CRISPRimmunity

Please click to download your results

Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Prophage number
NZ_CP042420	Leuconostoc lactis strain CBA3622 chromosome, complete genome	0 crisprs	cas3,csa3,DEDDh	5
NZ_CP042422	Leuconostoc lactis strain CBA3622 plasmid unnamed2, complete sequence	0 crisprs	NA	0
NZ_CP042421	Leuconostoc lactis strain CBA3622 plasmid unnamed1, complete sequence	0 crisprs	NA	0
NZ_CP042423	Leuconostoc lactis strain CBA3622 plasmid unnamed3	0 crisprs	NA	0

Results visualization

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

134651 : 147853

Bacillus_phage(22.22%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_055307560.1\|134651_135422_-	phosphate ABC transporter ATP-binding protein	A0A1V0SJ29	Klosneuvirus	2.9e-13	26.7
WP_010001785.1\|135418_136258_-	phosphate ABC transporter ATP-binding protein	F2Y302	Organic_Lake_phycodnavirus	1.3e-11	29.3
WP_055307559.1\|136349_137234_-	phosphate ABC transporter permease PstA	NA	NA	NA	NA
WP_029509636.1\|137233_138157_-	phosphate ABC transporter permease subunit PstC	NA	NA	NA	NA
WP_147001667.1\|138240_139134_-	phosphate ABC transporter substrate-binding protein PstS family protein	M4QRU1	Synechococcus_phage	1.0e-06	29.0
WP_147001668.1\|139239_140595_-	histidine kinase	W8CYF6	Bacillus_phage	6.2e-27	34.5
WP_147001669.1\|140663_141572_-	phosphate ABC transporter substrate-binding protein PstS family protein	H6WG65	Cyanophage	2.7e-10	27.0
WP_010001777.1\|141750_142440_-	response regulator transcription factor	Q56AR1	Bacillus_thuringiensis_phage	8.0e-07	33.0
WP_147001670.1\|142554_143700_-	recombinase RecA	A0A0S2MVG1	Bacillus_phage	1.2e-116	65.3
WP_055307552.1\|143833_144415_-	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA
WP_147001671.1\|144424_145303_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_147001672.1\|145316_146588_-	insulinase family protein	A0A2K9V7S4	Bandra_megavirus	4.3e-14	30.7
WP_055307549.1\|146584_147853_-	insulinase family protein	A0A1X9I714	Streptococcus_phage	9.4e-46	31.5

DBSCAN-SWA_2

353937 : 363133

Streptococcus_phage(57.14%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_055307390.1\|353937_354705_-	pyrroline-5-carboxylate reductase	A0A1X9I6T5	Streptococcus_phage	2.8e-24	32.8
WP_010001492.1\|354751_355396_-	deoxynucleoside kinase	C1KFI3	Lactobacillus_virus	1.0e-48	45.7
WP_029509497.1\|355827_356820_-	UDP-glucose 4-epimerase GalE	A0A2K9L1R4	Tupanvirus	1.1e-49	35.9
WP_055307389.1\|356865_357597_-	acyl-ACP thioesterase	NA	NA	NA	NA
WP_055307388.1\|357637_358513_-	16S rRNA (cytidine(1402)-2'-O)-methyltransferase	M1PLC5	Streptococcus_phage	5.5e-77	55.3
WP_055307387.1\|358514_359435_-	DNA polymerase III subunit delta	M1NSC1	Streptococcus_phage	3.1e-06	25.2
WP_010001486.1\|359434_359764_-	hypothetical protein	NA	NA	NA	NA
WP_055307386.1\|359760_360414_-	dTMP kinase	M1PSC7	Streptococcus_phage	2.7e-52	51.4
WP_010004630.1\|360461_360722_-	YaaL family protein	NA	NA	NA	NA
WP_010001482.1\|360718_361324_-	recombination protein RecR	NA	NA	NA	NA
WP_055307385.1\|361360_363133_-	DNA polymerase III subunit gamma/tau	A0A1U9WR94	Streptococcus_virus	3.2e-52	42.2

DBSCAN-SWA_3

1306427 : 1314125

Staphylococcus_phage(66.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_147001867.1\|1306427_1307486_+	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	A0A2H4PQS8	Staphylococcus_phage	7.7e-33	31.6
WP_055307953.1\|1307449_1308046_+	riboflavin synthase	A0A2H4PQS5	Staphylococcus_phage	5.1e-26	40.8
WP_055307952.1\|1308038_1309232_+	bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II	A0A2H4PQS2	Staphylococcus_phage	2.6e-85	43.2
WP_055307951.1\|1309244_1309724_+	6,7-dimethyl-8-ribityllumazine synthase	A0A2H4PQS3	Staphylococcus_phage	4.8e-27	44.3
WP_055307950.1\|1309892_1310933_+	LLM class flavin-dependent oxidoreductase	NA	NA	NA	NA
WP_055307949.1\|1310935_1311625_+	NAD(P)-binding domain-containing protein	NA	NA	NA	NA
WP_055307948.1\|1311661_1312261_+	aminodeoxychorismate/anthranilate synthase component II	A0A0P0IKJ1	Acinetobacter_phage	3.5e-35	40.8
WP_055307947.1\|1312247_1314125_+	aminodeoxychorismate synthase component I	S4VT78	Pandoravirus	1.2e-36	31.9

DBSCAN-SWA_4

1367061 : 1411922

Streptococcus_phage(20.0%)

protease,bacteriocin,transposase,holin

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_055307902.1\|1367061_1367370_+\|bacteriocin	bacteriocin immunity protein	NA	NA	NA	NA
WP_055307901.1\|1367487_1367919_+	hypothetical protein	NA	NA	NA	NA
WP_055307900.1\|1368121_1369111_-	LacI family transcriptional regulator	NA	NA	NA	NA
WP_055307899.1\|1369281_1370625_+	SLC45 family MFS transporter	NA	NA	NA	NA
WP_055307898.1\|1370640_1372323_+	alpha-glucosidase	NA	NA	NA	NA
WP_055307897.1\|1372379_1373219_-	hypothetical protein	NA	NA	NA	NA
WP_055307896.1\|1373485_1373731_+	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA
WP_055307895.1\|1373874_1375413_+	ClC family H(+)/Cl(-) exchange transporter	NA	NA	NA	NA
WP_147001880.1\|1375531_1377472_+	hypothetical protein	NA	NA	NA	NA
WP_055307893.1\|1377652_1378054_+	acetyl-CoA carboxylase	NA	NA	NA	NA
WP_147001881.1\|1378053_1379382_+	acetyl-CoA carboxylase biotin carboxylase subunit	NA	NA	NA	NA
WP_055307890.1\|1380168_1380933_+	LamB/YcsF family protein	NA	NA	NA	NA
WP_055307889.1\|1380938_1382171_+	divalent metal cation transporter	NA	NA	NA	NA
WP_055307888.1\|1382182_1382899_+	5-oxoprolinase subunit PxpB	NA	NA	NA	NA
WP_055307887.1\|1382895_1383909_+	biotin-dependent carboxyltransferase family protein	NA	NA	NA	NA
WP_055307886.1\|1384210_1384708_+	hypothetical protein	NA	NA	NA	NA
WP_055307885.1\|1384830_1385397_+	hypothetical protein	NA	NA	NA	NA
WP_055307884.1\|1385803_1386241_+	CidA/LrgA family protein	NA	NA	NA	NA
WP_055307883.1\|1386233_1386980_+\|holin	antiholin LrgB	NA	NA	NA	NA
WP_055307882.1\|1387160_1387835_+\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA
WP_055307881.1\|1388397_1389246_+	methionine ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_048699725.1\|1390425_1390731_+\|transposase	transposase	NA	NA	NA	NA
WP_055307687.1\|1390727_1391606_+\|transposase	IS3 family transposase	NA	NA	NA	NA
WP_055307686.1\|1391863_1392070_+	hypothetical protein	NA	NA	NA	NA
WP_147001882.1\|1393663_1393999_+	hypothetical protein	NA	NA	NA	NA
WP_147001883.1\|1393985_1394330_+	hypothetical protein	NA	NA	NA	NA
WP_147001884.1\|1394322_1394580_+	hypothetical protein	NA	NA	NA	NA
WP_147001885.1\|1394954_1395851_+	hypothetical protein	NA	NA	NA	NA
WP_147001886.1\|1395911_1397288_+	cell division protein FtsK	A0A1S5SFB5	Streptococcus_phage	1.9e-39	30.0
WP_147001887.1\|1397287_1397599_+	hypothetical protein	NA	NA	NA	NA
WP_147001888.1\|1397889_1398186_+	hypothetical protein	NA	NA	NA	NA
WP_147001889.1\|1398572_1400201_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_147001890.1\|1400203_1400389_+	hypothetical protein	NA	NA	NA	NA
WP_147001891.1\|1400458_1401943_+	phytoene desaturase	NA	NA	NA	NA
WP_147001892.1\|1401943_1402822_+	squalene/phytoene synthase family protein	NA	NA	NA	NA
WP_147001893.1\|1402861_1403908_+	FtsX-like permease family protein	NA	NA	NA	NA
WP_029510451.1\|1403912_1404587_+	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	3.9e-30	38.4
WP_147001894.1\|1405090_1406518_+	deoxyribodipyrimidine photo-lyase	A0A1V0SGL1	Hokovirus	1.4e-69	34.9
WP_147001895.1\|1406742_1407237_+	NUDIX domain-containing protein	NA	NA	NA	NA
WP_147001896.1\|1407399_1408362_-	D-2-hydroxyacid dehydrogenase	A0A1V0SBV6	Catovirus	9.4e-30	30.9
WP_147001897.1\|1408564_1408972_+	hypothetical protein	NA	NA	NA	NA
WP_147001898.1\|1409020_1410553_+	ClC family H(+)/Cl(-) exchange transporter	NA	NA	NA	NA
WP_147001899.1\|1410743_1411922_+\|transposase	IS30 family transposase	H7BVY4	unidentified_phage	1.0e-22	29.7

DBSCAN-SWA_5

1527635 : 1574448

Leuconostoc_phage(44.0%)

integrase,transposase,holin,tRNA

attL 1546261:1546277|attR 1581088:1581104

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_055307764.1\|1527635_1528763_-\|tRNA	tRNA-dihydrouridine synthase	NA	NA	NA	NA
WP_010000588.1\|1528846_1530172_-	bifunctional folylpolyglutamate synthase/dihydrofolate synthase	NA	NA	NA	NA
WP_055307763.1\|1530268_1530979_-	glycerophosphodiester phosphodiesterase	NA	NA	NA	NA
WP_147001918.1\|1530988_1532341_-	extracellular solute-binding protein	NA	NA	NA	NA
WP_055307761.1\|1532337_1533159_-	carbohydrate ABC transporter permease	NA	NA	NA	NA
WP_055307760.1\|1533155_1534085_-	sugar ABC transporter permease	NA	NA	NA	NA
WP_055307759.1\|1534086_1535142_-	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	4.3e-28	35.6
WP_147001919.1\|1535287_1536229_-	phosphoglycerate dehydrogenase	NA	NA	NA	NA
WP_055307757.1\|1536626_1537760_+	PTS sugar transporter subunit IIC	NA	NA	NA	NA
WP_010000593.1\|1537818_1538859_+	branched-chain amino acid aminotransferase	NA	NA	NA	NA
WP_055307756.1\|1539134_1539665_-	YutD family protein	NA	NA	NA	NA
WP_147001920.1\|1539688_1541038_-	bifunctional metallophosphatase/5'-nucleotidase	NA	NA	NA	NA
WP_055307754.1\|1541067_1541685_-	metallophosphatase	A0A288TXW7	Enterococcus_phage	3.9e-29	35.5
WP_055307753.1\|1541737_1542184_-	hypothetical protein	NA	NA	NA	NA
WP_055307752.1\|1542185_1543280_-	aminopeptidase P family protein	A0A0P0I8D7	Acinetobacter_phage	3.9e-16	29.0
WP_010000600.1\|1543396_1543714_-	50S ribosomal protein L27	NA	NA	NA	NA
WP_010000601.1\|1543742_1544042_-	50S ribosomal protein L21	NA	NA	NA	NA
WP_055307751.1\|1544196_1544772_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_010000604.1\|1544801_1545320_-	hypothetical protein	NA	NA	NA	NA
WP_048699725.1\|1546150_1546456_+\|transposase	transposase	NA	NA	NA	NA
1546261:1546277	attL	NA	NA	NA	NA
WP_055307687.1\|1546452_1547331_+\|transposase	IS3 family transposase	NA	NA	NA	NA
WP_055307686.1\|1547588_1547795_+	hypothetical protein	NA	NA	NA	NA
WP_147001921.1\|1548004_1549153_-	Fic family protein	D7RWK9	Brochothrix_phage	5.4e-117	55.9
WP_147001922.1\|1549374_1549848_-\|holin	holin	E3W8H7	Leuconostoc_phage	1.9e-52	88.5
WP_147001923.1\|1549857_1550961_-	1,4-beta-N-acetylmuramidase	E3W8H6	Leuconostoc_phage	4.1e-162	78.0
WP_095652997.1\|1550957_1551227_-	hypothetical protein	NA	NA	NA	NA
WP_147001924.1\|1551241_1554082_-	SGNH/GDSL hydrolase family protein	Q37959	Lactococcus_phage	3.1e-65	27.9
WP_147001925.1\|1554074_1555541_-	hypothetical protein	A0A1B2APX2	Phage_Wrath	3.9e-59	36.8
WP_147001926.1\|1555540_1556056_-	hypothetical protein	Q6SEC3	Lactobacillus_prophage	7.5e-26	38.7
WP_055307686.1\|1556184_1556391_-	hypothetical protein	NA	NA	NA	NA
WP_055307687.1\|1556648_1557527_-\|transposase	IS3 family transposase	NA	NA	NA	NA
WP_048699725.1\|1557523_1557829_-\|transposase	transposase	NA	NA	NA	NA
WP_147001927.1\|1558118_1558298_-	hypothetical protein	NA	NA	NA	NA
WP_147001928.1\|1558308_1559508_-	helix-turn-helix domain-containing protein	A0A097BYC5	Leuconostoc_phage	3.5e-199	85.4
WP_147001929.1\|1559510_1559690_-	hypothetical protein	NA	NA	NA	NA
WP_147001930.1\|1559799_1560444_-	hypothetical protein	NA	NA	NA	NA
WP_147001931.1\|1560522_1561146_-	DUF4145 domain-containing protein	Q20DE2	Lactobacillus_phage	1.1e-60	58.1
WP_147001987.1\|1562061_1562262_-	hypothetical protein	NA	NA	NA	NA
WP_055307729.1\|1562550_1562742_-	hypothetical protein	A0A097BYH8	Leuconostoc_phage	2.3e-28	95.2
WP_147001932.1\|1562738_1563020_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_147001988.1\|1563169_1563580_-	dTDP-glucose pyrophosphorylase	A0A2D1GPL1	Lactobacillus_phage	3.7e-20	45.7
WP_147001933.1\|1563569_1564271_-	hypothetical protein	A0A097BYG8	Leuconostoc_phage	5.1e-110	83.3
WP_029509777.1\|1564283_1564697_-	single-stranded DNA-binding protein	A0A097BYB0	Leuconostoc_phage	1.9e-56	78.1
WP_147001934.1\|1564683_1565307_-	hypothetical protein	D2JGK1	Staphylococcus_phage	3.0e-13	34.2
WP_147001936.1\|1565303_1566218_-	DUF1351 domain-containing protein	NA	NA	NA	NA
WP_147001937.1\|1566302_1566560_-	hypothetical protein	NA	NA	NA	NA
WP_147001989.1\|1566563_1567343_-	DNA replication protein	D7RWG1	Brochothrix_phage	7.3e-57	76.0
WP_147001938.1\|1567357_1567798_-	hypothetical protein	NA	NA	NA	NA
WP_147001940.1\|1567794_1567995_-	hypothetical protein	NA	NA	NA	NA
WP_055307716.1\|1567984_1568182_-	helix-turn-helix transcriptional regulator	A0A0A7RUJ5	Clostridium_phage	1.1e-06	44.4
WP_055307715.1\|1568181_1568421_-	hypothetical protein	A0A097BYE5	Leuconostoc_phage	1.8e-14	50.6
WP_048701061.1\|1568530_1568728_-	hypothetical protein	E3W8C1	Leuconostoc_phage	6.6e-07	45.5
WP_147001942.1\|1568819_1569395_+	hypothetical protein	NA	NA	NA	NA
WP_147001944.1\|1569440_1570211_-	phage repressor protein/antirepressor Ant	A0A0A7DMN4	Lactobacillus_phage	2.4e-84	60.3
WP_147001945.1\|1570294_1570531_-	helix-turn-helix transcriptional regulator	A0A097BYF3	Leuconostoc_phage	1.5e-34	100.0
WP_147001947.1\|1570684_1571377_+	helix-turn-helix domain-containing protein	A0A097BY95	Leuconostoc_phage	1.3e-126	98.7
WP_147001948.1\|1571444_1571984_+	hypothetical protein	NA	NA	NA	NA
WP_146975134.1\|1572049_1572427_+	PH domain-containing protein	NA	NA	NA	NA
WP_147001950.1\|1572543_1573611_+\|integrase	tyrosine-type recombinase/integrase	E3W8I1	Leuconostoc_phage	7.2e-140	68.9
WP_010000672.1\|1574247_1574448_-	cold-shock protein	Q9AZD3	Lactococcus_phage	3.9e-23	78.8
1581088:1581104	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage