIH9	Aggregatibacter_phage	4.0e-19	84.7
WP_006252055.1\|1434411_1435083_-	SHOCT domain-containing protein	NA	NA	NA	NA
WP_006252054.1\|1435105_1435768_-	hypothetical protein	NA	NA	NA	NA
WP_020824107.1\|1435767_1438437_-	peptidoglycan-binding protein LysM	A0A1V0DZ47	Acinetobacter_phage	3.3e-64	31.9
WP_020824108.1\|1438609_1439014_-	hypothetical protein	NA	NA	NA	NA
WP_006252051.1\|1439081_1439603_-	ATPase	A0A0M3LR56	Mannheimia_phage	4.4e-34	53.5
WP_006252050.1\|1439737_1440181_-	hypothetical protein	Q8HAQ5	Burkholderia_phage	4.5e-11	35.1
WP_006252049.1\|1440238_1441717_-	DUF3383 domain-containing protein	K4PB47	Acinetobacter_phage	3.9e-99	41.3
WP_006252048.1\|1441732_1442239_-	hypothetical protein	NA	NA	NA	NA
WP_006252047.1\|1442223_1442604_-	hypothetical protein	NA	NA	NA	NA
WP_020824109.1\|1442611_1443316_-	hypothetical protein	NA	NA	NA	NA
WP_006252045.1\|1443318_1443924_-	hypothetical protein	NA	NA	NA	NA
WP_006252044.1\|1443920_1444352_-	DUF4054 domain-containing protein	A0A0S1WH65	Pseudomonas_phage	2.8e-26	45.9
WP_006252043.1\|1444354_1444729_-	hypothetical protein	Q6IWU7	Burkholderia_phage	3.1e-13	36.0
WP_006252679.1\|1444798_1445929_-	DUF2184 domain-containing protein	I6ZXX2	Escherichia_phage	9.9e-79	46.0
WP_006252041.1\|1445940_1446450_-	hypothetical protein	NA	NA	NA	NA
WP_020824111.1\|1446461_1447718_-	DUF2213 domain-containing protein	Q6IWU4	Burkholderia_phage	2.4e-41	40.0
WP_006252039.1\|1447714_1448905_-	hypothetical protein	NA	NA	NA	NA
WP_006252680.1\|1448957_1449788_-\|head	phage head protein	H9C0V1	Aeromonas_phage	8.4e-19	28.7
WP_020824114.1\|1449762_1451274_-	DUF1073 domain-containing protein	I7B6L5	Escherichia_phage	4.3e-114	48.7
WP_020824115.1\|1451341_1452721_-\|terminase	phage terminase large subunit	A0A0D4DCE6	Acinetobacter_phage	4.5e-150	60.9
WP_020824116.1\|1452723_1453221_-	hypothetical protein	C7U0W1	Enterobacteria_phage	8.8e-48	70.4
WP_081107630.1\|1453421_1453601_+	hypothetical protein	A0A0M3LTH4	Mannheimia_phage	2.0e-18	84.9
WP_006252684.1\|1453610_1453760_-	hypothetical protein	A0A0M3LSZ0	Mannheimia_phage	8.8e-20	87.8
WP_006252685.1\|1453788_1454139_-	DUF2570 domain-containing protein	A0A0M3LPB1	Mannheimia_phage	2.3e-26	94.0
WP_020824120.1\|1454139_1454736_-	glycoside hydrolase family 19 protein	A0A0M3LPP0	Mannheimia_phage	8.2e-93	84.3
WP_006251970.1\|1454750_1455194_-\|holin	phage holin, lambda family	A0A0M3ULK9	Salmonella_phage	2.4e-12	36.4
WP_006251969.1\|1455245_1455719_-	hypothetical protein	A0A0M3LPW4	Mannheimia_phage	1.7e-80	96.2
WP_020824122.1\|1455708_1456278_-	recombination protein NinG	A0A0M3LTG3	Mannheimia_phage	5.1e-84	84.7
WP_020824123.1\|1456350_1456812_-	DUF1367 family protein	A0A0M3LPN2	Mannheimia_phage	1.4e-31	45.8
WP_061888672.1\|1456832_1457405_-	adenine methyltransferase	A0A0M3LNW2	Mannheimia_phage	2.1e-106	97.4
WP_075271793.1\|1457415_1458462_-	hypothetical protein	M4SQA9	Psychrobacter_phage	1.1e-23	52.6
WP_006252350.1\|1458458_1459298_-	hypothetical protein	A0A2H4J5H6	uncultured_Caudovirales_phage	2.2e-27	37.4
WP_006252074.1\|1459360_1459804_-	hypothetical protein	NA	NA	NA	NA
WP_006252073.1\|1459852_1460047_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_006252072.1\|1460143_1460803_+	aspartate carbamoyltransferase	NA	NA	NA	NA
WP_006252071.1\|1460802_1461642_+	helix-turn-helix domain-containing protein	A0A1W6JNY2	Morganella_phage	5.2e-16	28.9
WP_006252070.1\|1461658_1462486_+	hypothetical protein	M9NYX6	Enterobacteria_phage	1.8e-58	44.8
WP_142778103.1\|1462501_1462879_-	hypothetical protein	NA	NA	NA	NA
WP_032849124.1\|1462884_1463343_-	hypothetical protein	NA	NA	NA	NA
WP_006252067.1\|1463499_1463796_+	hypothetical protein	NA	NA	NA	NA
WP_006248786.1\|1464261_1464513_+	hypothetical protein	A0A0M3LNV4	Mannheimia_phage	1.7e-31	85.2
WP_006248787.1\|1464515_1464791_-	hypothetical protein	A0A1J0MFQ1	Staphylococcus_phage	1.2e-06	30.4
WP_006252947.1\|1465468_1465984_+	DUF4760 domain-containing protein	NA	NA	NA	NA
WP_020824127.1\|1466250_1466961_+	hypothetical protein	A0A0R6PDL2	Moraxella_phage	8.5e-28	53.5
WP_006252958.1\|1467067_1467574_+	hypothetical protein	A0A0M3LTE5	Mannheimia_phage	7.0e-85	90.5
WP_006250254.1\|1467577_1467937_+	hypothetical protein	A0A0M3LSX3	Mannheimia_phage	4.5e-62	100.0
WP_006250951.1\|1467933_1468413_+	hypothetical protein	A0A0M3LQ82	Mannheimia_phage	1.3e-75	100.0
WP_020824130.1\|1468546_1468759_+	hypothetical protein	A0A0M3LQ55	Mannheimia_phage	8.9e-34	100.0
WP_020824131.1\|1468771_1469695_+	hypothetical protein	A0A0M3LNU3	Mannheimia_phage	2.9e-169	100.0
WP_032848956.1\|1469687_1470350_+	translocation protein TolB precursor	A0A0M3LP90	Mannheimia_phage	4.5e-124	100.0
WP_006252710.1\|1470390_1470657_+	hypothetical protein	A0A0M3LPL3	Mannheimia_phage	2.6e-06	100.0
WP_006252708.1\|1470684_1471137_+	hypothetical protein	A0A0M3LNU4	Mannheimia_phage	1.1e-84	99.3
WP_006252707.1\|1471235_1471454_+	DUF551 domain-containing protein	A0A0M3LS47	Mannheimia_phage	1.7e-32	98.4
WP_061888593.1\|1472148_1472985_+	KilA-N domain-containing protein	Q4ZC41	Staphylococcus_virus	1.7e-75	50.7
WP_020824132.1\|1473370_1474213_+	antirepressor	Q7Y5X0	Haemophilus_phage	1.5e-36	62.8
WP_020824134.1\|1474728_1475112_+	hypothetical protein	A0A0M3LPT1	Mannheimia_phage	9.1e-69	99.2
WP_006247823.1\|1475161_1475383_+	DUF4224 domain-containing protein	A0A0M3LQA2	Mannheimia_phage	1.3e-35	100.0
WP_020824135.1\|1475404_1476445_+\|integrase	tyrosine-type recombinase/integrase	A0A0M3LQJ3	Mannheimia_phage	2.4e-196	96.2
1476597:1476616	attR	NA	NA	NA	NA

DBSCAN-SWA_5

1629404 : 1678762

Mannheimia_phage(25.0%)

protease,tRNA,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_020824074.1\|1629404_1630445_-\|transposase	IS481 family transposase	A0A0M3LS26	Mannheimia_phage	1.4e-201	100.0
WP_006250724.1\|1630770_1631169_-	8-oxo-dGTP diphosphatase MutT	NA	NA	NA	NA
WP_006250723.1\|1631255_1633982_-	preprotein translocase subunit SecA	NA	NA	NA	NA
WP_006249304.1\|1634040_1634361_-	DUF2547 family protein	NA	NA	NA	NA
WP_006249303.1\|1634481_1634784_+	DUF721 domain-containing protein	NA	NA	NA	NA
WP_006249302.1\|1634808_1635183_+	copper resistance protein NlpE	NA	NA	NA	NA
WP_020824156.1\|1635539_1635851_-	BolA/IbaG family iron-sulfur metabolism protein	NA	NA	NA	NA
WP_006250721.1\|1635942_1636530_+	hypothetical protein	NA	NA	NA	NA
WP_006253344.1\|1636855_1637146_+	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA
WP_020824157.1\|1637205_1637937_+	16S rRNA (uracil(1498)-N(3))-methyltransferase	NA	NA	NA	NA
WP_006247900.1\|1637936_1638497_+	YqgE/AlgH family protein	NA	NA	NA	NA
WP_006247899.1\|1638496_1638922_+	Holliday junction resolvase RuvX	NA	NA	NA	NA
WP_006247898.1\|1638968_1640021_+	AI-2E family transporter	NA	NA	NA	NA
WP_006247896.1\|1640405_1641773_+	sodium:alanine symporter family protein	NA	NA	NA	NA
WP_006247895.1\|1641816_1642485_+	thermonuclease family protein	A0A0R6PHV6	Moraxella_phage	1.7e-30	37.3
WP_006250714.1\|1644572_1645490_-	HlyD family efflux transporter periplasmic adaptor subunit	NA	NA	NA	NA
WP_006250713.1\|1645486_1645834_-	hypothetical protein	NA	NA	NA	NA
WP_015484678.1\|1646506_1647157_-	hypothetical protein	NA	NA	NA	NA
WP_075270689.1\|1647146_1647485_-	hypothetical protein	NA	NA	NA	NA
WP_006249206.1\|1648181_1648385_-	hypothetical protein	NA	NA	NA	NA
WP_006249207.1\|1648396_1648645_-	hypothetical protein	NA	NA	NA	NA
WP_006251851.1\|1649079_1649265_-	hypothetical protein	NA	NA	NA	NA
WP_006251853.1\|1649824_1650043_-	hypothetical protein	NA	NA	NA	NA
WP_006251854.1\|1650646_1651843_+	cysteine desulfurase	A0A1V0SL42	Klosneuvirus	8.1e-23	25.9
WP_006251855.1\|1651949_1652924_+	6-phosphofructokinase	NA	NA	NA	NA
WP_006249214.1\|1652991_1653699_+	YwiC-like family protein	NA	NA	NA	NA
WP_006251857.1\|1653743_1655195_-\|tRNA	tRNA 4-thiouridine(8) synthase ThiI	NA	NA	NA	NA
WP_032844896.1\|1655309_1656170_-	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	A0A249XZQ2	Enterococcus_phage	2.6e-31	35.8
WP_006250049.1\|1656676_1657975_-	adenylosuccinate synthase	A0A285PX35	Cedratvirus	2.7e-72	36.4
WP_006250047.1\|1658148_1659036_-\|protease	protease modulator HflC	NA	NA	NA	NA
WP_006251657.1\|1659038_1660262_-\|protease	FtsH protease activity modulator HflK	NA	NA	NA	NA
WP_020824049.1\|1660452_1661103_-\|transposase	IS1595-like element ISMha4 family transposase	NA	NA	NA	NA
WP_006250045.1\|1661159_1661489_-	thioredoxin	A0A1J0GW78	Streptomyces_phage	2.0e-16	46.7
WP_142778024.1\|1662655_1665223_+	ATP-dependent chaperone ClpB	H6X3M6	Enterobacteria_phage	4.9e-126	34.1
WP_100067206.1\|1665163_1665346_-	hypothetical protein	NA	NA	NA	NA
WP_006251668.1\|1665436_1666579_+	5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase	A0A218MNE0	uncultured_virus	1.5e-162	70.5
WP_006251672.1\|1668183_1669083_-	cytidine deaminase	NA	NA	NA	NA
WP_006251674.1\|1669096_1669999_-	DMT family transporter	NA	NA	NA	NA
WP_006249772.1\|1669995_1670352_-	dihydroneopterin aldolase	NA	NA	NA	NA
WP_006249773.1\|1670421_1671027_+	glycerol-3-phosphate 1-O-acyltransferase PlsY	NA	NA	NA	NA
WP_006251675.1\|1671100_1673008_-	DNA topoisomerase IV subunit B	G3M9Z3	Bacillus_virus	2.6e-92	34.8
WP_142778025.1\|1673301_1674480_+	DNA methyltransferase	A0A1B0XVT8	Campylobacter_phage	8.5e-25	35.9
WP_020824074.1\|1674558_1675599_+\|transposase	IS481 family transposase	A0A0M3LS26	Mannheimia_phage	1.4e-201	100.0
WP_020824163.1\|1675814_1676237_+	DUF417 family protein	NA	NA	NA	NA
WP_020824074.1\|1677721_1678762_-\|transposase	IS481 family transposase	A0A0M3LS26	Mannheimia_phage	1.4e-201	100.0

DBSCAN-SWA_6

1920221 : 1969178

Mannheimia_phage(58.7%)

transposase,holin,tail,portal,integrase,protease,terminase

attL 1921335:1921350|attR 1967793:1967808

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_020824044.1\|1920221_1921262_+\|transposase	IS481 family transposase	A0A0M3LS26	Mannheimia_phage	4.2e-201	99.7
1921335:1921350	attL	NA	NA	NA	NA
WP_006247812.1\|1921531_1921825_-	hypothetical protein	A0A0M3LSV5	Mannheimia_phage	5.7e-47	99.0
WP_006247811.1\|1921968_1922358_+	diaminopimelate decarboxylase	NA	NA	NA	NA
WP_006247810.1\|1922329_1922629_+	XRE family transcriptional regulator	NA	NA	NA	NA
WP_020824044.1\|1922701_1923742_-\|transposase	IS481 family transposase	A0A0M3LS26	Mannheimia_phage	4.2e-201	99.7
WP_147009464.1\|1924013_1931147_-	DUF1983 domain-containing protein	A0A0M3LQ28	Mannheimia_phage	0.0e+00	96.9
WP_062627925.1\|1931149_1931740_-\|tail	tail assembly protein	A0A0M3LQ39	Mannheimia_phage	3.2e-97	93.4
WP_075271799.1\|1932008_1932740_-	C40 family peptidase	A0A0M3LQI5	Mannheimia_phage	8.7e-145	97.5
WP_147009465.1\|1932743_1933460_-\|tail	phage minor tail protein L	A0A0M3LSQ5	Mannheimia_phage	1.5e-133	97.9
WP_020824199.1\|1933459_1933789_-\|tail	phage tail protein	A0A2R9YJM0	Escherichia_phage	5.3e-17	38.9
WP_020824200.1\|1933788_1937340_-\|tail	phage tail tape measure protein	A0A125RN77	Pseudomonas_phage	1.2e-34	35.4
WP_020824201.1\|1937393_1937621_-	hypothetical protein	NA	NA	NA	NA
WP_020824202.1\|1937683_1937914_-	DUF4035 domain-containing protein	NA	NA	NA	NA
WP_020824203.1\|1937958_1938360_-	hypothetical protein	NA	NA	NA	NA
WP_020824204.1\|1938442_1939084_-	hypothetical protein	NA	NA	NA	NA
WP_020824205.1\|1939111_1939504_-\|tail	phage tail protein	NA	NA	NA	NA
WP_020824206.1\|1939500_1940025_-\|tail	tail protein	M9NZH5	Enterobacteria_phage	4.2e-16	38.1
WP_020824207.1\|1940028_1940331_-\|tail	phage tail protein	NA	NA	NA	NA
WP_020824208.1\|1940323_1940647_-	DUF2190 family protein	K7PLV6	Enterobacteria_phage	2.7e-13	37.4
WP_020824209.1\|1940899_1942861_-\|protease	Clp protease ClpP	A0A1W6JT88	Pseudomonas_phage	1.7e-198	55.2
WP_020824210.1\|1943264_1944461_-	hypothetical protein	NA	NA	NA	NA
WP_020824211.1\|1944464_1945976_-\|portal	phage portal protein	S5MW34	Escherichia_phage	3.7e-158	56.1
WP_015484701.1\|1945975_1946200_-	hypothetical protein	NA	NA	NA	NA
WP_142778020.1\|1946196_1948308_-\|terminase	phage terminase large subunit family protein	A5LH27	Enterobacteria_phage	3.2e-272	67.6
WP_020824213.1\|1948307_1948787_-	DUF1441 family protein	K7PJY2	Enterobacterial_phage	1.2e-41	58.0
WP_015484698.1\|1949056_1949206_-	hypothetical protein	A0A0M3LSZ0	Mannheimia_phage	2.0e-19	85.7
WP_020824214.1\|1949255_1949585_-	DUF2570 domain-containing protein	A0A0M3LPB1	Mannheimia_phage	2.8e-26	100.0
WP_020824215.1\|1949585_1950179_-	glycoside hydrolase family 19 protein	A0A0M3LPP0	Mannheimia_phage	8.2e-109	97.0
WP_031200637.1\|1950168_1950513_-\|holin	phage holin, lambda family	A0A0M3LNX1	Mannheimia_phage	2.6e-59	100.0
WP_006251707.1\|1950860_1951046_-	hypothetical protein	A0A0M3LQD0	Mannheimia_phage	5.2e-30	100.0
WP_006251708.1\|1951554_1951749_+	hypothetical protein	A0A0M3LS93	Mannheimia_phage	2.0e-11	61.9
WP_006252752.1\|1951716_1952157_-	hypothetical protein	A0A0M3LR87	Mannheimia_phage	6.4e-42	63.0
WP_020824218.1\|1952146_1952506_-	RusA family crossover junction endodeoxyribonuclease	A0A0M3LPZ2	Mannheimia_phage	1.3e-13	33.9
WP_020824219.1\|1952498_1953527_-	DUF968 domain-containing protein	S5MW46	Escherichia_phage	5.3e-47	36.7
WP_061888639.1\|1953653_1954247_-	adenine methyltransferase	A0A0M3LNW2	Mannheimia_phage	4.8e-93	81.6
WP_020824125.1\|1954257_1955304_-	hypothetical protein	M4SQA9	Psychrobacter_phage	1.1e-23	52.6
WP_006252350.1\|1955300_1956140_-	hypothetical protein	A0A2H4J5H6	uncultured_Caudovirales_phage	2.2e-27	37.4
WP_006252483.1\|1956315_1956576_-	hypothetical protein	A0A0M3LTF5	Mannheimia_phage	6.2e-37	97.7
WP_006248825.1\|1956596_1956797_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_006252485.1\|1956927_1957611_+	hypothetical protein	K7PKK1	Enterobacteria_phage	1.4e-19	31.1
WP_006248823.1\|1957685_1958066_+	hypothetical protein	A0A0M3LQX0	Mannheimia_phage	1.6e-73	100.0
WP_147009466.1\|1958058_1958556_+	hypothetical protein	A0A0M3LP99	Mannheimia_phage	1.4e-45	98.9
WP_006250075.1\|1958686_1958869_+	type II toxin-antitoxin system HicA family toxin	A0A0M3LQ86	Mannheimia_phage	3.6e-07	51.7
WP_006250984.1\|1958907_1959327_+	type II toxin-antitoxin system HicB family antitoxin	Q7Y3V7	Yersinia_phage	8.5e-28	48.9
WP_006250985.1\|1959393_1959699_-	HigA family addiction module antidote protein	A0A0M3LPV0	Mannheimia_phage	8.6e-54	99.0
WP_006250986.1\|1959707_1959983_-	plasmid maintenance system killer	A0A0M3LQB1	Mannheimia_phage	1.7e-48	100.0
WP_006250987.1\|1960272_1960503_+	hypothetical protein	A0A0M3LQL0	Mannheimia_phage	2.5e-37	98.7
WP_006250988.1\|1960981_1961305_-	hypothetical protein	NA	NA	NA	NA
WP_020824222.1\|1961497_1961683_+	hypothetical protein	NA	NA	NA	NA
WP_006253113.1\|1961836_1962295_+	single-stranded DNA-binding protein	F8TUL2	EBPR_podovirus	9.3e-36	48.7
WP_006250991.1\|1962330_1962690_+	hypothetical protein	A0A192Y6G0	Salmonella_phage	2.8e-19	51.5
WP_020824224.1\|1962761_1963565_+	YfdQ family protein	I3PUY7	Vibrio_phage	1.2e-49	40.1
WP_020824225.1\|1963658_1964093_+	hypothetical protein	S4T7U9	Vibrio_phage	1.6e-05	39.1
WP_020824226.1\|1964102_1964591_+	DUF551 domain-containing protein	A0A0M3LS47	Mannheimia_phage	6.0e-65	74.1
WP_020824227.1\|1964611_1964821_+	hypothetical protein	NA	NA	NA	NA
WP_006248807.1\|1964967_1965093_+	Com family DNA-binding transcriptional regulator	NA	NA	NA	NA
WP_020824228.1\|1965139_1965982_+	hypothetical protein	F6MIM2	Haemophilus_phage	6.8e-109	66.5
WP_020824134.1\|1966044_1966428_+	hypothetical protein	A0A0M3LPT1	Mannheimia_phage	9.1e-69	99.2
WP_020824229.1\|1966477_1966753_+	DUF4224 domain-containing protein	A0A0M3LNT7	Mannheimia_phage	1.2e-46	100.0
WP_006251368.1\|1966712_1967768_+\|integrase	tyrosine-type recombinase/integrase	A0A0M3LS39	Mannheimia_phage	2.8e-200	100.0
WP_006249908.1\|1967915_1969178_-	serine hydroxymethyltransferase	A0A240F3L3	Aeromonas_phage	6.9e-97	51.9
1967793:1967808	attR	NA	NA	NA	NA

DBSCAN-SWA_7

2250702 : 2343846

112

Mannheimia_phage(91.14%)

transposase,holin,tRNA,tail,integrase,terminase

attL 2255839:2255898|attR 2336390:2337590

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_020824074.1\|2250702_2251743_+\|transposase	IS481 family transposase	A0A0M3LS26	Mannheimia_phage	1.4e-201	100.0
WP_115262524.1\|2251782_2252232_-	hypothetical protein	NA	NA	NA	NA
WP_006251957.1\|2252974_2253262_+	hypothetical protein	NA	NA	NA	NA
WP_006252627.1\|2253385_2253709_+	hypothetical protein	NA	NA	NA	NA
WP_006251963.1\|2254903_2255110_+	hypothetical protein	NA	NA	NA	NA
2255839:2255898	attL	NA	NA	NA	NA
WP_020824074.1\|2255896_2256937_-\|transposase	IS481 family transposase	A0A0M3LS26	Mannheimia_phage	1.4e-201	100.0
WP_020824277.1\|2257020_2257974_-	TIGR03571 family LLM class oxidoreductase	NA	NA	NA	NA
WP_006251368.1\|2258225_2259281_-\|integrase	tyrosine-type recombinase/integrase	A0A0M3LS39	Mannheimia_phage	2.8e-200	100.0
WP_020824229.1\|2259240_2259516_-	DUF4224 domain-containing protein	A0A0M3LNT7	Mannheimia_phage	1.2e-46	100.0
WP_061888666.1\|2259605_2260112_-	hypothetical protein	A0A0M3LPK6	Mannheimia_phage	8.8e-96	100.0
WP_081107633.1\|2260089_2260686_-	hypothetical protein	A0A0M3LP83	Mannheimia_phage	2.1e-112	100.0
WP_142777847.1\|2260606_2261926_-	hypothetical protein	A0A0M3LNT4	Mannheimia_phage	2.7e-261	100.0
WP_061888667.1\|2261922_2262828_-	SAM-dependent methyltransferase	A0A0M3LQ47	Mannheimia_phage	4.4e-170	100.0
WP_062627972.1\|2263061_2263739_-	antirepressor	A0A0M3LQ72	Mannheimia_phage	6.1e-60	93.9
WP_006248800.1\|2263986_2264826_-	KilA-N domain-containing protein	Q4ZC41	Staphylococcus_virus	1.6e-73	52.9
WP_006248797.1\|2265055_2265433_+	hypothetical protein	NA	NA	NA	NA
WP_006253371.1\|2265564_2265753_+	hypothetical protein	A0A0M3LSW7	Mannheimia_phage	4.5e-29	100.0
WP_006250263.1\|2265756_2266221_-	hypothetical protein	A0A0M3LTD8	Mannheimia_phage	5.3e-87	100.0
WP_006250262.1\|2266204_2266408_-	hypothetical protein	A0A0M3LPT5	Mannheimia_phage	1.0e-31	100.0
WP_061888670.1\|2266404_2266896_-	DUF551 domain-containing protein	A0A0M3LS47	Mannheimia_phage	1.3e-83	100.0
WP_142777854.1\|2266940_2267393_-	pyruvate kinase	A0A0M3LNU4	Mannheimia_phage	1.3e-85	100.0
WP_147009080.1\|2267420_2268266_-	hypothetical protein	A0A0M3LPL3	Mannheimia_phage	1.1e-53	74.0
WP_032848956.1\|2268306_2268969_-	translocation protein TolB precursor	A0A0M3LP90	Mannheimia_phage	4.5e-124	100.0
WP_020824131.1\|2268961_2269885_-	hypothetical protein	A0A0M3LNU3	Mannheimia_phage	2.9e-169	100.0
WP_020824130.1\|2269897_2270110_-	hypothetical protein	A0A0M3LQ55	Mannheimia_phage	8.9e-34	100.0
WP_006250951.1\|2270243_2270723_-	hypothetical protein	A0A0M3LQ82	Mannheimia_phage	1.3e-75	100.0
WP_006250254.1\|2270719_2271079_-	hypothetical protein	A0A0M3LSX3	Mannheimia_phage	4.5e-62	100.0
WP_006252958.1\|2271082_2271589_-	hypothetical protein	A0A0M3LTE5	Mannheimia_phage	7.0e-85	90.5
WP_006251561.1\|2272256_2272529_+	hypothetical protein	A0A0M3LS55	Mannheimia_phage	1.5e-46	100.0
WP_061888676.1\|2272506_2272776_-	hypothetical protein	A0A0M3LNV4	Mannheimia_phage	2.5e-41	100.0
WP_142782981.1\|2273357_2273855_-	hypothetical protein	A0A0M3LP99	Mannheimia_phage	3.7e-46	100.0
WP_006248823.1\|2273847_2274228_-	hypothetical protein	A0A0M3LQX0	Mannheimia_phage	1.6e-73	100.0
WP_075271714.1\|2274241_2274928_-	helix-turn-helix transcriptional regulator	A0A0M3LQ62	Mannheimia_phage	3.9e-131	100.0
WP_032848913.1\|2275056_2275290_+	antirepressor protein Cro	A0A0M3LQ90	Mannheimia_phage	1.5e-37	100.0
WP_061888658.1\|2275446_2275689_+	hypothetical protein	A0A0M3LR73	Mannheimia_phage	4.7e-39	100.0
WP_061888659.1\|2276174_2276459_+	hypothetical protein	A0A0M3LS90	Mannheimia_phage	7.0e-50	98.9
WP_061888657.1\|2276458_2277106_+	replication protein	A0A0M3LS65	Mannheimia_phage	4.7e-118	100.0
WP_006251735.1\|2277102_2277675_+	N-6-adenine methyltransferase	A0A0M3LNW2	Mannheimia_phage	1.6e-109	100.0
WP_032849027.1\|2277793_2278246_+	DUF1367 family protein	A0A0M3LPN2	Mannheimia_phage	6.9e-84	100.0
WP_032849029.1\|2278295_2278508_+	hypothetical protein	A0A0M3LPA2	Mannheimia_phage	1.1e-31	100.0
WP_021280054.1\|2278884_2279169_+	DUF1364 domain-containing protein	A0A0M3LQ97	Mannheimia_phage	1.4e-50	100.0
WP_021280055.1\|2279165_2279534_+	RusA family crossover junction endodeoxyribonuclease	A0A0M3LPZ2	Mannheimia_phage	1.6e-67	100.0
WP_006252250.1\|2279523_2279889_+	hypothetical protein	A0A0M3LR87	Mannheimia_phage	1.6e-62	100.0
WP_021280056.1\|2279856_2280051_-	hypothetical protein	A0A0M3LS93	Mannheimia_phage	4.8e-26	100.0
WP_006252253.1\|2280567_2281146_-	hypothetical protein	A0A0M3LS77	Mannheimia_phage	2.6e-107	100.0
WP_031200637.1\|2281264_2281609_+\|holin	phage holin, lambda family	A0A0M3LNX1	Mannheimia_phage	2.6e-59	100.0
WP_020824215.1\|2281598_2282192_+	glycoside hydrolase family 19 protein	A0A0M3LPP0	Mannheimia_phage	8.2e-109	97.0
WP_006252032.1\|2282192_2282543_+	DUF2570 domain-containing protein	A0A0M3LPB1	Mannheimia_phage	2.0e-30	100.0
WP_075271814.1\|2282571_2282712_+	lytic transglycosylase	A0A0M3LNX0	Mannheimia_phage	1.8e-19	95.7
WP_006251710.1\|2282712_2282970_+	hypothetical protein	A0A0M3LQ80	Mannheimia_phage	1.2e-45	100.0
WP_006251235.1\|2283336_2283861_+\|terminase	terminase small subunit	A0A0M3LS14	Mannheimia_phage	1.7e-89	100.0
WP_006251234.1\|2283844_2285065_+\|terminase	PBSX family phage terminase large subunit	A0A0M3LNR4	Mannheimia_phage	4.9e-241	100.0
WP_006251233.1\|2285061_2286438_+	DUF1073 domain-containing protein	A0A0M3LPQ5	Mannheimia_phage	4.3e-262	100.0
WP_015587047.1\|2286391_2287330_+	hypothetical protein	A0A0M3LQH2	Mannheimia_phage	2.6e-170	100.0
WP_015587048.1\|2287316_2288687_+	hypothetical protein	A0A0M3LQ78	Mannheimia_phage	1.2e-243	100.0
WP_006251230.1\|2288679_2289114_+	hypothetical protein	A0A0M3LPQ2	Mannheimia_phage	8.7e-76	100.0
WP_062627922.1\|2289128_2290115_+	encapsulating for peroxidase	A0A0M3LQZ1	Mannheimia_phage	1.4e-185	99.7
WP_075271287.1\|2290126_2290360_+	hypothetical protein	A0A0M3LR32	Mannheimia_phage	3.3e-21	100.0
WP_006251227.1\|2290362_2290740_+	hypothetical protein	A0A0M3LQS8	Mannheimia_phage	7.3e-63	100.0
WP_006251226.1\|2290739_2291084_+	hypothetical protein	A0A0M3LSC9	Mannheimia_phage	2.2e-61	100.0
WP_006251225.1\|2291085_2291454_+	hypothetical protein	A0A0M3LSU9	Mannheimia_phage	4.8e-59	100.0
WP_006251224.1\|2291450_2291831_+	hypothetical protein	A0A0M3LTB0	Mannheimia_phage	7.1e-66	100.0
WP_006251223.1\|2291834_2292317_+\|tail	phage tail protein	A0A0M3LPR0	Mannheimia_phage	2.3e-85	100.0
WP_006251222.1\|2292356_2292773_-	type II toxin-antitoxin system HicB family antitoxin	A0A0M3LQH7	Mannheimia_phage	4.3e-72	100.0
WP_006251221.1\|2292828_2293005_-	type II toxin-antitoxin system HicA family toxin	A0A0M3LQ86	Mannheimia_phage	3.3e-26	100.0
WP_006251220.1\|2293101_2293773_+	hypothetical protein	A0A0M3LPR4	Mannheimia_phage	2.8e-121	100.0
WP_020824316.1\|2293787_2294021_-	hypothetical protein	A0A0M3LQZ8	Mannheimia_phage	7.0e-40	100.0
WP_006251218.1\|2294189_2294648_+	hypothetical protein	A0A0M3LR40	Mannheimia_phage	1.2e-78	100.0
WP_006251217.1\|2294715_2295111_+	hypothetical protein	A0A0M3LR23	Mannheimia_phage	3.1e-64	100.0
WP_147009468.1\|2295197_2297687_+\|tail	tail length tape measure protein	A0A0M3LSE2	Mannheimia_phage	0.0e+00	99.6
WP_006251215.1\|2297690_2298020_+\|tail	phage tail protein	A0A0M3LSV3	Mannheimia_phage	1.4e-57	100.0
WP_020849872.1\|2298041_2298488_+\|tail	phage minor tail protein L	A0A0M3LTB9	Mannheimia_phage	3.9e-79	100.0
WP_142778104.1\|2298495_2299212_+\|tail	phage minor tail protein L	A0A0M3LPJ6	Mannheimia_phage	3.6e-135	98.7
WP_020824197.1\|2299215_2299947_+	C40 family peptidase	A0A0M3LP75	Mannheimia_phage	1.8e-145	98.8
WP_020824196.1\|2300215_2300806_+\|tail	tail assembly protein	A0A0M3LQ39	Mannheimia_phage	1.8e-103	100.0
WP_100067196.1\|2306672_2307116_+	hypothetical protein	A0A0M3LS02	Mannheimia_phage	4.7e-77	99.3
WP_006250517.1\|2307116_2307716_+	hypothetical protein	A0A0M3LR33	Mannheimia_phage	7.5e-110	100.0
WP_006250518.1\|2307831_2308125_+	hypothetical protein	A0A0M3LS64	Mannheimia_phage	7.5e-47	99.0
WP_147009469.1\|2308409_2309252_-	MBL fold metallo-hydrolase	NA	NA	NA	NA
WP_006252246.1\|2309382_2309973_+	TetR family transcriptional regulator	NA	NA	NA	NA
WP_006252245.1\|2310038_2310917_-	zinc-dependent alcohol dehydrogenase family protein	NA	NA	NA	NA
WP_006252244.1\|2311130_2312048_-	DMT family transporter	NA	NA	NA	NA
WP_006252243.1\|2312183_2312843_-	NAD(P)H-dependent oxidoreductase	NA	NA	NA	NA
WP_020824276.1\|2313027_2314092_-	NADH:flavin oxidoreductase/NADH oxidase	NA	NA	NA	NA
WP_006252239.1\|2315000_2315552_-	NAD(P)H-dependent oxidoreductase	NA	NA	NA	NA
WP_006252238.1\|2315743_2317105_+	patatin-like phospholipase family protein	NA	NA	NA	NA
WP_006252237.1\|2317152_2317650_-	ribonuclease E activity regulator RraA	NA	NA	NA	NA
WP_006252234.1\|2318759_2319722_+	23S rRNA pseudouridine(955/2504/2580) synthase RluC	NA	NA	NA	NA
WP_006248541.1\|2319830_2320688_+	dihydropteroate synthase	S4W084	Pandoravirus	6.2e-17	27.9
WP_006248542.1\|2320687_2321035_+	ArsC family reductase	NA	NA	NA	NA
WP_020824275.1\|2321164_2322313_+	succinyl-diaminopimelate desuccinylase	NA	NA	NA	NA
WP_020824274.1\|2322423_2323758_+	sodium:proton antiporter	A0A2H4J178	uncultured_Caudovirales_phage	1.1e-41	40.4
WP_041447977.1\|2323866_2324463_+	YeeE/YedE family protein	NA	NA	NA	NA
WP_100067210.1\|2324447_2324894_+	YeeE/YedE family protein	NA	NA	NA	NA
WP_006248546.1\|2324915_2325137_+	sulfurtransferase TusA family protein	NA	NA	NA	NA
WP_006248547.1\|2325199_2326708_-	catalase	A0A2K9L0T1	Tupanvirus	8.8e-99	47.6
WP_142778012.1\|2326995_2328135_-	molecular chaperone DnaJ	E3T4P7	Cafeteria_roenbergensis_virus	5.4e-24	28.1
WP_006252924.1\|2328300_2328603_-	hypothetical protein	NA	NA	NA	NA
WP_006252227.1\|2328744_2330643_-	molecular chaperone DnaK	A0A0N9QXN8	Chrysochromulina_ericina_virus	5.6e-151	50.4
WP_006248552.1\|2330900_2331239_+	nitrogen regulatory protein P-II 2	NA	NA	NA	NA
WP_020824273.1\|2332159_2332390_+	membrane protein	NA	NA	NA	NA
WP_020824272.1\|2332896_2333154_+	hypothetical protein	NA	NA	NA	NA
WP_006252223.1\|2333369_2335112_+	autotransporter	NA	NA	NA	NA
WP_020824074.1\|2335350_2336391_+\|transposase	IS481 family transposase	A0A0M3LS26	Mannheimia_phage	1.4e-201	100.0
WP_006251102.1\|2337277_2338423_-	FMN-dependent L-lactate dehydrogenase LldD	NA	NA	NA	NA
2336390:2337590	attR	NA	NA	NA	NA
WP_006248521.1\|2339034_2339679_+	RNA pyrophosphohydrolase	NA	NA	NA	NA
WP_006248520.1\|2339680_2340469_+	sulfite exporter TauE/SafE family protein	NA	NA	NA	NA
WP_006251103.1\|2340476_2341274_+	prolipoprotein diacylglyceryl transferase	NA	NA	NA	NA
WP_006248518.1\|2341360_2342029_+	phosphoglycolate phosphatase	NA	NA	NA	NA
WP_006248517.1\|2342098_2342359_+	AbrB/MazE/SpoVT family DNA-binding domain-containing protein	NA	NA	NA	NA
WP_006248516.1\|2342355_2342688_+	type II toxin-antitoxin system PemK/MazF family toxin	A9D9Y1	Lactobacillus_prophage	3.8e-07	33.9
WP_006248514.1\|2342814_2343846_+\|tRNA	tryptophan--tRNA ligase	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP017513

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection