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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP036433 Planctomycetes bacterium Pla85_3_4 chromosome, complete genome 8 crisprs csa3,PrimPol,cas3,Cas9_archaeal,DEDDh,RT,cas4,WYL,DinG,cas3HD 3 3 14 1

Results visualization

1. NZ_CP036433
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP036433_1 2728527-2728657 Orphan NA
2 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP036433_2 2882172-2882344 Orphan NA
2 spacers
csa3

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP036433_3 2903474-2903575 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP036433_4 3338767-3339050 Orphan NA
6 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP036433_5 3351157-3351237 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP036433_6 3356621-3356710 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP036433_7 4973799-4973882 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP036433_8 8760892-8761055 Orphan NA
3 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
NZ_CP036433_1 1.2|2728604|31|NZ_CP036433|CRISPRCasFinder 2728604-2728634 31 NZ_CP036433.1 2728640-2728670 0 1.0
NZ_CP036433_4 4.3|3338892|16|NZ_CP036433|CRISPRCasFinder 3338892-3338907 16 NZ_CP036433.1 8016336-8016351 0 1.0
NZ_CP036433_4 4.6|3339009|19|NZ_CP036433|CRISPRCasFinder 3339009-3339027 19 NZ_CP036433.1 1732900-1732918 2 0.895
NZ_CP036433_4 4.6|3339009|19|NZ_CP036433|CRISPRCasFinder 3339009-3339027 19 NZ_CP036433.1 4299178-4299196 2 0.895
NZ_CP036433_4 4.6|3339009|19|NZ_CP036433|CRISPRCasFinder 3339009-3339027 19 NZ_CP036433.1 4773603-4773621 2 0.895
NZ_CP036433_4 4.6|3339009|19|NZ_CP036433|CRISPRCasFinder 3339009-3339027 19 NZ_CP036433.1 7693119-7693137 2 0.895

1. spacer 1.2|2728604|31|NZ_CP036433|CRISPRCasFinder matches to position: 2728640-2728670, mismatch: 0, identity: 1.0

ggacaaatgtgcttgcggggacaaatgtgct	CRISPR spacer
ggacaaatgtgcttgcggggacaaatgtgct	Protospacer
*******************************

2. spacer 4.3|3338892|16|NZ_CP036433|CRISPRCasFinder matches to position: 8016336-8016351, mismatch: 0, identity: 1.0

cgaagaagacgacgaa	CRISPR spacer
cgaagaagacgacgaa	Protospacer
****************

3. spacer 4.6|3339009|19|NZ_CP036433|CRISPRCasFinder matches to position: 1732900-1732918, mismatch: 2, identity: 0.895

agacgatttcgacgacttc	CRISPR spacer
agacgaagtcgacgacttc	Protospacer
******  ***********

4. spacer 4.6|3339009|19|NZ_CP036433|CRISPRCasFinder matches to position: 4299178-4299196, mismatch: 2, identity: 0.895

agacgatttcgacgacttc	CRISPR spacer
agacgatatcggcgacttc	Protospacer
******* ***.*******

5. spacer 4.6|3339009|19|NZ_CP036433|CRISPRCasFinder matches to position: 4773603-4773621, mismatch: 2, identity: 0.895

agacgatttcgacgacttc	CRISPR spacer
agtcgacttcgacgacttc	Protospacer
** ***.************

6. spacer 4.6|3339009|19|NZ_CP036433|CRISPRCasFinder matches to position: 7693119-7693137, mismatch: 2, identity: 0.895

agacgatttcgacgacttc	CRISPR spacer
agacgatatcgaccacttc	Protospacer
******* ***** *****

CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_CP036433_5 5.1|3351184|27|NZ_CP036433|CRISPRCasFinder 3351184-3351210 27 MH576962 Streptomyces phage Satis, complete genome 69029-69055 4 0.852
NZ_CP036433_5 5.1|3351184|27|NZ_CP036433|CRISPRCasFinder 3351184-3351210 27 MK620894 Streptomyces phage Kradal, complete genome 69033-69059 4 0.852
NZ_CP036433_5 5.1|3351184|27|NZ_CP036433|CRISPRCasFinder 3351184-3351210 27 NZ_CP045303 Azotobacter salinestris strain KACC 13899 plasmid unnamed1, complete sequence 66677-66703 5 0.815
NZ_CP036433_5 5.1|3351184|27|NZ_CP036433|CRISPRCasFinder 3351184-3351210 27 NZ_CP010421 Azotobacter chroococcum NCIMB 8003 plasmid pAcX50f, complete sequence 194854-194880 5 0.815
NZ_CP036433_8 8.1|8760915|28|NZ_CP036433|CRISPRCasFinder 8760915-8760942 28 NZ_AP022593 Mycolicibacterium arabiense strain JCM 18538 plasmid pJCM18538, complete sequence 4465287-4465314 5 0.821
NZ_CP036433_1 1.1|2728550|31|NZ_CP036433|CRISPRCasFinder 2728550-2728580 31 NC_007974 Cupriavidus metallidurans CH34 megaplasmid, complete sequence 309636-309666 7 0.774
NZ_CP036433_1 1.1|2728550|31|NZ_CP036433|CRISPRCasFinder 2728550-2728580 31 NZ_CP046333 Cupriavidus metallidurans strain FDAARGOS_675 plasmid unnamed3 737585-737615 7 0.774

1. spacer 5.1|3351184|27|NZ_CP036433|CRISPRCasFinder matches to MH576962 (Streptomyces phage Satis, complete genome) position: , mismatch: 4, identity: 0.852

ccggctgcctggggaggtccggcaaga	CRISPR spacer
ccggccgccgggggaggtccggccgga	Protospacer
*****.*** ************* .**

2. spacer 5.1|3351184|27|NZ_CP036433|CRISPRCasFinder matches to MK620894 (Streptomyces phage Kradal, complete genome) position: , mismatch: 4, identity: 0.852

ccggctgcctggggaggtccggcaaga	CRISPR spacer
ccggccgccgggggaggtccggccgga	Protospacer
*****.*** ************* .**

3. spacer 5.1|3351184|27|NZ_CP036433|CRISPRCasFinder matches to NZ_CP045303 (Azotobacter salinestris strain KACC 13899 plasmid unnamed1, complete sequence) position: , mismatch: 5, identity: 0.815

ccggctgcctggggaggtccggcaaga	CRISPR spacer
ccgtctgcccggggaggtccggcacct	Protospacer
*** *****.**************   

4. spacer 5.1|3351184|27|NZ_CP036433|CRISPRCasFinder matches to NZ_CP010421 (Azotobacter chroococcum NCIMB 8003 plasmid pAcX50f, complete sequence) position: , mismatch: 5, identity: 0.815

ccggctgcctggggaggtccggcaaga	CRISPR spacer
ccgtctgcccggggaggtccggcacct	Protospacer
*** *****.**************   

5. spacer 8.1|8760915|28|NZ_CP036433|CRISPRCasFinder matches to NZ_AP022593 (Mycolicibacterium arabiense strain JCM 18538 plasmid pJCM18538, complete sequence) position: , mismatch: 5, identity: 0.821

--agcccacccggccagctaccagaccgct	CRISPR spacer
caagac--cccggccggctaccagaccgcg	Protospacer
  ** *  *******.************* 

6. spacer 1.1|2728550|31|NZ_CP036433|CRISPRCasFinder matches to NC_007974 (Cupriavidus metallidurans CH34 megaplasmid, complete sequence) position: , mismatch: 7, identity: 0.774

cgagagtt-----gcaaatgcggcgacagttgcaaa	CRISPR spacer
-----gttcctcggcaaatgcggcgacagatgcaac	Protospacer
     ***     **************** ***** 

7. spacer 1.1|2728550|31|NZ_CP036433|CRISPRCasFinder matches to NZ_CP046333 (Cupriavidus metallidurans strain FDAARGOS_675 plasmid unnamed3) position: , mismatch: 7, identity: 0.774

cgagagtt-----gcaaatgcggcgacagttgcaaa	CRISPR spacer
-----gttcctcggcaaatgcggcgacagatgcaac	Protospacer
     ***     **************** ***** 

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 8108 : 40625 23 Enterobacteria_phage(100.0%) transposase,integrase attL 18459:18476|attR 53257:53274
DBSCAN-SWA_2 115384 : 173012 43 Tetraselmis_virus(50.0%) transposase,integrase attL 111889:111905|attR 149693:149709
DBSCAN-SWA_3 797591 : 878331 57 Beihai_Nido-like_virus(16.67%) transposase,protease NA
DBSCAN-SWA_4 2388418 : 2468245 54 uncultured_Mediterranean_phage(20.0%) transposase,integrase,protease attL 2421898:2421912|attR 2473683:2473697
DBSCAN-SWA_5 2823778 : 2898420 66 Leptospira_phage(42.86%) tRNA,transposase,protease,integrase attL 2812996:2813011|attR 2875246:2875260
DBSCAN-SWA_6 2968727 : 3078808 81 Acidithiobacillus_phage(50.0%) transposase,integrase,protease attL 2961968:2961982|attR 3094435:3094451
DBSCAN-SWA_7 3412394 : 3451424 29 Bacillus_phage(28.57%) transposase,protease,integrase,tRNA attL 3446382:3446428|attR 3452454:3452500
DBSCAN-SWA_8 4639911 : 4686419 32 Yellowstone_lake_phycodnavirus(50.0%) transposase NA
DBSCAN-SWA_9 4760214 : 4909444 101 Synechococcus_phage(15.38%) transposase,integrase,tRNA attL 4826187:4826208|attR 4883114:4883135
DBSCAN-SWA_10 5345542 : 5353118 8 Paramecium_bursaria_Chlorella_virus(14.29%) NA NA
DBSCAN-SWA_11 7026404 : 7037737 9 Leptospira_phage(100.0%) transposase,integrase attL 7035628:7035687|attR 7046599:7046702
DBSCAN-SWA_12 7303235 : 7350643 36 Planktothrix_phage(50.0%) transposase,tRNA NA
DBSCAN-SWA_13 8792585 : 8862438 48 Synechococcus_phage(14.29%) transposase,protease,integrase attL 8810828:8810845|attR 8868689:8868706
DBSCAN-SWA_14 9374961 : 9396344 17 Bacillus_thuringiensis_phage(33.33%) transposase NA
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Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
NZ_CP036433.1|WP_145054488.1|4804967_4805258_+|tetratricopeptide-repeat-protein 4804967_4805258_+ 96 aa aa NA NA NA 4760214-4909444 yes