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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP042273 Paenibacillus polymyxa strain ZF197 plasmid pAP197, complete sequence 0 crisprs NA 0 0 0 0
NZ_CP042272 Paenibacillus polymyxa strain ZF197 chromosome, complete genome 4 crisprs DEDDh,WYL,csa3,cas3,cas5,cas8c,cas7,cas4,cas1,cas2,DinG,RT 2 6 7 1

Results visualization

1. NZ_CP042272
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP042272_1 416864-417981 TypeI NA:I-C
16 spacers
cas3,cas5,cas8c,cas7,cas4,cas1,cas2

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP042272_2 427094-428158 TypeI NA
15 spacers
cas2,cas1,cas4,cas7,cas8c,cas5,cas3

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP042272_3 428526-429101 TypeI NA:I-C
8 spacers
cas2,cas1,cas4,cas7,cas8c,cas5,cas3

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP042272_4 3468553-3468636 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
NZ_CP042272_2 2.1|427127|36|NZ_CP042272|PILER-CR,CRISPRCasFinder,CRT 427127-427162 36 NZ_CP042272.1 32197-32232 0 1.0
NZ_CP042272_3 3.2|428626|38|NZ_CP042272|PILER-CR,CRT 428626-428663 38 NZ_CP042272.1 21077-21114 0 1.0

1. spacer 2.1|427127|36|NZ_CP042272|PILER-CR,CRISPRCasFinder,CRT matches to position: 32197-32232, mismatch: 0, identity: 1.0

ccctattaactaaaaaagttcggtctgatagtcaga	CRISPR spacer
ccctattaactaaaaaagttcggtctgatagtcaga	Protospacer
************************************

2. spacer 3.2|428626|38|NZ_CP042272|PILER-CR,CRT matches to position: 21077-21114, mismatch: 0, identity: 1.0

tccacccaaatcctgcacttcgaccagccgaacgtttg	CRISPR spacer
tccacccaaatcctgcacttcgaccagccgaacgtttg	Protospacer
**************************************

CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_CP042272_1 1.15|417848|35|NZ_CP042272|CRISPRCasFinder,CRT 417848-417882 35 NZ_CP010270 Paenibacillus polymyxa strain Sb3-1 plasmid pSb31l, complete sequence 84782-84816 0 1.0
NZ_CP042272_1 1.12|417645|35|NZ_CP042272|CRISPRCasFinder,CRT 417645-417679 35 NC_017543 Paenibacillus polymyxa M1 plasmid pPPM1a, complete sequence 364175-364209 2 0.943
NZ_CP042272_2 2.14|428023|36|NZ_CP042272|PILER-CR,CRISPRCasFinder,CRT 428023-428058 36 NC_014628 Paenibacillus polymyxa SC2 plasmid pSC2, complete sequence 222142-222177 2 0.944
NZ_CP042272_4 4.1|3468577|36|NZ_CP042272|CRISPRCasFinder 3468577-3468612 36 NZ_AP017933 Lactobacillus sakei strain LK-145 plasmid pLs145-b, complete sequence 945-980 7 0.806
NZ_CP042272_4 4.1|3468577|36|NZ_CP042272|CRISPRCasFinder 3468577-3468612 36 NZ_AP017939 Leuconostoc mesenteroides strain LK-151 plasmid pLm151-c, complete sequence 1951-1986 7 0.806
NZ_CP042272_1 1.31|417848|49|NZ_CP042272|PILER-CR 417848-417896 49 NZ_CP010270 Paenibacillus polymyxa strain Sb3-1 plasmid pSb31l, complete sequence 84768-84816 8 0.837
NZ_CP042272_1 1.28|417645|49|NZ_CP042272|PILER-CR 417645-417693 49 NC_017543 Paenibacillus polymyxa M1 plasmid pPPM1a, complete sequence 364161-364209 11 0.776

1. spacer 1.15|417848|35|NZ_CP042272|CRISPRCasFinder,CRT matches to NZ_CP010270 (Paenibacillus polymyxa strain Sb3-1 plasmid pSb31l, complete sequence) position: , mismatch: 0, identity: 1.0

tacgagactggtcatcaaaaaatatgacgattcga	CRISPR spacer
tacgagactggtcatcaaaaaatatgacgattcga	Protospacer
***********************************

2. spacer 1.12|417645|35|NZ_CP042272|CRISPRCasFinder,CRT matches to NC_017543 (Paenibacillus polymyxa M1 plasmid pPPM1a, complete sequence) position: , mismatch: 2, identity: 0.943

atctaaaacagcctggctaacatccttctgggata	CRISPR spacer
atctaaaacaggctggctaacatcctcctgggata	Protospacer
*********** **************.********

3. spacer 2.14|428023|36|NZ_CP042272|PILER-CR,CRISPRCasFinder,CRT matches to NC_014628 (Paenibacillus polymyxa SC2 plasmid pSC2, complete sequence) position: , mismatch: 2, identity: 0.944

atcaccccgagcatcgtcggctttgttccaaatagt	CRISPR spacer
ttcaccccgagcatcgtcggctttgttccaaatcgt	Protospacer
 ******************************** **

4. spacer 4.1|3468577|36|NZ_CP042272|CRISPRCasFinder matches to NZ_AP017933 (Lactobacillus sakei strain LK-145 plasmid pLs145-b, complete sequence) position: , mismatch: 7, identity: 0.806

gattggtgaaaaaggcggcgaagccacttccaaaaa	CRISPR spacer
aattggagaaaaaggcggcgaagccacttcagactc	Protospacer
.***** *********************** .*   

5. spacer 4.1|3468577|36|NZ_CP042272|CRISPRCasFinder matches to NZ_AP017939 (Leuconostoc mesenteroides strain LK-151 plasmid pLm151-c, complete sequence) position: , mismatch: 7, identity: 0.806

gattggtgaaaaaggcggcgaagccacttccaaaaa	CRISPR spacer
aattggagaaaaaggcggcgaagccacttcagactc	Protospacer
.***** *********************** .*   

6. spacer 1.31|417848|49|NZ_CP042272|PILER-CR matches to NZ_CP010270 (Paenibacillus polymyxa strain Sb3-1 plasmid pSb31l, complete sequence) position: , mismatch: 8, identity: 0.837

tacgagactggtcatcaaaaaatatgacgattcgagtcgcactctatat	CRISPR spacer
tacgagactggtcatcaaaaaatatgacgattcgagaagcaatgaagga	Protospacer
************************************  *** *  * . 

7. spacer 1.28|417645|49|NZ_CP042272|PILER-CR matches to NC_017543 (Paenibacillus polymyxa M1 plasmid pPPM1a, complete sequence) position: , mismatch: 11, identity: 0.776

atctaaaacagcctggctaacatccttctgggatagtcgcactctatgc	CRISPR spacer
atctaaaacaggctggctaacatcctcctgggataatgcccactgttgc	Protospacer
*********** **************.********.*  *  ..  ***

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 8542 : 29235 24 Bacteriophage(53.33%) plate,terminase,portal,holin,tail NA
DBSCAN-SWA_2 1077595 : 1086450 9 Bacillus_virus(28.57%) transposase NA
DBSCAN-SWA_3 1493649 : 1500862 9 Staphylococcus_phage(50.0%) NA NA
DBSCAN-SWA_4 4625166 : 4636711 10 Mollivirus(25.0%) NA NA
DBSCAN-SWA_5 4944188 : 4964530 22 Bacillus_phage(41.18%) plate,holin,tail,portal NA
DBSCAN-SWA_6 5386418 : 5445039 48 Brevibacillus_phage(30.0%) protease,transposase,coat NA
DBSCAN-SWA_7 5488079 : 5506831 22 Paenibacillus_phage(40.0%) integrase attL 5479248:5479262|attR 5504899:5504913
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Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
NZ_CP042272.1|WP_149032564.1|10353_10587_+|hypothetical-protein 10353_10587_+ 77 aa aa NA NA NA 8542-29235 yes