CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP042239	Sphingomonas sp. XS-10 chromosome, complete genome	1 crisprs	cas3,csa3,DEDDh,DinG	0	0	1	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP042239_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP042239_1

1475135-1475339

Orphan

Consensus_repeat	Method
CCGCTCCGAACGGCAAGACTCCGCCGCAACAGCCACCCATCGACACGGA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP042239_1

>merge|NZ_CP042239|1|1475135-1475339|CRISPRCasFinder
CTGCCCCGGCCGACAAGCCTTCGCCGCAGCAGCCGCCCGTCGACACGGATTTGGACATGCCTGCACGACCGGCACGGCCCGCTCCGAACGGCAAGACTCCGCCGCAACAGCCACCCATCGACACGGATTTGGACATGCCTGCACGACCGGCACGGTCCGCTCCGAACGGCAAGACTCCGCCGCAACAGCCACCCATCGACACGGA

>NZ_CP042239|1|1|1475135-1475339|CRISPRCasFinder
CTGCCCCGGCCGACAAGCCTTCGCCGCAGCAGCCGCCCGTCGACACGGA	TTTGGACATGCCTGCACGACCGGCACGGCCCGCTCCGAACGGCAAGACTCCGCCGCAACAGCCACCCATCGACACGGATTTGGACATGCCTGCACGACCGGCACGGT
CCGCTCCGAACGGCAAGACTCCGCCGCAACAGCCACCCATCGACACGGA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP042239.1\|WP_145846037.1\|1489613_1491767_+\|TonB-dependent-receptor-plug-domain-containing-protein	unknown	unknown	gnl\|CDD\|238657
NZ_CP042239.1\|WP_145846028.1\|1477287_1479246_+\|EAL-domain-containing-protein	unknown	unknown	gnl\|CDD\|227334
NZ_CP042239.1\|WP_145846041.1\|1494469_1494754_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP042239.1\|WP_145846017.1\|1467140_1468172_+\|flagellar-motor-switch-protein-FliG	unknown	unknown	gnl\|CDD\|235561
NZ_CP042239.1\|WP_145846034.1\|1488373_1488844_-\|DUF2846-domain-containing-protein	unknown	unknown	gnl\|CDD\|378537
NZ_CP042239.1\|WP_145846035.1\|1488845_1489451_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP042239.1\|WP_145846040.1\|1492855_1494364_-\|YifB-family-Mg-chelatase-like-AAA-ATPase	unknown	unknown	gnl\|CDD\|223679
NZ_CP042239.1\|WP_145846027.1\|1476464_1477121_+\|flagellar-hook-assembly-protein-FlgD	unknown	unknown	gnl\|CDD\|224756
NZ_CP042239.1\|WP_145846030.1\|1479727_1483882_+\|DNA-directed-RNA-polymerase-subunit-beta	unknown	unknown	gnl\|CDD\|234749
NZ_CP042239.1\|WP_145846018.1\|1468183_1468864_+\|flagellar-assembly-protein-FliH	unknown	unknown	gnl\|CDD\|235679
NZ_CP042239.1\|WP_145846012.1\|1463324_1463744_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP042239.1\|WP_145846038.1\|1491770_1492859_+\|PepSY-domain-containing-protein	unknown	unknown	gnl\|CDD\|377164
NZ_CP042239.1\|WP_145846022.1\|1470983_1472270_+\|sigma-54-dependent-Fis-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225114
NZ_CP042239.1\|WP_145846032.1\|1483983_1488261_+\|DNA-directed-RNA-polymerase-subunit-beta'	unknown	unknown	gnl\|CDD\|234794
NZ_CP042239.1\|WP_145846024.1\|1472286_1474368_+\|flagellar-biosynthesis-protein-FlhA	unknown	unknown	gnl\|CDD\|235672
NZ_CP042239.1\|WP_145846020.1\|1468988_1470611_+\|flagellar-M-ring-protein-FliF	unknown	unknown	gnl\|CDD\|235668
NZ_CP042239.1\|WP_145846021.1\|1470622_1470982_+\|flagellar-motor-switch-protein-FliN	unknown	unknown	gnl\|CDD\|236350
NZ_CP042239.1\|WP_145846010.1\|1463035_1463335_+\|flagellar-biosynthesis-protein-FlgJ	unknown	unknown	gnl\|CDD\|274188
NZ_CP042239.1\|WP_145846014.1\|1463952_1464369_-\|flagellar-biosynthesis-protein-FlgB	unknown	unknown	gnl\|CDD\|235667
NZ_CP042239.1\|WP_145846016.1\|1464373_1467037_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP042239.1\|WP_145846037.1\|1489613_1491767_+\|TonB-dependent-receptor-plug-domain-containing-protein	gnl\|CDD\|238657	cd01347, ligand_gated_channel, TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) anti-parallel beta-barrel. Ligands apparently bind to the large extracellular loops. The N-terminal 150-200 residues form a plug from the periplasmic end of barrel. Energy (proton-motive force) and TonB-dependent conformational alteration of channel (parts of plug, and loops 7 and 8) allow passage of ligand. FepA residues 12-18 form the TonB box, which mediates the interaction with the TonB-containing inner membrane complex. TonB preferentially interacts with ligand-bound receptors. Transport thru the channel may resemble passage thru an air lock. In this model, ligand binding leads to closure of the extracellular end of pore, then a TonB-mediated signal facillitates opening of the interior side of pore, deforming the N-terminal plug and allowing passage of the ligand to the periplasm. Such a mechanism would prevent the free diffusion of small molecules thru the pore.	5.91072e-53
NZ_CP042239.1\|WP_145846028.1\|1477287_1479246_+\|EAL-domain-containing-protein	gnl\|CDD\|227334	COG5001, COG5001, Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain [Signal transduction mechanisms].	9.06567e-168
NZ_CP042239.1\|WP_145846017.1\|1467140_1468172_+\|flagellar-motor-switch-protein-FliG	gnl\|CDD\|235561	PRK05686, fliG, flagellar motor switch protein G; Validated.	2.74396e-122
NZ_CP042239.1\|WP_145846034.1\|1488373_1488844_-\|DUF2846-domain-containing-protein	gnl\|CDD\|378537	pfam11008, DUF2846, Protein of unknown function (DUF2846). Some members in this family of proteins with unknown function are annotated as lipoproteins however this cannot be confirmed.	3.45355e-16
NZ_CP042239.1\|WP_145846040.1\|1492855_1494364_-\|YifB-family-Mg-chelatase-like-AAA-ATPase	gnl\|CDD\|223679	COG0606, COG0606, Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones].	0
NZ_CP042239.1\|WP_145846027.1\|1476464_1477121_+\|flagellar-hook-assembly-protein-FlgD	gnl\|CDD\|224756	COG1843, FlgD, Flagellar hook capping protein [Cell motility and secretion].	2.80459e-34
NZ_CP042239.1\|WP_145846030.1\|1479727_1483882_+\|DNA-directed-RNA-polymerase-subunit-beta	gnl\|CDD\|234749	PRK00405, rpoB, DNA-directed RNA polymerase subunit beta; Reviewed.	0
NZ_CP042239.1\|WP_145846018.1\|1468183_1468864_+\|flagellar-assembly-protein-FliH	gnl\|CDD\|235679	PRK06032, fliH, flagellar assembly protein H; Validated.	1.25894e-10
NZ_CP042239.1\|WP_145846038.1\|1491770_1492859_+\|PepSY-domain-containing-protein	gnl\|CDD\|377164	pfam03929, PepSY_TM, PepSY-associated TM region. The PepSY_TM family is so named because it is an alignment of up to five transmembranes helices found in bacterial species some of which carry a nested PepSY domain, pfam03413.	8.76351e-26
NZ_CP042239.1\|WP_145846022.1\|1470983_1472270_+\|sigma-54-dependent-Fis-family-transcriptional-regulator	gnl\|CDD\|225114	COG2204, AtoC, Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms].	1.79149e-98
NZ_CP042239.1\|WP_145846024.1\|1472286_1474368_+\|flagellar-biosynthesis-protein-FlhA	gnl\|CDD\|235672	PRK06012, flhA, flagellar type III secretion system protein FlhA.	0
NZ_CP042239.1\|WP_145846020.1\|1468988_1470611_+\|flagellar-M-ring-protein-FliF	gnl\|CDD\|235668	PRK06007, fliF, flagellar basal body M-ring protein FliF.	3.67079e-130
NZ_CP042239.1\|WP_145846021.1\|1470622_1470982_+\|flagellar-motor-switch-protein-FliN	gnl\|CDD\|236350	PRK08916, PRK08916, flagellar motor switch protein FliN.	4.89177e-32
NZ_CP042239.1\|WP_145846010.1\|1463035_1463335_+\|flagellar-biosynthesis-protein-FlgJ	gnl\|CDD\|274188	TIGR02541, Peptidoglycan_hydrolase_FlgJ, flagellar rod assembly protein/muramidase FlgJ. The N-terminal region of this protein acts directly in flagellar rod assembly. The C-terminal region is a flagellum-specific muramidase (peptidoglycan hydrolase) required for formation of the outer membrane L ring.	7.55263e-08
NZ_CP042239.1\|WP_145846014.1\|1463952_1464369_-\|flagellar-biosynthesis-protein-FlgB	gnl\|CDD\|235667	PRK06004, flgB, flagellar basal body rod protein FlgB; Reviewed.	1.36117e-28
NZ_CP042239.1\|WP_145846032.1\|1483983_1488261_+\|DNA-directed-RNA-polymerase-subunit-beta'	gnl\|CDD\|234794	PRK00566, PRK00566, DNA-directed RNA polymerase subunit beta'; Provisional.	0

>NZ_CP042239.1|WP_145846024.1|1472286_1474368_+|flagellar-biosynthesis-protein-FlhA
MDALNAFLTRIGASRDIALAVGVIAIIGMLILPMPGWLLDLGLALSITLSAMILMTALFIEKPLQLSAFPTILLIATMLRLGLNLASTRLILGHGHEGPDAAGGVIAAFGDFLIGGQMVIGLTIFAILVVINFVVITKGAGRIAEVAARFSLDAMPGKQMAIDADLSAGMISEEQARARRTEVEAESGFFGSMDGASKFVKGDAIAGLLITAINVVVGLIIGVAIYGVPFGTAFETYTLLTVGDGLVSQIPALIVSTAAGLLVSKGSQAGKTGEALGQQLGRYPQAFGMVAVLMGLLALMPGLPFIPFFAFAAGSGYAAWYLSKKAKETARIAARDAEVEEAHAAAVAEEPISRTLAIDAVRIEIGYGLLPIINDAAREPRLDDQVRALRRQMATEYGFVLPSVRIIDNMGLQANQYVIYIKETEAARGDIRLDRLLVINPGDGPAGIPGEPTREPVFNLPALWIDRELREEAGFRGLTVVDAGTIITTHLTELVKDNIADMLSYTEVQKLLNEVHTDSAKLVAEIIPARISISGVQRILQNLLGEGVSIRDIPTILEGIAEAAPITGNLTQITEHVRARLARQISAVQGRDGAIPIVTLSPHWDTAFAENILGQGEDRHLAMPPSMLQGFIAAVRETYDQLANNGEIPCLLTNPTIRPFVRSVIERVRPATVVLSQNEIHARSRVRALGTIG
>NZ_CP042239.1|WP_145846022.1|1470983_1472270_+|sigma-54-dependent-Fis-family-transcriptional-regulator
MQIRLMIVGSSGGAFGEAAQMARDLGAEVMLAHTPVAALEQLRETGAGLVMIDVESDVAAFMKDLQAERFAVPVLACGIDAPADRAVAAVRAGAKDYIPLPPDRDLIAAAIAQLAQIDTGSLIGDDPAFLRALDFARAMAPAHAPILITGERGSGKERVAHATHAASGRHGFITVECAGVAPNVLESELFGHEVGAFDGARATRRGAFVTARGGTLFLRDIDRLPAPLQLRVLEAMAEADAPNVIASTTRDLTLFVEAGAFRSDLLARFALATVALPPLRNRGGDIRLLAASFAIRFAAMQGQPSPLIDPAAERLLAHYDWPGNIAELQDAMHRAVLLAPDGYIGPEAIVLADGSRITATAPATGRPVIASLVGQTVEEVERALILETLERCQGNRTSASQILGISVRTMRNKLKAFVEAGIAVAPAA
>NZ_CP042239.1|WP_145846021.1|1470622_1470982_+|flagellar-motor-switch-protein-FliN
MSESPDPVPSQEVSAMVESDTSPAFEEFGLDAPSADPVRAAPLTAVNEVPVRVQAVLGRARVPVGELIRMKSGMVLELDRRVGEPVDVYVNNRLVARGEVMLVDHALGVTLTEIVRQDS
>NZ_CP042239.1|WP_145846020.1|1468988_1470611_+|flagellar-M-ring-protein-FliF
MEQVKGLIAQLGTKRLAIMGGVAALIMAALAMVALRGETSTMGFLYTDLDPAGAAAITEKLKAQNVPFELSADGTAVMAPVDKLAELRMAMAGEKLGGKIGYDVLDQEQPFGVSASRAKLNETRAIEGELVRSIQSLDSVSSARVHIVMPERAMFAAEARPATASITVKTKGRLPGETIQAIRYLVSSAVPELSPESVSIVDQSGALLARAGEQGAAGGGSIDERQTQIESKMREEIIALLEPIVGQGKVRAEVAAQIDRDATREESNVFDPDKQVIARQVTVESDDQSREESEDQAVTVGNQLPDAQEAPVGAAGGDTRQQSRKETSEDTTYANSSTRSIVSREPGKVTRLTVAVTVDGGAKGLAEARKQQLTRLVENAVGIDAERGDSVVVESMAFAAPADLADTQPAWWSIFTSDQVVGLLKLVLVAIVGLVVLRMLRTRANKEALAAPADTAPMLPTDRNAQMLAIAQQAADGDPEALAQLEAIQGTQPDVPLLDHEVTLNNVDGQVKASHLRKVGDLVASNAPEATAVIRQWMNA
>NZ_CP042239.1|WP_145846018.1|1468183_1468864_+|flagellar-assembly-protein-FliH
MDLSFSTRPFGFDRVFTAREAARTVEHDSLSQTIRIEALEDEIAHLRRTQNEELARARADGFQAGMDAARNDRETALLAALDALQAGVEGITEERAGFQADTAREAAELVMAVAEHLAGHPLLSSPAQAIDDAIGRALSQVARGTEMTVRVNPDMAAQIEERIAQRQANDRRRLNLHIAHDATLAPGDARIEWDEGGLTLDRAAREAAVLRELGNLFPAPQVAEAA
>NZ_CP042239.1|WP_145846017.1|1467140_1468172_+|flagellar-motor-switch-protein-FliG
MMMTPVVEPPEFKRLNQRQRAAALMLALGQEHGGPIWEQLSIDEVKELSASMAQLGRIPSNIVEHLLNQFQAEMSSMSSCHGSFETTERLLNGVLDADRVKEIMEDIRGPSGRTMWDKLSNVSEAVLAGYLRNEYPQTIAVILSKLKSDHAARVLGALPREIAVDVVQRMLRMETVQKEVLAQVEATLKTEFMANFARAQRRDPHEAMAEIFNAMDRATEENMLQALDARSPDAADRIRSLMFTFEDLGGLLPASIAVIVRQADKRQMALALKGANDEIKQLFFSTMTERSAKLLREDMASMGPVRARDCEEAQSALVRLAKNLADMGEIVLVDPKSDDTMII
>NZ_CP042239.1|WP_145846016.1|1464373_1467037_-|hypothetical-protein
MDIASGLAGLSLLGGDTSLFTASGGGLAIESRAVREAKAQFTLPETTPPWRQAAPTSSIYTQVTEIRRLSTLIDKPLTGPRALPTDVQTAFTTWKALDRLNLLAENAAKPGLTATERAQLATTFTKGLSDLQTFMGSAPSDKLDLSFGQPVRRAESVAVSPGTGSLAVSVTGNGVVAKRDEILSQLSGTERFRVTLERGSSVDTVVIDLGSLPEPPTLDSVANLINQAIADIPMRDLNGDVVYDSGGTAVPKWKVAFEPEKTVDGWAMGMTRQGLESVSIDQVDAPDALMVATGRTGLETPTAARVLRIDDPQAAMTNKTLATIEAKDRLATKAVATTTDAIVTDTDGFAYVVGTASGDLDELRVAGSQDLYLTKMDSLGNTVWQRSLGASDSASGAAITVADNGDIVVAGTVSGHFGGTDADADMLVARFANNGDEQFATRIRSAGEDRATSVTIADDGAILVGGRAALGGGDAFVARLSGTGSLQLRQRIDAGGDEGITAMAMTADGRLAAVTREGSSSRLRFLDPANPAVELGSVDLGTVDARAIAIGPDGSIAIGGTTLAALAGTQTNGIAGGRDGFVARMAADGSGLSVTYLGTAGNEQVDSLVFTNGKLYVGGRTSGDLGGTRSGPVDGFVARLDPASGAVEQVNQFGQPTLRTEPVRLAASSGGTSMVDALGFGRGTLTPDGSLKLTTATSLRAGDSFQMRVAGGVVRTVTIDKDETLTSLADKVRRISGSKALVTTPKSGEGAMLRIAPKASIDIEFIAGPAGRDALEKLGLPAARVSGMDAIDKDAPIVKPGGTYGLGLDLSLSIADTKSAKAALAKLKSALSISQTGYRSLYWDDTKLALVEGSKKGGSTAREQAQLANYQAALDRLAGGIPTSMGF
>NZ_CP042239.1|WP_145846014.1|1463952_1464369_-|flagellar-biosynthesis-protein-FlgB
MTDLIGGITRNMKHLSERQRVVAENIANSETPGFKAREVRAPSFADLLQTGSGGGQVARPQVKLTGGMAALGARAPISAGSVMLDANTTETKPDGNNVTLEEQLLKMGQIQADFAAMTNLYRKSQGLIQSALGRKGGG
>NZ_CP042239.1|WP_145846012.1|1463324_1463744_+|hypothetical-protein
METELTDLFRSLASICEEETALLQQGRRGEVAGLVQAKTRLVGAVDAEVARLDRVSPDWRDALNGETRAELGDLALRLRDAARDNAATLRRQIDLSDDLMAEISADARRRRGGRSEAYGASGAMTANNLAVPISVNTSF
>NZ_CP042239.1|WP_145846010.1|1463035_1463335_+|flagellar-biosynthesis-protein-FlgJ
MNPLSAPTAATTGATPTVPSPKNAETARAFEAVFIGQMTQLMLESVESGEFSGGHGEQMFRGVLSEHLGTAIAAKGGLGLAPHVLDQIIKLQEGASNGN
>NZ_CP042239.1|WP_145846027.1|1476464_1477121_+|flagellar-hook-assembly-protein-FlgD
MAVDTVTGTNNAPTTQSNALSKLATDSTMFLKLLTTQMQNQDPLDPMDTSEYTAQLVQFSQVEQSIQQNTTLKSILSALSSDGLLSAAPSVGKVATFASADAGLTADSPAQWSYVAERSTGKVTATILDSSGKAVHTIDRTDATGDISWDGKVADGSTAPPGIYKLSITATDAAGGGVPVGIFARGMVREVTQDASGMAFMVNGVTYGSNMLVGLATE
>NZ_CP042239.1|WP_145846028.1|1477287_1479246_+|EAL-domain-containing-protein
MSNSLLSLFDTDARPLPLAQYEQLRRQIPWLYGLLIANGISLAITHHHSTSILLTRWLPGVLIAAAFLRLVMWLRAPRAATLSERQAERRIAQTQILAFLMASAFIGWTIALDWSSNGIGRDHVAVAVAATMLSCLLCLMHVPKVAGMVAVSVVVPFFIYCLTLGSLSAIVVAANIALVAGVIVRVLGGSHRMFVDLIQSQQALSEERRQASRLSDENQLLAHTDSLTGLPNRRHFFARLDACLKRREANGQAPFCVGVLDLDRFKPVNDTFGHAMGDRLLGEIGRRLSVHAADDLLIARLGGDEFGVLIDGDGAIARRRVQALYDAVCAPMTIQDAVLRVGCSVGLASYPDAGRTAHALFDRSDYALYHAKSHERGHCVIFSREHEALIRDEHQLEAALRHADLDAELSLVFQPIYEARGIVLTGVEALARWQSPILGQVTPDRLVAMAERLGMINQVTLILFAKALTEMARLPREIGMNFNLSVHDIASPETVQELIRMIAASRIAPQRLTFEITETAVISDCAAARAVLGRLRYLGARIAMDDFGTGYSSLGMLHQIPLDLIKVDRSFAAGMTTPSGRAMIAAIRSLAQSLSLDCVIEGIENEAQLMEVSLLGCRYAQGYLLGRPVPMETLLRTIREDRKNGQTALAAA
>NZ_CP042239.1|WP_145846030.1|1479727_1483882_+|DNA-directed-RNA-polymerase-subunit-beta
MATKAIESGTAKRRIRKVFGDIHEVVQMPNLIEVQRESYEQFLRSDPSIGYVSGLEKTLRSVFPIRDFAGTAELDFVTYELEPPKFDVEECRQRGITYAAPMRVTLRLIVFEVDPDTDARSVLDIKEQDVYMGDMPLMTGNGTFFINGTERVIVSQMHRSPGVLFDHDRGKTHASGKYLFAARVIPYRGSWLDFEFDAKDIVNVRIDRKRKLPVTTLLYALGLNSEDILNHFYNTVTYVRGPGGWQIPFAPENWRGAKPMFDIVDAKSGEVIFPAGQKISPRAANKAGKDGLETLLIPTEEIFGRYSAFDLINESTGEIYIEAGDEVSAENLELLDKAGIERIELLDIDHISTGPWIRNTLKADKAEEREQALSDIYRVMRPGEPPTLETAESLFGGLFFDPERYDLSAVGRVKLNMRLDLDAEDTVTTLRTEDILAVVKTLVDLKDGKGEVDDIDNLGNRRVRSVGELLENQYRVGLLRMERAVKERMSSVDVSTVMPNDLINAKPAVAAVREFFGSSQLSQFMDQTNPLSEVTHKRRVSALGPGGLTRERAGFEVRDVHPTHYGRICPIETPEGPNIGLINSLATFSRVNKYGFIETPYRKVVDGKVTKDVVYLSAMEEAKHTIAQASAEVDGEGRFTEDLISARQAGEFLMALPETVTLMDVSPKQLVSVAASLIPFLENDDANRALMGSNMQRQAVPLVKAEAPFVGTGMEETVARDSGAAIAAKRAGIVDQVDASRIVIRATGEVSAEESGVDIYTLMKFERSNQSTCINQRPLVKVGEMVSAGDIIADGPSTEFGELALGRNVLVAFMPWNGYNYEDSILISERIVKDDVFTSIHIDEFEVMARDTKLGPEDITRDIPNVGEEALRNLDEAGIVYIGAEVEPGDILVGKITPKGESPMTPEEKLLRAIFGEKASDVRDTSLRLPPGVTGTVVDVRVFNRHGIDKDERAMAIEREEIERLKKDSDDERNILNRATWSRLKEMLLGQTATGVPKGLKKGSVIDEDLLDSVDRHEWWKFAVADDKVQGDLETVKGQYDEAVKRIKDKFEDRREKLERGDELPPGVLKMVKVFVAVKRKLQPGDKMAGRHGNKGIISRILPQEDMPFLEDGTPVDFVLNPLGVPSRMNVGQIFETHLGWAARGLGAKIGDALDAWREANPNPEAGQPPEAVKDLLKTVYGDNYSDDIERRDTASIVELAQNVRAGVPMGTPVFDGAVEADVTAMLRLAGLDESGQVDLFDGRTGDMFDRKVTVGYKYVLKLHHLVDDKIHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALQAYGAAYTLQEMLTVKSDDVVGRTKVYEAIVKGDDTFEAGIPESFNVLVKEMRSLGLNVELKSHELDSDGEPIVEPAE
>NZ_CP042239.1|WP_145846032.1|1483983_1488261_+|DNA-directed-RNA-polymerase-subunit-beta'
MNELTNFANPVAKPETFDQIQIGIASPDRIRSWSFGEIKKPETINYRTFKPERDGLFCARIFGPIKDYECLCGKYKRMKYKGIVCEKCGVEVTVSKVRRERMGHIELAAPVAHIWFLKSLPSRIGLLLDMQLKQLERVLYFESYIVTEPGLTPLEKFQLLTEDELLDAQDEYGEDAFSAGIGAEAVKIMLMDLDLEGERKELLEELATTKSELKPKKIIKRLKVVESFIDSGNRPEWMILDVVPVIPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLMELRAPDIIVRNEKRMLQEAVDALFDNGRRGRTITGANKRPLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVTGPELKLHQCGLPKKMALELFKPFIYARLDAKGLSMTLKQAKKWVEKERKEVWDILDEVIREHPVLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCSAFNADFDGDQMAVHVPLSLEAQLEARVLMMSTNNILSPANGKPIIVPSQDMVLGLYYLSMEKEGEPGQGMVLGDMAEVHQALFAGAVTLHTKITSRVPQTDEDGNTYMKRFETTPGRMLLGECLPKSHKVPFDVVNRLLTKKDVGDVIDEVYRHTGQKETVLFADAIMALGFRHAFKAGISFGKDDMIIPASKEATVDETRTLVKDFEQQYQDGLITQQEKYNKVIDAWSRCGDVVAAAMMDEIKSVKTDEATGREKPANAIYMMAHSGARGSAAQIKQLAGMRGLMAKPSGEIIETPIISNFKEGLTVLEYFNSTHGARKGLADTALKTANSGYLTRRLVDVSQDCVVMEQDCGTERALEMKAIVQGGSVIASLGERILGRTTAEDVVDPKSGDVAIPTGTLLDEPMIAQIEALGIQGMKIRSPLVCEAKIGVCAKCYGRDLARGTPVNIGEAVGVIAAQSIGEPGTQLTMRTFHIGGAAQLNEQSNLEAPVDGTVEFRDLRLITDQRGRRVVLARSGEIAILDDDGRELAVHRIPYGAYVMFDDGHIVSKGDRMAEWDPFTMPVITETGGVVKYQDLIDGKTLTEQVDEATGIAQRVVIENRGSAAKKEDLRPRLTLTGEGEGEAARYMLAAGAVISVEDGATVQGGDVLARVSRESAKTRDITGGLPRVAELFEARKPKENAIIAKVSGRVVFGKDYKAKRKIGIQPEDGGEVVEYLVPKSKVIDVQEGDYVKRGDNLIGGSPDPHDILEVLGIEPLAEYLVAEIQEVYRLQGVKINDKHIEVIVRQMLQKVEITDGGDTTLLAGEQVDRDEMDEHNAKLEKNQSPAVGKPILLGITKASLQTRSFISAASFQETTRVLTEAAVQGKQDTLIGLKENVIVGRLIPAGTGAGMNRMRIAATSRDAALRVQQRKLQEALIAPNSAAEERAAELAQNPIDAMVTSDALEKVETSGDGSDEAAGDYLNKD
>NZ_CP042239.1|WP_145846034.1|1488373_1488844_-|DUF2846-domain-containing-protein
MKLKHIALGLALGLSAPVVAWAGQGEEAPLVTKSGTIGAPASGKGQVVFFRPGSIMGAALGCTVHEGDKQVARLGSGKYYVVEAEPGVHLYNTRGEAKDEITLEVEEGETYFVRCNIGMGVMSGRANLSPSDRATFAQRGKKLKMWEPKNETAEAK
>NZ_CP042239.1|WP_145846035.1|1488845_1489451_-|hypothetical-protein
MGVSLAVGLMVLGQAEMPTIPDDSSSIASQQDVNIAAGTSVEVELAEPLSSKTARQGQRFSIRLAAPLLDTNGRVIIPPGASGEGEVIHARKAGFAGKAGEMIVAARFIRCGPIEVPLGRFKFGGAGESRSGSAGAVNSVAAGASVVAPVAAVGSVIAFMIKGGQIEIGSGVRGVAKLKEDLNTTDEAVAACGAAVGSVGE
>NZ_CP042239.1|WP_145846037.1|1489613_1491767_+|TonB-dependent-receptor-plug-domain-containing-protein
MSVRSEFALPLIALALMAPTAALADSVPAVPAEADETEQVVITAARTELPASALPLTVDVIEKEELDQQVSIAGSVVDAVANLSPSFSPTRQKLSGAGETLRGRSPLYAINGIPQSTPVRDGSRDGYTIDPFFLDRVELIYGSNALQGIGATGGVVNQLVAKAPATDGFSGRALLQGSAGSGLDDNGLGGKAAALVAWRGGAFDVTVGGAYEKRGVFYDGAGRIIGVDGAQGDTMASKSWSAFARLGWQLNDTARLELFANRFELKGDHDYVQVAGSRATNTPSTSVRGSPDGEPVSNRVETVNLTLTDSDLAGGKLVLQAFFNRTRDIFGGSTASTFQDVSIAPIGTLFDQSANKSRKLGARFSYEREVADLLTATVGFDSLWDRTAQSLLWTGRDWVPPTTFRSLAPFAQLNLGLFDDRLRLAGGVRYEDVKLKVDDFTTLASYGSRAVGGGNPSFRDALLNGGVILEPVKGIRAYASYAEGYTIADVGRILRAINQPDVDIDTFLDISPVVSNNREIGVEVKRGPLDASATYFWSSSKLGGLLVLNPAGVYDVQRQRIEIEGLEVNLGVRLPVNGLRASIGYAHLAGRTDSDQDGVVDVDLDGANISPDRLNLALDYTRGPLSARVQTGFYLARTFMLSTNPTAYDPATAFEGYNLTDAVVRYETGFGGVTLAVSNLFDADYITYNSDTISVTNDLRFFSGRGRVFTLGWDFKF
>NZ_CP042239.1|WP_145846038.1|1491770_1492859_+|PepSY-domain-containing-protein
MRWIDLLHRWAGGVVGLVLATLGLSGAILVFKHQWLGWLPGAGDAQRQDVAALAAQMDAALTASGAAPRSVLFPYADFGLARRSYAEGAGAYADQSGQVVAQWTSKWDRVELWLFDLHHHLFLDDLGATAAGIAGLIGLIFVITGVILWWRLRKTFKFRLLPKRMSRPAIVTHHRDIGVVFAPLLFLSMATGMLMVLKPVSTAVFAPGQNVGALQAPFAPPDVEGGALAVDLDWTAMFTAARTRYPGAEIRIVALPRKPGDLIQMRLRQPAEWLPNGRTLVWFRPENGAMIDTRDAQAMPTGIRAYNAVYPLHAAKVGGWLWKLAVASTGLVLAMLGSLAVWTFWFKRPRPRTRPARPLAIT
>NZ_CP042239.1|WP_145846040.1|1492855_1494364_-|YifB-family-Mg-chelatase-like-AAA-ATPase
MVASVSTVAYLGLEARAVEVQCNLVPGLPKFLIVGLPDKAVAESRERVRAAMAAIGLAMPPKHIVLNLSPADLPKEGSHFDLPIALALLAAMGVVDAEALADYVVVGELALDGRIAPSPGVLLAALHAAGEGKALICPAAQGAEAAWGGTGAVLAAPDLIALLNHLKGQQLLGAPEPGEADPPGFGPDLKQVKGQETAKRALEIAAAGGHNMLMVGPPGAGKSLMASCLPGILPPLDAAEALEVSMVASVAGTLEGGRLTRTRPFRSPHHSASMAALTGGGLKVKPGEVSMAHLGVLFLDELPEFQRAVLDSLRQPLEAGVVSVARANAHVTFPARVQLVAAMNPCRCGHLGDPALACARAPRCAADYQAKVSGPLLDRIDLHVEVQPVTAADLVLPPPAEGSAEVAARVAAARSVQRTRYGADGPRTNAEADGPALDAAATPDDPGRKLLAQAAEAMRMSARGYTRVLRVARTIADLAGADGVGRIHIAEALSYRRQAPRS
>NZ_CP042239.1|WP_145846041.1|1494469_1494754_+|hypothetical-protein
MRPKRHPIVRITLLVTGILLFLVVAPLASPLPGPGGTVIAALGIVLILRNSRWARHRFVRLKARWPRVGAFIDRILVRGSPKRRRERAKQVAAN

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

2292045 : 2343706

Tupanvirus(16.67%)

protease,integrase,tRNA,tail

attL 2297003:2297024|attR 2310617:2310638

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_145847141.1\|2292045_2292936_-\|protease	zinc metalloprotease	A0A1I9SA48	Rhodococcus_phage	2.4e-35	37.4
WP_145847142.1\|2293042_2294206_+	patatin-like phospholipase family protein	NA	NA	NA	NA
WP_145847144.1\|2294222_2295008_+	3-hydroxybutyrate dehydrogenase	Q06VL0	Trichoplusia_ni_ascovirus	2.2e-16	30.2
WP_145847145.1\|2295004_2295625_+	DUF4893 domain-containing protein	NA	NA	NA	NA
WP_145847148.1\|2295676_2296993_+	amidohydrolase	NA	NA	NA	NA
2297003:2297024	attL	NA	NA	NA	NA
WP_145847150.1\|2297095_2297338_-	hypothetical protein	NA	NA	NA	NA
WP_145847152.1\|2297465_2298215_-	Bax inhibitor-1/YccA family protein	NA	NA	NA	NA
WP_145847154.1\|2298345_2298885_+	RNA 2',3'-cyclic phosphodiesterase	NA	NA	NA	NA
WP_145849734.1\|2298928_2299423_-	superoxide dismutase family protein	A0A2K9V7M6	Bandra_megavirus	2.7e-09	32.1
WP_145847156.1\|2299579_2300473_-\|integrase	tyrosine-type recombinase/integrase	A0A2P1CCU8	Gordonia_phage	2.2e-09	33.7
WP_145847158.1\|2300666_2301404_+	alpha/beta fold hydrolase	NA	NA	NA	NA
WP_145849736.1\|2301412_2302153_+	hypothetical protein	NA	NA	NA	NA
WP_145847160.1\|2302204_2302657_+	lactoylglutathione lyase	NA	NA	NA	NA
WP_145847162.1\|2302659_2303748_+	nitronate monooxygenase	NA	NA	NA	NA
WP_145847164.1\|2303744_2304473_+	hydroxyacylglutathione hydrolase	NA	NA	NA	NA
WP_145847166.1\|2304469_2305072_-	DedA family protein	NA	NA	NA	NA
WP_145847168.1\|2305105_2306062_-	glutathione synthase	NA	NA	NA	NA
WP_145847170.1\|2306189_2306546_-	YraN family protein	NA	NA	NA	NA
WP_145847171.1\|2306658_2307495_-	16S rRNA (cytidine(1402)-2'-O)-methyltransferase	NA	NA	NA	NA
WP_145847173.1\|2307507_2308707_+	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_145847175.1\|2308835_2309975_-	coproporphyrinogen III oxidase	NA	NA	NA	NA
WP_145849738.1\|2309987_2310569_+\|protease	serine protease	A0A2K9L334	Tupanvirus	8.8e-07	27.3
WP_145847177.1\|2310706_2311378_-	hypothetical protein	NA	NA	NA	NA
2310617:2310638	attR	NA	NA	NA	NA
WP_145847179.1\|2311429_2312011_-	DUF1989 domain-containing protein	NA	NA	NA	NA
WP_145847181.1\|2312000_2312696_-	YqcI/YcgG family protein	NA	NA	NA	NA
WP_145847183.1\|2312736_2313405_-	RdgB/HAM1 family non-canonical purine NTP pyrophosphatase	C6K8R2	Cassava_brown_streak_virus	3.8e-14	31.3
WP_145847185.1\|2313401_2313818_-	hypothetical protein	NA	NA	NA	NA
WP_145847187.1\|2313841_2314252_-	hypothetical protein	NA	NA	NA	NA
WP_145847189.1\|2314283_2315000_-	ribonuclease PH	NA	NA	NA	NA
WP_145847191.1\|2315187_2315694_+	hypothetical protein	NA	NA	NA	NA
WP_145847193.1\|2315747_2316419_+	hypothetical protein	NA	NA	NA	NA
WP_145847195.1\|2316449_2317493_+	heat-inducible transcriptional repressor HrcA	NA	NA	NA	NA
WP_145847196.1\|2317517_2318075_+	nucleotide exchange factor GrpE	NA	NA	NA	NA
WP_145847198.1\|2318238_2320980_+	[protein-PII] uridylyltransferase	NA	NA	NA	NA
WP_145847200.1\|2321047_2321422_+	hypothetical protein	NA	NA	NA	NA
WP_145847202.1\|2321452_2321803_-	DUF861 domain-containing protein	NA	NA	NA	NA
WP_145849740.1\|2321933_2322317_+	VOC family protein	NA	NA	NA	NA
WP_145847204.1\|2322313_2322517_+	hypothetical protein	NA	NA	NA	NA
WP_145847206.1\|2322938_2323805_-	family 16 glycosylhydrolase	M1I0P8	Acanthocystis_turfacea_Chlorella_virus	1.8e-24	28.7
WP_145847208.1\|2323801_2324335_-	translation initiation factor IF-3	A0A2L0UZ54	Agrobacterium_phage	3.7e-12	36.3
WP_145847209.1\|2324579_2326613_-\|tRNA	threonine--tRNA ligase	A0A2K9L297	Tupanvirus	4.5e-114	36.7
WP_145847211.1\|2326698_2327184_-	3'-5' exoribonuclease	K4JMX3	Caulobacter_virus	3.2e-18	35.7
WP_145847213.1\|2327397_2327757_+	glyoxalase	NA	NA	NA	NA
WP_145847215.1\|2327907_2329935_+\|tail	phage tail sheath family protein	A0A1J0GW47	Streptomyces_phage	3.3e-24	30.7
WP_145847217.1\|2330196_2331012_-	LD-carboxypeptidase	NA	NA	NA	NA
WP_145849742.1\|2331167_2332580_+	UDP-N-acetylmuramate--alanine ligase	NA	NA	NA	NA
WP_145849744.1\|2332565_2333792_-	mechanosensitive ion channel	NA	NA	NA	NA
WP_145847219.1\|2333980_2334391_+	hypothetical protein	NA	NA	NA	NA
WP_145847221.1\|2334387_2334591_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_145847223.1\|2334595_2335513_+	alpha/beta fold hydrolase	NA	NA	NA	NA
WP_145847225.1\|2335574_2336228_-	fructose-6-phosphate aldolase	I3ULK3	Synechococcus_phage	4.7e-49	50.5
WP_145847239.1\|2336317_2336986_+	DUF2490 domain-containing protein	NA	NA	NA	NA
WP_145847241.1\|2337223_2337913_+\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA
WP_145847243.1\|2338179_2340345_+	primosomal protein N'	NA	NA	NA	NA
WP_145847244.1\|2340552_2342178_+	hypothetical protein	NA	NA	NA	NA
WP_145849746.1\|2342194_2343706_+\|protease	trypsin-like serine protease	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage